Query 022209
Match_columns 301
No_of_seqs 182 out of 480
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxi_A RNA-binding protein 10; 99.8 2.1E-19 7.1E-24 139.5 6.2 79 2-83 1-83 (91)
2 4f25_A Polyadenylate-binding p 99.8 9.2E-19 3.1E-23 140.8 9.3 78 3-84 6-84 (115)
3 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-18 4E-23 137.5 9.2 77 2-82 19-98 (99)
4 3p5t_L Cleavage and polyadenyl 99.7 1.7E-18 5.7E-23 133.0 5.0 79 3-85 2-85 (90)
5 2dgx_A KIAA0430 protein; RRM d 99.7 1.8E-17 6.3E-22 128.8 10.4 80 2-85 9-92 (96)
6 2lkz_A RNA-binding protein 5; 99.7 5.3E-18 1.8E-22 133.9 6.9 78 2-82 9-94 (95)
7 1whw_A Hypothetical protein ri 99.7 4.2E-17 1.4E-21 126.3 11.7 80 2-85 8-90 (99)
8 3s8s_A Histone-lysine N-methyl 99.7 2E-17 6.8E-22 133.2 9.6 78 2-83 6-86 (110)
9 1s79_A Lupus LA protein; RRM, 99.7 1.3E-17 4.5E-22 132.9 8.1 76 2-82 11-88 (103)
10 1sjq_A Polypyrimidine tract-bi 99.7 2E-17 6.9E-22 134.0 9.1 78 2-85 16-94 (105)
11 3md1_A Nuclear and cytoplasmic 99.7 3.1E-17 1E-21 122.8 9.3 78 2-83 1-81 (83)
12 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.2E-17 2.1E-21 126.4 11.4 80 2-85 15-95 (103)
13 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.3E-17 7.8E-22 124.5 8.6 78 2-83 6-86 (87)
14 2dnz_A Probable RNA-binding pr 99.7 8.1E-17 2.8E-21 123.6 11.7 80 2-85 5-87 (95)
15 2x1f_A MRNA 3'-END-processing 99.7 5.3E-17 1.8E-21 125.5 10.3 80 2-85 2-84 (96)
16 3ns6_A Eukaryotic translation 99.7 2E-17 6.8E-22 129.9 7.9 77 1-81 5-91 (100)
17 4a8x_A RNA-binding protein wit 99.7 4.7E-17 1.6E-21 122.8 9.6 78 2-83 4-85 (88)
18 2dnh_A Bruno-like 5, RNA bindi 99.7 5.2E-17 1.8E-21 127.1 10.0 80 2-85 15-99 (105)
19 2cqd_A RNA-binding region cont 99.7 7.5E-17 2.6E-21 128.7 11.0 84 2-92 17-103 (116)
20 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.6E-17 1.6E-21 126.7 9.5 80 2-85 12-94 (102)
21 2cq3_A RNA-binding protein 9; 99.7 1.2E-16 4.1E-21 124.8 11.9 80 2-85 15-95 (103)
22 2dgs_A DAZ-associated protein 99.7 1.2E-16 4.1E-21 124.0 11.6 79 2-85 10-91 (99)
23 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5.1E-17 1.7E-21 122.1 9.1 76 2-81 7-85 (85)
24 1x4a_A Splicing factor, argini 99.7 9.6E-17 3.3E-21 126.8 11.0 80 2-85 22-101 (109)
25 2cph_A RNA binding motif prote 99.7 9.6E-17 3.3E-21 125.7 10.9 81 2-85 15-99 (107)
26 2cq0_A Eukaryotic translation 99.7 5E-17 1.7E-21 127.0 9.2 80 2-85 15-97 (103)
27 3ucg_A Polyadenylate-binding p 99.7 5.6E-17 1.9E-21 122.8 8.9 77 2-83 6-85 (89)
28 2cpf_A RNA binding motif prote 99.7 8.3E-17 2.8E-21 124.4 9.8 80 2-85 5-90 (98)
29 1x5u_A Splicing factor 3B subu 99.7 8.9E-17 3.1E-21 125.7 9.9 80 2-85 15-97 (105)
30 2cq1_A PTB-like protein L; RRM 99.7 8.9E-17 3E-21 128.3 9.8 78 2-85 15-93 (101)
31 2jvr_A Nucleolar protein 3; RN 99.7 4.3E-17 1.5E-21 132.4 8.1 77 3-84 29-106 (111)
32 2dnm_A SRP46 splicing factor; 99.7 9.1E-17 3.1E-21 125.5 9.7 79 2-84 13-94 (103)
33 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-16 4.3E-21 122.3 10.3 76 2-81 16-94 (94)
34 1x5t_A Splicing factor 3B subu 99.7 7.4E-17 2.5E-21 124.0 9.0 80 2-85 5-88 (96)
35 2cpz_A CUG triplet repeat RNA- 99.7 6.9E-17 2.4E-21 128.7 9.0 80 2-85 25-107 (115)
36 2do4_A Squamous cell carcinoma 99.7 1.1E-16 3.7E-21 124.4 9.8 79 2-84 17-97 (100)
37 1x4h_A RNA-binding protein 28; 99.7 1.5E-16 5E-21 125.4 10.4 80 2-84 15-102 (111)
38 1wex_A Hypothetical protein (r 99.7 1.5E-16 5E-21 127.5 10.5 78 2-85 15-93 (104)
39 2cqc_A Arginine/serine-rich sp 99.7 1.2E-16 4E-21 122.5 9.6 77 2-82 15-94 (95)
40 3s7r_A Heterogeneous nuclear r 99.7 8.5E-17 2.9E-21 121.8 8.6 74 2-80 11-87 (87)
41 2d9p_A Polyadenylate-binding p 99.7 1.3E-16 4.4E-21 124.6 9.7 80 2-85 15-95 (103)
42 2dhg_A TRNA selenocysteine ass 99.7 1.1E-16 3.7E-21 125.0 9.1 80 2-85 9-92 (104)
43 2kt5_A RNA and export factor-b 99.7 1.8E-16 6.3E-21 128.1 10.7 80 2-85 35-116 (124)
44 1x5s_A Cold-inducible RNA-bind 99.7 9.8E-17 3.3E-21 124.9 8.6 80 2-85 12-94 (102)
45 2do0_A HnRNP M, heterogeneous 99.7 2.4E-16 8.3E-21 124.9 11.0 79 2-84 15-95 (114)
46 2cpi_A CCR4-NOT transcription 99.7 8.8E-17 3E-21 128.2 8.4 80 2-85 15-103 (111)
47 2ywk_A Putative RNA-binding pr 99.7 1.1E-16 3.8E-21 122.8 8.7 76 2-81 16-93 (95)
48 2dgv_A HnRNP M, heterogeneous 99.7 1.2E-16 4.2E-21 121.8 8.9 80 2-85 8-88 (92)
49 2div_A TRNA selenocysteine ass 99.7 5.3E-17 1.8E-21 125.7 6.9 80 1-84 8-95 (99)
50 2dgo_A Cytotoxic granule-assoc 99.7 2.3E-16 7.9E-21 125.5 10.7 80 2-85 15-97 (115)
51 2dis_A Unnamed protein product 99.7 1.5E-16 5.3E-21 125.1 9.5 81 2-85 8-94 (109)
52 1oo0_B CG8781-PA, drosophila Y 99.7 1.4E-16 4.9E-21 125.7 9.4 79 2-84 26-107 (110)
53 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.8E-17 1.3E-21 120.6 5.6 73 3-80 1-76 (77)
54 1p27_B RNA-binding protein 8A; 99.7 1.1E-16 3.8E-21 125.4 8.6 79 2-84 23-104 (106)
55 2mss_A Protein (musashi1); RNA 99.7 6E-17 2.1E-21 119.4 6.6 72 4-80 1-75 (75)
56 2err_A Ataxin-2-binding protei 99.7 1E-16 3.6E-21 127.6 8.5 79 2-84 29-108 (109)
57 2la6_A RNA-binding protein FUS 99.7 1.1E-16 3.8E-21 124.4 8.2 76 2-81 13-99 (99)
58 2krb_A Eukaryotic translation 99.7 8E-17 2.7E-21 121.1 7.2 73 2-78 1-81 (81)
59 1x4d_A Matrin 3; structural ge 99.7 1.1E-16 3.8E-21 128.4 8.4 76 2-83 15-92 (102)
60 3lqv_A PRE-mRNA branch site pr 99.7 2.6E-16 8.8E-21 125.2 10.4 79 1-83 7-85 (115)
61 2dgp_A Bruno-like 4, RNA bindi 99.7 1.7E-16 5.9E-21 124.3 9.2 81 2-85 13-98 (106)
62 2rs2_A Musashi-1, RNA-binding 99.7 3E-16 1E-20 125.2 10.6 78 2-84 25-105 (109)
63 2wbr_A GW182, gawky, LD47780P; 99.7 1.6E-16 5.6E-21 125.7 8.9 75 1-82 6-80 (89)
64 2cpe_A RNA-binding protein EWS 99.7 2.1E-16 7.3E-21 125.3 9.6 80 2-85 15-105 (113)
65 1x4e_A RNA binding motif, sing 99.7 7.1E-17 2.4E-21 121.7 6.5 74 2-79 5-81 (85)
66 2ad9_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 132.3 8.0 78 2-85 31-109 (119)
67 2hvz_A Splicing factor, argini 99.7 1.4E-16 4.7E-21 124.1 8.2 77 3-85 1-77 (101)
68 2nlw_A Eukaryotic translation 99.7 1.6E-16 5.5E-21 125.6 8.7 78 1-82 14-99 (105)
69 2fy1_A RNA-binding motif prote 99.7 2.4E-16 8.3E-21 127.2 9.8 80 2-85 7-88 (116)
70 3r27_A HnRNP L, heterogeneous 99.7 3.6E-16 1.2E-20 125.7 10.5 77 2-84 21-98 (100)
71 3n9u_C Cleavage and polyadenyl 99.7 1.8E-16 6E-21 135.2 9.0 76 3-82 56-136 (156)
72 1wg5_A Heterogeneous nuclear r 99.7 2.1E-16 7.2E-21 124.7 8.6 79 2-85 15-96 (104)
73 2dh8_A DAZ-associated protein 99.7 1.4E-16 4.7E-21 124.8 7.5 79 2-85 16-97 (105)
74 1p1t_A Cleavage stimulation fa 99.7 1.2E-16 4.2E-21 124.5 6.9 79 2-84 8-89 (104)
75 2cpy_A RNA-binding protein 12; 99.7 1.1E-16 3.9E-21 128.2 6.8 78 2-84 15-95 (114)
76 2jrs_A RNA-binding protein 39; 99.7 2.6E-16 9E-21 125.5 8.8 78 2-83 26-106 (108)
77 2khc_A Testis-specific RNP-typ 99.7 2.4E-16 8.3E-21 125.9 8.5 76 2-81 40-118 (118)
78 3ex7_B RNA-binding protein 8A; 99.7 3.6E-16 1.2E-20 126.2 9.6 80 2-85 22-104 (126)
79 2dng_A Eukaryotic translation 99.7 4.1E-16 1.4E-20 122.0 9.6 78 2-85 15-95 (103)
80 1wez_A HnRNP H', FTP-3, hetero 99.7 9.1E-17 3.1E-21 127.3 5.8 79 1-85 14-94 (102)
81 2e5j_A Methenyltetrahydrofolat 99.6 2.1E-16 7.1E-21 122.6 7.6 77 1-83 18-94 (97)
82 2cq4_A RNA binding motif prote 99.6 2.9E-16 9.9E-21 124.9 8.5 77 2-83 25-104 (114)
83 2kn4_A Immunoglobulin G-bindin 99.6 4.6E-16 1.6E-20 130.0 10.1 79 2-84 70-151 (158)
84 3ulh_A THO complex subunit 4; 99.6 3.8E-16 1.3E-20 122.5 8.9 76 2-81 29-106 (107)
85 1wi8_A EIF-4B, eukaryotic tran 99.6 5E-16 1.7E-20 121.7 9.4 78 2-85 15-96 (104)
86 1x4b_A Heterogeneous nuclear r 99.6 5.3E-16 1.8E-20 123.8 9.4 78 3-85 28-108 (116)
87 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.4E-16 8.4E-21 123.3 7.2 76 2-83 19-98 (100)
88 2kxn_B Transformer-2 protein h 99.6 5.3E-16 1.8E-20 127.9 9.5 79 2-84 46-127 (129)
89 2jwn_A Embryonic polyadenylate 99.6 4.3E-16 1.5E-20 125.4 8.7 78 3-85 37-117 (124)
90 1x4f_A Matrin 3; structural ge 99.6 1.8E-16 6.2E-21 129.6 6.5 76 2-83 25-102 (112)
91 1iqt_A AUF1, heterogeneous nuc 99.6 9.6E-17 3.3E-21 118.1 4.4 72 4-80 1-75 (75)
92 2ek1_A RNA-binding protein 12; 99.6 1.3E-16 4.5E-21 122.4 5.2 76 2-81 15-93 (95)
93 2ki2_A SS-DNA binding protein 99.6 6.2E-17 2.1E-21 123.3 3.3 78 3-85 2-82 (90)
94 2fc9_A NCL protein; structure 99.6 1.1E-15 3.8E-20 118.9 10.5 77 2-85 15-93 (101)
95 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.9E-16 2.4E-20 125.7 9.7 75 2-80 63-140 (140)
96 1u6f_A Tcubp1, RNA-binding pro 99.6 7.8E-16 2.7E-20 126.2 10.0 80 2-85 42-124 (139)
97 2dnq_A RNA-binding protein 4B; 99.6 1.4E-15 4.7E-20 116.3 10.6 75 2-85 8-82 (90)
98 2ytc_A PRE-mRNA-splicing facto 99.6 7.8E-16 2.7E-20 115.8 8.9 74 2-81 12-85 (85)
99 1x4c_A Splicing factor, argini 99.6 1.9E-15 6.5E-20 119.7 11.6 76 2-85 15-95 (108)
100 1why_A Hypothetical protein ri 99.6 1.3E-15 4.3E-20 118.0 10.3 76 2-84 17-94 (97)
101 1x4g_A Nucleolysin TIAR; struc 99.6 1.4E-15 4.8E-20 120.3 10.7 77 2-85 25-101 (109)
102 2cqg_A TDP-43, TAR DNA-binding 99.6 1.3E-15 4.6E-20 118.8 10.5 78 2-85 15-95 (103)
103 2db1_A Heterogeneous nuclear r 99.6 2E-16 7E-21 128.0 5.9 77 2-83 17-98 (118)
104 2lmi_A GRSF-1, G-rich sequence 99.6 1.4E-16 4.9E-21 126.3 4.7 77 2-83 11-92 (107)
105 2cqp_A RNA-binding protein 12; 99.6 1.8E-16 6E-21 122.6 5.1 78 2-83 15-95 (98)
106 2la4_A Nuclear and cytoplasmic 99.6 6.8E-16 2.3E-20 120.1 8.1 74 2-82 27-100 (101)
107 3d2w_A TAR DNA-binding protein 99.6 1.3E-15 4.5E-20 117.7 9.5 74 2-83 11-84 (89)
108 2xnq_A Nuclear polyadenylated 99.6 1.8E-15 6.1E-20 118.3 10.2 74 1-83 21-95 (97)
109 1nu4_A U1A RNA binding domain; 99.6 6.1E-16 2.1E-20 119.1 7.3 79 2-84 8-90 (97)
110 2dnn_A RNA-binding protein 12; 99.6 1.1E-15 3.8E-20 123.5 9.0 75 3-83 17-93 (109)
111 2hgl_A HNRPF protein, heteroge 99.6 2.7E-16 9.3E-21 131.9 5.5 77 2-83 44-125 (136)
112 2cqh_A IGF-II mRNA-binding pro 99.6 7.3E-16 2.5E-20 118.2 7.4 77 2-85 8-85 (93)
113 2a3j_A U1 small nuclear ribonu 99.6 1.2E-15 4.1E-20 126.5 9.1 79 2-84 29-111 (127)
114 1whx_A Hypothetical protein ri 99.6 1.8E-15 6.1E-20 121.2 9.7 76 3-85 11-86 (111)
115 3md3_A Nuclear and cytoplasmic 99.6 2.1E-15 7.2E-20 123.7 10.3 94 3-109 1-96 (166)
116 1wf1_A RNA-binding protein RAL 99.6 1.1E-15 3.8E-20 121.0 8.3 76 1-85 26-102 (110)
117 2dgw_A Probable RNA-binding pr 99.6 1.2E-15 4.2E-20 116.5 8.2 76 2-83 10-87 (91)
118 2dgt_A RNA-binding protein 30; 99.6 3.4E-15 1.2E-19 114.5 10.7 75 2-85 10-84 (92)
119 2m2b_A RNA-binding protein 10; 99.6 2.9E-16 9.8E-21 128.7 4.8 78 2-83 23-108 (131)
120 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.8E-15 6E-20 126.8 9.7 79 2-84 39-120 (156)
121 2xs2_A Deleted in azoospermia- 99.6 3.6E-16 1.2E-20 121.9 4.7 75 2-82 9-85 (102)
122 2lea_A Serine/arginine-rich sp 99.6 9.7E-16 3.3E-20 127.1 7.5 80 2-85 47-129 (135)
123 2dnp_A RNA-binding protein 14; 99.6 3.4E-15 1.2E-19 114.0 9.8 74 2-84 9-82 (90)
124 1fj7_A Nucleolin RBD1, protein 99.6 3.6E-16 1.2E-20 121.7 4.3 77 2-84 17-96 (101)
125 2jvo_A Nucleolar protein 3; nu 99.6 2.4E-15 8.3E-20 120.1 9.0 74 2-84 31-104 (108)
126 1wg1_A KIAA1579 protein, homol 99.6 1.7E-15 5.7E-20 115.7 7.6 76 2-85 5-80 (88)
127 2cpd_A Apobec-1 stimulating pr 99.6 9.1E-15 3.1E-19 113.5 11.9 76 2-84 15-90 (99)
128 2cpj_A Non-POU domain-containi 99.6 2.1E-15 7.2E-20 117.1 8.1 76 2-84 15-90 (99)
129 2cpx_A Hypothetical protein FL 99.6 2.6E-15 8.9E-20 119.1 8.7 79 2-85 25-107 (115)
130 2hgn_A Heterogeneous nuclear r 99.6 4.9E-16 1.7E-20 130.9 4.7 78 2-85 46-125 (139)
131 1x5o_A RNA binding motif, sing 99.6 2.7E-15 9.3E-20 119.1 8.8 76 2-81 25-110 (114)
132 4f02_A Polyadenylate-binding p 99.6 1.3E-15 4.4E-20 133.5 7.5 105 2-119 15-125 (213)
133 1l3k_A Heterogeneous nuclear r 99.6 3.6E-15 1.2E-19 126.3 10.0 98 2-109 13-113 (196)
134 2i2y_A Fusion protein consists 99.6 2.3E-15 7.7E-20 125.4 8.4 76 2-83 73-148 (150)
135 2dgu_A Heterogeneous nuclear r 99.6 6.7E-15 2.3E-19 115.2 10.7 74 3-85 12-85 (103)
136 2e5g_A U6 snRNA-specific termi 99.6 5.4E-15 1.8E-19 114.0 9.9 76 2-85 8-84 (94)
137 2hgm_A HNRPF protein, heteroge 99.6 1.3E-15 4.3E-20 126.6 6.7 76 2-82 42-120 (126)
138 2kvi_A Nuclear polyadenylated 99.6 1.7E-15 5.9E-20 117.4 7.1 75 2-85 10-85 (96)
139 2dha_A FLJ20171 protein; RRM d 99.6 4.9E-16 1.7E-20 128.3 4.2 76 2-82 23-104 (123)
140 4f02_A Polyadenylate-binding p 99.6 1.2E-15 4E-20 133.7 6.5 103 3-110 104-212 (213)
141 1wf0_A TDP-43, TAR DNA-binding 99.6 2.4E-15 8.3E-20 114.4 7.4 77 1-85 4-80 (88)
142 1fjc_A Nucleolin RBD2, protein 99.6 2.7E-15 9.2E-20 115.4 7.3 77 2-84 16-92 (96)
143 2j8a_A Histone-lysine N-methyl 99.6 1.3E-15 4.3E-20 128.8 5.8 79 1-82 1-95 (136)
144 2qfj_A FBP-interacting repress 99.6 6.5E-15 2.2E-19 126.6 10.3 80 2-85 125-207 (216)
145 3q2s_C Cleavage and polyadenyl 99.6 2E-15 6.8E-20 135.9 7.3 76 3-82 69-149 (229)
146 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3.7E-15 1.3E-19 126.5 8.4 79 3-85 73-154 (165)
147 1wel_A RNA-binding protein 12; 99.6 5.2E-16 1.8E-20 125.8 2.8 76 2-82 25-103 (124)
148 2cq2_A Hypothetical protein LO 99.6 5.5E-15 1.9E-19 121.4 8.8 77 2-85 25-108 (114)
149 2dnl_A Cytoplasmic polyadenyla 99.6 8.9E-15 3E-19 117.1 9.7 73 1-80 7-85 (114)
150 2fc8_A NCL protein; structure 99.6 7.3E-15 2.5E-19 114.2 8.9 77 2-85 15-94 (102)
151 1b7f_A Protein (SXL-lethal pro 99.6 8.5E-15 2.9E-19 120.9 9.6 94 2-110 3-99 (168)
152 1fxl_A Paraneoplastic encephal 99.6 9.4E-15 3.2E-19 119.9 9.6 93 2-109 2-97 (167)
153 2hzc_A Splicing factor U2AF 65 99.6 8E-15 2.7E-19 110.4 7.9 73 2-79 6-86 (87)
154 2lcw_A RNA-binding protein FUS 99.3 3.7E-16 1.3E-20 124.9 0.0 80 2-85 7-97 (116)
155 3nmr_A Cugbp ELAV-like family 99.5 1.1E-14 3.7E-19 120.7 8.7 76 3-81 96-175 (175)
156 3md3_A Nuclear and cytoplasmic 99.5 1.4E-14 4.9E-19 118.7 9.2 76 2-81 87-165 (166)
157 3tyt_A Heterogeneous nuclear r 99.5 1.8E-14 6.1E-19 127.2 10.4 77 2-84 4-81 (205)
158 1x5p_A Negative elongation fac 99.5 5.4E-14 1.8E-18 108.9 11.9 75 2-85 15-89 (97)
159 3beg_B Splicing factor, argini 99.5 1.1E-14 3.9E-19 117.0 8.1 75 2-84 16-95 (115)
160 2f3j_A RNA and export factor b 99.5 9.8E-15 3.4E-19 126.6 8.2 80 2-85 88-169 (177)
161 2voo_A Lupus LA protein; RNA-b 99.5 1E-14 3.4E-19 128.0 8.3 76 2-82 109-186 (193)
162 2g4b_A Splicing factor U2AF 65 99.5 1.2E-14 4.1E-19 120.7 8.2 75 2-80 94-171 (172)
163 2cjk_A Nuclear polyadenylated 99.5 9.6E-15 3.3E-19 120.7 7.2 76 3-83 88-166 (167)
164 2e44_A Insulin-like growth fac 99.5 2.1E-14 7.1E-19 110.4 8.6 78 2-84 15-93 (96)
165 1qm9_A Polypyrimidine tract-bi 99.5 4.1E-14 1.4E-18 121.0 11.0 79 1-85 1-81 (198)
166 2cjk_A Nuclear polyadenylated 99.5 1.9E-14 6.4E-19 119.0 7.9 76 2-83 3-81 (167)
167 2qfj_A FBP-interacting repress 99.5 3.4E-14 1.2E-18 122.1 9.7 78 2-83 28-108 (216)
168 3egn_A RNA-binding protein 40; 99.5 1E-14 3.6E-19 120.4 6.1 79 2-84 45-131 (143)
169 1l3k_A Heterogeneous nuclear r 99.5 3E-14 1E-18 120.6 8.8 78 3-85 105-185 (196)
170 1sjr_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 122.8 9.7 77 4-85 48-126 (164)
171 2yh0_A Splicing factor U2AF 65 99.5 3.3E-14 1.1E-18 120.6 8.2 79 2-84 114-195 (198)
172 3nmr_A Cugbp ELAV-like family 99.5 3.3E-14 1.1E-18 117.8 7.9 95 2-109 3-104 (175)
173 2e5i_A Heterogeneous nuclear r 99.5 1.7E-13 5.8E-18 113.7 10.8 75 4-85 27-104 (124)
174 3zzy_A Polypyrimidine tract-bi 99.5 1.8E-13 6.2E-18 114.7 10.7 78 4-87 30-110 (130)
175 2adc_A Polypyrimidine tract-bi 99.5 1.5E-13 5.1E-18 121.6 10.1 78 2-85 34-112 (229)
176 1b7f_A Protein (SXL-lethal pro 99.5 1.2E-13 4.2E-18 113.8 8.8 75 2-80 89-168 (168)
177 3pgw_S U1-70K; protein-RNA com 99.5 1.1E-13 3.8E-18 135.7 9.9 79 3-85 103-184 (437)
178 1fje_B Nucleolin RBD12, protei 99.5 1.8E-13 6E-18 114.4 9.6 76 2-83 99-174 (175)
179 2bz2_A Negative elongation fac 99.5 1.6E-13 5.3E-18 112.0 8.4 75 2-85 39-113 (121)
180 3pgw_A U1-A; protein-RNA compl 99.5 2.1E-13 7.2E-18 122.9 10.0 79 2-84 9-91 (282)
181 2pe8_A Splicing factor 45; RRM 99.4 3.3E-13 1.1E-17 108.1 9.9 81 1-85 7-96 (105)
182 1fxl_A Paraneoplastic encephal 99.4 2.4E-13 8.3E-18 111.4 8.6 74 2-79 88-166 (167)
183 1fje_B Nucleolin RBD12, protei 99.4 6.7E-14 2.3E-18 116.9 5.1 94 2-109 13-108 (175)
184 2yh0_A Splicing factor U2AF 65 99.4 7.8E-13 2.7E-17 112.1 11.2 75 1-83 3-88 (198)
185 3smz_A Protein raver-1, ribonu 99.4 5.9E-13 2E-17 120.1 10.6 97 2-110 95-194 (284)
186 3u1l_A PRE-mRNA-splicing facto 99.4 6E-13 2E-17 121.9 9.3 77 2-85 134-231 (240)
187 3sde_A Paraspeckle component 1 99.4 3.5E-13 1.2E-17 121.6 7.6 79 2-83 96-179 (261)
188 2diu_A KIAA0430 protein; struc 99.4 8.9E-13 3E-17 105.6 8.8 70 3-83 9-84 (96)
189 2ghp_A U4/U6 snRNA-associated 99.4 9.3E-13 3.2E-17 119.2 9.9 100 2-109 117-219 (292)
190 1jmt_A Splicing factor U2AF 35 99.4 2.3E-13 7.8E-18 108.6 4.8 71 6-80 19-103 (104)
191 3smz_A Protein raver-1, ribonu 99.4 6.5E-13 2.2E-17 119.8 7.9 80 2-85 184-266 (284)
192 2dit_A HIV TAT specific factor 99.4 1.3E-12 4.5E-17 104.3 8.8 77 2-83 15-102 (112)
193 3pgw_A U1-A; protein-RNA compl 99.4 1.4E-12 4.7E-17 117.5 9.7 73 3-81 208-281 (282)
194 2g4b_A Splicing factor U2AF 65 99.4 1.4E-12 4.8E-17 108.1 9.0 77 2-83 4-88 (172)
195 2ghp_A U4/U6 snRNA-associated 99.4 1.1E-12 3.9E-17 118.6 8.8 77 2-83 210-291 (292)
196 1qm9_A Polypyrimidine tract-bi 99.4 9.3E-13 3.2E-17 112.5 7.6 77 2-84 120-198 (198)
197 2adc_A Polypyrimidine tract-bi 99.4 2.6E-12 8.8E-17 113.6 10.3 77 2-84 151-229 (229)
198 3tyt_A Heterogeneous nuclear r 99.3 6.8E-13 2.3E-17 117.0 6.0 67 3-73 124-193 (205)
199 3sde_A Paraspeckle component 1 99.3 3.9E-12 1.3E-16 114.8 8.3 72 3-81 23-94 (261)
200 3v4m_A Splicing factor U2AF 65 99.3 8.1E-12 2.8E-16 99.8 8.0 79 2-84 5-98 (105)
201 3tht_A Alkylated DNA repair pr 99.3 8.4E-12 2.9E-16 119.7 9.4 74 2-81 18-97 (345)
202 2d9o_A DNAJ (HSP40) homolog, s 99.2 1E-10 3.6E-15 93.2 11.0 65 12-84 27-91 (100)
203 3ue2_A Poly(U)-binding-splicin 99.2 4.6E-11 1.6E-15 97.8 7.5 79 2-84 20-110 (118)
204 3s6e_A RNA-binding protein 39; 99.0 3.9E-10 1.3E-14 91.9 6.6 64 15-83 30-93 (114)
205 1owx_A Lupus LA protein, SS-B, 98.9 6.3E-09 2.2E-13 86.2 9.1 73 2-80 18-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 98.8 1.5E-08 5.1E-13 80.3 7.3 73 3-85 8-88 (91)
207 3dxb_A Thioredoxin N-terminall 98.7 1.2E-08 3.9E-13 89.7 5.6 68 14-85 141-215 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.5 9.9E-08 3.4E-12 76.2 5.2 67 3-79 16-91 (95)
209 1u6p_A GAG polyprotein; MLV, A 98.0 3E-06 1E-10 61.5 2.6 27 268-294 17-43 (56)
210 2dhx_A Poly (ADP-ribose) polym 97.9 5.2E-05 1.8E-09 61.3 9.6 73 2-81 8-82 (104)
211 1a6b_B Momulv, zinc finger pro 97.9 3.1E-06 1.1E-10 57.4 1.6 24 270-293 6-29 (40)
212 2l9w_A U4/U6 snRNA-associated- 97.4 0.00043 1.5E-08 56.9 7.9 74 2-79 21-96 (117)
213 1nc8_A Nucleocapsid protein; H 97.2 9.9E-05 3.4E-09 46.3 1.2 21 272-292 4-24 (29)
214 1dsq_A Nucleic acid binding pr 96.9 0.00024 8.2E-09 43.5 1.0 20 274-293 2-21 (26)
215 2kn4_A Immunoglobulin G-bindin 96.9 0.00085 2.9E-08 55.2 4.3 32 34-65 2-34 (158)
216 2ysa_A Retinoblastoma-binding 96.1 0.0014 4.7E-08 47.2 1.0 19 274-292 7-25 (55)
217 1wwh_A Nucleoporin 35, nucleop 95.4 0.061 2.1E-06 44.3 8.3 68 4-80 26-94 (119)
218 2i2y_A Fusion protein consists 95.2 0.016 5.5E-07 47.3 4.3 64 43-109 12-82 (150)
219 2a51_A Nucleocapsid protein; s 94.8 0.0072 2.5E-07 39.8 0.7 19 274-292 21-39 (39)
220 2ec7_A GAG polyprotein (PR55GA 94.5 0.012 4E-07 40.7 1.2 19 274-292 27-45 (49)
221 2a51_A Nucleocapsid protein; s 94.4 0.01 3.5E-07 39.1 0.7 18 275-292 1-18 (39)
222 2bl6_A Nucleocapsid protein P1 94.3 0.012 3.9E-07 38.4 0.8 18 275-292 20-37 (37)
223 2bl6_A Nucleocapsid protein P1 94.0 0.015 5.1E-07 37.8 1.0 17 276-292 2-18 (37)
224 1cl4_A Protein (GAG polyprotei 93.7 0.018 6.2E-07 41.1 1.1 21 273-293 29-49 (60)
225 2ihx_A Nucleocapsid (NC) prote 93.6 0.018 6.3E-07 41.5 0.9 21 274-294 30-50 (61)
226 2li8_A Protein LIN-28 homolog 93.5 0.028 9.5E-07 42.4 1.8 19 274-292 46-64 (74)
227 1a1t_A Nucleocapsid protein; s 93.5 0.018 6.2E-07 40.4 0.7 19 274-292 33-51 (55)
228 2cqf_A RNA-binding protein LIN 93.5 0.027 9.2E-07 40.9 1.6 20 274-293 29-48 (63)
229 2ihx_A Nucleocapsid (NC) prote 93.3 0.028 9.5E-07 40.5 1.5 20 274-293 4-23 (61)
230 2ec7_A GAG polyprotein (PR55GA 93.3 0.024 8.2E-07 39.1 1.0 21 272-292 4-24 (49)
231 3pq1_A Poly(A) RNA polymerase; 93.0 0.034 1.2E-06 55.2 2.0 56 3-64 54-109 (464)
232 1cl4_A Protein (GAG polyprotei 92.9 0.019 6.5E-07 41.0 0.0 19 275-293 2-20 (60)
233 1a1t_A Nucleocapsid protein; s 92.6 0.031 1E-06 39.2 0.8 21 272-292 10-30 (55)
234 2cqf_A RNA-binding protein LIN 92.4 0.047 1.6E-06 39.6 1.6 19 274-292 7-25 (63)
235 2li8_A Protein LIN-28 homolog 92.2 0.05 1.7E-06 41.0 1.5 22 271-292 21-42 (74)
236 3ts2_A Protein LIN-28 homolog 92.0 0.05 1.7E-06 46.0 1.5 20 274-293 119-138 (148)
237 3nyb_B Protein AIR2; polya RNA 91.5 0.056 1.9E-06 41.7 1.2 22 272-293 44-65 (83)
238 3ctr_A Poly(A)-specific ribonu 91.4 0.2 6.9E-06 40.1 4.3 53 5-65 8-60 (101)
239 1wey_A Calcipressin 1; structu 91.1 0.58 2E-05 37.6 6.8 74 3-83 6-84 (104)
240 3ts2_A Protein LIN-28 homolog 90.5 0.1 3.4E-06 44.1 1.9 19 274-292 97-115 (148)
241 1whv_A Poly(A)-specific ribonu 90.1 0.27 9.3E-06 39.3 4.0 53 5-65 18-70 (100)
242 3nyb_B Protein AIR2; polya RNA 89.9 0.098 3.3E-06 40.3 1.2 21 273-293 4-24 (83)
243 2lli_A Protein AIR2; RNA surve 87.2 0.16 5.6E-06 40.9 0.9 21 272-292 103-123 (124)
244 3p3d_A Nucleoporin 53; structu 86.8 0.92 3.2E-05 37.9 5.3 73 4-82 9-98 (132)
245 1uw4_A UPF3X; nonsense mediate 86.1 2.8 9.7E-05 32.5 7.5 67 3-72 2-73 (91)
246 2lli_A Protein AIR2; RNA surve 79.6 0.65 2.2E-05 37.3 1.5 20 274-293 64-83 (124)
247 2l08_A Regulator of nonsense t 58.8 16 0.00056 28.7 5.3 63 2-67 9-76 (97)
248 3p8b_B Transcription antitermi 57.4 34 0.0011 28.0 7.3 114 32-158 33-146 (152)
249 3d45_A Poly(A)-specific ribonu 54.9 25 0.00086 34.7 7.2 53 4-65 442-494 (507)
250 3rfr_C PMOC; membrane, oxidore 44.1 3.8 0.00013 37.5 -0.6 12 188-199 137-148 (256)
251 2ct7_A Ring finger protein 31; 43.4 7.5 0.00026 29.2 1.0 27 273-299 50-79 (86)
252 1yew_C Particulate methane mon 40.4 4.7 0.00016 37.4 -0.6 13 187-199 163-175 (289)
253 4e8u_A Putative uncharacterize 30.5 44 0.0015 28.8 3.9 51 4-57 14-75 (172)
254 2g0c_A ATP-dependent RNA helic 26.4 1.1E+02 0.0037 21.6 4.9 64 11-81 10-75 (76)
255 1wii_A Hypothetical UPF0222 pr 24.3 31 0.0011 26.4 1.7 13 271-283 20-32 (85)
256 2lea_A Serine/arginine-rich sp 21.2 23 0.00077 28.1 0.3 21 46-66 6-26 (135)
257 1yg0_A COP associated protein; 21.1 1.6E+02 0.0055 18.3 6.4 58 1-64 1-61 (66)
258 3tqs_A Ribosomal RNA small sub 20.4 32 0.0011 30.6 1.1 29 6-37 100-128 (255)
No 1
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=139.46 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=72.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCc-eEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEG-TVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
+++|||+|||+++|++||+++|+++ | +|.+|+|+.|+. +||||||+|++.++|++|++.++++..++|+.|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~---G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH---GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH---TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 5799999999999999999999999 8 899999999875 99999999999999999999886677899999999
Q ss_pred ecCCCC
Q 022209 78 SDAQRR 83 (301)
Q Consensus 78 ~~a~~d 83 (301)
+.|.+.
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 987644
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=9.2e-19 Score=140.83 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=72.5
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
