Query 022213
Match_columns 301
No_of_seqs 172 out of 1862
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:52:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0259 Tyrosine aminotransfer 100.0 1.1E-52 2.4E-57 359.1 27.8 294 7-300 26-319 (447)
2 PLN02187 rooty/superroot1 100.0 2.6E-49 5.7E-54 367.3 29.9 295 3-300 27-324 (462)
3 COG0436 Aspartate/tyrosine/aro 100.0 3E-49 6.5E-54 358.5 27.2 247 42-300 28-278 (393)
4 PLN00145 tyrosine/nicotianamin 100.0 9.3E-49 2E-53 361.2 30.3 295 6-300 14-310 (430)
5 PLN00143 tyrosine/nicotianamin 100.0 1.8E-46 3.8E-51 344.5 29.8 276 25-300 15-290 (409)
6 PLN02656 tyrosine transaminase 100.0 3.9E-46 8.5E-51 342.3 29.1 276 25-300 13-289 (409)
7 PRK13355 bifunctional HTH-doma 100.0 2.3E-45 4.9E-50 346.2 27.9 285 9-300 115-399 (517)
8 PLN02368 alanine transaminase 100.0 8.3E-45 1.8E-49 331.4 24.7 282 12-300 10-335 (407)
9 KOG0257 Kynurenine aminotransf 100.0 2.4E-44 5.1E-49 312.9 22.1 242 47-300 36-286 (420)
10 PTZ00433 tyrosine aminotransfe 100.0 2.1E-43 4.6E-48 324.6 29.9 287 8-300 3-295 (412)
11 PRK06855 aminotransferase; Val 100.0 1.8E-43 3.8E-48 326.7 26.9 259 40-300 30-291 (433)
12 PLN00175 aminotransferase fami 100.0 6.2E-43 1.3E-47 321.2 28.2 266 13-300 32-300 (413)
13 TIGR01264 tyr_amTase_E tyrosin 100.0 8.4E-43 1.8E-47 319.8 29.0 286 9-300 1-286 (401)
14 PRK07366 succinyldiaminopimela 100.0 7.2E-43 1.6E-47 319.0 26.6 236 40-287 28-266 (388)
15 PRK08068 transaminase; Reviewe 100.0 1.8E-42 3.8E-47 316.5 28.3 272 14-299 6-280 (389)
16 PRK07681 aspartate aminotransf 100.0 1.8E-42 3.9E-47 317.3 28.4 271 15-300 7-280 (399)
17 PRK06207 aspartate aminotransf 100.0 1.4E-42 3.1E-47 318.3 27.6 270 20-300 16-292 (405)
18 TIGR01265 tyr_nico_aTase tyros 100.0 2.2E-42 4.8E-47 317.1 28.7 276 22-300 13-288 (403)
19 PRK05942 aspartate aminotransf 100.0 2.3E-42 4.9E-47 316.2 27.8 281 5-300 1-284 (394)
20 PRK09147 succinyldiaminopimela 100.0 1.7E-42 3.8E-47 317.2 26.3 268 17-299 5-285 (396)
21 PRK08636 aspartate aminotransf 100.0 3.5E-42 7.7E-47 315.8 27.4 276 10-299 3-288 (403)
22 PRK08960 hypothetical protein; 100.0 4.8E-42 1E-46 313.4 27.9 269 14-300 6-275 (387)
23 PTZ00377 alanine aminotransfer 100.0 3.2E-42 7E-47 322.3 26.6 284 12-300 9-343 (481)
24 TIGR03540 DapC_direct LL-diami 100.0 8.2E-42 1.8E-46 311.5 28.3 249 40-300 27-278 (383)
25 PRK09276 LL-diaminopimelate am 100.0 8.8E-42 1.9E-46 311.6 28.5 248 40-299 29-279 (385)
26 PRK06290 aspartate aminotransf 100.0 6.4E-42 1.4E-46 313.9 27.5 246 40-299 42-291 (410)
27 PRK09265 aminotransferase AlaT 100.0 1E-41 2.3E-46 312.8 28.5 280 14-300 7-286 (404)
28 PRK06348 aspartate aminotransf 100.0 1.5E-41 3.3E-46 309.7 27.7 266 15-300 8-275 (384)
29 PRK09148 aminotransferase; Val 100.0 1.8E-41 3.8E-46 311.2 28.0 272 15-300 5-279 (405)
30 TIGR03538 DapC_gpp succinyldia 100.0 2.9E-41 6.4E-46 308.8 25.3 266 19-299 6-284 (393)
31 PRK12414 putative aminotransfe 100.0 7.2E-41 1.6E-45 305.2 27.8 246 41-300 28-276 (384)
32 PLN02231 alanine transaminase 100.0 7E-41 1.5E-45 314.4 26.5 265 17-299 111-394 (534)
33 PRK07550 hypothetical protein; 100.0 2.5E-40 5.5E-45 302.0 28.3 272 15-300 4-277 (386)
34 PRK09257 aromatic amino acid a 100.0 3.7E-41 8.1E-46 308.4 22.0 277 17-300 5-294 (396)
35 PRK07337 aminotransferase; Val 100.0 2E-40 4.2E-45 303.0 26.7 268 15-300 5-273 (388)
36 PRK07683 aminotransferase A; V 100.0 6.3E-40 1.4E-44 299.3 28.5 266 14-300 6-274 (387)
37 PRK07682 hypothetical protein; 100.0 2.6E-40 5.7E-45 301.1 25.9 245 42-300 20-267 (378)
38 PRK07590 L,L-diaminopimelate a 100.0 2.4E-40 5.1E-45 304.2 25.6 231 27-268 19-265 (409)
39 PRK08363 alanine aminotransfer 100.0 5.6E-40 1.2E-44 300.9 27.5 252 40-300 28-283 (398)
40 PRK06107 aspartate aminotransf 100.0 4.8E-40 1E-44 301.6 27.0 248 40-300 31-282 (402)
41 PRK05839 hypothetical protein; 100.0 4E-40 8.6E-45 299.3 26.0 242 41-300 23-273 (374)
42 PRK08912 hypothetical protein; 100.0 8.6E-40 1.9E-44 298.6 27.3 262 17-299 8-272 (387)
43 PRK08361 aspartate aminotransf 100.0 5.7E-40 1.2E-44 300.2 25.6 266 14-299 11-277 (391)
44 PRK06108 aspartate aminotransf 100.0 1.3E-39 2.8E-44 297.0 27.7 262 19-299 7-272 (382)
45 TIGR03537 DapC succinyldiamino 100.0 6.7E-40 1.5E-44 295.4 24.6 241 43-299 1-246 (350)
46 PRK05957 aspartate aminotransf 100.0 3.4E-39 7.5E-44 294.7 28.9 245 42-300 27-274 (389)
47 COG1167 ARO8 Transcriptional r 100.0 3.8E-40 8.3E-45 305.1 22.6 246 41-300 88-339 (459)
48 PTZ00376 aspartate aminotransf 100.0 3E-40 6.5E-45 303.0 21.6 278 17-300 8-299 (404)
49 PRK07309 aromatic amino acid a 100.0 3.7E-39 8E-44 294.7 28.1 265 15-300 9-278 (391)
50 PRK07777 aminotransferase; Val 100.0 4.2E-39 9.2E-44 294.1 28.0 263 17-299 6-272 (387)
51 PRK07568 aspartate aminotransf 100.0 4.4E-39 9.6E-44 294.9 28.1 270 15-300 5-276 (397)
52 PRK05764 aspartate aminotransf 100.0 3.7E-39 8E-44 295.1 27.4 272 13-299 4-278 (393)
53 PRK09082 methionine aminotrans 100.0 1.9E-39 4.2E-44 296.1 25.0 246 41-300 29-277 (386)
54 PLN02450 1-aminocyclopropane-1 100.0 3.2E-40 6.9E-45 307.0 19.9 247 41-300 37-312 (468)
55 PRK07324 transaminase; Validat 100.0 8.9E-40 1.9E-44 296.8 22.2 239 39-299 23-262 (373)
56 PLN02376 1-aminocyclopropane-1 100.0 3.2E-39 6.9E-44 301.5 22.6 250 41-300 45-319 (496)
57 PLN02607 1-aminocyclopropane-1 100.0 2.8E-39 6.1E-44 298.7 20.9 248 40-300 45-319 (447)
58 PRK08175 aminotransferase; Val 100.0 2.2E-38 4.7E-43 290.0 26.3 245 40-299 27-277 (395)
59 PRK09275 aspartate aminotransf 100.0 1.1E-38 2.4E-43 296.2 22.6 215 43-269 101-328 (527)
60 PRK01533 histidinol-phosphate 100.0 6.4E-39 1.4E-43 290.2 19.0 234 41-300 28-261 (366)
61 TIGR03542 DAPAT_plant LL-diami 100.0 6.3E-38 1.4E-42 287.5 24.2 216 40-268 31-262 (402)
62 PRK02610 histidinol-phosphate 100.0 7.3E-38 1.6E-42 284.5 21.7 237 43-300 29-273 (374)
63 PRK06836 aspartate aminotransf 100.0 6.8E-37 1.5E-41 280.0 28.0 221 41-268 32-260 (394)
64 PLN02397 aspartate transaminas 100.0 3E-37 6.5E-42 284.2 25.0 276 17-300 27-317 (423)
65 PRK07865 N-succinyldiaminopime 100.0 4.5E-37 9.8E-42 278.5 24.8 234 40-300 25-264 (364)
66 PRK06358 threonine-phosphate d 100.0 1.4E-37 3E-42 280.6 21.3 235 41-299 18-252 (354)
67 PRK14809 histidinol-phosphate 100.0 2.2E-37 4.7E-42 279.8 21.1 233 40-299 28-260 (357)
68 PRK15481 transcriptional regul 100.0 2.9E-37 6.4E-42 285.6 22.0 236 41-300 84-322 (431)
69 PF00155 Aminotran_1_2: Aminot 100.0 6.3E-38 1.4E-42 283.9 16.8 248 43-299 2-259 (363)
70 TIGR03539 DapC_actino succinyl 100.0 2.6E-36 5.6E-41 272.8 25.6 251 21-300 2-258 (357)
71 TIGR03801 asp_4_decarbox aspar 100.0 8.6E-37 1.9E-41 283.2 22.9 214 43-268 95-326 (521)
72 PRK03317 histidinol-phosphate 100.0 3.6E-37 7.7E-42 279.6 18.9 237 43-299 27-266 (368)
73 PLN02672 methionine S-methyltr 100.0 1.5E-36 3.2E-41 297.9 23.3 261 10-286 661-937 (1082)
74 PRK03158 histidinol-phosphate 100.0 5.2E-37 1.1E-41 277.6 18.6 234 41-300 28-261 (359)
75 PRK05166 histidinol-phosphate 100.0 6E-37 1.3E-41 278.3 19.1 235 41-299 35-270 (371)
76 COG1168 MalY Bifunctional PLP- 100.0 4.9E-36 1.1E-40 258.6 22.8 223 41-270 24-250 (388)
77 PRK09440 avtA valine--pyruvate 100.0 6E-36 1.3E-40 275.8 23.5 244 41-300 29-289 (416)
78 PRK08056 threonine-phosphate d 100.0 2.3E-36 4.9E-41 273.0 20.1 234 40-299 18-251 (356)
79 PRK06225 aspartate aminotransf 100.0 1.3E-35 2.9E-40 270.4 24.6 237 41-299 27-264 (380)
80 PRK09105 putative aminotransfe 100.0 7.9E-36 1.7E-40 270.5 20.4 229 41-299 42-270 (370)
81 PRK08637 hypothetical protein; 100.0 5.6E-35 1.2E-39 266.9 24.4 250 43-300 4-278 (388)
82 COG0079 HisC Histidinol-phosph 100.0 2.6E-35 5.6E-40 263.2 21.6 229 42-299 22-250 (356)
83 PRK07392 threonine-phosphate d 100.0 2E-35 4.4E-40 267.3 21.2 233 40-300 20-255 (360)
84 PRK08153 histidinol-phosphate 100.0 2.6E-35 5.7E-40 267.2 21.3 230 42-300 32-262 (369)
85 PRK03321 putative aminotransfe 100.0 8E-36 1.7E-40 269.2 17.1 233 42-299 22-254 (352)
86 PLN03026 histidinol-phosphate 100.0 1.9E-35 4.2E-40 269.0 19.6 227 41-299 51-278 (380)
87 PRK04870 histidinol-phosphate 100.0 1.9E-35 4.1E-40 267.1 19.1 229 41-299 25-255 (356)
88 PRK14807 histidinol-phosphate 100.0 7.3E-35 1.6E-39 262.7 21.6 231 41-300 21-252 (351)
89 PRK05387 histidinol-phosphate 100.0 3.2E-35 6.9E-40 265.3 18.8 228 41-300 23-252 (353)
90 PRK02731 histidinol-phosphate 100.0 6.8E-35 1.5E-39 264.6 20.2 234 40-299 30-263 (367)
91 PRK03967 histidinol-phosphate 100.0 1.6E-34 3.5E-39 259.0 20.8 227 41-300 17-243 (337)
92 PRK14808 histidinol-phosphate 100.0 2.7E-34 5.8E-39 257.2 20.2 224 40-299 17-240 (335)
93 TIGR01141 hisC histidinol-phos 100.0 8.9E-34 1.9E-38 255.2 18.6 231 41-299 18-248 (346)
94 PRK08354 putative aminotransfe 100.0 5.9E-33 1.3E-37 246.2 22.5 190 41-266 7-196 (311)
95 PRK05664 threonine-phosphate d 100.0 5.9E-33 1.3E-37 248.2 20.5 211 42-299 20-230 (330)
96 PRK01688 histidinol-phosphate 100.0 1.3E-33 2.9E-38 254.4 15.4 223 42-299 28-251 (351)
97 PRK04781 histidinol-phosphate 100.0 4.2E-33 9.2E-38 252.3 17.8 203 77-299 53-258 (364)
98 PRK00950 histidinol-phosphate 100.0 7.9E-33 1.7E-37 250.5 19.1 228 41-299 33-261 (361)
99 PRK07908 hypothetical protein; 100.0 4.8E-32 1E-36 244.3 22.6 221 41-298 21-241 (349)
100 KOG0256 1-aminocyclopropane-1- 100.0 7.8E-33 1.7E-37 239.4 16.2 216 77-300 114-343 (471)
101 PRK06425 histidinol-phosphate 100.0 2.3E-32 4.9E-37 244.6 17.8 204 43-287 17-220 (332)
102 PRK06959 putative threonine-ph 100.0 4.3E-32 9.3E-37 243.3 19.1 212 42-300 24-237 (339)
103 PRK04635 histidinol-phosphate 100.0 1.3E-32 2.7E-37 248.5 15.3 220 42-298 31-251 (354)
104 TIGR01140 L_thr_O3P_dcar L-thr 100.0 3.6E-31 7.9E-36 236.7 19.6 218 40-300 15-233 (330)
105 KOG0634 Aromatic amino acid am 100.0 7.3E-31 1.6E-35 228.9 16.7 276 7-300 6-335 (472)
106 KOG0258 Alanine aminotransfera 100.0 8.3E-30 1.8E-34 219.2 19.1 276 20-300 23-340 (475)
107 cd00609 AAT_like Aspartate ami 100.0 5.3E-28 1.1E-32 217.2 24.3 244 45-299 1-245 (350)
108 PRK13238 tnaA tryptophanase/L- 100.0 1.9E-28 4.1E-33 226.7 18.7 246 14-285 10-284 (460)
109 COG3977 Alanine-alpha-ketoisov 100.0 1.8E-26 3.8E-31 192.8 19.5 259 18-298 9-287 (417)
110 COG1448 TyrB Aspartate/tyrosin 99.9 5E-26 1.1E-30 196.8 17.0 277 15-296 3-290 (396)
111 TIGR01822 2am3keto_CoA 2-amino 99.9 1.5E-24 3.2E-29 198.6 22.8 214 40-285 36-263 (393)
112 cd00617 Tnase_like Tryptophana 99.9 5.6E-25 1.2E-29 201.1 18.2 222 40-285 9-259 (431)
113 PRK06939 2-amino-3-ketobutyrat 99.9 6E-24 1.3E-28 194.7 21.2 220 39-285 39-267 (397)
114 TIGR01825 gly_Cac_T_rel pyrido 99.9 1.8E-23 3.9E-28 190.9 21.2 219 39-285 30-255 (385)
115 PRK07049 methionine gamma-lyas 99.9 1.7E-23 3.7E-28 192.4 20.3 192 77-299 77-282 (427)
116 TIGR00858 bioF 8-amino-7-oxono 99.9 4.9E-23 1.1E-27 186.1 21.8 215 39-285 13-239 (360)
117 cd06452 SepCysS Sep-tRNA:Cys-t 99.9 6.2E-23 1.3E-27 185.8 21.1 202 58-286 11-226 (361)
118 KOG0633 Histidinol phosphate a 99.9 3.9E-24 8.4E-29 175.6 9.9 201 41-268 40-243 (375)
119 TIGR03392 FeS_syn_CsdA cystein 99.9 2E-22 4.3E-27 184.8 22.0 202 42-268 15-233 (398)
120 PLN02242 methionine gamma-lyas 99.9 7.5E-23 1.6E-27 187.6 18.3 179 85-298 77-265 (418)
121 TIGR03576 pyridox_MJ0158 pyrid 99.9 3.4E-22 7.4E-27 179.2 21.6 206 58-299 32-242 (346)
122 cd06502 TA_like Low-specificit 99.9 6.1E-23 1.3E-27 184.1 16.5 203 58-286 8-220 (338)
123 PRK05958 8-amino-7-oxononanoat 99.9 3.1E-22 6.8E-27 182.6 21.4 217 40-284 37-260 (385)
124 PRK06234 methionine gamma-lyas 99.9 1.5E-22 3.3E-27 185.1 18.9 169 82-284 62-237 (400)
125 PRK10874 cysteine sulfinate de 99.9 6.8E-22 1.5E-26 181.5 23.0 201 42-268 18-236 (401)
126 PLN02822 serine palmitoyltrans 99.9 1.5E-22 3.2E-27 188.9 17.6 222 40-286 107-339 (481)
127 PRK09295 bifunctional cysteine 99.9 8.2E-22 1.8E-26 181.2 22.0 203 42-268 22-240 (406)
128 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 8E-22 1.7E-26 179.1 21.4 174 86-286 53-233 (370)
129 PRK02627 acetylornithine amino 99.9 2.6E-22 5.7E-27 183.9 17.7 240 38-299 35-290 (396)
130 PRK09331 Sep-tRNA:Cys-tRNA syn 99.9 1.3E-21 2.7E-26 178.8 21.2 204 42-268 18-235 (387)
131 TIGR02080 O_succ_thio_ly O-suc 99.9 7.3E-22 1.6E-26 179.4 18.7 186 77-296 45-236 (382)
132 PLN02855 Bifunctional selenocy 99.9 2.8E-21 6.1E-26 178.6 22.9 203 41-268 30-249 (424)
133 TIGR01979 sufS cysteine desulf 99.9 3.4E-21 7.4E-26 177.0 22.9 203 41-268 16-235 (403)
134 TIGR01976 am_tr_V_VC1184 cyste 99.9 2.1E-21 4.6E-26 178.0 20.1 200 44-268 18-231 (397)
135 PRK08045 cystathionine gamma-s 99.9 1.7E-21 3.8E-26 177.1 18.9 188 77-298 46-239 (386)
136 TIGR00707 argD acetylornithine 99.9 8.2E-22 1.8E-26 179.6 16.8 238 39-299 24-278 (379)
137 PRK08249 cystathionine gamma-s 99.9 1.7E-21 3.7E-26 177.8 18.5 180 85-297 65-249 (398)
138 PRK08133 O-succinylhomoserine 99.9 3.5E-21 7.5E-26 175.6 20.0 158 85-268 62-223 (390)
139 PRK07504 O-succinylhomoserine 99.9 4.2E-21 9E-26 175.4 20.3 194 43-268 30-227 (398)
140 PLN02721 threonine aldolase 99.9 1.5E-21 3.3E-26 176.1 17.1 216 42-286 5-232 (353)
141 PRK10534 L-threonine aldolase; 99.9 6.4E-22 1.4E-26 177.2 14.2 212 44-287 1-222 (333)
142 PRK08776 cystathionine gamma-s 99.9 3.8E-21 8.2E-26 175.8 19.2 179 86-297 62-246 (405)
143 PRK02948 cysteine desulfurase; 99.9 8.7E-21 1.9E-25 173.0 21.2 198 45-268 2-214 (381)
144 PRK13392 5-aminolevulinate syn 99.9 4.6E-21 1E-25 176.4 19.2 214 41-286 45-271 (410)
145 PRK07503 methionine gamma-lyas 99.9 7.6E-21 1.7E-25 174.0 20.3 166 85-284 66-236 (403)
146 PRK07179 hypothetical protein; 99.9 1.6E-20 3.4E-25 172.8 22.4 214 40-285 52-273 (407)
147 TIGR01326 OAH_OAS_sulfhy OAH/O 99.9 3.7E-21 8.1E-26 176.9 18.1 164 78-268 52-219 (418)
148 cd06454 KBL_like KBL_like; thi 99.9 1E-20 2.2E-25 170.3 20.5 201 43-267 2-214 (349)
149 PRK08861 cystathionine gamma-s 99.9 7.4E-21 1.6E-25 172.6 19.5 176 77-286 47-227 (388)
150 TIGR01977 am_tr_V_EF2568 cyste 99.9 1.1E-20 2.4E-25 171.9 20.7 194 58-269 10-215 (376)
151 PRK07811 cystathionine gamma-s 99.9 7.4E-21 1.6E-25 173.3 19.4 170 84-286 61-235 (388)
152 cd00613 GDC-P Glycine cleavage 99.9 9.5E-21 2.1E-25 173.7 19.5 206 41-268 19-240 (398)
153 cd00378 SHMT Serine-glycine hy 99.9 9.3E-21 2E-25 174.0 19.1 218 41-286 18-249 (402)
154 PRK07810 O-succinylhomoserine 99.9 6.6E-21 1.4E-25 174.2 18.0 164 77-267 64-232 (403)
155 PLN02483 serine palmitoyltrans 99.9 6.5E-21 1.4E-25 178.3 18.3 216 41-285 99-333 (489)
156 PRK01278 argD acetylornithine 99.9 7.1E-21 1.5E-25 174.1 18.1 241 38-299 27-283 (389)
157 PRK06767 methionine gamma-lyas 99.9 1.6E-20 3.5E-25 171.1 20.2 165 77-268 55-224 (386)
158 TIGR01328 met_gam_lyase methio 99.9 1.6E-20 3.5E-25 171.2 19.1 174 78-285 54-231 (391)
159 PRK07050 cystathionine beta-ly 99.9 1.3E-20 2.8E-25 171.9 18.1 185 77-295 59-249 (394)
160 PRK03244 argD acetylornithine 99.9 5.8E-21 1.2E-25 175.2 15.6 234 38-299 39-291 (398)
161 PRK08247 cystathionine gamma-s 99.9 1.2E-20 2.7E-25 170.8 17.5 187 77-298 46-238 (366)
162 TIGR02379 ECA_wecE TDP-4-keto- 99.9 4.6E-20 1E-24 167.4 21.1 194 62-287 11-208 (376)
163 KOG1411 Aspartate aminotransfe 99.9 3.7E-21 8E-26 163.7 12.5 276 16-298 30-319 (427)
164 PLN02409 serine--glyoxylate am 99.9 2.3E-20 5E-25 171.2 18.2 192 59-268 19-216 (401)
165 cd06453 SufS_like Cysteine des 99.9 4.6E-20 1E-24 167.7 19.9 190 59-268 10-215 (373)
166 cd00614 CGS_like CGS_like: Cys 99.9 3E-20 6.5E-25 168.6 18.6 170 84-286 40-214 (369)
167 cd06451 AGAT_like Alanine-glyo 99.9 3.3E-20 7.1E-25 167.7 18.8 189 58-268 8-201 (356)
168 TIGR01325 O_suc_HS_sulf O-succ 99.9 4.6E-20 9.9E-25 167.9 19.8 174 78-286 49-227 (380)
169 PRK08574 cystathionine gamma-s 99.9 2.9E-20 6.4E-25 169.1 18.5 169 85-287 54-227 (385)
170 TIGR01437 selA_rel uncharacter 99.9 1.2E-19 2.5E-24 164.2 22.3 196 41-267 7-222 (363)
171 PRK06460 hypothetical protein; 99.9 4.5E-20 9.8E-25 167.5 19.2 170 84-287 45-219 (376)
172 PRK11658 UDP-4-amino-4-deoxy-L 99.8 1.2E-19 2.6E-24 165.2 20.8 192 62-286 14-207 (379)
173 PRK08248 O-acetylhomoserine am 99.8 1.2E-19 2.5E-24 167.1 20.1 159 85-269 65-227 (431)
174 cd00610 OAT_like Acetyl ornith 99.8 4.9E-20 1.1E-24 169.8 17.5 225 39-282 33-281 (413)
175 PRK14012 cysteine desulfurase; 99.8 3.6E-19 7.9E-24 163.6 22.1 200 45-269 5-221 (404)
176 cd00615 Orn_deC_like Ornithine 99.8 3.7E-20 8E-25 163.0 14.6 166 86-267 61-233 (294)
177 TIGR01821 5aminolev_synth 5-am 99.8 2.5E-19 5.5E-24 164.5 20.6 213 41-285 44-269 (402)
178 TIGR03403 nifS_epsilon cystein 99.8 1.5E-19 3.1E-24 165.0 18.9 193 59-268 10-216 (382)
179 COG0520 csdA Selenocysteine ly 99.8 8.3E-19 1.8E-23 159.6 23.2 204 41-268 20-239 (405)
180 PRK07582 cystathionine gamma-l 99.8 1.3E-19 2.8E-24 164.0 16.8 173 77-287 45-222 (366)
181 TIGR03235 DNA_S_dndA cysteine 99.8 4.5E-19 9.7E-24 160.1 20.2 191 59-269 9-215 (353)
182 PRK09064 5-aminolevulinate syn 99.8 4.8E-19 1E-23 163.0 20.7 212 41-285 45-270 (407)
183 TIGR02006 IscS cysteine desulf 99.8 5.9E-19 1.3E-23 162.1 21.1 201 44-269 4-219 (402)
184 PRK09028 cystathionine beta-ly 99.8 4.4E-19 9.5E-24 161.0 19.8 181 58-266 35-222 (394)
185 PRK05939 hypothetical protein; 99.8 3.9E-19 8.5E-24 162.2 19.5 156 87-268 50-208 (397)
186 cd01494 AAT_I Aspartate aminot 99.8 5.4E-19 1.2E-23 142.2 17.7 166 86-266 2-169 (170)
187 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.8 1.4E-18 2.9E-23 158.2 22.2 191 63-286 12-206 (375)
188 PRK06084 O-acetylhomoserine am 99.8 5.7E-19 1.2E-23 162.4 19.3 158 85-268 59-220 (425)
189 TIGR01329 cysta_beta_ly_E cyst 99.8 7.6E-19 1.6E-23 159.6 19.7 175 79-287 40-221 (378)
190 cd06450 DOPA_deC_like DOPA dec 99.8 8.5E-20 1.9E-24 164.2 13.3 197 61-266 12-229 (345)
191 TIGR03402 FeS_nifS cysteine de 99.8 1.2E-18 2.7E-23 158.8 20.5 188 59-268 10-212 (379)
192 KOG1549 Cysteine desulfurase N 99.8 1.1E-18 2.5E-23 154.5 19.2 204 40-268 40-257 (428)
193 PLN02651 cysteine desulfurase 99.8 3.1E-18 6.8E-23 155.3 22.3 190 59-268 10-214 (364)
194 PF12897 Aminotran_MocR: Alani 99.8 4.7E-19 1E-23 154.2 15.9 205 76-299 60-293 (425)
195 TIGR01324 cysta_beta_ly_B cyst 99.8 2.3E-18 5E-23 156.1 20.1 156 86-267 52-212 (377)
196 PRK02936 argD acetylornithine 99.8 1.6E-18 3.5E-23 157.8 18.6 241 38-299 25-275 (377)
197 PRK13393 5-aminolevulinate syn 99.8 2.8E-18 6.1E-23 157.8 20.1 214 41-286 44-270 (406)
198 PRK06702 O-acetylhomoserine am 99.8 1.4E-18 3.1E-23 159.0 17.9 157 85-266 62-232 (432)
199 TIGR00713 hemL glutamate-1-sem 99.8 1E-18 2.2E-23 161.5 16.5 239 36-299 42-305 (423)
200 PRK00451 glycine dehydrogenase 99.8 3.1E-18 6.6E-23 159.5 19.6 201 43-268 69-284 (447)
201 PRK07671 cystathionine beta-ly 99.8 3.2E-18 7E-23 155.4 19.3 169 85-287 51-224 (377)
202 TIGR03301 PhnW-AepZ 2-aminoeth 99.8 2.7E-18 5.7E-23 154.9 18.4 188 58-268 8-202 (355)
203 PRK05093 argD bifunctional N-s 99.8 2.5E-18 5.5E-23 157.9 18.5 233 38-299 36-292 (403)
204 KOG1412 Aspartate aminotransfe 99.8 8.9E-19 1.9E-23 147.4 13.9 246 18-267 10-268 (410)
205 PRK13479 2-aminoethylphosphona 99.8 3.8E-18 8.3E-23 154.9 19.1 190 58-268 14-208 (368)
206 PRK08064 cystathionine beta-ly 99.8 4.8E-18 1E-22 155.0 19.5 168 86-287 56-228 (390)
207 PLN03227 serine palmitoyltrans 99.8 4.6E-18 1E-22 155.3 19.3 211 45-285 1-232 (392)
208 PRK07269 cystathionine gamma-s 99.8 3.8E-18 8.3E-23 154.0 18.3 177 77-286 48-225 (364)
209 PRK06176 cystathionine gamma-s 99.8 5.9E-18 1.3E-22 153.8 19.3 167 86-286 52-223 (380)
210 PRK00011 glyA serine hydroxyme 99.8 3.8E-18 8.2E-23 157.4 18.2 218 41-287 24-254 (416)
211 PRK08134 O-acetylhomoserine am 99.8 8.9E-18 1.9E-22 154.6 19.5 157 85-267 65-225 (433)
212 TIGR02326 transamin_PhnW 2-ami 99.8 4.4E-18 9.6E-23 154.2 17.3 162 87-268 38-206 (363)
213 PRK04073 rocD ornithine--oxo-a 99.8 5E-18 1.1E-22 155.6 17.7 235 38-299 36-295 (396)
214 PRK05968 hypothetical protein; 99.8 1.2E-17 2.6E-22 152.4 19.6 165 86-285 65-234 (389)
215 COG0156 BioF 7-keto-8-aminopel 99.8 1.6E-17 3.4E-22 148.9 18.9 216 40-287 37-266 (388)
216 TIGR03588 PseC UDP-4-keto-6-de 99.8 3.8E-17 8.1E-22 149.0 21.9 190 62-285 10-209 (380)
217 COG1104 NifS Cysteine sulfinat 99.8 2.1E-17 4.5E-22 146.0 18.5 188 59-266 12-215 (386)
218 PRK13520 L-tyrosine decarboxyl 99.8 3E-17 6.6E-22 149.1 20.3 192 61-268 33-235 (371)
219 PRK05994 O-acetylhomoserine am 99.8 2.2E-17 4.7E-22 152.2 19.3 156 86-267 65-224 (427)
220 cd00616 AHBA_syn 3-amino-5-hyd 99.8 3.9E-17 8.4E-22 147.3 19.9 186 66-285 3-192 (352)
221 TIGR03812 tyr_de_CO2_Arch tyro 99.8 2.5E-17 5.5E-22 149.7 18.7 169 87-268 62-240 (373)
222 PRK00854 rocD ornithine--oxo-a 99.8 1.8E-17 4E-22 152.2 17.8 233 39-299 38-296 (401)
223 PRK05967 cystathionine beta-ly 99.8 2.9E-17 6.4E-22 148.9 18.6 161 84-266 60-225 (395)
224 PRK04366 glycine dehydrogenase 99.8 7.2E-17 1.6E-21 151.0 21.3 205 47-268 73-291 (481)
225 PRK12381 bifunctional succinyl 99.8 3.1E-17 6.7E-22 150.7 17.9 240 38-299 35-291 (406)
226 PRK07505 hypothetical protein; 99.8 9.2E-17 2E-21 147.5 20.8 217 38-286 42-275 (402)
227 PRK15407 lipopolysaccharide bi 99.8 1.5E-16 3.3E-21 146.9 22.3 210 44-287 25-247 (438)
228 PLN02509 cystathionine beta-ly 99.8 6.5E-17 1.4E-21 149.4 19.3 166 78-268 125-295 (464)
229 PF00266 Aminotran_5: Aminotra 99.8 1.8E-16 3.9E-21 144.1 21.1 199 59-285 10-224 (371)
230 PLN02955 8-amino-7-oxononanoat 99.7 3.2E-16 7E-21 143.6 21.0 214 42-287 102-343 (476)
231 PRK07812 O-acetylhomoserine am 99.7 2E-16 4.4E-21 145.5 19.5 158 85-267 70-231 (436)
232 PF01041 DegT_DnrJ_EryC1: DegT 99.7 3.2E-16 7E-21 142.0 18.8 193 62-287 5-201 (363)
233 COG0399 WecE Predicted pyridox 99.7 6.5E-16 1.4E-20 137.6 19.5 192 62-287 15-210 (374)
234 PTZ00125 ornithine aminotransf 99.7 4.2E-16 9E-21 143.1 18.7 241 38-298 27-286 (400)
235 PRK05937 8-amino-7-oxononanoat 99.7 6.2E-16 1.3E-20 140.5 19.4 199 41-260 3-220 (370)
236 PRK08088 4-aminobutyrate amino 99.7 3.7E-16 8E-21 144.4 17.8 245 38-299 37-307 (425)
237 PRK04260 acetylornithine amino 99.7 8.2E-16 1.8E-20 140.0 19.6 238 38-299 25-273 (375)
238 PRK08114 cystathionine beta-ly 99.7 1.1E-15 2.4E-20 138.5 19.2 155 86-266 64-225 (395)
239 TIGR03246 arg_catab_astC succi 99.7 1.3E-15 2.8E-20 139.6 18.7 219 38-284 31-271 (397)
240 PRK05613 O-acetylhomoserine am 99.7 3E-15 6.5E-20 137.9 18.3 157 86-267 71-231 (437)
241 TIGR01814 kynureninase kynuren 99.7 7.6E-15 1.7E-19 135.0 20.3 193 42-258 26-240 (406)
242 PF01053 Cys_Met_Meta_PP: Cys/ 99.7 4.6E-15 1E-19 134.2 18.1 169 86-286 57-231 (386)
243 PRK00062 glutamate-1-semialdeh 99.7 1.2E-15 2.6E-20 141.0 14.5 225 36-283 44-287 (426)
244 PRK04612 argD acetylornithine 99.7 7.9E-15 1.7E-19 134.5 18.5 244 36-299 34-295 (408)
245 PRK08360 4-aminobutyrate amino 99.6 2.2E-14 4.7E-19 132.9 20.9 244 36-298 35-311 (443)
246 PLN00144 acetylornithine trans 99.6 4.8E-15 1E-19 135.0 16.3 239 38-299 11-275 (382)
247 TIGR03531 selenium_SpcS O-phos 99.6 1.1E-14 2.5E-19 133.3 18.8 186 87-285 104-298 (444)
248 PRK04311 selenocysteine syntha 99.6 5.4E-14 1.2E-18 130.1 22.9 191 59-267 97-306 (464)
249 PLN02624 ornithine-delta-amino 99.6 1.1E-14 2.4E-19 136.0 17.2 211 38-267 71-308 (474)
250 PF04864 Alliinase_C: Allinase 99.6 6.2E-17 1.3E-21 139.2 1.7 218 45-298 1-234 (363)
251 COG0075 Serine-pyruvate aminot 99.6 2.5E-14 5.5E-19 127.3 18.1 190 58-268 14-208 (383)
252 KOG0053 Cystathionine beta-lya 99.6 3.8E-14 8.3E-19 125.7 18.6 178 86-295 79-261 (409)
253 PRK06918 4-aminobutyrate amino 99.6 3.8E-14 8.1E-19 131.9 19.4 246 37-299 49-327 (451)
254 TIGR00474 selA seryl-tRNA(sec) 99.6 2.1E-13 4.6E-18 125.8 23.3 192 59-268 92-302 (454)
255 TIGR01885 Orn_aminotrans ornit 99.6 2.4E-14 5.2E-19 131.5 16.9 219 39-284 34-279 (401)
256 PRK09792 4-aminobutyrate trans 99.6 6.5E-14 1.4E-18 129.2 19.7 245 36-298 34-305 (421)
257 COG0626 MetC Cystathionine bet 99.6 1E-13 2.3E-18 124.3 19.9 156 85-266 64-224 (396)
258 TIGR02618 tyr_phenol_ly tyrosi 99.6 7.1E-14 1.5E-18 126.8 18.5 202 62-286 50-278 (450)
259 TIGR00700 GABAtrnsam 4-aminobu 99.6 5.1E-14 1.1E-18 129.9 17.1 245 38-299 29-305 (420)
260 PRK06434 cystathionine gamma-l 99.6 8.6E-14 1.9E-18 126.2 17.9 165 85-285 65-234 (384)
261 COG2873 MET17 O-acetylhomoseri 99.6 5.6E-14 1.2E-18 121.7 15.2 158 85-268 63-224 (426)
262 PRK06777 4-aminobutyrate amino 99.6 1.6E-13 3.4E-18 126.6 17.7 247 36-299 34-306 (421)
263 COG2008 GLY1 Threonine aldolas 99.5 9.6E-14 2.1E-18 120.5 13.8 204 60-285 12-223 (342)
264 PF01276 OKR_DC_1: Orn/Lys/Arg 99.5 3.8E-14 8.3E-19 128.0 11.5 174 82-269 63-255 (417)
265 TIGR01788 Glu-decarb-GAD gluta 99.5 7.7E-13 1.7E-17 121.7 18.9 199 61-269 54-277 (431)
266 PF01212 Beta_elim_lyase: Beta 99.5 2.3E-14 5E-19 125.0 7.3 192 61-269 8-209 (290)
267 PLN02994 1-aminocyclopropane-1 99.5 1.7E-13 3.6E-18 108.0 10.9 98 40-143 41-153 (153)
268 PRK13237 tyrosine phenol-lyase 99.5 1.6E-12 3.5E-17 118.3 18.5 183 79-286 73-285 (460)
269 PLN02414 glycine dehydrogenase 99.5 1.1E-12 2.4E-17 130.0 18.7 177 77-268 554-749 (993)
270 PRK13034 serine hydroxymethylt 99.5 3.4E-12 7.3E-17 117.6 20.5 215 22-268 13-245 (416)
271 PRK06058 4-aminobutyrate amino 99.5 2.8E-12 6E-17 119.1 19.9 244 38-298 52-326 (443)
272 PRK02769 histidine decarboxyla 99.5 6.4E-12 1.4E-16 114.0 21.5 172 87-268 64-246 (380)
273 PLN03032 serine decarboxylase; 99.5 1.9E-12 4E-17 116.8 17.7 171 87-268 65-249 (374)
274 COG1103 Archaea-specific pyrid 99.5 2.8E-12 6.1E-17 106.7 17.1 205 41-268 14-233 (382)
275 PRK07495 4-aminobutyrate amino 99.5 3.1E-12 6.8E-17 118.0 19.4 244 36-298 34-305 (425)
276 PRK03715 argD acetylornithine 99.5 9.6E-12 2.1E-16 113.8 20.2 216 38-268 32-263 (395)
277 PRK15029 arginine decarboxylas 99.4 3.5E-12 7.6E-17 123.3 17.0 169 83-266 203-398 (755)
278 PRK08117 4-aminobutyrate amino 99.4 1.2E-11 2.5E-16 114.8 19.7 220 38-267 39-290 (433)
279 PRK05964 adenosylmethionine--8 99.4 8.9E-12 1.9E-16 115.2 18.3 231 36-283 36-292 (423)
280 PRK09264 diaminobutyrate--2-ox 99.4 2E-11 4.4E-16 112.8 19.9 225 37-268 34-283 (425)
281 COG0076 GadB Glutamate decarbo 99.4 4.2E-11 9.1E-16 110.7 21.7 201 60-269 74-292 (460)
282 PTZ00094 serine hydroxymethylt 99.4 2.4E-11 5.2E-16 113.2 20.3 216 22-268 19-259 (452)
283 cd00611 PSAT_like Phosphoserin 99.4 2.9E-12 6.3E-17 115.8 13.4 184 58-268 8-207 (355)
284 PRK06541 hypothetical protein; 99.4 3E-11 6.4E-16 112.5 20.3 223 36-268 46-306 (460)
285 COG4992 ArgD Ornithine/acetylo 99.4 8.2E-12 1.8E-16 110.7 15.4 220 36-267 36-267 (404)
286 TIGR02407 ectoine_ectB diamino 99.4 3.7E-11 8E-16 110.6 19.8 226 36-268 29-279 (412)
287 TIGR00709 dat 2,4-diaminobutyr 99.4 5.9E-11 1.3E-15 110.2 21.0 225 36-268 33-290 (442)
288 PLN02724 Molybdenum cofactor s 99.4 3.8E-11 8.3E-16 119.0 20.5 208 43-268 34-277 (805)
289 KOG1359 Glycine C-acetyltransf 99.4 3E-12 6.6E-17 107.6 10.7 206 41-287 66-288 (417)
290 PRK04013 argD acetylornithine/ 99.4 2.5E-11 5.4E-16 109.6 16.8 215 38-268 20-245 (364)
291 KOG1368 Threonine aldolase [Am 99.4 3.9E-12 8.4E-17 107.2 10.6 202 61-286 35-249 (384)
292 PRK03080 phosphoserine aminotr 99.4 9E-12 1.9E-16 113.5 13.4 187 44-268 13-209 (378)
293 PF06838 Met_gamma_lyase: Meth 99.3 1.9E-10 4.2E-15 100.2 19.4 179 88-287 54-250 (403)
294 PRK13580 serine hydroxymethylt 99.3 1.2E-10 2.7E-15 107.3 18.6 217 41-283 48-307 (493)
295 PRK08593 4-aminobutyrate amino 99.3 2.2E-10 4.7E-15 106.4 19.7 229 38-283 38-298 (445)
296 KOG1360 5-aminolevulinate synt 99.3 5.8E-11 1.3E-15 103.8 14.2 213 42-287 171-397 (570)
297 PLN02880 tyrosine decarboxylas 99.3 3E-10 6.5E-15 106.5 19.9 198 64-268 99-322 (490)
298 TIGR01364 serC_1 phosphoserine 99.3 1.3E-10 2.9E-15 104.6 16.9 186 60-268 3-199 (349)
299 COG0160 GabT 4-aminobutyrate a 99.3 3.6E-10 7.7E-15 103.0 19.4 222 37-267 51-305 (447)
300 PRK05769 4-aminobutyrate amino 99.3 3.8E-10 8.3E-15 104.7 20.0 222 38-268 50-305 (441)
301 PLN02590 probable tyrosine dec 99.3 8.9E-10 1.9E-14 103.7 22.0 199 64-269 147-371 (539)
302 PRK13578 ornithine decarboxyla 99.3 7E-11 1.5E-15 113.4 14.4 173 79-266 168-367 (720)
303 KOG2862 Alanine-glyoxylate ami 99.3 2.4E-10 5.2E-15 97.1 15.3 150 106-268 67-220 (385)
304 PLN03226 serine hydroxymethylt 99.2 1.6E-09 3.5E-14 101.1 20.5 221 22-268 19-260 (475)
305 TIGR03799 NOD_PanD_pyr putativ 99.2 2E-09 4.3E-14 101.3 20.9 184 78-269 119-349 (522)
306 PRK05355 3-phosphoserine/phosp 99.2 9.3E-10 2E-14 99.5 17.6 185 58-268 12-210 (360)
307 PLN02271 serine hydroxymethylt 99.2 2.8E-09 6.1E-14 99.1 20.6 206 42-267 148-374 (586)
308 PLN02482 glutamate-1-semialdeh 99.2 2.1E-09 4.6E-14 100.2 19.6 223 38-283 95-336 (474)
309 TIGR03372 putres_am_tran putre 99.2 1.6E-09 3.5E-14 100.2 18.3 218 36-267 69-308 (442)
310 PLN02263 serine decarboxylase 99.2 4.5E-09 9.9E-14 96.8 21.1 176 85-268 130-316 (470)
311 COG0001 HemL Glutamate-1-semia 99.2 4.1E-09 8.8E-14 94.7 19.1 222 38-284 49-291 (432)
312 PRK15399 lysine decarboxylase 99.2 1.3E-09 2.9E-14 104.6 17.0 171 79-266 189-379 (713)
313 PRK15400 lysine decarboxylase 99.2 5.5E-10 1.2E-14 107.2 14.2 171 79-265 189-378 (714)
314 PF00282 Pyridoxal_deC: Pyrido 99.1 8.2E-09 1.8E-13 93.7 20.1 198 64-269 56-278 (373)
315 PRK05367 glycine dehydrogenase 99.1 5.7E-09 1.2E-13 104.3 20.4 203 41-267 498-722 (954)
316 PLN02760 4-aminobutyrate:pyruv 99.1 4.4E-09 9.6E-14 98.9 18.6 230 38-283 85-352 (504)
317 TIGR00461 gcvP glycine dehydro 99.1 8.4E-09 1.8E-13 101.8 20.9 177 77-268 516-711 (939)
318 PRK11522 putrescine--2-oxoglut 99.1 2.7E-09 5.9E-14 99.3 15.9 221 36-267 76-315 (459)
319 PRK07482 hypothetical protein; 99.1 7.6E-09 1.6E-13 96.6 18.8 221 37-267 45-304 (461)
320 PRK12389 glutamate-1-semialdeh 99.1 5.5E-09 1.2E-13 96.8 17.7 223 38-283 49-290 (428)
321 PRK06082 4-aminobutyrate amino 99.1 1.1E-08 2.4E-13 95.4 19.3 218 39-268 69-313 (459)
322 PRK07678 aminotransferase; Val 99.1 8.3E-09 1.8E-13 96.1 18.1 229 36-283 41-305 (451)
323 PRK07046 aminotransferase; Val 99.1 1.7E-08 3.8E-13 93.9 19.9 219 38-283 71-307 (453)
324 PRK06105 aminotransferase; Pro 99.1 1.6E-08 3.4E-13 94.4 19.6 232 36-283 42-310 (460)
325 PRK05965 hypothetical protein; 99.1 7.6E-09 1.7E-13 96.5 17.4 223 36-268 40-300 (459)
326 PRK12403 putative aminotransfe 99.1 2.6E-08 5.7E-13 92.9 20.7 222 36-267 48-306 (460)
327 COG1982 LdcC Arginine/lysine/o 99.1 3.1E-09 6.8E-14 98.4 14.2 168 83-265 68-243 (557)
328 PRK13360 omega amino acid--pyr 99.1 2.2E-08 4.9E-13 92.9 19.9 222 37-267 41-299 (442)
329 PRK06943 adenosylmethionine--8 99.1 2.4E-08 5.1E-13 93.0 19.6 223 36-268 48-307 (453)
330 PRK06062 hypothetical protein; 99.1 2E-08 4.3E-13 93.6 19.1 229 36-283 47-306 (451)
331 PRK05639 4-aminobutyrate amino 99.0 1.5E-08 3.3E-13 94.4 18.0 223 36-268 47-306 (457)
332 PRK06149 hypothetical protein; 99.0 1.2E-08 2.5E-13 103.4 18.5 224 38-283 581-836 (972)
333 PRK00615 glutamate-1-semialdeh 99.0 1.2E-08 2.5E-13 94.4 17.0 226 36-283 47-291 (433)
334 PRK09221 beta alanine--pyruvat 99.0 3.1E-08 6.7E-13 92.1 19.1 223 36-267 43-302 (445)
335 TIGR01365 serC_2 phosphoserine 99.0 4.6E-09 1E-13 94.9 13.0 178 64-268 19-200 (374)
336 TIGR01366 serC_3 phosphoserine 99.0 2.4E-09 5.3E-14 96.9 11.0 180 59-268 13-200 (361)
337 PRK07986 adenosylmethionine--8 99.0 1.6E-08 3.6E-13 93.4 16.3 231 36-284 37-298 (428)
338 PRK07481 hypothetical protein; 99.0 6.1E-08 1.3E-12 90.3 19.6 224 37-268 37-298 (449)
339 PRK05630 adenosylmethionine--8 99.0 1.8E-08 4E-13 93.0 16.0 220 36-268 34-286 (422)
340 PF00202 Aminotran_3: Aminotra 99.0 7.6E-09 1.6E-13 92.9 13.0 214 38-268 12-261 (339)
341 TIGR02617 tnaA_trp_ase tryptop 99.0 1.1E-08 2.4E-13 92.7 13.7 207 41-268 40-280 (467)
342 PRK06917 hypothetical protein; 99.0 1.2E-07 2.6E-12 88.2 21.0 230 36-283 25-292 (447)
343 PRK08742 adenosylmethionine--8 99.0 6.3E-08 1.4E-12 90.5 18.9 225 36-268 58-322 (472)
344 PRK07036 hypothetical protein; 99.0 8.8E-08 1.9E-12 89.6 19.7 230 36-283 45-313 (466)
345 COG4100 Cystathionine beta-lya 99.0 6.3E-08 1.4E-12 82.2 16.5 167 85-266 66-248 (416)
346 PRK07480 putative aminotransfe 99.0 8.4E-08 1.8E-12 89.4 19.1 222 36-267 44-303 (456)
347 PRK06916 adenosylmethionine--8 99.0 5E-08 1.1E-12 91.1 17.6 221 38-268 52-309 (460)
348 PRK07483 hypothetical protein; 98.9 8.1E-08 1.8E-12 89.3 18.5 221 38-268 26-285 (443)
349 PRK07030 adenosylmethionine--8 98.9 6.3E-08 1.4E-12 90.5 17.5 223 36-268 41-300 (466)
350 COG0112 GlyA Glycine/serine hy 98.9 8.1E-08 1.7E-12 84.7 16.9 229 22-284 11-252 (413)
351 TIGR00508 bioA adenosylmethion 98.9 3E-08 6.6E-13 91.7 15.3 228 38-284 41-301 (427)
352 PRK06938 diaminobutyrate--2-ox 98.9 1.3E-07 2.8E-12 88.3 19.2 223 37-267 58-314 (464)
353 PRK06148 hypothetical protein; 98.9 7.4E-08 1.6E-12 97.8 18.5 217 38-267 620-868 (1013)
354 COG1921 SelA Selenocysteine sy 98.9 1.8E-07 3.8E-12 83.3 18.3 201 60-285 39-246 (395)
355 PRK06173 adenosylmethionine--8 98.9 1.3E-07 2.8E-12 87.5 18.1 221 36-267 38-291 (429)
356 PF00464 SHMT: Serine hydroxym 98.9 3.2E-08 7E-13 89.5 13.4 223 42-285 20-269 (399)
357 PRK12566 glycine dehydrogenase 98.9 6.7E-08 1.5E-12 95.1 16.1 174 78-266 530-722 (954)
358 PRK06209 glutamate-1-semialdeh 98.9 6.8E-08 1.5E-12 89.5 15.1 213 36-267 42-265 (431)
359 PRK06931 diaminobutyrate--2-ox 98.8 6.2E-07 1.3E-11 83.7 20.3 224 36-267 52-308 (459)
360 KOG1358 Serine palmitoyltransf 98.8 2.1E-07 4.6E-12 81.7 14.7 203 40-266 92-315 (467)
361 PRK12462 phosphoserine aminotr 98.8 4.3E-07 9.3E-12 81.6 17.0 196 43-268 4-212 (364)
362 KOG1357 Serine palmitoyltransf 98.8 1.7E-08 3.7E-13 89.9 7.8 212 58-299 154-387 (519)
363 PRK05367 glycine dehydrogenase 98.8 2.7E-07 5.9E-12 92.4 17.2 161 77-268 105-286 (954)
364 PLN02414 glycine dehydrogenase 98.7 4.4E-07 9.6E-12 90.8 17.1 180 59-268 116-314 (993)
365 PLN02452 phosphoserine transam 98.7 7.9E-07 1.7E-11 80.4 16.9 196 42-268 6-214 (365)
366 COG0161 BioA Adenosylmethionin 98.7 4.4E-07 9.5E-12 82.6 15.1 231 38-284 40-308 (449)
367 PLN02974 adenosylmethionine-8- 98.7 7.5E-07 1.6E-11 87.9 17.2 216 43-268 366-670 (817)
368 TIGR03251 LAT_fam L-lysine 6-t 98.7 8.6E-07 1.9E-11 82.3 16.2 209 40-254 36-289 (431)
369 KOG1404 Alanine-glyoxylate ami 98.7 2.5E-07 5.4E-12 81.3 11.7 230 36-286 44-306 (442)
370 TIGR00699 GABAtrns_euk 4-amino 98.7 8.5E-07 1.9E-11 82.5 16.0 209 38-258 54-328 (464)
371 PRK08297 L-lysine aminotransfe 98.7 8.2E-07 1.8E-11 82.6 15.6 209 40-254 43-296 (443)
372 KOG1401 Acetylornithine aminot 98.7 1.2E-06 2.7E-11 77.5 15.4 218 39-268 53-290 (433)
373 TIGR03811 tyr_de_CO2_Ent tyros 98.7 2.6E-06 5.6E-11 81.4 18.8 148 75-226 110-326 (608)
374 COG1003 GcvP Glycine cleavage 98.6 2.6E-06 5.5E-11 76.1 14.8 174 77-266 95-285 (496)
375 COG3844 Kynureninase [Amino ac 98.5 1.2E-05 2.5E-10 69.5 16.4 155 89-266 81-243 (407)
376 PF03841 SelA: L-seryl-tRNA se 98.5 1.7E-07 3.6E-12 82.8 5.5 206 60-285 18-236 (367)
377 KOG1383 Glutamate decarboxylas 98.2 1.4E-05 3.1E-10 72.0 10.5 178 85-269 117-305 (491)
378 PF02347 GDC-P: Glycine cleava 98.2 0.00015 3.3E-09 66.3 16.5 154 87-268 113-277 (429)
379 TIGR00461 gcvP glycine dehydro 98.1 0.00022 4.8E-09 71.2 17.3 177 59-268 77-274 (939)
380 KOG1402 Ornithine aminotransfe 98.0 5.8E-05 1.3E-09 65.3 10.9 211 41-266 58-290 (427)
381 KOG0628 Aromatic-L-amino-acid/ 97.7 0.0015 3.2E-08 59.2 14.0 195 23-227 51-279 (511)
382 COG3033 TnaA Tryptophanase [Am 97.5 0.00087 1.9E-08 58.9 9.9 136 79-222 74-228 (471)
