BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022210
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 151 DFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTL 210
DF P+ V V+V +RP++ FL+ + +F+ V+FTA + YA + D+LD
Sbjct: 38 DFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGA 96
Query: 211 IGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSD 270
R++R+SCVF G Y+KDL+ LGRDL R+ I+DN+P + DN +P+ SWF + SD
Sbjct: 97 FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSD 156
Query: 271 SALLSLLMFLETLVGADDVRPIIKQ 295
+ L LL F E L DDV +++Q
Sbjct: 157 TELHDLLPFFEQLSRVDDVYSVLRQ 181
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 151 DFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTL 210
DF P+ V V+V +RP++ FL+ + +F+ V+FTA + YA + D+LD
Sbjct: 38 DFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGA 96
Query: 211 IGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSD 270
R++R+SCVF G Y+KDL+ LGRDL R+ I+DN+P + DN +P+ SWF + SD
Sbjct: 97 FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSD 156
Query: 271 SALLSLLMFLETLVGADDVRPIIKQ 295
+ L LL F E L DDV +++Q
Sbjct: 157 TELHDLLPFFEQLSRVDDVYSVLRQ 181
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 151 DFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTL 210
DF P+ V V+V +RP++ FL+ + +F+ V+FTA + YA + D+LD
Sbjct: 41 DFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGA 99
Query: 211 IGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSD 270
R++R+SCVF G Y+KDL+ LGRDL R+ I+DN+P + DN +P+ SWF + SD
Sbjct: 100 FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSD 159
Query: 271 SALLSLLMFLETLVGADDVRPIIKQ 295
+ L LL F E L DDV +++Q
Sbjct: 160 TELHDLLPFFEQLSRVDDVYSVLRQ 184
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 151 DFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTL 210
DF P+ V V+V +RP++ FL+ + +F+ V+FTA + YA + D+LD
Sbjct: 37 DFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGA 95
Query: 211 IGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSD 270
R++R+SCVF G Y+KDL+ LGRDL R+ I+DN+P + DN +P+ SWF + SD
Sbjct: 96 FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSD 155
Query: 271 SALLSLLMFLETLVGADDVRPIIKQ 295
+ L LL F E L DDV +++Q
Sbjct: 156 TELHDLLPFFEQLSRVDDVYSVLRQ 180
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 15/167 (8%)
Query: 143 ITLVLDLD--------------DFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVI 188
I +V+DLD DF P+ V V+V +RP++ FL+ +F+ V+
Sbjct: 16 ICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRXGELFECVL 75
Query: 189 FTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTP 248
FTA + YA + D LD R++R+SCVF G Y+KDL+ LGRDL R+ I DN+P
Sbjct: 76 FTASLAKYADPVADXLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLIXDNSP 134
Query: 249 QVFQLQVDNGIPIESWFGDPSDSALLSLLMFLETLVGADDVRPIIKQ 295
+ DN +P+ SWF + SD+ L LL F E L DDV +++Q
Sbjct: 135 ASYVFHPDNAVPVASWFDNXSDTELHDLLPFFEQLSRVDDVYSVLRQ 181
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 15/161 (9%)
Query: 143 ITLVLDLD--------------DFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVI 188
I +V+DLD DF PI + V+V +RPY+ FL + +F+ V+
Sbjct: 18 ICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVL 77
Query: 189 FTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTP 248
FTA + YA + D+LD + R++R+SCVF G Y+KDL+ LGRDL + I+DN+P
Sbjct: 78 FTASLAKYADPVTDLLD-RCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSP 136
Query: 249 QVFQLQVDNGIPIESWFGDPSDSALLSLLMFLETLVGADDV 289
+ +N +P++SWF D +D+ LL+L+ E L GA+DV
Sbjct: 137 ASYIFHPENAVPVQSWFDDMADTELLNLIPIFEELSGAEDV 177
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 151 DFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTL 210
DF P+ V V+V +RP++ FL+ + +F+ V+FTA + YA + D+LD
Sbjct: 41 DFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGA 99
Query: 211 IGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSD 270
R++R+SCVF G Y+KDL+ LGRDL R+ I+ N+P + DN +P+ SWF + SD