.+|||||||+++|++||+++|++| |.|.+|+|+.|+. +||||||+|++.++|++||+.+++ ..++|+.|+|..+.
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~---G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~-~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG-MLLNDRKVFVGRFK 81 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTT-CEETTEECEEEESS
T ss_pred CEEEECCCCCCCCHHHHHHHHhcc---CCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEECC
Confidence 479999999999999999999999 9999999999987 999999999999999999999974 68999999999887
Q ss_pred CCC
Q 022209 82 RRT 84 (301)
Q Consensus 82 ~di 84 (301)
...
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=137.55 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=71.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||||||+++|++||+++|++| |+|.+++|+.|+. +||||||+|++.++|++|++.++ +..++|+.|+|+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-g~~~~gr~l~V~ 94 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN-GLRLQSKTIKVS 94 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC-CCEECCEEEEEE
Confidence 4689999999999999999999999 9999999999875 89999999999999999999997 468999999999
Q ss_pred cCCC
Q 022209 79 DAQR 82 (301)
Q Consensus 79 ~a~~ 82 (301)
.|++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 8753
No 4
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=1.7e-18 Score=133.00 Aligned_cols=79 Identities=9% Similarity=0.110 Sum_probs=67.3
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCc--eEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEG--TVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G--~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
.+|||||||+++|++||+++|+++ | .|.+++|+.|+. +||||||+|++.++|++|++.+|+ ..++|+.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~---G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g-~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL---GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK-RELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT---TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG-SCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh---CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC-CeeCCEEEEE
Confidence 379999999999999999999999 9 999999999874 899999999999999999999974 6899999999
Q ss_pred ecCCCCCC
Q 022209 78 SDAQRRTP 85 (301)
Q Consensus 78 ~~a~~di~ 85 (301)
..+..+..
T Consensus 78 ~~~~~~~~ 85 (90)
T 3p5t_L 78 TPSNKLEH 85 (90)
T ss_dssp CCC-----
T ss_pred EECCCCcc
Confidence 99887764
No 5
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=128.81 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=73.5
Q ss_pred CceEEEeCCCccccHHHHH----HHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVK----EFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk----~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
+.+|||||||+.+++++|+ ++|++| |+|.+|+|..|+..||||||+|++.++|++||+.+| +..++|+.|+|
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~---G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~-g~~~~gr~l~V 84 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARH---GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLH-RYKIGSKKILV 84 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHH---SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHT-TEEETTEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhcccc---CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhC-CCEECCeEEEE
Confidence 4689999999999999999 999999 999999999998779999999999999999999997 46899999999
Q ss_pred ecCCCCCC
Q 022209 78 SDAQRRTP 85 (301)
Q Consensus 78 ~~a~~di~ 85 (301)
+.|.....
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99876643
No 6
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-18 Score=133.87 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=69.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCc--eEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCC---ccccce
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEG--TVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVR---LSYGNS 73 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G--~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~---l~~~gr 73 (301)
+.||||+|||+++|+++|+++|++| | +|.+|+|+.|+. |||||||+|++.++|++|++.+++. +.++||
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~---G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPY---ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTT---CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhh---CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 3589999999999999999999999 7 577999998875 9999999999999999999999842 468999
Q ss_pred eEEEecCCC
Q 022209 74 YLKASDAQR 82 (301)
Q Consensus 74 ~LkV~~a~~ 82 (301)
.|+|+.|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999998763
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=126.33 Aligned_cols=80 Identities=10% Similarity=0.132 Sum_probs=73.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+++|||+|||+.+|++||+++|++| |.|.+++|..++. +||||||+|++.++|+.|++.++ +..++|+.|+|.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~ 83 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAY---GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD-GQVFQGRMLHVL 83 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT-TEESSSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC-CCEECCcEEEEE
Confidence 4689999999999999999999999 9999999999874 99999999999999999999987 478999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.....
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9888754
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=133.16 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=72.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.+++++|+++|++| |.|.+|+|+.|+. |||||||+|++.++|++||+.+| +..++|+.|+|.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~---G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln-g~~~~gr~i~V~ 81 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKY---GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH-LTSVMGNIIHAQ 81 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc---CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEE
Confidence 4689999999999999999999999 9999999999875 89999999999999999999997 468999999999
Q ss_pred cCCCC
Q 022209 79 DAQRR 83 (301)
Q Consensus 79 ~a~~d 83 (301)
.|...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 87654
No 9
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=132.93 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=69.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.++|||||||+++|+++|+++|++| |+|.+|+|+.|+. +||||||+|+++++|+.|++ ++ +..++|+.|.|..
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~---G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~-~~~~~gr~l~V~~ 85 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDK---GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TP-GQKYKETDLLILF 85 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTS---SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SS-CCCCTTTTCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhc---CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cC-CCEECCEEEEEEE
Confidence 5799999999999999999999999 9999999999876 99999999999999999999 54 5789999999986
Q ss_pred CCC
Q 022209 80 AQR 82 (301)
Q Consensus 80 a~~ 82 (301)
+.+
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 544
No 10
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=134.00 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=71.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-CCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~LkV~~a 80 (301)
+.+|||||||+++|++||+++|++| |+|.+|+|+.+ ||||||+|++.++|+.||+.++ ++..++|+.|+|+.|
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~f---G~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPF---GKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHH---CCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 5789999999999999999999999 99999999976 7999999999999999999886 457899999999998
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
....+
T Consensus 90 ~~~~~ 94 (105)
T 1sjq_A 90 NHKEL 94 (105)
T ss_dssp SSSSC
T ss_pred CCCCC
Confidence 87765
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=3.1e-17 Score=122.76 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=71.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+.++++||+++|+++ |.|.+++|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDF---PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG-QDLNGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTS---TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcC-CeeCCcEEEEE
Confidence 4689999999999999999999999 9999999998854 899999999999999999999874 67899999999
Q ss_pred cCCCC
Q 022209 79 DAQRR 83 (301)
Q Consensus 79 ~a~~d 83 (301)
.+...
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 87654
No 12
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.2e-17 Score=126.44 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=74.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
.++|||+|||+.+++++|+++|++| |.|.+|+|..++. +||||||+|++.++|++|++.++ +..++|+.|+|..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQI---GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN-GRKILGKEVKVNWA 90 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHH---SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHT-TEEETTEEEEEEEC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhc---CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhC-CCCcCCCeEEEEEC
Confidence 4689999999999999999999999 9999999999877 99999999999999999999887 46789999999998
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 87654
No 13
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=124.50 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=70.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||++++++||+++|+++ |.|.+++|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|+
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 81 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPF---GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG-QWLGGRQIRTN 81 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEE
Confidence 3589999999999999999999999 9999999999864 899999999999999999999974 68999999999
Q ss_pred cCCCC
Q 022209 79 DAQRR 83 (301)
Q Consensus 79 ~a~~d 83 (301)
.|..+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 87654
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.1e-17 Score=123.57 Aligned_cols=80 Identities=8% Similarity=0.180 Sum_probs=73.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+.+|++||+++|+++ |.|..++|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 80 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPF---GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPMRVG 80 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT-CCSSSSCCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC-CeeCCcEEEEE
Confidence 4689999999999999999999999 9999999999865 899999999999999999999874 68899999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.....
T Consensus 81 ~a~~~~~ 87 (95)
T 2dnz_A 81 HVTERLD 87 (95)
T ss_dssp ESSCCCC
T ss_pred EcccccC
Confidence 9877654
No 15
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=5.3e-17 Score=125.54 Aligned_cols=80 Identities=13% Similarity=0.188 Sum_probs=73.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+++|||+|||+.++++||+++|+++ |.|.+++|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV---GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG-YQLGSRFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEE
Confidence 4789999999999999999999999 9999999998864 899999999999999999999974 68999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.....
T Consensus 78 ~a~~~~~ 84 (96)
T 2x1f_A 78 YSSNSDI 84 (96)
T ss_dssp ECSCSSG
T ss_pred EcCCCCC
Confidence 9887654
No 16
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=2e-17 Score=129.92 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=71.1
Q ss_pred CCceEEEeCCCc------cccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCcccc
Q 022209 1 MAKKISLYGFAS------HVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYG 71 (301)
Q Consensus 1 M~~tI~Vgnlp~------~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~ 71 (301)
++++|||+|||+ .+++++|+++|++| |.|.+|+|+.|+. +||||||+|++.++|++||+.+|+ ..++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~---G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng-~~~~ 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA---GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG-KRLD 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CBSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc---CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC-cccC
Confidence 367999999999 99999999999999 9999999999875 999999999999999999999974 6788
Q ss_pred c-eeEEEecCC
Q 022209 72 N-SYLKASDAQ 81 (301)
Q Consensus 72 g-r~LkV~~a~ 81 (301)
| +.|+|+.|.
T Consensus 81 g~r~l~V~~a~ 91 (100)
T 3ns6_A 81 LKHRLFLYTMK 91 (100)
T ss_dssp SSCBCEEEESH
T ss_pred CCeEEEEEECc
Confidence 8 999999864
No 17
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=122.77 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=71.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC----CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~----SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
+.+|||+|||+++|++||+++|+++ |.|.+++|..++. ++|||||+|++.++|++|++.++ +..++|+.|+|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTY---GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD-GGQIDGQEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT-TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC-CCeECCeEEEE
Confidence 4689999999999999999999999 9999999998875 89999999999999999999987 46899999999
Q ss_pred ecCCCC
Q 022209 78 SDAQRR 83 (301)
Q Consensus 78 ~~a~~d 83 (301)
+.+..+
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 987543
No 18
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=5.2e-17 Score=127.06 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=72.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccc---eeEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGN---SYLK 76 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~g---r~Lk 76 (301)
+++|||+|||+.+++++|+++|++| |.|.+++|..+++ +||||||+|++.++|+.|++.+++. .+.| +.|+
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~gg~~~~l~ 90 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPF---GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS-QTMPGASSSLV 90 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSC-CCCTTCSSCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCC-ccCCCCCccEE
Confidence 4689999999999999999999999 9999999999876 8999999999999999999999854 4555 9999
Q ss_pred EecCCCCCC
Q 022209 77 ASDAQRRTP 85 (301)
Q Consensus 77 V~~a~~di~ 85 (301)
|..|..+.-
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999988765
No 19
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.5e-17 Score=128.72 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=75.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.+|++||+++|++| |.|.+|+|..++. +||||||+|++.++|++||+.+++ .++|+.|+|.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g~~l~V~ 91 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGF---GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDGRKANVN 91 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTT---SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCCEEEEEE
Confidence 3689999999999999999999999 9999999999865 999999999999999999999874 7999999999
Q ss_pred cCCCCCCCCCCCCC
Q 022209 79 DAQRRTPHYAKRGI 92 (301)
Q Consensus 79 ~a~~di~~~pRp~~ 92 (301)
.+..... ||+..
T Consensus 92 ~a~~~~~--~~~~~ 103 (116)
T 2cqd_A 92 LAYLGAK--PRSLQ 103 (116)
T ss_dssp ESTTTCC--CCCCC
T ss_pred EcccCCC--ccccC
Confidence 9987755 55543
No 20
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=126.73 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=73.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.+|++||+++|+++ |.|.+++|..++. +||||||+|++.++|+.|++.++ +..++|+.|+|.
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V~ 87 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-ESELFGRTIRVN 87 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTT---SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT-TEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcc---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCcEEEEE
Confidence 4689999999999999999999999 9999999998865 89999999999999999999987 478999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.....
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9887765
No 21
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=124.80 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=74.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
.++|||+|||+.+|+++|+++|++| |.|.+|+|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a 90 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQF---GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG-TVVEGRKIEVNNA 90 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGT---SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEEEc
Confidence 4689999999999999999999999 9999999999876 999999999999999999999874 6799999999998
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2cq3_A 91 TARVM 95 (103)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 87764
No 22
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=123.96 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=72.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.++++||+++|+++ |.|..|+|+.++. +||||||+|++.++|++|++ ++ +..++|+.|+|.
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~-~~~~~g~~l~V~ 84 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKF---GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH-FHDIMGKKVEVK 84 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSS---SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC-CCBSSSCBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC-CCEECCeEEEEE
Confidence 5789999999999999999999999 9999999999865 89999999999999999999 65 468999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.....
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9877654
No 23
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=5.1e-17 Score=122.06 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=69.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.+++++|+++|+++ |.|.+++|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|+
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 82 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE-SELFGRTIRVN 82 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGG---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhcc---CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEE
Confidence 4689999999999999999999999 9999999998854 899999999999999999999874 68899999998
Q ss_pred cCC
Q 022209 79 DAQ 81 (301)
Q Consensus 79 ~a~ 81 (301)
.|+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 764
No 24
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.6e-17 Score=126.77 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=73.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
.++|||+|||+.+|++||+++|++| |.|..|+|..+..+||||||+|++.++|++|++.+++ ..++|+.|+|..+.
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKY---GAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG-YDYDGYRLRVEFPR 97 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT-CEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEEcc
Confidence 3689999999999999999999999 9999999988877999999999999999999999974 58899999999987
Q ss_pred CCCC
Q 022209 82 RRTP 85 (301)
Q Consensus 82 ~di~ 85 (301)
.+.-
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 25
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=9.6e-17 Score=125.68 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=73.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecC-CC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQN-KG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~d-r~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
..+|||+|||+.+|+++|+++|++| |.|.+|+|..+ +. +||||||+|++.++|++|++.++++..++|+.|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTF---GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHcc---CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 4689999999999999999999999 99999999988 33 89999999999999999999993357899999999
Q ss_pred ecCCCCCC
Q 022209 78 SDAQRRTP 85 (301)
Q Consensus 78 ~~a~~di~ 85 (301)
..+..+..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99887654
No 26
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5e-17 Score=126.95 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=73.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+++|||+|||+.+++++|+++|++| |.|.+|+|..++. +||||||+|++.++|++|++.+++ ..++|+.|+|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 90 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPF---GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG-FGYDHLILNVE 90 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTT---CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT-CEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC-CeeCCcEEEEE
Confidence 4689999999999999999999999 9999999998864 899999999999999999999974 67999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+..+..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9887764
No 27
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=5.6e-17 Score=122.82 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=70.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+++|||+|||+++|+++|+++|+++ |.|.+++|..++. +||||||+|.+.++|++|+ .++ +..++|+.|+|+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~-g~~~~g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC---GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALD-ESLFRGRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG---CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGT-TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcC-CCEECCcEEEEE
Confidence 3689999999999999999999999 9999999998864 8999999999999999999 776 467999999999
Q ss_pred cCCCC
Q 022209 79 DAQRR 83 (301)
Q Consensus 79 ~a~~d 83 (301)
.+...
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 87664
No 28
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.3e-17 Score=124.41 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=73.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC------CCCeEEEEeCCHHHHHHHHHHhCCCccccceeE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG------SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYL 75 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~------SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~L 75 (301)
+++|||+|||+.+|+++|+++|+++ |.|.+++|..++. +||||||+|++.++|++|++.+++ ..++|+.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 80 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKV---GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG-HTVDGHKL 80 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT-CEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC-CeeCCeEE
Confidence 4689999999999999999999999 9999999998753 789999999999999999999874 68999999
Q ss_pred EEecCCCCCC
Q 022209 76 KASDAQRRTP 85 (301)
Q Consensus 76 kV~~a~~di~ 85 (301)
+|+.+.....