383 PLN02672 methionine S-methyltr 97.5 0.0036 7.9E-08 63.7 15.4 215 64-298 406-640 (1082)
384 KOG0629 Glutamate decarboxylas 97.4 0.0045 9.8E-08 55.7 13.2 193 65-266 119-334 (510)
385 COG0403 GcvP Glycine cleavage 97.3 0.017 3.6E-07 52.2 15.6 168 76-267 103-290 (450)
386 PF05889 SLA_LP_auto_ag: Solub 97.2 0.00094 2E-08 59.9 7.1 167 107-285 74-248 (389)
387 KOG2467 Glycine/serine hydroxy 97.2 0.021 4.6E-07 50.6 14.3 219 22-267 25-265 (477)
388 KOG1403 Predicted alanine-glyo 97.1 0.00064 1.4E-08 58.3 4.5 205 59-284 61-302 (452)
389 PRK12566 glycine dehydrogenase 96.5 0.19 4.2E-06 50.6 17.1 118 77-217 108-241 (954)
390 KOG2040 Glycine dehydrogenase 95.8 0.19 4E-06 48.1 12.2 140 78-227 569-724 (1001)
391 COG1932 SerC Phosphoserine ami 95.8 0.16 3.4E-06 45.3 11.2 208 42-284 4-222 (365)
392 KOG1405 4-aminobutyrate aminot 95.3 0.061 1.3E-06 47.6 6.7 86 169-258 254-348 (484)
393 KOG3846 L-kynurenine hydrolase 94.6 0.81 1.8E-05 39.9 11.6 206 40-266 64-290 (465)
394 KOG3843 Predicted serine hydro 86.0 5.2 0.00011 34.4 7.9 135 120-257 89-230 (432)
395 KOG2790 Phosphoserine aminotra 84.9 26 0.00056 30.6 12.5 194 41-261 5-214 (370)
396 PF05368 NmrA: NmrA-like famil 82.0 14 0.00031 30.8 9.4 91 116-218 8-99 (233)
397 PF13460 NAD_binding_10: NADH( 80.9 15 0.00033 29.2 8.8 90 110-214 1-90 (183)
398 COG2102 Predicted ATPases of P 79.5 27 0.00058 29.2 9.6 99 109-217 3-116 (223)
399 KOG1201 Hydroxysteroid 17-beta 79.4 30 0.00066 30.3 10.3 99 104-208 35-144 (300)
400 KOG2040 Glycine dehydrogenase 78.3 48 0.001 32.5 11.9 100 105-219 178-282 (1001)
401 TIGR03573 WbuX N-acetyl sugar 75.1 48 0.001 29.9 11.0 107 107-227 60-174 (343)
402 KOG2741 Dimeric dihydrodiol de 74.3 45 0.00097 29.9 10.1 76 138-224 58-133 (351)
403 PRK10595 SOS cell division inh 74.3 42 0.00092 26.7 10.0 102 109-214 30-135 (164)
404 PLN02591 tryptophan synthase 73.7 57 0.0012 28.0 15.7 157 40-217 28-193 (250)
405 TIGR01470 cysG_Nterm siroheme 73.3 51 0.0011 27.2 10.7 96 105-221 7-103 (205)
406 COG1184 GCD2 Translation initi 72.4 69 0.0015 28.3 10.8 107 105-222 117-231 (301)
407 cd06568 GH20_SpHex_like A subg 71.4 10 0.00022 33.9 5.8 68 146-217 25-92 (329)
408 COG1648 CysG Siroheme synthase 71.3 52 0.0011 27.4 9.5 95 105-221 10-106 (210)
409 CHL00200 trpA tryptophan synth 70.7 70 0.0015 27.7 15.2 156 40-218 41-207 (263)
410 COG1091 RfbD dTDP-4-dehydrorha 69.4 46 0.00099 29.1 9.0 99 168-269 37-155 (281)
411 cd02742 GH20_hexosaminidase Be 68.0 12 0.00026 33.1 5.3 67 146-217 23-89 (303)
412 TIGR03581 EF_0839 conserved hy 67.7 61 0.0013 27.1 8.8 160 58-227 37-216 (236)
413 PRK04296 thymidine kinase; Pro 66.8 34 0.00074 27.8 7.5 95 117-224 17-117 (190)
414 TIGR00262 trpA tryptophan synt 66.4 85 0.0018 27.0 15.7 158 40-218 36-203 (256)
415 PRK05678 succinyl-CoA syntheta 65.4 96 0.0021 27.3 10.7 53 168-226 77-129 (291)
416 COG0296 GlgB 1,4-alpha-glucan 63.6 10 0.00022 37.0 4.2 35 193-227 207-241 (628)
417 cd06570 GH20_chitobiase-like_1 63.1 18 0.00038 32.2 5.5 25 193-217 61-85 (311)
418 PF14258 DUF4350: Domain of un 62.4 42 0.00091 22.1 6.3 60 144-219 10-70 (70)
419 cd06562 GH20_HexA_HexB-like Be 61.1 15 0.00033 33.2 4.8 62 147-217 26-87 (348)
420 TIGR00623 sula cell division i 60.5 87 0.0019 25.1 9.5 84 126-214 55-139 (168)
421 PRK08265 short chain dehydroge 60.3 1E+02 0.0023 26.0 10.1 55 106-160 5-59 (261)
422 PF02662 FlpD: Methyl-viologen 59.1 48 0.001 25.0 6.5 58 153-214 29-91 (124)
423 COG1105 FruK Fructose-1-phosph 58.7 1E+02 0.0022 27.4 9.2 58 165-225 108-171 (310)
424 PF04392 ABC_sub_bind: ABC tra 58.3 71 0.0015 27.8 8.5 142 62-217 14-164 (294)
425 KOG1465 Translation initiation 58.1 1.3E+02 0.0029 26.5 9.5 105 106-220 161-271 (353)
426 KOG1467 Translation initiation 57.9 94 0.002 29.3 9.1 130 84-223 325-472 (556)
427 TIGR00289 conserved hypothetic 57.6 1.2E+02 0.0025 25.6 9.6 98 110-217 4-115 (222)
428 smart00642 Aamy Alpha-amylase 57.1 14 0.00031 29.4 3.5 29 198-226 68-96 (166)
429 COG4221 Short-chain alcohol de 56.6 57 0.0012 27.8 7.1 95 109-208 7-111 (246)
430 PF00290 Trp_syntA: Tryptophan 56.4 1.3E+02 0.0029 25.9 15.9 157 40-217 36-202 (259)
431 TIGR00290 MJ0570_dom MJ0570-re 55.8 1.2E+02 0.0027 25.4 10.2 98 110-217 4-115 (223)
432 COG0552 FtsY Signal recognitio 54.0 57 0.0012 29.2 6.9 109 113-225 149-272 (340)
433 TIGR02717 AcCoA-syn-alpha acet 53.2 86 0.0019 29.4 8.5 58 169-227 77-135 (447)
434 COG0156 BioF 7-keto-8-aminopel 53.0 1.9E+02 0.0041 26.7 13.7 130 79-224 48-183 (388)
435 TIGR00649 MG423 conserved hypo 52.1 1.2E+02 0.0026 28.1 9.3 96 108-214 287-401 (422)
436 PRK11070 ssDNA exonuclease Rec 51.2 2.1E+02 0.0045 27.9 10.9 100 113-222 52-160 (575)
437 COG1066 Sms Predicted ATP-depe 50.5 1.2E+02 0.0026 28.2 8.5 97 115-216 105-213 (456)
438 PF04748 Polysacc_deac_2: Dive 49.5 1.3E+02 0.0028 25.0 8.2 124 86-217 73-206 (213)
439 PF02571 CbiJ: Precorrin-6x re 49.5 1.5E+02 0.0032 25.4 8.7 99 106-210 129-248 (249)
440 PF13407 Peripla_BP_4: Peripla 48.9 34 0.00073 28.7 4.8 64 145-218 21-85 (257)
441 COG0352 ThiE Thiamine monophos 48.9 42 0.00091 28.0 5.1 52 170-223 24-75 (211)
442 COG0300 DltE Short-chain dehyd 48.6 1.3E+02 0.0028 26.1 8.2 97 108-207 7-113 (265)
443 PF00128 Alpha-amylase: Alpha 48.3 15 0.00033 31.8 2.6 29 199-227 51-79 (316)
444 PRK06372 translation initiatio 47.6 1.8E+02 0.004 25.0 10.6 99 108-218 87-190 (253)
445 PRK00077 eno enolase; Provisio 47.6 90 0.002 29.1 7.7 94 117-218 264-361 (425)
446 TIGR02012 tigrfam_recA protein 47.5 66 0.0014 28.7 6.4 95 129-223 81-193 (321)
447 PLN03244 alpha-amylase; Provis 47.5 30 0.00065 34.8 4.6 40 187-226 428-467 (872)
448 cd06569 GH20_Sm-chitobiase-lik 47.5 42 0.00092 31.4 5.5 26 192-217 89-114 (445)
449 PLN02955 8-amino-7-oxononanoat 47.3 2.6E+02 0.0056 26.6 13.0 131 79-224 111-261 (476)
450 cd01422 MGS Methylglyoxal synt 47.0 1.2E+02 0.0025 22.5 6.9 67 147-218 39-106 (115)
451 TIGR03649 ergot_EASG ergot alk 46.6 1.6E+02 0.0035 25.1 8.9 43 168-214 49-97 (285)
452 KOG2774 NAD dependent epimeras 46.3 1.9E+02 0.0041 24.7 9.1 74 144-228 93-166 (366)
453 PF11802 CENP-K: Centromere-as 46.2 1.1E+02 0.0023 26.5 7.1 70 87-156 171-253 (268)
454 COG0826 Collagenase and relate 46.1 62 0.0013 29.3 6.1 46 169-214 15-63 (347)
455 TIGR02026 BchE magnesium-proto 45.9 1.3E+02 0.0028 28.7 8.6 70 147-225 31-104 (497)
456 PF03652 UPF0081: Uncharacteri 45.8 41 0.00089 25.8 4.3 58 167-224 37-99 (135)
457 COG1606 ATP-utilizing enzymes 45.7 2E+02 0.0043 24.8 8.9 99 110-227 21-127 (269)
458 COG0505 CarA Carbamoylphosphat 45.1 83 0.0018 28.4 6.5 61 129-198 177-239 (368)
459 TIGR00064 ftsY signal recognit 45.0 2.1E+02 0.0045 24.8 11.5 101 117-223 86-203 (272)
460 TIGR01019 sucCoAalpha succinyl 44.9 2.2E+02 0.0047 25.0 10.3 52 169-226 76-127 (286)
461 PF01902 ATP_bind_4: ATP-bindi 44.7 1.9E+02 0.0041 24.2 10.1 98 110-217 4-115 (218)
462 PLN00191 enolase 44.6 1E+02 0.0022 29.0 7.5 99 115-220 296-395 (457)
463 COG0816 Predicted endonuclease 43.5 72 0.0016 24.7 5.3 56 168-223 40-99 (141)
464 TIGR00524 eIF-2B_rel eIF-2B al 43.4 2.3E+02 0.0051 25.0 10.3 104 106-219 117-237 (303)
465 PRK08535 translation initiatio 43.3 2.4E+02 0.0051 25.0 10.6 103 105-218 118-227 (310)
466 cd01018 ZntC Metal binding pro 42.8 2.2E+02 0.0047 24.4 12.1 73 130-217 169-244 (266)
467 TIGR00715 precor6x_red precorr 42.7 84 0.0018 27.0 6.2 94 109-217 2-96 (256)
468 cd06563 GH20_chitobiase-like T 42.7 28 0.0006 31.6 3.4 26 192-217 78-103 (357)
469 PF02310 B12-binding: B12 bind 42.4 1.3E+02 0.0028 21.8 7.4 67 145-222 21-90 (121)
470 TIGR01370 cysRS possible cyste 42.3 60 0.0013 28.9 5.3 109 88-215 191-299 (315)
471 TIGR02402 trehalose_TreZ malto 42.3 37 0.0008 32.8 4.3 31 196-226 156-186 (542)
472 PRK06463 fabG 3-ketoacyl-(acyl 42.1 2.1E+02 0.0044 24.0 10.3 31 107-137 7-37 (255)
473 PF01408 GFO_IDH_MocA: Oxidore 42.0 1.1E+02 0.0024 22.1 6.2 22 197-218 97-118 (120)
474 PF02571 CbiJ: Precorrin-6x re 41.2 1.1E+02 0.0023 26.3 6.6 92 109-217 2-97 (249)
475 PF02702 KdpD: Osmosensitive K 41.1 93 0.002 25.8 5.8 100 113-217 15-120 (211)
476 PF02603 Hpr_kinase_N: HPr Ser 41.1 44 0.00096 25.2 3.8 38 172-218 73-110 (127)
477 TIGR00511 ribulose_e2b2 ribose 40.9 2.6E+02 0.0055 24.7 10.6 116 88-218 100-222 (301)
478 PRK09441 cytoplasmic alpha-amy 40.3 31 0.00068 32.6 3.5 29 198-226 79-107 (479)
479 cd01121 Sms Sms (bacterial rad 39.4 2.8E+02 0.0061 25.3 9.4 122 84-217 66-204 (372)
480 PRK11889 flhF flagellar biosyn 39.1 3.3E+02 0.0071 25.5 10.6 97 115-223 253-363 (436)
481 PRK06483 dihydromonapterin red 39.0 2.2E+02 0.0047 23.4 9.7 52 109-160 4-55 (236)
482 COG0379 NadA Quinolinate synth 39.0 82 0.0018 27.9 5.5 80 109-193 141-221 (324)
483 PRK09354 recA recombinase A; P 38.8 1.3E+02 0.0029 27.2 7.0 95 129-223 86-198 (349)
484 PTZ00081 enolase; Provisional 38.6 1.4E+02 0.003 28.0 7.4 97 115-219 282-382 (439)
485 COG0365 Acs Acyl-coenzyme A sy 38.5 3.7E+02 0.0081 25.9 11.3 65 130-198 64-130 (528)
486 PRK14454 ribosomal RNA large s 38.5 2.9E+02 0.0063 24.9 9.2 50 168-218 267-320 (342)
487 PF01008 IF-2B: Initiation fac 38.1 1.6E+02 0.0035 25.4 7.4 118 88-219 92-216 (282)
488 cd06564 GH20_DspB_LnbB-like Gl 37.8 36 0.00079 30.3 3.4 26 192-217 74-99 (326)
489 PRK00109 Holliday junction res 37.6 1.5E+02 0.0032 22.8 6.3 57 168-224 41-101 (138)
490 PRK13111 trpA tryptophan synth 37.5 2.7E+02 0.0058 24.0 17.1 159 40-218 38-205 (258)
491 COG1088 RfbB dTDP-D-glucose 4, 37.4 3E+02 0.0065 24.5 10.1 114 109-230 2-138 (340)
492 COG2870 RfaE ADP-heptose synth 37.4 1E+02 0.0022 28.4 6.0 106 113-225 72-183 (467)
493 PRK10886 DnaA initiator-associ 37.2 2.3E+02 0.005 23.2 7.8 18 201-218 124-141 (196)
494 KOG2865 NADH:ubiquinone oxidor 37.2 2.1E+02 0.0045 25.4 7.5 87 122-214 76-169 (391)
495 PRK04210 phosphoenolpyruvate c 37.2 3.5E+02 0.0075 26.4 9.6 88 85-178 9-107 (601)
496 PRK05884 short chain dehydroge 36.7 2.4E+02 0.0052 23.2 8.5 51 109-159 2-52 (223)
497 PF10087 DUF2325: Uncharacteri 36.6 1.5E+02 0.0033 20.9 7.1 67 141-217 12-79 (97)
498 TIGR03815 CpaE_hom_Actino heli 36.4 3E+02 0.0065 24.2 11.8 55 168-223 161-215 (322)
499 PRK06182 short chain dehydroge 36.3 2.7E+02 0.0058 23.6 9.4 52 108-160 4-55 (273)
500 cd03313 enolase Enolase: Enola 36.1 87 0.0019 29.0 5.6 94 117-218 264-361 (408)
No 1
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=359.14 Aligned_cols=294 Identities=56% Similarity=1.021 Sum_probs=281.3
Q ss_pred cccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCC
Q 022213 7 NKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI 86 (301)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~ 86 (301)
..|++..+...+.....+++.++..++....-...+++|.|++|+|..+|.|++.+.+.+|+.++++.+....|+|+.|+
T Consensus 26 ~~W~f~gs~~a~ka~~~tir~i~~~l~~~~~p~~~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~ 105 (447)
T KOG0259|consen 26 SVWRFKGSDAAKKAASVTIRGILSALFDCCDPEKKKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGI 105 (447)
T ss_pred cceeeccchhhhhhccccHHHHHHHHhhcCCcccCceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCcccc
Confidence 34999999999999999999999988877655455699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCC
Q 022213 87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW 166 (301)
Q Consensus 87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~ 166 (301)
...|+++|+|+.+.....+++++|++|+|+++||+.++.+|.+||..|++|.|+|+-|...+...|+++.++++.++++|
T Consensus 106 ~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~w 185 (447)
T KOG0259|consen 106 LPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDW 185 (447)
T ss_pred HHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccc
Confidence 99999999999887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEE
Q 022213 167 EVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVIT 246 (301)
Q Consensus 167 ~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~ 246 (301)
.+|++.++.+++++|.++++.||+||+|.+++.+.+++|+++|+|++++||.||+|..+.|++.++.+++.+....+||.
T Consensus 186 eIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVit 265 (447)
T KOG0259|consen 186 EIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVIT 265 (447)
T ss_pred eechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 247 LGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 247 ~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
++|+||.|..||||+||++..++.+++.+...++.++++.+...+++++.|.|+
T Consensus 266 lggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~Al 319 (447)
T KOG0259|consen 266 LGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGAL 319 (447)
T ss_pred ecccccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHh
Confidence 999999999999999999999999999988888999999998889999999885
No 2
>PLN02187 rooty/superroot1
Probab=100.00 E-value=2.6e-49 Score=367.27 Aligned_cols=295 Identities=50% Similarity=0.970 Sum_probs=255.3
Q ss_pred cccccccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC
Q 022213 3 NGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~ 82 (301)
++....|.+..+...+.....+|+.+...+++......++++|+|++|+|+.+|.+.+++.+.+++.++++.+....|++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~ 106 (462)
T PLN02187 27 NGQSSVWRFGGSDKAAKASTVTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGP 106 (462)
T ss_pred cccccccccCcchhhhhhhhchHhhHHHHHHhhcccCCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC
Confidence 45556699999999999988999999988887776667899999999999988888889999999998887666668999
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC
Q 022213 83 NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP 162 (301)
Q Consensus 83 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 162 (301)
..|..+||+++|+|+.+.++..+++++|++|+|++++|..+++++++|||.|++++|+|+.|...++..|++++.+++.+
T Consensus 107 ~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~ 186 (462)
T PLN02187 107 GAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLP 186 (462)
T ss_pred CCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCcc
Confidence 89999999999999998888889999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213 163 ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV 242 (301)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~ 242 (301)
+++|.+|++.+++.++++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+....
T Consensus 187 ~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~ 266 (462)
T PLN02187 187 EKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIV 266 (462)
T ss_pred ccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCC
Confidence 67899999999999888899999999999999999999999999999999999999999999999765555666665556
Q ss_pred CEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh---hcccCCCcccccccC
Q 022213 243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC---LSIYSDIPTFIQVCE 300 (301)
Q Consensus 243 ~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~~ 300 (301)
++|+++||||.|++||+|+||++++++...+ ++++.+... .++..+++.+.|.++
T Consensus 267 ~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~---~~~~~~~~~~~~~~~~~~~s~~~Q~a~ 324 (462)
T PLN02187 267 PVLTLAGISKGWVVPGWKIGWIALNDPEGVF---ETTKVLQSIKQNLDVTPDPATIIQAAL 324 (462)
T ss_pred cEEEEecchhhcCCccceeEEEEecCchhHH---HHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 7999999999999999999999986543211 123344433 333345678888764
No 3
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-49 Score=358.48 Aligned_cols=247 Identities=30% Similarity=0.522 Sum_probs=223.5
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCC-EEEcCCHHHHH
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADD-VYVTLGCKQAV 120 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-i~~t~g~~~al 120 (301)
.++|+|++|+| ++++|+.+.+++.+++.++.. .|.+.+|+++||++|++++.++++..+++++ |++|+|+++|+
T Consensus 28 ~~vi~l~iG~P----d~~~p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al 102 (393)
T COG0436 28 EDVIDLSIGEP----DFPTPEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEAL 102 (393)
T ss_pred CCEEEeCCCCC----CCCCCHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHH
Confidence 58999999996 488999999999998886544 6778899999999999999999998888877 99999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC-CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
..++.++++|||+|++++|+|+.|...+...|.+++.+++..+ ++|.+|++.+++++++++|++++++||||||.++++
T Consensus 103 ~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~ 182 (393)
T COG0436 103 FLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSK 182 (393)
T ss_pred HHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCH
Confidence 9999999999999999999999999999999999999998655 489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI 278 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~ 278 (301)
+++++|+++|++|+++||+||+|..+.|++..+.++..+.. .+++|.++||||.|+++|||+||+++++. ++
T Consensus 183 ~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~-------~l 255 (393)
T COG0436 183 EELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPE-------EL 255 (393)
T ss_pred HHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChH-------HH
Confidence 99999999999999999999999999999865666666655 47899999999999999999999998642 47
Q ss_pred HHHHHhhhc-ccCCCcccccccC
Q 022213 279 IDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 279 ~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
++.+.+..+ ..+|+++++|.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~Q~aa 278 (393)
T COG0436 256 IAALRKLKSYLTSCAPTPAQYAA 278 (393)
T ss_pred HHHHHHHHHhcccCCCHHHHHHH
Confidence 788876544 5669999999764
No 4
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=100.00 E-value=9.3e-49 Score=361.16 Aligned_cols=295 Identities=62% Similarity=1.115 Sum_probs=254.5
Q ss_pred ccccccccchh-hhcCCcccHHHHHHHHHhhcccCC-CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC
Q 022213 6 ENKWGFEDKQE-HKAAPAVTVKTSLASIIDSVNKND-PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN 83 (301)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~-~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 83 (301)
...|.+..+.. .......+++.++..+.+.+..++ +.++|+|++|+|..+|.+++++.+.+++.++++......|++.
T Consensus 14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~ 93 (430)
T PLN00145 14 TARWRFERANAALAAAGALSIRAVLNRVKACVDAGGGPRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTC 93 (430)
T ss_pred cccccccCchhhHHHhcccchhhHHHHHHHhhhcccCCCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCC
Confidence 35699999985 444455568887776766665543 7899999999999988899999999999998876656689998
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC
Q 022213 84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE 163 (301)
Q Consensus 84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 163 (301)
.|..+||+++++++.+.++.++++++|++|+|+++++++++.++.++||+|++++|+|+.|...+...|.+++.+++.++
T Consensus 94 ~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~ 173 (430)
T PLN00145 94 VGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPE 173 (430)
T ss_pred ccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcc
Confidence 89999999999999988888899999999999999999999999999999999999999999999999999999998777
Q ss_pred CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213 164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP 243 (301)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~ 243 (301)
++|.+|++.+++.++++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+....+
T Consensus 174 ~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~ 253 (430)
T PLN00145 174 RGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAP 253 (430)
T ss_pred cCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCc
Confidence 78999999999999889999999999999999999999999999999999999999999999997666667766666678
Q ss_pred EEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 244 VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 244 vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
+|+++||||.|++||+|+||++++++..++...+++..++.+.+...+++++.|.++
T Consensus 254 vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~ 310 (430)
T PLN00145 254 VLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAI 310 (430)
T ss_pred EEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHH
Confidence 999999999999999999999987655443322345566666665557788888764
No 5
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=100.00 E-value=1.8e-46 Score=344.54 Aligned_cols=276 Identities=63% Similarity=1.097 Sum_probs=234.1
Q ss_pred HHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCC
Q 022213 25 VKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYK 104 (301)
Q Consensus 25 i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 104 (301)
|...+..+.+.+....++++|+|+.|+|+.+..+++|+.+.+++.++++......|++..|..+||+++++|+.+.++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~ 94 (409)
T PLN00143 15 IDDAVKFLKENFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQ 94 (409)
T ss_pred HHHHHHHHHHhcccCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCC
Confidence 66766666666666678999999999987555588999999999988876666679988999999999999999888888
Q ss_pred CCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213 105 LSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM 184 (301)
Q Consensus 105 ~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 184 (301)
+++++|++|+|+++++..++++++++||.|++++|+|..|...++..|.+++.+++..+++|.+|++.++++++++++.+
T Consensus 95 ~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 174 (409)
T PLN00143 95 LSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAM 174 (409)
T ss_pred CCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEE
Confidence 99999999999999999999999999999999999999999999999999999998666778899999999888888999
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213 185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL 264 (301)
Q Consensus 185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~ 264 (301)
++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+....++|+++||||.|++||+|+||+
T Consensus 175 ~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~ 254 (409)
T PLN00143 175 VIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWL 254 (409)
T ss_pred EEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEE
Confidence 99999999999999999999999999999999999999999987654555555655568999999999999999999999
Q ss_pred EeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 265 VTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
++++++..++..+.++.+++......+++.+.|.++
T Consensus 255 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~ 290 (409)
T PLN00143 255 VTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAI 290 (409)
T ss_pred EeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHH
Confidence 986553332111234555544433334577888764
No 6
>PLN02656 tyrosine transaminase
Probab=100.00 E-value=3.9e-46 Score=342.35 Aligned_cols=276 Identities=61% Similarity=1.107 Sum_probs=239.0
Q ss_pred HHHHHHHHHhhcc-cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCC
Q 022213 25 VKTSLASIIDSVN-KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPY 103 (301)
Q Consensus 25 i~~~~~~~~~~~~-~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~ 103 (301)
|+.++..+++.+. +..+.++|+|+.|+|+..+.+++|+.+.+++.+++.......|++..|..+||+++++++.+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~ 92 (409)
T PLN02656 13 IKGILSLLMESIDDEENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPY 92 (409)
T ss_pred hhhHHHHHHHhccccccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 7777776666663 346789999999999866668889999999998888666668999899999999999999988888
Q ss_pred CCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213 104 KLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA 183 (301)
Q Consensus 104 ~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (301)
.+++++|++|+|+++++..++.+++++||+|++++|+|..|....+..|++++.+++..++++.+|++.+++.+++++++
T Consensus 93 ~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~ 172 (409)
T PLN02656 93 KLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVA 172 (409)
T ss_pred CCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceE
Confidence 89999999999999999999999999999999999999999888888999999999876667889999999988888999
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213 184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW 263 (301)
Q Consensus 184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~ 263 (301)
+++++||||||.+++.+++++|+++|++++++||+|++|.++.|++..+.++..++...++|+++||||.|++||+|+||
T Consensus 173 v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~ 252 (409)
T PLN02656 173 LVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGW 252 (409)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEE
Confidence 99999999999999999999999999999999999999999999765555665565566899999999999999999999
Q ss_pred EEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 264 LVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
++++++...+.+++++++++.......+++.++|.++
T Consensus 253 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~ 289 (409)
T PLN02656 253 FVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAV 289 (409)
T ss_pred EEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 9997654333334688888876554456788888764
No 7
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=100.00 E-value=2.3e-45 Score=346.21 Aligned_cols=285 Identities=22% Similarity=0.405 Sum_probs=237.7
Q ss_pred cccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHH
Q 022213 9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPP 88 (301)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~ 88 (301)
|.+..+.++.....+.+..+.+.+ +.+ ++.+.++|+|+.|+|+.+ .+++|+.+.+++.+.+.. ...|++..|..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~g~~~i~l~~G~p~~~-~~~~p~~~~~~~~~~~~~--~~~Y~~~~G~~~ 189 (517)
T PRK13355 115 RTFKKSHKLDNVLYDVRGPVVDEA-NRM-EAAGTHILKLNIGNPAPF-GFRTPDEVVYDMAQQLTD--TEGYSDSKGLFS 189 (517)
T ss_pred cCCChhHHhhccCccHHHHHHHHH-HHH-HHcCCCeEEecCcCCCcC-CCCCCHHHHHHHHHHhhc--CCCCCCCcChHH
Confidence 667788888888887666665533 333 335789999999999754 367788899998887753 347999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213 89 ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV 168 (301)
Q Consensus 89 lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 168 (301)
||++|++++.++++.++++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|.+++.++++++++|.+
T Consensus 190 lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~ 269 (517)
T PRK13355 190 ARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYP 269 (517)
T ss_pred HHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCC
Confidence 99999999987666678999999999999999999999999999999999999999999999999999999877778999
Q ss_pred CHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEe
Q 022213 169 DLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLG 248 (301)
Q Consensus 169 ~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 248 (301)
|++++++.++++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+..+..+++++
T Consensus 270 d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~ 349 (517)
T PRK13355 270 DIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFS 349 (517)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEe
Confidence 99999999988999999999999999999999999999999999999999999999999765566666665545678899
Q ss_pred cCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 249 s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
||||.|+++|+|+||++++.+..+. ++++..+........+++.++|.++
T Consensus 350 S~SK~~~~~G~RiG~~i~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~q~a~ 399 (517)
T PRK13355 350 GLSKSHMIAGYRIGWMILSGNKRIA--KDYIEGLNMLANMRLCSNVPAQSIV 399 (517)
T ss_pred cchhhccCcccceEEEEeeCchhhH--HHHHHHHHHHhcCcCCcChHHHHHH
Confidence 9999999999999999986543211 1245555444444457788888763
No 8
>PLN02368 alanine transaminase
Probab=100.00 E-value=8.3e-45 Score=331.40 Aligned_cols=282 Identities=22% Similarity=0.355 Sum_probs=225.7
Q ss_pred ccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCC----CCC----------------------CChHHHH
Q 022213 12 EDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAF----PCF----------------------RTAVEAE 65 (301)
Q Consensus 12 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~----p~~----------------------~~~~~~~ 65 (301)
.++.+++..+.+.+..+...... + ++.+.++|+|++|+|+.. .++ .+++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~-~-~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~ 87 (407)
T PLN02368 10 SLNENVKKCQYAVRGELYLRASE-L-QKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIA 87 (407)
T ss_pred hcCHHHHhhhhhcCCHHHHHHHH-H-HHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHH
Confidence 45566667777766666543332 2 234789999999998621 012 2556666
Q ss_pred HHHHHHHh-cCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCCcc
Q 022213 66 DAIVDAVR-SGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRPGWPY 143 (301)
Q Consensus 66 ~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~ 143 (301)
+++..... ......|++..|.++||+++++|+.+++|..+++++|++|+|+++++..++++++ ++||.|++++|+|+.
T Consensus 88 ~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~ 167 (407)
T PLN02368 88 RAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPL 167 (407)
T ss_pred HHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCcc
Confidence 66544222 2345689999999999999999999888888899999999999999999999997 799999999999999
Q ss_pred hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 144 YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 144 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
|...++..|.+++.+++..+++|++|++.+++.+++ +++++++++||||||.+++.+++++|+++|++|+++||
T Consensus 168 y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II 247 (407)
T PLN02368 168 YSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLL 247 (407)
T ss_pred HHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999987777889999999998863 57889999999999999999999999999999999999
Q ss_pred EccCCcccccCCC-CCCCcccc----C----CCCCEEEEecCcccC-CCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 218 ADEVYGHLTFGSI-PYTPMGLF----G----SIVPVITLGSISKRW-LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 218 ~D~~y~~~~~~~~-~~~~~~~~----~----~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
+||+|.++.|++. .+.++..+ + ...++|+++||||.| ++||+|+||+++.+. ++++++++++...
T Consensus 248 ~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~-----~~~li~~~~~~~~ 322 (407)
T PLN02368 248 GDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI-----PPKTVEEIYKVAS 322 (407)
T ss_pred EEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCC-----CHHHHHHHHHHhc
Confidence 9999999999763 34443222 1 235899999999998 899999999996321 1357888877654
Q ss_pred ccCCCcccccccC
Q 022213 288 IYSDIPTFIQVCE 300 (301)
Q Consensus 288 ~~~~~~~~~q~~~ 300 (301)
...++++++|.++
T Consensus 323 ~~~~~~~~~Q~aa 335 (407)
T PLN02368 323 IALSPNVSGQIFM 335 (407)
T ss_pred ccCCCCcHHHHHH
Confidence 4567888999764
No 9
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=312.85 Aligned_cols=242 Identities=28% Similarity=0.426 Sum_probs=215.2
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHH
Q 022213 47 LGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILS 125 (301)
Q Consensus 47 l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~ 125 (301)
|+.|.| ++++|..+.+++++++++...++|.+..|+++|+++|++.+...+|....++ +|++|.|+.++|..++.
T Consensus 36 LgqGfp----~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~ 111 (420)
T KOG0257|consen 36 LGQGFP----DFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALL 111 (420)
T ss_pred ccCCCC----CCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHH
Confidence 999996 4889999999999999877788999999999999999999999887766555 69999999999999999
Q ss_pred HhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC------CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 126 VLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL------PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 126 ~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+++++||+|++.+|.|..|...++..|..+++++.. ...+|.+|.++++..+.+++|++++|+||||||.+.++
T Consensus 112 ~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsR 191 (420)
T KOG0257|consen 112 GLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSR 191 (420)
T ss_pred HHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCH
Confidence 999999999999999999999999999999999987 45678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC-CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG-SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI 278 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~ 278 (301)
++|++|+++|++||+++|.||+|..+.|++.....+..+. ..+++|.++|+||+|++.|||+||++++. .+
T Consensus 192 eeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~--------~L 263 (420)
T KOG0257|consen 192 EELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPK--------HL 263 (420)
T ss_pred HHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechH--------Hh
Confidence 9999999999999999999999999999987666666653 34689999999999999999999999833 36
Q ss_pred HHHHHhhh-cccCCCcccccccC
Q 022213 279 IDSIKDCL-SIYSDIPTFIQVCE 300 (301)
Q Consensus 279 ~~~~~~~~-~~~~~~~~~~q~~~ 300 (301)
...++... +.....+++.|.|.
T Consensus 264 ~~~~~~vh~~~~~~~~Tp~q~A~ 286 (420)
T KOG0257|consen 264 YSALFPVHQNFVFTCPTPIQEAS 286 (420)
T ss_pred hhhHHHHhhccccccCcHHHHHH
Confidence 66666663 45556677788764
No 10
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=100.00 E-value=2.1e-43 Score=324.64 Aligned_cols=287 Identities=30% Similarity=0.604 Sum_probs=234.7
Q ss_pred ccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCH
Q 022213 8 KWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIP 87 (301)
Q Consensus 8 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~ 87 (301)
.|+..-+.+.+.. ..++.....++.. ...++++|+|+.|+|...+++.+++.+.+++.+.++......|+++.|..
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~ 78 (412)
T PTZ00433 3 FWDVSMSKHAGRV-FNPLRTVTDNAKP---SPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSP 78 (412)
T ss_pred cccccccHHHHhh-hccHHHHHHhhcc---CCCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcH
Confidence 4776666655553 3334444433322 23588999999999875444677889999998888765566899989999
Q ss_pred HHHHHHHHHHhhhC------CCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC
Q 022213 88 PARRAIADYLSRDL------PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL 161 (301)
Q Consensus 88 ~lr~~ia~~l~~~~------~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 161 (301)
+||+++++++.+.+ +..+++++|++|+|+++++..++++++++||+|+++.|+|..+...++..|++++.++++
T Consensus 79 ~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 158 (412)
T PTZ00433 79 EAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCR 158 (412)
T ss_pred HHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecC
Confidence 99999999998743 456889999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
.++++++|++++++.++++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+...