Sbjct: 100 FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILANSPASYVFHPDNAVPVASWFDNMSD 159
Query: 271 SALLSLLMFLETLVGADDVRPIIKQ 295
+ L LL F E L DDV +++Q
Sbjct: 160 TELHDLLPFFEQLSRVDDVYSVLRQ 184
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 151 DFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTL 210
DF P+ V V+V +RP++ FL+ + +F+ V+FTA + YA + D+LD
Sbjct: 41 DFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGA 99
Query: 211 IGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSD 270
R++R+SCVF G Y+KDL+ LGRDL R+ I+ N+P + DN +P+ SWF + SD
Sbjct: 100 FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILANSPASYVFHPDNAVPVASWFDNMSD 159
Query: 271 SALLSLLMFLETLVGADDVRPIIKQ 295
+ L LL F E L DDV +++Q
Sbjct: 160 TELHDLLPFFEQLSRVDDVYSVLRQ 184
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 151 DFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTL 210
DF P+ + V+V +RP++ FL+ + +F+ V+FTA + YA + D+LD +
Sbjct: 51 DFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLD-RWGV 109
Query: 211 IGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSD 270
R++R+SCVF G Y+KDL+ LGR+L+++ IVDN+P + +N +P++SWF D +D
Sbjct: 110 FRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTD 169
Query: 271 SALLSLLMFLETLVGADD 288
+ LL L+ F E L DD
Sbjct: 170 TELLDLIPFFEGLSREDD 187
>pdb|3QLE|A Chain A, Structural Basis For The Function Of Tim50 In The
Mitochondrial Presequence Translocase
Length = 204
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 94/153 (61%), Gaps = 6/153 (3%)
Query: 144 TLVLDLDDFSFPIHSKMEVQTVF-VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLD 202
TLV+ L+DF +HS+ + + +RP FL ++ +++V+F++ +Y+ ++ +
Sbjct: 36 TLVITLEDFL--VHSEWSQKHGWRTAKRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAE 93
Query: 203 ILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIE 262
LDP + ++++ CV+ DG ++KDL+ L RDL+++ I+D P ++LQ +N IP+E
Sbjct: 94 KLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPME 153
Query: 263 SWFGDPSDSALLSLLMFLETLVG--ADDVRPII 293
W G+ +D L+ L+ FLE L DVRPI+
Sbjct: 154 PWNGE-ADDKLVRLIPFLEYLATQQTKDVRPIL 185
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 166 FVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRV 215
+++ RP L FL+ ++ ++++ I+T G YA ++ I+DP L RV
Sbjct: 81 YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRV 130
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 166 FVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRV 215
+++ RP L FL+ ++ ++++ I+T G YA ++ I+DP L RV
Sbjct: 73 YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRV 122
>pdb|3SHQ|A Chain A, Crystal Structure Of Ublcp1
Length = 320
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 145 LVLDLDDFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDIL 204
LVLD+D F S E T +R PYLH FL + +D+VI++A + + + +L
Sbjct: 143 LVLDIDYTLFDHRSPAETGTELMR--PYLHEFLTSAYEDYDIVIWSATSMRWIEEKMRLL 200
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 102 GXLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 155
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GXLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A+G YL+D ++ RDLA ++ TPQ
Sbjct: 98 GCLLDYVREHKDNIGSQYLLNWCVQIAEGMNYLEDRRLVHRDLAARNVLVKTPQ 151
>pdb|4IZJ|D Chain D, Crystal Structure Of Yellowtail Ascites Virus Vp4 Protease
With A Wild-type Active Site Reveals Acyl-enzyme
Complexes And Product Complexes
Length = 210
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 171 PYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKD 230
P +H A F ++ I G ++LDPNQ ++ CV+ GE D
Sbjct: 38 PVVHTVESAPGEAFGSLLV-----IIPGAYPELLDPNQQVLSHFKNDTGCVWGIGE---D 89
Query: 231 LTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPS 269
+ G D+ A+ + +++ D I +E F P+
Sbjct: 90 IPFEGDDICYTAL-----PLKEIKKDGNIVVEKVFAGPA 123
>pdb|4IZJ|B Chain B, Crystal Structure Of Yellowtail Ascites Virus Vp4 Protease
With A Wild-type Active Site Reveals Acyl-enzyme
Complexes And Product Complexes.