T Consensus 81 ~V~~a~~~~~ 90 (98)
T 2cpf_A 81 EVRISERATK 90 (98)
T ss_dssp EEECSSCSSC
T ss_pred EEEEccCCCC
Confidence 9999888765
No 29
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.9e-17 Score=125.70 Aligned_cols=80 Identities=14% Similarity=0.213 Sum_probs=73.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+|+++|+++|+++ |.|.+|+|..++. +||||||+|++.++|++|++.+++ ..++|+.|+|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 90 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQA---GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM-IKLYGKPIRVN 90 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS-CBCSSCBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEE
Confidence 4689999999999999999999999 9999999999874 999999999999999999999874 67999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+..+.-
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9877653
No 30
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.9e-17 Score=128.27 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=71.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-CCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~LkV~~a 80 (301)
+++|||+|||+.+|++||+++|++| |.|.++.|..+ ||||||+|++.++|+.|++.++ +...++|+.|+|+.|
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~f---G~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPF---GKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTT---SCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 5789999999999999999999999 99999999875 7999999999999999999876 567899999999998
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
....+
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 87765
No 31
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=4.3e-17 Score=132.44 Aligned_cols=77 Identities=9% Similarity=0.112 Sum_probs=69.3
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCc-eEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEG-TVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
.+|||||||+++|++||+++|+++ | +|..++|..++ +||||||+|++.++|+.||+.+| +..++|+.|+|..+.
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~---G~~v~~v~i~~~~-~rGfaFV~F~~~e~A~~Ai~~ln-g~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLAREN---SLETTFSSVNTRD-FDGTGALEFPSEEILVEALERLN-NIEFRGSVITVERDD 103 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHH---TCCCSEEECSSCS-SSCCEEEEESSHHHHHHHHHHTT-TEEETTEEEEEEESC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHh---CCeeEEEEEEcCC-CCCEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEEECC
Confidence 489999999999999999999999 9 89999997544 99999999999999999999997 578999999999987
Q ss_pred CCC
Q 022209 82 RRT 84 (301)
Q Consensus 82 ~di 84 (301)
.++
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.1e-17 Score=125.48 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=73.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+++|||+|||+.++++||+++|+++ |.|..++|..++. +||||||+|++.++|++|++.+++ ..++|+.|+|.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~ 88 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKY---GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG-AELDGRELRVQ 88 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS-CCBTTBCCEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC-CEECCcEEEEE
Confidence 4689999999999999999999999 9999999998865 899999999999999999999874 67999999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.+....
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 988764
No 33
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=122.30 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=70.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.++++||+++|+++ |.|.+++|..++. +||||||+|++.++|++|++.++ +..++|+.|+|+
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~ 91 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKY---GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN-NKQLFGRVIKAS 91 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTT---SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT-TEEETTEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC-CCeeCCcEEEEE
Confidence 4689999999999999999999999 9999999998865 89999999999999999999987 478999999998
Q ss_pred cCC
Q 022209 79 DAQ 81 (301)
Q Consensus 79 ~a~ 81 (301)
.|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 763
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.4e-17 Score=124.00 Aligned_cols=80 Identities=11% Similarity=0.175 Sum_probs=73.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEE-EeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDV-EVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~-~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
+.+|||+|||+.+|+++|+++|+++ |.|.++ +|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 80 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAF---GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG-QYLCNRPITV 80 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT---SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT-CEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCC-CEECCEEEEE
Confidence 4689999999999999999999999 999999 9998854 899999999999999999998874 5789999999
Q ss_pred ecCCCCCC
Q 022209 78 SDAQRRTP 85 (301)
Q Consensus 78 ~~a~~di~ 85 (301)
+.+....-
T Consensus 81 ~~a~~~~~ 88 (96)
T 1x5t_A 81 SYAFKKDS 88 (96)
T ss_dssp EESCCCCC
T ss_pred EEecccCC
Confidence 99877653
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.69 E-value=6.9e-17 Score=128.75 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=73.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.++++||+++|++| |.|.+++|..++. +||||||+|++.++|++|++.+++ ..++|+.|+|.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 100 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPF---GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG-FQIGMKRLKVQ 100 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGG---SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 3689999999999999999999999 9999999999874 889999999999999999999974 68999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+..+..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9887765
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=124.44 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=72.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.++|||+|||+.+|++||+++|+++ |.|.+++|..+++ +||||||+|.+.++|+.|++.+++ ..++|+.|+|..
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~ 92 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAH---GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDG-MTIKENIIKVAI 92 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT-EESSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEEE
Confidence 4689999999999999999999999 9999999999886 889999999999999999999974 789999999998
Q ss_pred CCCCC
Q 022209 80 AQRRT 84 (301)
Q Consensus 80 a~~di 84 (301)
+....
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 76653
No 37
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=125.39 Aligned_cols=80 Identities=25% Similarity=0.243 Sum_probs=73.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhC-C----Cccccce
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLAS-V----RLSYGNS 73 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~-~----~l~~~gr 73 (301)
+++|||+|||+.+|+++|+++|++| |.|..|+|..|+. +||||||+|++.++|+.|++.++ + +..++|+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQF---GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4689999999999999999999999 9999999998865 89999999999999999999996 1 5789999
Q ss_pred eEEEecCCCCC
Q 022209 74 YLKASDAQRRT 84 (301)
Q Consensus 74 ~LkV~~a~~di 84 (301)
.|+|..+....
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999987664
No 38
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=127.52 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=71.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-CCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~LkV~~a 80 (301)
+++|||+|||+.++++||+++|++| |.|.++.|+.+ ||||||+|++.++|+.|++.++ +.+.++|+.|+|..+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~f---G~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKF---GTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTT---SCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4789999999999999999999999 99999998864 7999999999999999999886 456799999999999
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
.....
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 88766
No 39
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=122.45 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=70.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+++|||+|||+.+++++|+++|+++ |.|.+++|..++. +||||||+|++.++|++|++.++ +..++|+.|+|.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~ 90 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKY---GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-GMELDGRRIRVS 90 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTT---SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT-TEEETTEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEE
Confidence 3689999999999999999999999 9999999998865 88999999999999999999987 478999999999
Q ss_pred cCCC
Q 022209 79 DAQR 82 (301)
Q Consensus 79 ~a~~ 82 (301)
.+..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8653
No 40
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=8.5e-17 Score=121.80 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=67.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+++++|+++|+++ |.|.+++|+.++. +||||||+|++.++|++|+++. +..++|+.|+|+
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~--~~~~~g~~i~v~ 85 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKF---GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK--EHRLDGRVIDPK 85 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS--CEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC--CCEECCEEEEEE
Confidence 4689999999999999999999999 9999999998864 8999999999999999999763 357999999998
Q ss_pred cC
Q 022209 79 DA 80 (301)
Q Consensus 79 ~a 80 (301)
.|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 41
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=124.61 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=73.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
+.+|||+|||+.+|+++|+++|++| |+|.+++|..+.. +||||||+|++.++|+.|++.+++ ..++|+.|+|+.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~~a 90 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFSPF---GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG-RIVATKPLYVALA 90 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTTTT---SCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTT-CBSSSSBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEEEEe
Confidence 4689999999999999999999999 9999999998832 899999999999999999999974 6789999999998
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87754
No 42
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=125.03 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=73.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhc-CCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCcc-ccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEG-HTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLS-YGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~-~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~-~~gr~LkV 77 (301)
+.+|||+|||+.+|+++|+++|++ + |.|.+++|..+++ +||||||+|++.++|+.|++.+++ .. ++|+.|+|
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~---G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~~g~~l~v 84 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVY---PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG-AVGLGSKPVRL 84 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHC---TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTT-CCSSSSSCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC---CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccC-CcccCCEeEEE
Confidence 468999999999999999999999 9 9999999999876 899999999999999999999975 45 99999999
Q ss_pred ecCCCCCC
Q 022209 78 SDAQRRTP 85 (301)
Q Consensus 78 ~~a~~di~ 85 (301)
+.+.....
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99876654
No 43
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=1.8e-16 Score=128.06 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=74.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+.+|||+|||+.++++||+++|+++ |+|.+++|..+++ +||||||+|++.++|+.|++.+++ ..++|+.|+|+.
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~ 110 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG-VPLDGRPMDIQL 110 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTT---SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTT-EESSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCC-CEECCcEEEEEE
Confidence 3589999999999999999999999 9999999998876 899999999999999999999874 689999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
|.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 988876
No 44
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.8e-17 Score=124.86 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=73.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.+|+++|+++|+++ |.|.+++|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|.
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 87 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKY---GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG-KSVDGRQIRVD 87 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHH---SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT-CCTTSCCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 4689999999999999999999999 9999999999865 899999999999999999999974 57899999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+....-
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9877654
No 45
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=124.91 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=72.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+++|||+|||+.++++||+++|++| |.|.+++|..+++ +||||||+|++.++|+.|++.+++ ..++|+.|+|..
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~ 90 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMA---GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG-QLLFDRPMHVKM 90 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC-CEeCCCEEEEEE
Confidence 5789999999999999999999999 9999999999877 889999999999999999999874 678999999998
Q ss_pred CCCCC
Q 022209 80 AQRRT 84 (301)
Q Consensus 80 a~~di 84 (301)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 76543
No 46
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.8e-17 Score=128.24 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=72.8
Q ss_pred CceEEEeCCCccccHHHHH---HHHhcCCCCceEEEEEeecCCC------CCCeEEEEeCCHHHHHHHHHHhCCCccccc
Q 022209 2 AKKISLYGFASHVSARAVK---EFLEGHTGEGTVSDVEVGQNKG------SRAHAIVEFTTVKAAELIKCLASVRLSYGN 72 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk---~~Fe~~~g~G~V~~~~V~~dr~------SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~g 72 (301)
..+|||+|||+.++++||+ ++|++| |+|.+++|..++. +||||||+|++.++|++||+.+|+ ..++|
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~---G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng-~~~~g 90 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKF---GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN-VVVDG 90 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTT---SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT-EEETT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhcc---CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC-CEECC
Confidence 5689999999999999999 999999 9999999998863 679999999999999999999974 68999
Q ss_pred eeEEEecCCCCCC
Q 022209 73 SYLKASDAQRRTP 85 (301)
Q Consensus 73 r~LkV~~a~~di~ 85 (301)
+.|+|+.|.....
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999877653
No 47
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=122.77 Aligned_cols=76 Identities=11% Similarity=0.197 Sum_probs=70.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.++|||+|||+.++++||+++|+++ |.|.+++|..+++ +||||||+|++.++|++|++.+++ ..++|+.|+|+.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~~ 91 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQA---GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG-IRLYGRPINVSG 91 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT-CEETTEECEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC-CEECCCEEEEEE
Confidence 4689999999999999999999999 9999999999876 889999999999999999999874 679999999987
Q ss_pred CC
Q 022209 80 AQ 81 (301)
Q Consensus 80 a~ 81 (301)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 48
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=1.2e-16 Score=121.85 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=72.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
+.+|||+|||+.++++||+++|+++ |.|..++|..+.. +||||||+|++.++|+.|++.+++ ..++|+.|+|+.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~a 83 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNEC---GHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG-MKLSGREIDVRID 83 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTT---SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTT-CCBTTBCCCCEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEEc
Confidence 4689999999999999999999999 9999999998644 899999999999999999999874 6799999999988
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
..+..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 77643
No 49
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.3e-17 Score=125.73 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=72.9
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEE-EEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCcccccee--
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVS-DVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSY-- 74 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~-~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~-- 74 (301)
++++|||+|||+.++++||+++|+++ |.|. +++|..|+. +||||||+|++.++|++|++.+++ ..++|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~~~ 83 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATM---GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING-KPLPGATPA 83 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHT---TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT-SEESSCSSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHh---CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC-CccCCCCcc
Confidence 46899999999999999999999999 9999 999999874 889999999999999999999874 6889999
Q ss_pred --EEEecCCCCC
Q 022209 75 --LKASDAQRRT 84 (301)
Q Consensus 75 --LkV~~a~~di 84 (301)
|+|+.|...-
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999876653
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=2.3e-16 Score=125.45 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=73.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.++++||+++|+++ |.|.+|+|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 90 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPF---GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG-QWLGGRQIRTN 90 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT-CEETTEECEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEE
Confidence 4689999999999999999999999 9999999998864 899999999999999999999974 67999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.....
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9887764
No 51
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=125.12 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=72.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCce-EEEEEee-cCCC---CCCeEEEEeCCHHHHHHHHHHhC-CCccccceeE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGT-VSDVEVG-QNKG---SRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYL 75 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~-V~~~~V~-~dr~---SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~L 75 (301)
..+|||||||+.+|+++|+++|+++ |. |.+++|. .++. +||||||+|.+.++|+.|++.++ ++..++|+.|
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKV---TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH---STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHh---cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 3589999999999999999999999 98 9999998 6664 89999999999999999999995 3478999999
Q ss_pred EEecCCCCCC
Q 022209 76 KASDAQRRTP 85 (301)
Q Consensus 76 kV~~a~~di~ 85 (301)
+|..|..+..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999877654
No 52
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=1.4e-16 Score=125.73 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=72.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+.+|+++|+++|+++ |.|.+++|..++. +||||||+|.+.++|+.|+..+++ ..++|+.|+|.
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~ 101 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDY---GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG-AEIMGQTIQVD 101 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCcEEEEE
Confidence 4689999999999999999999999 9999999998864 899999999999999999999874 68899999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.+....
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 876654
No 53
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-17 Score=120.64 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=68.5
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.||||+|||++++++||+++|+++ |.|.+++|..++. +||||||+|.+.++|++|++.++ ..++|+.|+|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF---GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT---SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT--CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC--CccCCEEEEEEe
Confidence 479999999999999999999999 9999999998864 89999999999999999999986 789999999987
Q ss_pred C
Q 022209 80 A 80 (301)
Q Consensus 80 a 80 (301)
|
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 5
No 54
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=125.37 Aligned_cols=79 Identities=10% Similarity=0.105 Sum_probs=72.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+.+++++|+++|++| |.|.+++|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|.
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 98 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEY---GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG-QDLMGQPISVD 98 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT-CBSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcc---CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC-CEECCcEEEEE
Confidence 3579999999999999999999999 9999999998865 789999999999999999999874 68999999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.|....
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 876553
No 55
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=6e-17 Score=119.45 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=66.3
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
+|||+|||++++++||+++|+++ |+|.+++|..++. +||||||+|++.++|++|++ ++ +..++|+.|+|+.|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~-~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF---GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH-FHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT---SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS-CCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC-CCEECCEEEEEEeC
Confidence 69999999999999999999999 9999999998874 89999999999999999998 54 56899999999864
No 56
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=127.63 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=72.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
.++|||||||+.+|+++|+++|+++ |.|.+++|..++. +||||||+|++.++|++|++.+++ ..++|+.|+|+.+
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~a 104 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQF---GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG-TVVEGRKIEVNNA 104 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGT---CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhc---CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEEC
Confidence 4689999999999999999999999 9999999998876 999999999999999999999874 6799999999988
Q ss_pred CCCC
Q 022209 81 QRRT 84 (301)
Q Consensus 81 ~~di 84 (301)
....
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 7653
No 57
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=124.37 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=69.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEE--------EEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccc
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSD--------VEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSY 70 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~--------~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~ 70 (301)
..+|||||||+.+|++||+++|+++ |.|.. ++|..++. +||||||+|++.++|+.|++.+++ ..+
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g-~~~ 88 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQI---GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG-KEF 88 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTT---SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT-CBS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC-CEe
Confidence 4689999999999999999999999 99999 99999865 889999999999999999999874 589
Q ss_pred cceeEEEecCC
Q 022209 71 GNSYLKASDAQ 81 (301)
Q Consensus 71 ~gr~LkV~~a~ 81 (301)
+|+.|+|+.|.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999998763
No 58
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=8e-17 Score=121.11 Aligned_cols=73 Identities=8% Similarity=0.091 Sum_probs=65.2
Q ss_pred CceEEEeCCCccc------cHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccce-
Q 022209 2 AKKISLYGFASHV------SARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNS- 73 (301)
Q Consensus 2 ~~tI~Vgnlp~~v------ta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr- 73 (301)
+++|||||||+.+ |+++|+++|+++ |.|.+++|..+.. +||||||+|++.++|+.|++.+|+ ..++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~---G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng-~~~~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF---GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG-YKLDKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT---CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSS-CCCSSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc---CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcC-cccCCce
Confidence 4789999999999 789999999999 9999999984333 999999999999999999999974 678999
Q ss_pred eEEEe
Q 022209 74 YLKAS 78 (301)
Q Consensus 74 ~LkV~ 78 (301)
.|+|+
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 89875
No 59
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=128.43 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=69.7
Q ss_pred CceEEEeCCCc-cccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-CCccccceeEEEec
Q 022209 2 AKKISLYGFAS-HVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~LkV~~ 79 (301)
+++|||+|||+ .+|++||+++|++| |+|.+|+|+.+ ||||||+|++.++|+.||+.++ ....++|+.|+|+.
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~f---G~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPF---GVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGG---SCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhc---CCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 57899999999 99999999999999 99999999875 5999999999999999999987 45679999999999
Q ss_pred CCCC
Q 022209 80 AQRR 83 (301)
Q Consensus 80 a~~d 83 (301)
|...
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8754
No 60
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.67 E-value=2.6e-16 Score=125.18 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
++++|||+|||+.+|++||+++|+.| |.|.+++|..+..+||||||+|.+.++|+.|++.+++ ..++|+.|+|..+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKY---GPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSG-FNVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTT-CBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEEe
Confidence 46799999999999999999999999 9999999998877999999999999999999999874 6889999999987
Q ss_pred CCC
Q 022209 81 QRR 83 (301)
Q Consensus 81 ~~d 83 (301)
..+
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 654
No 61
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=1.7e-16 Score=124.28 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=72.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccc--cceeEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSY--GNSYLK 76 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~--~gr~Lk 76 (301)
..+|||+|||+.+|++||+++|+++ |.|..|+|..|+. +||||||+|++.++|+.|++.+++...+ +|+.|+
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEF---GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHH---SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3689999999999999999999999 9999999999875 9999999999999999999999853223 789999
Q ss_pred EecCCCCCC
Q 022209 77 ASDAQRRTP 85 (301)
Q Consensus 77 V~~a~~di~ 85 (301)
|+.+....-
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999877653
No 62
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=3e-16 Score=125.15 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=71.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+++|||||||+.+|+++|+++|++| |.|.+|+|..++. +||||||+|++.++|+.|++.++ ..++|+.|+|.
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~--~~l~g~~l~V~ 99 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQF---GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDSKTIDPK 99 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC--EEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcc---CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC--CcCCCEEEEEE
Confidence 4689999999999999999999999 9999999999864 89999999999999999999874 78999999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.+....
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 887654
No 63
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.6e-16 Score=125.67 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=69.7
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
|+--||||||++.+|+++|+++|++| |+|.++++.. |||||||+|.++++|+.||+.+| +..++||.|+|+.|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~---G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln-~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH---GPLVSFHPYL---NQGIALCKYTTREEANKAQMALN-NCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH---SCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHT-TEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh---CCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhc-CCEECCcEEEEEEC
Confidence 56779999999999999999999999 9999999976 78999999999999999999997 47999999999988
Q ss_pred CC
Q 022209 81 QR 82 (301)
Q Consensus 81 ~~ 82 (301)
.+
T Consensus 79 ~e 80 (89)
T 2wbr_A 79 SE 80 (89)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 64
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=125.30 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=72.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEE--------EEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccc
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVS--------DVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSY 70 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~--------~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~ 70 (301)
+.+|||+|||+.+|+++|+++|+++ |.|. .|+|..++. +||||||+|.+.++|++||+.+++ ..+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~ 90 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQC---GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG-KDF 90 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTT---SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT-CEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc---CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC-Ccc
Confidence 4689999999999999999999999 9999 699999864 899999999999999999999874 679
Q ss_pred cceeEEEecCCCCCC
Q 022209 71 GNSYLKASDAQRRTP 85 (301)
Q Consensus 71 ~gr~LkV~~a~~di~ 85 (301)
+|+.|+|..+....-
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999887653
No 65
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.1e-17 Score=121.75 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=67.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+++|||+|||+.++++||+++|+++ |.|.+++|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~~~~~ 80 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPY---GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA-SGVQAQMAKQS 80 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTT---SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH-HTCCEESCCSS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC-CeEeeEEEeec
Confidence 5789999999999999999999999 9999999999864 899999999999999999999873 57889988876
Q ss_pred c
Q 022209 79 D 79 (301)
Q Consensus 79 ~ 79 (301)
.
T Consensus 81 ~ 81 (85)
T 1x4e_A 81 G 81 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 66
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=132.35 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=71.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-CCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~LkV~~a 80 (301)
+++|||+|||+.+|++||+++|++| |.|.+++|+.+ ||||||+|++.++|++|++.++ ++..++|+.|+|+.|
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~f---G~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPF---GKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTT---SCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 5789999999999999999999999 99999999976 6999999999999999999887 357899999999998
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
....+
T Consensus 105 ~~k~~ 109 (119)
T 2ad9_A 105 NHKEL 109 (119)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 87765
No 67
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=124.07 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=71.0
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
.+|||+|||+.+|++||+++|+++ |.|.+++|..+ +||||||+|++.++|++|++.+++ ..++|+.|+|+.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY---GPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDG-KVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH---CCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHH-SCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCC-CeECCcEEEEEEccC
Confidence 489999999999999999999999 99999999988 899999999999999999998874 578999999999877
Q ss_pred CCC
Q 022209 83 RTP 85 (301)
Q Consensus 83 di~ 85 (301)
..-
T Consensus 75 ~~~ 77 (101)
T 2hvz_A 75 MPR 77 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 68
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=125.56 Aligned_cols=78 Identities=8% Similarity=0.068 Sum_probs=69.7
Q ss_pred CCceEEEeCCCccc------cHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccce
Q 022209 1 MAKKISLYGFASHV------SARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNS 73 (301)
Q Consensus 1 M~~tI~Vgnlp~~v------ta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr 73 (301)
|+.+|||||||+.+ |+++|+++|+++ |.|.+|+|..+.. +||||||+|++.++|+.||..+++ ..++|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~---G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g-~~~~g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF---GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG-YKLDKQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG---SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSS-EECSTT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC---CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCC-cccCCC
Confidence 46799999999999 889999999999 9999999983333 999999999999999999999974 688998
Q ss_pred -eEEEecCCC
Q 022209 74 -YLKASDAQR 82 (301)
Q Consensus 74 -~LkV~~a~~ 82 (301)
.|+|+.|.+
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 999998753
No 69
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=127.19 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=73.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.++|||+|||+++|++||+++|+++ |.|.+|+|..+++ +||||||+|++.++|++|++.+++ ..++|+.|+|..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g-~~~~g~~l~V~~ 82 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKH---GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG-KSLHGKAIKVEQ 82 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTS---SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSS-CBCSSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEEE
Confidence 4689999999999999999999999 9999999999876 999999999999999999999974 679999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
+.....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 877654
No 70
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=125.69 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=69.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-CCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~LkV~~a 80 (301)
+++|||+|||+.+|++||+++|++| |+|.+++++. +||||||+|++.++|++|++.++ ..+.++|+.|+|+.+
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~f---G~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEF---GPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhcc---CCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 5789999999999999999999999 9999999985 57999999999999999999987 345789999999988
Q ss_pred CCCC
Q 022209 81 QRRT 84 (301)
Q Consensus 81 ~~di 84 (301)
...-
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 7653
No 71
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=135.22 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=70.9
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCc--eEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEG--TVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G--~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
.+|||||||+.+|++||+++|+.| | .|.+++|+.|+. +||||||+|++.++|++||+.++ +..++|+.|+|
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~---G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln-g~~~~Gr~l~V 131 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSI---GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP-GKVLNGEKVDV 131 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHT---TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST-TCEETTEECEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHH---CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-CCEECCeEeEE
Confidence 589999999999999999999999 9 999999999975 89999999999999999999997 46899999999
Q ss_pred ecCCC
Q 022209 78 SDAQR 82 (301)
Q Consensus 78 ~~a~~ 82 (301)
+.|..
T Consensus 132 ~~a~~ 136 (156)
T 3n9u_C 132 RPATR 136 (156)
T ss_dssp EECCH
T ss_pred EEcCC
Confidence 98754
No 72
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=124.67 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=70.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEE-EEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSD-VEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~-~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+|++||+++|+++ |.|.. ++|..+.+ +||||||+|+++++|++||+. + +..++||.|+|.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~---G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~-~~~~~gr~i~v~ 89 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGL---EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-H-KERIGHRYIEIF 89 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTC---CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-T-TCCSSSSCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C-cchhCCcEEEEE
Confidence 3589999999999999999999999 99987 99988855 899999999999999999998 5 578999999998
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+...-.
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 8765543
No 73
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=124.84 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=72.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.++++||+++|+++ |.|..|+|..++. +||||||+|++.++|++|++. + +..++|+.|+|.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~-~~~~~g~~l~V~ 90 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQY---GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R-PHTLDGRNIDPK 90 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTT---SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C-SEEETTEEEBCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C-CCeECCEEEEEE
Confidence 3689999999999999999999999 9999999999864 889999999999999999999 5 579999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.....
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9876653
No 74
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=124.46 Aligned_cols=79 Identities=9% Similarity=0.150 Sum_probs=72.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.+++++|+++|+++ |.|.+++|..++. +||||||+|.+.++|+.|++.++ +..++|+.|+|.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 83 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEV---GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN-GREFSGRALRVD 83 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTT---SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS-SBSCSSSCBEEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhc---CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-CCeeCCcEEEEE
Confidence 3689999999999999999999999 9999999998864 89999999999999999999987 468899999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.+....
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 887654
No 75
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=128.18 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=71.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceE-EEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTV-SDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V-~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+|++||+++|+.+ |.| .+|+|+.|++ +||||||+|++.++|++||++ + +..++|+.|+|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~-~~~~~gr~i~v~ 89 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGI---PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-H-RKKLNGREAFVH 89 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTS---CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-C-SEEETTEEEEEE
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhC---CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C-CCccCCeEEEEE
Confidence 4689999999999999999999999 999 8999999887 999999999999999999988 4 589999999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.+....