T Consensus 159 ~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 238 (412)
T PTZ00433 159 PEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTT 238 (412)
T ss_pred ccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCC
Confidence 66678899999999888889999999999999999999999999999999999999999999999876555556666555
Q ss_pred CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
.++|+++||||.|++||+|+||++++++... .+++++.++.......+++.++|.++
T Consensus 239 ~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~q~a~ 295 (412)
T PTZ00433 239 VPRVILGGTAKNLVVPGWRLGWLLLVDPHGN--GGDFLDGMKRLGMLVCGPCSVVQAAL 295 (412)
T ss_pred CceEEEccchhhcCCCCeeEEEEEEeCCccc--HHHHHHHHHHHhhccCCCChHHHHHH
Confidence 5689999999999999999999998543211 13477777766543456888888754
No 11
>PRK06855 aminotransferase; Validated
Probab=100.00 E-value=1.8e-43 Score=326.68 Aligned_cols=259 Identities=25% Similarity=0.351 Sum_probs=212.1
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA 119 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a 119 (301)
.+.++++|+.|+|..+ ++++|+.+.+++.+.+......+|++..|.++||+++++|+.+.+++.+++++|++|+|++++
T Consensus 30 ~g~~~~~~~~G~p~~~-~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~a 108 (433)
T PRK06855 30 LGVKITWENIGDPIAK-GEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDA 108 (433)
T ss_pred ccccccccccCCCccc-CCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHH
Confidence 4678999999998543 478889999998888765556689999999999999999999988888999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHH-HhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEEEcCCCCCcccC
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIA-QRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMVIINPGNPCGNV 196 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~ 196 (301)
+..++. ++++||.|++++|+|+.|.... ...|++++.++++.+++|.+|+++|++.++. +++++++++||||||.+
T Consensus 109 l~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~ 187 (433)
T PRK06855 109 IAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAV 187 (433)
T ss_pred HHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcC
Confidence 999985 7899999999999999886543 3568888889887667888999999998863 56888999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213 197 FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS 276 (301)
Q Consensus 197 ~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~ 276 (301)
++.+++++|+++|++||++||+||+|.++.|++..+.++..+..+.++|+++||||.|++||+|+||+++++....-.-.
T Consensus 188 ~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~ 267 (433)
T PRK06855 188 YPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFK 267 (433)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHH
Confidence 99999999999999999999999999999997655666666554456899999999999999999999986421100001
Q ss_pred hHHHHHHhhhcccCCCcccccccC
Q 022213 277 GIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
.+++++........+++.+.|.++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~Q~a~ 291 (433)
T PRK06855 268 KYINSILNAKMIEVCSTTLPQMAI 291 (433)
T ss_pred HHHHHHHHhhccccCCChHHHHHH
Confidence 233444333333446788888764
No 12
>PLN00175 aminotransferase family protein; Provisional
Probab=100.00 E-value=6.2e-43 Score=321.20 Aligned_cols=266 Identities=25% Similarity=0.408 Sum_probs=226.0
Q ss_pred cchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q 022213 13 DKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA 92 (301)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 92 (301)
...+.+..+.+.++.+.+.. ...++|+|+.|+|+ +++++.+.+++.+.+++. ..+|++..|.++||++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~G~P~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~Lr~a 99 (413)
T PLN00175 32 VAKRLEKFKTTIFTQMSSLA-------IKHGAINLGQGFPN----FDGPDFVKEAAIQAIRDG-KNQYARGFGVPELNSA 99 (413)
T ss_pred hhHHhhcCCCCHHHHHHHHh-------hcCCeEecCCCCCC----CCCCHHHHHHHHHHHhcC-CCCcCCCCCCHHHHHH
Confidence 45556666666666665532 24589999999975 566788899998888753 4589999999999999
Q ss_pred HHHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHH
Q 022213 93 IADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLD 171 (301)
Q Consensus 93 ia~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 171 (301)
+++++.+.+++.++++ +|++|+|+++++..++.+++++||.|++++|+|..|...++..|.+++.+++.+++ +.++++
T Consensus 100 ia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~ 178 (413)
T PLN00175 100 IAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPD-FAVPED 178 (413)
T ss_pred HHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCccc-CCCCHH
Confidence 9999999888888887 79999999999999999999999999999999999999999999999999986543 789999
Q ss_pred HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecC
Q 022213 172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSI 250 (301)
Q Consensus 172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~ 250 (301)
.+++.++++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++. ..++..+.. .+++|+++||
T Consensus 179 ~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~~vi~i~Sf 257 (413)
T PLN00175 179 ELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYERTVTMNSL 257 (413)
T ss_pred HHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcCcEEEEecc
Confidence 99999988899999999999999999999999999999999999999999999998653 345555543 4689999999
Q ss_pred cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
||.|++||+|+||++++. +++..++...+ ...+++.+.|.++
T Consensus 258 SK~~~~~G~RiG~~v~~~--------~l~~~l~~~~~~~~~~~s~~~Q~a~ 300 (413)
T PLN00175 258 GKTFSLTGWKIGWAIAPP--------HLTWGVRQAHSFLTFATATPMQWAA 300 (413)
T ss_pred hhhccCcchheeeeEeCH--------HHHHHHHHHHhhccCCCCHHHHHHH
Confidence 999999999999999853 47787877654 3567888888764
No 13
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=100.00 E-value=8.4e-43 Score=319.84 Aligned_cols=286 Identities=37% Similarity=0.735 Sum_probs=230.1
Q ss_pred cccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHH
Q 022213 9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPP 88 (301)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~ 88 (301)
|...++.-.+-. ..+++.+...... . .+.++++|+|+.|+|..++.+++++.+.+++.+.+.+.....|++..|..+
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~ 77 (401)
T TIGR01264 1 WSVKPSDHSKNT-VNPIRAIVDNMKV-K-PNPEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALS 77 (401)
T ss_pred CCcChHHHHhhh-hhHHHHHHHHHHh-h-hhcCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHH
Confidence 444444433332 3346666653332 2 223578899999998644457788899999988887655567988899999
Q ss_pred HHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213 89 ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV 168 (301)
Q Consensus 89 lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 168 (301)
||+++++++.+. +..+++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.+++..++++++
T Consensus 78 lr~aia~~~~~~-~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~ 156 (401)
T TIGR01264 78 AREAIASYYHNP-DGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEI 156 (401)
T ss_pred HHHHHHHHHhhc-CCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCC
Confidence 999999999874 4468899999999999999999999999999999999999999999999999999998866667889
Q ss_pred CHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEe
Q 022213 169 DLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLG 248 (301)
Q Consensus 169 ~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 248 (301)
|++.+++.++++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++..+....++|+++
T Consensus 157 d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 236 (401)
T TIGR01264 157 DLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCG 236 (401)
T ss_pred CHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEc
Confidence 99999998887889999999999999999999999999999999999999999999998765556666665555699999
Q ss_pred cCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 249 s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
||||.|++||+|+||++++++...+ .++++.++...+...+++.+.|.++
T Consensus 237 SfSK~~~~~GlRiG~iv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~q~a~ 286 (401)
T TIGR01264 237 GLAKRWLVPGWRLGWIIIHDRRGIL--RDIRDGLVKLSQRILGPCTIVQGAL 286 (401)
T ss_pred cCcccCCCccceEEEEEecCcchhH--HHHHHHHHHHhhccCCCCcHHHHHH
Confidence 9999999999999999987542111 2355566555433345677888764
No 14
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=100.00 E-value=7.2e-43 Score=318.99 Aligned_cols=236 Identities=18% Similarity=0.276 Sum_probs=207.3
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQ 118 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~ 118 (301)
.+.++|+|+.|+|. +++++.+.+++.+.+......+|++..|..+||+++|+|+.+.+|+.++++ +|++|+|+++
T Consensus 28 ~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~ 103 (388)
T PRK07366 28 AGKELIDLSLGSSD----LPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQE 103 (388)
T ss_pred cCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHH
Confidence 47789999999964 667788999998887655556799889999999999999998888889998 6999999999
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213 119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~ 198 (301)
++..++++++++||.|++++|+|..|...++..|.+++.++++.++++..|++++++.+.++++++++++||||||.+++
T Consensus 104 al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s 183 (388)
T PRK07366 104 GTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAP 183 (388)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCC
Confidence 99999999999999999999999999999999999999999977777889999998877777899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCC-CCCccccCCC-CCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP-YTPMGLFGSI-VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS 276 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~-~~~~~~~~~~-~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~ 276 (301)
.+++++|+++|++|+++||+||+|.++.|++.. ..++..++.. .++|+++||||.|++||+|+||++++.
T Consensus 184 ~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~-------- 255 (388)
T PRK07366 184 LSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNA-------- 255 (388)
T ss_pred HHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCH--------
Confidence 999999999999999999999999999987643 4455555443 468999999999999999999999743
Q ss_pred hHHHHHHhhhc
Q 022213 277 GIIDSIKDCLS 287 (301)
Q Consensus 277 ~~~~~~~~~~~ 287 (301)
+++++++....
T Consensus 256 ~li~~l~~~~~ 266 (388)
T PRK07366 256 QLIQALRQVKA 266 (388)
T ss_pred HHHHHHHHHHh
Confidence 58888877654
No 15
>PRK08068 transaminase; Reviewed
Probab=100.00 E-value=1.8e-42 Score=316.49 Aligned_cols=272 Identities=24% Similarity=0.370 Sum_probs=222.4
Q ss_pred chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213 14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI 93 (301)
Q Consensus 14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 93 (301)
+.++.......+..+...+... ...++++|+|+.|+|. ++.++.+.+++.+.+.......|++..|.++||+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~ai 79 (389)
T PRK08068 6 SELLKQLPKQFFASLVAKVNKK--VAEGHDVINLGQGNPD----QPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAA 79 (389)
T ss_pred hhHhhhcCccHHHHHHHHHHHH--HhcCCCeEEecCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Confidence 3445556666666665543322 1235689999999874 555677888888887755566898889999999999
Q ss_pred HHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213 94 ADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA 172 (301)
Q Consensus 94 a~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 172 (301)
++|+.+.+|..++++ +|++|+|+++++..++.+++++||.|++++|+|..|...++..|++++.++++.++++.+|+++
T Consensus 80 a~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~ 159 (389)
T PRK08068 80 ADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTK 159 (389)
T ss_pred HHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHH
Confidence 999988888888888 8999999999999999999999999999999999999999999999999998766678899999
Q ss_pred HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc-cCCCCCEEEEecCc
Q 022213 173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL-FGSIVPVITLGSIS 251 (301)
Q Consensus 173 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~-~~~~~~vi~~~s~S 251 (301)
+++.+.++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++.. .+...++|+++|||
T Consensus 160 l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~S 239 (389)
T PRK08068 160 IPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLS 239 (389)
T ss_pred HHHhccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecch
Confidence 99988778899999999999999999999999999999999999999999998886543334322 23345789999999
Q ss_pred ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
|.|++||+|+||++++. +++++++.... +..+++.+.|.+
T Consensus 240 K~~g~~GlRiG~~~~~~--------~l~~~l~~~~~~~~~~~~~~~q~~ 280 (389)
T PRK08068 240 KTFNMAGWRVAFAVGNE--------SVIEAINLLQDHLFVSLFGAIQDA 280 (389)
T ss_pred hccCCccceeEeEecCH--------HHHHHHHHHHhhccCCCChHHHHH
Confidence 99999999999999733 58888877654 233444455654
No 16
>PRK07681 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.8e-42 Score=317.35 Aligned_cols=271 Identities=21% Similarity=0.295 Sum_probs=223.6
Q ss_pred hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213 15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA 94 (301)
Q Consensus 15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 94 (301)
.+.....++.+..+...+.. . ...+.++|+|+.|+|. +++++.+.+++.+.+.......|++ .|..+||++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~y~~-~G~~~lr~aia 79 (399)
T PRK07681 7 TRMKAFQSSIFSELGAYKKE-K-IAAGHKMIDLSIGNPD----MPPADFVREEMVHTANQKESYGYTL-SGIQEFHEAVT 79 (399)
T ss_pred HHHhhcCccHHHHHHHHHHH-h-hhcCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhccccCCCCC-CCcHHHHHHHH
Confidence 34444555666666554322 1 2246789999999964 5667888888888776433334553 79999999999
Q ss_pred HHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213 95 DYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV 173 (301)
Q Consensus 95 ~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l 173 (301)
+|+.+.++..+++ ++|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.++++.+++|.+|++.+
T Consensus 80 ~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l 159 (399)
T PRK07681 80 EYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELI 159 (399)
T ss_pred HHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHH
Confidence 9999888888898 899999999999999999999999999999999999999999999999999997777788999999
Q ss_pred HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcc
Q 022213 174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISK 252 (301)
Q Consensus 174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK 252 (301)
++.+.++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++....++..++. .+++|+++||||
T Consensus 160 ~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 239 (399)
T PRK07681 160 PEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSK 239 (399)
T ss_pred HHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeeccc
Confidence 9888778899999999999999999999999999999999999999999999987655555555443 357899999999
Q ss_pred cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
.|++||+|+||++++. +++++++.... ...+++.+.|.++
T Consensus 240 ~~~~~GlRiG~~i~~~--------~l~~~~~~~~~~~~~~~s~~~q~~~ 280 (399)
T PRK07681 240 SYSLAGSRIGYMIGNE--------EIVRALTQFKSNTDYGVFLPIQKAA 280 (399)
T ss_pred ccCCccceeEEEecCH--------HHHHHHHHHHhhcccCCCHHHHHHH
Confidence 9999999999998743 48888877654 3456777887653
No 17
>PRK06207 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.4e-42 Score=318.28 Aligned_cols=270 Identities=22% Similarity=0.309 Sum_probs=222.2
Q ss_pred CCcccHHHHHHHHHhhcccC-CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHh
Q 022213 20 APAVTVKTSLASIIDSVNKN-DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLS 98 (301)
Q Consensus 20 ~~~~~i~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~ 98 (301)
++..++++....+.+.+.-. -+.++|+|+.|+|+. +++++.+.+++.+.+.......|++..|.++||+++++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~---~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~ 92 (405)
T PRK06207 16 APGQEVRQSAAGLEALLRGEPLPGRPVDFSHGDVDA---HEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLA 92 (405)
T ss_pred CCcHHHHhhhhhhhhhhcCCcCCCCceecCCcCCCC---CCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHH
Confidence 34445555555554444322 357789999999862 35566778888887765555679998999999999999999
Q ss_pred hhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC---CCCCCCCCHHHHH
Q 022213 99 RDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL---PERNWEVDLDAVE 174 (301)
Q Consensus 99 ~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~l~ 174 (301)
+.+|..+++ ++|++|+|++++++.++++++++||+|++++|+|+.+...++..|.+++.++++ .+.++++|++.++
T Consensus 93 ~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~ 172 (405)
T PRK06207 93 AFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLE 172 (405)
T ss_pred HHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHH
Confidence 988888888 899999999999999999999999999999999999999999999999999875 2346789999999
Q ss_pred hhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCccc
Q 022213 175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKR 253 (301)
Q Consensus 175 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~ 253 (301)
+.++++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+.. .+++|+++||||.
T Consensus 173 ~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~ 252 (405)
T PRK06207 173 EAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKT 252 (405)
T ss_pred HhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhh
Confidence 998888899999999999999999999999999999999999999999999987655445544432 4689999999999
Q ss_pred CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
|++||+|+||++++. +++++++.... ...+.+.+.|.++
T Consensus 253 ~~lpGlRiG~ii~~~--------~l~~~~~~~~~~~~~~~~~~~q~a~ 292 (405)
T PRK06207 253 ESLSGYRLGVAFGSP--------AIIDRMEKLQAIVSLRAAGYSQAVL 292 (405)
T ss_pred ccCcccceEEEEcCH--------HHHHHHHHHHhHhccCCCHHHHHHH
Confidence 999999999998743 47788877654 3445666777654
No 18
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=100.00 E-value=2.2e-42 Score=317.10 Aligned_cols=276 Identities=51% Similarity=0.950 Sum_probs=230.6
Q ss_pred cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhC
Q 022213 22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101 (301)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~ 101 (301)
..+|+.+...+.+- ..++.++|+|+.|+|...|.+++++.+.+++.+.+.......|++..|..++|+++++++...+
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~ 90 (403)
T TIGR01265 13 VNPIRAIVDNLKVK--PNPEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDL 90 (403)
T ss_pred HHHHHHHHHHHHHH--HhcCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhc
Confidence 34555555433321 2246899999999998777889999999999988876555579888999999999999998877
Q ss_pred CCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCc
Q 022213 102 PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT 181 (301)
Q Consensus 102 ~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (301)
+..+++++|++|+|+++++..++++++++||+|+++.|+|..+...++..|.+++.+++..++++.+|++.+++.+++++
T Consensus 91 ~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 170 (403)
T TIGR01265 91 PGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKT 170 (403)
T ss_pred CCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCc
Confidence 77788999999999999999999999999999999999999998899999999999988666678899999999888889
Q ss_pred cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213 182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF 261 (301)
Q Consensus 182 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv 261 (301)
+++++++|+||||.+++.+++++|+++|+++|+++|+|++|.++.+++..+.++..+....++|+++||||.|++||+|+
T Consensus 171 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRi 250 (403)
T TIGR01265 171 VAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRL 250 (403)
T ss_pred cEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceE
Confidence 99999999999999999999999999999999999999999999987655566666666667999999999999999999
Q ss_pred EEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 262 GWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 262 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
||+++++++.++ .+++++.++...+...+++.+.|.++
T Consensus 251 G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~ 288 (403)
T TIGR01265 251 GWIIIHDPHGIF-RDTVLQGLKNLLQRILGPATIVQGAL 288 (403)
T ss_pred EEEEEeCchhhh-HHHHHHHHHHHhhhhcCCChHHHHHH
Confidence 999986543222 11245556555543456788888764
No 19
>PRK05942 aspartate aminotransferase; Provisional
Probab=100.00 E-value=2.3e-42 Score=316.20 Aligned_cols=281 Identities=22% Similarity=0.340 Sum_probs=224.2
Q ss_pred cccccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCC
Q 022213 5 AENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNS 84 (301)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 84 (301)
|+-.|- ..+.+.+.........+.+.+ ... ++.++++|+|+.|+|. +++|..+.+++.+.+.......|++..
T Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-~~~g~~~i~l~~g~p~----~~~p~~~~~~~~~~~~~~~~~~Y~~~~ 73 (394)
T PRK05942 1 MSLDWI-TPADRLQALPPYVFARLDELK-ARA-REQGLDLIDLGMGNPD----GAAPQPVIEAAIAALADPQNHGYPPFE 73 (394)
T ss_pred CCCccc-chhhhhccCCCcHHHHHHHHH-HHH-HhcCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhCCCCccCCCCC
Confidence 345673 444555555554333333211 111 2346789999999875 445666777776666544456899999
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCC-EEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADD-VYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE 163 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~-i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 163 (301)
|.++||+++++|+.+.++..+++++ |++|+|+++++..++.+++++||+|++++|+|..+...+...|.+++.++++.+
T Consensus 74 G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~ 153 (394)
T PRK05942 74 GTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPE 153 (394)
T ss_pred CCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCc
Confidence 9999999999999987787788884 899999999999999999999999999999999998888899999999998766
Q ss_pred CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CC
Q 022213 164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IV 242 (301)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~ 242 (301)
++|.+|++++++.+.++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++....++..+.. ..
T Consensus 154 ~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~ 233 (394)
T PRK05942 154 NDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKD 233 (394)
T ss_pred cCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccc
Confidence 77889999999988888999999999999999999999999999999999999999999999987655555554543 34
Q ss_pred CEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 243 ~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
.+|+++||||.|++||+|+||++++. +++++++.... ...+++.++|.++
T Consensus 234 ~~i~~~SfSK~~~~~GlRiG~i~~~~--------~l~~~l~~~~~~~~~~~~~~~q~~~ 284 (394)
T PRK05942 234 IGVEFHTLSKTYNMAGWRVGFVVGNR--------HIIQGLRTLKTNLDYGIFSALQKAA 284 (394)
T ss_pred cEEEEecchhccCChhhheeeeecCH--------HHHHHHHHHHhhcccCCCHHHHHHH
Confidence 57999999999999999999999743 47888877654 3445677777653
No 20
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=100.00 E-value=1.7e-42 Score=317.23 Aligned_cols=268 Identities=23% Similarity=0.372 Sum_probs=221.0
Q ss_pred hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHH
Q 022213 17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADY 96 (301)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 96 (301)
+...+.+.+..+.+.+ +.+....++++|+|+.|+|. +++++.+.+++.+.+. ....|++..|..+||++++++
T Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~ 77 (396)
T PRK09147 5 LDRLQPYPFEKLRALF-AGVTPPADLPPISLSIGEPK----HPTPAFIKDALAANLD--GLASYPTTAGLPALREAIAAW 77 (396)
T ss_pred hhcCCcchHHHHHHHH-HhhhhccCCCeEecCCCCCC----CCCCHHHHHHHHHHhh--hhcCCCCCCCCHHHHHHHHHH
Confidence 4456666776666543 22323357899999999974 5667888888887764 456899989999999999999
Q ss_pred HhhhCCCC-CCCC-CEEEcCCHHHHHHHHHHHhcCC---CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHH
Q 022213 97 LSRDLPYK-LSAD-DVYVTLGCKQAVEVILSVLARP---GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLD 171 (301)
Q Consensus 97 l~~~~~~~-~~~~-~i~~t~g~~~al~~~~~~l~~~---gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 171 (301)
+.+.+|.. ++++ +|++|+|+++++..++++++++ ||.|++++|+|..|...++..|.+++.++++.+++|.+|++
T Consensus 78 ~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~ 157 (396)
T PRK09147 78 LERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFD 157 (396)
T ss_pred HHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHH
Confidence 99888887 8885 8999999999999999999999 89999999999999999999999999999977777899999
Q ss_pred HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCC-CCC-cc---ccC--CCCCE
Q 022213 172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP-YTP-MG---LFG--SIVPV 244 (301)
Q Consensus 172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~-~~~-~~---~~~--~~~~v 244 (301)
.+++.+.++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++.. +.+ +. ..+ ..+++
T Consensus 158 ~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (396)
T PRK09147 158 AVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRL 237 (396)
T ss_pred HHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccE
Confidence 998877778999999999999999999999999999999999999999999999886531 111 11 111 23689
Q ss_pred EEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 245 ITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 245 i~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
|+++||||.|++||+|+||++++. +++++++.... ...+++.+.|.+
T Consensus 238 i~~~S~SK~~~~~GlRiG~~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~a 285 (396)
T PRK09147 238 VVFHSLSKRSNVPGLRSGFVAGDA--------ALLKKFLLYRTYHGCAMPPAVQAA 285 (396)
T ss_pred EEEeccccccCCccceeeeecCCH--------HHHHHHHHHhhhcccCCCHHHHHH
Confidence 999999999999999999999743 47777776654 244677778765
No 21
>PRK08636 aspartate aminotransferase; Provisional
Probab=100.00 E-value=3.5e-42 Score=315.76 Aligned_cols=276 Identities=20% Similarity=0.315 Sum_probs=221.9
Q ss_pred ccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHH
Q 022213 10 GFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPA 89 (301)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~l 89 (301)
++-..++.+..+...+..+...+. .+ +..+.++++|+.|+|. .+.|+.+.+++.+.+.......|++..|..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~l 76 (403)
T PRK08636 3 DEIEFNKIKRLPKYVFAEVNELKM-AA-RRAGEDIIDFSMGNPD----GPTPQHIIDKLCESAQKPKTHGYSVSKGIYKL 76 (403)
T ss_pred chHHHHHHHhCCccHHHHHHHHHH-HH-HhcCCCEEEcCCcCCC----CCCCHHHHHHHHHHhcCCccCCCCCCCCCHHH
Confidence 444455666667777766665332 22 2246789999999975 34466677777666554446689999999999
Q ss_pred HHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213 90 RRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV 168 (301)
Q Consensus 90 r~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 168 (301)
|+++|+|+.+.+++.++++ +|++|+|+++++..++++++++||.|++++|+|+.+...++..|.+++.++++.++++++
T Consensus 77 R~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 156 (403)
T PRK08636 77 RLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFEL 156 (403)
T ss_pred HHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCcc
Confidence 9999999998888888887 799999999999999999999999999999999999999999999999998865566789
Q ss_pred CHHHH----Hhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 169 DLDAV----EALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 169 ~~~~l----~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
|++.+ +++++ .+++.+++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++....++..++..
T Consensus 157 d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~ 236 (403)
T PRK08636 157 DEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGA 236 (403)
T ss_pred ChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCc
Confidence 97754 55553 367888999999999999999999999999999999999999999999876555566665443
Q ss_pred -CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCccccccc
Q 022213 242 -VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQVC 299 (301)
Q Consensus 242 -~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~ 299 (301)
+++|+++||||.|++||+|+||++++. ++++++++.... ..+++++.|.+
T Consensus 237 ~~~~i~~~S~SK~~~~~GlRiG~iv~~~--------~li~~~~~~~~~~~~~~~~~~q~~ 288 (403)
T PRK08636 237 KDVAVESYTLSKSYNMAGWRVGFVVGNK--------KLVGALKKIKSWLDYGMFTPIQVA 288 (403)
T ss_pred cccEEEEEecccccCCccceeeeeeCCH--------HHHHHHHHHHHHhcccCChHHHHH
Confidence 467889999999999999999998743 477777776542 34666777765
No 22
>PRK08960 hypothetical protein; Provisional
Probab=100.00 E-value=4.8e-42 Score=313.42 Aligned_cols=269 Identities=24% Similarity=0.383 Sum_probs=228.1
Q ss_pred chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213 14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI 93 (301)
Q Consensus 14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 93 (301)
..+++...+..+.++.+..... ...++++|+|+.|+|. +++|+.+.+++.+.+.... ..|.+..|.+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~----~~~~~~v~~a~~~~~~~~~-~~Y~~~~g~~~lr~~i 78 (387)
T PRK08960 6 SRRSRDIEPFHVMALLARANEL--EAAGHDVIHLEIGEPD----FTTAEPIVAAGQAALAAGH-TRYTAARGLPALREAI 78 (387)
T ss_pred hhHHHhCCchHHHHHHHHHHHH--HhcCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhcCC-CccCCCCCCHHHHHHH
Confidence 4556677788888877755432 2246789999999974 6678899999988887433 4798889999999999
Q ss_pred HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213 94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV 173 (301)
Q Consensus 94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l 173 (301)
++++.+.+|..+++++|++|+|+++++..++.+++++||+|++++|+|+.+...++..|.+++.++++.++++.+|++.+
T Consensus 79 a~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 158 (387)
T PRK08960 79 AGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALV 158 (387)
T ss_pred HHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHH
Confidence 99999888888999999999999999999999999999999999999999999999999999999987666788999999
Q ss_pred HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213 174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR 253 (301)
Q Consensus 174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~ 253 (301)
++.++++++.+++++||||||.+++.+++++|+++|++||+++|+||+|.++.|++. ..++... ..++|+++||||.
T Consensus 159 ~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~~~~--~~~vi~~~S~SK~ 235 (387)
T PRK08960 159 ERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AASVLEV--DDDAFVLNSFSKY 235 (387)
T ss_pred HHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCChhhc--cCCEEEEeecccc
Confidence 999888888999999999999999999999999999999999999999999988643 3333332 3579999999999
Q ss_pred CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
|+++|+|+||+++++ +++++++.... ...+++.+.|.++
T Consensus 236 ~g~~GlRiG~~~~~~--------~~~~~~~~~~~~~~~~~s~~~q~a~ 275 (387)
T PRK08960 236 FGMTGWRLGWLVAPP--------AAVPELEKLAQNLYISASTPAQHAA 275 (387)
T ss_pred cCCcccEEEEEEcCH--------HHHHHHHHHHhhhccCCCHHHHHHH
Confidence 999999999999854 47777777654 3557788888753
No 23
>PTZ00377 alanine aminotransferase; Provisional
Probab=100.00 E-value=3.2e-42 Score=322.29 Aligned_cols=284 Identities=21% Similarity=0.332 Sum_probs=224.6
Q ss_pred ccchhhhcCCcccHHHHHHH---HHhhcccC----CCCCeeeccCCCCCCCC------------CCCC------------
Q 022213 12 EDKQEHKAAPAVTVKTSLAS---IIDSVNKN----DPRPVVPLGYGDPTAFP------------CFRT------------ 60 (301)
Q Consensus 12 ~~~~~~~~~~~~~i~~~~~~---~~~~~~~~----~~~~~i~l~~g~p~~~p------------~~~~------------ 60 (301)
.++.++...+.+....+... +.+++.+. .+.++|+|++|+|+-.. .+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~ 88 (481)
T PTZ00377 9 DINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSL 88 (481)
T ss_pred ccCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCcccccc
Confidence 45566666666666554332 22212111 35799999999984100 0222
Q ss_pred -hHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEE
Q 022213 61 -AVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLL 136 (301)
Q Consensus 61 -~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~ 136 (301)
|..+.+++.++++.. ....|++..|.++||++|++++.+.+|+.+++++|++|+|+++++..++++++ ++||.|++
T Consensus 89 ~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv 168 (481)
T PTZ00377 89 FPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMI 168 (481)
T ss_pred CCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEE
Confidence 446777777666542 35679999999999999999999888888999999999999999999999998 79999999
Q ss_pred cCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 022213 137 PRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMAR 210 (301)
Q Consensus 137 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~ 210 (301)
+.|+|+.|...++..|.+++.++++.+++|.+|+++|++.+++ +++++++++||||||.+++.+++++|+++|+
T Consensus 169 ~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~ 248 (481)
T PTZ00377 169 PIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCY 248 (481)
T ss_pred CCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999988777899999999998864 6888899999999999999999999999999
Q ss_pred hCCCeEEEccCCcccccCC-CCCCCcc----ccCCC----CCEEEEecCccc-CCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 211 KLRVMVVADEVYGHLTFGS-IPYTPMG----LFGSI----VPVITLGSISKR-WLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 211 ~~~~~ii~D~~y~~~~~~~-~~~~~~~----~~~~~----~~vi~~~s~SK~-~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
+|+++||+||+|..+.|++ ..+.++. .+... .++|+++||||. +++||+|+||+++++.+ +++++
T Consensus 249 ~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p-----~~li~ 323 (481)
T PTZ00377 249 EKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIP-----PEVRE 323 (481)
T ss_pred HCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCC-----HHHHH
Confidence 9999999999999999853 3344432 22221 368999999997 58899999999874311 35888
Q ss_pred HHHhhhcccCCCcccccccC
Q 022213 281 SIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 281 ~~~~~~~~~~~~~~~~q~~~ 300 (301)
++.+......++++++|.++
T Consensus 324 ~l~~~~~~~~~~~~~~Q~a~ 343 (481)
T PTZ00377 324 QIYKLASINLCSNVVGQLMT 343 (481)
T ss_pred HHHHHhheecCCChHHHHHH
Confidence 88776654557888888764
No 24
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=100.00 E-value=8.2e-42 Score=311.54 Aligned_cols=249 Identities=27% Similarity=0.421 Sum_probs=214.1
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQ 118 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~ 118 (301)
.++++++|+.|+|. +++++.+.+++.+.+......+|++..|.++||+++++|+.+.++..++++ +|++|+|+++
T Consensus 27 ~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~ 102 (383)
T TIGR03540 27 EGVDVISLGIGDPD----LPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKE 102 (383)
T ss_pred cCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHH
Confidence 46899999999974 566788889988877655566899989999999999999998778777776 6999999999
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213 119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~ 198 (301)
++..+++.++++||.|++++|+|..+...++..|.+++.+++..++++.+|++++++.+.++++++++++||||||.+++
T Consensus 103 ~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~ 182 (383)
T TIGR03540 103 GIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAP 182 (383)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCC
Confidence 99999999999999999999999999999999999999999876667888999999888878999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchh
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG 277 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~ 277 (301)
.+++++|+++|++|++++|+||+|.++.|++....++..++. ..++|+++||||.|++||+|+||++++. +
T Consensus 183 ~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~--------~ 254 (383)
T TIGR03540 183 LKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNA--------D 254 (383)
T ss_pred HHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCH--------H
Confidence 999999999999999999999999999887655566655543 3578999999999999999999998743 4
Q ss_pred HHHHHHhhhc-ccCCCcccccccC
Q 022213 278 IIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 278 ~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
+++++..... ...+++.+.|.++
T Consensus 255 l~~~~~~~~~~~~~~~~~~~q~~~ 278 (383)
T TIGR03540 255 LIAGLGKVKTNVDSGVFQAIQYAA 278 (383)
T ss_pred HHHHHHHHHHhcccCCChHHHHHH
Confidence 7777776543 3445666777653
No 25
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=8.8e-42 Score=311.55 Aligned_cols=248 Identities=27% Similarity=0.421 Sum_probs=212.7
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQ 118 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~ 118 (301)
.++++|+|+.|+|. +++++.+.+++.+.+.......|++..|.++||+++++|+.+.+|..++++ +|++|+|+++
T Consensus 29 ~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~ 104 (385)
T PRK09276 29 RGVDVISLGIGDPD----LPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKE 104 (385)
T ss_pred cCCCEEEecCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence 36789999999964 566788899998887654456899988999999999999998888778887 5999999999
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213 119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~ 198 (301)
++..+++.++++||+|++++|+|..|...++..|.+++.+++..++++.+|++++++.+.++++++++++||||||.+++
T Consensus 105 ~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~ 184 (385)
T PRK09276 105 GIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVAD 184 (385)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999876667889999999888778999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchh
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG 277 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~ 277 (301)
.+++++|+++|++|+++||+||+|.++.+++....++..++. .+++|+++||||.|+++|+|+||++++. +
T Consensus 185 ~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~--------~ 256 (385)
T PRK09276 185 LEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNA--------D 256 (385)
T ss_pred HHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCH--------H
Confidence 999999999999999999999999999887655556555543 3568999999999999999999999743 4
Q ss_pred HHHHHHhhhc-ccCCCccccccc
Q 022213 278 IIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 278 ~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
+++++++... ...+++.+.|.+
T Consensus 257 l~~~~~~~~~~~~~~~~~~~q~~ 279 (385)
T PRK09276 257 LIAGLGKVKSNVDSGVFQAIQEA 279 (385)
T ss_pred HHHHHHHHHhhccCCCCHHHHHH
Confidence 7777776653 344556566654
No 26
>PRK06290 aspartate aminotransferase; Provisional
Probab=100.00 E-value=6.4e-42 Score=313.90 Aligned_cols=246 Identities=24% Similarity=0.369 Sum_probs=209.3
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCC-CCCC-CEEEcCCHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYK-LSAD-DVYVTLGCK 117 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~-~i~~t~g~~ 117 (301)
.+.++|+|+.|+|. +.+++.+.+++.+.+.......|++ .|..+||+++|+++.+.+|+. ++++ +|++|+|++
T Consensus 42 ~~~~~i~L~~g~p~----~~~~~~~~~~l~~~~~~~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~ 116 (410)
T PRK06290 42 PDMELIDMGVGEPD----EMADESVVEVLCEEAKKPENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSK 116 (410)
T ss_pred CCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHH
Confidence 46679999999974 5567788888887765444556876 899999999999999888887 8886 799999999
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCC
Q 022213 118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVF 197 (301)
Q Consensus 118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~ 197 (301)
+++..++++++++||.|+++.|+|..|...++..|.+++.++++.+.++.+|++.+++.+.++++++++++||||||.++
T Consensus 117 ~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~ 196 (410)
T PRK06290 117 PALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVA 196 (410)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCC
Confidence 99999999999999999999999999999999999999999997777788899999988887899999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213 198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS 276 (301)
Q Consensus 198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~ 276 (301)
+.+++++|+++|++|+++||+||+|.++.|++. +.++..+.. .+++|+++||||.|++||+|+||++++.
T Consensus 197 s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~-------- 267 (410)
T PRK06290 197 TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNE-------- 267 (410)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCCccccEEEEeechhhcCCchhheEeEEeCH--------
Confidence 999999999999999999999999999988653 334433332 3467999999999999999999999743
Q ss_pred hHHHHHHhhhc-ccCCCccccccc
Q 022213 277 GIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 277 ~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
+++++++.... ...+++.++|.+
T Consensus 268 ~l~~~l~~~~~~~~~~~~~~~q~a 291 (410)
T PRK06290 268 LIVKAFATVKDNNDSGQFIAIQKA 291 (410)
T ss_pred HHHHHHHHHHhccccCCcHHHHHH
Confidence 47777776654 344566677765
No 27
>PRK09265 aminotransferase AlaT; Validated
Probab=100.00 E-value=1e-41 Score=312.82 Aligned_cols=280 Identities=24% Similarity=0.411 Sum_probs=223.5
Q ss_pred chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213 14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI 93 (301)
Q Consensus 14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 93 (301)
+.++...+.+.+..+.+... .. +..++++|+|+.|+|..++ +++++.+.+++.+.+. ....|+++.|.++||+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~l~~g~p~~~~-~~~~~~i~~~~~~~~~--~~~~Y~~~~G~~~lr~~i 81 (404)
T PRK09265 7 SSKLENVCYDIRGPVLKEAK-RL-EEEGHKILKLNIGNPAPFG-FEAPDEILRDVIRNLP--TAQGYSDSKGLFSARKAI 81 (404)
T ss_pred hHHHHhcCcchhHHHHHHHH-HH-HHcCCCeEEecCCCCCcCC-CCCCHHHHHHHHHHhh--cCCCCCCCCCcHHHHHHH
Confidence 34444455554444444332 23 3457899999999987543 6677888888777654 345799999999999999
Q ss_pred HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213 94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV 173 (301)
Q Consensus 94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l 173 (301)
|+++.+....++++++|++|+|+++++..++++++++||+|++++|+|..+...++..|.+++.++++.+.++.+|++++
T Consensus 82 a~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l 161 (404)
T PRK09265 82 MQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDI 161 (404)
T ss_pred HHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHH
Confidence 99997654447889999999999999999999999999999999999999999999999999888876556678999999
Q ss_pred HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213 174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR 253 (301)
Q Consensus 174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~ 253 (301)
++.++++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++....++..+....++|+++||||.
T Consensus 162 ~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 241 (404)
T PRK09265 162 RSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKA 241 (404)
T ss_pred HHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhh
Confidence 99988889999999999999999999999999999999999999999999999876555666665555578999999999
Q ss_pred CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
|++||+|+||++++.+..+. +++++.++.......+++.++|.++
T Consensus 242 ~~~pGlRiG~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~q~~~ 286 (404)
T PRK09265 242 YRVAGFRVGWMVLSGPKKHA--KGYIEGLDMLASMRLCANVPAQHAI 286 (404)
T ss_pred ccCcccceEEEEEeCchHHH--HHHHHHHHHHhccccCCCcHHHHHH
Confidence 99999999999986443111 1244555443333456777888753
No 28
>PRK06348 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.5e-41 Score=309.72 Aligned_cols=266 Identities=23% Similarity=0.407 Sum_probs=218.7
Q ss_pred hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213 15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA 94 (301)
Q Consensus 15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 94 (301)
.+........++.+.+... ..+++|+|+.|+|. +++++.+.+++.+.... ....|+++.|..+||++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia 76 (384)
T PRK06348 8 KKYQQMEVNIMAEIATLAK------KFPDIIDLSLGDPD----LITDESIINAAFEDAKK-GHTRYTDSGGDVELIEEII 76 (384)
T ss_pred HHHhcCCccHHHHHHHHHH------hcCCcEEcCCCCCC----CCCCHHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHHH
Confidence 3444455555555554321 13578999999975 45566666655554433 3457999999999999999
Q ss_pred HHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHH
Q 022213 95 DYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVE 174 (301)
Q Consensus 95 ~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 174 (301)
+++.+.++..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.+++..++++.+|++.++
T Consensus 77 ~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 156 (384)
T PRK06348 77 KYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLE 156 (384)
T ss_pred HHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHH
Confidence 99998888889999999999999999999999999999999999999999999999999999988765667889999999
Q ss_pred hhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCccc
Q 022213 175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKR 253 (301)
Q Consensus 175 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~ 253 (301)
+.++++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++ ...++..+.. .+++|+++||||.
T Consensus 157 ~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~ 235 (384)
T PRK06348 157 ALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKD 235 (384)
T ss_pred HhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhc
Confidence 9888888999999999999999999999999999999999999999999998864 3344444442 4689999999999
Q ss_pred CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
|++||+|+||+++++ +++++++.... ...+++.+.|.++
T Consensus 236 ~~l~GlRiG~~v~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~ 275 (384)
T PRK06348 236 FAMTGWRIGYVIAPD--------YIIETAKIINEGICFSAPTISQRAA 275 (384)
T ss_pred cCCccccceeeecCH--------HHHHHHHHHHHhccCCCCHHHHHHH
Confidence 999999999999853 47777776654 3446788888764
No 29
>PRK09148 aminotransferase; Validated
Probab=100.00 E-value=1.8e-41 Score=311.17 Aligned_cols=272 Identities=22% Similarity=0.372 Sum_probs=217.3
Q ss_pred hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213 15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA 94 (301)
Q Consensus 15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 94 (301)
.++.......+..+.+ ....+ +..++++|+|+.|+|. +++++.+.+++.+.+......+|++..|..+||++++
T Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia 78 (405)
T PRK09148 5 HRIRRLPPYVFEQVNR-LKAAA-RAAGADIIDLGMGNPD----LPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQA 78 (405)
T ss_pred hhhhcCCccHHHHHHH-HHHHH-HhcCCCeEEcCCCCCC----CCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHH
Confidence 3344455555555533 22222 2346789999999974 5567788888887775545668999899999999999
Q ss_pred HHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213 95 DYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV 173 (301)
Q Consensus 95 ~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l 173 (301)
+++.+++|..++++ +|++|+|+++++..++++++++||.|++++|+|..+...++..|.+++.+++..+..+..++++.
T Consensus 79 ~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~ 158 (405)
T PRK09148 79 AYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERA 158 (405)
T ss_pred HHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHH
Confidence 99988778888887 89999999999999999999999999999999999988889999999999986655554555554
Q ss_pred HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcc
Q 022213 174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISK 252 (301)
Q Consensus 174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK 252 (301)
.+....+++.+++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..++. .+++|+++||||
T Consensus 159 ~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK 238 (405)
T PRK09148 159 VRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSK 238 (405)
T ss_pred HhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccc
Confidence 4434457889999999999999999999999999999999999999999999987655555555443 346789999999
Q ss_pred cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
.|++||+|+||++++. ++++++++... ...+++.++|.++
T Consensus 239 ~~~~pGlR~G~~v~~~--------~~i~~l~~~~~~~~~~~~~~~q~~~ 279 (405)
T PRK09148 239 TFSMAGWRMGFAVGNE--------RLIAALTRVKSYLDYGAFTPIQVAA 279 (405)
T ss_pred ccCCcchheeeeeCCH--------HHHHHHHHHHHHhccCCChHHHHHH
Confidence 9999999999999743 48888877654 3456777888764
No 30
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=100.00 E-value=2.9e-41 Score=308.83 Aligned_cols=266 Identities=24% Similarity=0.414 Sum_probs=217.3
Q ss_pred cCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHh
Q 022213 19 AAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLS 98 (301)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~ 98 (301)
..+.+.+.++.+.+. ......+.++|+|+.|+|. +++|+.+.+++.+.+. ....|+++.|.++||+++|+|+.
T Consensus 6 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~l~~~~p~----~~~~~~~~~a~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~ 78 (393)
T TIGR03538 6 RLQPYPFEKLAALLA-GVTPPASKPPIALSIGEPK----HPTPAFVLEALRENLH--GLSTYPTTKGLPELRQAIARWLE 78 (393)
T ss_pred hCCccHHHHHHHHHH-hhhhhcCCCeEEecCCCCC----CCCCHHHHHHHHHHhh--ccCCCCCCCCCHHHHHHHHHHHH
Confidence 345556666665432 2212246899999999974 5667889999887764 45689999999999999999999
Q ss_pred hhCCCC--CCCC-CEEEcCCHHHHHHHHHHHhcCCCCE--EEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213 99 RDLPYK--LSAD-DVYVTLGCKQAVEVILSVLARPGAN--VLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV 173 (301)
Q Consensus 99 ~~~~~~--~~~~-~i~~t~g~~~al~~~~~~l~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l 173 (301)
+.++.. ++++ +|++|+|+++++..++++++++||. |++++|+|..|...++..|++++.+++..+++|.+|++++
T Consensus 79 ~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 158 (393)
T TIGR03538 79 RRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAV 158 (393)
T ss_pred HhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHH
Confidence 877765 6775 7999999999999999999999986 9999999999999999999999999987677788999999
Q ss_pred HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC-CCCCc-cc---cC--CCCCEEE
Q 022213 174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI-PYTPM-GL---FG--SIVPVIT 246 (301)
Q Consensus 174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~-~~---~~--~~~~vi~ 246 (301)
++.+.++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. .+.+. .. .. ...++|+
T Consensus 159 ~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 238 (393)
T TIGR03538 159 PESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLV 238 (393)
T ss_pred HHHHhhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEE
Confidence 988877899999999999999999999999999999999999999999999988642 22221 11 11 2357999
Q ss_pred EecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 247 LGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 247 ~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
++||||.|++||+|+||++++. ++++++++... ...+++.+.|.+
T Consensus 239 i~S~SK~~~~~GlRvG~~i~~~--------~l~~~~~~~~~~~~~~~~~~~q~~ 284 (393)
T TIGR03538 239 FHSLSKRSNLPGLRSGFVAGDA--------EILKAFLRYRTYHGCAMPIPTQLA 284 (393)
T ss_pred EecchhhcCCcccceEEEecCH--------HHHHHHHHHHHhhccCcCHHHHHH
Confidence 9999999999999999998743 47777776654 344667777765
No 31
>PRK12414 putative aminotransferase; Provisional
Probab=100.00 E-value=7.2e-41 Score=305.25 Aligned_cols=246 Identities=24% Similarity=0.422 Sum_probs=211.5
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQA 119 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~a 119 (301)
.+++|+|+.|+|. +++++.+.+++.+.+... ..+|++..|..+||+++++++.+.+|...++ ++|++|+|++++
T Consensus 28 ~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~a 102 (384)
T PRK12414 28 QHDALNLSQGAPN----FAPDPALVEGVARAMRDG-HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEG 102 (384)
T ss_pred hCCeEEcCCCCCC----CCCCHHHHHHHHHHHHhC-CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHH
Confidence 4679999999974 566788889888877643 3579998999999999999999887877665 689999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+..++++++++||+|++++|+|..+...++..|.+++.++++. .++.+|++.+++.++++++++++++||||||.+++.