pdb|4IZJ|C Chain C, Crystal Structure Of Yellowtail Ascites Virus Vp4 Protease
With A Wild-type Active Site Reveals Acyl-enzyme
Complexes And Product Complexes
Length = 210
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 171 PYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKD 230
P +H A F ++ I G ++LDPNQ ++ CV+ GE D
Sbjct: 38 PVVHTVESAPGEAFGSLLV-----IIPGAYPELLDPNQQVLSHFKNDTGCVWGIGE---D 89
Query: 231 LTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPS 269
+ G D+ A+ + +++ D I +E F P+
Sbjct: 90 IPFEGDDICYTAL-----PLKEIKKDGNIVVEKVFAGPA 123
>pdb|3R0B|D Chain D, Crystal Structure Of Yellowtail Ascites Virus Vp4 Protease
With A Wild-Type Active Site Reveals Acyl-Enzyme
Complexes And Product Complexes
Length = 218
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 171 PYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKD 230
P +H A F ++ I G ++LDPNQ ++ CV+ GE D
Sbjct: 38 PVVHTVESAPGEAFGSLLV-----IIPGAYPELLDPNQQVLSHFKNDTGCVWGIGE---D 89
Query: 231 LTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPS 269
+ G D+ A+ + +++ D I +E F P+
Sbjct: 90 IPFEGDDICYTAL-----PLKEIKKDGNIVVEKVFAGPA 123
>pdb|3R0B|B Chain B, Crystal Structure Of Yellowtail Ascites Virus Vp4 Protease
With A Wild-Type Active Site Reveals Acyl-Enzyme
Complexes And Product Complexes.
pdb|3R0B|C Chain C, Crystal Structure Of Yellowtail Ascites Virus Vp4 Protease
With A Wild-Type Active Site Reveals Acyl-Enzyme
Complexes And Product Complexes
Length = 218
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 171 PYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKD 230
P +H A F ++ I G ++LDPNQ ++ CV+ GE D
Sbjct: 38 PVVHTVESAPGEAFGSLLV-----IIPGAYPELLDPNQQVLSHFKNDTGCVWGIGE---D 89
Query: 231 LTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPS 269
+ G D+ A+ + +++ D I +E F P+
Sbjct: 90 IPFEGDDICYTAL-----PLKEIKKDGNIVVEKVFAGPA 123
>pdb|2O0T|A Chain A, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|B Chain B, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|C Chain C, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|D Chain D, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
Length = 467
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 15/52 (28%)
Query: 116 MGWQNLPQIAPSYWPRTPLREP-----IAGLPIT----------LVLDLDDF 152
M L +AP+ WPR R+ IAG+P+T V+D DDF
Sbjct: 1 MAVNELLHLAPNVWPRNTTRDEVGVVCIAGIPLTQLAQEYGTPLFVIDEDDF 52
>pdb|4IZJ|A Chain A, Crystal Structure Of Yellowtail Ascites Virus Vp4 Protease
With A Wild-type Active Site Reveals Acyl-enzyme
Complexes And Product Complexes.
pdb|4IZJ|E Chain E, Crystal Structure Of Yellowtail Ascites Virus Vp4 Protease
With A Wild-type Active Site Reveals Acyl-enzyme
Complexes And Product Complexes
Length = 210
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 171 PYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKD 230
P +H A F ++ I G ++LDPNQ ++ CV+ GE D
Sbjct: 38 PVVHTVESAPGEAFGSLLV-----IIPGAYPELLDPNQQVLSHFKNDTGCVWGIGE---D 89
Query: 231 LTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPS 269
+ G D+ A+ + +++ D I +E F P+
Sbjct: 90 IPFEGDDICYTAL-----PLKEIKKDGNIVVEKVFAGPA 123
>pdb|3R0B|A Chain A, Crystal Structure Of Yellowtail Ascites Virus Vp4 Protease
With A Wild-Type Active Site Reveals Acyl-Enzyme
Complexes And Product Complexes.