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 887654
No 76
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=125.48 Aligned_cols=78 Identities=9% Similarity=0.196 Sum_probs=71.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+.+|+++|+++|+++ |.|.+++|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|+
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g-~~i~g~~l~V~ 101 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPF---GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPMKVG 101 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTT---SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT-CCSSSSCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 3589999999999999999999999 9999999998864 899999999999999999999874 68999999999
Q ss_pred cCCCC
Q 022209 79 DAQRR 83 (301)
Q Consensus 79 ~a~~d 83 (301)
.+...
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 87653
No 77
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=2.4e-16 Score=125.88 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=69.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||++++++||+++|++| |.|.+++|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|+
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~ 115 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPF---GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG-FQVGTKRLKVQ 115 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTS---CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC-CEETTEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 3689999999999999999999999 9999999998864 899999999999999999999974 68999999998
Q ss_pred cCC
Q 022209 79 DAQ 81 (301)
Q Consensus 79 ~a~ 81 (301)
.++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 753
No 78
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=3.6e-16 Score=126.22 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=73.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+.+|+++|+++|++| |.|..|+|+.++. ++|||||+|++.++|+.|++.+++ ..++|+.|+|.
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 97 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEY---GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG-QDLMGQPISVD 97 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTT-CBSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CeeCCeEEEEE
Confidence 3589999999999999999999999 9999999998864 899999999999999999999874 67899999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.|.....
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9876654
No 79
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=4.1e-16 Score=121.99 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=70.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.++++||+++|+++ | |.+|+|+.++. +||||||+|++.++|+.|+ .++ +..++|+.|+|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l~V~ 88 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDL---S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD-GALLGDRSLRVD 88 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTS---C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT-TCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhC---C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC-CCeECCeEEEEE
Confidence 3589999999999999999999999 7 99999999875 8999999999999999999 776 478999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9877654
No 80
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.1e-17 Score=127.32 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=69.7
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+..+|||+|||+++|++||+++|+++ |.| +|+|+.|++ +||||||+|+++++|++||+ ++ +..++||.|+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~---G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~-~~~~~gr~i~V~ 87 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPL---NPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KD-KANMQHRYVELF 87 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSC---CCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TS-SCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc---Cce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hC-CCeECCcEEEEE
Confidence 35689999999999999999999998 855 999998877 89999999999999999995 44 578999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+....-
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 8766543
No 81
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=122.62 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=69.2
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
++.+|||+|||+.+|+++|+++|++| |.|. +++++++ +||||||+|++.++|+.|++.+++ ..++|+.|+|..+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~---G~v~-~~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~~a 91 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALREL---GSVP-LRLTWQG-PRRRAFLHYPDSAAAQQAVSCLQG-LRLGTDTLRVALA 91 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHT---TCCC-SEEEEET-TTTEEEEECSSHHHHHHHHHHHTT-CCSSSSCCEEEEC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhc---CCEE-EEEEcCC-CCcEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEEc
Confidence 46799999999999999999999999 9996 7777764 899999999999999999999974 6889999999987
Q ss_pred CCC
Q 022209 81 QRR 83 (301)
Q Consensus 81 ~~d 83 (301)
..+
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 82
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=124.93 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=70.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.++++||+++|++| |.|..|+|..|+. +||||||+|++.++|++|+ .++ +..++|+.|+|.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l~V~ 99 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAV---GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT-GQRLLGVPIIVQ 99 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT-TEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC-CCEeCCeEEEEE
Confidence 3689999999999999999999999 9999999998875 8999999999999999999 776 478999999999
Q ss_pred cCCCC
Q 022209 79 DAQRR 83 (301)
Q Consensus 79 ~a~~d 83 (301)
.+...
T Consensus 100 ~a~~~ 104 (114)
T 2cq4_A 100 ASQAE 104 (114)
T ss_dssp EHHHH
T ss_pred ecCCC
Confidence 87654
No 83
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.65 E-value=4.6e-16 Score=129.96 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=72.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||||||+.+|++||+++|++| |.|.+++|..|+. +||||||+|++.++|+.|++.+++ ..++|+.|+|.
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~---G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 145 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKY---GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG-AVLDGRELRVQ 145 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHH---SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT-EESSSSEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 3589999999999999999999999 9999999999864 999999999999999999999874 67999999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.+....
T Consensus 146 ~a~~~~ 151 (158)
T 2kn4_A 146 MARYGR 151 (158)
T ss_dssp EECCSS
T ss_pred ECCCCC
Confidence 988764
No 84
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=3.8e-16 Score=122.51 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=70.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+.+|||+|||+.+|+++|+++|+++ |.|.+++|..+++ +||||||+|++.++|++|++.+++ ..++|+.|+|+.
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~~ 104 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG-VPLDGRPMNIQL 104 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEEEE
Confidence 4689999999999999999999999 9999999998876 889999999999999999999874 688999999987
Q ss_pred CC
Q 022209 80 AQ 81 (301)
Q Consensus 80 a~ 81 (301)
|.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 85
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=121.66 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=70.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC----CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~----SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
..+|||+|||+.+|++||+++|+++ | |.+|+|+.++. +||||||+|++.++|++|+ .++ +..++|+.|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l~V 88 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGL---N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-EESLGNKRIRV 88 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTS---C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG-TCEETTEECEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHC---C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC-CCEeCCcEEEE
Confidence 3689999999999999999999999 9 99999998863 7999999999999999999 776 46899999999
Q ss_pred ecCCCCCC
Q 022209 78 SDAQRRTP 85 (301)
Q Consensus 78 ~~a~~di~ 85 (301)
..+....-
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99877653
No 86
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.3e-16 Score=123.79 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=71.8
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
++|||+|||+.+|+++|+++|++| |.|..|+|+.++. +||||||+|.+.++|+.||+. + +..++|+.|+|..
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~-~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQW---GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R-PHSIDGRVVEPKR 102 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSS---CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C-SEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C-CcEECCEEEEEEE
Confidence 689999999999999999999999 9999999999865 899999999999999999998 4 5789999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
+....-
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 876643
No 87
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=123.27 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=68.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCC--C--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--G--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr--~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
.++|||||||++++++||+++|+++ | |.+++|..++ + +||||||+|++.++|++|+ .++ +..++|+.|+|
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~---G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~-g~~~~g~~l~V 92 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGL---N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-EESLGNRRIRV 92 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSS---C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT-TCCBTTBCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC-CCEECCeEEEE
Confidence 5789999999999999999999999 9 9999999887 2 8999999999999999999 776 46899999999
Q ss_pred ecCCCC
Q 022209 78 SDAQRR 83 (301)
Q Consensus 78 ~~a~~d 83 (301)
..+...
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 987653
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=5.3e-16 Score=127.91 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=72.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+++|||+|||+.+|++||+++|++| |.|..|+|..|+. +||||||+|++.++|++||+.+++ ..++|+.|+|.
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng-~~i~g~~l~V~ 121 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKY---GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG-MELDGRRIRVD 121 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTT---SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT-CCSSSSCCEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEE
Confidence 4689999999999999999999999 9999999998865 899999999999999999999974 68999999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.+..+.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 877653
No 89
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=4.3e-16 Score=125.43 Aligned_cols=78 Identities=10% Similarity=0.195 Sum_probs=71.0
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||+|||+.+|++||+++|++| |.|.+|+|..++. +||||||+|++.++|+.|+ .++ +..++|+.|+|..
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSC---GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMD-ETVFRGRTIKVLP 111 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTT---SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTT-TCEETTEECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcC-CCeECCeEEEEEE
Confidence 689999999999999999999999 9999999998854 8999999999999999999 665 4689999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
+..+..
T Consensus 112 a~~~~~ 117 (124)
T 2jwn_A 112 KRTNMP 117 (124)
T ss_dssp SSCCCS
T ss_pred CCCCCC
Confidence 886653
No 90
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-16 Score=129.56 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=69.4
Q ss_pred CceEEEeCCCcc-ccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-CCccccceeEEEec
Q 022209 2 AKKISLYGFASH-VSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~-vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~LkV~~ 79 (301)
+++|||+|||++ +|++||+++|++| |+|.+|+|.. +||||||+|++.++|+.|++.++ +...++||.|+|+.
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~f---G~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPY---GKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTT---SCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhc---CCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 578999999998 9999999999999 9999999974 68999999999999999999886 56789999999998
Q ss_pred CCCC
Q 022209 80 AQRR 83 (301)
Q Consensus 80 a~~d 83 (301)
|...
T Consensus 99 a~~~ 102 (112)
T 1x4f_A 99 SEKY 102 (112)
T ss_dssp ECSC
T ss_pred Cccc
Confidence 8654
No 91
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=9.6e-17 Score=118.11 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=66.0
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
||||+|||+.+|+++|+++|+++ |.|.++++..++. +||||||+|+++++|++|+++ + +..++|+.|+|+.|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~-~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF---GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-K-YHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH---SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-S-SCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-C-CCeECCEEEEEEEC
Confidence 69999999999999999999999 9999999998865 899999999999999999996 3 46799999998764
No 92
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=1.3e-16 Score=122.40 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=68.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+|++||+++|+++ |.|..+.++.++. +||||||+|++.++|++|++.+++ ..++|+.|+|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~gr~l~v~ 90 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGY---QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND-RPIGSRKVKLS 90 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTS---CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC-CeECCcEEEEE
Confidence 3689999999999999999999999 9999888887765 889999999999999999999874 68999999998
Q ss_pred cCC
Q 022209 79 DAQ 81 (301)
Q Consensus 79 ~a~ 81 (301)
.+.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 753
No 93
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=6.2e-17 Score=123.30 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=68.6
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
++|||||||++++++||+++|+++ |.|.+++|..++. +||||||+|++.+ |+.|+..+++ ..++|+.|+|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g-~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF---GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDN-TDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH---TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCS-SCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc---CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCC-CEECCeEEEEEE
Confidence 689999999999999999999999 9999999998864 8999999999999 9999999974 678999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
|.....
T Consensus 77 a~~~~~ 82 (90)
T 2ki2_A 77 ANPKKS 82 (90)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 887654
No 94
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=118.88 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=68.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.++|||+|||+.+|++||+++|+++ |.| +|..+.+ +||||||+|++.++|++|++.++ +..++|+.|+|..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKA---TFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCN-KREIEGRAIRLEL 87 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSC---SEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTS-SEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhC-CCEeCCeEEEEEE
Confidence 5689999999999999999999998 888 5666644 89999999999999999999987 4789999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
+.....
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 877654
No 95
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=125.71 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=68.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.+|+++|+++|+++ |.|.+++|..++. +||||||+|++.++|++|++.++ +..++|+.|+|+
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 138 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-ESELFGRTIRVN 138 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGG---SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST-EEEETTEEEEEE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhc---CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEE
Confidence 4689999999999999999999999 9999999998864 89999999999999999999987 468999999998
Q ss_pred cC
Q 022209 79 DA 80 (301)
Q Consensus 79 ~a 80 (301)
.|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 64
No 96
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=126.22 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=73.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+++|++||+++|+.+ |.|.+|+|..++. +||||||+|++.++|++|++.++ +..++|+.|+|.
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 117 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERY---GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN-GFNILNKRLKVA 117 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHH---SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT-TEECSSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEE
Confidence 4689999999999999999999999 9999999998875 89999999999999999999987 468999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+....-
T Consensus 118 ~a~~~~~ 124 (139)
T 1u6f_A 118 LAASGHQ 124 (139)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9887754
No 97
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=116.25 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=69.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
.++|||+|||+++|+++|+++|+++ |.|.+++|. ||||||+|++.++|+.|++.+++ ..++|+.|+|..+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQY---GKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHH-YKLHGVNINVEASK 78 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTS---SCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTT-CBCSSCBCEEECSS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcC-CccCCcEEEEEECC
Confidence 4689999999999999999999999 999999998 79999999999999999999874 68999999999987
Q ss_pred CCCC
Q 022209 82 RRTP 85 (301)
Q Consensus 82 ~di~ 85 (301)
...-
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 98
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.8e-16 Score=115.78 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=67.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
.++|||+|||+.+++++|+++|+++ |.|.++++..+ ||||||+|++.++|+.|++.+.++..++|+.|+|+.|+
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~---G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQF---GEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTT---SCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhC---CCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4689999999999999999999999 99999999974 79999999999999999998844578999999998763
No 99
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=119.74 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=70.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccc-----eeEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGN-----SYLK 76 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~g-----r~Lk 76 (301)
..+|||+|||+.+|++||+++|+++ |.|..|+|..+ |||||+|++.++|++||+.+|+ ..++| +.|+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREA---GDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDN-TKFRSHEGETAYIR 86 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGG---SCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSS-EEEECTTSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCc-CCccCCcCcceEEE
Confidence 4689999999999999999999999 99999999987 9999999999999999999974 67888 9999
Q ss_pred EecCCCCCC
Q 022209 77 ASDAQRRTP 85 (301)
Q Consensus 77 V~~a~~di~ 85 (301)
|..|....-
T Consensus 87 V~~a~~~~~ 95 (108)
T 1x4c_A 87 VKVDGPRSP 95 (108)
T ss_dssp EEESSCCSC
T ss_pred EEeCCCCCC
Confidence 999887653
No 100
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=117.97 Aligned_cols=76 Identities=13% Similarity=0.246 Sum_probs=69.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCcccc--ceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYG--NSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~--gr~LkV~~ 79 (301)
+++|||+|||+.+|++||+++|++| |.|.++++..+ ||||||+|++.++|+.|++.+++ ..++ |+.|+|+.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g-~~~~~~g~~l~V~~ 89 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRF---GSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRG-FPLGGPDRRLRVDF 89 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTT---SCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTT-CBCSSSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCC-CEeCCCCcEEEEEE
Confidence 4789999999999999999999999 99999999876 79999999999999999999974 5677 99999998
Q ss_pred CCCCC
Q 022209 80 AQRRT 84 (301)
Q Consensus 80 a~~di 84 (301)
+..+.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77653
No 101
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=120.27 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=71.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
..+|||+|||+.+++++|+++|++| |.|..|+|..+ ||||||+|++.++|+.|+..+++ ..++|+.|+|..+.
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPF---GQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNG-TTIEGHVVKCYWGK 97 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHH---SCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTT-CEETTEECEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCC-CEECCcEEEEEecC
Confidence 4689999999999999999999999 99999999987 79999999999999999999974 68999999999988
Q ss_pred CCCC
Q 022209 82 RRTP 85 (301)
Q Consensus 82 ~di~ 85 (301)
.+..
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 102
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=118.81 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=70.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+++++|+++|+++ |+|..|+|..++. +||||||+|++.++|+.|++. +..++|+.|+|.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~g~~l~v~ 88 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTF---GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ---RHMIDGRWCDCK 88 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGG---SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS---CEEETTEEEEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhc---CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc---CCeeCCeEEEEE
Confidence 3689999999999999999999999 9999999999864 899999999999999999994 358999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 8877643
No 103
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=2e-16 Score=127.99 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=70.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCce---EEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGT---VSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLK 76 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~---V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~Lk 76 (301)
..+|||+|||+++|++||++||+.+ |. |.+|+|+.++. +||||||+|++.++|++||+ ++ +..++||.|+
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~---G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-g~~~~gr~i~ 91 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDC---TIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KD-RESMGHRYIE 91 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTS---CBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GT-TEEETTEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc---CCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC-CCeECCeEEE
Confidence 4689999999999999999999998 88 89999998876 89999999999999999999 65 5789999999
Q ss_pred EecCCCC
Q 022209 77 ASDAQRR 83 (301)
Q Consensus 77 V~~a~~d 83 (301)
|..+..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9887654
No 104
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=126.26 Aligned_cols=77 Identities=14% Similarity=0.224 Sum_probs=69.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCce---EEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGT---VSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLK 76 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~---V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~Lk 76 (301)
..+|||+|||+++|++||++||+.+ |. |.+++|..|+. +||||||+|++.++|++||+ ++ +..++||.|+
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~---g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-~~~~~gr~i~ 85 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDC---RIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KH-RMYMGQRYVE 85 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTS---CBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TT-TCCSSSSCCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc---CCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hC-cceeCCeEEE
Confidence 4589999999999999999999998 76 99999999876 99999999999999999999 65 4689999999
Q ss_pred EecCCCC
Q 022209 77 ASDAQRR 83 (301)
Q Consensus 77 V~~a~~d 83 (301)
|..+...
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9987653
No 105
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-16 Score=122.56 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=69.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.++++||+++|+++ |.|..+.++.++. +||||||+|++.++|++|++.+++ ..++|+.|+|.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~V~ 90 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGY---QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND-RPIGSRKVKLV 90 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTS---CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT-CEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHc---CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC-CeeCCeEEEEE
Confidence 3579999999999999999999999 9998888887754 899999999999999999999974 68999999999
Q ss_pred cCCCC
Q 022209 79 DAQRR 83 (301)
Q Consensus 79 ~a~~d 83 (301)
.+..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 87643
No 106
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.8e-16 Score=120.09 Aligned_cols=74 Identities=7% Similarity=0.147 Sum_probs=68.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+++|||||||+.+++++|+++|+++ |.|.++++. .+||||||+|++.++|+.|++.++ +..++|+.|+|+.|.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNF---GFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALA-NFPFQGRNLRTGWGK 99 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTT---SCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHT-TCEETTEECCCCBCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhC---CCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhC-CCeECCeEEEEEecc
Confidence 5689999999999999999999999 999999998 378999999999999999999987 468999999999876
Q ss_pred C
Q 022209 82 R 82 (301)
Q Consensus 82 ~ 82 (301)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 107
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=117.65 Aligned_cols=74 Identities=23% Similarity=0.279 Sum_probs=62.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
..+|||||||+++|+++|+++|++| |.|.+|+|+.+ |||||||+|+++++|+++ .+..+.++|+.|.|+.|.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~---G~i~~v~i~~~--srGfaFV~F~~~~~A~~~---~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQY---GEVVDVFIPKP--FRAFAFVTFADDKVAQSL---CGEDLIIKGISVHISNAE 82 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEECCSS--CCSEEEEEESCHHHHHHH---TTCEEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcc---CCEEEEEEeeC--CCCEEEEEECCHHHHHHH---cCCCcccCCEEEEEEEcC
Confidence 4689999999999999999999999 99999999975 899999999999999832 222356779999999876
Q ss_pred CC
Q 022209 82 RR 83 (301)
Q Consensus 82 ~d 83 (301)
..
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 43
No 108
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=1.8e-15 Score=118.30 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=67.8
Q ss_pred CCceEEEeCCCc-cccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 1 MAKKISLYGFAS-HVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 1 M~~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
++++|||||||+ .+++++|+++|++| |.|.+++| +||||||+|++.++|+.|++.+++ ..++|+.|+|..
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~---G~v~~v~i-----~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~ 91 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPY---GHIMQINI-----KNAFGFIQFDNPQSVRDAIEXESQ-EMNFGKKLILEV 91 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGG---SCEEEEEE-----CSSEEEEEESSHHHHHHHHHHHTT-SEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEe
Confidence 468999999999 99999999999999 99999998 489999999999999999999874 688999999998
Q ss_pred CCCC
Q 022209 80 AQRR 83 (301)
Q Consensus 80 a~~d 83 (301)
+...
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 109
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=6.1e-16 Score=119.09 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=70.8
Q ss_pred CceEEEeCCCccccHHHHH----HHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVK----EFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk----~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
+++|||+|||+.++++||+ ++|+++ |.|.+++|..+..+||||||+|.+.++|+.|++.+++ ..++|+.|+|
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~---G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 83 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRF---GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG-FPFYDKPMRI 83 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGG---SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT-CEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhC---CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC-CEECCcEEEE
Confidence 4689999999999999999 999999 9999999984333899999999999999999999974 6789999999
Q ss_pred ecCCCCC
Q 022209 78 SDAQRRT 84 (301)
Q Consensus 78 ~~a~~di 84 (301)
+.+..+.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9887654
No 110
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=123.45 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=67.2
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
.+|||+|||+++|++||++||+++ .|.+|+|+.|++ +||||||+|+++++|++|| .++ +..++||+|.|..+
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~----~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~-~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL----RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRN-RMLMIQRYVEVSPA 90 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS----CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTT-TEEETTEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC----CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcC-CCeECCeEEEEEEC
Confidence 479999999999999999999997 488999998876 9999999999999999999 454 57899999999887
Q ss_pred CCC
Q 022209 81 QRR 83 (301)
Q Consensus 81 ~~d 83 (301)
...
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 653
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=2.7e-16 Score=131.91 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=69.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCce---EEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGT---VSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLK 76 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~---V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~Lk 76 (301)
+.+|||+|||+++|++||+++|+++ |. |.+|+|+.|+. +||||||+|++.++|++||+ ++ +..++||+|+
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~---G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~-g~~l~gr~i~ 118 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDC---TIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KD-RESMGHRYIE 118 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTC---CCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TT-EEESSSSEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC-CCEECCEEEE
Confidence 3589999999999999999999999 98 89999999876 89999999999999999999 65 4789999999
Q ss_pred EecCCCC
Q 022209 77 ASDAQRR 83 (301)
Q Consensus 77 V~~a~~d 83 (301)
|..+...
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9987543
No 112
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.3e-16 Score=118.23 Aligned_cols=77 Identities=9% Similarity=0.084 Sum_probs=68.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCce-EEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGT-VSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~-V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
.++|||+|||+.+|++||+++|++| |. |..+.+. +||||||+|++.++|+.|++.+++...++|+.|+|+.+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDR---KLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHT---TCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc---CCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 3689999999999999999999999 88 6666664 78999999999999999999997537899999999998
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
..+..
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87654
No 113
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=126.47 Aligned_cols=79 Identities=11% Similarity=0.179 Sum_probs=70.1
Q ss_pred CceEEEeCCCccccHHHHH----HHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVK----EFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk----~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
+.+|||||||+.+++++|+ ++|++| |.|.+|.+..+..+||||||+|++.++|+.|++.+|+ ..+.|+.|+|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~---G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng-~~l~gr~l~V 104 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQ---GDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQG-YPFQGNPLVI 104 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHH---SCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTT-CCCTTSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccC---CCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCC-CEeCCCEEEE
Confidence 4689999999999999977 699999 9999998876545999999999999999999999974 6889999999
Q ss_pred ecCCCCC
Q 022209 78 SDAQRRT 84 (301)
Q Consensus 78 ~~a~~di 84 (301)
+.|..+.
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9887653
No 114
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=121.19 Aligned_cols=76 Identities=17% Similarity=0.059 Sum_probs=70.4
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
.+|||+|||+.+|++||+++|++| |.|.+|+|.. +||||||+|++.++|+.||..+|+ ..++|+.|+|..|..
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRF---GSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAY-SKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTT-CBSSSSBCEEEEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCC-CEECCeEEEEEECCC
Confidence 589999999999999999999999 9999999874 779999999999999999999974 679999999999988
Q ss_pred CCC
Q 022209 83 RTP 85 (301)
Q Consensus 83 di~ 85 (301)
+..
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 776
No 115
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.1e-15 Score=123.70 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=80.0
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
+||||+|||+++|++||+++|+++ |.|.+++|..++. +||||||+|.+.++|+.|++.++ +..++|+.|+|..+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVG---GPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN-GKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGG---SCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhc---CCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcC-CCccCCCeeEEEEc
Confidence 689999999999999999999999 9999999998886 89999999999999999998887 46889999999987
Q ss_pred CCCCCCCCCCCCCCCccCCCceEEecccc
Q 022209 81 QRRTPHYAKRGIPHYQLGDDLKLNFGCHI 109 (301)
Q Consensus 81 ~~di~~~pRp~~~~~r~~~~~~l~~G~~v 109 (301)
..... + ..- +..+|.++.+-
T Consensus 77 ~~~~~--~------~~~-~~~~l~v~nl~ 96 (166)
T 3md3_A 77 FQSQQ--S------SSD-DTFNLFVGDLN 96 (166)
T ss_dssp CCCCC--C------CCT-TCEEEEEESCC
T ss_pred CCCCC--C------CCC-CCceEEECCCC
Confidence 66543 1 112 44567777654
No 116
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=1.1e-15 Score=121.02 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=69.4
Q ss_pred CCceEEEeCCCcc-ccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 1 MAKKISLYGFASH-VSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 1 M~~tI~Vgnlp~~-vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
|+.+|||+|||+. +|++||+++|++| |.|..|+| +||||||+|++.++|+.|++.+++ ..++|+.|+|..
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~---G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~~ 96 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY---GRVAGCSV-----HKGYAFVQYSNERHARAAVLGENG-RVLAGQTLDINM 96 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG---SCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTT-CEETTEECCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC---CCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEE
Confidence 4579999999999 9999999999999 99999999 689999999999999999999874 689999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
+..+..
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 117
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=116.52 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=68.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
..+|||+|||+.+|++||+++|+++ .|.+++|+.+.+ +||||||+|++.++|+.|++ ++ +..++|+.|+|..
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~-g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL----KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CN-REYMGGRYIEVFR 83 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS----CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SC-SEEETTEEEEEEE
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC----CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hC-CceeCCcEEEEEE
Confidence 4689999999999999999999997 488999998854 89999999999999999999 76 5789999999998
Q ss_pred CCCC
Q 022209 80 AQRR 83 (301)
Q Consensus 80 a~~d 83 (301)
+...
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 7654
No 118
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.4e-15 Score=114.48 Aligned_cols=75 Identities=11% Similarity=0.134 Sum_probs=68.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+++|||+|||+.+|++||+++|++| |.|..++|. |+||||+|++.++|++|++.++ +..++|+.|+|+.+.
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEY---GPVIECDIV-----KDYAFVHMERAEDAVEAIRGLD-NTEFQGKRMHVQLST 80 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTT---SCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHT-TEEETTEEEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhC-CCeeCCcEEEEEEcc
Confidence 4689999999999999999999999 999999997 6799999999999999999987 468999999999987
Q ss_pred CCCC
Q 022209 82 RRTP 85 (301)
Q Consensus 82 ~di~ 85 (301)
....
T Consensus 81 ~~~~ 84 (92)
T 2dgt_A 81 SRLR 84 (92)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 119
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-16 Score=128.70 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=70.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEE--EEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCC---ccccce
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSD--VEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVR---LSYGNS 73 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~--~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~---l~~~gr 73 (301)
.++|||||||+.+|+++|+++|++| |.|.. |+|+.|+. +||||||+|++. +|+.|+..+++. +.++|+
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~---G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPY---AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGG---CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 4689999999999999999999999 99977 99999984 999999999999 999999999742 289999
Q ss_pred eEEEecCCCC
Q 022209 74 YLKASDAQRR 83 (301)
Q Consensus 74 ~LkV~~a~~d 83 (301)
.|+|..+...