T Consensus 103 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~ 181 (384)
T PRK12414 103 LYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-EDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSA 181 (384)
T ss_pred HHHHHHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCc-cccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCH
Confidence 9999999999999999999999999999999999999998754 357799999999998889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI 278 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~ 278 (301)
+++++|+++|++|++++|+||+|.++.|++....++..+.. .+++|+++||||.|++||+|+||+++++ ++
T Consensus 182 ~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~--------~l 253 (384)
T PRK12414 182 ADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPA--------EL 253 (384)
T ss_pred HHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCH--------HH
Confidence 99999999999999999999999999987654445554433 4579999999999999999999999854 47
Q ss_pred HHHHHhhhc-ccCCCcccccccC
Q 022213 279 IDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 279 ~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
++++..... ...+++.+.|.++
T Consensus 254 ~~~l~~~~~~~~~~~s~~~q~a~ 276 (384)
T PRK12414 254 MDEIRKVHQFMVFSADTPMQHAF 276 (384)
T ss_pred HHHHHHHHhheecCCCcHHHHHH
Confidence 777777654 3457788888764
No 32
>PLN02231 alanine transaminase
Probab=100.00 E-value=7e-41 Score=314.40 Aligned_cols=265 Identities=21% Similarity=0.334 Sum_probs=213.7
Q ss_pred hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc--C-CCCCCCCCCCCHHHHHHH
Q 022213 17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS--G-KFNCYATNSGIPPARRAI 93 (301)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~--~-~~~~Y~~~~g~~~lr~~i 93 (301)
..+.++.-+++++..+ ..+++|+|+.+.+. |+. .+.+.+.+.+.. + ...+|+++.|.++||++|
T Consensus 111 ~~~~~~~~~r~v~~~~-------~~p~~i~~~~~~~~----fp~--~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaI 177 (534)
T PLN02231 111 LGQQPITFFREVLALC-------DHPSLLDKSETHGL----FSA--DAIERAWQILDQIPGRATGAYSHSQGIKGLRDAI 177 (534)
T ss_pred cCCCccHHHHHHHHhc-------cCCccCCCCCcccc----CCH--HHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHH
Confidence 3444555555555422 24689999866542 333 444444556654 2 366899999999999999
Q ss_pred HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC-CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213 94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA 172 (301)
Q Consensus 94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 172 (301)
|+|+.+++|..+++++|++|+|+++++..++++++. +||.|+++.|+|+.|...++..|.+++.++++.+++|++|+++
T Consensus 178 A~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~ 257 (534)
T PLN02231 178 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISE 257 (534)
T ss_pred HHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHH
Confidence 999999888899999999999999999999999984 8999999999999999999999999999999877789999999
Q ss_pred HHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccC-CCCCCCccccC------
Q 022213 173 VEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG-SIPYTPMGLFG------ 239 (301)
Q Consensus 173 l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~-~~~~~~~~~~~------ 239 (301)
|++.+++ ++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|+ +..+.++..+.
T Consensus 258 Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~ 337 (534)
T PLN02231 258 LKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYG 337 (534)
T ss_pred HHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccc
Confidence 9998754 5788999999999999999999999999999999999999999999995 34555554432
Q ss_pred -CCCCEEEEecCcccC-CCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCccccccc
Q 022213 240 -SIVPVITLGSISKRW-LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 240 -~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 299 (301)
.+.++|+++||||.+ ++||+|+||+++++.+ +++++++.+..+...|++.+.|.+
T Consensus 338 ~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~-----~~l~~~l~k~~~~~~~s~~~~Q~~ 394 (534)
T PLN02231 338 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFT-----SDVREQIYKVASVNLCSNISGQIL 394 (534)
T ss_pred cCCceEEEEeccCcccccCCccceEEEEEecCC-----HHHHHHHHHHHhhhcCCChHHHHH
Confidence 123689999999975 7899999999875421 357787777655556777777764
No 33
>PRK07550 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=302.00 Aligned_cols=272 Identities=23% Similarity=0.260 Sum_probs=226.3
Q ss_pred hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213 15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA 94 (301)
Q Consensus 15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 94 (301)
++...+.+..++++.+.+.. + ++.+.+.|+|+.|+|. +++++.+.+++.+.+.......|++..|.++||++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia 77 (386)
T PRK07550 4 PLIAALFPPPIPEVRAWLAG-Y-DGADGPLIDLSQAVPG----YPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYA 77 (386)
T ss_pred hhhhhcCChHHHHHHHHHHH-H-hhcCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHH
Confidence 45555667788888775432 3 2346789999999975 4557788888888775445567988889999999999
Q ss_pred HHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHH
Q 022213 95 DYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVE 174 (301)
Q Consensus 95 ~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 174 (301)
+++.+.++..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++++.++++.+|++.++
T Consensus 78 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~ 157 (386)
T PRK07550 78 AHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAE 157 (386)
T ss_pred HHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHH
Confidence 99998888888999999999999999999999999999999999999999999999999999999876667788999999
Q ss_pred hhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc-CCCCCEEEEecCccc
Q 022213 175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVITLGSISKR 253 (301)
Q Consensus 175 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~~~vi~~~s~SK~ 253 (301)
+.++++++++++++||||||.+++.+++++|+++|+++|++||+|++|.++.++.....++... +...++++++||||.
T Consensus 158 ~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 237 (386)
T PRK07550 158 ALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKS 237 (386)
T ss_pred HHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhh
Confidence 9998889999999999999999999999999999999999999999999987654333333222 234579999999999
Q ss_pred CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
++++|+|+||+++++ +++++++.... ...+++.++|.++
T Consensus 238 ~g~~G~RiG~i~~~~--------~~~~~~~~~~~~~~~~~s~~~q~~~ 277 (386)
T PRK07550 238 YALTGHRVGAVVASP--------ARIAEIEKFMDTVAICAPRIGQIAV 277 (386)
T ss_pred ccCcccceEeeecCH--------HHHHHHHHHHhhcccCCCcHHHHHH
Confidence 999999999999843 47777777654 4556788888764
No 34
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=100.00 E-value=3.7e-41 Score=308.37 Aligned_cols=277 Identities=22% Similarity=0.232 Sum_probs=209.1
Q ss_pred hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCCh--HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213 17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTA--VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA 94 (301)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~--~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 94 (301)
+...+++.+..+...+.. ...+++|+|+.|.|.. |.+..| +.+.+++.+.++.....+|++..|.++||++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~g~~~~-~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia 79 (396)
T PRK09257 5 LEAAPADPILGLMEAFRA----DPRPDKVNLGVGVYKD-EQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQ 79 (396)
T ss_pred CCCCCCChHHHHHHHHhh----CCCcCcEecceeeEEC-CCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHH
Confidence 345667777776654422 1245789999996421 222333 678888887765545558999999999999999
Q ss_pred HHHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCH
Q 022213 95 DYLSRDLPYKLSADDV--YVTLGCKQAVEVILSVL--ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL 170 (301)
Q Consensus 95 ~~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 170 (301)
+|+.+..+..+++++| ++|+|+++|+..+++.+ +++||+|++++|+|+.|...++..|++++.+++...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~ 159 (396)
T PRK09257 80 ELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDF 159 (396)
T ss_pred HHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCH
Confidence 9997765555678887 99999999999998776 4899999999999999999999999999999874444578999
Q ss_pred HHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccC-CCCCCCccccCC-CCCEE
Q 022213 171 DAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG-SIPYTPMGLFGS-IVPVI 245 (301)
Q Consensus 171 ~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~-~~~~~~~~~~~~-~~~vi 245 (301)
+.+++.++. +++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.++ +....++..+.. ..++|
T Consensus 160 ~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi 239 (396)
T PRK09257 160 DAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELL 239 (396)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEE
Confidence 999988752 3455666999999999999999999999999999999999999999875 222334433332 35799
Q ss_pred EEecCcccCCCCcceeEEEEeeCC-CCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 246 TLGSISKRWLVPGWRFGWLVTNDP-NGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 246 ~~~s~SK~~~~~G~rvG~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
+++||||.|+++|+|+||+++..+ ...+ .+++.+++.... ...+++.+.|.++
T Consensus 240 ~i~SfSK~~~~~GlRiG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~q~~~ 294 (396)
T PRK09257 240 VASSFSKNFGLYGERVGALSVVAEDAEEA--DRVLSQLKATIRTNYSNPPAHGAAIV 294 (396)
T ss_pred EEEEcCCcCccccccceeEEEEeCCHHHH--HHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence 999999999999999999985221 1000 124444444332 3445677777653
No 35
>PRK07337 aminotransferase; Validated
Probab=100.00 E-value=2e-40 Score=302.95 Aligned_cols=268 Identities=22% Similarity=0.393 Sum_probs=221.7
Q ss_pred hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213 15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA 94 (301)
Q Consensus 15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 94 (301)
.++.....+.++.+.+.+. ++ +..++++++|+.|+|. +++++.+.+++.+.+.. ....|++..|..+||+++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia 77 (388)
T PRK07337 5 ARVDAIEPFYVMELAKEAQ-AL-ERAGRDIIHMGIGEPD----FTAPEPVVEAAARALRR-GVTQYTSALGLAPLREAIA 77 (388)
T ss_pred hHhHhcCchHHHHHHHHHH-HH-HhcCCCEEEeCCcCCC----CCCCHHHHHHHHHHHhc-CCCCCCCCCCCHHHHHHHH
Confidence 3444445555555554332 23 2346789999999974 55677888888887764 3457998889999999999
Q ss_pred HHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHH
Q 022213 95 DYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVE 174 (301)
Q Consensus 95 ~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 174 (301)
+|+.+.++..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++++.++++.+|+++++
T Consensus 78 ~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 157 (388)
T PRK07337 78 AWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVE 157 (388)
T ss_pred HHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHH
Confidence 99998888888999999999999999999999999999999999999999988999999999999876667889999999
Q ss_pred hhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC
Q 022213 175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW 254 (301)
Q Consensus 175 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~ 254 (301)
+.++++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++. +.+...+ ..++|+++||||.|
T Consensus 158 ~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~--~~~vi~~~S~SK~~ 234 (388)
T PRK07337 158 AAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSALSL--GDDVITINSFSKYF 234 (388)
T ss_pred hhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChhhc--cCCEEEEEechhhc
Confidence 99988899999999999999999999999999999999999999999999888653 2222222 35789999999999
Q ss_pred CCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 255 LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 255 ~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
++||+|+||+++++ +++++++.... ...+++.++|.++
T Consensus 235 ~~~G~RiG~~~~~~--------~l~~~l~~~~~~~~~~~s~~~q~~~ 273 (388)
T PRK07337 235 NMTGWRLGWLVVPE--------ALVGTFEKLAQNLFICASALAQHAA 273 (388)
T ss_pred CCchhheeeeecCH--------HHHHHHHHHHHHhccCCChHHHHHH
Confidence 99999999999853 47777776653 3456788888663
No 36
>PRK07683 aminotransferase A; Validated
Probab=100.00 E-value=6.3e-40 Score=299.33 Aligned_cols=266 Identities=22% Similarity=0.418 Sum_probs=221.3
Q ss_pred chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213 14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI 93 (301)
Q Consensus 14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 93 (301)
+.+++......+.++...+. ..+++|+|+.|+|. +++++.+.+++.+.+... ...|++..|..+||+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~~~p~----~~~~~~~~~a~~~~~~~~-~~~Y~~~~g~~~lr~~i 74 (387)
T PRK07683 6 NPRVKDIQISGIRQFSNMVQ------NYDNLISLTIGQPD----FPTPSHVKEAAKRAITEN-YTSYTHNAGLLELRKAA 74 (387)
T ss_pred hHHHHhCCccHHHHHHHHHH------hcCCeEEecCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHH
Confidence 34566667777777665332 14678999999964 556778889988887643 45799889999999999
Q ss_pred HHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213 94 ADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA 172 (301)
Q Consensus 94 a~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 172 (301)
++++.+.+++.++++ +|++|+|+++|+.+++++++++||.|++++|+|..|...++..|.++++++.+. +++.++.+.
T Consensus 75 a~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~ 153 (387)
T PRK07683 75 CNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRS-TGFRLTAEA 153 (387)
T ss_pred HHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCc-ccCCCCHHH
Confidence 999988788888898 999999999999999999999999999999999999999999999999998753 567789999
Q ss_pred HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc-CCCCCEEEEecCc
Q 022213 173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVITLGSIS 251 (301)
Q Consensus 173 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~~~vi~~~s~S 251 (301)
+++.++++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..++..+ +..+++|+++|||
T Consensus 154 l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~S 232 (387)
T PRK07683 154 LENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPEMREKTIVINGLS 232 (387)
T ss_pred HHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccCCcCCeEEEeecc
Confidence 9998888889999999999999999999999999999999999999999999988653 3344444 2345799999999
Q ss_pred ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCcccccccC
Q 022213 252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQVCE 300 (301)
Q Consensus 252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~ 300 (301)
|.|++||+|+||++++. ++++++...... ..+++.++|.++
T Consensus 233 K~~~~pGlRiG~i~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~ 274 (387)
T PRK07683 233 KSHSMTGWRIGFLFAPS--------YLAKHILKVHQYNVTCASSISQYAA 274 (387)
T ss_pred ccccCccceeEEEEcCH--------HHHHHHHHHHHhccCCCChHHHHHH
Confidence 99999999999999743 477777765432 345677777653
No 37
>PRK07682 hypothetical protein; Validated
Probab=100.00 E-value=2.6e-40 Score=301.12 Aligned_cols=245 Identities=25% Similarity=0.470 Sum_probs=209.1
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHH
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAV 120 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al 120 (301)
+++|+|+.|+|. +++++.+.+++.+.+.. ....|++..|..+||+++++++.+.++..++++ +|++|+|+++++
T Consensus 20 ~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al 94 (378)
T PRK07682 20 EGVISLGVGEPD----FVTPWNVREASIRSLEQ-GYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQAL 94 (378)
T ss_pred CCeEEeCCCCCC----CCCCHHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHH
Confidence 579999999975 45566778888777764 345799888999999999999998888878876 799999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
.+++++++++||+|++++|+|..|...++..|.+++.+++..++++.+|++++++.++++++++++++||||||.+++.+
T Consensus 95 ~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~ 174 (378)
T PRK07682 95 DVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKS 174 (378)
T ss_pred HHHHHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHH
Confidence 99999999999999999999999999999999999999876656788999999999988899999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
++++|+++|++|++++|+||+|.++.|++. +.++..+.. ..++++++||||.|++||+|+||++++. +++
T Consensus 175 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~--------~~i 245 (378)
T PRK07682 175 ELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPV--------YFS 245 (378)
T ss_pred HHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecCcccccChhhhhhhhhcCH--------HHH
Confidence 999999999999999999999999998753 334434332 3579999999999999999999999743 477
Q ss_pred HHHHhhhc-ccCCCcccccccC
Q 022213 280 DSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 280 ~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
++++.... ...+++.+.|.++
T Consensus 246 ~~l~~~~~~~~~~~~~~~q~a~ 267 (378)
T PRK07682 246 EAMLKIHQYSMMCAPTMAQFAA 267 (378)
T ss_pred HHHHHHHHhhccCCCHHHHHHH
Confidence 88776654 2346777888653
No 38
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=100.00 E-value=2.4e-40 Score=304.24 Aligned_cols=231 Identities=20% Similarity=0.251 Sum_probs=190.6
Q ss_pred HHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc----CCCCCCCCCCCCHHHHHHHHHHHhhhCC
Q 022213 27 TSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS----GKFNCYATNSGIPPARRAIADYLSRDLP 102 (301)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~ 102 (301)
.+...+.+......++++++|+.|+|. +++++.+.+++.+++.. .....|++..|.++||+++|+++.+.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g 94 (409)
T PRK07590 19 EIARRVNAFREANPEAKIIRLGIGDVT----QPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARG 94 (409)
T ss_pred HHHHHHHHHhhhcCCCceEEecCcCCC----CCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 444433333323335689999999974 56678888888887764 2456898889999999999999988888
Q ss_pred CCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCce-----------EEEeecCCCCCCCCCHH
Q 022213 103 YKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVE-----------VRHFDLLPERNWEVDLD 171 (301)
Q Consensus 103 ~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~~~~~~ 171 (301)
.++++++|++|+|+++++..+. .++++||+|++++|+|..|...++..|.+ ++.++++.++++..+.+
T Consensus 95 ~~~~~~~I~it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 173 (409)
T PRK07590 95 CDISADEIFISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP 173 (409)
T ss_pred CcCChhhEEECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCc
Confidence 8899999999999999999865 55689999999999999999999999986 88888865555555532
Q ss_pred HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC-CCEEEEecC
Q 022213 172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI-VPVITLGSI 250 (301)
Q Consensus 172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~-~~vi~~~s~ 250 (301)
.++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++..+.++..++.. .++|+++||
T Consensus 174 ------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~Sf 247 (409)
T PRK07590 174 ------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSF 247 (409)
T ss_pred ------ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecC
Confidence 2478999999999999999999999999999999999999999999998876544555555443 469999999
Q ss_pred cccCCCCcceeEEEEeeC
Q 022213 251 SKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 251 SK~~~~~G~rvG~~~~~~ 268 (301)
||.|++||+|+||+++++
T Consensus 248 SK~~~~pGlRiG~~i~~~ 265 (409)
T PRK07590 248 SKTAGFTGTRCAYTVVPK 265 (409)
T ss_pred ccccCCcCceeEEEEcCH
Confidence 999999999999999854
No 39
>PRK08363 alanine aminotransferase; Validated
Probab=100.00 E-value=5.6e-40 Score=300.87 Aligned_cols=252 Identities=29% Similarity=0.542 Sum_probs=209.8
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA 119 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a 119 (301)
.+.++|+|+.|.|... .+++++.+.+++.+.+... ...|++..|..+||+++++|+.+.+++.+++++|++|+|++++
T Consensus 28 ~~~~~i~l~~g~p~~~-~~~p~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 105 (398)
T PRK08363 28 KGIKVIRLNIGDPVKF-DFQPPEHMKEAYCRAIKEG-HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEA 105 (398)
T ss_pred cCCCeEEEeCCCCCcC-CCCCCHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHH
Confidence 4679999999998531 4677889999998887643 3469888899999999999999888888999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+..++.+++++||.|++++|+|..+...++..|.+++.++...++++.+|++.+++.++++++++++++||||||.+++.
T Consensus 106 l~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~ 185 (398)
T PRK08363 106 LQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEK 185 (398)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCH
Confidence 99999999999999999999999999999999998888743334567799999999988888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
+++++|+++|+++|+++|+|++|.++.|++ .+.++..+....++|+++||||.|++||+|+||+++.++. +++
T Consensus 186 ~~~~~l~~~a~~~~~~li~Deay~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~------~~~ 258 (398)
T PRK08363 186 KTLKEILDIAGEHDLPVISDEIYDLMTYEG-KHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPE------GKL 258 (398)
T ss_pred HHHHHHHHHHHHcCeEEEEhhhhhhhccCC-cccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcH------HHH
Confidence 999999999999999999999999998865 3344555555568999999999999999999999973322 244
Q ss_pred HHHHhh----hcccCCCcccccccC
Q 022213 280 DSIKDC----LSIYSDIPTFIQVCE 300 (301)
Q Consensus 280 ~~~~~~----~~~~~~~~~~~q~~~ 300 (301)
+.++.. .....+++.++|.++
T Consensus 259 ~~l~~~~~~~~~~~~~~s~~~q~~~ 283 (398)
T PRK08363 259 AEVREAIDKLARIRLCPNTPAQFAA 283 (398)
T ss_pred HHHHHHHHHHhcccccCChHHHHHH
Confidence 444333 222346777877653
No 40
>PRK06107 aspartate aminotransferase; Provisional
Probab=100.00 E-value=4.8e-40 Score=301.57 Aligned_cols=248 Identities=25% Similarity=0.411 Sum_probs=214.8
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA 119 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a 119 (301)
.+.++++|+.|.|. +++++.+.+++.+.+... ..+|++..|.++||+++++++.+.++..+.+++|++|+|+++|
T Consensus 31 ~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 105 (402)
T PRK06107 31 AGRSIVDLTVGEPD----FDTPDHIKQAAVAAIERG-ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQA 105 (402)
T ss_pred ccCCEEEcCCCCCC----CCCCHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHH
Confidence 36789999999974 566788889988888643 3479999999999999999999888888889999999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+..++.+++++||.|++++|+|..|...+...+..++.++++.++++.++++.+++.++++++++++++|+||||.+++.
T Consensus 106 l~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~ 185 (402)
T PRK06107 106 IFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSR 185 (402)
T ss_pred HHHHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCH
Confidence 99999999999999999999999998888888888888887656678899999999988888999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEccCCcccccCCCCCCCccccCC--CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213 200 HHLQEIAEMARKL-RVMVVADEVYGHLTFGSIPYTPMGLFGS--IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS 276 (301)
Q Consensus 200 ~~l~~i~~~~~~~-~~~ii~D~~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~ 276 (301)
+++++|+++|+++ ++++|+||+|.++.|++..+.++..+.. .+++|+++||||.|++||+|+||++++.
T Consensus 186 ~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~-------- 257 (402)
T PRK06107 186 AELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPA-------- 257 (402)
T ss_pred HHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCH--------
Confidence 9999999999998 9999999999999887655555555533 3589999999999999999999999743
Q ss_pred hHHHHHHhhhc-ccCCCcccccccC
Q 022213 277 GIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 277 ~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
+++++++.... ...+++.++|.++
T Consensus 258 ~~~~~~~~~~~~~~~~~s~~~q~~~ 282 (402)
T PRK06107 258 DLIAAINKLQSQSSSCPSSISQAAA 282 (402)
T ss_pred HHHHHHHHHHHhcccCCChHHHHHH
Confidence 47888887765 3567888888764
No 41
>PRK05839 hypothetical protein; Provisional
Probab=100.00 E-value=4e-40 Score=299.28 Aligned_cols=242 Identities=22% Similarity=0.369 Sum_probs=200.6
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
+.++|+|+.|+|. +++++.+.+++.+... ....|+++.|..+||+++++++.+.+|..+++++|++|+|+++++
T Consensus 23 ~~~~i~l~~~~p~----~~~~~~~~~a~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al 96 (374)
T PRK05839 23 EYKGLDLTIGEPQ----FETPKFIQDALKNNAH--LLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVL 96 (374)
T ss_pred CCCeEEcCCCCCC----CCCCHHHHHHHHHHhh--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence 6699999999974 5667888888876653 356899999999999999999998888889999999999999999
Q ss_pred HHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213 121 EVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 121 ~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~ 198 (301)
..+++.++ ++||.|+++.|+|..|...++..|++++.++++.+++|.+|+++.+ + ++++++++++||||||.+++
T Consensus 97 ~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~i~nP~NPTG~~~s 173 (374)
T PRK05839 97 FNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVILNSPNNPTGRTLS 173 (374)
T ss_pred HHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccEEEEeCCCCCcCcccC
Confidence 99988874 4799999999999999999999999999999876667777765443 2 36899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc------CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCc
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF------GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGI 272 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~------~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~ 272 (301)
.+++++|+++|+++|++||+||+|.++.+++ .+.++... ...+++|+++||||.|++||+|+||++++.
T Consensus 174 ~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~---- 248 (374)
T PRK05839 174 LEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDA---- 248 (374)
T ss_pred HHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCH----
Confidence 9999999999999999999999999986543 33332221 123589999999999999999999999742
Q ss_pred ccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 273 FQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 273 ~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
+++++++.... ...+++.+.|.++
T Consensus 249 ----~~~~~~~~~~~~~~~~~~~~~q~~~ 273 (374)
T PRK05839 249 ----SILKKYKAYRTYLGCASPLPLQKAA 273 (374)
T ss_pred ----HHHHHHHHHHhhcCCCCChHHHHHH
Confidence 47788777643 3456777777653
No 42
>PRK08912 hypothetical protein; Provisional
Probab=100.00 E-value=8.6e-40 Score=298.61 Aligned_cols=262 Identities=24% Similarity=0.389 Sum_probs=214.3
Q ss_pred hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHH
Q 022213 17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADY 96 (301)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 96 (301)
+...+...+..+.+.. ...++|+|+.|.|. .+.|+.+.+++.+.+... ...|++..|.++||++++++
T Consensus 8 ~~~~~~~~~~~~~~~~-------~~~~~i~l~~g~p~----~~~p~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~ 75 (387)
T PRK08912 8 FADLPTTIFEVMSQLA-------REHGAINLGQGFPD----DPGPEDVRRAAADALLDG-SNQYPPMMGLPELRQAVAAH 75 (387)
T ss_pred HhhCCCCHHHHHHHHH-------hhCCeEEccCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHH
Confidence 3344555554444422 13689999999975 344667777777766533 45799999999999999999
Q ss_pred HhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHh
Q 022213 97 LSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEA 175 (301)
Q Consensus 97 l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 175 (301)
+.+.++..++++ +|++|+|+++++..++..++++||+|++++|+|..+...++..|.+++.++++. .++.++++.+++
T Consensus 76 ~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~ 154 (387)
T PRK08912 76 YARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEP-PHWRLPRAALAA 154 (387)
T ss_pred HHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccCcCCHHHHHH
Confidence 998888888998 999999999999999999999999999999999999999999999999998753 357799999999
Q ss_pred hcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccC
Q 022213 176 LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRW 254 (301)
Q Consensus 176 ~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~ 254 (301)
.++.+++++++++||||||.+++.+++++|+++|++|++++|+||+|.++.|++....++..+.. .+++|+++||||.|
T Consensus 155 ~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 234 (387)
T PRK08912 155 AFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIF 234 (387)
T ss_pred HhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhc
Confidence 98888899999999999999999999999999999999999999999999887644445444433 35799999999999
Q ss_pred CCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCccccccc
Q 022213 255 LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQVC 299 (301)
Q Consensus 255 ~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~ 299 (301)
+++|+|+||++++. +++++++..... ..+++...|.+
T Consensus 235 g~~GlRiG~~~~~~--------~~~~~l~~~~~~~~~~~~~~~q~~ 272 (387)
T PRK08912 235 SLTGWKVGFVCAAP--------PLLRVLAKAHQFLTFTTPPNLQAA 272 (387)
T ss_pred cCcCceeEEEecCH--------HHHHHHHHHHhhccccCChHHHHH
Confidence 99999999999843 477777666542 33455556654
No 43
>PRK08361 aspartate aminotransferase; Provisional
Probab=100.00 E-value=5.7e-40 Score=300.16 Aligned_cols=266 Identities=25% Similarity=0.455 Sum_probs=221.1
Q ss_pred chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213 14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI 93 (301)
Q Consensus 14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 93 (301)
+.+........++++.+... ..+++|+|+.|+|. +++++.+.+++.+.++.. ...|.+..|..+||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~i 79 (391)
T PRK08361 11 AGRINLIQRSKIRELFERAS------KMENVISLGIGEPD----FDTPKNIKEAAKRALDEG-WTHYTPNAGIPELREAI 79 (391)
T ss_pred hHHHHhCCccHHHHHHHHHH------hhcCeEEcCCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHH
Confidence 45555556666666654321 13579999999975 555788889888877643 34698888999999999
Q ss_pred HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213 94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV 173 (301)
Q Consensus 94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l 173 (301)
++++.+.+|.++++++|++|+|+++++..++.+++++||.|++++|+|..+...+...|.+++.++++.++++.+|++.+
T Consensus 80 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 159 (391)
T PRK08361 80 AEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDEL 159 (391)
T ss_pred HHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHH
Confidence 99998877888899999999999999999999999999999999999999999999999999999987766788999999
Q ss_pred HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213 174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR 253 (301)
Q Consensus 174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~ 253 (301)
++.++++++++++++|+||||.+++.+++++|+++|+++++++|+||+|.++.+++....++..+.. .++|+++||||.
T Consensus 160 ~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~ 238 (391)
T PRK08361 160 LELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP-DNTILANSFSKT 238 (391)
T ss_pred HHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCC-CCEEEEecCchh
Confidence 9999888999999999999999999999999999999999999999999999886544444444332 478999999999
Q ss_pred CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
|+++|+|+||+++++ +++++++.... ...+++.+.|.+
T Consensus 239 ~~~~GlRiG~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~ 277 (391)
T PRK08361 239 FAMTGWRLGFVIAPE--------QVIKDMIKLHAYIIGNVASFVQIA 277 (391)
T ss_pred cCCcHhhhhhhccCH--------HHHHHHHHHHhhhccCCChHHHHH
Confidence 999999999999853 47777766543 344667777765
No 44
>PRK06108 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.3e-39 Score=296.99 Aligned_cols=262 Identities=27% Similarity=0.404 Sum_probs=217.3
Q ss_pred cCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHh
Q 022213 19 AAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLS 98 (301)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~ 98 (301)
......++++..... ..+++|+|+.|+|. +++++.+.+++.+.+.+.. ..|++..|.++||+++++++.
T Consensus 7 ~~~~~~~~~~~~~~~------~~~~~i~l~~g~~~----~~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~la~~~~ 75 (382)
T PRK06108 7 ALPESGIREVANAGR------GREGVLPLWFGESD----LPTPDFIRDAAAAALADGE-TFYTHNLGIPELREALARYVS 75 (382)
T ss_pred hCCchHHHHHHHHHh------ccCCeEEecCCCCC----CCCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHH
Confidence 344455555544321 13579999999974 6778899999988877543 369998999999999999999
Q ss_pred hhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC-CCCCCCHHHHHhhc
Q 022213 99 RDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWEVDLDAVEALA 177 (301)
Q Consensus 99 ~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~ 177 (301)
+.++..+++++|++|+|+++++..++.+++++||.|++++|+|..+...++..|++++.++++.+ .+|.+|++.+++.+
T Consensus 76 ~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 155 (382)
T PRK06108 76 RLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI 155 (382)
T ss_pred HHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc
Confidence 87888889999999999999999999999999999999999999999999999999999998653 46779999999998
Q ss_pred ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccC-CCCCCCccccC-CCCCEEEEecCcccCC
Q 022213 178 DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG-SIPYTPMGLFG-SIVPVITLGSISKRWL 255 (301)
Q Consensus 178 ~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~-~~~~~~~~~~~-~~~~vi~~~s~SK~~~ 255 (301)
+++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++ +....++..+. ...++++++||||.|+
T Consensus 156 ~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 235 (382)
T PRK06108 156 TPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWA 235 (382)
T ss_pred CccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhcc
Confidence 878899999999999999999999999999999999999999999999886 33333333332 3467999999999999
Q ss_pred CCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 256 VPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 256 ~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
++|+|+||++++. +++++++.... ...+++.+.|.+
T Consensus 236 ~~G~RiG~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~a 272 (382)
T PRK06108 236 MTGWRLGWLVAPP--------ALGQVLEKLIEYNTSCVAQFVQRA 272 (382)
T ss_pred CcccceeeeeCCH--------HHHHHHHHHHHhcccCCChHHHHH
Confidence 9999999999843 47777766543 244677777765
No 45
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=100.00 E-value=6.7e-40 Score=295.43 Aligned_cols=241 Identities=28% Similarity=0.408 Sum_probs=205.3
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHHH
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVE 121 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al~ 121 (301)
.+++|+.|+|. +++++.+.+++.+... ...+|+++.|..+||+++++|+.+.+|++++++ +|++|+|+++++.
T Consensus 1 ~~~~~~~g~p~----~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~ 74 (350)
T TIGR03537 1 RLFDFGTGDPK----EPTPPFIRKALIDAVP--EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIF 74 (350)
T ss_pred CeEeccCCCCC----CCCCHHHHHHHHHHHh--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHH
Confidence 36899999974 6667888899887764 456899989999999999999998888889998 9999999999999
Q ss_pred HHHHHhcCCC---CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213 122 VILSVLARPG---ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 122 ~~~~~l~~~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~ 198 (301)
.++.+++++| |.|+++.|+|..|...++..|++++.+++.+++++.+|++.++++++++++++++++||||||.+++
T Consensus 75 ~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~ 154 (350)
T TIGR03537 75 HFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAP 154 (350)
T ss_pred HHHHHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccC
Confidence 9999999887 6999999999999999999999999999876677889999999988888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI 278 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~ 278 (301)
.+++++|+++|+++|+++|+||+|.++.+++ ...++..++ .+++|+++||||.++++|+|+||++++. ++
T Consensus 155 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~-~~~~i~~~s~SK~~g~~GlRiG~~~~~~--------~~ 224 (350)
T TIGR03537 155 RSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEVG-IENVLAFHSLSKRSGMTGYRSGFVAGDE--------KL 224 (350)
T ss_pred HHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhcC-cCCEEEEeecccccCCccccceeeecCH--------HH
Confidence 9999999999999999999999999987754 333333333 3589999999999999999999998632 47
Q ss_pred HHHHHhhhc-ccCCCccccccc
Q 022213 279 IDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 279 ~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
+.+++.... ...+++.+.|.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~q~~ 246 (350)
T TIGR03537 225 ISFLRKLRANFGVASPDFVQAA 246 (350)
T ss_pred HHHHHHHHHhhccCCCHHHHHH
Confidence 777776643 233455556654
No 46
>PRK05957 aspartate aminotransferase; Provisional
Probab=100.00 E-value=3.4e-39 Score=294.68 Aligned_cols=245 Identities=24% Similarity=0.354 Sum_probs=210.0
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-CCCEEEcCCHHHHH
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAV 120 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t~g~~~al 120 (301)
+++++|+.|.|. +++++.+.+++.+.+.......|++..|.+++|+++++++.+.++..++ +++|++|+|+++++
T Consensus 27 ~~~~~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l 102 (389)
T PRK05957 27 PGTISLGQGVVS----YPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAF 102 (389)
T ss_pred CCeEEccCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHH
Confidence 578999999974 6678889999988776555567999899999999999999988887776 77899999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
..++.+++++||+|++++|+|..+...++..|++++.++.+ .++.+|++++++.++++++++++++||||||.+++.+
T Consensus 103 ~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~ 180 (389)
T PRK05957 103 MNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD--DNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEA 180 (389)
T ss_pred HHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC--CCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHH
Confidence 99999999999999999999999988888999999999874 4567999999999988899999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc-CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
++++|+++|+++|+++|+||+|.++.|++....+...+ +...++|+++||||.|++||+|+||+++++ +++
T Consensus 181 ~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~--------~~~ 252 (389)
T PRK05957 181 LLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPI--------HLL 252 (389)
T ss_pred HHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCH--------HHH
Confidence 99999999999999999999999999865333333332 344589999999999999999999999743 488
Q ss_pred HHHHhhhc-ccCCCcccccccC
Q 022213 280 DSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 280 ~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
++++.... ...+++.+.|.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~q~~~ 274 (389)
T PRK05957 253 EAIKKIQDTILICPPVVSQYAA 274 (389)
T ss_pred HHHHHHHhhcccCCCcHHHHHH
Confidence 88887664 3456777888763
No 47
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-40 Score=305.13 Aligned_cols=246 Identities=24% Similarity=0.370 Sum_probs=213.9
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc--CC-CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS--GK-FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~--~~-~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
.+.+++|+.|.|+. .+.+-....+++.+.++. .. ...|.++.|..+||+++++++...+|+.+++++|++|+|++
T Consensus 88 ~~~~i~f~~g~p~~--~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q 165 (459)
T COG1167 88 DPSVIDFAGGLPDP--SLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQ 165 (459)
T ss_pred CCceecCCCCCCCc--ccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHH
Confidence 37899999998763 344556667777777653 22 56888889999999999999997799999999999999999
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEE-cCCCCCccc
Q 022213 118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVI-INPGNPCGN 195 (301)
Q Consensus 118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l-~~p~nptG~ 195 (301)
+|++++++.+++|||+|++++|+|.+...+++.+|++++.+|++ ..++|++.|++.++. ++|++++ .+.+||||.
T Consensus 166 ~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d---~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~ 242 (459)
T COG1167 166 QALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVD---EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGV 242 (459)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC---CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCC
Confidence 99999999999999999999999999999999999999999985 334999999999876 4666544 456999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccc
Q 022213 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQK 275 (301)
Q Consensus 196 ~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~ 275 (301)
+++.+++++|+++|++||++||+||.|+++.|++.+..++..++..++||+++||||+ .+||+|+||+++|.
T Consensus 243 tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~-l~PglRlG~vv~p~------- 314 (459)
T COG1167 243 TMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKT-LAPGLRLGYVVAPP------- 314 (459)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhh-cccccceeeeeCCH-------
Confidence 9999999999999999999999999999999998878788889888999999999999 68999999999864
Q ss_pred hhHHHHHHhhhc-ccCCCcccccccC
Q 022213 276 SGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 276 ~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
++++++..... ...+++.++|.++
T Consensus 315 -~~~~~~~~~k~~~~~~~s~~~Q~~l 339 (459)
T COG1167 315 -ELIEKLLRLKQAADLGPSSLSQAAL 339 (459)
T ss_pred -HHHHHHHHHHHHhcCCCChHHHHHH
Confidence 47888877754 4668899998775
No 48
>PTZ00376 aspartate aminotransferase; Provisional
Probab=100.00 E-value=3e-40 Score=303.04 Aligned_cols=278 Identities=17% Similarity=0.189 Sum_probs=202.9
Q ss_pred hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCC-CCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q 022213 17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPT-AFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIAD 95 (301)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 95 (301)
+...+.+.++.+.+.+. +...+++|+|+.|.|. ..|.....+.+.+++.+........+|++..|.++||+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~----~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~ 83 (404)
T PTZ00376 8 VPLGPPDPILGLAAAFK----ADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQK 83 (404)
T ss_pred CCcCCCChHHHHHHHHh----hcCCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHH
Confidence 44456677777766442 1224688999999862 211111223344444333333345689999999999999999
Q ss_pred HHhhhCCCCCCCCCEE--EcCCHHHHHHHHHH---HhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCH
Q 022213 96 YLSRDLPYKLSADDVY--VTLGCKQAVEVILS---VLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL 170 (301)
Q Consensus 96 ~l~~~~~~~~~~~~i~--~t~g~~~al~~~~~---~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 170 (301)
|+.+..+..+++++|+ .|.|+++++..++. +++++||+|++++|+|+.|...++..|++++.+++..++++++|+
T Consensus 84 ~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~ 163 (404)
T PTZ00376 84 LLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDF 163 (404)
T ss_pred HhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCH
Confidence 9976555567888998 59999999988875 667999999999999999999999999999999985555688999
Q ss_pred HHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC--CCCCccccCC-CCCE
Q 022213 171 DAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI--PYTPMGLFGS-IVPV 244 (301)
Q Consensus 171 ~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~~~-~~~v 244 (301)
+.+++.++. +++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++. ...++..+.. .+++
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~v 243 (404)
T PTZ00376 164 DGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEF 243 (404)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcE
Confidence 999998852 356677799999999999999999999999999999999999999998541 1223333322 2479
Q ss_pred EEEecCcccCCCCcceeEEEEee-CCCCcccchhHHHHHHhhh-cccCCCcccccccC
Q 022213 245 ITLGSISKRWLVPGWRFGWLVTN-DPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVCE 300 (301)
Q Consensus 245 i~~~s~SK~~~~~G~rvG~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~ 300 (301)
|+++||||.|++||+|+||+++. .+.... +++++.+++.. ....+++.+.|.++
T Consensus 244 i~i~SfSK~~~~~GlRvG~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~q~~~ 299 (404)
T PTZ00376 244 LVAQSFSKNMGLYGERIGALHIVCANKEEA--ANVLSQLKLIIRPMYSSPPIHGARIA 299 (404)
T ss_pred EEEEeCCCcccccccccceEEEEeCCHHHH--HHHHHHHHHHHhhhcCCCchHHHHHH
Confidence 99999999999999999998531 111000 11333444332 23345677777653
No 49
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=100.00 E-value=3.7e-39 Score=294.66 Aligned_cols=265 Identities=23% Similarity=0.430 Sum_probs=216.6
Q ss_pred hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213 15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA 94 (301)
Q Consensus 15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 94 (301)
.++...+...++++.+.+. +.+++|+|+.|+|. +.+++.+.+++.+.+... ...|.+..|.++||++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia 77 (391)
T PRK07309 9 KQLDKIEVSLIRQFDQSIS------DIPGILKLTLGEPD----FTTPDHVKEAAKRAIDAN-QSHYTGMAGLLELRQAAA 77 (391)
T ss_pred hhhhhcCccHHHHHHHHHH------hcCCeEEcCCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHH
Confidence 3444555555555554331 13679999999974 555778888888777643 346988889999999999
Q ss_pred HHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213 95 DYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV 173 (301)
Q Consensus 95 ~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l 173 (301)
+++.+.+++.+.+ ++|++|+|+++++++++++++++||+|++++|+|.++...++..|.+++.++.+ ..++.+|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l 156 (391)
T PRK07309 78 DFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTT-ENDFVLTPEML 156 (391)
T ss_pred HHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecC-CcCCcCCHHHH
Confidence 9999878877764 799999999999999999999999999999999999999999999999999874 34567999999
Q ss_pred Hhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213 174 EALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI 250 (301)
Q Consensus 174 ~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~ 250 (301)
++.+++ +++++++++|+||||.+++.+++++|+++|++|++++|+|++|.++.|++....++..+.. .++|+++||
T Consensus 157 ~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~i~~~S~ 235 (391)
T PRK07309 157 EKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLP-DQTILINGL 235 (391)
T ss_pred HHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhcc-CCEEEEecC
Confidence 988864 5788999999999999999999999999999999999999999999986554555544432 589999999
Q ss_pred cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
||.|++||+|+||++++. +++++++.... ...+++.++|.++
T Consensus 236 SK~~g~~GlRvG~~v~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~ 278 (391)
T PRK07309 236 SKSHAMTGWRIGLIFAPA--------EFTAQLIKSHQYLVTAATTMAQFAA 278 (391)
T ss_pred hhhccCccceeEEEEeCH--------HHHHHHHHHHhhcccCCChHHHHHH
Confidence 999999999999999853 47777776543 3456788888753
No 50
>PRK07777 aminotransferase; Validated
Probab=100.00 E-value=4.2e-39 Score=294.05 Aligned_cols=263 Identities=28% Similarity=0.431 Sum_probs=216.7
Q ss_pred hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHH
Q 022213 17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADY 96 (301)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 96 (301)
++..+...++.+.+.+. ..++|+|+.|.|. .+.|+.+.+++.+.+... ..+|++..|..+||++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~-------~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~ 73 (387)
T PRK07777 6 LRPFGTTIFAEMSALAV-------RTGAVNLGQGFPD----EDGPPEMLEAAQEAIAGG-VNQYPPGPGIPELRAAIAAQ 73 (387)
T ss_pred hhhcCccHHHHHHHHHh-------hCCeEEccCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHH
Confidence 44556666666665442 3589999999976 334556777777777643 45799889999999999999
Q ss_pred HhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC-CCCCCCHHHHH
Q 022213 97 LSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWEVDLDAVE 174 (301)
Q Consensus 97 l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~ 174 (301)
+.+.++...+++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++..|.+++.++++.. .+|.+|+++++
T Consensus 74 ~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~ 153 (387)
T PRK07777 74 RRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALR 153 (387)
T ss_pred HHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHH
Confidence 988788777776 7999999999999999999999999999999999999999999999999988665 46789999999
Q ss_pred hhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCccc
Q 022213 175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKR 253 (301)
Q Consensus 175 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~ 253 (301)
+.++++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++..+.++..+.. .+++|+++||||.