pdb|3R0B|E Chain E, Crystal Structure Of Yellowtail Ascites Virus Vp4 Protease
With A Wild-Type Active Site Reveals Acyl-Enzyme
Complexes And Product Complexes
Length = 218
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 171 PYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKD 230
P +H A F ++ I G ++LDPNQ ++ CV+ GE D
Sbjct: 38 PVVHTVESAPGEAFGSLLV-----IIPGAYPELLDPNQQVLSHFKNDTGCVWGIGE---D 89
Query: 231 LTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPS 269
+ G D+ A+ + +++ D I +E F P+
Sbjct: 90 IPFEGDDICYTAL-----PLKEIKKDGNIVVEKVFAGPA 123
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 107 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 160
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 95 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 148
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 105 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 158
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 103 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 156
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 102 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 155
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 104 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 157
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 108 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 161
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|3BWQ|A Chain A, Structure Of Free Sv40 Vp1 Pentamer
pdb|3BWQ|B Chain B, Structure Of Free Sv40 Vp1 Pentamer
pdb|3BWQ|C Chain C, Structure Of Free Sv40 Vp1 Pentamer
pdb|3BWQ|D Chain D, Structure Of Free Sv40 Vp1 Pentamer
pdb|3BWQ|E Chain E, Structure Of Free Sv40 Vp1 Pentamer
pdb|3BWR|A Chain A, Sv40 Vp1 Pentamer In Complex With Gm1 Oligosaccharide
pdb|3BWR|B Chain B, Sv40 Vp1 Pentamer In Complex With Gm1 Oligosaccharide
pdb|3BWR|C Chain C, Sv40 Vp1 Pentamer In Complex With Gm1 Oligosaccharide
pdb|3BWR|D Chain D, Sv40 Vp1 Pentamer In Complex With Gm1 Oligosaccharide
pdb|3BWR|E Chain E, Sv40 Vp1 Pentamer In Complex With Gm1 Oligosaccharide
Length = 272
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 246 NTPQVFQLQVDNGIPIESWFGDPSDSALLSLLMFLETLVGADDVRPII 293
NT L DN P+E W DPS + + T G ++V P++
Sbjct: 165 NTDHKAVLDKDNAYPVECWVPDPSKN---ENTRYFGTYTGGENVPPVL 209
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 103 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 156
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 103 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 156
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 104 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 157
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 103 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 156
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 105 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 158
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 111 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 164
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 108 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 161
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 108 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 161
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 104 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 157
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 103 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 156
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 126 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 179
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 104 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 157
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 108 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 161
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 198 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 249
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 135 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 188
>pdb|3NXD|C Chain C, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|B Chain B, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|A Chain A, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|D Chain D, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|E Chain E, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXG|A Chain A, Jc Polyomavirus Vp1
pdb|3NXG|B Chain B, Jc Polyomavirus Vp1
pdb|3NXG|C Chain C, Jc Polyomavirus Vp1
pdb|3NXG|D Chain D, Jc Polyomavirus Vp1
pdb|3NXG|E Chain E, Jc Polyomavirus Vp1
Length = 272
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 230 DLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSDSALLSLLMFLETLVGADDV 289
D TI ++ + V NT L + P+E W DP+ + + TL G ++V
Sbjct: 149 DGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRN---ENTRYFGTLTGGENV 205
Query: 290 RPII 293
P++
Sbjct: 206 PPVL 209
>pdb|1SVA|1 Chain 1, Simian Virus 40
pdb|1SVA|2 Chain 2, Simian Virus 40
pdb|1SVA|3 Chain 3, Simian Virus 40
pdb|1SVA|4 Chain 4, Simian Virus 40
pdb|1SVA|5 Chain 5, Simian Virus 40
pdb|1SVA|6 Chain 6, Simian Virus 40
Length = 361
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 246 NTPQVFQLQVDNGIPIESWFGDPSDSALLSLLMFLETLVGADDVRPII 293
NT L DN P+E W DPS + + T G ++V P++
Sbjct: 190 NTDHKAVLDKDNAYPVECWVPDPSKN---ENTRYFGTYTGGENVPPVL 234
>pdb|1HKV|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKV|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 15/49 (30%)
Query: 119 QNLPQIAPSYWPRTPLREP-----IAGLPIT----------LVLDLDDF 152
L +AP+ WPR R+ IAG+P+T V+D DDF
Sbjct: 2 NELLHLAPNVWPRNTTRDEVGVVCIAGIPLTQLAQEYGTPLFVIDEDDF 50
>pdb|1HKW|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKW|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 15/49 (30%)
Query: 119 QNLPQIAPSYWPRTPLREP-----IAGLPIT----------LVLDLDDF 152
L +AP+ WPR R+ IAG+P+T V+D DDF
Sbjct: 2 NELLHLAPNVWPRNTTRDEVGVVCIAGIPLTQLAQEYGTPLFVIDEDDF 50
>pdb|1SFR|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Antigen 85a Protein
pdb|1SFR|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Antigen 85a Protein
pdb|1SFR|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
Antigen 85a Protein
Length = 304
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 179 AVASMFDVVIFTAGQSIYAGQLLDILDPNQ----TLIG 212
A +S + I+ Q +YAG + +LDP+Q TLIG
Sbjct: 129 AASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIG 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,386,803
Number of Sequences: 62578
Number of extensions: 409208
Number of successful extensions: 802
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 55
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)