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999987664
No 120
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=1.8e-15 Score=126.81 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=72.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+.+|++||+++|+++ |.|.+|+|..++. +||||||+|++.++|++||+.++ +..++|+.|+|.
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKS---GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN-GTRLDDRIIRTD 114 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-TSEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEE
Confidence 4689999999999999999999999 9999999999875 88999999999999999999987 468899999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.|....
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 987654
No 121
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=3.6e-16 Score=121.85 Aligned_cols=75 Identities=19% Similarity=0.311 Sum_probs=68.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+.+|||+|||+.+++++|+++|+++ |.|.+++|..+++ +||||||+|++.++|+.|++ + +..++|+.|.|..
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~-~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARY---GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--S-QINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--C-CCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--C-CCeECCEEEEEEE
Confidence 5789999999999999999999999 9999999999876 88999999999999999999 3 5789999999877
Q ss_pred CCC
Q 022209 80 AQR 82 (301)
Q Consensus 80 a~~ 82 (301)
+..
T Consensus 83 a~~ 85 (102)
T 2xs2_A 83 AIR 85 (102)
T ss_dssp EEE
T ss_pred CCc
Confidence 653
No 122
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=9.7e-16 Score=127.08 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=72.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+.+|++||+++|+++ |.|..++|..++. +||||||+|++.++|++|++.+++ ..++|+.|+|+
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g-~~i~g~~l~V~ 122 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKY---GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG-AVLDGRELRVQ 122 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGG---SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTT-CCSSSSCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 3589999999999999999999999 9999999998864 999999999999999999999874 57999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.....
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9877653
No 123
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=114.05 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=68.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+++|||+|||+.+|+++|+++|++| |.|..++|. ||||||+|++.++|+.|++.+++ ..++|+.|+|+.+.
T Consensus 9 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 9 TWKIFVGNVSAACTSQELRSLFERR---GRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNG-KEVKGKRINVELST 79 (90)
T ss_dssp SCCEEEESCCTTCCHHHHHHHHHHH---SCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTT-CEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcC---CCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEECC
Confidence 4689999999999999999999999 999999997 67999999999999999999974 68999999999987
Q ss_pred CCC
Q 022209 82 RRT 84 (301)
Q Consensus 82 ~di 84 (301)
...
T Consensus 80 ~~~ 82 (90)
T 2dnp_A 80 KGQ 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 124
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=3.6e-16 Score=121.67 Aligned_cols=77 Identities=13% Similarity=0.064 Sum_probs=68.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||||||+++|++||+++|+++ |.|.. .++.++. +||||||+|++.++|++|++ ++ +..++|+.|+|.
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~-g~~~~g~~l~V~ 90 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISEL---FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT-GLKVFGNEIKLE 90 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH---HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG-GCCBTTBCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC-CcEECCcEEEEE
Confidence 4689999999999999999999999 99988 6666644 99999999999999999998 76 467899999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.+....
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 887654
No 125
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.4e-15 Score=120.06 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=68.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+.+|||||||+.+|++||+++|++| |.|..++|. ||||||+|.+.++|+.|++.+++ ..++|+.|+|..+.
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPF---GPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHG-KSFANQPLEVVYSK 101 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTT---SCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTT-CEETTEECEEESCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEEec
Confidence 4689999999999999999999999 999999998 89999999999999999999974 67899999999987
Q ss_pred CCC
Q 022209 82 RRT 84 (301)
Q Consensus 82 ~di 84 (301)
.+.
T Consensus 102 ~~~ 104 (108)
T 2jvo_A 102 LPA 104 (108)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 126
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=1.7e-15 Score=115.70 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=68.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
..+|||+|||+.++++||+++|+++ .|..++|. .+||||||+|++.++|+.|++.++ +..++|+.|+|+.++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~----~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY----DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFH-QYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS----CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHT-TEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC----CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhC-CCeECCcEEEEEEcC
Confidence 5789999999999999999999997 57788874 489999999999999999999987 468999999999998
Q ss_pred CCCC
Q 022209 82 RRTP 85 (301)
Q Consensus 82 ~di~ 85 (301)
.+..
T Consensus 77 ~~~~ 80 (88)
T 1wg1_A 77 TDAL 80 (88)
T ss_dssp CCCC
T ss_pred CCce
Confidence 8865
No 127
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.1e-15 Score=113.48 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=68.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
.++|||+|||+.+|+++|+++|++| |.|.|.++++ +||||||+|.+.++|+.|++.+++ ..++|+.|+|..+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~-g~g~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNI-KPGAVERVKK-----IRDYAFVHFSNREDAVEAMKALNG-KVLDGSPIEVTLAK 87 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTT-STTCEEEEEE-----CSSEEEEEESSHHHHHHHHHHHSS-EEETTEEEEEECCC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEE-----eCCeEEEEeCCHHHHHHHHHHhCC-CEeCCcEEEEEECC
Confidence 3689999999999999999999998 4488999876 489999999999999999999874 68899999999987
Q ss_pred CCC
Q 022209 82 RRT 84 (301)
Q Consensus 82 ~di 84 (301)
...
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 664
No 128
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=117.09 Aligned_cols=76 Identities=12% Similarity=0.230 Sum_probs=69.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
.++|||+|||+.+|+++|+++|++| |.|.+++|..+ ||||||+|++.++|++|++.+++ ..++|+.|+|+.+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKY---GKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDN-MPLRGKQLRVRFAC 87 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTT---CCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTT-CCBTTBCCEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhc---CCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCC-CEeCCceEEEEEcC
Confidence 3589999999999999999999999 99999999854 79999999999999999999974 57899999999987
Q ss_pred CCC
Q 022209 82 RRT 84 (301)
Q Consensus 82 ~di 84 (301)
...
T Consensus 88 ~~~ 90 (99)
T 2cpj_A 88 HSA 90 (99)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 129
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.6e-15 Score=119.13 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=69.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceE----EEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTV----SDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V----~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
+.+|||+|||+.+|+++|+++|++| |.| ..+++.+. .+||||||+|++.++|+.|++.+++ ..++|+.|+|
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~v~~~~~~~~~~~g-~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~v 99 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARF---QEKKGPPIQFRMMTG-RMRGQAFITFPNKEIAWQALHLVNG-YKLYGKILVI 99 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHH---HHSSSSCCEEEEECS-SSCSEEEEECSSHHHHHHHHHHSTT-CBCSSCBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCccceEEEEEcCCC-ccceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEE
Confidence 3689999999999999999999999 998 56666632 2999999999999999999999974 6789999999
Q ss_pred ecCCCCCC
Q 022209 78 SDAQRRTP 85 (301)
Q Consensus 78 ~~a~~di~ 85 (301)
..+.....
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99887754
No 130
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.59 E-value=4.9e-16 Score=130.94 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=69.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
..+|||+|||+++|++||+++|+++ | |.+|+|+.|++ +||||||+|+++++|++|| .++ +..++||+|+|..
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~---G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~-g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPL---N-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKD-RANMQHRYIELFL 119 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSC---C-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCC-SCSSSSCCCCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---C-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhC-CCEECCEEEEEEE
Confidence 4689999999999999999999999 8 66999999877 9999999999999999999 554 5789999999988
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
+.....
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 776543
No 131
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=119.06 Aligned_cols=76 Identities=9% Similarity=0.103 Sum_probs=67.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccc--------c
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSY--------G 71 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~--------~ 71 (301)
..+|||+|||+.+|+++|+++|+++ |.|..++|..+++ +||||||+|.+.++|+.|++.+++ ..+ .
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~~~~~~~~~ 100 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPF---GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG-KFIKTPPGVSAP 100 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTT---SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBT-CCCCCCTTSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC-CEEcCCccccCC
Confidence 3589999999999999999999999 9999999999876 899999999999999999999974 455 5
Q ss_pred ceeEEEecCC
Q 022209 72 NSYLKASDAQ 81 (301)
Q Consensus 72 gr~LkV~~a~ 81 (301)
+++|+|..|.
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 6677777654
No 132
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.59 E-value=1.3e-15 Score=133.52 Aligned_cols=105 Identities=12% Similarity=-0.004 Sum_probs=83.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..||||||||+++|+++|+++|+++ |+|.+|+|+.|+. +||||||+|.+.++|++|++.++ +..+.|+.|++.
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~-~~~~~g~~i~~~ 90 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPA---GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FDVIKGKPVRIM 90 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhh---CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhh-hhhcCCcccccc
Confidence 3589999999999999999999999 9999999999875 88999999999999999999997 468899999999
Q ss_pred cCCCCCCCCCCCCCCCCccCCCceEEecccc---cCCeeEEEee
Q 022209 79 DAQRRTPHYAKRGIPHYQLGDDLKLNFGCHI---SKDKFSVLWS 119 (301)
Q Consensus 79 ~a~~di~~~pRp~~~~~r~~~~~~l~~G~~v---s~~~f~v~w~ 119 (301)
.+..... . ..- ...+|.+|.+- +++.+.-+.+
T Consensus 91 ~~~~~~~--~------~~~-~~~~l~v~nl~~~~t~~~l~~~F~ 125 (213)
T 4f02_A 91 WSQRDPS--L------RKS-GVGNIFIKNLDKSIDNKALYDTFS 125 (213)
T ss_dssp ECCCCTH--H------HHH-CTTEEEEESCCTTCCHHHHHHHHG
T ss_pred ccccccc--c------ccc-ccccceECCcccccHHHHHHHHHh
Confidence 8765543 1 111 33456666653 4444444444
No 133
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.59 E-value=3.6e-15 Score=126.34 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=76.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+++|||+|||+.+|++||+++|+.+ |.|.+|+|+.++. +||||||+|.+.++|++|++. + +..++|+.|.|.
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~-~~~~~g~~l~v~ 87 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQW---GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-R-PHKVDGRVVEPK 87 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-C-SCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-C-CCEECCEEeeee
Confidence 4689999999999999999999999 9999999998865 899999999999999999988 3 468999999999
Q ss_pred cCCCCCCCCCCCCCCCCccCCCceEEecccc
Q 022209 79 DAQRRTPHYAKRGIPHYQLGDDLKLNFGCHI 109 (301)
Q Consensus 79 ~a~~di~~~pRp~~~~~r~~~~~~l~~G~~v 109 (301)
.+...... .++ .... ..-+|.+|.+-
T Consensus 88 ~~~~~~~~-~~~---~~~~-~~~~l~V~nLp 113 (196)
T 1l3k_A 88 RAVSREDS-QRP---GAHL-TVKKIFVGGIK 113 (196)
T ss_dssp ECCC----------------CCSEEEEECCT
T ss_pred cccCcccc-ccc---ccCC-CcceEEEeCCC
Confidence 87665431 122 2222 44677777763
No 134
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.59 E-value=2.3e-15 Score=125.39 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=69.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
.++|||||||+.+|+++|+++|++| |.|.+++|..+ +||||||+|.+.++|+.|++.+++ ..++|+.|+|+.+.
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYY---GPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDG-RTLCGCRVRVELSN 146 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHH---SCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSS-SCSSSSCCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhh---CCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEEcC
Confidence 3689999999999999999999999 99999999877 799999999999999999999974 57899999999876
Q ss_pred CC
Q 022209 82 RR 83 (301)
Q Consensus 82 ~d 83 (301)
..
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 135
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.59 E-value=6.7e-15 Score=115.22 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=68.4
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
++|||+|||+.+|++||+++|++| |.|..++|. ||||||+|++.++|++|++.+++ ..++|+.|+|..+..
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQF---GKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNG-KDLEGENIEIVFAKP 82 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHH---SCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTT-EEETTEEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCC-CccCCCEEEEEEcCC
Confidence 689999999999999999999999 999999986 78999999999999999999874 689999999999877
Q ss_pred CCC
Q 022209 83 RTP 85 (301)
Q Consensus 83 di~ 85 (301)
...
T Consensus 83 ~~~ 85 (103)
T 2dgu_A 83 PDQ 85 (103)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 136
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.4e-15 Score=113.97 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=66.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
.++|||||||+.+|++||+++|+++ |.|.+| +.++. .+ ||||+|++.++|++|++ ++ +..++|+.|+|+.+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~---G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~-g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAF---GPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QS-QHSLGGHRLRVRPR 79 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGT---SCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CS-CCEETTEECCCBCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cC-CeEECCEEEEEEEC
Confidence 3689999999999999999999999 999987 55554 55 99999999999999999 76 47899999999988
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
.....
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76544
No 137
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=1.3e-15 Score=126.64 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=67.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEE-EEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVS-DVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~-~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+++|++||++||+++ |.|. +|+|+.|++ +||||||+|+++++|++||+. ++ ..++||+|+|.
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~---~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~-~~l~gR~I~V~ 116 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL---EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HK-ERIGHRYIEVF 116 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS---CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TT-CCBTTBCCCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC---CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CC-CEECCEEEEEE
Confidence 3689999999999999999999998 5443 999999877 999999999999999999996 33 78999999998
Q ss_pred cCCC
Q 022209 79 DAQR 82 (301)
Q Consensus 79 ~a~~ 82 (301)
.+..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7654
No 138
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.7e-15 Score=117.40 Aligned_cols=75 Identities=9% Similarity=0.070 Sum_probs=68.2
Q ss_pred CceEEEeCCCc-cccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFAS-HVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
+.+|||+|||+ .+|+++|+++|++| |.|.+++|. ||||||+|++.++|+.|++.+++ ..++|+.|+|..+
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~---G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~~a 80 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPY---GHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQ-EMNFGKKLILEVS 80 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTT---CCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTC-SSCBTTTBCEEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCC-CeeCCcEEEEEEc
Confidence 46899999999 99999999999999 999999994 89999999999999999999874 5788999999998
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
....-
T Consensus 81 ~~~~~ 85 (96)
T 2kvi_A 81 SSNAR 85 (96)
T ss_dssp ECCCC
T ss_pred CcCCC
Confidence 76643
No 139
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.9e-16 Score=128.27 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=67.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCce----EEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGT----VSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYL 75 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~----V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~L 75 (301)
..+|||+|||+++|++||++||++| |. |.+|+|+.|++ +||||||+|+++++|++|++. + +..++||+|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~---g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~-~~~l~gR~i 97 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQH---CPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-H-KDLLGKRYI 97 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTT---SCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-T-TEESSSCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhh---CCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-C-CCeeCCeEE
Confidence 3589999999999999999999999 65 47899998866 899999999999999999997 4 478999999
Q ss_pred EEecCCC
Q 022209 76 KASDAQR 82 (301)
Q Consensus 76 kV~~a~~ 82 (301)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987654
No 140
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.58 E-value=1.2e-15 Score=133.74 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=72.1
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
.+|||+|||+++|+++|+++|+.| |.|.+|+|+.|.. +||||||+|++.++|++||+.+|+ ..++|+.|+|..|.
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng-~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG-MLLNDRKVFVGRFK 179 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECC
T ss_pred ccceECCcccccHHHHHHHHHhhc---CCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC-CEECCEEEEEEEcC
Confidence 579999999999999999999999 9999999999877 999999999999999999999974 68999999999886
Q ss_pred CCCCC-----CCCCCCCCCccCCCceEEeccccc
Q 022209 82 RRTPH-----YAKRGIPHYQLGDDLKLNFGCHIS 110 (301)
Q Consensus 82 ~di~~-----~pRp~~~~~r~~~~~~l~~G~~vs 110 (301)
...-. .......++.+ ++.....|-+++
T Consensus 180 ~~~~~~~~~~~~~~~~~p~~~-P~~~g~~g~~vt 212 (213)
T 4f02_A 180 SRKEREAELGARAKEFYPYDV-PDYAGSSGRIVT 212 (213)
T ss_dssp CHHHHHHHHC------------------------
T ss_pred CCcccchhhhcccCCCCCCCC-CCCCCCccccCC
Confidence 53110 01112234455 555555555554
No 141
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.4e-15 Score=114.41 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=66.2
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
++++|||||||+++|++||+++|++| |+|.+++|..+ +||||||+|++.++|++|+. ..+.++|+.|+|..+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~---~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY---GDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG---EDLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT---SCCCEEECCSS--CCSCCEEECSCHHHHHHTTT---CEEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc---CCeeEEEEecC--CCCEEEEEECCHHHHHHHhc---CCceeCCEEEEEEec
Confidence 36799999999999999999999999 99999999865 89999999999999975422 246779999999987
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
....-
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 142
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=115.44 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=66.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+++|||+|||+.+|++||+++|+++ |.|..+ ..+..+||||||+|++.++|+.|++.++ +..++|+.|+|..+.
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~---g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDA---LEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQ-GAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSE---EEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTT-EEEETTEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC---CcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEEEcC
Confidence 4689999999999999999999998 888766 2222289999999999999999999987 468999999999876
Q ss_pred CCC
Q 022209 82 RRT 84 (301)
Q Consensus 82 ~di 84 (301)
...
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 143
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.3e-15 Score=128.83 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=67.3
Q ss_pred CCceEEEeCC----CccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCC-----HHH---HHHHHHHhC
Q 022209 1 MAKKISLYGF----ASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTT-----VKA---AELIKCLAS 65 (301)
Q Consensus 1 M~~tI~Vgnl----p~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s-----~ea---A~~Ai~~~~ 65 (301)
|.++|||||| |+++++++|++||++| |+|.+|++++|+. |||||||+|.+ .++ |..||....
T Consensus 1 mp~kI~VgnL~~~~~~~tte~~Lk~~Fs~f---GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ 77 (136)
T 2j8a_A 1 MSCEIVVYPAQDSTTTNIQDISIKNYFKKY---GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHE 77 (136)
T ss_dssp -CCEEEEEESSSSCCCCCCHHHHHHHHHTT---SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 8999999999 9999999999999999 9999999999997 89999999995 233 777777322
Q ss_pred -CCccccceeEEEecCCC
Q 022209 66 -VRLSYGNSYLKASDAQR 82 (301)
Q Consensus 66 -~~l~~~gr~LkV~~a~~ 82 (301)
++..++||.|+|+.-+.
T Consensus 78 lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 78 SSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp TTCEEETTEEEEEEECCT
T ss_pred hcCCeecCcEEEEEECcc
Confidence 57899999999986443
No 144
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=6.5e-15 Score=126.55 Aligned_cols=80 Identities=13% Similarity=0.291 Sum_probs=74.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+|++||+++|+.| |.|..++|..++. +||||||+|++.++|++|++.+++ ..++|+.|+|+
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~i~V~ 200 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAF---GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL-FDLGGQYLRVG 200 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTS---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CBCSSSBCEEE
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhcc---CCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC-CEeCCcEEEEE
Confidence 3689999999999999999999999 9999999998864 799999999999999999999974 68999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.....
T Consensus 201 ~a~~~~~ 207 (216)
T 2qfj_A 201 KAVTPPM 207 (216)
T ss_dssp ECSSCSS
T ss_pred EecCCCC
Confidence 9888765
No 145
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.57 E-value=2e-15 Score=135.90 Aligned_cols=76 Identities=9% Similarity=0.125 Sum_probs=70.4
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCc--eEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEG--TVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G--~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
.+|||+|||+.+|+++|+++|++| | +|.+|+|+.|+. +||||||+|++.++|++||+.+++ ..++|+.|+|
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~---G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng-~~~~Gr~l~V 144 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSL---GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK-RELHGQNPVV 144 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTT---TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT-SCBTTBCCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHH---CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CeECCEEeEE
Confidence 479999999999999999999999 9 999999999975 899999999999999999999874 6899999999
Q ss_pred ecCCC
Q 022209 78 SDAQR 82 (301)
Q Consensus 78 ~~a~~ 82 (301)
..|..
T Consensus 145 ~~a~~ 149 (229)
T 3q2s_C 145 TPVNK 149 (229)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 97754
No 146
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=3.7e-15 Score=126.52 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=72.3
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||+|||+.+|+++|+++|++| |.|..|+|..++. +||||||+|.+.++|+.||..+++ ..++|+.|+|..
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~ 148 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDY---GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG-AEIMGQTIQVDW 148 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcC---CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEEE
Confidence 579999999999999999999999 9999999998864 899999999999999999999974 688999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
+.....
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 877654
No 147
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.2e-16 Score=125.82 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=66.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCC-C--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK-G--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr-~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+|++||+++|+.+ |.|..+.++.++ + +||||||+|++.++|++||+ ++ +..++|+.|+|.
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~---G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-g~~~~gr~i~V~ 99 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKL---DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH-KQYMGNRFIQVH 99 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSS---CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC-SBCSTTSCBEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC-CCeECCcEEEEE
Confidence 3589999999999999999999999 999875555443 3 89999999999999999999 75 578999999999
Q ss_pred cCCC
Q 022209 79 DAQR 82 (301)
Q Consensus 79 ~a~~ 82 (301)
.|..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8765
No 148
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=121.36 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=68.4
Q ss_pred CceEEE--eCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccc-----ccee
Q 022209 2 AKKISL--YGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSY-----GNSY 74 (301)
Q Consensus 2 ~~tI~V--gnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~-----~gr~ 74 (301)
+++||| ||||+.+|+++|+++|++| |+|.++.|.+ +||||||+|++.++|++|++.+|+. .+ +|++
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~f---G~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~-~~~~~lg~g~~ 97 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKC---GLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGK-EVVDDLGQKIT 97 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHH---SCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTC-EEECTTSCEEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhc---CCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCC-EEccccCCCcE
Confidence 468999 8899999999999999999 9999998875 4799999999999999999999853 44 6899
Q ss_pred EEEecCCCCCC
Q 022209 75 LKASDAQRRTP 85 (301)
Q Consensus 75 LkV~~a~~di~ 85 (301)
|.|..+..-+.
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999877665
No 149
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.9e-15 Score=117.09 Aligned_cols=73 Identities=8% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC------CCCeEEEEeCCHHHHHHHHHHhCCCcccccee
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG------SRAHAIVEFTTVKAAELIKCLASVRLSYGNSY 74 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~------SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~ 74 (301)
++++|||||||+.+|+++|+++|++| |.|. +.++.++. +||||||+|+++++|++||+.++ .++|+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~---G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~---~~~G~~ 79 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRF---GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL---EEDGKL 79 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTT---CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE---EETTEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc---CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh---hcCCcE
Confidence 36799999999999999999999999 9999 88887752 79999999999999999999984 467787
Q ss_pred EEEecC
Q 022209 75 LKASDA 80 (301)
Q Consensus 75 LkV~~a 80 (301)
|.+..+
T Consensus 80 ~~~~~~ 85 (114)
T 2dnl_A 80 YLCVSS 85 (114)
T ss_dssp EEEECC
T ss_pred EEeccC
Confidence 777643
No 150
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.3e-15 Score=114.19 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=66.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|||+|||+.+|++||+++|+.+ + .++++.++. +||||||+|++.++|+.||+.+++ ..++|+.|+|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~ 87 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDGS---V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVTLD 87 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTTC---S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCEEEEeCCCCccCHHHHHHHhcCC---e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEE
Confidence 4689999999999999999999987 4 456666653 899999999999999999999874 68999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+....-
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9877653
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.56 E-value=8.5e-15 Score=120.87 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=79.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+++|++||+++|+++ |.|.+++|..++. +||||||+|.++++|+.|++.++ +..++|+.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-~~~~~g~~l~v~ 78 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAI---GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN-GITVRNKRLKVS 78 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcC-CCEeCCcEEEEE
Confidence 4689999999999999999999999 9999999998864 89999999999999999999886 468899999999
Q ss_pred cCCCCCCCCCCCCCCCCccCCCceEEeccccc
Q 022209 79 DAQRRTPHYAKRGIPHYQLGDDLKLNFGCHIS 110 (301)
Q Consensus 79 ~a~~di~~~pRp~~~~~r~~~~~~l~~G~~vs 110 (301)
.+..... . . +..+|.++.+..
T Consensus 79 ~~~~~~~--~--------~-~~~~l~v~nl~~ 99 (168)
T 1b7f_A 79 YARPGGE--S--------I-KDTNLYVTNLPR 99 (168)
T ss_dssp ECCCCSS--T--------T-TTCEEEEESCCT
T ss_pred ecCCCcc--c--------C-CCCCEEEeCCCC
Confidence 8765532 1 2 345667776543
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=9.4e-15 Score=119.92 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=79.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+++|++||+++|+++ |.|.++++..++. +||||||+|.++++|+.|++.++ +..++|+.|+|.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-~~~~~g~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN-GLRLQTKTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC-CCccCCceEEEE
Confidence 4689999999999999999999999 9999999998874 88999999999999999999887 468899999999
Q ss_pred cCCCCCCCCCCCCCCCCccCCCceEEecccc
Q 022209 79 DAQRRTPHYAKRGIPHYQLGDDLKLNFGCHI 109 (301)
Q Consensus 79 ~a~~di~~~pRp~~~~~r~~~~~~l~~G~~v 109 (301)
.+..... .. +..+|.++.+.