T Consensus 154 ~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 233 (387)
T PRK07777 154 AAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKT 233 (387)
T ss_pred HhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhh
Confidence 998888899999999999999999999999999999999999999999999986654455555443 4578999999999
Q ss_pred CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
|++||+|+||++++. +++++++.... ...+.+.+.|.+
T Consensus 234 ~g~~GlRiG~~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~ 272 (387)
T PRK07777 234 FNVTGWKIGWACGPA--------PLIAAVRAAKQYLTYVGGAPFQPA 272 (387)
T ss_pred ccCcCceeEEEecCH--------HHHHHHHHHHhhcccCCCCHHHHH
Confidence 999999999999743 47777766544 233566667754
No 51
>PRK07568 aspartate aminotransferase; Provisional
Probab=100.00 E-value=4.4e-39 Score=294.93 Aligned_cols=270 Identities=26% Similarity=0.427 Sum_probs=218.1
Q ss_pred hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213 15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA 94 (301)
Q Consensus 15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 94 (301)
.++.......++++...... . ...+.++|+|+.|.|. +++|+.+.+++.+... ....|++..|..++|++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~--~~~~Y~~~~g~~~lr~~ia 76 (397)
T PRK07568 5 KRVLNMPASPIRKLVPYADE-A-KKRGIKVYHLNIGQPD----IKTPEVFFEAIKNYDE--EVLAYSHSQGIPELREAFA 76 (397)
T ss_pred hHhhhCCcchHHHHHHHHHH-H-HhhCCCEEEecCCCCC----CCCCHHHHHHHHHHhc--CCcCcCCCCCCHHHHHHHH
Confidence 33444455667766543321 1 1124679999999964 5567888888876543 3457999899999999999
Q ss_pred HHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC-CHHHH
Q 022213 95 DYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV-DLDAV 173 (301)
Q Consensus 95 ~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~l 173 (301)
+++.. ++.++++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++++.+.++.. +++++
T Consensus 77 ~~~~~-~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l 155 (397)
T PRK07568 77 KYYKK-WGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEI 155 (397)
T ss_pred HHHHH-hCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHH
Confidence 99984 67778899999999999999999999999999999999999999888899999999998865555543 67999
Q ss_pred HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcc
Q 022213 174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISK 252 (301)
Q Consensus 174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK 252 (301)
+++++++++++++++|+||||.+++.+++++|+++|+++++++|+|++|.++.|++..+.++..+.. .+++|+++||||
T Consensus 156 ~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK 235 (397)
T PRK07568 156 EKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSK 235 (397)
T ss_pred HHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchh
Confidence 9998888899999999999999999999999999999999999999999999887655555555543 468999999999
Q ss_pred cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
.|++||+|+||++++++ ++++++........+++.+.|.++
T Consensus 236 ~~~~~G~R~G~~~~~~~-------~~~~~~~~~~~~~~~~s~~~q~~~ 276 (397)
T PRK07568 236 RYSACGARIGCLISKNK-------ELIAAAMKLCQARLSPPTLEQIGA 276 (397)
T ss_pred hccCCCcceEEEecCCH-------HHHHHHHHHhhccCCCCcHHHHHH
Confidence 99999999999997542 466666555433456788888764
No 52
>PRK05764 aspartate aminotransferase; Provisional
Probab=100.00 E-value=3.7e-39 Score=295.07 Aligned_cols=272 Identities=26% Similarity=0.433 Sum_probs=228.8
Q ss_pred cchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q 022213 13 DKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA 92 (301)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 92 (301)
.+.+++...++.+..+.+... .+. ..+.++++|+.|+|. +++++.+.+++.+.+.... ..|++..|...||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ 76 (393)
T PRK05764 4 LSKRVSRVTPSATLAVTAKAK-ELK-AQGRDVISLGAGEPD----FDTPEHIKEAAIEALDDGK-TKYTPAAGIPELREA 76 (393)
T ss_pred hhhhhhhcCchHHHHHHHHHH-HHH-hccCCEEEeCCCCCC----CCCCHHHHHHHHHHHhcCC-CCcCCCCChHHHHHH
Confidence 467777888888877765433 232 235789999999975 5667888899888876543 369998899999999
Q ss_pred HHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213 93 IADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA 172 (301)
Q Consensus 93 ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 172 (301)
+++++.+.++..+++++|++|+|+++++..++.+++++||.|++++|+|..+...++..|.+++.++++++.++.+|++.
T Consensus 77 ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 156 (393)
T PRK05764 77 IAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQ 156 (393)
T ss_pred HHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHH
Confidence 99999888787788999999999999999999999999999999999999999999999999999998766678899999
Q ss_pred HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc--CCCCCEEEEecC
Q 022213 173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF--GSIVPVITLGSI 250 (301)
Q Consensus 173 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~vi~~~s~ 250 (301)
+++.++++++++++++|+||||.+++.+++++|+++|++|++++|+|++|..+.+++..+.++..+ +...++|+++||
T Consensus 157 l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 236 (393)
T PRK05764 157 LEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGF 236 (393)
T ss_pred HHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecC
Confidence 999988888999999999999999999999999999999999999999999998865544455443 234579999999
Q ss_pred cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
||.++++|+|+||++++. +++++++.... ...+++.+.|.+
T Consensus 237 SK~~~~~G~RiG~i~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~ 278 (393)
T PRK05764 237 SKAYAMTGWRLGYAAGPK--------ELIKAMSKLQSHSTSNPTSIAQYA 278 (393)
T ss_pred cccccCccceeEEEecCH--------HHHHHHHHHHhhcccCCChHHHHH
Confidence 999999999999999642 47777776654 344677787765
No 53
>PRK09082 methionine aminotransferase; Validated
Probab=100.00 E-value=1.9e-39 Score=296.10 Aligned_cols=246 Identities=22% Similarity=0.354 Sum_probs=211.7
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQA 119 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~a 119 (301)
..++|+|+.|+|. ++.++.+.+++.+.+... ...|++..|.++||+++++++.+.++...+++ +|++|+|++++
T Consensus 29 ~~~~i~l~~g~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~a 103 (386)
T PRK09082 29 EHGAINLSQGFPD----FDGPPYLVEALAYAMAAG-HNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEA 103 (386)
T ss_pred hCCEEEecCCCCC----CCCCHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHH
Confidence 4578999999964 556778888888877643 35799889999999999999998778777775 89999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+..++.+++++||+|++++|+|..+...++..|.+++.++++. .++.+|++.+++.++++++++++++|+||||.+++.
T Consensus 104 l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~ 182 (386)
T PRK09082 104 LFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQP-PDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSA 182 (386)
T ss_pred HHHHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCH
Confidence 9999999999999999999999999999999999999999854 357899999999998889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI 278 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~ 278 (301)
+++++|+++|++|++++|+|++|.++.|++....++..+.. ..++|+++||||.|++||+|+||++++. ++
T Consensus 183 ~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~--------~l 254 (386)
T PRK09082 183 ADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPA--------AL 254 (386)
T ss_pred HHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCH--------HH
Confidence 99999999999999999999999999987655555555543 4689999999999999999999999743 58
Q ss_pred HHHHHhhhc-ccCCCcccccccC
Q 022213 279 IDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 279 ~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
++.+++... ...+++.++|.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~q~~~ 277 (386)
T PRK09082 255 SAEFRKVHQYNTFTVNTPAQLAL 277 (386)
T ss_pred HHHHHHHHhhhcCCCChHHHHHH
Confidence 888877654 3456788888753
No 54
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=100.00 E-value=3.2e-40 Score=306.99 Aligned_cols=247 Identities=21% Similarity=0.354 Sum_probs=199.0
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc-----------CCCCCCCCCCCCHHHHHHHHHHHhhhCCC--CCCC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS-----------GKFNCYATNSGIPPARRAIADYLSRDLPY--KLSA 107 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~--~~~~ 107 (301)
+.++|+|+.+++. +.. +.+.+.+++.... ..+..|++..|.++||+++|+|+.++++. .+++
T Consensus 37 p~g~i~L~~~En~----l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~ 111 (468)
T PLN02450 37 PSGIIQMGLAENQ----LSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDP 111 (468)
T ss_pred CCeeEEeehhHhH----hhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcCh
Confidence 4579999999853 222 5555555443210 12345998889999999999999887664 4789
Q ss_pred CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCceEEEeecCCCCCCCCCHHHHHhhccc------C
Q 022213 108 DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQVEVRHFDLLPERNWEVDLDAVEALADK------N 180 (301)
Q Consensus 108 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~ 180 (301)
++|++|+|+++++..++.+++++||.|++++|+|..|...+. ..|++++.+++..++++.++++.+++.+++ +
T Consensus 112 ~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~ 191 (468)
T PLN02450 112 NKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLK 191 (468)
T ss_pred HHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999988777 589999999987677888999999887753 6
Q ss_pred ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc---------CCCCCEEEEecCc
Q 022213 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF---------GSIVPVITLGSIS 251 (301)
Q Consensus 181 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~---------~~~~~vi~~~s~S 251 (301)
++++++++||||||.+++.+++++|+++|++|+++||+||+|+.+.|++..+.++... +...++++++|||
T Consensus 192 ~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~S 271 (468)
T PLN02450 192 VKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLS 271 (468)
T ss_pred eeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEecc
Confidence 7889999999999999999999999999999999999999999998876544443221 1246899999999
Q ss_pred ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
|.|++||+|+||+++++. .+++.+.+... ..++|.++|.++
T Consensus 272 K~~~l~GlRiG~li~~~~-------~l~~~~~~~~~-~~~~s~~~Q~a~ 312 (468)
T PLN02450 272 KDLGLPGFRVGAIYSNDE-------MVVSAATKMSS-FGLVSSQTQYLL 312 (468)
T ss_pred ccCCCCCccEEEEEECCH-------HHHHHHHHHhh-cCCCCHHHHHHH
Confidence 999999999999998642 24555555433 345678888764
No 55
>PRK07324 transaminase; Validated
Probab=100.00 E-value=8.9e-40 Score=296.80 Aligned_cols=239 Identities=25% Similarity=0.364 Sum_probs=205.6
Q ss_pred CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213 39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ 118 (301)
Q Consensus 39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~ 118 (301)
..++++++|+.|+|. ++.|+.+ +++.+++....+ +|++..|.++||+++++++.. +++++|++|+|+++
T Consensus 23 ~~~~~~~~~~~~e~~----~~~~~~~-~~~~~~~~~~~~-~Y~~~~G~~~lr~~ia~~~~~-----~~~~~vi~t~G~~~ 91 (373)
T PRK07324 23 IAESCIDSLTLEELL----ALAGKNP-EAFYQELGQKKL-TYGWIEGSPEFKEAVASLYQN-----VKPENILQTNGATG 91 (373)
T ss_pred cccCCCCCCcHHHHH----hccCcch-HHHHHHHhcCCc-cCCCCCCCHHHHHHHHHHhcC-----CChhhEEEcCChHH
Confidence 357899999999974 5666667 777777765444 899999999999999999842 67899999999999
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213 119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~ 198 (301)
++..++.+++++||+|+++.|+|..+...++..|.+++.+++..+++|.+|++.+++.++++++++++++||||||.+++
T Consensus 92 al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~ 171 (373)
T PRK07324 92 ANFLVLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMD 171 (373)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999977777889999999988888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI 278 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~ 278 (301)
.+++++|+++|++||+++|+||+|.++.+++. ..++... .+++|+++||||.|+++|+|+||++++ +++
T Consensus 172 ~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~~--~~~~I~~~s~SK~~~~~G~RiG~i~~~--------~~l 240 (373)
T PRK07324 172 RAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIADL--YEKGISTNSMSKTYSLPGIRVGWIAAN--------EEV 240 (373)
T ss_pred HHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhhc--cCCEEEEecchhhcCCccceeEEEecC--------HHH
Confidence 99999999999999999999999999888643 3333332 357899999999999999999999983 258
Q ss_pred HHHHHhhhc-ccCCCccccccc
Q 022213 279 IDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 279 ~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
++++++... ...+++.++|.+
T Consensus 241 i~~~~~~~~~~~~~~~~~~q~~ 262 (373)
T PRK07324 241 IDILRKYRDYTMICAGVFDDML 262 (373)
T ss_pred HHHHHHHhCcEEecCChHHHHH
Confidence 888888765 345677777764
No 56
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=100.00 E-value=3.2e-39 Score=301.46 Aligned_cols=250 Identities=19% Similarity=0.348 Sum_probs=197.3
Q ss_pred CCCeeeccCCCCCCCCCCCC-hHHHHHHHHHHHh-------cCCCCCCCCCCCCHHHHHHHHHHHhhhCC--CCCCCCCE
Q 022213 41 PRPVVPLGYGDPTAFPCFRT-AVEAEDAIVDAVR-------SGKFNCYATNSGIPPARRAIADYLSRDLP--YKLSADDV 110 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~-~~~~~~~~~~~~~-------~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~i 110 (301)
+.++|+|+.++... .+.. ++.+.+.....+- -.....|++..|.++||++||+|+.+.+| +.+++++|
T Consensus 45 p~g~i~l~~aEN~l--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~I 122 (496)
T PLN02376 45 PHGIIQMGLAENQL--CLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERV 122 (496)
T ss_pred CCceEEeecchhhh--hHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhE
Confidence 45799999997421 0122 3334333222110 12344688889999999999999998777 56899999
Q ss_pred EEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCceEEEeecCCCCCCCCCHHHHHhhcc------cCccE
Q 022213 111 YVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQVEVRHFDLLPERNWEVDLDAVEALAD------KNTAA 183 (301)
Q Consensus 111 ~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~ 183 (301)
++|+|++++++.+++++++|||.|++++|+|+.+...+. ..|++++.+++..+++++++++.++.++. .++++
T Consensus 123 vit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~ 202 (496)
T PLN02376 123 VMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKG 202 (496)
T ss_pred EEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeE
Confidence 999999999999999999999999999999999988777 58999999998766778899999976531 36788
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-------C-CCEEEEecCcccCC
Q 022213 184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-------I-VPVITLGSISKRWL 255 (301)
Q Consensus 184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-------~-~~vi~~~s~SK~~~ 255 (301)
+++++||||||.+++.+++++|+++|++++++||+||+|..+.|++..+.++..+.. + .++++++||||.|+
T Consensus 203 l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~g 282 (496)
T PLN02376 203 LILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMG 282 (496)
T ss_pred EEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCC
Confidence 999999999999999999999999999999999999999999998766666554421 1 35778999999999
Q ss_pred CCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 256 VPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 256 ~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
+||+|+||+++++. .+.+.++.... ...++.+.|.++
T Consensus 283 lpGlRvG~li~~~~-------~l~~~~~~~~~-~~~vs~~~Q~a~ 319 (496)
T PLN02376 283 LPGFRVGIVYSFND-------SVVSCARKMSS-FGLVSSQTQLML 319 (496)
T ss_pred CCcceEEEEEECCH-------HHHHHHHHHhh-cCCCCHHHHHHH
Confidence 99999999998543 35555544433 335777888754
No 57
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=100.00 E-value=2.8e-39 Score=298.65 Aligned_cols=248 Identities=21% Similarity=0.366 Sum_probs=202.4
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHh----------c-CCCCCCCCCCCCHHHHHHHHHHHhhhCC--CCCC
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVR----------S-GKFNCYATNSGIPPARRAIADYLSRDLP--YKLS 106 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~----------~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~ 106 (301)
++.++|+|+..+.. .+.+.+.+.+++... . ..+..|.+..|...||+++|+|+.+.++ ..++
T Consensus 45 np~g~i~l~~aeN~-----l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~ 119 (447)
T PLN02607 45 NPSGVIQMGLAENQ-----VSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFD 119 (447)
T ss_pred CCCceEEEechhhh-----hhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcC
Confidence 56679999999843 345566666655432 0 1234588888999999999999998766 3588
Q ss_pred CCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCceEEEeecCCCCCCCCCHHHHHhhccc------
Q 022213 107 ADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQVEVRHFDLLPERNWEVDLDAVEALADK------ 179 (301)
Q Consensus 107 ~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 179 (301)
+++|++|+|++++++.++.++++|||.|++++|+|+++...+. ..|+++++++++.+++|.++++.+++++++
T Consensus 120 p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~ 199 (447)
T PLN02607 120 PDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANI 199 (447)
T ss_pred HHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999987776 579999999987777788999999988753
Q ss_pred CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc----C--C-CCCEEEEecCcc
Q 022213 180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF----G--S-IVPVITLGSISK 252 (301)
Q Consensus 180 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~----~--~-~~~vi~~~s~SK 252 (301)
++++++++|||||||.+++++++++|+++|++|++++|+||+|+.+.|++..+.++.++ + . ..++++++||||
T Consensus 200 ~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK 279 (447)
T PLN02607 200 RVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSK 279 (447)
T ss_pred CeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchh
Confidence 67889999999999999999999999999999999999999999999876666665432 1 1 357999999999
Q ss_pred cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
.|+++|+|+||+++.++ +++..++.... ..++|.+.|.++
T Consensus 280 ~fg~~GlRvG~ivs~n~-------~l~~~~~~~~~-~~~~s~~~q~~~ 319 (447)
T PLN02607 280 DLGLPGFRVGTIYSYND-------KVVTTARRMSS-FTLVSSQTQHLL 319 (447)
T ss_pred cCCCCcceEEEEEEcCH-------HHHHHHHHHhh-cCCCCHHHHHHH
Confidence 99999999999998542 46666665543 334567777654
No 58
>PRK08175 aminotransferase; Validated
Probab=100.00 E-value=2.2e-38 Score=290.05 Aligned_cols=245 Identities=20% Similarity=0.352 Sum_probs=203.5
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQ 118 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~ 118 (301)
.++++++|+.|+|. ...++.+.+++.+.+.......|+++.|..+||+++++|+.+.+++.++++ +|++|+|+++
T Consensus 27 ~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~ 102 (395)
T PRK08175 27 RGEDIIDFSMGNPD----GPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKE 102 (395)
T ss_pred cCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence 46789999999975 344566777777766555566899999999999999999998888888887 8999999999
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc---cCccEEEEcCCCCCccc
Q 022213 119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD---KNTAAMVIINPGNPCGN 195 (301)
Q Consensus 119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~nptG~ 195 (301)
++..++..++++||+|++++|+|..+...++..|.+++.++++.++. ..+.+++.++ .+++++++++||||||.
T Consensus 103 ~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~ 179 (395)
T PRK08175 103 GLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD---FFNELERAIRESYPKPKMMILGFPSNPTAQ 179 (395)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCC---cHHHHHHHHhhccCCceEEEEeCCCCCCCC
Confidence 99999999999999999999999998888889999999998865433 3677777665 36788999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCccc
Q 022213 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ 274 (301)
Q Consensus 196 ~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~ 274 (301)
+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.. .+++|+++||||.|++||+|+||+++++
T Consensus 180 ~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~------ 253 (395)
T PRK08175 180 CVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNP------ 253 (395)
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCH------
Confidence 999999999999999999999999999999987655555554432 3468999999999999999999999743
Q ss_pred chhHHHHHHhhhc-ccCCCccccccc
Q 022213 275 KSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 275 ~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
++++++++... ...+++++.|.+
T Consensus 254 --~l~~~~~~~~~~~~~~~~~~~q~~ 277 (395)
T PRK08175 254 --ELVSALARIKSYHDYGTFTPLQVA 277 (395)
T ss_pred --HHHHHHHHHHhhcccCCCcHHHHH
Confidence 47788877654 234566667664
No 59
>PRK09275 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.1e-38 Score=296.22 Aligned_cols=215 Identities=21% Similarity=0.328 Sum_probs=176.4
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhh-hCCCCC-C--CCCEEEcCCHHH
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSR-DLPYKL-S--ADDVYVTLGCKQ 118 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~-~--~~~i~~t~g~~~ 118 (301)
++|+|+.|+|+ +++|+.+.+.+ +.+.. .+|+++.|.+++|++|++++.+ .++... . .++|++|+|+++
T Consensus 101 ~~i~l~~g~p~----~~~~~~v~e~~-~~~~~---~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~ 172 (527)
T PRK09275 101 DAVSYVRDQLG----FDADEFVYELV-DGIIG---DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTA 172 (527)
T ss_pred HHHhhcCCCCC----CCCCHHHHHHH-HHHhc---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence 47999999964 77888888855 44443 2699999999999999995544 333222 2 348999999999
Q ss_pred HHHHHHHH-----hcCCCCEEEEcCCCCcchHHHHHhcC--ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCC
Q 022213 119 AVEVILSV-----LARPGANVLLPRPGWPYYEGIAQRKQ--VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGN 191 (301)
Q Consensus 119 al~~~~~~-----l~~~gd~Vl~~~p~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~n 191 (301)
++..++.+ +++|||+|++++|+|..|...++..| .+++.++..++++|.++.++++++++++++++++++|||
T Consensus 173 al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~N 252 (527)
T PRK09275 173 AMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSN 252 (527)
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcC
Confidence 99999987 68999999999999999998887775 555666655667799999999999888999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHh--CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 192 PCGNVFTYHHLQEIAEMARK--LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 192 ptG~~~~~~~l~~i~~~~~~--~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
|||.+++.+++++|+++|++ ++++||+||+|..+.+. +.++.... ..++|+++||||.|+++|||+||+++++.
T Consensus 253 PTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~s~~~~~-~~~~I~v~SfSK~f~mtG~RlG~i~~~~~ 328 (527)
T PRK09275 253 PPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD---FRSLFAVL-PYNTILVYSFSKYFGATGWRLGVIALHED 328 (527)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc---ccCHHHhC-CCCEEEEeehhhhccCcHhHHhhhhcCch
Confidence 99999999999999999964 59999999999998752 23332221 25899999999999999999999998654
No 60
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=100.00 E-value=6.4e-39 Score=290.17 Aligned_cols=234 Identities=21% Similarity=0.320 Sum_probs=197.6
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
..++|+|+.|++ .+++|+.+.+++.+.+.. ...|+ ..|..+||+++++++ ++++++|++|+|+++++
T Consensus 28 ~~~~i~l~~nen----~~~~~~~v~~a~~~~~~~--~~~Yp-~~g~~~Lr~aia~~~------~~~~~~I~vt~Gs~e~i 94 (366)
T PRK01533 28 DHSFVKLASNEN----PFGCSPRVLDELQKSWLD--HALYP-DGGATTLRQTIANKL------HVKMEQVLCGSGLDEVI 94 (366)
T ss_pred CCceEEeCCCCC----CCCCCHHHHHHHHHHHHh--cCcCC-CCCHHHHHHHHHHHh------CCCcceEEECCCHHHHH
Confidence 568999999986 378888999998877653 23465 468999999999998 57899999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
..++++++++||+|++++|+|..|...++..|.+++.++++ ++.+|++.+++.++++++++++++||||||.+++.+
T Consensus 95 ~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~ 171 (366)
T PRK01533 95 QIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDR 171 (366)
T ss_pred HHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHH
Confidence 99999999999999999999999999999999999999873 346999999998888899999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
++++|+++|++++ ++|+||+|.++.+.+.....+..++..+++|+++||||.|++||+|+||++++. ++++
T Consensus 172 ~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~--------~~~~ 242 (366)
T PRK01533 172 KLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHE--------ELIE 242 (366)
T ss_pred HHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCH--------HHHH
Confidence 9999999998876 577799999887654322333344455689999999999999999999998742 5888
Q ss_pred HHHhhhcccCCCcccccccC
Q 022213 281 SIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 281 ~~~~~~~~~~~~~~~~q~~~ 300 (301)
+++.... ..+++.++|.++
T Consensus 243 ~l~~~~~-~~~~~~~~q~aa 261 (366)
T PRK01533 243 KLNVVRL-PFNVSSLAQKAA 261 (366)
T ss_pred HHHHhcC-CCCcCHHHHHHH
Confidence 8877654 457888888764
No 61
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=100.00 E-value=6.3e-38 Score=287.54 Aligned_cols=216 Identities=23% Similarity=0.327 Sum_probs=179.9
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC----CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG----KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
.+.++|+|+.|+|. +++++.+.+++.+.+++. ....|++..|.++||+++|+++.+. .+++++|++|+|
T Consensus 31 ~~~~~i~l~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d~I~it~G 103 (402)
T TIGR03542 31 PSADIIRLGIGDTT----QPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPEEIFISDG 103 (402)
T ss_pred CCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHHHEEECCC
Confidence 46789999999964 567788888888877642 2356988889999999999986431 378899999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCc-----------eEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213 116 CKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQV-----------EVRHFDLLPERNWEVDLDAVEALADKNTAAM 184 (301)
Q Consensus 116 ~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 184 (301)
+++++..+. .++.+||+|++++|+|..|...++..|+ ++++++++.+.++..+++. ..+++++
T Consensus 104 a~~al~~l~-~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~i 177 (402)
T TIGR03542 104 AKCDVFRLQ-SLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EPKIDII 177 (402)
T ss_pred cHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc-----cCCceEE
Confidence 999999864 5668999999999999999999999999 8888887655565555422 1468899
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEE
Q 022213 185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGW 263 (301)
Q Consensus 185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~ 263 (301)
++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++..+.++..++. ..++|+++||||.|++||+|+||
T Consensus 178 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~ 257 (402)
T TIGR03542 178 YLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGW 257 (402)
T ss_pred EEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEE
Confidence 99999999999999999999999999999999999999999886544445555544 35789999999999999999999
Q ss_pred EEeeC
Q 022213 264 LVTND 268 (301)
Q Consensus 264 ~~~~~ 268 (301)
++++.
T Consensus 258 ~i~~~ 262 (402)
T TIGR03542 258 TVVPK 262 (402)
T ss_pred EEecH
Confidence 99854
No 62
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=7.3e-38 Score=284.50 Aligned_cols=237 Identities=19% Similarity=0.340 Sum_probs=196.3
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-CCCCCCCCCCHHHHHHHHHHHhhhC--CCCCCCCCEEEcCCHHHH
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-FNCYATNSGIPPARRAIADYLSRDL--PYKLSADDVYVTLGCKQA 119 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~l~~~~--~~~~~~~~i~~t~g~~~a 119 (301)
.+++|+.|+| .+++|+.+.+++.+.+.... ...|++ .|..+||+++++|+.+.+ ++.+++++|++|+|++++
T Consensus 29 ~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~a 103 (374)
T PRK02610 29 QLDRLDTNEF----PYDLPPDLKQKLAWLYQQGIESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDEL 103 (374)
T ss_pred ceeEecCCCC----CCCCCHHHHHHHHHHHhhcccccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHH
Confidence 5899999996 37888899999988776532 346865 699999999999998765 466899999999999999
Q ss_pred HHHHHHHhcCCCC-EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcCCCCCcc
Q 022213 120 VEVILSVLARPGA-NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIINPGNPCG 194 (301)
Q Consensus 120 l~~~~~~l~~~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~nptG 194 (301)
+..++.+++.+|| .|++++|+|..|...++..|++++.++++. +++++|++++++.++ .+++++++++||||||
T Consensus 104 l~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG 182 (374)
T PRK02610 104 IRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDP-ETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTG 182 (374)
T ss_pred HHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCc-ccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCC
Confidence 9998888888886 899999999999999999999999998743 357899999998876 4789999999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCccc
Q 022213 195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ 274 (301)
Q Consensus 195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~ 274 (301)
.+++.+++++|+++| ++++||+||+|.++.+.. .+..+....++|+++||||.|++||+|+||++++.
T Consensus 183 ~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~----~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~------ 250 (374)
T PRK02610 183 NPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT----LVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHP------ 250 (374)
T ss_pred CCCCHHHHHHHHhcc--CCcEEEEeccccccCccc----hHHHHhcCCCEEEEEecchhccCcccceeeeecCH------
Confidence 999999999999876 389999999999976421 12233334578999999999999999999999743
Q ss_pred chhHHHHHHhhhcccCCCcccccccC
Q 022213 275 KSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
++++++..... ..+.+.++|.++
T Consensus 251 --~l~~~l~~~~~-~~~~~~~~q~a~ 273 (374)
T PRK02610 251 --ELIAVLEKVRL-PYNLPSFSQLAA 273 (374)
T ss_pred --HHHHHHHHhcC-CCCCCHHHHHHH
Confidence 47777776653 345677888753
No 63
>PRK06836 aspartate aminotransferase; Provisional
Probab=100.00 E-value=6.8e-37 Score=280.00 Aligned_cols=221 Identities=25% Similarity=0.401 Sum_probs=194.1
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ 118 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~ 118 (301)
..++++|+.|+|. +++++.+.+++.+.++.. ...+|++..|..++|+++++++.+.++..+++++|++|+|+++
T Consensus 32 ~~~~~~l~~g~p~----~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~ 107 (394)
T PRK06836 32 ADNVFDFSLGNPS----VPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAG 107 (394)
T ss_pred CCCeEEecCcCCC----CCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHH
Confidence 4678999999864 566788889888777642 2568988899999999999999988888889999999999999
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213 119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~ 198 (301)
++..++++++++||.|++++|+|..+...++..|++++.++++.+ ++.+|++++++.++++++++++++|+||||.+++
T Consensus 108 al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~ 186 (394)
T PRK06836 108 ALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTD-TFQPDLDALEAAITPKTKAVIINSPNNPTGVVYS 186 (394)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCc-cCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCC
Confidence 999999999999999999999999999999999999999998653 4679999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHh------CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 199 YHHLQEIAEMARK------LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 199 ~~~l~~i~~~~~~------~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
.+++++|+++|++ |++++|+|++|.++.+++....++.. ..+++++++||||.|++||+|+||+++++
T Consensus 187 ~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~pGlRiG~~~~~~ 260 (394)
T PRK06836 187 EETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFK--YYDNSIVVYSFSKSLSLPGERIGYIAVNP 260 (394)
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHH--ccCcEEEEecchhhccCcceeeEEEecCH
Confidence 9999999999999 89999999999999886544333322 23579999999999999999999999864
No 64
>PLN02397 aspartate transaminase
Probab=100.00 E-value=3e-37 Score=284.24 Aligned_cols=276 Identities=15% Similarity=0.170 Sum_probs=192.8
Q ss_pred hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCC-CCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q 022213 17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGD-PTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIAD 95 (301)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~-p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 95 (301)
++..+.++|..+.+...+ ...+.+|+|+.|+ |+..+....-+.+.++....+..+...+|++..|.++||+++++
T Consensus 27 ~~~~~~~~i~~~~~~~~~----~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~ 102 (423)
T PLN02397 27 VEPAPPDPILGVTEAFLA----DPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAK 102 (423)
T ss_pred CCcCCCChHHHHHHHHhh----CCCcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHH
Confidence 456667777777664422 2356789999996 44211101123455555444444445579999999999999999
Q ss_pred HHhhhCCCCCCCCCE-----EEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCH
Q 022213 96 YLSRDLPYKLSADDV-----YVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL 170 (301)
Q Consensus 96 ~l~~~~~~~~~~~~i-----~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 170 (301)
|+.+......++++| +.++|+. ++...+..++.|||+|++++|+|+.|...++..|.+++.+++...+++++|+
T Consensus 103 ~~~~~~~~~~~~~~i~~~~i~~g~Ga~-~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~ 181 (423)
T PLN02397 103 LAYGADSPAIKENRVATVQCLSGTGSL-RLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDF 181 (423)
T ss_pred HHcCCCCchhhcCeeEeeecccchHHH-HHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCH
Confidence 996643323333343 3344443 3444555555799999999999999999999999999999874444578999
Q ss_pred HHHHhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC--CCCCCccccCC-CCCE
Q 022213 171 DAVEALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS--IPYTPMGLFGS-IVPV 244 (301)
Q Consensus 171 ~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~--~~~~~~~~~~~-~~~v 244 (301)
+.+++.+. .+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++ ....++..+.. ..++
T Consensus 182 ~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v 261 (423)
T PLN02397 182 DGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEI 261 (423)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcE
Confidence 98887664 356778889999999999999999999999999999999999999999864 12233333322 2469
Q ss_pred EEEecCcccCCCCcceeEEEE--eeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 245 ITLGSISKRWLVPGWRFGWLV--TNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 245 i~~~s~SK~~~~~G~rvG~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
|+++||||+|+++|+|+||++ +++.. .. ..+.+.++...+ ...+++.+.|.++
T Consensus 262 I~~~SfSK~~~~~G~RvG~~v~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~q~~~ 317 (423)
T PLN02397 262 LVAQSYAKNMGLYGERVGALSVVCKSAD-VA--VRVKSQLKLIARPMYSNPPIHGASIV 317 (423)
T ss_pred EEEEECcccCCCccccceEEEEEeCCHH-HH--HHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 999999999999999999996 32211 00 112334444432 3446777777653
No 65
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=100.00 E-value=4.5e-37 Score=278.47 Aligned_cols=234 Identities=25% Similarity=0.392 Sum_probs=190.2
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCC-CCCCCEEEcCCHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYK-LSADDVYVTLGCKQ 118 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~~i~~t~g~~~ 118 (301)
.+.++|+|+.|+|. .+.++.+.+++.+... ..+|+++.|.++||+++++|+.+.+++. +++++|++|+|+++
T Consensus 25 ~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~ 97 (364)
T PRK07865 25 HPDGIVDLSVGTPV----DPVPPVIQEALAAAAD---APGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKE 97 (364)
T ss_pred cCCCEEEcCCCCCC----CCCCHHHHHHHHHHHh---hCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHH
Confidence 45679999999964 4556778888776543 2379998999999999999999988886 89999999999999
Q ss_pred HHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCC
Q 022213 119 AVEVILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVF 197 (301)
Q Consensus 119 al~~~~~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~ 197 (301)
++..++..+ +++||.|++++|+|..+...++..|.++..++. ++.++ ..+++++++++||||||.++
T Consensus 98 ~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~~~l~---~~~~~~v~~~~p~NPtG~~~ 165 (364)
T PRK07865 98 LVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---------LTELG---PQRPALIWLNSPSNPTGRVL 165 (364)
T ss_pred HHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------hhhCC---cccceEEEEcCCCCCCCccC
Confidence 999988888 799999999999999999999999999887641 22222 24678999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc---CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCccc
Q 022213 198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF---GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ 274 (301)
Q Consensus 198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~---~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~ 274 (301)
+.+++++|+++|+++|++||+||+|.++.+++.....+... ....++|+++||||.|++||+|+||+++++
T Consensus 166 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~------ 239 (364)
T PRK07865 166 GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDP------ 239 (364)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCH------
Confidence 99999999999999999999999999988865322222111 123579999999999999999999998743
Q ss_pred chhHHHHHHhhhc-ccCCCcccccccC
Q 022213 275 KSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 275 ~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
+++++++.... ...+++.+.|.++
T Consensus 240 --~~~~~~~~~~~~~~~~~~~~~q~~~ 264 (364)
T PRK07865 240 --ALVAELLEVRKHAGMMVPAPVQAAM 264 (364)
T ss_pred --HHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 47777776543 3456788888653
No 66
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=100.00 E-value=1.4e-37 Score=280.59 Aligned_cols=235 Identities=18% Similarity=0.323 Sum_probs=194.3
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
.+++++|+.|.|. +++|+.+.+++.+.+. ....|++. +..+||+++++|+ ++++++|++|+|+++++
T Consensus 18 ~~~~~~l~~~~~~----~~~p~~~~~a~~~~~~--~~~~Y~~~-~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~l 84 (354)
T PRK06358 18 KNMILDFSANINP----LGVPESLKQAITENLD--KLVEYPDP-DYLELRKRIASFE------QLDLENVILGNGATELI 84 (354)
T ss_pred ccceEEecCCCCC----CCCCHHHHHHHHHHHH--hhhcCCCc-cHHHHHHHHHHHh------CCChhhEEECCCHHHHH
Confidence 3558999999753 4567888898888764 35578764 6889999999998 57899999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
..+++++ .+ +.|++++|+|..|...++..|.+++.++++.+++|.+| +++.+.+..+++++++++||||||.+++.+
T Consensus 85 ~~~~~~~-~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~ 161 (354)
T PRK06358 85 FNIVKVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKE 161 (354)
T ss_pred HHHHHHh-CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHH
Confidence 9999987 44 68999999999999999999999999998766678899 666666666789999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
++++|+++|+++++++|+||+|.++.+++.....+..++..+++|+++||||.|++||+|+||++++++ .++.
T Consensus 162 ~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~-------~~~~ 234 (354)
T PRK06358 162 EMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNK-------NLAE 234 (354)
T ss_pred HHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCH-------HHHH
Confidence 999999999999999999999999998764333344445557899999999999999999999998543 3677
Q ss_pred HHHhhhcccCCCccccccc
Q 022213 281 SIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 281 ~~~~~~~~~~~~~~~~q~~ 299 (301)
++++... ..+.+.+.|.+
T Consensus 235 ~~~~~~~-~~~~~~~~q~~ 252 (354)
T PRK06358 235 KLLQMRE-PWSINTFADLA 252 (354)
T ss_pred HHHHhCC-CCcchHHHHHH
Confidence 7776654 34566666654
No 67
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=2.2e-37 Score=279.85 Aligned_cols=233 Identities=23% Similarity=0.375 Sum_probs=192.8
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA 119 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a 119 (301)
.+.++|+|+.|++. +++++.+.+++.+.+.. ...|++ .|..+||+++++++ ++++++|++|+|++++
T Consensus 28 ~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~Y~~-~~~~~lr~~ia~~~------~~~~~~I~it~G~~~a 94 (357)
T PRK14809 28 DPDDLVKLSSNENP----HGPSPAAVEAIREAAER--VHSYPK-ASHADLTAALADRW------DVSPEQVWLANGGDGA 94 (357)
T ss_pred CccceeEecCCCCC----CCCCHHHHHHHHHHHhh--hhcCCC-CCHHHHHHHHHHHh------CCCcceEEECCCHHHH
Confidence 35689999999863 56677888888877652 457875 68899999999998 5789999999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+..++++++++||.|++++|+|..|.......|.+++.+++..++++.++.+.+.+.. ++++++++++||||||.+++.
T Consensus 95 l~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~ 173 (357)
T PRK14809 95 LDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPL 173 (357)
T ss_pred HHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCH
Confidence 9999999999999999999999988888888999999999866667888888887765 357899999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
+++++|+++|++ +++||+||+|.++.+.+. .+......+++|+++||||.|++||+|+||+++++ +++
T Consensus 174 ~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~---~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~--------~~~ 241 (357)
T PRK14809 174 DEVEALAERTDE-ETLVVVDEAYGEFAERPS---AVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPE--------EWA 241 (357)
T ss_pred HHHHHHHHhCcc-CcEEEEechhhhccCCch---hHHHHhhCCCEEEEecchhHhcCcchhheeeecCH--------HHH
Confidence 999999999875 789999999999886431 22233345689999999999999999999999854 477
Q ss_pred HHHHhhhcccCCCccccccc
Q 022213 280 DSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~ 299 (301)
+++++... ..+.+.+.|.+
T Consensus 242 ~~~~~~~~-~~~~~~~~~~~ 260 (357)
T PRK14809 242 DAYARVNT-PFAASELACRA 260 (357)
T ss_pred HHHHHhCC-CCCCCHHHHHH
Confidence 77776643 34566676654
No 68
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=100.00 E-value=2.9e-37 Score=285.57 Aligned_cols=236 Identities=16% Similarity=0.213 Sum_probs=192.9
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
+..+++|+.|+|. .+.++.+.+++.+... ....|++..|..+||+++++++.+..+ .+++|++|+|+++++
T Consensus 84 ~~~~i~L~~g~p~----~~~~p~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~~al 154 (431)
T PRK15481 84 GTPLHDLAGGNPD----PQRLPDLSRYFARLSR--TPRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAIDAI 154 (431)
T ss_pred cchhhhhhcCCCC----hhHhHHHHHHHHHhhh--hhhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcHHHH
Confidence 3468999999864 4444567777766543 234799999999999999999976322 346999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEc-CCCCCcccCCCH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII-NPGNPCGNVFTY 199 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~-~p~nptG~~~~~ 199 (301)
..+++++++|||.|++++|+|..|...++..|++++.++++. + ++|++.++++++.++++++++ +||||||.+++.
T Consensus 155 ~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-~--g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~ 231 (431)
T PRK15481 155 ERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDA-E--GMQPEKLERALAQGARAVILTPRAHNPTGCSLSA 231 (431)
T ss_pred HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCC-C--CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCH
Confidence 999999999999999999999999999999999999999843 2 389999999887788888886 999999999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213 200 HHLQEIAEMARKL-RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI 278 (301)
Q Consensus 200 ~~l~~i~~~~~~~-~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~ 278 (301)
+++++|+++|+++ +++||+||+|.++.+.+. ...+. . ...++|+++||||.|+ ||+|+||++++. ++
T Consensus 232 ~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~-~~~~~-~-~~~~vi~~~SfSK~~~-~GlRiG~~i~~~--------~~ 299 (431)
T PRK15481 232 RRAAALRNLLARYPQVLVIIDDHFALLSSSPY-HSVIP-Q-TTQRWALIRSVSKALG-PDLRLAFVASDS--------AT 299 (431)
T ss_pred HHHHHHHHHHHhcCCceEEecCchhhhccCCC-CCCCc-C-CCCCEEEEeeeccccC-CCceeEEEeCCH--------HH
Confidence 9999999999999 999999999999986532 22222 1 2358999999999999 999999999743 47
Q ss_pred HHHHHhhhc-ccCCCcccccccC
Q 022213 279 IDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 279 ~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
+++++.... ...+++.+.|.++
T Consensus 300 ~~~~~~~~~~~~~~~s~~~q~a~ 322 (431)
T PRK15481 300 SARLRLRLNSGTQWVSHLLQDLV 322 (431)
T ss_pred HHHHHHHHhccccCCCHHHHHHH
Confidence 777766543 2346788888764
No 69
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=100.00 E-value=6.3e-38 Score=283.90 Aligned_cols=248 Identities=31% Similarity=0.521 Sum_probs=206.2
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHH-HHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHH
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVD-AVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAV 120 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~-~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al 120 (301)
.+|+|+.|++......++++...+++.+ .........|++..|.++||+++++|+.+..+...+++ +|++++|+++++
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 6899999997632222345556666554 33445567899999999999999999997778788899 999999999999
Q ss_pred HHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCc
Q 022213 121 EVILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPC 193 (301)
Q Consensus 121 ~~~~~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~npt 193 (301)
..++..+ .++||+|++++|+|..+...++..|++++.+++..++++.+|++.|++.+++ +++++++++|+|||
T Consensus 82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPt 161 (363)
T PF00155_consen 82 FLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPT 161 (363)
T ss_dssp HHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTT
T ss_pred hhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccc
Confidence 9999999 7899999999999999999999999999999987778889999999998876 56789999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC-ccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCc
Q 022213 194 GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP-MGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGI 272 (301)
Q Consensus 194 G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~-~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~ 272 (301)
|.+++.+++++|+++|++||+++|+||+|.++.++...+.+ ...++...++|+++|+||.|+++|+|+||++++.
T Consensus 162 G~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~---- 237 (363)
T PF00155_consen 162 GSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPP---- 237 (363)
T ss_dssp TBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEH----
T ss_pred ccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccchh----
Confidence 99999999999999999999999999999999998654433 3444555569999999999999999999999843
Q ss_pred ccchhHHHHHHhhhcccCCCccccccc
Q 022213 273 FQKSGIIDSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~q~~ 299 (301)
+++++++........ +.+.|.+
T Consensus 238 ----~~~~~l~~~~~~~~~-~~~~~~~ 259 (363)
T PF00155_consen 238 ----ELIERLRRFQRSGLS-SSPMQAA 259 (363)
T ss_dssp ----HHHHHHHHHHHHTTS-SHHHHHH
T ss_pred ----hhhhhhhhccccccc-cchhhHH
Confidence 588888887654333 6666654
No 70
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=100.00 E-value=2.6e-36 Score=272.79 Aligned_cols=251 Identities=24% Similarity=0.348 Sum_probs=199.0
Q ss_pred CcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhh
Q 022213 21 PAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD 100 (301)
Q Consensus 21 ~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~ 100 (301)
+..+++.+++...+. +..++++|+|+.|+|. +++++.+.+++.+... ...|+++.|.++||+++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~--~~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~ 72 (357)
T TIGR03539 2 PDFPWDSLAPYKAKA--ASHPDGIVDLSVGTPV----DPVPPLIRAALAAAAD---APGYPQTWGTPELREAIVDWLERR 72 (357)
T ss_pred CcchHHHHHHHHHHh--hhCCCCeEEccCCCCC----CCCCHHHHHHHHHHHh---hCCCCcccCCHHHHHHHHHHHHHh
Confidence 345666777655443 2356789999999974 5567778888776543 347999899999999999999998
Q ss_pred CCCC-CCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc
Q 022213 101 LPYK-LSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD 178 (301)
Q Consensus 101 ~~~~-~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (301)
+++. +++++|++|+|+++++..++..+ +++||.|++++|+|..+...++..|.+++.++ +++.+. .
T Consensus 73 ~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l~---~ 140 (357)
T TIGR03539 73 RGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD---------DPTELD---P 140 (357)
T ss_pred cCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC---------ChhhcC---c
Confidence 8886 99999999999999999999888 69999999999999999888888999887663 222222 2
Q ss_pred cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc--c-CCCCCEEEEecCcccCC
Q 022213 179 KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL--F-GSIVPVITLGSISKRWL 255 (301)
Q Consensus 179 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~--~-~~~~~vi~~~s~SK~~~ 255 (301)
.+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.|++.....+.. . ....++|+++||||.|+
T Consensus 141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 220 (357)
T TIGR03539 141 VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSN 220 (357)
T ss_pred cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccC
Confidence 46889999999999999999999999999999999999999999998886532222211 0 11247999999999999
Q ss_pred CCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 256 VPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 256 ~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
++|+|+||++++. +++.+++.... ...+++.+.|.++
T Consensus 221 ~~G~R~G~~i~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~ 258 (357)
T TIGR03539 221 LAGYRAGFVAGDP--------ALVAELLTVRKHAGLMVPAPVQAAM 258 (357)
T ss_pred CCceeEEEEecCH--------HHHHHHHHHHhhcccCCCHHHHHHH
Confidence 9999999998643 47777766543 3456778888653
No 71
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=100.00 E-value=8.6e-37 Score=283.23 Aligned_cols=214 Identities=20% Similarity=0.324 Sum_probs=172.1
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH-HHHhhhCCCC-CCCC--CEEEcCCHHH
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA-DYLSRDLPYK-LSAD--DVYVTLGCKQ 118 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia-~~l~~~~~~~-~~~~--~i~~t~g~~~ 118 (301)
++|+|+.|+|+ +++++.+ .++.+.+.+. +|+++.|..+++++++ +|+.+.++.. ..++ +|++|+|+++
T Consensus 95 ~~i~l~~g~p~----~~~~~~~-~~~~~~~~~~---~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~ 166 (521)
T TIGR03801 95 DIISYVIDQLG----FDPDAFL-YEMCDGIIGD---NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTA 166 (521)
T ss_pred HHHhhcCCCCC----CCCCHHH-HHHHHHhhcC---CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence 47999999975 6655555 4444444322 5987778888887777 5666654433 3333 8999999999
Q ss_pred HHHHHHHH-----hcCCCCEEEEcCCCCcchHHHHHhc--CceEEEeecCCCCC-----CCCCHHHHHhhcccCccEEEE
Q 022213 119 AVEVILSV-----LARPGANVLLPRPGWPYYEGIAQRK--QVEVRHFDLLPERN-----WEVDLDAVEALADKNTAAMVI 186 (301)
Q Consensus 119 al~~~~~~-----l~~~gd~Vl~~~p~~~~~~~~~~~~--g~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~v~l 186 (301)
|+..++.+ +++|||+|++++|+|..|...++.. |.+++.++....++ |.+|.++++++++++++++++
T Consensus 167 al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l 246 (521)
T TIGR03801 167 AMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFV 246 (521)
T ss_pred HHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEE
Confidence 99999887 6899999999999999998887765 67777777754433 899999999988888999999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhC--CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213 187 INPGNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL 264 (301)
Q Consensus 187 ~~p~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~ 264 (301)
++||||||.+++.+++++|+++|++| +++||+||+|..+.+. +.++.... ..++|+++||||.|+++|||+||+
T Consensus 247 ~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~sl~~~~-~~~vI~v~SfSK~fg~~G~RlG~i 322 (521)
T TIGR03801 247 VNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD---FRSLFAEL-PYNTIGVYSFSKYFGATGWRLGTI 322 (521)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc---ccchhhhC-CCCEEEEEcchhhccCchhhhhhh
Confidence 99999999999999999999999986 8999999999998752 33333322 247999999999999999999999
Q ss_pred EeeC
Q 022213 265 VTND 268 (301)
Q Consensus 265 ~~~~ 268 (301)
++++
T Consensus 323 ~~~~ 326 (521)
T TIGR03801 323 ALHK 326 (521)
T ss_pred hcCc
Confidence 9865
No 72
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=3.6e-37 Score=279.55 Aligned_cols=237 Identities=19% Similarity=0.312 Sum_probs=197.2
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS--GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
..|+|+.|+| .+++|+.+.+++.+.+.. .....|++ .|..+||+++++|+.+.++.++++++|++|+|+++++
T Consensus 27 ~~i~l~~~~~----~~~~~~~~~~al~~~l~~~~~~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l 101 (368)
T PRK03317 27 VPVRLNTNEN----PYPPSPALVADIAEAVAEAAAGLNRYPD-RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEIL 101 (368)
T ss_pred ceeEecCCCC----CCCCCHHHHHHHHHHHhhhhhhhccCCC-CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHH
Confidence 5699999986 378889999999887753 23557866 5889999999999999888889999999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~ 199 (301)
..++++++++||.|+++.|+|..|...++..|.+++.++. .+++++|++.+++++++ +++++++++||||||.+++.
T Consensus 102 ~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~ 179 (368)
T PRK03317 102 QQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPR--AADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPL 179 (368)
T ss_pred HHHHHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEccc--CCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCH
Confidence 9999999999999999999999999999999998887765 34678999999998864 67889999999999999998
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
+++++|++.| ++++|+||+|.++.+.+. .......+...++|+++||||.|+++|+|+||++++. +++
T Consensus 180 ~~l~~l~~~~---~~~lI~DE~y~~~~~~~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~--------~~~ 247 (368)
T PRK03317 180 DDVEAILDAA---PGIVVVDEAYAEFRRSGT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAP--------AVV 247 (368)
T ss_pred HHHHHHHHHC---CceEEEeCCchhhcccCC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCH--------HHH
Confidence 8888888866 689999999999876542 2222223334579999999999999999999999743 477
Q ss_pred HHHHhhhcccCCCccccccc
Q 022213 280 DSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~ 299 (301)
++++.... ..+.++++|.+
T Consensus 248 ~~l~~~~~-~~~~s~~~~~a 266 (368)
T PRK03317 248 DALRLVRL-PYHLSAVTQAA 266 (368)
T ss_pred HHHHhcCC-CCCCCHHHHHH
Confidence 88876553 34677788765
No 73
>PLN02672 methionine S-methyltransferase
Probab=100.00 E-value=1.5e-36 Score=297.88 Aligned_cols=261 Identities=14% Similarity=0.242 Sum_probs=210.7
Q ss_pred ccccchhhhcCCcccHHHHHHHHHhhcc----cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCC
Q 022213 10 GFEDKQEHKAAPAVTVKTSLASIIDSVN----KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSG 85 (301)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g 85 (301)
+++.+++++....+++...+.+.....+ ...++++|+|+.|+| .+++|+.+.+++.+.+... .| ..|
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~vI~LsinE~----d~ppPp~V~eAi~eal~~~---~~--s~g 731 (1082)
T PLN02672 661 QERLPEEEESSKFIGFSSSARSALKEAELSVSGSQESSLIHMDVDES----FLPVPSAVKASIFESFVRQ---NI--SES 731 (1082)
T ss_pred ccccchhhhhHhhhCCCchhHHHHHhcccCCcccCCCCEEEEeCCCC----CCCCCHHHHHHHHHHHhhc---CC--CCC
Confidence 4455666666666666554444443322 234678999999996 4788999999998877532 22 345
Q ss_pred CHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCC
Q 022213 86 IPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER 164 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~ 164 (301)
.+++|+++++++.+++|+..++ ++|++|+|+++++..++++++++||.|+++.|+|+.|...++..|.+++.+++..++
T Consensus 732 ~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~ 811 (1082)
T PLN02672 732 ETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSD 811 (1082)
T ss_pred ChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEeccccc
Confidence 6789999999999988887765 589999999999999999999999999999999999999999999999999997667
Q ss_pred CCCCCHHHHHhhccc-CccEEEEcCCC-CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC--CCcc----
Q 022213 165 NWEVDLDAVEALADK-NTAAMVIINPG-NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY--TPMG---- 236 (301)
Q Consensus 165 ~~~~~~~~l~~~~~~-~~~~v~l~~p~-nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~---- 236 (301)
+|.+|.+.++++++. +.+.+++++|| ||||.+++.+++++|+++|++|+++||+||+|.++.|++... .++.
T Consensus 812 gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~ 891 (1082)
T PLN02672 812 GFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILS 891 (1082)
T ss_pred CCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHH
Confidence 899999999999866 45688999997 999999999999999999999999999999999999865321 1111
Q ss_pred ccCC---CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 237 LFGS---IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 237 ~~~~---~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
.++. ..+||+++||||.|++||+|+||++++++ +++++++...
T Consensus 892 ~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~-------eLi~~l~~~~ 937 (1082)
T PLN02672 892 RLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDS-------VLIDAFHSAP 937 (1082)
T ss_pred HhccccCCceEEEEeCcHHhhccHHHHheeEEeCCH-------HHHHHHHHhh
Confidence 1221 23799999999999999999999998653 3777777653
No 74
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=5.2e-37 Score=277.64 Aligned_cols=234 Identities=21% Similarity=0.308 Sum_probs=196.1
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
..++|+|+.|+|. +++++.+.+++.+.++. . .|.+..|..++|+++++++ ++++++|++|+|+++++
T Consensus 28 ~~~~i~l~~n~~~----~~~~~~v~~a~~~~~~~--~-~~~p~~g~~~lr~~ia~~~------~~~~~~i~~t~G~~~~l 94 (359)
T PRK03158 28 LEKIVKLASNENP----YGPSPKVKEAIAAHLDE--L-ALYPDGYAPELRTKVAKHL------GVDEEQLLFGAGLDEVI 94 (359)
T ss_pred CCceEEecCCCCC----CCCCHHHHHHHHHHHHH--h-hcCCCCcHHHHHHHHHHHh------CCCHHHEEECCCHHHHH
Confidence 3478999999863 55677888988877653 2 4555579999999999998 46789999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
..++++++++||.|++++|+|..+...+...|.++..+++. ++.+|++.+++.++++++++++++||||||.+++.+
T Consensus 95 ~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~ 171 (359)
T PRK03158 95 QMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHE 171 (359)
T ss_pred HHHHHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHH
Confidence 99999999999999999999999998899999999999885 356899999998888889999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
++.++++.|+ +++++|+||+|.++.+++.....+...+..+++|+++||||.|+++|+|+||++++. ++++
T Consensus 172 ~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~--------~~~~ 242 (359)
T PRK03158 172 ELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE--------ELIE 242 (359)
T ss_pred HHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH--------HHHH
Confidence 9999998874 699999999999988765433333444445689999999999999999999999743 4778
Q ss_pred HHHhhhcccCCCcccccccC
Q 022213 281 SIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 281 ~~~~~~~~~~~~~~~~q~~~ 300 (301)
+++..... .+++.++|.++
T Consensus 243 ~~~~~~~~-~~~~~~~q~~~ 261 (359)
T PRK03158 243 KLNIARPP-FNTTRIAQYAA 261 (359)
T ss_pred HHHHhcCC-CCCCHHHHHHH
Confidence 88776543 46788888764
No 75
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=6e-37 Score=278.29 Aligned_cols=235 Identities=23% Similarity=0.366 Sum_probs=193.6
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
..++|+|+.|.|. +.+++.+.+++.+... ...+|++..| .+||+++++++ ++++++|++|+|+++++
T Consensus 35 ~~~~i~l~~~~~~----~~~~~~~~~al~~~~~--~~~~Y~~~~g-~~lr~~ia~~~------~~~~~~i~~t~G~~~~l 101 (371)
T PRK05166 35 VPRIAKLGSNENP----LGPSPAVRRAFADIAE--LLRLYPDPQG-RALREAIAART------GVPADRIILGNGSEDLI 101 (371)
T ss_pred CcceEEcCCCCCC----CCCCHHHHHHHHHHHH--HhhcCCCCcH-HHHHHHHHHHh------CcCHHHEEEcCCHHHHH
Confidence 5689999999863 4567788888876543 3457998888 59999999998 46788999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
..++.+++++||.|+++.|+|..+...++..|++++.++++. ++++|++++++.++++++++++++||||||.+++.+
T Consensus 102 ~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~ 179 (371)
T PRK05166 102 AVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTP--DLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTAD 179 (371)
T ss_pred HHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHH
Confidence 999999999999999999999999999999999999998753 456999999999888889999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC-CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG-SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
++++|+++|++ ++++|+||+|.++.+++..+..+..+. ...++|+++||||.|++||+|+||++++++ +++
T Consensus 180 ~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~-------~l~ 251 (371)
T PRK05166 180 QLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDP-------ELV 251 (371)
T ss_pred HHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCH-------HHH
Confidence 99999999865 889999999999986543333232232 235799999999999999999999887543 477
Q ss_pred HHHHhhhcccCCCccccccc
Q 022213 280 DSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~ 299 (301)
+.++.... ..+++.++|.+
T Consensus 252 ~~~~~~~~-~~~~~~~~q~~ 270 (371)
T PRK05166 252 GLLDRVRT-PFNVNGAAQAA 270 (371)
T ss_pred HHHHHhcc-CCCCCHHHHHH
Confidence 77766543 34577788754
No 76
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-36 Score=258.60 Aligned_cols=223 Identities=24% Similarity=0.410 Sum_probs=201.4
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
..+++.|.+.+- +|+.|+.+.+++++.++.+.+ .|+ .+..++-+++++|.+++++..+.++-|++++|...++
T Consensus 24 ~~DvlPmWVADM----Df~~pp~i~~Al~~rvdhGvf-GY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi 96 (388)
T COG1168 24 NEDVLPMWVADM----DFPTPPEIIEALRERVDHGVF-GYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGI 96 (388)
T ss_pred CCCcceeeeecc----cCCCCHHHHHHHHHHHhcCCC-CCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhH
Confidence 368999999984 689999999999999986643 455 5678899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC-CCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCC
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP-ERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~ 198 (301)
..+++.+.++||.|++.+|.|+++....+..|.++...|+.. ++.|.+|++.|++++.+ +++++++||||||||.+.+
T Consensus 97 ~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt 176 (388)
T COG1168 97 SLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWT 176 (388)
T ss_pred HHHHHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCcccc
Confidence 999999999999999999999999999999999999999864 45578899999998866 4689999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC--CCEEEEecCcccCCCCcceeEEEEeeCCC
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI--VPVITLGSISKRWLVPGWRFGWLVTNDPN 270 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~--~~vi~~~s~SK~~~~~G~rvG~~~~~~~~ 270 (301)
.+++++|.++|.+||++||+||+++++++.+....++..++.. ++.|.+.|.||+|+++|+++++++.+++.
T Consensus 177 ~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~ 250 (388)
T COG1168 177 KEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRE 250 (388)
T ss_pred HHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHH
Confidence 9999999999999999999999999999998766676666554 67999999999999999999999998753
No 77
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=100.00 E-value=6e-36 Score=275.76 Aligned_cols=244 Identities=21% Similarity=0.307 Sum_probs=186.7
Q ss_pred CCCeeeccCCCCCCCCCCCC-hHHHHHHHHHHHhcC----CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 41 PRPVVPLGYGDPTAFPCFRT-AVEAEDAIVDAVRSG----KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~-~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
.+++|+|+.|+|.. .+. ...+.+++.+.+... ....|++..|..+||++|++|+.+.+|+.+++++|++|+|
T Consensus 29 ~~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~G 105 (416)
T PRK09440 29 TPGAIMLGGGNPAH---IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNG 105 (416)
T ss_pred CCCceeccCCCCCc---cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccC
Confidence 36789999999863 233 345667776666542 2457999999999999999999988898899999999999
Q ss_pred HHHHHHHHHHHhcC-----CCCEEEE-cCCCCcchHHHHHhcC----ceEEEeecCCCC-CCCCCHHHHHhhcccCccEE
Q 022213 116 CKQAVEVILSVLAR-----PGANVLL-PRPGWPYYEGIAQRKQ----VEVRHFDLLPER-NWEVDLDAVEALADKNTAAM 184 (301)
Q Consensus 116 ~~~al~~~~~~l~~-----~gd~Vl~-~~p~~~~~~~~~~~~g----~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~v 184 (301)
+++++..+++++++ +||.|++ ++|+|+.|...+...+ .....+++..+. ++.+|++.++ +.++++++
T Consensus 106 a~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i 183 (416)
T PRK09440 106 SQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAI 183 (416)
T ss_pred hHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEE
Confidence 99999999999985 6899999 7999999977554333 222222332211 3678999987 35577899
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213 185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL 264 (301)
Q Consensus 185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~ 264 (301)
++++||||||.+++.+++++|+++|++++++||+||+|..+.... .+..... ...+++|+++||||. ++||+|+||+
T Consensus 184 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~-~~~~~vI~~~SfSK~-~~pGlRiG~~ 260 (416)
T PRK09440 184 CVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI-IFSEATP-LWNPNIILCMSLSKL-GLPGVRCGIV 260 (416)
T ss_pred EEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc-chhhcCc-cccCCeEEEeccccc-CCCcceEEEE
Confidence 999999999999999999999999999999999999997532110 1111111 114689999999996 9999999999
Q ss_pred EeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213 265 VTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE 300 (301)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 300 (301)
+++. ++++++..... ...+++.+.|.++
T Consensus 261 i~~~--------~l~~~~~~~~~~~~~~~s~~~q~~~ 289 (416)
T PRK09440 261 IADE--------EIIEALSNMNGIISLAPGRLGPAIA 289 (416)
T ss_pred eCCH--------HHHHHHHHHHHHhccCCCcHHHHHH
Confidence 9743 47777777654 3446788888764
No 78
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=100.00 E-value=2.3e-36 Score=273.05 Aligned_cols=234 Identities=21% Similarity=0.357 Sum_probs=189.7
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA 119 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a 119 (301)
++.++|+|+.|+| .+++|+.+.+++.+.+.. ...|++ .+..+||+++|+++ ++++++|++|+|++++
T Consensus 18 ~~~~~i~l~~~~~----~~~~p~~~~~a~~~~~~~--~~~y~~-~~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~ 84 (356)
T PRK08056 18 SPDQLLDFSANIN----PLGMPVSLKRAIIDNLDC--AERYPD-VEYRHLHQALARHH------QVPASWILAGNGETES 84 (356)
T ss_pred ChhhEEEeccccC----CCCCCHHHHHHHHHHHHh--cccCcC-ccHHHHHHHHHHHh------CcChhhEEECCCHHHH
Confidence 3578999999975 377888999998877653 336876 46899999999998 5688999999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+..+++++ .+|+ +++++|+|..|...++..|.+++.+++..++++.++ +.+.+.+.++++++++++||||||.+++.
T Consensus 85 l~~~~~~l-~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~ 161 (356)
T PRK08056 85 IFAVVSGL-KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPER 161 (356)
T ss_pred HHHHHHHh-CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCH
Confidence 99999987 6776 677899999999999999999999998766677777 44555566788999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
+++++|+++|++++++||+||+|.++.+.+....+. +...+++|+++||||.|+++|+|+||++++++ +++
T Consensus 162 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~-------~~~ 232 (356)
T PRK08056 162 QLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LADNPHLWVLRSLTKFYAIPGLRLGYLVNSDD-------AAV 232 (356)
T ss_pred HHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH--hccCCCEEEEEechhhccCcchhheeeecCCH-------HHH
Confidence 999999999999999999999999988754322221 22335789999999999999999999997542 366
Q ss_pred HHHHhhhcccCCCccccccc
Q 022213 280 DSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~ 299 (301)
+++++... ..+++.+.|.+
T Consensus 233 ~~l~~~~~-~~~~~~~~~~~ 251 (356)
T PRK08056 233 ARMRRQQM-PWSINAFAALA 251 (356)
T ss_pred HHHHHhCC-CCchhHHHHHH
Confidence 77766443 33456666654
No 79
>PRK06225 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.3e-35 Score=270.37 Aligned_cols=237 Identities=23% Similarity=0.381 Sum_probs=198.9
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
..++|+|+.|.+. +++++.+.+++.+.+.......|+++.|..+||+++++++ ++++++|++|+|+++++
T Consensus 27 ~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l------~~~~~~v~~~~g~t~al 96 (380)
T PRK06225 27 DKEMIWMGQNTNH----LGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDL------GLDDDEALITAGATESL 96 (380)
T ss_pred cCCeEEccCCCCC----CCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhc------CCCCCcEEEeCCHHHHH
Confidence 5689999999853 6778889999998887655667988889999999999998 46788999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC-CCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP-ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
..++++++.+||+|++++|+|..+...++..|.+++++++.. ++++.+|++.+++.++++++++++++|+||||.+++.
T Consensus 97 ~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~ 176 (380)
T PRK06225 97 YLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTE 176 (380)
T ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCH
Confidence 999999999999999999999998888899999999998743 3457899999999998888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
+++++|+++|+++|+++|+|++|.++..+.. +...+. ..+++++.||||.++++|+|+||+++++ +++
T Consensus 177 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~-~~~~i~~~s~SK~~g~~G~RiG~i~~~~--------~l~ 244 (380)
T PRK06225 177 EEIKEFAEIARDNDAFLLHDCTYRDFAREHT---LAAEYA-PEHTVTSYSFSKIFGMAGLRIGAVVATP--------DLI 244 (380)
T ss_pred HHHHHHHHHHHHCCcEEEEehhHHHHhccCC---chhhcC-CCCEEEEeechhhcCCccceeEEEecCH--------HHH
Confidence 9999999999999999999999988764321 122222 2578999999999999999999999843 477
Q ss_pred HHHHhhhcccCCCccccccc
Q 022213 280 DSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~ 299 (301)
++++.......+.+.++|.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~ 264 (380)
T PRK06225 245 EVVKSIVINDLGTNVIAQEA 264 (380)
T ss_pred HHHHHHHhcccCCCHHHHHH
Confidence 77776543334566676654
No 80
>PRK09105 putative aminotransferase; Provisional
Probab=100.00 E-value=7.9e-36 Score=270.49 Aligned_cols=229 Identities=19% Similarity=0.217 Sum_probs=186.7
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
.+++|+|+.|+| .+++|+.+.+++.+.+.. ...|++. +..+||+++++++ ++++++|++|+|+++++
T Consensus 42 ~~~~i~l~~~~~----~~~~~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~aia~~~------~v~~e~I~it~Gs~~ai 108 (370)
T PRK09105 42 AEGAVFLNANEC----PLGPSPAARDAAARSAAL--SGRYDLE-LEDDLRTLFAAQE------GLPADHVMAYAGSSEPL 108 (370)
T ss_pred CCCcEEecCCCC----CCCCCHHHHHHHHHHHHH--hcCCCCc-hHHHHHHHHHHHh------CcChhhEEEcCChHHHH
Confidence 356899999986 367788999998877653 2368775 4889999999987 57899999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
..++.+++++||+|++++|+|..|...++..|.+++.+++.. ++.+|++.+++. .++++++++++||||||.+++.+
T Consensus 109 ~~~~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~ 185 (370)
T PRK09105 109 NYAVLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRA--DGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRA 185 (370)
T ss_pred HHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHH
Confidence 999999999999999999999999999999999999998753 467899999876 45688999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
+++++++.+ ++++++|+||+|.++... .......+...++++++||||.||++|+|+||++++. ++++
T Consensus 186 ~l~~l~~~~-~~~~~lIvDEaY~~f~~~---~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~--------~~i~ 253 (370)
T PRK09105 186 DIEWLLANK-PAGSVLLVDEAYIHFSDA---PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARP--------DLLA 253 (370)
T ss_pred HHHHHHHhC-CCCcEEEEECchHHhccC---cchHHHHhhCCCEEEEecccHhhcCCccceeeeecCH--------HHHH
Confidence 999999976 458999999999876532 1112222335689999999999999999999999743 4777
Q ss_pred HHHhhhcccCCCccccccc
Q 022213 281 SIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 281 ~~~~~~~~~~~~~~~~q~~ 299 (301)
+++.. . ...++.+.|.+
T Consensus 254 ~l~~~-~-~~~~~~~~~~a 270 (370)
T PRK09105 254 KLARF-G-HNPLPVPAAAA 270 (370)
T ss_pred HHHhc-C-CCCcCHHHHHH
Confidence 77765 2 23355555543
No 81
>PRK08637 hypothetical protein; Provisional
Probab=100.00 E-value=5.6e-35 Score=266.87 Aligned_cols=250 Identities=20% Similarity=0.284 Sum_probs=184.2
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHh---cCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC---CCCEEEcCCH
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVR---SGKFNCYATNSGIPPARRAIADYLSRDLPYKLS---ADDVYVTLGC 116 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~---~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~---~~~i~~t~g~ 116 (301)
+.++.++|.-.. +..+ .+.+++.+.++ ......|+++.|.++||+++++++.+.++ ... .++|++|+|+
T Consensus 4 ~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~ 78 (388)
T PRK08637 4 TKYNATIGMATE-KGGP---MYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNAL 78 (388)
T ss_pred cceecceeeEec-CCCc---chHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccch
Confidence 456777774321 1122 33344444333 23466899999999999999999977543 232 3689999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcCCCC
Q 022213 117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIINPGN 191 (301)
Q Consensus 117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~n 191 (301)
++++..++.+++++||.|++++|+|+.|...+. ..|.+++.+++.. +++++|++.+++.++ +.++++++++|||
T Consensus 79 ~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~-~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~N 157 (388)
T PRK08637 79 THGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFD-EDGGFDTDALKEALQAAYNKGKVIVILNFPNN 157 (388)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccC-CCCcCCHHHHHHHHHhhccCCCEEEEEeCCCC
Confidence 999999999999999999999999999988754 6899999998732 234689999998876 3445577889999
Q ss_pred CcccCCCHHHHHHHHHHHHh-----CCCeEEEccCCcccccCCCCCCCc-ccc-CCCCCE--EEEecCcccCCCCcceeE
Q 022213 192 PCGNVFTYHHLQEIAEMARK-----LRVMVVADEVYGHLTFGSIPYTPM-GLF-GSIVPV--ITLGSISKRWLVPGWRFG 262 (301)
Q Consensus 192 ptG~~~~~~~l~~i~~~~~~-----~~~~ii~D~~y~~~~~~~~~~~~~-~~~-~~~~~v--i~~~s~SK~~~~~G~rvG 262 (301)
|||.+++.+++++|+++|++ |+++||+||+|.++.|++....++ ..+ +..+++ ++++|+||.|++||+|+|
T Consensus 158 PTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG 237 (388)
T PRK08637 158 PTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVG 237 (388)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceE
Confidence 99999999999999999875 899999999999999876544332 222 233464 556799999999999999
Q ss_pred EEEeeCCCCcccchhHHHHHHhh----hc-ccCCCcccccccC
Q 022213 263 WLVTNDPNGIFQKSGIIDSIKDC----LS-IYSDIPTFIQVCE 300 (301)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~q~~~ 300 (301)
|++++..+. .++++++++... .. ...++|.+.|.++
T Consensus 238 ~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~ 278 (388)
T PRK08637 238 FITFGTKAG--SSQTVKEALEKKVKGLIRSNISNGPHPSQSAV 278 (388)
T ss_pred EEEEccccC--CcHHHHHHHHHHHHHHhhcccCCCCcHHHHHH
Confidence 999764100 013466666432 11 2346788888764
No 82
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-35 Score=263.21 Aligned_cols=229 Identities=25% Similarity=0.427 Sum_probs=195.2
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE 121 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~ 121 (301)
+++++|+.++. | +++|+.+.+++.+.+. .++.|+++ ...++++++++++.. .++++|++++|+++.|.
T Consensus 22 ~~~i~LssNen---P-~gp~~~~~~~~~~~~~--~~~rYPd~-~~~~l~~a~a~~~~~-----~~~~~V~~gnGsde~i~ 89 (356)
T COG0079 22 PGIIKLSSNEN---P-YGPPPKVIEAIRAALD--KLNRYPDP-DYRELRAALAEYYGV-----VDPENVLVGNGSDELIE 89 (356)
T ss_pred ccceeecCCCC---C-CCCCHHHHHHHHHHHH--hhccCCCC-cHHHHHHHHHHHhCC-----CCcceEEEcCChHHHHH
Confidence 46999999964 3 6778888888888776 55689886 689999999999932 67899999999999999
Q ss_pred HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213 122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH 201 (301)
Q Consensus 122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~ 201 (301)
.++++++.+||+|+++.|+|..|...++..|.+++.++... |..|++.+...++++++++++||||||||..++.++
T Consensus 90 ~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~ 166 (356)
T COG0079 90 LLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREE 166 (356)
T ss_pred HHHHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999998754 789999999999888999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHH
Q 022213 202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDS 281 (301)
Q Consensus 202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~ 281 (301)
++++++.+.+ +.++|+||+|.+|.. ...+.......|+++++||||.||++|+|+||++++ +++++.
T Consensus 167 l~~l~~~~~~-~~~vVvDEAY~eF~~----~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~--------~~~i~~ 233 (356)
T COG0079 167 LRALLEALPE-GGLVVIDEAYIEFSP----ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIAN--------PELIAA 233 (356)
T ss_pred HHHHHHhCCC-CcEEEEeCchhhcCC----chhhhhccCCCCEEEEEecHHhhhcchhceeeccCC--------HHHHHH
Confidence 9999999988 999999999999774 222222224457999999999999999999998763 469999
Q ss_pred HHhhhcccCCCccccccc
Q 022213 282 IKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 282 ~~~~~~~~~~~~~~~q~~ 299 (301)
+++...-+ +.|.++|.+
T Consensus 234 l~~vr~p~-~v~~~a~~a 250 (356)
T COG0079 234 LNKVRPPF-NVSSPALAA 250 (356)
T ss_pred HHHhcCCC-CCCHHHHHH
Confidence 99887633 455565543
No 83
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=100.00 E-value=2e-35 Score=267.27 Aligned_cols=233 Identities=15% Similarity=0.222 Sum_probs=183.7
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA 119 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a 119 (301)
...++|+|+.|.+. +++|+.+.+++.+.+.. ...|++. +..+||+++|+++ ++++++|++|+|++++
T Consensus 20 ~~~~~i~l~~~~n~----~~~~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~aia~~~------~v~~~~I~it~G~~~~ 86 (360)
T PRK07392 20 PPDAILDFSASINP----LGPPESVIAAIQSALSA--LRHYPDP-DYRELRLALAQHH------QLPPEWILPGNGAAEL 86 (360)
T ss_pred CcccEEEeCCcCCC----CCCCHHHHHHHHHHHHH--hhcCCCc-CHHHHHHHHHHHh------CcChhhEEECCCHHHH
Confidence 34578999999642 66778888888877763 5579875 4689999999998 5788999999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCC---CCCHHHHHhhcccCccEEEEcCCCCCcccC
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW---EVDLDAVEALADKNTAAMVIINPGNPCGNV 196 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~v~l~~p~nptG~~ 196 (301)
+..+++++. +||.|++++|+|..|...++..|++++.++++.+.++ ..+++.+++.. .+++++++++||||||.+
T Consensus 87 i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~ 164 (360)
T PRK07392 87 LTWAGRELA-QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKL 164 (360)
T ss_pred HHHHHHHhC-CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCC
Confidence 999999875 6899999999999999999999999999998655543 35666666543 367889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213 197 FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS 276 (301)
Q Consensus 197 ~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~ 276 (301)
++++++.++ ++++++ +|+||+|.++.+++.....+..++...++|+++||||.|++||+|+||+++++
T Consensus 165 ~~~~~l~~l---~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~-------- 232 (360)
T PRK07392 165 WSREAILPL---LEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHP-------- 232 (360)
T ss_pred cCHHHHHHH---HHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCH--------
Confidence 996665554 557775 66699999998765322223334445689999999999999999999999843
Q ss_pred hHHHHHHhhhcccCCCcccccccC
Q 022213 277 GIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
+++++++.... ..+++.++|.++
T Consensus 233 ~~~~~~~~~~~-~~~~s~~~q~~~ 255 (360)
T PRK07392 233 DRLQRWQQWRD-PWPVNGLAAAAA 255 (360)
T ss_pred HHHHHHHhhCC-CCCCCHHHHHHH
Confidence 47777766543 346788888764
No 84
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=2.6e-35 Score=267.22 Aligned_cols=230 Identities=18% Similarity=0.242 Sum_probs=190.1
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE 121 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~ 121 (301)
+.+++|+.|+| .+++++.+.+++.+... ....|++. +..+||+++|+++ ++++++|++|+|+++++.
T Consensus 32 ~~~~~l~~~~~----~~~~~~~~~~a~~~~~~--~~~~Y~~~-~~~~Lr~~ia~~~------~~~~~~I~it~G~~~~l~ 98 (369)
T PRK08153 32 PFRARIGANES----GFGPSPSVIAAMREAAA--EIWKYGDP-ENHDLRHALAAHH------GVAPENIMVGEGIDGLLG 98 (369)
T ss_pred cceeEecCCCC----CCCCCHHHHHHHHHHHH--HhhcCCCC-ccHHHHHHHHHHh------CCCHHHEEEcCCHHHHHH
Confidence 34579999996 37888899999887764 23468876 5799999999998 468899999999999999
Q ss_pred HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc-ccCccEEEEcCCCCCcccCCCHH
Q 022213 122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA-DKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
.++++++++||.|+++.|+|+.+...+...|.+++.++++.+ ..|++.+++.+ +.+++++++++||||||.+++.+
T Consensus 99 ~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~---~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~ 175 (369)
T PRK08153 99 LIVRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD---REDLDALLDAARRENAPLVYLANPDNPMGSWHPAA 175 (369)
T ss_pred HHHHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC---CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHH
Confidence 999999999999999999999998888889999999987432 47889887765 45788999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
++++|++.|+ ++++||+||+|.++.+++. ..++.. ...++|+++||||.|++||+|+||++++. ++++
T Consensus 176 ~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~-~~~~~~--~~~~~i~~~SfSK~~g~~GlRiG~~v~~~--------~~~~ 243 (369)
T PRK08153 176 DIVAFIEALP-ETTLLVLDEAYCETAPAGA-APPIDT--DDPNVIRMRTFSKAYGLAGARVGYAIGAP--------GTIK 243 (369)
T ss_pred HHHHHHHhCC-CCcEEEEeCchhhhcCccc-chhhhh--cCCCEEEEecchHhccCcchheeeeecCH--------HHHH
Confidence 9999999887 4899999999999887542 233322 23579999999999999999999999843 4777
Q ss_pred HHHhhhcccCCCcccccccC
Q 022213 281 SIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 281 ~~~~~~~~~~~~~~~~q~~~ 300 (301)
.+++.... .+.+.+.|.++
T Consensus 244 ~l~~~~~~-~~~s~~~q~~~ 262 (369)
T PRK08153 244 AFDKVRNH-FGMNRIAQAAA 262 (369)
T ss_pred HHHHhhcC-CCCCHHHHHHH
Confidence 77766543 45778888753
No 85
>PRK03321 putative aminotransferase; Provisional
Probab=100.00 E-value=8e-36 Score=269.16 Aligned_cols=233 Identities=23% Similarity=0.318 Sum_probs=195.1
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE 121 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~ 121 (301)
..+|+|+.|.|. +++++.+.+++.+.+. ....|++ .|..++|+++|+++ ++++++|++|+|+++++.
T Consensus 22 ~~~i~l~~~~~~----~~~~~~~~~a~~~~~~--~~~~y~~-~g~~~lr~~ia~~~------~~~~~~I~~~~G~~~~l~ 88 (352)
T PRK03321 22 PGAIKLSSNETP----FGPLPSVRAAIARAAA--GVNRYPD-MGAVELRAALAEHL------GVPPEHVAVGCGSVALCQ 88 (352)
T ss_pred ccceeccCCCCC----CCCCHHHHHHHHHHHH--hcCcCCC-CcHHHHHHHHHHHh------CcCHHHEEECCCHHHHHH
Confidence 468999999864 6667789999887765 3446865 69999999999999 467889999999999999
Q ss_pred HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213 122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH 201 (301)
Q Consensus 122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~ 201 (301)
.++..++++||+|+++.|+|..|...++..|.+++.++++++ +.++++.+++.++++++++++++|+||||.+++.++
T Consensus 89 ~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~ 166 (352)
T PRK03321 89 QLVQATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPD--HTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAE 166 (352)
T ss_pred HHHHHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCC--CCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHH
Confidence 999999999999999999999988888999999999987543 568999999999888999999999999999999888
Q ss_pred HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHH
Q 022213 202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDS 281 (301)
Q Consensus 202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~ 281 (301)
+.++++.| ++++++|+||+|.++.+++....++..+...+++++++||||.|++||+|+||++++. +++++
T Consensus 167 l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~--------~~~~~ 237 (352)
T PRK03321 167 LARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP--------EVIAA 237 (352)
T ss_pred HHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCH--------HHHHH
Confidence 88888865 4799999999999998865443444444455689999999999999999999999742 47888
Q ss_pred HHhhhcccCCCccccccc
Q 022213 282 IKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 282 ~~~~~~~~~~~~~~~q~~ 299 (301)
+++... ..+.+.++|.+
T Consensus 238 ~~~~~~-~~~~s~~~q~~ 254 (352)
T PRK03321 238 LRKVAV-PFSVNSLAQAA 254 (352)
T ss_pred HHHhcC-CCCCCHHHHHH
Confidence 876643 44677888764
No 86
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=1.9e-35 Score=268.95 Aligned_cols=227 Identities=19% Similarity=0.287 Sum_probs=186.1
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
+.++|+|+.|++. +++++.+.+++.+.. ....|++ .+..+||+++++++ ++++++|++|+|+++++
T Consensus 51 ~~~~i~l~~n~~p----~~~~~~v~~a~~~~~---~~~~Yp~-~~~~~lr~~ia~~~------~~~~~~I~~t~Ga~~~i 116 (380)
T PLN03026 51 PEDIVKLDANENP----YGPPPEVLEALGNMK---FPYVYPD-PESRRLRAALAEDS------GLESENILVGCGADELI 116 (380)
T ss_pred ccceEEccCCCCC----CCCCHHHHHHHHhhH---hhccCCC-CCHHHHHHHHHHHh------CcChhhEEEcCCHHHHH
Confidence 5689999999853 566677888775421 2335776 46899999999998 46889999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc-ccCccEEEEcCCCCCcccCCCH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA-DKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~ 199 (301)
..++++++++||+|++++|+|..|...++..|.+++.++.+ .++.+|++.+++.+ +++++++++++||||||.+++.
T Consensus 117 ~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~ 194 (380)
T PLN03026 117 DLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT--PDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISD 194 (380)
T ss_pred HHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCH
Confidence 99999999999999999999999988889999999999874 35779999999988 6789999999999999999998
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
+++++|++.+ +++|+||+|.++.+.+. . .......+++|+++||||.|+++|+|+||++++. +++
T Consensus 195 ~~l~~l~~~~----~~vi~DeaY~~~~~~~~-~--~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~--------~~i 259 (380)
T PLN03026 195 DDLLKILELP----ILVVLDEAYIEFSTQES-R--MKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPL--------SII 259 (380)
T ss_pred HHHHHHHhcC----CEEEEECcchhhcCCcc-h--HHHHHhCCCEEEEecchHhhcCccccceeeecCH--------HHH
Confidence 8888887743 89999999999876432 1 2223345689999999999999999999999743 578
Q ss_pred HHHHhhhcccCCCccccccc
Q 022213 280 DSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~ 299 (301)
+++++... ..+.+.++|.+
T Consensus 260 ~~l~~~~~-~~~~~~~~q~a 278 (380)
T PLN03026 260 EYLWRAKQ-PYNVSVAAEVA 278 (380)
T ss_pred HHHHHhcC-CCCCCHHHHHH
Confidence 88877654 24567777765
No 87
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=1.9e-35 Score=267.10 Aligned_cols=229 Identities=23% Similarity=0.358 Sum_probs=190.7
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQA 119 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~a 119 (301)
+.++|+|+.|+| .+++|+.+.+++.+.+....+..|++ .|..+||+++++++. ... ++|++|+|++++
T Consensus 25 ~~~~i~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~------~~~~~~I~~t~G~~~~ 93 (356)
T PRK04870 25 ATGMVKLDAMEN----PYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMG------VPAGADVLLGNGSDEL 93 (356)
T ss_pred CCCceeCcCCCC----CCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhC------cCCCCcEEEcCCHHHH
Confidence 468999999986 37888999999998886555667987 578999999999983 333 589999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-cCccEEEEcCCCCCcccCCC
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-KNTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~ 198 (301)
+..++++++++||+|++++|+|..|...++..|++++.++++ +++.+|++.+++.++ .+++++++++||||||.+++
T Consensus 94 i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~ 171 (356)
T PRK04870 94 IQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFD 171 (356)
T ss_pred HHHHHHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999885 346799999999886 47899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI 278 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~ 278 (301)
.+++++|+++| +.++|+||+|.++.+.. .. ..+...+++|+++|||| +++||+|+||++++. ++
T Consensus 172 ~~~~~~i~~~~---~~~ii~De~y~~~~~~~--~~--~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~--------~~ 235 (356)
T PRK04870 172 DADVERIIEAA---PGLVVVDEAYQPFAGDS--WL--PRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHP--------AW 235 (356)
T ss_pred HHHHHHHHHHC---CCEEEEECCchhhcCcc--hH--HHHhhCCCEEEEecchh-hhhHHHhhhhhhCCH--------HH
Confidence 99999999988 67899999999876432 11 11233457999999999 799999999999743 47
Q ss_pred HHHHHhhhcccCCCccccccc
Q 022213 279 IDSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~q~~ 299 (301)
+++++.... ..+.+.++|.+
T Consensus 236 i~~~~~~~~-~~~~~~~~q~~ 255 (356)
T PRK04870 236 IAELDKVRP-PYNVNVLTQAT 255 (356)
T ss_pred HHHHHHccC-CCcCCHHHHHH
Confidence 787776553 33566777754
No 88
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=7.3e-35 Score=262.72 Aligned_cols=231 Identities=22% Similarity=0.353 Sum_probs=188.7
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
.+..++|+.|+| .+++|+.+.+++.+.+.......|++. +..+||+++|+++ ++++++|++|+|+++++
T Consensus 21 ~~~~~~l~~~~~----~~~~p~~~~~a~~~~~~~~~~~~y~~~-~~~~lr~~ia~~~------~~~~~~i~it~G~~~~l 89 (351)
T PRK14807 21 IPYKYKMDANET----PFELPEEVIKNIQEIVKSSQVNIYPDP-TAEKLREELARYC------SVVPTNIFVGNGSDEII 89 (351)
T ss_pred CCceeEccCCCC----CCCCCHHHHHHHHHHhhcCcccCCCCc-cHHHHHHHHHHHh------CCCcccEEEecCHHHHH
Confidence 346799999996 378889999999888765556678764 5689999999998 56889999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~ 199 (301)
..++++++++||+|++++|+|..+...++..|.+++.++++ .++.+|++.+++.++. +++++++++|+||||.+++.
T Consensus 90 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~ 167 (351)
T PRK14807 90 HLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK--EDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIER 167 (351)
T ss_pred HHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCH
Confidence 99999999999999999999999988889999999999875 3467999999998865 78999999999999999997
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
++++++++ +++.++|+||+|.++. + ....+ ......++|+++||||.|++||+|+||++++. +++
T Consensus 168 ~~l~~l~~---~~~~~~ivDe~y~~~~-~-~~~~~--~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~--------~~~ 232 (351)
T PRK14807 168 EDIIKIIE---KSRGIVVVDEAYFEFY-G-NTIVD--VINEFENLIVLRTLSKAFGLAGLRVGYAVANE--------NIL 232 (351)
T ss_pred HHHHHHHH---hCCCEEEEeCcchhhc-c-cchHH--HhhhCCCEEEEecchHhcccchhceeeeecCH--------HHH
Confidence 77776655 5677899999998863 2 22222 12334689999999999999999999999742 477
Q ss_pred HHHHhhhcccCCCcccccccC
Q 022213 280 DSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~~ 300 (301)
++++.... ..+.+.++|.++
T Consensus 233 ~~~~~~~~-~~~~~~~~q~~~ 252 (351)
T PRK14807 233 KYLNLVKS-PYNINSLSQVIA 252 (351)
T ss_pred HHHHHccC-CCCcCHHHHHHH
Confidence 88876654 245677787653
No 89
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=3.2e-35 Score=265.35 Aligned_cols=228 Identities=17% Similarity=0.302 Sum_probs=185.2
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
..++|+|+.|+|. +++++.+.+++.+.+.. ....|++. |..+||+++|+++ ++++++|++|+|+++++
T Consensus 23 ~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~~-~~~~y~~~-~~~~lr~aia~~~------~~~~~~I~it~G~~~al 90 (353)
T PRK05387 23 LAKLIKLNTNENP----YPPSPKVLEAIRAALGD-DLRLYPDP-NADALRQAIAAYY------GLDPEQVFVGNGSDEVL 90 (353)
T ss_pred ccceeeccCCCCC----CCCCHHHHHHHHHHhhh-hhhcCCCC-cHHHHHHHHHHHh------CCCHHHEEEcCCHHHHH
Confidence 4578999999963 66678888998877653 24578765 6699999999998 47889999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
..++++++++||.|++++|+|+.|...++..|++++.++++ +++.+|++.+++ .++.+++++||||||.+++.+
T Consensus 91 ~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~ 164 (353)
T PRK05387 91 AHAFLAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD--DDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLA 164 (353)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHH
Confidence 99999999999999999999999998899999999999874 356799998874 457889999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
++++|++.++ ++++|+||+|.++. +....++ .....++|+++||||.|+++|+|+||++++. ++++
T Consensus 165 ~~~~l~~~~~--~~~livDe~y~~~~--~~~~~~~--~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~--------~~~~ 230 (353)
T PRK05387 165 EIERILAANP--DSVVVIDEAYVDFG--GESAIPL--IDRYPNLLVVQTFSKSRSLAGLRVGFAIGHP--------ELIE 230 (353)
T ss_pred HHHHHHHhCC--CcEEEEeCcccccC--CcchHHH--HhhCCCEEEEEehhHhhcchhhhceeeecCH--------HHHH
Confidence 9999988653 89999999998753 2222222 2334679999999999999999999999742 4778
Q ss_pred HHHhhhcc--cCCCcccccccC
Q 022213 281 SIKDCLSI--YSDIPTFIQVCE 300 (301)
Q Consensus 281 ~~~~~~~~--~~~~~~~~q~~~ 300 (301)
+++..... ..+.+.+.|.++
T Consensus 231 ~l~~~~~~~~~~~~~~~~q~~~ 252 (353)
T PRK05387 231 ALNRVKNSFNSYPLDRLAQAGA 252 (353)
T ss_pred HHHHhhccCCCCCcCHHHHHHH
Confidence 87776542 235677777653
No 90
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=100.00 E-value=6.8e-35 Score=264.56 Aligned_cols=234 Identities=20% Similarity=0.287 Sum_probs=193.7
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA 119 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a 119 (301)
++.++|+|+.|++. +++++.+.+++.+.+. ....|++.. ..+||+++|+++ ++++++|++|+|++++
T Consensus 30 ~~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~--~~~~y~~~~-~~~lr~~ia~~~------~~~~~~i~~t~G~~~~ 96 (367)
T PRK02731 30 GIADIIKLASNENP----LGPSPKAIEAIRAAAD--ELHRYPDGS-GFELKAALAEKF------GVDPERIILGNGSDEI 96 (367)
T ss_pred CCCceEEecCCCCC----CCCCHHHHHHHHHHHH--hhcCCCCCc-HHHHHHHHHHHh------CcCHHHEEEcCCHHHH
Confidence 36789999999853 4567788888888765 345788754 479999999998 4678899999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+..++++++++||.|++++|+|..+...++..|.+++.++. +++.+|++.+++.++++++++++++||||||.+++.