T Consensus 78 ~~~~~~~----------~~-~~~~l~v~nl~ 97 (167)
T 1fxl_A 78 YARPSSA----------SI-RDANLYVSGLP 97 (167)
T ss_dssp ECCCCCG----------GG-TTCEEEEESCC
T ss_pred ecCCCcc----------cC-CCCcEEECCCC
Confidence 8765432 12 44566777654
No 153
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=8e-15 Score=110.44 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=63.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCC-CCc-------eEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccce
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHT-GEG-------TVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNS 73 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~-g~G-------~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr 73 (301)
+++|||||||+.+|++||+++|+++. -.| .|.++++..+ ||||||+|++.++|++|+ .++ +..++|+
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~-g~~~~g~ 80 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFD-GIIFQGQ 80 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGT-TCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcC-CCEECCe
Confidence 57899999999999999999999971 014 8999998865 799999999999999999 776 4689999
Q ss_pred eEEEec
Q 022209 74 YLKASD 79 (301)
Q Consensus 74 ~LkV~~ 79 (301)
.|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999973
No 154
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.7e-16 Score=124.87 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=72.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEE--------EEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccc
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSD--------VEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSY 70 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~--------~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~ 70 (301)
..+|||+|||+.++++||+++|+++ |.|.. ++|..++. +||||||+|++.++|+.|++.+++ ..+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~ 82 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQI---GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG-KEF 82 (116)
Confidence 4689999999999999999999999 99998 89998864 899999999999999999999874 688
Q ss_pred cceeEEEecCCCCCC
Q 022209 71 GNSYLKASDAQRRTP 85 (301)
Q Consensus 71 ~gr~LkV~~a~~di~ 85 (301)
+|+.|+|+.+....-
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999998876643
No 155
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=1.1e-14 Score=120.72 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=68.8
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCcccc--ceeEEEe
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYG--NSYLKAS 78 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~--gr~LkV~ 78 (301)
.+|||+|||+.+|+++|+++|++| |.|.+++|..+.+ +||||||+|++.++|++|++.+++...++ |++|+|+
T Consensus 96 ~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 96 RKLFIGMISKKCTENDIRVMFSSF---GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CeEEEcCCCCcCCHHHHHHHHHhC---CCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 589999999999999999999999 9999999998876 89999999999999999999998654555 4999998
Q ss_pred cCC
Q 022209 79 DAQ 81 (301)
Q Consensus 79 ~a~ 81 (301)
-|+
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 764
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.4e-14 Score=118.71 Aligned_cols=76 Identities=13% Similarity=0.047 Sum_probs=69.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|+|+|||+.+|+++|+++|+++ |.|.++++..+.. +||||||+|.+.++|++|++.+++ ..++|+.|+|+
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v~ 162 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDF---PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG-QDLNGRPLRIN 162 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTS---TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CceEEECCCCCCCCHHHHHHHHhcc---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CccCCcEEEEE
Confidence 3589999999999999999999999 9999999998854 899999999999999999999974 57999999999
Q ss_pred cCC
Q 022209 79 DAQ 81 (301)
Q Consensus 79 ~a~ 81 (301)
.|.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 875
No 157
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.8e-14 Score=127.19 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=70.4
Q ss_pred CceEEEeCCC-ccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFA-SHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp-~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
+.+|||+||| +.+|+++|+++|++| |.|.+|+|+.+ +||||||+|++.++|+.||+.+|+ ..+.|+.|+|+.+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~---G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng-~~~~g~~l~v~~s 77 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLY---GNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNN-NFMFGQKMNVCVS 77 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTT---SCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhc---CCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCC-CEECCceEEEEEc
Confidence 4689999999 899999999999999 99999999875 589999999999999999999974 6899999999988
Q ss_pred CCCC
Q 022209 81 QRRT 84 (301)
Q Consensus 81 ~~di 84 (301)
....
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 158
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.4e-14 Score=108.92 Aligned_cols=75 Identities=15% Similarity=0.241 Sum_probs=67.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+.+|||+|+ .+|++||+++|++| |.|.+|+|. .+||||||+|++.++|++||+.+++ ..++|+.|+|..+.
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~---G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPF---GNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNG-TQVESVQLKVNIAR 85 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTT---SCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTT-EEETTEEEEEECCS
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhC---CCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEEECC
Confidence 568999995 89999999999999 999999994 3789999999999999999999974 68899999999987
Q ss_pred CCCC
Q 022209 82 RRTP 85 (301)
Q Consensus 82 ~di~ 85 (301)
....
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 159
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=1.1e-14 Score=116.98 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=64.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCcccccee-----EE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSY-----LK 76 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~-----Lk 76 (301)
+.+|||+|||+.+|++||+++|+++ |+|..|+|..+ |||||+|++.++|++||+.+|+ ..++|+. ++
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g-~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREA---GDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDN-TKFRSHEGETAYIR 87 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGG---SCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTT-CBCCCTTSCCCBCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCC-CEECCcEeeeEEEE
Confidence 3589999999999999999999999 99999999877 9999999999999999999974 6789987 77
Q ss_pred EecCCCCC
Q 022209 77 ASDAQRRT 84 (301)
Q Consensus 77 V~~a~~di 84 (301)
|.++....
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 77655543
No 160
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=9.8e-15 Score=126.61 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=73.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+.+|||+|||+.++++||+++|+++ |.|..|+|..+++ +||||||+|++.++|++|++.+++ ..++|+.|+|..
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng-~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG-VPLDGRPMDIQL 163 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHT---SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTT-CBCSSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCC-CEECCEEEEEEE
Confidence 3589999999999999999999999 9999999999876 899999999999999999999874 689999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
|.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 887655
No 161
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.54 E-value=1e-14 Score=128.03 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=69.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.++|||+|||+.+|+++|+++|+++ |.|.+|+|..+.+ +||||||+|++.++|+.|++.++ ..++|+.|+|..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~---G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~--~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDK---GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG--QKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTS---CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT--CEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcC---CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC--CeECCEEEEEEE
Confidence 3689999999999999999999999 9999999998876 89999999999999999998765 489999999987
Q ss_pred CCC
Q 022209 80 AQR 82 (301)
Q Consensus 80 a~~ 82 (301)
+.+
T Consensus 184 ~~~ 186 (193)
T 2voo_A 184 KDD 186 (193)
T ss_dssp TTT
T ss_pred hHH
Confidence 554
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=1.2e-14 Score=120.68 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=69.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+|++||+++|+++ |.|..++|..++. +||||||+|++.++|++|++.+++ ..++|+.|+|+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~ 169 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSF---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG-MQLGDKKLLVQ 169 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhc---CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC-CEECCeEEEEE
Confidence 3689999999999999999999999 9999999999863 899999999999999999999974 68999999998
Q ss_pred cC
Q 022209 79 DA 80 (301)
Q Consensus 79 ~a 80 (301)
.|
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.53 E-value=9.6e-15 Score=120.71 Aligned_cols=76 Identities=21% Similarity=0.355 Sum_probs=69.4
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||+|||+++|+++|+++|+++ |.|..++|..++. +||||||+|++.++|++|++ + ++..++|+.|+|..
T Consensus 88 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~-~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 88 GKIFVGGIGPDVRPKEFEEFFSQW---GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N-KFIDFKDRKIEIKR 162 (167)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHTT---SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C-SEECSSSSCEEEEE
T ss_pred CeEEECCCCCCCCHHHHHHHHHhC---ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C-CCEEeCCeEEEEee
Confidence 589999999999999999999999 9999999998864 99999999999999999998 4 45789999999998
Q ss_pred CCCC
Q 022209 80 AQRR 83 (301)
Q Consensus 80 a~~d 83 (301)
|.+.
T Consensus 163 a~pk 166 (167)
T 2cjk_A 163 AEPR 166 (167)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7643
No 164
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=110.44 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=68.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEE-eecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVE-VGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~-V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
+.+|||+|||+.+|+++|+++|++| |.|.+++ |..++. .|.|||+|.+.++|+.|+..+++ ..++|+.|+|..|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~~~~i~~~~~-~~~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~V~~a 89 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQY---GVVESCEQVNTDSE-TAVVNVTYSSKDQARQALDKLNG-FQLENFTLKVAYI 89 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHH---SCEEEEEEECCSSS-SEEEEEEESSHHHHHHHHHHHTT-CBCSSCBCEEEEC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhc---CCeEEEEEeecCCC-CCEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEEc
Confidence 3589999999999999999999999 9999995 777764 34499999999999999999874 6889999999988
Q ss_pred CCCC
Q 022209 81 QRRT 84 (301)
Q Consensus 81 ~~di 84 (301)
.+..
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7653
No 165
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=4.1e-14 Score=121.04 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=71.7
Q ss_pred CC-ceEEEeCCCc-cccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 1 MA-KKISLYGFAS-HVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 1 M~-~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
|+ ++|||+|||+ ++++++|+++|+++ |.|.+|+|..++ ||||||+|.+.++|+.|++.+++ ..++|+.|+|.
T Consensus 1 m~~~~l~v~nlp~~~~~~~~l~~~F~~~---G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~ 74 (198)
T 1qm9_A 1 MGNSVLLVSNLNPERVTPQSLFILFGVY---GDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNG-HKLHGKPIRIT 74 (198)
T ss_dssp CCCCEEEEECCCSSSCCHHHHHHHHHTT---CCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTT-CCCSSCCCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCC-CeecCeEEEEE
Confidence 54 6899999999 99999999999999 999999999876 89999999999999999998874 67899999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+..+..
T Consensus 75 ~a~~~~~ 81 (198)
T 1qm9_A 75 LSKHQNV 81 (198)
T ss_dssp ECCCCSC
T ss_pred EecCCCc
Confidence 8876644
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.52 E-value=1.9e-14 Score=118.97 Aligned_cols=76 Identities=16% Similarity=0.273 Sum_probs=68.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||||||+++|+++|+++|+++ |.|.+++|+.++. +||||||+|.+.++|+.|++. ...++|+.|.|.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~g~~i~v~ 76 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKY---GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT---QHILDGKVIDPK 76 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTT---CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS---CCEETTEECCCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc---ccccCCeEcccc
Confidence 4689999999999999999999999 9999999998864 999999999999999999995 257899999988
Q ss_pred cCCCC
Q 022209 79 DAQRR 83 (301)
Q Consensus 79 ~a~~d 83 (301)
.+...
T Consensus 77 ~~~~~ 81 (167)
T 2cjk_A 77 RAIPR 81 (167)
T ss_dssp ECCCH
T ss_pred cccch
Confidence 75443
No 167
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.52 E-value=3.4e-14 Score=122.07 Aligned_cols=78 Identities=12% Similarity=0.222 Sum_probs=69.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+++|+++|+++|+.| |.|.+++|..++. +||||||+|.+.++|++|++.+++ ..++|+.|+|.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~l~v~ 103 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPF---GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS-VMLGGRNIKVG 103 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS-CCCC-CCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhC---CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC-CeeCCeeEEEe
Confidence 4689999999999999999999999 9999999998864 899999999999999999998874 68999999998
Q ss_pred cCCCC
Q 022209 79 DAQRR 83 (301)
Q Consensus 79 ~a~~d 83 (301)
.+...
T Consensus 104 ~~~~~ 108 (216)
T 2qfj_A 104 RPSNI 108 (216)
T ss_dssp CCSCC
T ss_pred cCCCc
Confidence 75544
No 168
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=120.45 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=67.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEE--------EeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccce
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDV--------EVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNS 73 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~--------~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr 73 (301)
+.+|||||||+.+|+++|+++|++| |.|..+ ++..+..+||||||+|.+.++|+.|+..+| +..++|+
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~---G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln-g~~~~g~ 120 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRY---VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN-GYVLFGK 120 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGG---CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT-TBEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC-CCEeCCc
Confidence 3589999999999999999999999 988764 333333399999999999999999999997 4688999
Q ss_pred eEEEecCCCCC
Q 022209 74 YLKASDAQRRT 84 (301)
Q Consensus 74 ~LkV~~a~~di 84 (301)
.|+|..|....
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999886643
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.51 E-value=3e-14 Score=120.61 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=69.0
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||+|||+++|+++|+++|+.| |.|..++|..++. +||||||+|++.++|++|+.. + +..++|+.|.|+.
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~-~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFEQY---GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K-YHTVNGHNCEVRK 179 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S-CCEETTEECEEEE
T ss_pred ceEEEeCCCCCCCHHHHHHHHhcC---CCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C-CcEECCEEEEEEe
Confidence 689999999999999999999999 9999999999864 899999999999999999987 3 4789999999998
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
|....-
T Consensus 180 a~~k~~ 185 (196)
T 1l3k_A 180 ALSKQE 185 (196)
T ss_dssp CC----
T ss_pred cCChhH
Confidence 876543
No 170
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.51 E-value=4.4e-14 Score=122.85 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=68.6
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccc--cceeEEEecCC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSY--GNSYLKASDAQ 81 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~--~gr~LkV~~a~ 81 (301)
+|||+|||+.+|+++|+++|++| |+|.++.|..++ +||||||+|++.++|+.|++.+++ ..+ +++.|+|+.++
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~f---G~V~~V~i~~k~-~rgfAFVeF~d~~~A~~Ai~~LnG-~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKF---GTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDG-QNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHH---SCEEEEEEEESS-SCEEEEEEESCHHHHHHHHHHSTT-BCSSSSCSCEEEEECS
T ss_pred EEEEeCcCCCCCHHHHHHHHHhc---CCEEEEEEEeCC-CCCEEEEEECCHHHHHHHHHHhCC-CEecCCCcEEEEEEec
Confidence 68999999999999999999999 999999997654 899999999999999999999985 455 35999999988
Q ss_pred CCCC
Q 022209 82 RRTP 85 (301)
Q Consensus 82 ~di~ 85 (301)
...+
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7644
No 171
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=3.3e-14 Score=120.56 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=72.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+++++|+++|+++ |.|..++|..++. +||||||+|++.++|+.|++.+++ ..++|+.|+|+
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 189 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSF---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG-MQLGDKKLLVQ 189 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTB---SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHc---CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 3689999999999999999999999 9999999998864 899999999999999999999974 68899999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.+..+.
T Consensus 190 ~a~~~~ 195 (198)
T 2yh0_A 190 RASVGA 195 (198)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 887653
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=3.3e-14 Score=117.76 Aligned_cols=95 Identities=21% Similarity=0.198 Sum_probs=75.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-----CCCeEEEEeCCHHHHHHHHHHhCCCcccc--cee
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-----SRAHAIVEFTTVKAAELIKCLASVRLSYG--NSY 74 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-----SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~--gr~ 74 (301)
+.+|||+|||+++|+++|+++|+++ |.|.+++|..++. +||||||+|.+.++|+.|++.+++...++ ++.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQY---GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence 5789999999999999999999999 9999999998864 68999999999999999999998533333 577
Q ss_pred EEEecCCCCCCCCCCCCCCCCccCCCceEEecccc
Q 022209 75 LKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHI 109 (301)
Q Consensus 75 LkV~~a~~di~~~pRp~~~~~r~~~~~~l~~G~~v 109 (301)
+.+..+..... ... +..+|.+|.+-
T Consensus 80 ~~~~~~~~~~~---------~~~-~~~~l~v~nl~ 104 (175)
T 3nmr_A 80 IQMKPADSEKN---------NAV-EDRKLFIGMIS 104 (175)
T ss_dssp CEEEECGGGCC---------SCG-GGSEEEEESCC
T ss_pred eEEcccccccc---------ccC-CCCeEEEcCCC
Confidence 77776554332 112 44567777764
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=1.7e-13 Score=113.66 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=65.6
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCe-EEEEeCCHHHHHHHHHHhCCCccccc--eeEEEecC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAH-AIVEFTTVKAAELIKCLASVRLSYGN--SYLKASDA 80 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGF-aFVqF~s~eaA~~Ai~~~~~~l~~~g--r~LkV~~a 80 (301)
.|||+|||+.+|+++|.++|++| |.|.+|.|.. + +|| |||+|++.++|+.|++.+++ ..+.| +.|+|+.|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~y---G~V~~v~i~~-~--~Gf~aFVef~~~~~A~~A~~~LnG-~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPV---GKVQRIVIFK-R--NGIQAMVEFESVLCAQKAKAALNG-ADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTT---SCEEEEEEEE-S--SSEEEEEEESSHHHHHHHHHHHTT-CCCBTTBSEEEEECC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhc---CCEEEEEEEe-C--CCCEEEEEECCHHHHHHHHHHhCC-CEecCCCeEEEEEEe
Confidence 37899999999999999999999 9999999975 3 397 99999999999999999985 45544 79999998
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
..+-+
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 87654
No 174
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1.8e-13 Score=114.73 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=68.5
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCe-EEEEeCCHHHHHHHHHHhCCCccccc--eeEEEecC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAH-AIVEFTTVKAAELIKCLASVRLSYGN--SYLKASDA 80 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGF-aFVqF~s~eaA~~Ai~~~~~~l~~~g--r~LkV~~a 80 (301)
.|||+|||+.+|+++|.++|++| |+|.+|.|..+ +||| |||+|++.++|+.|++.+|+. .+.| +.|+|..+
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~y---G~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~-~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKF---GTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTS---SCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTC-EEETTEEEEEEEEC
T ss_pred EEEECCCCCCCCHHHHHHHHhCc---CCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCC-eecCCCcEEEEEec
Confidence 68999999999999999999999 99999988753 5788 999999999999999999854 5544 89999998
Q ss_pred CCCCCCC
Q 022209 81 QRRTPHY 87 (301)
Q Consensus 81 ~~di~~~ 87 (301)
+.+-+++
T Consensus 104 k~~~l~v 110 (130)
T 3zzy_A 104 KLTSLNV 110 (130)
T ss_dssp SCSSCCC
T ss_pred CCCceeE
Confidence 8776543
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.5e-13 Score=121.59 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=71.2
Q ss_pred CceEEEeCCCc-cccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFAS-HVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
+.+|||+|||+ ++++++|+++|++| |.|.+++|..++ ||||||+|.+.++|++|++.+++ ..++|+.|+|..+
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~---G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g-~~~~g~~l~v~~a 107 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVY---GDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNG-HKLHGKPIRITLS 107 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHH---TCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTT-CBCSSSBCEEECC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhC---CCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEEEe
Confidence 46899999999 99999999999999 999999999886 89999999999999999998874 6889999999988
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
.....
T Consensus 108 ~~~~~ 112 (229)
T 2adc_A 108 KHQNV 112 (229)
T ss_dssp SCCCC
T ss_pred cCccc
Confidence 76544
No 176
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.46 E-value=1.2e-13 Score=113.84 Aligned_cols=75 Identities=11% Similarity=0.120 Sum_probs=67.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccc--eeEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGN--SYLK 76 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~g--r~Lk 76 (301)
+.+|+|+|||..+++++|+++|+++ |.|..++|..++. +||||||+|++.++|++|++.+++ ..++| +.|+
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~~~l~ 164 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKY---GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN-VIPEGGSQPLS 164 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSS---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CCCTTCSSCCE
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcC---CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC-CEecCCCeEEE
Confidence 3589999999999999999999999 9999999998873 889999999999999999999975 46766 9999
Q ss_pred EecC
Q 022209 77 ASDA 80 (301)
Q Consensus 77 V~~a 80 (301)
|+-|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8754
No 177
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.46 E-value=1.1e-13 Score=135.68 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=73.1
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||+|||+.+|+++|+++|++| |.|..|.|+.++. ++|||||+|++.++|++||..+|+ ..|+|+.|.|..
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng-~~i~gr~i~V~~ 178 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVY---GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG-KKIDGRRVLVDV 178 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHc---CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC-CEECCEEEEEEE
Confidence 589999999999999999999999 9999999998864 899999999999999999999974 689999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
+.....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 887654
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.46 E-value=1.8e-13 Score=114.41 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=66.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
..+|||+|||+++|+++|+++|+++ |.|..+ ..+..+||||||+|++.++|++|+..+++ ..++|+.|+|+.|.
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~---g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDA---LEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQG-AEIDGRSVSLYYTG 172 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTC---SEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTE-EEETTEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEEecC
Confidence 3589999999999999999999998 998877 22223999999999999999999999974 78999999999876
Q ss_pred CC
Q 022209 82 RR 83 (301)
Q Consensus 82 ~d 83 (301)
+.
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 179
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.45 E-value=1.6e-13 Score=112.04 Aligned_cols=75 Identities=15% Similarity=0.241 Sum_probs=67.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+.+|||||+ .+|++||+++|++| |.|.+|+|. .+||||||+|++.++|+.||+.+++ ..++|+.|+|..+.
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~---G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng-~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPF---GNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNG-TQVESVQLKVNIAR 109 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTT---CCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTT-CBCSSCBCEEEECC
T ss_pred CCEEEEcCC--CCCHHHHHHHHHcc---CCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEEEeC
Confidence 578999995 69999999999999 999999996 4889999999999999999999974 57899999999987
Q ss_pred CCCC
Q 022209 82 RRTP 85 (301)
Q Consensus 82 ~di~ 85 (301)
....
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7654
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=2.1e-13 Score=122.86 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=71.1
Q ss_pred CceEEEeCCCccccHHHHH----HHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVK----EFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk----~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
+++|||+|||+++|++||+ ++|+.| |.|.+|+|..+..+||||||+|.+.++|+.|++.+++ ..++|+.|+|
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~---G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v 84 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQF---GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG-FPFYDKPMRI 84 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhcc---CCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcC-CeeCCcEEEE
Confidence 4689999999999999977 899999 9999999997656999999999999999999999974 7889999999
Q ss_pred ecCCCCC
Q 022209 78 SDAQRRT 84 (301)
Q Consensus 78 ~~a~~di 84 (301)
..+..+.
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9876543
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=3.3e-13 Score=108.10 Aligned_cols=81 Identities=19% Similarity=0.085 Sum_probs=70.1
Q ss_pred CCceEEEeCCCc-----cccHHHHHHHHhcCCCCceEEEEEeecCCC----CCCeEEEEeCCHHHHHHHHHHhCCCcccc
Q 022209 1 MAKKISLYGFAS-----HVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKAAELIKCLASVRLSYG 71 (301)
Q Consensus 1 M~~tI~Vgnlp~-----~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~----SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~ 71 (301)
++++|+|.|+.. ..+++||++.|++| |+|.+|.|..++. |||||||+|++.++|++|++.+|+ ..|+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~---G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG-~~~~ 82 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY---GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG-RYFG 82 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG---SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT-CEET
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc---CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC-CEEC
Confidence 367899999973 34789999999999 9999999998752 899999999999999999999985 5899
Q ss_pred ceeEEEecCCCCCC
Q 022209 72 NSYLKASDAQRRTP 85 (301)
Q Consensus 72 gr~LkV~~a~~di~ 85 (301)
||.|+|+.+..+..
T Consensus 83 Gr~i~v~~a~~~~f 96 (105)
T 2pe8_A 83 GRVVKACFYNLDKF 96 (105)
T ss_dssp TEECEEEECCHHHH
T ss_pred CcEEEEEEcCHHHh
Confidence 99999998876543
No 182
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=2.4e-13 Score=111.44 Aligned_cols=74 Identities=9% Similarity=0.104 Sum_probs=65.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCcccccee--EE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSY--LK 76 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~--Lk 76 (301)
+.+|+|+|||+.+++++|+++|+++ |.|..+++..+.. +||||||+|++.++|++|++.+++ ..++|+. |+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~~~i~ 163 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPIT 163 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CCCTTCSSCCE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhc---CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC-CccCCCccceE
Confidence 3579999999999999999999999 9999999998864 789999999999999999999975 4778865 66
Q ss_pred Eec
Q 022209 77 ASD 79 (301)
Q Consensus 77 V~~ 79 (301)
|+-
T Consensus 164 v~~ 166 (167)
T 1fxl_A 164 VKF 166 (167)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.43 E-value=6.7e-14 Score=116.95 Aligned_cols=94 Identities=14% Similarity=0.044 Sum_probs=72.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+.+|||+|||+++|++||+++|+++ |.|..+.|..... +||||||+|.++++|++|++ ++ +..++|+.|+|..
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~---g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~-g~~~~g~~l~v~~ 87 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISEL---FAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT-GLKVFGNEIKLEK 87 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH---HHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG-GEEETTEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh---CCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cC-CCEeCCeEEEEec
Confidence 4689999999999999999999999 8887733332222 99999999999999999995 65 4788999999998
Q ss_pred CCCCCCCCCCCCCCCCccCCCceEEecccc
Q 022209 80 AQRRTPHYAKRGIPHYQLGDDLKLNFGCHI 109 (301)
Q Consensus 80 a~~di~~~pRp~~~~~r~~~~~~l~~G~~v 109 (301)
+..... + ... +..+|.+|.+-
T Consensus 88 ~~~~~~---~-----~~~-~~~~l~v~nlp 108 (175)
T 1fje_B 88 PKGRDS---K-----KVR-AARTLLAKNLS 108 (175)
T ss_dssp CCCSSC---S-----TTG-GGGEEEEESCC
T ss_pred CCCccc---c-----ccc-cCCEEEEeCCC
Confidence 765432 1 112 44567777654
No 184
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.43 E-value=7.8e-13 Score=112.06 Aligned_cols=75 Identities=17% Similarity=0.289 Sum_probs=63.7
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCc-----------eEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCcc
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEG-----------TVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLS 69 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-----------~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~ 69 (301)
|+++|||+|||+++|++||+++|+++ | .|.++++.. +||||||+|.+.++|++|+ .++ +..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~---g~i~g~~~~~~~~v~~~~~~~---~~g~afV~F~~~~~A~~Al-~l~-g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQ---MRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFD-GII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHH---HHHHTCCSSSSCSEEEEEEET---TTTEEEEEESCSHHHHHHG-GGT-TEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHH---HhhcccccCCCCceEEeEecC---CCCEEEEEeCCHHHHHHHH-Hhc-CCE
Confidence 67899999999999999999999998 5 455555432 7899999999999999999 665 578
Q ss_pred ccceeEEEecCCCC
Q 022209 70 YGNSYLKASDAQRR 83 (301)
Q Consensus 70 ~~gr~LkV~~a~~d 83 (301)
++|+.|+|..+...
T Consensus 75 ~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 75 FQGQSLKIRRPHDY 88 (198)
T ss_dssp ETTEEEEEECCCCC
T ss_pred EcCceEEEeCCCCC
Confidence 99999999987654
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.42 E-value=5.9e-13 Score=120.06 Aligned_cols=97 Identities=10% Similarity=0.040 Sum_probs=81.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+|+++|+++|+.+ |.|..++|..++. +||||||+|.+.++|+.|++.+++ ..++|+.|+|.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~i~v~ 170 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPF---GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG-KPLGPRTLYVH 170 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhc---CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEEE
Confidence 3589999999999999999999999 9999999998864 899999999999999999998874 68899999999
Q ss_pred cCCCCCCCCCCCCCCCCccCCCceEEeccccc
Q 022209 79 DAQRRTPHYAKRGIPHYQLGDDLKLNFGCHIS 110 (301)
Q Consensus 79 ~a~~di~~~pRp~~~~~r~~~~~~l~~G~~vs 110 (301)
.+..... + +... +..+|.++.+-.
T Consensus 171 ~a~~~~~--~-----~~~~-~~~~l~v~nlp~ 194 (284)
T 3smz_A 171 WTDAGQL--T-----PALL-HSRCLCVDRLPP 194 (284)
T ss_dssp ECCGGGC--C-----TTTT-SCSEEEEECCCT
T ss_pred ECCCCCC--C-----cccC-CccEEEEecCCc
Confidence 8876543 1 2223 556777777654
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=6e-13 Score=121.89 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=67.2
Q ss_pred CceEEEeCCCccc---------cHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccc--
Q 022209 2 AKKISLYGFASHV---------SARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSY-- 70 (301)
Q Consensus 2 ~~tI~Vgnlp~~v---------ta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~-- 70 (301)
.+||||||||..+ ++++|+++|++| |+|.+|+|+. +||||||+|++.++|+.|+++|++. .+
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f---G~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~-~l~~ 206 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL---GDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQ-TLLL 206 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT---SCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTC-CCCC
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHcc---CCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCC-EEec
Confidence 4689999999998 899999999999 9999999996 5799999999999999999999853 44
Q ss_pred ----------cceeEEEecCCCCCC
Q 022209 71 ----------GNSYLKASDAQRRTP 85 (301)
Q Consensus 71 ----------~gr~LkV~~a~~di~ 85 (301)
+|+.|.|+-|..++-
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC----
T ss_pred cccccccccCCCCEEEEEEccCCCC
Confidence 899999999988754
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=3.5e-13 Score=121.60 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=70.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCcccc---ceeEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYG---NSYLK 76 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~---gr~Lk 76 (301)
+.+|||+|||+.+|+++|+++|+.| |.|.+++|..|.+ +||||||+|++.++|.+|+..++++..+. +++|.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQF---GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhc---CCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 3689999999999999999999999 9999999998866 89999999999999999999996444444 99999
Q ss_pred EecCCCC
Q 022209 77 ASDAQRR 83 (301)
Q Consensus 77 V~~a~~d 83 (301)
|..+...
T Consensus 173 v~~~~~~ 179 (261)
T 3sde_A 173 VEPMEQF 179 (261)
T ss_dssp EEECCCE
T ss_pred Eeecccc
Confidence 9987764
No 188
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=8.9e-13 Score=105.59 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=62.4
Q ss_pred ce-EEEeCCCccccHHHHH----HHHhcCCCCc-eEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEE
Q 022209 3 KK-ISLYGFASHVSARAVK----EFLEGHTGEG-TVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLK 76 (301)
Q Consensus 3 ~t-I~Vgnlp~~vta~dLk----~~Fe~~~g~G-~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~Lk 76 (301)
.| |||+|||+.+++++|+ ++|++| | .|.++ ..|||||+|.+.++|++|++.++ +.++.||+|+
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~y---GG~Vl~V-------tgG~AfV~F~~~esA~~A~~~l~-G~~l~gr~i~ 77 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNC---GGKVLSI-------TGCSAILRFINQDSAERAQKRME-NEDVFGNRII 77 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTT---TCCEEEC-------CTTCEEEEESSHHHHHHHHHHHT-TCCSSSSCCE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHc---CCeeEEE-------ecCEEEEEECCHHHHHHHHHHhc-CCccCCceEE
Confidence 45 9999999999999855 899999 6 99988 23999999999999999999997 4689999999
Q ss_pred EecCCCC
Q 022209 77 ASDAQRR 83 (301)
Q Consensus 77 V~~a~~d 83 (301)
|+.|+.+
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9998775
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.39 E-value=9.3e-13 Score=119.23 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=75.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCc-eEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEG-TVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||+|||+.+++++|+++|+.+ | .|..++|..++. +||||||+|.+.++|+.|+..+++ ..++|+.|+|.
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 192 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDI---NVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG-LKIEGYTLVTK 192 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHT---TCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHh---CCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEEE
Confidence 3689999999999999999999999 9 999999998875 999999999999999999998874 68899999999
Q ss_pred cCCCCCCCCCCCCCCCCccCCCceEEecccc
Q 022209 79 DAQRRTPHYAKRGIPHYQLGDDLKLNFGCHI 109 (301)
Q Consensus 79 ~a~~di~~~pRp~~~~~r~~~~~~l~~G~~v 109 (301)
.+...... .|. ..... +..+|.++.+-
T Consensus 193 ~a~~~~~~-~~~--~~~~~-~~~~l~v~nlp 219 (292)
T 2ghp_A 193 VSNPLEKS-KRT--DSATL-EGREIMIRNLS 219 (292)
T ss_dssp ECCCC------------CC-TTTEEEEEEEC
T ss_pred ECCCCccc-ccc--cccCC-CCceEEEECCC
Confidence 87765431 111 11222 55677777764
No 190
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=2.3e-13 Score=108.60 Aligned_cols=71 Identities=24% Similarity=0.214 Sum_probs=62.6
Q ss_pred EEeCCCccccHHHHHHHH------------hcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCcccc
Q 022209 6 SLYGFASHVSARAVKEFL------------EGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYG 71 (301)
Q Consensus 6 ~Vgnlp~~vta~dLk~~F------------e~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~ 71 (301)
.++|||+.+++++|++.| ++| |+|.+|+|..++. |||||||+|+++++|++|+..+|+ ..++
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~---G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng-~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY---GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN-RWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTT-CEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccC---CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCC-CEEC
Confidence 367888999999888777 999 9999999998875 899999999999999999999975 5899
Q ss_pred ceeEEEecC
Q 022209 72 NSYLKASDA 80 (301)
Q Consensus 72 gr~LkV~~a 80 (301)
||.|+|..+
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999865
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.37 E-value=6.5e-13 Score=119.79 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=72.6
Q ss_pred CceEEEeCCCccc-cHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHV-SARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~v-ta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+|||+|||+++ |+++|+++|+.| |.|.+++|..+.+ +||||||+|++.++|+.|+..+++ ..++|+.|+|+
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 259 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAV---HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADG-LSLGGSHLRVS 259 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSS---SCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCC---CCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCC-CccCCeEEEEE
Confidence 4689999999995 999999999999 9999999998876 899999999999999999999974 67899999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.+.+...
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9877653
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.3e-12 Score=104.25 Aligned_cols=77 Identities=9% Similarity=0.079 Sum_probs=66.4
Q ss_pred CceEEEeCCCccc-----------cHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccc
Q 022209 2 AKKISLYGFASHV-----------SARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSY 70 (301)
Q Consensus 2 ~~tI~Vgnlp~~v-----------ta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~ 70 (301)
+++|+|.|+.... +++||+++|++| |+|.+|.| .|+.+||||||+|++.++|++|+..+|+ ..+
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~---G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng-~~~ 89 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF---GQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDG-RWF 89 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT---SCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTT-CEE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc---CCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCC-CEE
Confidence 5789999994433 268999999999 99999966 6666999999999999999999999974 688
Q ss_pred cceeEEEecCCCC
Q 022209 71 GNSYLKASDAQRR 83 (301)
Q Consensus 71 ~gr~LkV~~a~~d 83 (301)
+|+.|+|..+...
T Consensus 90 ~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 GGRQITAQAWDGT 102 (112)
T ss_dssp TTEECEEEECCSC
T ss_pred CCcEEEEEEeCCC
Confidence 9999999987654
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.37 E-value=1.4e-12 Score=117.54 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=67.0
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCcccc-ceeEEEecCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYG-NSYLKASDAQ 81 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~-gr~LkV~~a~ 81 (301)
++|||+|||..+|+++|+++|+.| |.|.+++|..++ +|||||+|.+.++|+.|++.+++ ..++ |+.|+|+-|+
T Consensus 208 ~~l~v~nl~~~~~~~~l~~~F~~~---G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 208 HILFLTNLPEETNELMLSMLFNQF---PGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQG-FKITQNNAMKISFAK 281 (282)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhc---CCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCC-cEeCCCCEEEEEEec
Confidence 679999999999999999999999 999999999665 79999999999999999999985 5667 9999998764
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.4e-12 Score=108.14 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=63.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCC-Cc-------eEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccce
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTG-EG-------TVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNS 73 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g-~G-------~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr 73 (301)
+++|||+|||+++|++||+++|+++.. .| .|.++++.. +||||||+|.++++|++|+ .++ +..++|+
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---~~g~afV~f~~~~~A~~A~-~~~-~~~~~g~ 78 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFD-GIIFQGQ 78 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---TTTEEEEEESSHHHHHHHG-GGT-TCEETTE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---CCCEEEEEeCCHHHHHHHH-HhC-CcEecCc
Confidence 478999999999999999999999810 02 667766654 5799999999999999999 665 4689999
Q ss_pred eEEEecCCCC
Q 022209 74 YLKASDAQRR 83 (301)
Q Consensus 74 ~LkV~~a~~d 83 (301)
.|+|..+...
T Consensus 79 ~i~v~~~~~~ 88 (172)
T 2g4b_A 79 SLKIRRPHDY 88 (172)
T ss_dssp ECEEECCSSC
T ss_pred eeeecCCccc
Confidence 9999975544
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.36 E-value=1.1e-12 Score=118.64 Aligned_cols=77 Identities=18% Similarity=0.341 Sum_probs=70.1
Q ss_pred CceEEEeCCCcc-ccHHHHHHHHhcCCCCceEEEEEeecCCC----CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEE
Q 022209 2 AKKISLYGFASH-VSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLK 76 (301)
Q Consensus 2 ~~tI~Vgnlp~~-vta~dLk~~Fe~~~g~G~V~~~~V~~dr~----SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~Lk 76 (301)
+.+|||+|||+. +|+++|+++|+.| |.|..++|..+.. +||||||+|++.++|++|+ .++ +..++|+.|+
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~-g~~~~g~~i~ 284 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGF---GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN-RSLLGNREIS 284 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGG---SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT-TEEETTEEEE
T ss_pred CceEEEECCCcccCCHHHHHHHHhcc---CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc-CCEECCcEEE
Confidence 368999999999 9999999999999 9999999998752 8999999999999999999 886 4689999999
Q ss_pred EecCCCC
Q 022209 77 ASDAQRR 83 (301)
Q Consensus 77 V~~a~~d 83 (301)
|..|...
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9987654
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.36 E-value=9.3e-13 Score=112.55 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=68.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCc-eEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCcccc-ceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEG-TVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYG-NSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~-gr~LkV~~ 79 (301)
+.+|||+|||+.+++++|+++|+++ | .|..++|..+ +||||||+|++.++|+.|++.+++ ..++ |+.|+|+.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSN---GGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHN-HDLGENHHLRVSF 193 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHT---TSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTS-SCCSSCCSCCEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHc---CCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcC-CccCCCCeEEEEe
Confidence 4679999999999999999999999 9 9999999764 489999999999999999999985 4667 99999998
Q ss_pred CCCCC
Q 022209 80 AQRRT 84 (301)
Q Consensus 80 a~~di 84 (301)
+...|
T Consensus 194 a~~~i 198 (198)
T 1qm9_A 194 SKSTI 198 (198)
T ss_dssp ECCCC
T ss_pred ecccC
Confidence 76543
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.35 E-value=2.6e-12 Score=113.62 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=68.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCc-eEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCcccc-ceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEG-TVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYG-NSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~-gr~LkV~~ 79 (301)
+.+|||+|||+.+++++|+++|+++ | +|..++|..+ +||||||+|++.++|++|++.+++ ..++ |+.|+|+.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g-~~~~~g~~l~v~~ 224 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSN---GGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHN-HDLGENHHLRVSF 224 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT---SCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTT-CBSSSSCBCEEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHc---CCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCC-CccCCCCeEEEEE
Confidence 3679999999999999999999999 9 9999999753 589999999999999999999975 5677 99999998
Q ss_pred CCCCC
Q 022209 80 AQRRT 84 (301)
Q Consensus 80 a~~di 84 (301)
+...|
T Consensus 225 a~~~i 229 (229)
T 2adc_A 225 SKSTI 229 (229)
T ss_dssp CSSCC
T ss_pred ecCCC
Confidence 77653
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.35 E-value=6.8e-13 Score=117.04 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=60.2
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceE--EEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccce
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTV--SDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNS 73 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V--~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr 73 (301)
++|||+|||+++|+++|+++|+++ |.| .+++|..++. ++|||||+|++.++|..||..+|+ ..++|+
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~---G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng-~~~~g~ 193 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDEL---GVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNH-YQMKNP 193 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHH---TCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTT-CEECCS
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhc---CCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCC-CCccCC
Confidence 579999999999999999999999 999 8999998875 679999999999999999999974 455555
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.30 E-value=3.9e-12 Score=114.76 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=65.6
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
.+|||||||+++|+++|+++|+.+ |.|.+|.|.. +||||||+|.+.++|+.|+..+++ ..++|+.|+|..+.
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g-~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERY---GEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDG-TILKSRPLRIRFAT 94 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGG---CCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTT-CEETTEECEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCC-cEECCceeEeeecc
Confidence 589999999999999999999999 9999999964 579999999999999999998874 57899999998753
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=8.1e-12 Score=99.84 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=67.4
Q ss_pred CceEEEeCC--Cccc--------cHHHHHHHHhcCCCCceEEEEEeecCCC-----CCCeEEEEeCCHHHHHHHHHHhCC
Q 022209 2 AKKISLYGF--ASHV--------SARAVKEFLEGHTGEGTVSDVEVGQNKG-----SRAHAIVEFTTVKAAELIKCLASV 66 (301)
Q Consensus 2 ~~tI~Vgnl--p~~v--------ta~dLk~~Fe~~~g~G~V~~~~V~~dr~-----SRGFaFVqF~s~eaA~~Ai~~~~~ 66 (301)
++.|.+.|+ |..+ ..+||++.|++| |+|.++.|..++. +||||||+|++.++|++|++.+|+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~---G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY---GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT---SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc---CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 567888887 4333 457999999999 9999999998863 789999999999999999999985
Q ss_pred CccccceeEEEecCCCCC
Q 022209 67 RLSYGNSYLKASDAQRRT 84 (301)
Q Consensus 67 ~l~~~gr~LkV~~a~~di 84 (301)
..|+||.|+|..++.+.
T Consensus 82 -~~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 82 -RKFANRVVVTKYCDPDS 98 (105)
T ss_dssp -CEETTEECEEEEECHHH
T ss_pred -CEeCCCEEEEEEeCHHH
Confidence 68999999999876553
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=8.4e-12 Score=119.66 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=62.2
Q ss_pred CceEEEeC--CCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCcc--ccce--eE
Q 022209 2 AKKISLYG--FASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLS--YGNS--YL 75 (301)
Q Consensus 2 ~~tI~Vgn--lp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~--~~gr--~L 75 (301)
+++||||| |++.+|++||+++|++| |+|.++.+.. +||||||+|++.++|++||+.+|+... ..|+ .|
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~---G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKC---GLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTT---SCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhc---CCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 47899999 68999999999999999 9999987754 789999999999999999999985322 3345 67
Q ss_pred EEecCC
Q 022209 76 KASDAQ 81 (301)
Q Consensus 76 kV~~a~ 81 (301)
.++.++
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 777664
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1e-10 Score=93.20 Aligned_cols=65 Identities=28% Similarity=0.252 Sum_probs=57.3
Q ss_pred ccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCCCC
Q 022209 12 SHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQRRT 84 (301)
Q Consensus 12 ~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~di 84 (301)
..+++++|+++|++| |.|..|+|. +.+||||||+|++.++|+.||+.++ .+.|+.|+|+.+..+.
T Consensus 27 ~~~te~~L~~~F~~~---G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~---~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY---GEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEV---GLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTT---SCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCC---BCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhc---CCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcC---CCCCCeEEEEEccCCC
Confidence 457899999999999 999999998 3599999999999999999999853 4689999999887665
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.17 E-value=4.6e-11 Score=97.81 Aligned_cols=79 Identities=15% Similarity=0.062 Sum_probs=67.7
Q ss_pred CceEEEeCCCcc-----ccHHHHHHHHhcCCCCceEEEEEeecCCC-------CCCeEEEEeCCHHHHHHHHHHhCCCcc
Q 022209 2 AKKISLYGFASH-----VSARAVKEFLEGHTGEGTVSDVEVGQNKG-------SRAHAIVEFTTVKAAELIKCLASVRLS 69 (301)
Q Consensus 2 ~~tI~Vgnlp~~-----vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-------SRGFaFVqF~s~eaA~~Ai~~~~~~l~ 69 (301)
+++|++.|+-.. -.++||++.|++| |+|.+|.|..++. +||||||+|++.++|++|+..+|+ ..
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~---G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG-r~ 95 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKF---GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG-RW 95 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTT---SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT-CE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC-CE
Confidence 678999998422 2479999999999 9999999998752 679999999999999999999985 59
Q ss_pred ccceeEEEecCCCCC
Q 022209 70 YGNSYLKASDAQRRT 84 (301)
Q Consensus 70 ~~gr~LkV~~a~~di 84 (301)
|+||.|+|+.++.+-
T Consensus 96 f~GR~i~v~~~~~~~ 110 (118)
T 3ue2_A 96 FAGRKVVAEVYDQER 110 (118)
T ss_dssp ETTEECEEEEECHHH
T ss_pred ECCcEEEEEEcChHh
Confidence 999999999876543
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.01 E-value=3.9e-10 Score=91.87 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=56.6
Q ss_pred cHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCCC
Q 022209 15 SARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQRR 83 (301)
Q Consensus 15 ta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~d 83 (301)
.++||++.|++| |+|.++.|..+. +||||||+|++.++|++|++.+|+ .+|+||.|+|+.+..+
T Consensus 30 l~edl~~~f~kf---G~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG-~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 30 IKDDVIEECNKH---GGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHG-RWFAGKMITAAYVPLP 93 (114)
T ss_dssp HHHHHHHHHTTT---TCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTT-CEETTEECEEEEECHH
T ss_pred HHHHHHHHHhcc---CCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEEEEcHH
Confidence 457899999999 999999886554 799999999999999999999985 6899999999987654
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=6.3e-09 Score=86.24 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=65.3
Q ss_pred CceEEEeCCCcc-ccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCC-HHHHHHHHHHhC-CCccccceeEEEe
Q 022209 2 AKKISLYGFASH-VSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTT-VKAAELIKCLAS-VRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~-vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s-~eaA~~Ai~~~~-~~l~~~gr~LkV~ 78 (301)
+.-|+|+|+++. ++.+||+++|++| |+|..|.+..+.. .|||.|.+ +++|+.|+..++ +++.+.|..+++.
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~---G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNH---GEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSS---CCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhc---CCEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 346999999999 9999999999999 9999999998874 69999999 899999999997 6789999988876
Q ss_pred cC
Q 022209 79 DA 80 (301)
Q Consensus 79 ~a 80 (301)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=1.5e-08 Score=80.34 Aligned_cols=73 Identities=12% Similarity=0.032 Sum_probs=61.4
Q ss_pred ceEEEeCCCc----cccH----HHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCcccccee
Q 022209 3 KKISLYGFAS----HVSA----RAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSY 74 (301)
Q Consensus 3 ~tI~Vgnlp~----~vta----~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~ 74 (301)
.||.|.-.|. +.-. .+|.+.|.+| |+|..++++.|+ +||+|.+.++|.+||+ +| +..++||.
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~---G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~-mn-G~~v~Gr~ 77 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASF---GEVILIRFVEDK-----MWVTFLEGSSALNVLS-LN-GKELLNRT 77 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT---CCEEEEEECSSS-----EEEEESSHHHHHHGGG-GT-TCEETTEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhC---CCeEEEEEecCC-----EEEEECChHHHHHHHh-cC-CeEeCCeE
Confidence 3777777662 2323 6799999999 999999999876 9999999999999999 76 57899999
Q ss_pred EEEecCCCCCC
Q 022209 75 LKASDAQRRTP 85 (301)
Q Consensus 75 LkV~~a~~di~ 85 (301)
|+|+.+.+|-+
T Consensus 78 LkV~lkt~dW~ 88 (91)
T 2dnr_A 78 ITIALKSPSGP 88 (91)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEeCCCCcc
Confidence 99999888764
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.71 E-value=1.2e-08 Score=89.67 Aligned_cols=68 Identities=16% Similarity=0.030 Sum_probs=58.9
Q ss_pred ccHHHHHHHHhcCCCCceEEEEEeecCCC-------CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCCCCC
Q 022209 14 VSARAVKEFLEGHTGEGTVSDVEVGQNKG-------SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQRRTP 85 (301)
Q Consensus 14 vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-------SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~di~ 85 (301)
-.++||.+.|++| |+|.++.|..+.. +|||+||+|++.++|++||..+|+ .+|+||.|.|..++.+-.
T Consensus 141 e~~~dl~~e~~~~---G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g-r~~~gr~i~~~~~~~~~f 215 (222)
T 3dxb_A 141 DLEGEVTEECGKF---GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG-RWFAGRKVVAEVYDQERF 215 (222)
T ss_dssp THHHHHHHHHTTT---SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT-CBSSSSBCEEEECCHHHH
T ss_pred HHHHHHHHHHHcc---CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcC-ceECCeEEEEEEcCHHHh
Confidence 3568999999999 9999999984432 789999999999999999999985 599999999998776543
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=9.9e-08 Score=76.16 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=57.8
Q ss_pred ceEEEeCCCcc-----ccH----HHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccce
Q 022209 3 KKISLYGFASH-----VSA----RAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNS 73 (301)
Q Consensus 3 ~tI~Vgnlp~~-----vta----~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr 73 (301)
.||.|.-++.+ .-. .+|.+.|++| |+|..+|++.|+ +||+|.+.++|.+||+ ++ +..++||
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~---G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~-ld-G~~v~Gr 85 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY---GTIVLVRINQGQ-----MLVTFADSHSALSVLD-VD-GMKVKGR 85 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH---SCCSEEEEETTE-----EEEECSCSHHHHHHHH-GG-GSEETTE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHC---CCEEEEEEecCc-----EEEEEcChHHHHHHHh-cC-CeeeCCe
Confidence 48888887743 212 5799999999 999999999998 9999999999999999 65 5799999
Q ss_pred eEEEec
Q 022209 74 YLKASD 79 (301)
Q Consensus 74 ~LkV~~ 79 (301)
.|+|+.
T Consensus 86 ~L~V~~ 91 (95)
T 1ufw_A 86 AVKISG 91 (95)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999986
No 209
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.97 E-value=3e-06 Score=61.47 Aligned_cols=27 Identities=41% Similarity=0.855 Sum_probs=23.1
Q ss_pred cccCCCCceeeeccCCCcccccChhhH
Q 022209 268 NKVNKDAVNCFFCKNKGHMKKACPKYK 294 (301)
Q Consensus 268 ~~~~~~~~~C~fc~k~gH~k~~c~~~~ 294 (301)
.......++||+|++.|||.++||+..
T Consensus 17 ~~~~~~~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 17 RRSQLDRDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp CSTTCCTTBCSSSCCBSSCGGGCTTCC
T ss_pred CCCCCCCCcceeCCCCCcccccCcCCc
Confidence 355677889999999999999999864
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=5.2e-05 Score=61.34 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=64.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcC--CCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGH--TGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~--~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+++|.|-|||..+.++-|.-|||+. .|-|.|.+++... +=|+|+|.+.++|++++... ...++|..|.|.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~--~H~L~~~~LsV~P 80 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQA--DHELHGAQLSLRP 80 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTCS--CCBSSSSBCEEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcCC--cceecCeEEEEEc
Confidence 4789999999999999999999995 5889999998863 77999999999999988774 3688999999998
Q ss_pred CC
Q 022209 80 AQ 81 (301)
Q Consensus 80 a~ 81 (301)
..
T Consensus 81 ~~ 82 (104)
T 2dhx_A 81 AP 82 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 211
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.91 E-value=3.1e-06 Score=57.42 Aligned_cols=24 Identities=46% Similarity=0.929 Sum_probs=20.6
Q ss_pred cCCCCceeeeccCCCcccccChhh
Q 022209 270 VNKDAVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 270 ~~~~~~~C~fc~k~gH~k~~c~~~ 293 (301)
.....++||+|+|.|||.++||+-
T Consensus 6 ~~~~~~~C~~Cgk~GH~ardCP~~ 29 (40)
T 1a6b_B 6 SQLDRDQCAYCKEKGHWAKDCPKK 29 (40)
T ss_dssp CSCCSSSCSSSCCTTCCTTSCSSS
T ss_pred CCCCCCeeeECCCCCcchhhCcCC
Confidence 345578999999999999999984
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00043 Score=56.86 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=65.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCC--CCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHT--GEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~--g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.++|-+.|||-+++..-++.|.+.+. -.|.+..+-+..|. |=|+|+|++.++|.+|.-+++ +..|+||.|++..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH---~GAivef~d~~~AgKasLaL~-G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF---NGAIIIFRDSKFAAKMLMILN-GSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT---TEEEEECSCHHHHHHHHHHHS-SEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC---CceEEEEccchhhHHHHhhcC-CeeecCeEEEecC
Confidence 46899999999999999999999873 35788899899888 789999999999999988876 5899999999864
No 213
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.19 E-value=9.9e-05 Score=46.25 Aligned_cols=21 Identities=24% Similarity=0.866 Sum_probs=18.4
Q ss_pred CCCceeeeccCCCcccccChh
Q 022209 272 KDAVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 272 ~~~~~C~fc~k~gH~k~~c~~ 292 (301)
+....||.|.|.||+.++|+.