T Consensus 97 l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 173 (367)
T PRK02731 97 LELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPA 173 (367)
T ss_pred HHHHHHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc---cCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCH
Confidence 99999999999999999999999988888889999998876 456799999999998888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
++++++++.|+ +++++|+|++|..+.+.+....++..++...++|+++||||.|+++|+|+||++++. +++
T Consensus 174 ~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~--------~~~ 244 (367)
T PRK02731 174 EEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPP--------EII 244 (367)
T ss_pred HHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCH--------HHH
Confidence 99999999875 699999999999988765444444434445689999999999999999999999743 477
Q ss_pred HHHHhhhcccCCCccccccc
Q 022213 280 DSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~ 299 (301)
++++..... .+.+.++|.+
T Consensus 245 ~~l~~~~~~-~~~~~~~~~~ 263 (367)
T PRK02731 245 DALNRVRQP-FNVNSLALAA 263 (367)
T ss_pred HHHHHccCC-CCCCHHHHHH
Confidence 777766542 2456677754
No 91
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=1.6e-34 Score=258.99 Aligned_cols=227 Identities=22% Similarity=0.346 Sum_probs=183.8
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
+.++|+|+.|.+. +++++.+.+++.+.+.......|++ .|..+||+++++++ ++++++|++|+|+++++
T Consensus 17 ~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~-~g~~~lr~~ia~~~------~~~~~~I~~t~G~~~~l 85 (337)
T PRK03967 17 GNYRIWLDKNENP----FDLPEELKEEIFEELKRVPFNRYPH-ITSDPLREAIAEFY------GLDAENIAVGNGSDELI 85 (337)
T ss_pred CCceEEecCCCCC----CCCCHHHHHHHHHHhhcCccccCCC-CCHHHHHHHHHHHh------CcCcceEEEcCCHHHHH
Confidence 3468999999863 6777888899888876444567875 69999999999999 47889999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
..+++.+ +||+|+++.|+|..|...++..|.+++.+++.. ++.+|++.+++.. ++++++++++||||||.+++.+
T Consensus 86 ~~~~~~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~ 160 (337)
T PRK03967 86 SYLVKLF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKE--DFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEE 160 (337)
T ss_pred HHHHHHh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCC--CCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHH
Confidence 9988876 799999999999999888899999999998753 4679999998865 4678888999999999999976
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
++.+++ ++++++|+||+|.++... ...+ ......++|+++||||.|++||+|+||+++++ ++++
T Consensus 161 ~l~~i~----~~~~~ii~De~y~~~~~~--~~~~--~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~--------~~i~ 224 (337)
T PRK03967 161 EILKVL----ETGKPVVLDEAYAEFSGK--SLIG--LIDEYPNLILLRTFSKAFGLAGIRAGYAIANE--------EIID 224 (337)
T ss_pred HHHHHH----hcCCEEEEECchhhhccc--chHH--HHhhCCCEEEEecchHhhcchhhhheeeecCH--------HHHH
Confidence 666654 369999999999987532 2211 12234579999999999999999999999743 4778
Q ss_pred HHHhhhcccCCCcccccccC
Q 022213 281 SIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 281 ~~~~~~~~~~~~~~~~q~~~ 300 (301)
++++..+. .+.+.++|.++
T Consensus 225 ~~~~~~~~-~~~~~~~q~~~ 243 (337)
T PRK03967 225 ALYRIKPP-FSLNILTMKIV 243 (337)
T ss_pred HHHhhcCC-CCCCHHHHHHH
Confidence 88776553 35677787653
No 92
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=2.7e-34 Score=257.24 Aligned_cols=224 Identities=20% Similarity=0.299 Sum_probs=179.3
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA 119 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a 119 (301)
.+.++|+|+.|+| .+++|+.+.+++.+.+..+.+..|++. |..+||+++++++.+.+ +++++|++|+|++++
T Consensus 17 ~~~~~i~l~~~~~----~~~~p~~~~~~~~~~~~~~~~~~Y~~~-~~~~Lr~aia~~~~~~~---~~~~~i~it~Ga~~~ 88 (335)
T PRK14808 17 EKRDRTYLALNEN----PFPFPEDLVDEVFRRLNSDTLRIYYDS-PDEELIEKILSYLDTDF---LSKNNVSVGNGADEI 88 (335)
T ss_pred CCCceeEecCCCC----CCCCCHHHHHHHHHHhhhhhhhcCCCC-ChHHHHHHHHHHhCCCC---CCcceEEEcCCHHHH
Confidence 4678999999996 478889999998887765445457764 89999999999996632 689999999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+..+++++ |.|++++|+|..|...++..|++++.++++.+ +.++... + .+++++++++||||||.+++.
T Consensus 89 i~~~~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~ 157 (335)
T PRK14808 89 IYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD--LRIPEVN----V-GEGDVVFIPNPNNPTGHVFER 157 (335)
T ss_pred HHHHHHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecCCCc--CCCChhH----c-cCCCEEEEeCCCCCCCCCcCH
Confidence 99999988 78999999999999999999999999987542 3344322 2 246889999999999999998
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
+++++|+ +++++||+||+|.++. +....+ ......++|+++||||.|+++|+|+||++++. +++
T Consensus 158 ~~l~~l~----~~~~~ii~DE~Y~~f~--~~~~~~--~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~--------~~~ 221 (335)
T PRK14808 158 EEIERIL----KTGAFVALDEAYYEFH--GESYVD--LLKKYENLAVIRTFSKAFSLAAQRIGYVVSSE--------KFI 221 (335)
T ss_pred HHHHHHH----hcCCEEEEECchhhhc--CCchHH--HHHhCCCEEEEEechhhccCcccceEEEEeCH--------HHH
Confidence 8888886 4799999999999974 222222 12233589999999999999999999999853 488
Q ss_pred HHHHhhhcccCCCccccccc
Q 022213 280 DSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~ 299 (301)
+++++... ..+.+.++|.+
T Consensus 222 ~~l~~~~~-~~~~~~~~q~a 240 (335)
T PRK14808 222 DAYNRVRL-PFNVSYVSQMF 240 (335)
T ss_pred HHHHHhcC-CCCCCHHHHHH
Confidence 88877653 34567777765
No 93
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=100.00 E-value=8.9e-34 Score=255.25 Aligned_cols=231 Identities=23% Similarity=0.424 Sum_probs=190.0
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
+.++|+|+.|++. +++|+.+.+++.++.. ....|++..+ .++|+++++++ ++++++|++|+|+++++
T Consensus 18 ~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~--~~~~y~~~~~-~~lr~~ia~~~------~~~~~~i~~~~G~~~~l 84 (346)
T TIGR01141 18 GKEVIKLNSNENP----FGPPPKAKEALRAEAD--KLHRYPDPDP-AELKQALADYY------GVDPEQILLGNGSDEII 84 (346)
T ss_pred CCceEEccCCCCC----CCCCHHHHHHHHHhHH--HhhcCCCCCH-HHHHHHHHHHh------CcChHHEEEcCCHHHHH
Confidence 4689999999963 6778889999988764 2347887665 89999999998 36788999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
..++.+++++||+|++++|+|..+...++..|.+++.+++..+ +.+|++.+++.+.++++++++++|+||||.+++.+
T Consensus 85 ~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~ 162 (346)
T TIGR01141 85 ELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED--GQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRS 162 (346)
T ss_pred HHHHHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC--CCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHH
Confidence 9999999999999999999999888888899999999987543 56899999998877899999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
+++++++.|+ +++++|+|++|..+.+.+. +. .......++|+++|+||.|+++|+|+||++++. ++++
T Consensus 163 ~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~-~~--~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~--------~~~~ 230 (346)
T TIGR01141 163 DIEAVLERTP-EDALVVVDEAYGEFSGEPS-TL--PLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA--------EIID 230 (346)
T ss_pred HHHHHHHhCC-CCcEEEEECchhhhcCCcc-HH--HHHhhCCCEEEEehhhHhhhchhhhceeeecCH--------HHHH
Confidence 9999999887 7999999999997765321 11 112223468999999999999999999999743 4777
Q ss_pred HHHhhhcccCCCccccccc
Q 022213 281 SIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 281 ~~~~~~~~~~~~~~~~q~~ 299 (301)
+++.... ..+.+.++|.+
T Consensus 231 ~~~~~~~-~~~~~~~~~~~ 248 (346)
T TIGR01141 231 ALNKVRA-PFNLSRLAQAA 248 (346)
T ss_pred HHHhccC-CCCCCHHHHHH
Confidence 7776543 23456677654
No 94
>PRK08354 putative aminotransferase; Provisional
Probab=100.00 E-value=5.9e-33 Score=246.24 Aligned_cols=190 Identities=16% Similarity=0.281 Sum_probs=160.0
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
..++|+|+.|++ | ++ |+.+.+++.++++. ...|+. ...||+++++++. ++|++|+|+++++
T Consensus 7 ~~~~i~l~~~~n---p-~~-p~~~~~a~~~~~~~--~~~yp~---~~~l~~~ia~~~~---------~~I~vt~G~~~al 67 (311)
T PRK08354 7 EEGLIDFSASVN---P-YP-PEWLDEMFERAKEI--SGRYTY---YEWLEEEFSKLFG---------EPIVITAGITEAL 67 (311)
T ss_pred ccceeEecCCCC---C-CC-CHHHHHHHHHHHHH--hhcCCC---hHHHHHHHHHHHC---------CCEEECCCHHHHH
Confidence 567999999953 2 33 46788888877653 346754 3679999999872 4799999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
..++..+ .+||+|++++|+|..|...++..|.+++.++ +|++.+++.++ +++.+++++||||||.+++.+
T Consensus 68 ~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~ 137 (311)
T PRK08354 68 YLIGILA-LRDRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFK 137 (311)
T ss_pred HHHHHhh-CCCCeEEEeCCCcHHHHHHHHHcCCEEeecC--------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHH
Confidence 9888655 4899999999999999999999999987642 57888988776 567899999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
++++|+++|+++|+++|+||+|.++.+++... ...++|+++||||+|++||+|+||+++
T Consensus 138 ~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~-------~~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 138 ELKPLLDAVEDRNALLILDEAFIDFVKKPESP-------EGENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred HHHHHHHHhhhcCcEEEEeCcchhcccccccc-------CCCcEEEEeccHhhcCCccceeeeeee
Confidence 99999999999999999999999998864211 145799999999999999999999997
No 95
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=100.00 E-value=5.9e-33 Score=248.18 Aligned_cols=211 Identities=19% Similarity=0.206 Sum_probs=162.5
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE 121 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~ 121 (301)
.++|+|+.|.. |..+.++.+.+ ..+. .|+.. ..+||+++++++ ..++|++|+|++++|.
T Consensus 20 ~~~i~l~~ne~---p~~~~~~~~~~---~~~~-----~yp~~--~~~Lr~~ia~~~--------~~~~I~it~Gs~~al~ 78 (330)
T PRK05664 20 ADWLDLSTGIA---PWPWPVPAIPA---DAWA-----RLPET--DDGLEAAARAYY--------GAPQLLPVAGSQAAIQ 78 (330)
T ss_pred HHheeecCCcC---CCCCCCcccCH---HHHH-----hCCCC--hHHHHHHHHHHh--------CCCCEEECcCHHHHHH
Confidence 46899999942 21112122211 2222 47653 389999999998 3479999999999999
Q ss_pred HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213 122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH 201 (301)
Q Consensus 122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~ 201 (301)
.++. +.+||+|++++|+|+.|...++..|.+++.+++ +.++..++ +++++++++||||||.+++.++
T Consensus 79 ~~~~--~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~----------~~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~ 145 (330)
T PRK05664 79 ALPR--LRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDE----------AEVEAALD-SLDVLVVVNPNNPTGRRFDPAR 145 (330)
T ss_pred HHHH--ccCCCEEEEcCCChHHHHHHHHHcCCeEEEech----------hhHhhhhc-CCCEEEEeCCcCCCCCccCHHH
Confidence 8863 579999999999999999999999999998865 23444443 5778899999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHH
Q 022213 202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDS 281 (301)
Q Consensus 202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~ 281 (301)
+++|+++|++++++||+||+|.++.. ..++..+...+++|+++||||.|++||+|+||++++. +++++
T Consensus 146 l~~l~~~~~~~~~~iI~DE~y~~~~~----~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~--------~l~~~ 213 (330)
T PRK05664 146 LLAWHARLAARGGWLVVDEAFMDNTP----QHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEP--------ALLRA 213 (330)
T ss_pred HHHHHHHHHhcCCEEEEECCcccCCC----cccccccccCCCEEEEeeccccccCCCcceEEEEeCH--------HHHHH
Confidence 99999999999999999999987541 1344445555689999999999999999999999843 47888
Q ss_pred HHhhhcccCCCccccccc
Q 022213 282 IKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 282 ~~~~~~~~~~~~~~~q~~ 299 (301)
+++... ..+.+.+.|.+
T Consensus 214 ~~~~~~-~~~~~~~~~~~ 230 (330)
T PRK05664 214 LAELLG-PWTVSGPTRWL 230 (330)
T ss_pred HHHhcC-CCCCCHHHHHH
Confidence 877654 22345566554
No 96
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=1.3e-33 Score=254.44 Aligned_cols=223 Identities=22% Similarity=0.382 Sum_probs=177.9
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE 121 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~ 121 (301)
...|+|+.+++. +++++.+ .......|++. ...+|++++++++ ++++++|++|+|+++++.
T Consensus 28 ~~~~~l~~Nenp----~~~~~~~--------~~~~~~~Yp~~-~~~~l~~~~a~~~------g~~~~~I~~~~Gs~e~i~ 88 (351)
T PRK01688 28 NGDVWLNANEYP----TAVEFQL--------TQQTLNRYPEC-QPKAVIENYAAYA------GVKPEQVLVSRGADEGIE 88 (351)
T ss_pred CCceEecCCCCC----CCCChhh--------cccccccCCCC-ChHHHHHHHHHHh------CCCHHHEEEcCCHHHHHH
Confidence 356999999752 4455432 11234568775 3478999999997 578999999999999999
Q ss_pred HHHHHhcCCC-CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 122 VILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 122 ~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
.++++++++| |.|+++.|+|..|...++..|.+++.+++.. ++.+|++.+++.+ .++++++++|||||||.+++.+
T Consensus 89 ~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~ 165 (351)
T PRK01688 89 LLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD--NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQ 165 (351)
T ss_pred HHHHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHH
Confidence 9999999987 9999999999999999999999999998743 4789999999887 5789999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
++++|++.|++ +.++|+||+|.+|.... .....+....++|+++||||.||++|+|+||++++. ++++
T Consensus 166 ~l~~l~~~~~~-~~~vivDEay~~f~~~~---s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~--------~~i~ 233 (351)
T PRK01688 166 DLRTLLELTRG-KAIVVADEAYIEFCPQA---SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANE--------EVIN 233 (351)
T ss_pred HHHHHHHhCCC-CcEEEEECchhhcCCCC---ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCH--------HHHH
Confidence 99999999976 67899999999976321 111222345689999999999999999999998743 5778
Q ss_pred HHHhhhcccCCCccccccc
Q 022213 281 SIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 281 ~~~~~~~~~~~~~~~~q~~ 299 (301)
.+++.... .+.+.+.|.+
T Consensus 234 ~l~~~~~~-~~v~~~~~~~ 251 (351)
T PRK01688 234 LLLKVIAP-YPLSTPVADI 251 (351)
T ss_pred HHHhccCC-CCCCHHHHHH
Confidence 88776542 3455555543
No 97
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=4.2e-33 Score=252.27 Aligned_cols=203 Identities=22% Similarity=0.390 Sum_probs=167.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCC-CEEEEcCCCCcchHHHHHhcCceE
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEV 155 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~ 155 (301)
+..|+++ +..+||+++|+++ ++++++|++|+|+++++..++++++.+| |+|++++|+|..|...++..|.++
T Consensus 53 ~~~Y~~~-~~~~lr~~ia~~~------~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g~~~ 125 (364)
T PRK04781 53 TRRYPDP-QPPGLRSALAALY------GCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPL 125 (364)
T ss_pred hccCCCC-CHHHHHHHHHHHh------CcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEE
Confidence 3478875 4689999999998 4688999999999999999999999998 899999999999988889999999
Q ss_pred EEeecCC-CCCCCCCHHHHHhhc-ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC
Q 022213 156 RHFDLLP-ERNWEVDLDAVEALA-DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT 233 (301)
Q Consensus 156 ~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~ 233 (301)
+.+++.. ++++.+|++++.+.+ .++++++++++||||||.+++.++++++++.|+ ++++||+||+|.+|.+.. .
T Consensus 126 ~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~---~ 201 (364)
T PRK04781 126 VEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDVP---S 201 (364)
T ss_pred EEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCc---c
Confidence 9999743 456778988886544 567899999999999999999999999999885 478999999999987632 1
Q ss_pred CccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCccccccc
Q 022213 234 PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 234 ~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 299 (301)
.+...+..+++|+++||||.|++||+|+||++++. ++++++++.... .+.+.+.|.+
T Consensus 202 ~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~--------~l~~~l~~~~~~-~~~~~~~~~~ 258 (364)
T PRK04781 202 AVGLLARYDNLAVLRTLSKAHALAAARIGSLIANA--------ELIAVLRRCQAP-YPVPTPCAAL 258 (364)
T ss_pred hHHHHhhCCCEEEEecChhhcccccceeeeeeCCH--------HHHHHHHhccCC-CCCCHHHHHH
Confidence 12223445689999999999999999999999743 588888877553 3456666653
No 98
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=100.00 E-value=7.9e-33 Score=250.49 Aligned_cols=228 Identities=21% Similarity=0.396 Sum_probs=182.3
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEE-cCCHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYV-TLGCKQA 119 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~-t~g~~~a 119 (301)
+.++|+|+.|++. +++++.+.+++.+.+.. ...|+++. ..++|+++++++ ++++++|++ |+|++++
T Consensus 33 ~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~y~~~~-~~~lr~~ia~~~------~~~~~~i~~~~~Ga~~~ 99 (361)
T PRK00950 33 PESIIKLGSNENP----LGPSPKAVEAIEKELSK--IHRYPEPD-APELREALSKYT------GVPVENIIVGGDGMDEV 99 (361)
T ss_pred ccceEEccCCCCC----CCCCHHHHHHHHHHHHh--hcCCCCCC-HHHHHHHHHHHh------CCCHHHEEEeCCCHHHH
Confidence 4589999999853 56677888888776653 34687754 489999999998 467889999 7999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+..++++++++||+|++++|+|..+...++..|.+++.++. ++++.++++.+++.++.+++++++++|+||||.+++.
T Consensus 100 i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~ 177 (361)
T PRK00950 100 IDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKR--EEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPE 177 (361)
T ss_pred HHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec--CCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCH
Confidence 99999999999999999999999998888999999998874 3456799999999888788999999999999999996
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
+++++| |+++++++|+|++|.++.. ....++ ....+++++++||||.|++||+|+||+++++ +++
T Consensus 178 ~~l~~l---~~~~~~~li~De~y~~~~~--~~~~~~--~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~--------~~~ 242 (361)
T PRK00950 178 EDIRKI---LESTDALVFVDEAYVEFAE--YDYTPL--ALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE--------WLI 242 (361)
T ss_pred HHHHHH---HHHCCcEEEEECchhhhCc--cchHHH--HHhcCCEEEEEeehHhhcCchhhcchhcCCH--------HHH
Confidence 665555 5678999999999998762 222221 1233578999999999999999999998743 477
Q ss_pred HHHHhhhcccCCCccccccc
Q 022213 280 DSIKDCLSIYSDIPTFIQVC 299 (301)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~ 299 (301)
+++++.... .+.+.++|.+
T Consensus 243 ~~~~~~~~~-~~~~~~~~~~ 261 (361)
T PRK00950 243 DYYMRAKTP-FSLTRLSQAA 261 (361)
T ss_pred HHHHHhcCC-CCCCHHHHHH
Confidence 777776543 2355666654
No 99
>PRK07908 hypothetical protein; Provisional
Probab=100.00 E-value=4.8e-32 Score=244.28 Aligned_cols=221 Identities=18% Similarity=0.255 Sum_probs=173.8
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
.+++++|+.|++. +++|+.+.+++.+.+.. ...|++..|..+||+++++++ ++++++|++|+|+++++
T Consensus 21 ~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~~------~~~~~~I~it~Ga~~al 88 (349)
T PRK07908 21 GPGLLDFAVNVRH----DTPPEWLRERLAARLGD--LAAYPSTEDERRARAAVAARH------GRTPDEVLLLAGAAEGF 88 (349)
T ss_pred CCCeEEecCCCCC----CCCCHHHHHHHHHHhhH--hhcCCCccchHHHHHHHHHHh------CcChhhEEECCCHHHHH
Confidence 6789999999863 67788899998887753 457998889999999999998 46889999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
..+++ +++ +.++++.|+|..+...++..|++++.++++.+ +.+|++.+ ++++++++++|||||||.+++.+
T Consensus 89 ~~~~~--l~~-~~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~--~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~ 159 (349)
T PRK07908 89 ALLAR--LRP-RRAAVVHPSFTEPEAALRAAGIPVHRVVLDPP--FRLDPAAV----PDDADLVVIGNPTNPTSVLHPAE 159 (349)
T ss_pred HHHHh--cCC-CeEEEeCCCChHHHHHHHHcCCEEEeeccCcc--cCcChhHh----ccCCCEEEEcCCCCCCCCCcCHH
Confidence 99988 456 46778899999999999999999999988543 66888754 34688999999999999999966
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
++. ++|+ ++.++|+||+|.++.++ . ..++... ...++++++||||.|+++|+|+||++++. ++++
T Consensus 160 ~l~---~l~~-~~~~iIvDe~y~~~~~~-~-~~~l~~~-~~~~~i~i~S~SK~~~l~GlRiG~~~~~~--------~~~~ 224 (349)
T PRK07908 160 QLL---ALRR-PGRILVVDEAFADAVPG-E-PESLAGD-DLPGVLVLRSLTKTWSLAGLRVGYALGAP--------DVLA 224 (349)
T ss_pred HHH---HHHh-cCCEEEEECcchhhccC-C-ccccccc-cCCCEEEEeecccccCCccceeeeeecCH--------HHHH
Confidence 554 5554 47788899999987543 2 3344332 23479999999999999999999999743 4777
Q ss_pred HHHhhhcccCCCcccccc
Q 022213 281 SIKDCLSIYSDIPTFIQV 298 (301)
Q Consensus 281 ~~~~~~~~~~~~~~~~q~ 298 (301)
+++..... ...+++.|.
T Consensus 225 ~~~~~~~~-~~~~~~~~~ 241 (349)
T PRK07908 225 RLTRGRAH-WPVGTLQLE 241 (349)
T ss_pred HHHhcCCC-CCccHHHHH
Confidence 77765432 234444443
No 100
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-33 Score=239.36 Aligned_cols=216 Identities=24% Similarity=0.425 Sum_probs=188.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCC--CCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCc
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLP--YKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQV 153 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~ 153 (301)
+..|.+-.|++++|+++|+|+.+.++ +..+|+++++++|+|.+.+.+...|++|||..++|.|.|+++..-++ +.|+
T Consensus 114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgv 193 (471)
T KOG0256|consen 114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGV 193 (471)
T ss_pred HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCc
Confidence 45788889999999999999998654 45789999999999999999999999999999999999999976665 4689
Q ss_pred eEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213 154 EVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF 227 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~ 227 (301)
+++++.+..+++|+++.+.+|.++.+ +.+.++++||+||.|.+++++++..++++|.++|+.+|+||+|+..+|
T Consensus 194 eivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF 273 (471)
T KOG0256|consen 194 EIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVF 273 (471)
T ss_pred eEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccccc
Confidence 99999999999999999999987743 578899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCC-----CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213 228 GSIPYTPMGLFGS-----IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 228 ~~~~~~~~~~~~~-----~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
+...+.++.++.. .++|.+++|+||.||+||+|+|.+...+. +++...++..+ +...|...|..+
T Consensus 274 ~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne-------~VvsaA~kmss-f~~vSs~tQ~~l 343 (471)
T KOG0256|consen 274 DKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNE-------DVVSAATKMSS-FGLVSSQTQYLL 343 (471)
T ss_pred CccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecCh-------HHHHHHHHHhh-ccCCcHHHHHHH
Confidence 9888888776543 34699999999999999999999997654 47788777766 344666777643
No 101
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=100.00 E-value=2.3e-32 Score=244.63 Aligned_cols=204 Identities=20% Similarity=0.281 Sum_probs=163.2
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV 122 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~ 122 (301)
.+|+|+.++. | +.. . .....|+.+ ...+||+++|+++ ++++++|++|+|+++++..
T Consensus 17 ~~i~l~~Nen---p-~~~-------~------~~~~~Yp~~-~~~~lr~~ia~~~------~~~~~~I~it~Gs~~~l~~ 72 (332)
T PRK06425 17 RIIDFSANIN---D-FMD-------I------GDISIYPEI-SYTDIEDQIKIYT------QGLKIKVLIGPGLTHFIYR 72 (332)
T ss_pred CEEEeccccC---C-CcC-------h------hhcccCcCc-CHHHHHHHHHHHh------CCCcceEEECCCHHHHHHH
Confidence 6899999964 2 210 0 123368764 4789999999998 5688999999999999999
Q ss_pred HHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213 123 ILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL 202 (301)
Q Consensus 123 ~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l 202 (301)
+++ ++++| .|++++|+|..|...++..|++++.++++. +..+.+.++. .+++++++++||||||.+++.+++
T Consensus 73 ~~~-~~~~~-~vv~~~P~y~~y~~~~~~~G~~v~~vp~~~---~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~ 144 (332)
T PRK06425 73 LLS-YINVG-NIIIVEPNFNEYKGYAFTHGIRISALPFNL---INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSL 144 (332)
T ss_pred HHH-HhCCC-cEEEeCCChHHHHHHHHHcCCeEEEEeCCc---ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHH
Confidence 997 46776 577779999999999999999999999853 3456655543 378899999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHH
Q 022213 203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSI 282 (301)
Q Consensus 203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~ 282 (301)
++|+++|++++++||+||+|.++.+++. ..........+++|+++||||.|++||+|+||++++. ++++++
T Consensus 145 ~~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~--------~li~~l 215 (332)
T PRK06425 145 LTISEICRKKGALLFIDEAFIDFVPNRA-EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDD--------YNMKIS 215 (332)
T ss_pred HHHHHHHHHcCCEEEEecchhccccccc-hhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCH--------HHHHHH
Confidence 9999999999999999999999987532 2222222334689999999999999999999999853 477777
Q ss_pred Hhhhc
Q 022213 283 KDCLS 287 (301)
Q Consensus 283 ~~~~~ 287 (301)
++...
T Consensus 216 ~~~~~ 220 (332)
T PRK06425 216 RKITE 220 (332)
T ss_pred HHcCC
Confidence 76543
No 102
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=100.00 E-value=4.3e-32 Score=243.28 Aligned_cols=212 Identities=16% Similarity=0.212 Sum_probs=162.6
Q ss_pred CCeeeccCCCCCCCCCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-CCCEEEcCCHHHH
Q 022213 42 RPVVPLGYGDPTAFPCFRTA-VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQA 119 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t~g~~~a 119 (301)
..+|+|+.+.. | +++| +.+.. ..+ ..|+.. . .+||+++++++ ++. +++|++|+|++++
T Consensus 24 ~~~i~ls~Nen---p-~~~~~~~~~~---~~~-----~~Yp~~-~-~~L~~~ia~~~------~~~~~~~I~i~~Gs~e~ 83 (339)
T PRK06959 24 DAWLDLSTGIN---P-HGYPVPPVPA---DAW-----RRLPED-D-DGLAACAARYY------GAPDAAHVLPVAGSQAA 83 (339)
T ss_pred hhhceeccCCC---C-CCCCCCCCCH---HHH-----HhCCCc-h-HHHHHHHHHHh------CCCCcccEEECcCHHHH
Confidence 56899999963 2 2222 11111 222 258764 3 89999999998 344 5899999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+..+.. ++++|| |++++|+|..|...++..|.+++.++.+. +.+ .+..+.+++++||||||.+++.
T Consensus 84 i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~--------~~~----~~~~~~v~l~nPnNPTG~~~s~ 149 (339)
T PRK06959 84 IRALPA-LLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA--------DTL----PAALTHLIVVNPNNPTAERLPA 149 (339)
T ss_pred HHHHHH-hcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--------hhc----cccCCEEEEeCCCCCCCCCCCH
Confidence 987755 567877 88999999999999999999998887532 222 2245789999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
+++++|++.|++++.++|+||+|.++.+. .++..+....++|+++||||.|++||+|+||++++. +++
T Consensus 150 ~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~--------~li 217 (339)
T PRK06959 150 ARLLRWHAQLAARGGTLIVDEAFADTLPA----ASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAP--------ALL 217 (339)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCccCCCc----ccchhccCCCCEEEEecChhhcCCcchheEEEecCH--------HHH
Confidence 99999999999999999999999997643 233333234679999999999999999999999843 588
Q ss_pred HHHHhhhcccCCCcccccccC
Q 022213 280 DSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~~ 300 (301)
+++++... ..+.+.+.|.++
T Consensus 218 ~~l~~~~~-~~~vs~~~q~a~ 237 (339)
T PRK06959 218 AALRDALG-AWTVSGPARHAV 237 (339)
T ss_pred HHHHHhcC-CCCCcHHHHHHH
Confidence 88888765 334677777653
No 103
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=1.3e-32 Score=248.46 Aligned_cols=220 Identities=20% Similarity=0.388 Sum_probs=173.9
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE 121 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~ 121 (301)
.++|+|+.|++. +++++.+ ... ....|++. +..+||+++|+++ ++++++|++|+|+++++.
T Consensus 31 ~~~~~l~~ne~~----~~~~~~~------~~~--~~~~Yp~~-~~~~Lr~aia~~~------~~~~~~I~it~Gs~~~i~ 91 (354)
T PRK04635 31 RGDIWINANESP----FNNEYKL------DLA--RLNRYPEC-QPPELINAYSAYA------GVAPEQILTSRGADEAIE 91 (354)
T ss_pred CCcEEeeCCCCC----CCCChhh------hhH--HhccCCCC-CHHHHHHHHHHHh------CcCHHHEEEeCCHHHHHH
Confidence 467999999853 4444332 111 23478875 5799999999997 578999999999999999
Q ss_pred HHHHHhcCCC-CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213 122 VILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 122 ~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 200 (301)
.++++++++| |+|+++.|+|..|...++..|++++.+++.. ++.+|.+.++. + .+++++++++||||||.+++.+
T Consensus 92 ~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~ 167 (354)
T PRK04635 92 LLIRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA--DYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRA 167 (354)
T ss_pred HHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC--CCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHH
Confidence 9999999998 9999999999999988999999999999853 46789888874 3 5789999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID 280 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~ 280 (301)
++++|++.|+ +++||+||+|.++.... ....+ .....++|+++||||.|+++|+|+||++++. ++++
T Consensus 168 ~l~~l~~~~~--~~~vivDeay~~~~~~~-s~~~~--~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~--------~~~~ 234 (354)
T PRK04635 168 DIEQLIEMTP--DAIVVVDEAYIEFCPEY-SVADL--LASYPNLVVLRTLSKAFALAGARCGFTLANE--------ELIE 234 (354)
T ss_pred HHHHHHHhCC--CcEEEEeCchHhhccCc-chHHH--HhhCCCEEEEechHHHhhhhHHHHhhhhCCH--------HHHH
Confidence 9999999876 49999999999876321 11111 2234679999999999999999999998743 4777
Q ss_pred HHHhhhcccCCCcccccc
Q 022213 281 SIKDCLSIYSDIPTFIQV 298 (301)
Q Consensus 281 ~~~~~~~~~~~~~~~~q~ 298 (301)
.++.... ..+.+.+.|.
T Consensus 235 ~l~~~~~-~~~~~~~~~~ 251 (354)
T PRK04635 235 ILMRVIA-PYPVPLPVSE 251 (354)
T ss_pred HHHhhcC-CCCCCHHHHH
Confidence 7766543 2344555553
No 104
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.98 E-value=3.6e-31 Score=236.68 Aligned_cols=218 Identities=21% Similarity=0.310 Sum_probs=173.5
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA 119 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a 119 (301)
..+++++|+.|.|. +++| ..+... ..+.+|+++.+ +++|+++++++ ++++++|++|+|++++
T Consensus 15 ~~~~~~~~~~~~~~----~~~~--~~~~~~-----~~~~~y~~~~~-~~lr~~la~~~------~~~~~~i~~t~G~~~~ 76 (330)
T TIGR01140 15 PPEDWLDFSTGINP----LGPP--VPPIPA-----SAWARYPDPEY-DELRAAAAAYY------GLPAASVLPVNGAQEA 76 (330)
T ss_pred ChhheeEccccCCC----CCCC--hhhcch-----HHHhhCCCccH-HHHHHHHHHHh------CCChhhEEECCCHHHH
Confidence 35679999999854 2333 222111 12447888765 99999999998 4678999999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199 (301)
Q Consensus 120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 199 (301)
+..+.+. +.+| .|++++|+|..+...++..|++++.++ |++.+++.++ +++++++++|+||||.+++.
T Consensus 77 i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~~-~~~~v~i~~p~NPtG~~~~~ 144 (330)
T TIGR01140 77 IYLLPRL-LAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALE-ELDVLVLCNPNNPTGRLIPP 144 (330)
T ss_pred HHHHHHH-hCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhcc-cCCEEEEeCCCCCCCCCCCH
Confidence 9998766 4677 799999999999999999999988775 7888988884 57789999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc-CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI 278 (301)
Q Consensus 200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~ 278 (301)
+++++|+++|+++|+++|+|++|.++.+.. ++..+ +..+++|+++||||.|+++|+|+||+++++ ++
T Consensus 145 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~----~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~--------~~ 212 (330)
T TIGR01140 145 ETLLALAARLRARGGWLVVDEAFIDFTPDA----SLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHP--------AL 212 (330)
T ss_pred HHHHHHHHHhHhcCCEEEEECcccccCCcc----chhhHhccCCCEEEEEecchhhcCchhhhhheeCCH--------HH
Confidence 999999999999999999999999877542 22222 234679999999999999999999999843 47
Q ss_pred HHHHHhhhcccCCCcccccccC
Q 022213 279 IDSIKDCLSIYSDIPTFIQVCE 300 (301)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~q~~~ 300 (301)
+++++..... .+.+.++|.++
T Consensus 213 ~~~l~~~~~~-~~~s~~~q~~~ 233 (330)
T TIGR01140 213 LARLREALGP-WTVNGPARAAG 233 (330)
T ss_pred HHHHHhcCCC-CCchHHHHHHH
Confidence 7777776542 34566777653
No 105
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=99.97 E-value=7.3e-31 Score=228.86 Aligned_cols=276 Identities=20% Similarity=0.270 Sum_probs=200.4
Q ss_pred cccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHH--------H----------H
Q 022213 7 NKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAED--------A----------I 68 (301)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~--------~----------~ 68 (301)
...+++.+.+.+..+.++.+.+.... .+.+.++|+|+.|.|+.. .|+......+ . +
T Consensus 6 ~dys~~ls~es~srk~~p~~~~~~~~-----s~~~i~~i~lagGlPnp~-~fp~~~~s~~p~~~~~~e~~~~~~~~~~~~ 79 (472)
T KOG0634|consen 6 KDYSHHLSKESASRKLSPLRALGDIK-----SASPISIISLAGGLPNPD-YFPIRSDSIKPQGSWKKENGKKLNNVTFAF 79 (472)
T ss_pred ccHHHHhcccccccccChHHHhhhHh-----hcCCCceEEecCCCCCCC-cccccccccccccCccccccccccceeeec
Confidence 34555666566666777777666522 223455899999977632 1222111111 0 0
Q ss_pred HHHHhc-----CCCCCCCCCCCCHHHHHHHHHHHhhhC-CCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCc
Q 022213 69 VDAVRS-----GKFNCYATNSGIPPARRAIADYLSRDL-PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP 142 (301)
Q Consensus 69 ~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~l~~~~-~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~ 142 (301)
.+..+. ....+|++..|.++|+..+.++..... ......-+|++|+|.+.+++.+++.++++||.|+++.++|.
T Consensus 80 ~~~~~~~~l~~s~alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~ 159 (472)
T KOG0634|consen 80 ENEASENTLPLSRALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYP 159 (472)
T ss_pred cccCCcccchhhhhhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccch
Confidence 111111 124589999999999999999654222 22334458999999999999999999999999999999999
Q ss_pred chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC-------c-cEEEEcCC--CCCcccCCCHHHHHHHHHHHHhC
Q 022213 143 YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN-------T-AAMVIINP--GNPCGNVFTYHHLQEIAEMARKL 212 (301)
Q Consensus 143 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~-~~v~l~~p--~nptG~~~~~~~l~~i~~~~~~~ 212 (301)
+.....+..|+++++|+++ ..++++|.|++.++.. + .-|+++.| +||||.+++.+++++|.++|+||
T Consensus 160 ~AL~s~~a~gv~~ipv~md---~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKy 236 (472)
T KOG0634|consen 160 SALQSMEALGVKIIPVKMD---QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKY 236 (472)
T ss_pred HHHHhccccCceEEecccc---CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHc
Confidence 9989999999999888874 3458999999876431 1 23455555 89999999999999999999999
Q ss_pred CCeEEEccCCcccccCC--------CC-----------CCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcc
Q 022213 213 RVMVVADEVYGHLTFGS--------IP-----------YTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIF 273 (301)
Q Consensus 213 ~~~ii~D~~y~~~~~~~--------~~-----------~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~ 273 (301)
+++||+||.|..+.|+. .+ .+++.+.+.++|||...||||. -+||+|+||+.+++.
T Consensus 237 DfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKi-iaPGlRlG~it~~~~---- 311 (472)
T KOG0634|consen 237 DFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKI-IAPGLRLGWITGNSL---- 311 (472)
T ss_pred CEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhh-hcCcceeEEeecCHH----
Confidence 99999999999999872 11 2334455667899999999999 689999999998653
Q ss_pred cchhHHHHHHhhhcc-cCCCcccccccC
Q 022213 274 QKSGIIDSIKDCLSI-YSDIPTFIQVCE 300 (301)
Q Consensus 274 ~~~~~~~~~~~~~~~-~~~~~~~~q~~~ 300 (301)
++++.-+..++ ..+++.++|.++
T Consensus 312 ----~l~ril~~ae~~t~~pSg~sq~iv 335 (472)
T KOG0634|consen 312 ----FLKRILDLAEVATSGPSGFSQGIV 335 (472)
T ss_pred ----HHHHHhhhcceeecCcccccHHHH
Confidence 55666555543 446788888654
No 106
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=8.3e-30 Score=219.22 Aligned_cols=276 Identities=24% Similarity=0.374 Sum_probs=219.1
Q ss_pred CCcccHHHHHHHHHhhcccCC---CCCeeeccCCCCCCCCCC---------------------CChHHHHHHHHHHHhc-
Q 022213 20 APAVTVKTSLASIIDSVNKND---PRPVVPLGYGDPTAFPCF---------------------RTAVEAEDAIVDAVRS- 74 (301)
Q Consensus 20 ~~~~~i~~~~~~~~~~~~~~~---~~~~i~l~~g~p~~~p~~---------------------~~~~~~~~~~~~~~~~- 74 (301)
+-.-+|--.+.++.+++.+.. =..+|+-++|+|....+- ..|..+++...+.+..
T Consensus 23 AVRG~i~~rA~El~~eL~~~~~~PF~eiI~aNIGnpqamgQ~PiTF~RQvlal~~~p~lLd~~~fp~Dai~RA~~~L~~~ 102 (475)
T KOG0258|consen 23 AVRGPIVIRADELEKELKKGVKKPFDEIIRANIGNPQAMGQKPITFLRQVLALCQYPELLDSPEFPTDAIKRAKRILNDC 102 (475)
T ss_pred hhccchhhhHHHHHHHHHhcccCChHHHHhhcCCCHHHhCCCChhHHHHHHHHhcChhhcCCCCCCHHHHHHHHHHHHhc
Confidence 333344444445555554322 234899999998642111 1223344444445543
Q ss_pred -CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCCcchHHHHHhcC
Q 022213 75 -GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRPGWPYYEGIAQRKQ 152 (301)
Q Consensus 75 -~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g 152 (301)
+.+..|..++|++-+|+.+|+|+.++.|...++++|++|+|++.|+..++..++ .+.|.|++|-|.|+-|...+..+|
T Consensus 103 gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~~ 182 (475)
T KOG0258|consen 103 GGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLLG 182 (475)
T ss_pred CCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHhC
Confidence 357789999999999999999999999988999999999999999999999987 478999999999999999999999
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhccc-----CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALADK-----NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF 227 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~ 227 (301)
...+.+.++.+.+|.+|.++|++.+++ +++++++.||.||||.+++++.+++|+++|.+++++++.||+|.+.+|
T Consensus 183 ~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy 262 (475)
T KOG0258|consen 183 GTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVY 262 (475)
T ss_pred CcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhcc
Confidence 999999999999999999999987754 678999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCcccc----C---C-CCCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCccccc
Q 022213 228 GS-IPYTPMGLF----G---S-IVPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297 (301)
Q Consensus 228 ~~-~~~~~~~~~----~---~-~~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 297 (301)
.. ..|+++... . . ...++.++|.||.+.. .|.|-||+-+-+.. ++..+.+.+......|++...|
T Consensus 263 ~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~-----prv~~qi~Kl~si~lc~~V~GQ 337 (475)
T KOG0258|consen 263 TTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRD-----PRVKQQIKKLASIKLCPQVSGQ 337 (475)
T ss_pred CCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCC-----hhHHHHHHHHHhhhhcCCccch
Confidence 75 367665532 1 1 2236999999999766 89999999775543 5677777777777778888888
Q ss_pred ccC
Q 022213 298 VCE 300 (301)
Q Consensus 298 ~~~ 300 (301)
..+
T Consensus 338 ~~v 340 (475)
T KOG0258|consen 338 KLV 340 (475)
T ss_pred hhh
Confidence 654
No 107
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.96 E-value=5.3e-28 Score=217.18 Aligned_cols=244 Identities=31% Similarity=0.531 Sum_probs=190.2
Q ss_pred eeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHH
Q 022213 45 VPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVIL 124 (301)
Q Consensus 45 i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~ 124 (301)
|+|+.|++. +..++.+.+++.+.-.......|.+..|..++++.+++++...++.....+++++++|+++++..++
T Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~ 76 (350)
T cd00609 1 IDLSIGEPD----FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLL 76 (350)
T ss_pred CCCCCCCCC----CCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence 578889863 3334444444433222223457888889999999999999887665566889999999999999999
Q ss_pred HHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHH
Q 022213 125 SVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQE 204 (301)
Q Consensus 125 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~ 204 (301)
.++.++||+|+++.++|.++...++..|.+++.++.........+.+.++...+++++++++++|+||||.+++.+++++
T Consensus 77 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~ 156 (350)
T cd00609 77 RALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEE 156 (350)
T ss_pred HHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHH
Confidence 99999999999999999999999999999999999865544333336666666778899999999999999999999999
Q ss_pred HHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213 205 IAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 205 i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
|+++|+++|+++|+|++|+.+.+.+.....+...+..+.+++++|+||.++.+|.|+||++++++ ++.+.++.