T Consensus 4 r~~~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 4 RKVIRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CCCCBCTTTSCBSSCGGGCCS
T ss_pred CCCCEEEECCccccCHhHCcc
Confidence 345789999999999999986
No 214
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=96.90 E-value=0.00024 Score=43.47 Aligned_cols=20 Identities=35% Similarity=0.893 Sum_probs=17.8
Q ss_pred CceeeeccCCCcccccChhh
Q 022209 274 AVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~~ 293 (301)
..+||.|.+.||+.++||.-
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC
T ss_pred CCeeEeCCCCCcccccCCCc
Confidence 46899999999999999964
No 215
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.85 E-value=0.00085 Score=55.15 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=27.1
Q ss_pred EEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhC
Q 022209 34 DVEVGQNKG-SRAHAIVEFTTVKAAELIKCLAS 65 (301)
Q Consensus 34 ~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~ 65 (301)
.++|+.+.. ++|||||+|.+.++|++|+..++
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhc
Confidence 356666655 99999999999999999998875
No 216
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.13 E-value=0.0014 Score=47.20 Aligned_cols=19 Identities=42% Similarity=1.020 Sum_probs=17.0
Q ss_pred CceeeeccCCCcccccChh
Q 022209 274 AVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~ 292 (301)
...||-|.|+|||.+|||.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSG
T ss_pred CCccccCCCcCcccccCCC
Confidence 4579999999999999993
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.42 E-value=0.061 Score=44.25 Aligned_cols=68 Identities=9% Similarity=0.123 Sum_probs=54.9
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccc-eeEEEecC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGN-SYLKASDA 80 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~g-r~LkV~~a 80 (301)
-|-|.|||.+. ...+.++|+++ |+|.+.... ....+-.|+|+++.+|++|+.. |+..++| -.+-|.+-
T Consensus 26 wVtVFGFp~~~-~~~VL~~F~~~---G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~k--NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 26 WVTVFGFPQAS-ASYILLQFAQY---GNILKHVMS---NTGNWMHIRYQSKLQARKALSK--DGRIFGESIMIGVKPC 94 (119)
T ss_dssp EEEEECCCGGG-HHHHHHHHHTT---SCEEEEEEC---SSSSEEEEEESSHHHHHHHHTT--TTCEETTTEECEEEEC
T ss_pred EEEEECCCHHH-HHHHHHHHHhh---CcEEEeccC---CCCCeEEEEeCCHHHHHHHHHh--CCeEecCCEEEEEEEC
Confidence 48899999995 78899999998 999988762 2458999999999999999988 4556664 56666663
No 218
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.24 E-value=0.016 Score=47.26 Aligned_cols=64 Identities=13% Similarity=-0.075 Sum_probs=43.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHh-CCCccccceeEEEecCCCCCCCC------CCCCCCCCccCCCceEEecccc
Q 022209 43 SRAHAIVEFTTVKAAELIKCLA-SVRLSYGNSYLKASDAQRRTPHY------AKRGIPHYQLGDDLKLNFGCHI 109 (301)
Q Consensus 43 SRGFaFVqF~s~eaA~~Ai~~~-~~~l~~~gr~LkV~~a~~di~~~------pRp~~~~~r~~~~~~l~~G~~v 109 (301)
.+|+++|+|.+.++|++|++.+ | +..++| .+++..+....... +......... +.-+|.+|.+-
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~n-g~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~V~nl~ 82 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYAN-DNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCP-LDCKVYVGNLG 82 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHH-HHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSST-TSCEEEEESCC
T ss_pred ccccceeeecCHHHHHHHHHHHhc-CCCCCC-ceecccccCccccccccccccccccccCCC-CCCEEEEeCCC
Confidence 7899999999999999999988 5 457888 99998776521100 0001122223 56778888764
No 219
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=94.76 E-value=0.0072 Score=39.83 Aligned_cols=19 Identities=37% Similarity=0.819 Sum_probs=16.9
Q ss_pred CceeeeccCCCcccccChh
Q 022209 274 AVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~ 292 (301)
...||.|+++||+.++||+
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 3589999999999999985
No 220
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=94.45 E-value=0.012 Score=40.73 Aligned_cols=19 Identities=32% Similarity=0.941 Sum_probs=13.2
Q ss_pred CceeeeccCCCcccccChh
Q 022209 274 AVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~ 292 (301)
...||.|++.||+.++||.
T Consensus 27 ~~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 27 RQGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CCSCSSSCCSSCCGGGCCS
T ss_pred CCeeCcCCCcCCccCCCcC
Confidence 3567777777777777765
No 221
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=94.35 E-value=0.01 Score=39.09 Aligned_cols=18 Identities=33% Similarity=0.999 Sum_probs=16.6
Q ss_pred ceeeeccCCCcccccChh
Q 022209 275 VNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 275 ~~C~fc~k~gH~k~~c~~ 292 (301)
++||.|.+.||+.++||.
T Consensus 1 i~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 1 LTCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp CBCTTTCCBSSCTTTCCS
T ss_pred CeeeccCCCCcccccCCC
Confidence 479999999999999996
No 222
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=94.25 E-value=0.012 Score=38.39 Aligned_cols=18 Identities=44% Similarity=1.001 Sum_probs=16.0
Q ss_pred ceeeeccCCCcccccChh
Q 022209 275 VNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 275 ~~C~fc~k~gH~k~~c~~ 292 (301)
..||.|+++||+.++||.
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 589999999999999984
No 223
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=94.02 E-value=0.015 Score=37.83 Aligned_cols=17 Identities=29% Similarity=0.983 Sum_probs=16.0
Q ss_pred eeeeccCCCcccccChh
Q 022209 276 NCFFCKNKGHMKKACPK 292 (301)
Q Consensus 276 ~C~fc~k~gH~k~~c~~ 292 (301)
.||.|.++||+.++||.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 69999999999999986
No 224
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=93.74 E-value=0.018 Score=41.13 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.4
Q ss_pred CCceeeeccCCCcccccChhh
Q 022209 273 DAVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 273 ~~~~C~fc~k~gH~k~~c~~~ 293 (301)
....||.|.+.||+.++|+.-
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCT
T ss_pred CCcceeECCCCCCccCcCCCc
Confidence 456899999999999999963
No 225
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=93.58 E-value=0.018 Score=41.47 Aligned_cols=21 Identities=33% Similarity=0.722 Sum_probs=18.3
Q ss_pred CceeeeccCCCcccccChhhH
Q 022209 274 AVNCFFCKNKGHMKKACPKYK 294 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~~~ 294 (301)
...||.|.++||+.++||.-.
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCCC
Confidence 468999999999999999743
No 226
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=93.54 E-value=0.028 Score=42.41 Aligned_cols=19 Identities=37% Similarity=0.987 Sum_probs=11.7
Q ss_pred CceeeeccCCCcccccChh
Q 022209 274 AVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~ 292 (301)
...||.|.+.||+-++||.
T Consensus 46 ~~~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 46 PKKCHFCQSISHMVASCPL 64 (74)
T ss_dssp CCCCTTTCCTTSCGGGCTT
T ss_pred CCccCCcCCcCCccCcCcC
Confidence 4556666666666666664
No 227
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=93.52 E-value=0.018 Score=40.42 Aligned_cols=19 Identities=32% Similarity=0.849 Sum_probs=12.9
Q ss_pred CceeeeccCCCcccccChh
Q 022209 274 AVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~ 292 (301)
...||.|.+.||+.++||.
T Consensus 33 ~~~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 33 KKGCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp CCBCTTTCCBSSCGGGCSS
T ss_pred CCEeCCCCCcCCccCCCcC
Confidence 3567777777777777765
No 228
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.46 E-value=0.027 Score=40.94 Aligned_cols=20 Identities=35% Similarity=0.903 Sum_probs=17.7
Q ss_pred CceeeeccCCCcccccChhh
Q 022209 274 AVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~~ 293 (301)
...||.|.+.||+.++||.-
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGG
T ss_pred CCccCCcCCcCCccCcCCCc
Confidence 46899999999999999974
No 229
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=93.32 E-value=0.028 Score=40.52 Aligned_cols=20 Identities=35% Similarity=0.861 Sum_probs=17.9
Q ss_pred CceeeeccCCCcccccChhh
Q 022209 274 AVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~~ 293 (301)
...||.|.+.||+.++||.-
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTT
T ss_pred CCcccccCCCCeehhhCcCC
Confidence 46799999999999999973
No 230
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=93.28 E-value=0.024 Score=39.15 Aligned_cols=21 Identities=24% Similarity=0.866 Sum_probs=18.1
Q ss_pred CCCceeeeccCCCcccccChh
Q 022209 272 KDAVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 272 ~~~~~C~fc~k~gH~k~~c~~ 292 (301)
+....||.|.+.||+.++||.
T Consensus 4 ~r~~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 4 RKVIRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CCCCBCTTTCCBTCCTTTCCC
T ss_pred CCcCeeeecCCCCcChhhCcC
Confidence 345689999999999999974
No 231
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.03 E-value=0.034 Score=55.22 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=41.7
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHh
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLA 64 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~ 64 (301)
++|+|. .|..+++.+|.+||.+| |+|.++-.-.++ .-||.|||.+.++++.+++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~---g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQF---GPINNHFFYESF--GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGG---SCCCCEEEECSS--SEEEEEECC---CCHHHHSSC
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhc---CCcceEEEEccC--CeEEEEEeCCHHHHHHHHhcc
Confidence 579998 79999999999999999 999987665443 369999999999999776653
No 232
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=92.85 E-value=0.019 Score=41.02 Aligned_cols=19 Identities=42% Similarity=0.934 Sum_probs=0.0
Q ss_pred ceeeeccCCCcccccChhh
Q 022209 275 VNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 275 ~~C~fc~k~gH~k~~c~~~ 293 (301)
..||.|.+.||+.++||.-
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp -------------------
T ss_pred CccccCCCCCcCHhhCcCC
Confidence 3699999999999999874
No 233
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=92.62 E-value=0.031 Score=39.24 Aligned_cols=21 Identities=38% Similarity=1.009 Sum_probs=17.9
Q ss_pred CCCceeeeccCCCcccccChh
Q 022209 272 KDAVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 272 ~~~~~C~fc~k~gH~k~~c~~ 292 (301)
.....||.|.+.||+.++|+.
T Consensus 10 ~~~~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 10 RKTVKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp GGTCBCTTTCCBSSCGGGCSS
T ss_pred CCCcceeeeCCCCcChhhcCC
Confidence 344689999999999999973
No 234
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.41 E-value=0.047 Score=39.61 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=17.2
Q ss_pred CceeeeccCCCcccccChh
Q 022209 274 AVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~ 292 (301)
...||.|.+.||+.++||.
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCS
T ss_pred CCcccccCCCCcChhhCCC
Confidence 4689999999999999984
No 235
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=92.15 E-value=0.05 Score=40.99 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=19.0
Q ss_pred CCCCceeeeccCCCcccccChh
Q 022209 271 NKDAVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 271 ~~~~~~C~fc~k~gH~k~~c~~ 292 (301)
......||.|.+.||+.++|+.
T Consensus 21 ~~r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 21 RSKGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp CSTTSCCTTTCCSSSCTTTCSS
T ss_pred cCCCCcccccCCcCcCcccCCC
Confidence 4456789999999999999994
No 236
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=92.00 E-value=0.05 Score=45.95 Aligned_cols=20 Identities=35% Similarity=0.903 Sum_probs=17.4
Q ss_pred CceeeeccCCCcccccChhh
Q 022209 274 AVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~~ 293 (301)
...||.|++.||+.++||.-
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTT
T ss_pred CCcccccCCcCCEeccCcCC
Confidence 34899999999999999963
No 237
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=91.53 E-value=0.056 Score=41.66 Aligned_cols=22 Identities=27% Similarity=0.761 Sum_probs=19.1
Q ss_pred CCCceeeeccCCCcccccChhh
Q 022209 272 KDAVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 272 ~~~~~C~fc~k~gH~k~~c~~~ 293 (301)
..+..||.|.++||+-++||..
T Consensus 44 ~~~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 44 FHTIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp -CCCBCSSSSCBSSCGGGCSSC
T ss_pred CCCCeecccCCCCcCcccCCcc
Confidence 3568999999999999999974
No 238
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.40 E-value=0.2 Score=40.13 Aligned_cols=53 Identities=8% Similarity=0.181 Sum_probs=42.2
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS 65 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~ 65 (301)
|++=+||....-.||.++|+.| |.| .++=+.| ..|||.|.+++.|..|++.++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~f---ggv-~I~WidD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAF---GNI-QISWIDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTS---EEE-EEEEEET----TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhcc---CCE-EEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 4444999999999999999999 732 2333322 689999999999999999764
No 239
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.06 E-value=0.58 Score=37.58 Aligned_cols=74 Identities=9% Similarity=-0.004 Sum_probs=55.9
Q ss_pred ceEEEeCCCccc-cH----HHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 3 KKISLYGFASHV-SA----RAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 3 ~tI~Vgnlp~~v-ta----~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
.+|.+.|++..+ .. +.++++|..+ +....-....+ =.=..|.|.++++|.+|-..++ +..|+|+.+++
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~---~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh-~~~f~g~~~r~ 78 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTY---DKDTTFQYFKS---FKRVRINFSNPLSAADARLRLH-KTEFLGKEMKL 78 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTT---CSSCEEEEETT---TTEEEEECSSTTHHHHHHHTST-TSEETTEECEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhh---CcCcceeecCc---ceEEEEEeCChHHHHHHHHHhc-cceecCceeEE
Confidence 589999999877 43 4568889898 55544433332 2346899999999999998887 46899999999
Q ss_pred ecCCCC
Q 022209 78 SDAQRR 83 (301)
Q Consensus 78 ~~a~~d 83 (301)
--+...
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 887744
No 240
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=90.52 E-value=0.1 Score=44.05 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=17.7
Q ss_pred CceeeeccCCCcccccChh
Q 022209 274 AVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~ 292 (301)
...||.|.+.||+.++||.
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCS
T ss_pred CCcccEeCCccchhhhCCC
Confidence 6789999999999999986
No 241
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=90.09 E-value=0.27 Score=39.30 Aligned_cols=53 Identities=8% Similarity=0.162 Sum_probs=41.6
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS 65 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~ 65 (301)
|++=+||....-.||.++|+.| |.|. ++=+ .-..|||.|.+++.|..|++.++
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~f---ggv~-I~Wi----dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAF---GNIQ-ISWI----DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTT---CSCC-CEEE----ETTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhcc---CCEE-EEEE----cCCeEEEEecCHHHHHHHHHhcc
Confidence 4444999999999999999999 5221 2222 23789999999999999999763
No 242
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=89.89 E-value=0.098 Score=40.28 Aligned_cols=21 Identities=43% Similarity=0.953 Sum_probs=16.6
Q ss_pred CCceeeeccCCCcccccChhh
Q 022209 273 DAVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 273 ~~~~C~fc~k~gH~k~~c~~~ 293 (301)
+...||.|..+||+.++||.-
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGG
T ss_pred ccCCCCCCCCCCCccccCCCc
Confidence 456899999999999999973
No 243
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=87.23 E-value=0.16 Score=40.93 Aligned_cols=21 Identities=29% Similarity=0.830 Sum_probs=19.0
Q ss_pred CCCceeeeccCCCcccccChh
Q 022209 272 KDAVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 272 ~~~~~C~fc~k~gH~k~~c~~ 292 (301)
...+.||.|.+.||+-+|||+
T Consensus 103 ~~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 103 FHTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCCcCCCCCCCcCcccCcC
Confidence 456899999999999999996
No 244
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=86.81 E-value=0.92 Score=37.88 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=52.5
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEE-EEeec-----------CCC-----CCCeEEEEeCCHHHHHHHHHHhCC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSD-VEVGQ-----------NKG-----SRAHAIVEFTTVKAAELIKCLASV 66 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~-~~V~~-----------dr~-----SRGFaFVqF~s~eaA~~Ai~~~~~ 66 (301)
-|-|.|+|.+.+ ..+-++|+++ |+|.+ ..+.. .+. ....-.|+|+++.+|++|+.. |
T Consensus 9 ~VtVFGFp~~~~-~~VI~~Fs~~---G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~--N 82 (132)
T 3p3d_A 9 AILVFGYPETMA-NQVIAYFQEF---GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE--N 82 (132)
T ss_dssp EEEEECCCGGGH-HHHHHHHGGG---SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT--T
T ss_pred EEEEEecCHHHH-HHHHHHHHhh---ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh--C
Confidence 378999987765 5677889998 98876 22111 011 246779999999999999888 4
Q ss_pred CccccceeEEEecCCC
Q 022209 67 RLSYGNSYLKASDAQR 82 (301)
Q Consensus 67 ~l~~~gr~LkV~~a~~ 82 (301)
+..++|..+=|-+..+
T Consensus 83 G~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TCEETTEECEEEECCH
T ss_pred CeEeCcEEEEEEECCH
Confidence 5788998777776543
No 245
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=86.07 E-value=2.8 Score=32.51 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=49.8
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC----CC-CeEEEEeCCHHHHHHHHHHhCCCccccc
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SR-AHAIVEFTTVKAAELIKCLASVRLSYGN 72 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~----SR-GFaFVqF~s~eaA~~Ai~~~~~~l~~~g 72 (301)
.+|-|-+||.+.|++++.+.+... ..+.-.+-+..+. ++ .-|.|.|.+.|++..-.+..++....+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~---~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM---PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC---CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc---ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 357799999999999999999987 5565455444432 11 5589999999999888888875544443
No 246
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=79.59 E-value=0.65 Score=37.32 Aligned_cols=20 Identities=45% Similarity=0.992 Sum_probs=17.4
Q ss_pred CceeeeccCCCcccccChhh
Q 022209 274 AVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~~ 293 (301)
...||.|.+.||+.++||..
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCS
T ss_pred CccCCCCCcCCcchhhCCCc
Confidence 46899999999999999963
No 247
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=58.84 E-value=16 Score=28.69 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=41.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC----CC-CeEEEEeCCHHHHHHHHHHhCCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SR-AHAIVEFTTVKAAELIKCLASVR 67 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~----SR-GFaFVqF~s~eaA~~Ai~~~~~~ 67 (301)
+-+|-|-.||.+.|++++.+-++..- .+.--.-+..+. ++ .-|.|.|.+.|+...-.+..++.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~---~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLP---AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCS---SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcC---ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 34788999999999999877776652 121111111111 22 45789999999988888887643
No 248
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=57.38 E-value=34 Score=28.02 Aligned_cols=114 Identities=9% Similarity=-0.016 Sum_probs=64.7
Q ss_pred EEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCCCCCCCCCCCCCCCccCCCceEEecccccC
Q 022209 32 VSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISK 111 (301)
Q Consensus 32 V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~di~~~pRp~~~~~r~~~~~~l~~G~~vs~ 111 (301)
|.++-+.. .-.||-||+++..++...++....+-..|-|.+|...++. ++.. +.+....+..|+.+++.=|-+-.-
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV~~fvg~~v~~~Ei~-~il~-~~~~~~~~~~Gd~VrI~~Gpf~g~ 108 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHARGVLPGEVPFKEIE-HFLE-EKPAVSGLEPGDLVEVIAGPFKGQ 108 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTEEEECSSCBCGGGTG-GGCC-CSCTTTTCCTTCEEEECSSTTTTC
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCEEEeCCCCCCHHHHH-HHhC-cCCccccCCCCCEEEEeeecCCCC
Confidence 44544432 2579999999999888888887654333444444333333 1221 211122333333333333321111
Q ss_pred CeeEEEeeccceeeEEecCceeEEEEEEecceeeEEeeeecceeeee
Q 022209 112 DKFSVLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIE 158 (301)
Q Consensus 112 ~~f~v~w~~~~V~~~~~~~~rkl~F~~s~~~~~yKLE~~~e~I~ei~ 158 (301)
.|+=.+++.+.+++...++--+..--+|+.|..|.-+.
T Consensus 109 ---------~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~ 146 (152)
T 3p8b_B 109 ---------KAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLIS 146 (152)
T ss_dssp ---------EEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEE
T ss_pred ---------EEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEec
Confidence 44555677788887777666666667888888887764
No 249
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=54.85 E-value=25 Score=34.74 Aligned_cols=53 Identities=8% Similarity=0.191 Sum_probs=42.5
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS 65 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~ 65 (301)
.++|+ ||......||.+.|+.+ |.| +++-+ +..-|+|.|.+.++|+.|+..++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~f---g~v-~V~wi----ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAF---GNI-QISWI----DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGG---CCC-EEEEC----SSSEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhc---CCE-EEEEE----cCCeEEEEECCHHHHHHHHHHHH
Confidence 35666 99999999999999998 643 33333 44569999999999999999985
No 250
>3rfr_C PMOC; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_C
Probab=44.08 E-value=3.8 Score=37.48 Aligned_cols=12 Identities=50% Similarity=0.960 Sum_probs=10.2
Q ss_pred eeecccCcCCcc
Q 022209 188 VREVDFAPSSSI 199 (301)
Q Consensus 188 iRttDFTps~sI 199 (301)
||.||||||.-|
T Consensus 137 iRDT~FTPSHIi 148 (256)
T 3rfr_C 137 IRDTDFTPSHII 148 (256)
T ss_dssp CCSSSCCHHHHH
T ss_pred eecCCCChHHHH
Confidence 899999999544
No 251
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=43.40 E-value=7.5 Score=29.22 Aligned_cols=27 Identities=22% Similarity=0.651 Sum_probs=23.7
Q ss_pred CCceeeeccCCC---cccccChhhHhHHhh
Q 022209 273 DAVNCFFCKNKG---HMKKACPKYKTWVVK 299 (301)
Q Consensus 273 ~~~~C~fc~k~g---H~k~~c~~~~~~~~k 299 (301)
....|+.|+.+= |---.|..|++|+++
T Consensus 50 ~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 50 HQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred CCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 345799999999 999999999999976
No 252
>1yew_C Particulate methane monooxygenase subunit C2; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_C
Probab=40.40 E-value=4.7 Score=37.38 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=10.8
Q ss_pred eeeecccCcCCcc
Q 022209 187 RVREVDFAPSSSI 199 (301)
Q Consensus 187 WiRttDFTps~sI 199 (301)
=||.||||||.-|
T Consensus 163 viRDT~FTPSHIi 175 (289)
T 1yew_C 163 IVRDTDFTPSHII 175 (289)
T ss_dssp SCCSSSCCHHHHH
T ss_pred eeecCCCChhHHH
Confidence 3999999999654
No 253
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.47 E-value=44 Score=28.82 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=34.6
Q ss_pred eEEEeCCCcc---------ccHHHHHHHH--hcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHH
Q 022209 4 KISLYGFASH---------VSARAVKEFL--EGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAA 57 (301)
Q Consensus 4 tI~Vgnlp~~---------vta~dLk~~F--e~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA 57 (301)
++-|-|+|.. .+..+|++.| ..| ..+...-+.-+...+|+|.|.|++.-+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F---~p~kv~~l~~~~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGF---NPTRVRPLWNYLGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTC---CCSEEEEEECSSBEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCC---CCceeEecccCCCCceeEEEEecCChHH
Confidence 3457788872 4568999988 888 4444333333344889999999987554
No 254
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=26.37 E-value=1.1e+02 Score=21.61 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=41.8
Q ss_pred CccccHHHHHHHHhcCCC--CceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 11 ASHVSARAVKEFLEGHTG--EGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 11 p~~vta~dLk~~Fe~~~g--~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
-..+...+|..++...+| ...|-+++|.. .|.||+-... .|+.+++.+++ ..+.|+.++++.+.
T Consensus 10 k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-----~~s~v~v~~~-~~~~~~~~l~~-~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 10 KKKIRAVDFVGTIAKIDGVSADDIGIITIMD-----NASYVEILNG-KGPHVLKVMKN-TTVKGKQLKVNKAN 75 (76)
T ss_dssp C----CHHHHHHHHTSTTCCGGGEEEEEECS-----SCEEEEECTT-CHHHHHHHHTT-CCC---CCCEEECC
T ss_pred ccCCCHHHHHHHHHHccCCChhhccEEEEeC-----CcEEEEECHH-HHHHHHHHhcc-ccCcCceEEEEECC
Confidence 345677889999988764 44567777753 5899999765 67788888863 46789999888764
No 255
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=24.31 E-value=31 Score=26.39 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=9.4
Q ss_pred CCCCceeeeccCC
Q 022209 271 NKDAVNCFFCKNK 283 (301)
Q Consensus 271 ~~~~~~C~fc~k~ 283 (301)
-....+|.||...
T Consensus 20 L~t~F~CPfCnh~ 32 (85)
T 1wii_A 20 LETQFTCPFCNHE 32 (85)
T ss_dssp CSSCCCCTTTCCS
T ss_pred CCCeEcCCCCCCC
Confidence 3467889999654
No 256
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=21.20 E-value=23 Score=28.10 Aligned_cols=21 Identities=5% Similarity=-0.184 Sum_probs=0.0
Q ss_pred eEEEEeCCHHHHHHHHHHhCC
Q 022209 46 HAIVEFTTVKAAELIKCLASV 66 (301)
Q Consensus 46 FaFVqF~s~eaA~~Ai~~~~~ 66 (301)
|+|.++++...|..|++.+++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g 26 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTG 26 (135)
T ss_dssp ---------------------
T ss_pred cccccccCCCchhhhhhhccC
Confidence 678888899999999998874
No 257
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=21.11 E-value=1.6e+02 Score=18.34 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=40.9
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCC---HHHHHHHHHHh
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTT---VKAAELIKCLA 64 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s---~eaA~~Ai~~~ 64 (301)
|..++.|.|+.-..-+..+++-++.. ..|..+.+-.. .+-+.|+++. .+.-..+++.+
T Consensus 1 ~~~~~~v~gm~C~~C~~~i~~~l~~~---~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 1 MKATFQVPSITCNHCVDKIEKFVGEI---EGVSFIDVSVE---KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp CEEEECCTTCSCSHHHHHHHHHHTTS---SSEEEEEEETT---TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCcccHHHHHHHHHHHhcC---CCceEEEEEcC---CCEEEEEECCCCCHHHHHHHHHHc
Confidence 66678899999888899999999997 44666666543 3667788763 34444555554
No 258
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.36 E-value=32 Score=30.58 Aligned_cols=29 Identities=7% Similarity=0.125 Sum_probs=23.0
Q ss_pred EEeCCCccccHHHHHHHHhcCCCCceEEEEEe
Q 022209 6 SLYGFASHVSARAVKEFLEGHTGEGTVSDVEV 37 (301)
Q Consensus 6 ~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V 37 (301)
-|+|+||.++..-|..+++.. +.+..+-+
T Consensus 100 vv~NlPY~is~~il~~ll~~~---~~~~~~~l 128 (255)
T 3tqs_A 100 VVGNLPYNISTPLLFHLFSQI---HCIEDMHF 128 (255)
T ss_dssp EEEECCHHHHHHHHHHHHHTG---GGEEEEEE
T ss_pred EEecCCcccCHHHHHHHHhCC---CChheEEE
Confidence 599999999999999999975 45544433
Done!