T Consensus 157 l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~-------~~~~~~~~ 229 (350)
T cd00609 157 LAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE-------ELLERLKK 229 (350)
T ss_pred HHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHH-------HHHHHHHH
Confidence 99999999999999999998877654332122233445679999999999889999999998542 47777776
Q ss_pred hhcc-cCCCccccccc
Q 022213 285 CLSI-YSDIPTFIQVC 299 (301)
Q Consensus 285 ~~~~-~~~~~~~~q~~ 299 (301)
.... ..+++...|.+
T Consensus 230 ~~~~~~~~~~~~~~~~ 245 (350)
T cd00609 230 LLPYTTSGPSTLSQAA 245 (350)
T ss_pred HHHhcccCCChHHHHH
Confidence 6543 34566666654
No 108
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.96 E-value=1.9e-28 Score=226.73 Aligned_cols=246 Identities=16% Similarity=0.134 Sum_probs=185.3
Q ss_pred chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChH---HHHHHHHHHHhcCCCCCCCCCCCCHHHH
Q 022213 14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAV---EAEDAIVDAVRSGKFNCYATNSGIPPAR 90 (301)
Q Consensus 14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~---~~~~~~~~~~~~~~~~~Y~~~~g~~~lr 90 (301)
+-+.+..+++.+..+.+...+ + ++.+.++|+|++|+|. ++|++|. .+.+++.+++..+. ..|++..|..+||
T Consensus 10 ~~r~~~v~~~~~~~~~~~~~~-l-~~~g~~~~~L~~g~p~--~D~~tds~t~a~~~a~~~a~~~g~-~~Y~~~~g~~~Lr 84 (460)
T PRK13238 10 PFRIKMVEPIRLTTREERERA-L-AEAGYNPFLLKSEDVF--IDLLTDSGTGAMSDRQWAAMMRGD-EAYAGSRSYYRLE 84 (460)
T ss_pred ceeeceeccccccCHHHHHHH-H-HHcCCCEEeCCCCCCC--CCCCCCCCchhhhHHHHHHHHhCC-cccCCCCCHHHHH
Confidence 445556666666666554333 2 2358899999999984 3566655 57777777776544 3799999999999
Q ss_pred HHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC------C
Q 022213 91 RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE------R 164 (301)
Q Consensus 91 ~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~------~ 164 (301)
+++++++. .+++++|+|+++|+..++.++++||| |++++|.|..|...+...|.+++.+++... +
T Consensus 85 eaia~~~~--------~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~ 155 (460)
T PRK13238 85 DAVKDIFG--------YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRH 155 (460)
T ss_pred HHHHHHhC--------CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccc
Confidence 99999993 35799999999999999999999999 999999999999889999999999998542 3
Q ss_pred CCC--CCHHHHHhhccc----CccEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcc--cccCCC-----
Q 022213 165 NWE--VDLDAVEALADK----NTAAMVIINPGNPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGH--LTFGSI----- 230 (301)
Q Consensus 165 ~~~--~~~~~l~~~~~~----~~~~v~l~~p~nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~--~~~~~~----- 230 (301)
.|. +|+++|++.+++ +++++++++|+|||| .+++.+++++|.++|++||+++|+|+++.. ..|...
T Consensus 156 ~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~ 235 (460)
T PRK13238 156 PFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGY 235 (460)
T ss_pred cccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccc
Confidence 454 999999999874 688999999999997 999999999999999999999999997642 334221
Q ss_pred CCCCccccCCCCCEEEEecCcccCCCCccee-----E-EEEeeCCCCcccchhHHHHHHhh
Q 022213 231 PYTPMGLFGSIVPVITLGSISKRWLVPGWRF-----G-WLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 231 ~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv-----G-~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
...++..+ ++.++|++|.+.++|+|+ | |+++++ +++.++++..
T Consensus 236 ~~~si~~i-----~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d-------~~l~~~~~~~ 284 (460)
T PRK13238 236 KDKSIKEI-----AREMFSYADGLTMSAKKDAMVNIGGLLCFRD-------EDLFTECRTL 284 (460)
T ss_pred cCCCHHHH-----hhhhcccCcEEEEecccCCCCcceeEEEcCh-------HHHHHHhhhc
Confidence 12222211 133456666666666665 3 455432 3577777766
No 109
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.8e-26 Score=192.78 Aligned_cols=259 Identities=24% Similarity=0.389 Sum_probs=189.2
Q ss_pred hcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC----CCCCCCCCCCCHHHHHHH
Q 022213 18 KAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG----KFNCYATNSGIPPARRAI 93 (301)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~i 93 (301)
|...-++|..+++++.+.+. .++.|.|+.|+|...|.+ .....+...+.+.++ .+.+|..++|...|.+++
T Consensus 9 kft~~sGi~~lMdDl~d~Lr---t~g~imLggGNPa~iPem--~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~al 83 (417)
T COG3977 9 KFTRHSGITQLMDDLNDGLR---TPGAIMLGGGNPARIPEM--DDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDAL 83 (417)
T ss_pred HhhhhhhHHHHHHHHHhhcc---CCCceeeCCCCcccChhH--HHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHH
Confidence 45567889999999988774 456999999999765432 222333444444443 367899999999999999
Q ss_pred HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC---CC--CEEEEc-CCCCcchHHHHHhcCceEEE---eecCCCC
Q 022213 94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR---PG--ANVLLP-RPGWPYYEGIAQRKQVEVRH---FDLLPER 164 (301)
Q Consensus 94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~---~g--d~Vl~~-~p~~~~~~~~~~~~g~~~~~---~~~~~~~ 164 (301)
+.++++.+|.++.++||.+|+|++.+.+.++..+.. .| .+|++| .|.|.+|......-.+=+.. +++.+..
T Consensus 84 a~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g 163 (417)
T COG3977 84 AKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAG 163 (417)
T ss_pred HHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCccccccc
Confidence 999999999999999999999999999999988853 24 357776 89999885433221111111 1222333
Q ss_pred C--CCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC---
Q 022213 165 N--WEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG--- 239 (301)
Q Consensus 165 ~--~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~--- 239 (301)
. +.+|.+.+. +.+.+-++|++-|.||||.+++.+++.+|..++++||+.+|+|.+|+. +|+.+---+
T Consensus 164 ~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~------PFP~iifsd~~~ 235 (417)
T COG3977 164 QFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGV------PFPGIIFSDATP 235 (417)
T ss_pred ceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCC------CCCceecccccc
Confidence 3 346666655 346788899999999999999999999999999999999999999985 333322111
Q ss_pred -CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213 240 -SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV 298 (301)
Q Consensus 240 -~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~ 298 (301)
=.+|+|.|.|+||. |+||.|+|.+++. +++++.+..+.. .+..+....|.
T Consensus 236 ~w~~NiilC~SLSK~-GLPG~R~GIiIan--------e~viqaitnmn~iisLap~~~G~A 287 (417)
T COG3977 236 LWNENIILCMSLSKL-GLPGSRCGIIIAN--------EKVIQAITNMNGIISLAPGRMGPA 287 (417)
T ss_pred cCCCCEEEEeehhhc-CCCCcceeEEEcc--------HHHHHHHHhccceeeecCCCccHH
Confidence 13579999999998 9999999999973 458887776644 23344444443
No 110
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.94 E-value=5e-26 Score=196.84 Aligned_cols=277 Identities=22% Similarity=0.231 Sum_probs=201.6
Q ss_pred hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCC-CCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213 15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPT-AFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI 93 (301)
Q Consensus 15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 93 (301)
+.+...++++|..+.+...++ ..++.|||++|... .....+.-+.|.++-++.........|-+..|++++++++
T Consensus 3 ~~i~~~p~DpIlgL~e~f~~D----~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~ 78 (396)
T COG1448 3 EKIEAAPADPILGLKEAFKAD----PRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAV 78 (396)
T ss_pred cccccCCCCchhHHHHHHhcC----CCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHH
Confidence 345678999999999866543 46889999999331 1123455567777776666666677899999999999999
Q ss_pred HHHHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCC
Q 022213 94 ADYLSRDLPYKLSADDV--YVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVD 169 (301)
Q Consensus 94 a~~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 169 (301)
++++......-+..++| +=|.|+|.||..+...+.. +..+|.+++|+|.++..++...|.++..++.-...+..+|
T Consensus 79 ~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~d 158 (396)
T COG1448 79 QKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLD 158 (396)
T ss_pred HHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeecccccccccc
Confidence 99994321112445555 5599999999999988864 5677999999999999999999999999998666666799
Q ss_pred HHHHHhhccc--CccEEEEc-CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC-CCCCccccCC-CCCE
Q 022213 170 LDAVEALADK--NTAAMVII-NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI-PYTPMGLFGS-IVPV 244 (301)
Q Consensus 170 ~~~l~~~~~~--~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~~~-~~~v 244 (301)
.+.+...+++ ...+|++. .+|||||..++.++|++|+++.++++++.+.|-+|..|.-+-+ ....+..+.. ...+
T Consensus 159 f~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~ 238 (396)
T COG1448 159 FDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPEL 238 (396)
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcE
Confidence 9998887764 33444443 4599999999999999999999999999999999999765421 1112222222 2237
Q ss_pred EEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh-hcccCCCcccc
Q 022213 245 ITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC-LSIYSDIPTFI 296 (301)
Q Consensus 245 i~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 296 (301)
+++.||||+|++.|.|+|.+.+-.++... -.++.+.++.. +...+++|...
T Consensus 239 lva~S~SKnfgLYgERVGa~~vva~~~~~-a~~v~sqlk~~iR~~ySnPP~~G 290 (396)
T COG1448 239 LVASSFSKNFGLYGERVGALSVVAEDAEE-ADRVLSQLKAIIRTNYSNPPAHG 290 (396)
T ss_pred EEEehhhhhhhhhhhccceeEEEeCCHHH-HHHHHHHHHHHHHhccCCCchhh
Confidence 99999999999999999996554432111 12233444444 33455555544
No 111
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.93 E-value=1.5e-24 Score=198.63 Aligned_cols=214 Identities=16% Similarity=0.172 Sum_probs=162.5
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCC---CC----HHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNS---GI----PPARRAIADYLSRDLPYKLSADDVYV 112 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~----~~lr~~ia~~l~~~~~~~~~~~~i~~ 112 (301)
++.++|+|+.|+| +.++.++.+.+++.++++.... .|+.+. |. .+|++++|+++. .+++++
T Consensus 36 ~g~~~i~~~~~~~---lg~~~~~~v~~~~~~~~~~~~~-~~~~s~~~~G~~~~~~~le~~ia~~~g--------~~~~ii 103 (393)
T TIGR01822 36 DGREVLNFCANNY---LGLSSHPDLIQAAKDALDEHGF-GMSSVRFICGTQDIHKELEAKIAAFLG--------TEDTIL 103 (393)
T ss_pred CCceEEEeeCCCc---cccCCCHHHHHHHHHHHHHhCC-CCCCcCcccCChHHHHHHHHHHHHHhC--------CCcEEE
Confidence 4788999999985 4677788999999888875222 566555 65 788999999882 357888
Q ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEE
Q 022213 113 TLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVI 186 (301)
Q Consensus 113 t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l 186 (301)
++|+++|+..++.+++++||.|+++.|.|+++...++..+.+...++ ..|++.+++.+++ +++++++
T Consensus 104 ~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~~v~~ 176 (393)
T TIGR01822 104 YASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGARHRLIAT 176 (393)
T ss_pred ECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCceEEEE
Confidence 89999999999999999999999999999999888877776664432 2788999887764 5677888
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEE
Q 022213 187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLV 265 (301)
Q Consensus 187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~ 265 (301)
.+++||||.+.+ +++|+++|++||+++|+|++|+...++..........+. ....++++|+||++ +|+|+||++
T Consensus 177 ~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l--~g~r~G~~~ 251 (393)
T TIGR01822 177 DGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKAL--GGASGGFTT 251 (393)
T ss_pred eCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHh--hCCCcEEEE
Confidence 889999999988 889999999999999999999643332111111111111 12459999999985 478999998
Q ss_pred eeCCCCcccchhHHHHHHhh
Q 022213 266 TNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~ 285 (301)
++. ++++.++..
T Consensus 252 ~~~--------~~~~~l~~~ 263 (393)
T TIGR01822 252 ARK--------EVVELLRQR 263 (393)
T ss_pred eCH--------HHHHHHHHh
Confidence 743 477777654
No 112
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.93 E-value=5.6e-25 Score=201.14 Aligned_cols=222 Identities=18% Similarity=0.173 Sum_probs=173.5
Q ss_pred CCCCeeeccCCCCCCCCCCCCh---HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTA---VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~---~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
.+.+++.|..+++-. +|..+ ..+.++...++..+.. .|++..|..+|++++++++. .+++++|+|+
T Consensus 9 ~g~n~~~l~~~~v~i--Dlltds~t~ams~~~~~a~~~gd~-~Y~~~~g~~~Leeaia~~~g--------~~~vv~t~~G 77 (431)
T cd00617 9 AGYNVFLLRSEDVYI--DLLTDSGTGAMSDYQWAAMMLGDE-AYAGSKSFYDLEDAVQDLFG--------FKHIIPTHQG 77 (431)
T ss_pred cCCCEEeCCCCCcCC--CCCCCCCcHHHHHHHHHHHHhCCC-ccCCCCCHHHHHHHHHHHHC--------CCeEEEcCCH
Confidence 488999999999821 34444 3555555666655543 59999999999999999983 3689999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCC--------CCCCHHHHHhhcccC----ccEE
Q 022213 117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERN--------WEVDLDAVEALADKN----TAAM 184 (301)
Q Consensus 117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~----~~~v 184 (301)
++|+..++.++++|||.| +++|.|..+...+...|.+++.+++.+..+ +.+|+++|++.++++ +++|
T Consensus 78 t~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I 156 (431)
T cd00617 78 RGAENILFSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYI 156 (431)
T ss_pred HHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEE
Confidence 999999999999999987 689999999889999999999999875432 349999999999765 6788
Q ss_pred EEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEccCCcc--ccc-----CCCCCCCccccCCCCCEEEEecCcccCCC
Q 022213 185 VIINPGNPC-GNVFTYHHLQEIAEMARKLRVMVVADEVYGH--LTF-----GSIPYTPMGLFGSIVPVITLGSISKRWLV 256 (301)
Q Consensus 185 ~l~~p~npt-G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~--~~~-----~~~~~~~~~~~~~~~~vi~~~s~SK~~~~ 256 (301)
++++|+||+ |..++.+++++|.++|++||++||+|++... ..| ++....++.. -++.++|+||.+.+
T Consensus 157 ~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~e-----i~~e~~s~sd~~~m 231 (431)
T cd00617 157 VLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAE-----IAREMFSYADGCTM 231 (431)
T ss_pred EEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHH-----HHHHhhccCCEEEE
Confidence 999999998 9999999999999999999999999999542 122 1112222221 12456678888878
Q ss_pred Ccce------eEEEEeeCCCCcccchhHHHHHHhh
Q 022213 257 PGWR------FGWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 257 ~G~r------vG~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
.|+| .||+++++ ++++++++.+
T Consensus 232 S~~K~~~~~~GG~i~~~d-------~~l~~~~~~~ 259 (431)
T cd00617 232 SAKKDGLVNIGGFLALRD-------DELYEEARQR 259 (431)
T ss_pred EeecCCCCccceEEEeCc-------HHHHHHHHHh
Confidence 8877 56888754 2477777754
No 113
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.92 E-value=6e-24 Score=194.70 Aligned_cols=220 Identities=15% Similarity=0.114 Sum_probs=163.1
Q ss_pred CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF--NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
.+++++|+|+.|++ |.++.++.+.+++.+.++.... ..|....|..++++++++++.+.++. +++|++|+|
T Consensus 39 ~~g~~~i~l~~~~~---~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~tsG- 111 (397)
T PRK06939 39 ADGKEVINFCANNY---LGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILYSSC- 111 (397)
T ss_pred cCCCeEEEeeccCc---cccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEEcCh-
Confidence 35788999999984 4577788899999888864322 12233468888999999988887662 367888887
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCC
Q 022213 117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPG 190 (301)
Q Consensus 117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~ 190 (301)
++++..++++++++||.|++++|+|+++...+...+.+++.++. .|++.+++.+++ ++++++..+.+
T Consensus 112 ~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~ 184 (397)
T PRK06939 112 FDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVF 184 (397)
T ss_pred HHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCc
Confidence 78999999999999999999999999998888888988877653 477888877653 55666666678
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
|++|...+ +++|+++|++|++++|+||+|....+...........+. ....++++|+||+++ |.|+||++++.
T Consensus 185 ~~~G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~--g~r~G~v~~~~- 258 (397)
T PRK06939 185 SMDGDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALG--GASGGYTAGRK- 258 (397)
T ss_pred CCCCCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhC--ccCceEEEeCH-
Confidence 99998766 889999999999999999999642222111111111111 124599999999973 56999999753
Q ss_pred CCcccchhHHHHHHhh
Q 022213 270 NGIFQKSGIIDSIKDC 285 (301)
Q Consensus 270 ~~~~~~~~~~~~~~~~ 285 (301)
++++.++..
T Consensus 259 -------~~~~~l~~~ 267 (397)
T PRK06939 259 -------EVIDWLRQR 267 (397)
T ss_pred -------HHHHHHHHh
Confidence 477777654
No 114
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.92 E-value=1.8e-23 Score=190.89 Aligned_cols=219 Identities=18% Similarity=0.204 Sum_probs=165.8
Q ss_pred CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
.+++++|+|+.|++ +.+++++.+.+++.++++.. ....|....|..++++++++++.+..+. ++.+++++|
T Consensus 30 ~~g~~~id~~~~~~---~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~~sG- 102 (385)
T TIGR01825 30 VNGKEVINLSSNNY---LGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVFQSG- 102 (385)
T ss_pred ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEECcH-
Confidence 35789999999874 35777788889988887642 2345777789999999999999886662 355777776
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc----CccEEEEcCCCCC
Q 022213 117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK----NTAAMVIINPGNP 192 (301)
Q Consensus 117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~np 192 (301)
++++..++.+++++||.|+++.|+|..+...+...|.++..++ .+|++++++.+++ +++++++++++||
T Consensus 103 ~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~ 175 (385)
T TIGR01825 103 FNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGVFSM 175 (385)
T ss_pred HHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecCCcC
Confidence 6677789999999999999999999998777777788776553 2678888876643 5677777888999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC-CCCCEEEEecCcccCCCCcceeEEEEeeCCCC
Q 022213 193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG-SIVPVITLGSISKRWLVPGWRFGWLVTNDPNG 271 (301)
Q Consensus 193 tG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~ 271 (301)
||.+.+ +++|.++|++||+++|+||+|..+.++.........++ ..+.+|++.||||.++++| ||++++.
T Consensus 176 tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~~--- 246 (385)
T TIGR01825 176 DGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGHK--- 246 (385)
T ss_pred CCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecCH---
Confidence 999998 78899999999999999999987665421111111111 1345799999999998776 9988632
Q ss_pred cccchhHHHHHHhh
Q 022213 272 IFQKSGIIDSIKDC 285 (301)
Q Consensus 272 ~~~~~~~~~~~~~~ 285 (301)
++++.+...
T Consensus 247 -----~~~~~~~~~ 255 (385)
T TIGR01825 247 -----ELIEYLKNR 255 (385)
T ss_pred -----HHHHHHHHh
Confidence 466776554
No 115
>PRK07049 methionine gamma-lyase; Validated
Probab=99.92 E-value=1.7e-23 Score=192.43 Aligned_cols=192 Identities=16% Similarity=0.198 Sum_probs=146.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcC
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQ 152 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g 152 (301)
+.+|+.+ ....|++.+|++. ..+++++++|+++|+..++.+++++||+|+++.|.|..+...+ ...|
T Consensus 77 y~R~~~P-t~~~Le~~lA~le--------g~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~G 147 (427)
T PRK07049 77 YSRFNHP-NSEIVEDRLAVYE--------GAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFG 147 (427)
T ss_pred ccCCCCc-CHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcC
Confidence 3456654 4689999999997 3457999999999999999999999999999999999986653 4578
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhcc-----cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh---CCCeEEEccCCcc
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALAD-----KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK---LRVMVVADEVYGH 224 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~---~~~~ii~D~~y~~ 224 (301)
++++.++. + .|++.+++.+. ++++++++++|+||||.+++.+++.+|++.|+. +++++|+|++|..
T Consensus 148 i~~v~~~~----~--~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~ 221 (427)
T PRK07049 148 VGAVGFAD----G--LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLG 221 (427)
T ss_pred cEEEEEeC----C--CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccc
Confidence 88666642 1 46677766553 468899999999999999999999988888653 6899999999876
Q ss_pred cccCCCCCCCccccCCCCCEEEEecCcccCC-CCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 225 LTFGSIPYTPMGLFGSIVPVITLGSISKRWL-VPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
..+. .++ .+ +..|++.|+||.++ .+|+|+||++++. +++++++.... ...+.+++.|.+
T Consensus 222 ~~~~----~pl-~~---g~divv~S~SK~~gG~~glr~G~vv~~~--------~l~~~l~~~~~~~g~~ls~~~a~l 282 (427)
T PRK07049 222 PVFQ----KPL-EH---GADLSVYSLTKYVGGHSDLVAGAVLGRK--------ALIRQVRALRSAIGTQLDPHSCWM 282 (427)
T ss_pred cccC----Ccc-cc---CCCEEEEcCceeecCCCCcEEEEEECCH--------HHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4332 122 11 23488999999999 5999999998642 47777776644 344566666654
No 116
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.91 E-value=4.9e-23 Score=186.07 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=157.8
Q ss_pred CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--CCCCCCCCC----CHHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213 39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FNCYATNSG----IPPARRAIADYLSRDLPYKLSADDVYV 112 (301)
Q Consensus 39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~ 112 (301)
.+++++|+|+.|+|- .++.++.+.+++.++++... ...|....| ..++++++++++. .++.|++
T Consensus 13 ~~g~~~id~~~~~~~---g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-------~~~~i~~ 82 (360)
T TIGR00858 13 RDGRRLLNFSSNDYL---GLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG-------TEAALLF 82 (360)
T ss_pred ECCceEEecccCCcc---cCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-------CCCEEEE
Confidence 358899999999751 35566889999998886411 112222223 3457777777762 2467777
Q ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc----CccEEEEcC
Q 022213 113 TLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK----NTAAMVIIN 188 (301)
Q Consensus 113 t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~ 188 (301)
++|+ +++..++++++++||+|+++.|+|..+...++..|.+++.++. .|++.+++.+++ +++++++.+
T Consensus 83 ~~G~-~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~~~~ 154 (360)
T TIGR00858 83 SSGY-LANVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIVTDG 154 (360)
T ss_pred CchH-HHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEEEeC
Confidence 7775 5555677888899999999999999998888889998877653 578888888754 356777888
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC--CCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY--TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
++||||...+ +++|.++|+++++++|+||+|..+.++.... .....+..++++|+++||||.|+++| ||+++
T Consensus 155 ~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G~~~~ 228 (360)
T TIGR00858 155 VFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG---AYVAG 228 (360)
T ss_pred CccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC---cEEEc
Confidence 9999999988 8888889999999999999998766543211 12222333467899999999998877 99987
Q ss_pred eCCCCcccchhHHHHHHhh
Q 022213 267 NDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~ 285 (301)
+. ++++.++..
T Consensus 229 ~~--------~~~~~~~~~ 239 (360)
T TIGR00858 229 SQ--------ALIDYLINR 239 (360)
T ss_pred CH--------HHHHHHHHh
Confidence 43 466666543
No 117
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.91 E-value=6.2e-23 Score=185.84 Aligned_cols=202 Identities=17% Similarity=0.192 Sum_probs=152.7
Q ss_pred CCChHHHHHHHHHHHhcCC---C-C-CCC--CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCC
Q 022213 58 FRTAVEAEDAIVDAVRSGK---F-N-CYA--TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARP 130 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~---~-~-~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~ 130 (301)
-+..+.+.+++.+...... . . ... ...-+.++++.+++++ ++ +++++|+|+++++..++.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~--~~i~~~~g~t~al~~~l~~~~~~ 82 (361)
T cd06452 11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL------GM--DEARVTPGAREGKFAVMHSLCEK 82 (361)
T ss_pred CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc------CC--ceEEEeCCHHHHHHHHHHHhcCC
Confidence 3456777888777653211 0 0 011 1123568888888887 23 78999999999999999999999
Q ss_pred CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-------cCccEEEEcCCCCCcccCCCHHHHH
Q 022213 131 GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-------KNTAAMVIINPGNPCGNVFTYHHLQ 203 (301)
Q Consensus 131 gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~v~l~~p~nptG~~~~~~~l~ 203 (301)
||+|+++.++|.+....++..|++++.++.+...++.+|++.+++.++ ++++++++++|+||||...+ ++
T Consensus 83 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~ 159 (361)
T cd06452 83 GDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AK 159 (361)
T ss_pred CCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HH
Confidence 999999999888776778889999999998665556799999998875 26789999999999999877 88
Q ss_pred HHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213 204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 204 ~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
+|+++|+++|+++|+|++|..... +.....++ ..++++|+||+++. +.|+||++++. +++++++
T Consensus 160 ~i~~~~~~~~~~vivD~a~~~g~~----~~~~~~~~---~d~~~~s~~K~l~~-~~~~G~l~~~~--------~~~~~l~ 223 (361)
T cd06452 160 KIAKVCHEYGVPLLLNGAYTVGRM----PVSGKELG---ADFIVGSGHKSMAA-SAPIGVLATTE--------EWADIVF 223 (361)
T ss_pred HHHHHHHHcCCeEEEECCcccCCc----CCCHHHcC---CCEEEecCCccccC-CCCeEEEEECH--------HHHHHHh
Confidence 888999999999999999985221 11222222 23899999999874 45999999853 3666665
Q ss_pred hhh
Q 022213 284 DCL 286 (301)
Q Consensus 284 ~~~ 286 (301)
+..
T Consensus 224 ~~~ 226 (361)
T cd06452 224 RTS 226 (361)
T ss_pred ccc
Confidence 543
No 118
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=99.91 E-value=3.9e-24 Score=175.59 Aligned_cols=201 Identities=22% Similarity=0.356 Sum_probs=159.9
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
++.++.|+..+... .|.|+. +. --..|+.++ ...++.+++.- -++.+|+|+++.|+-|.|
T Consensus 40 G~~iv~ld~~e~~r---yPdP~q--------~e--fk~~~~d~r-nk~ls~a~~~d------kpLt~dnic~GvGsDE~I 99 (375)
T KOG0633|consen 40 GRDIVKLDANENPR---YPDPEQ--------ME--FKYVYPDPR-NKRLSDALAQD------KPLTSDNICVGVGSDELI 99 (375)
T ss_pred CCCceEeccccCCC---CcCHHH--------cc--cccccCCcc-cchhhhhcccC------CCCCccceEEecCcHHHH
Confidence 77899998887543 445533 21 011355432 34566555533 267899999999999999
Q ss_pred HHHHHHhcCCC-CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEEEcCCCCCcccCC
Q 022213 121 EVILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMVIINPGNPCGNVF 197 (301)
Q Consensus 121 ~~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~ 197 (301)
+.++++.|.|| ++|+...|+|.-|..-+...+++++.+|+.+ +|.++.|.+.+.++. .+|.+|+++|+||||..+
T Consensus 100 D~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~p--dF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~i 177 (375)
T KOG0633|consen 100 DLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNP--DFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSII 177 (375)
T ss_pred HHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCC--CccccHHHHHHHHhccccceEEEEcCCCCCCcccc
Confidence 99999999999 9999999999998877788899999999866 678999999998754 678899999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
..+.+++|.+.-. |.++++||+|.+|...+.+.. ...+..|++++.++||+||++|+|+||-..+.
T Consensus 178 k~~di~KiLe~p~--nglVVvDEAYidFsg~~S~~~---lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~ 243 (375)
T KOG0633|consen 178 KEDDILKILEMPD--NGLVVVDEAYIDFSGVESRMK---LVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPL 243 (375)
T ss_pred cHHHHHHHHhCCC--CcEEEEeeeeEeeccccccch---HhHhCCceeehhhhhhhcCcceeEeecccccH
Confidence 9999999988432 789999999999775433333 33456788999999999999999999998754
No 119
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.91 E-value=2e-22 Score=184.85 Aligned_cols=202 Identities=16% Similarity=0.163 Sum_probs=154.3
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-CCCCCCC-------CCCHHHHHHHHHHHhhhCCCCC-CCCCEEE
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-FNCYATN-------SGIPPARRAIADYLSRDLPYKL-SADDVYV 112 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-~~~Y~~~-------~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~ 112 (301)
.++|.|+.+.-. +.|+.+.+++.+.+.... ...+... ..+.++|+.+++++ +. ++++|++
T Consensus 15 ~~~iyld~a~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~i~~ 83 (398)
T TIGR03392 15 DGTVYLDSAATA-----LKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFL------NAPDAENIVW 83 (398)
T ss_pred CCeEEeeCcccc-----CCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHh------CCCCCCeEEE
Confidence 357899988632 456788898888775321 1112211 12456888999988 34 4689999
Q ss_pred cCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213 113 TLGCKQAVEVILSVL----ARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM 184 (301)
Q Consensus 113 t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 184 (301)
|+|+|++++.++.++ .++||+|++++|.|++ +...++..|++++.++++. ++.+|++.+++.++++++++
T Consensus 84 t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~~i~~~t~lv 161 (398)
T TIGR03392 84 TRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA--DLLPDIRQLPELLTPRTRIL 161 (398)
T ss_pred eCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHHhccCceEE
Confidence 999999999999998 4789999999999875 4456678899999998753 35589999999998889999
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213 185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL 264 (301)
Q Consensus 185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~ 264 (301)
++++|+||||.+++ +++|+++|+++|+++++|++|+...+ ...+..++. .+++.|++|.++.+| +||+
T Consensus 162 ~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~----~~~~~~~~~---d~~~~s~~K~~gp~G--~G~l 229 (398)
T TIGR03392 162 ALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHG----PPDVQALDI---DFYAFSGHKLYGPTG--IGVL 229 (398)
T ss_pred EEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCC----CCChhhcCC---CEEEEecccccCCCc--eEEE
Confidence 99999999999999 78899999999999999999975332 122222222 277889999877666 8999
Q ss_pred EeeC
Q 022213 265 VTND 268 (301)
Q Consensus 265 ~~~~ 268 (301)
+++.
T Consensus 230 ~~~~ 233 (398)
T TIGR03392 230 YGKT 233 (398)
T ss_pred EEcH
Confidence 8753
No 120
>PLN02242 methionine gamma-lyase
Probab=99.90 E-value=7.5e-23 Score=187.58 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=140.8
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH-----HhcCceEEEee
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA-----QRKQVEVRHFD 159 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~-----~~~g~~~~~~~ 159 (301)
...+|++.+|+++ ..+.+++++|+++|+..++.+++++||+|+++.|.|..+...+ +..|+++++++
T Consensus 77 t~~~LE~~lA~l~--------g~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d 148 (418)
T PLN02242 77 TVLNLGRQMAALE--------GTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVD 148 (418)
T ss_pred hHHHHHHHHHHHh--------CCCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcC
Confidence 5678899999987 3467889999999999999999999999999999998876554 34677777665
Q ss_pred cCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213 160 LLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238 (301)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 238 (301)
. .|++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+.. . .+
T Consensus 149 ~-------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~---~---~~ 212 (418)
T PLN02242 149 I-------TDLEAVKKAVVPGKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSP---A---RL 212 (418)
T ss_pred C-------CCHHHHHHhcCcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCH---H---Hc
Confidence 4 388999999987 4899999999999999998 8899999999999999999998765421 1 11
Q ss_pred CCCCCEEEEecCcccCCCCccee-EEEEeeCCCCcccchhHHHHHHhhhc---ccCCCcccccc
Q 022213 239 GSIVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIFQKSGIIDSIKDCLS---IYSDIPTFIQV 298 (301)
Q Consensus 239 ~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~q~ 298 (301)
+..|+++|+||.++++|.++ ||++++. +++.+++.... ...+++...|.
T Consensus 213 ---g~divv~S~SK~l~g~g~~~gG~iv~~~--------~li~~l~~~~~~~~~~~g~~~~~~~ 265 (418)
T PLN02242 213 ---GADVVVHSISKFISGGADIIAGAVCGPA--------ELVNSMMDLHHGALMLLGPTMNPKV 265 (418)
T ss_pred ---CCcEEEEeCccccCCCCCceEEEEEcCH--------HHHHHHHHHhhhhhhccCCCCCHHH
Confidence 23489999999999999884 8888643 46677765532 23344444444
No 121
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.90 E-value=3.4e-22 Score=179.23 Aligned_cols=206 Identities=16% Similarity=0.157 Sum_probs=147.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEE
Q 022213 58 FRTAVEAEDAIVDAVRSGKFNCYA-TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLL 136 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~ 136 (301)
+...+.+.++..+.++ .|+ +..-+.+|++.+|+|+ +.+++++++++|+++++..++.+++++||.|++
T Consensus 32 l~~~~~~~~~~~~~~~-----~~~g~~~~~~~Le~~lA~~~------g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli 100 (346)
T TIGR03576 32 LAGGFKIDEEDLELLE-----TYVGPAIFEEKVQELGREHL------GGPEEKILVFNRTSSAILATILALEPPGRKVVH 100 (346)
T ss_pred CCCChhHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHHc------CCCcceEEEECCHHHHHHHHHHHhCCCCCEEEE
Confidence 4445678888877776 342 1122345555555555 357789999999999999999999999999997
Q ss_pred c---CCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 022213 137 P---RPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR 213 (301)
Q Consensus 137 ~---~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~ 213 (301)
+ .|+|..|...++..|.++... .+++.++. .++++++++ +++|++|.+++.+++++|+++|+++|
T Consensus 101 ~~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~--~~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~ 168 (346)
T TIGR03576 101 YLPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK--IDGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKE 168 (346)
T ss_pred CCCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh--CcCceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcC
Confidence 5 468888888888889875321 24455433 235666666 45799999999999999999999999
Q ss_pred CeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCC
Q 022213 214 VMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDI 292 (301)
Q Consensus 214 ~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 292 (301)
+++|+||+|..+..+.....+...+. .+ +++.|||| +++|+|+||++++. ++++.+++.... ..+.
T Consensus 169 ~~livDEAy~~~~~~~~~~~~~~~~~--~d-ivv~s~SK--alaG~r~G~v~~~~--------~li~~l~~~~~~~~~s~ 235 (346)
T TIGR03576 169 AIVLVDDASGARVRRLYGQPPALDLG--AD-LVVTSTDK--LMDGPRGGLLAGRK--------ELVDKIKSVGEQFGLEA 235 (346)
T ss_pred CEEEEECCccccccccCCCCCHHHcC--Cc-EEEeccch--hccccceEEEEeCH--------HHHHHHHHhhcCcccCc
Confidence 99999999998653211111111222 12 66779999 57999999999843 588888887542 3345
Q ss_pred ccccccc
Q 022213 293 PTFIQVC 299 (301)
Q Consensus 293 ~~~~q~~ 299 (301)
+++.|.+
T Consensus 236 ~~~~~~a 242 (346)
T TIGR03576 236 QAPLLAA 242 (346)
T ss_pred cHHHHHH
Confidence 6666654
No 122
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.90 E-value=6.1e-23 Score=184.05 Aligned_cols=203 Identities=15% Similarity=0.133 Sum_probs=150.2
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEc
Q 022213 58 FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP 137 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~ 137 (301)
+++++.+.+++.+..... ..|++.....++++.+++++ + ++++++++|+++++..++++++++||+|+++
T Consensus 8 ~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~~a~~~------g--~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~ 77 (338)
T cd06502 8 TGPTPEMLEAMAAANVGD--DVYGEDPTTAKLEARAAELF------G--KEAALFVPSGTAANQLALAAHTQPGGSVICH 77 (338)
T ss_pred CCCCHHHHHHHHhcccCC--cccCCCHHHHHHHHHHHHHh------C--CCeEEEecCchHHHHHHHHHhcCCCCeEEEe
Confidence 567788989887755322 25766566778888888887 2 5678888888999999999999999999999
Q ss_pred CCCCcchHH---HHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-------CccEEEEcCCCCCcccCCCHHHHHHHHH
Q 022213 138 RPGWPYYEG---IAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-------NTAAMVIINPGNPCGNVFTYHHLQEIAE 207 (301)
Q Consensus 138 ~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p~nptG~~~~~~~l~~i~~ 207 (301)
.|+|..+.. .....|++++.++.. .+.+|++.+++++++ +++++++++|+|| |.+++.+++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~ 153 (338)
T cd06502 78 ETAHIYTDEAGAPEFLSGVKLLPVPGE---NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISA 153 (338)
T ss_pred cCcceeeecCCcHHHHcCceEEeecCC---CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHH
Confidence 999876432 345579999888763 256999999998864 6788999999997 66779999999999
Q ss_pred HHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 208 MARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 208 ~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
+|+++|+++|+|++|.......... ++..+....+ +++.|+||+|+++| |++++.+ ++++++++...
T Consensus 154 ~~~~~~~~livDea~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~~~~~~---g~~~~~~-------~~~~~~~~~~~ 220 (338)
T cd06502 154 LAKENGLPLHLDGARLANAAAALGV-ALKTYKSGVD-SVSFCLSKGGGAPV---GAVVVGN-------RDFIARARRRR 220 (338)
T ss_pred HHHHcCCeEeechHHHHHHHHhcCC-CHHHHHhcCC-EEEEeccccCCCcc---ceEEECC-------HHHHHHHHHHH
Confidence 9999999999999986432111111 2222222223 45779999999887 5544333 24777776553
No 123
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.90 E-value=3.1e-22 Score=182.55 Aligned_cols=217 Identities=21% Similarity=0.197 Sum_probs=152.7
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
+++++|+|+.|++ +.+.+++.+.+++.+++.... ...|....|...+++.+++.+.+.++ .++.+++++++
T Consensus 37 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~----~~~~i~~~~g~ 109 (385)
T PRK05958 37 DGRRMLNFASNDY---LGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG----AERALLFSSGY 109 (385)
T ss_pred CCceEEEeeCCCc---ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEEECcHH
Confidence 6899999999974 235567889999998886411 11233333444444444444444333 23455555666
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC---ccEEEEcCCCCCcc
Q 022213 118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN---TAAMVIINPGNPCG 194 (301)
Q Consensus 118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~v~l~~p~nptG 194 (301)
+++..+++.++++||.|+++.|+|..+...++..|.+++.++. .|++.+++.++.. +.++++.+++|++|
T Consensus 110 ~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G 182 (385)
T PRK05958 110 AANLAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVTESVFSMDG 182 (385)
T ss_pred HHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEEEecccCCC
Confidence 7777788888999999999999999998888888988887764 4788888887642 44455567899999
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccC--CCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCc
Q 022213 195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG--SIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGI 272 (301)
Q Consensus 195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~--~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~ 272 (301)
...+ +++|+++|++||+++|+||+|....++ +........+....++|++.|+||+++.+| ||++++.
T Consensus 183 ~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G---g~~~~~~---- 252 (385)
T PRK05958 183 DLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG---AAVLGSE---- 252 (385)
T ss_pred CcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC---cEEEcCH----
Confidence 9888 888999999999999999999865543 211211112333457899999999998877 8987642
Q ss_pred ccchhHHHHHHh
Q 022213 273 FQKSGIIDSIKD 284 (301)
Q Consensus 273 ~~~~~~~~~~~~ 284 (301)
++++.++.
T Consensus 253 ----~~~~~~~~ 260 (385)
T PRK05958 253 ----TLIDYLIN 260 (385)
T ss_pred ----HHHHHHHH
Confidence 36666543
No 124
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.90 E-value=1.5e-22 Score=185.12 Aligned_cols=169 Identities=20% Similarity=0.231 Sum_probs=137.3
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEE
Q 022213 82 TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRH 157 (301)
Q Consensus 82 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~ 157 (301)
+..+..+|++++|+++. .+++++++|++.|+..++.+++++||+|+++.|.|..+.. .++..|+++++
T Consensus 62 ~~p~~~~Le~~iA~~~g--------~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 133 (400)
T PRK06234 62 GNPTSTEVENKLALLEG--------GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTF 133 (400)
T ss_pred CCccHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEE
Confidence 33578999999999982 3478999999999999999999999999999999986543 34668999988
Q ss_pred eecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC--CCeEEEccCCcccccCCCCCCCc
Q 022213 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSIPYTPM 235 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~~~~~~ 235 (301)
++. .|++++++.++++++++++++|+||||.+.+ +++|+++|+++ ++++|+|++|....+.. ++
T Consensus 134 vd~-------~d~e~l~~~i~~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~~----~l 199 (400)
T PRK06234 134 VDT-------SNLEEVRNALKANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQR----PL 199 (400)
T ss_pred ECC-------CCHHHHHHHhccCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcCC----ch
Confidence 875 3789999999888999999999999999999 88888888886 99999999998765431 12
Q ss_pred cccCCCCCEEEEecCcccCCCCccee-EEEEeeCCCCcccchhHHHHHHh
Q 022213 236 GLFGSIVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 236 ~~~~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
. ++ ..|++.|+||.++++|.|+ ||++++. +++++++.
T Consensus 200 ~-~g---~Divv~S~sK~l~g~g~~~gG~v~~~~--------~~~~~l~~ 237 (400)
T PRK06234 200 Q-LG---ADVVVHSATKYLNGHGDVIAGFVVGKE--------EFINQVKL 237 (400)
T ss_pred h-hC---CcEEEeeccccccCCCCceeEEEEecH--------HHHHHHHH
Confidence 1 11 2399999999999999876 9988743 36666654
No 125
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.90 E-value=6.8e-22 Score=181.51 Aligned_cols=201 Identities=17% Similarity=0.168 Sum_probs=154.2
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC---------CCCCHHHHHHHHHHHhhhCCCCC-CCCCEE
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT---------NSGIPPARRAIADYLSRDLPYKL-SADDVY 111 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---------~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~ 111 (301)
.+.+.|+.+.-. +.|..+.+++.+.+..... +... ...+.++|+.+++++ +. ++++|+
T Consensus 18 ~~~~yld~a~~~-----~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~i~ 85 (401)
T PRK10874 18 DAGVYLDSAATA-----LKPQAVIEATQQFYSLSAG-NVHRSQFAAAQRLTARYEAAREQVAQLL------NAPDAKNIV 85 (401)
T ss_pred CceEEEeCCccc-----CCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHHHHHHHHc------CCCCCCEEE
Confidence 357889888632 4567888988887763210 1100 112557888888887 34 678999
Q ss_pred EcCCHHHHHHHHHHHhc----CCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213 112 VTLGCKQAVEVILSVLA----RPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA 183 (301)
Q Consensus 112 ~t~g~~~al~~~~~~l~----~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (301)
+|+|++++++.+++++. ++||+|+++++.|++ +...++..|++++.++... ++.+|++++++.+++++++
T Consensus 86 ~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~l 163 (401)
T PRK10874 86 WTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA--DRLPDVDLLPELITPRTRI 163 (401)
T ss_pred EECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC--CCcCCHHHHHHhcCcCcEE
Confidence 99999999999999983 689999999999865 4556678899999998743 4568999999999889999
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213 184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW 263 (301)
Q Consensus 184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~ 263 (301)
+++++|+||||.+++ +++|+++|+++|+++|+|++|+...+ +..+..++ -.+++.|++|.|+.+| +||
T Consensus 164 v~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~----~~~~~~~~---~d~~~~s~~K~~gp~G--~G~ 231 (401)
T PRK10874 164 LALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHF----PADVQALD---IDFYAFSGHKLYGPTG--IGV 231 (401)
T ss_pred EEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCcccccc----cCCchhcC---CCEEEEecccccCCCc--cEE
Confidence 999999999999999 78888999999999999999975332 12222222 2378899999887677 688
Q ss_pred EEeeC
Q 022213 264 LVTND 268 (301)
Q Consensus 264 ~~~~~ 268 (301)
++++.
T Consensus 232 l~~~~ 236 (401)
T PRK10874 232 LYGKS 236 (401)
T ss_pred EEEch
Confidence 88743
No 126
>PLN02822 serine palmitoyltransferase
Probab=99.90 E-value=1.5e-22 Score=188.94 Aligned_cols=222 Identities=14% Similarity=0.143 Sum_probs=161.1
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF------NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT 113 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t 113 (301)
+++++|||+.+++ +.+..++.+.+++.++++.... ..|++..++.+|++++++++. .++.|+++
T Consensus 107 ~G~~~id~~s~~~---lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~~i~~s 176 (481)
T PLN02822 107 NGKDVVNFASANY---LGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPDSILYS 176 (481)
T ss_pred CCceEEEeECCCc---CCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCCEEEEC
Confidence 4788999999985 3566789999999999975211 135565668899999999983 34678888
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc--ccCc-cEEEEcCCC
Q 022213 114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA--DKNT-AAMVIINPG 190 (301)
Q Consensus 114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~-~~v~l~~p~ 190 (301)
+|.+ ++..++.+++++||.|++....|..+...+...+.+++.++.+..+.+..++++++... .+++ +++++..++
T Consensus 177 ~G~~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~ 255 (481)
T PLN02822 177 YGLS-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIY 255 (481)
T ss_pred CHHH-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCC
Confidence 8877 67889999999999999988877777677778888888887643222222233332221 1234 577777889
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC--CCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG--SIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~--~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
|++|.+.+ +++|+++|++||+++|+||+|+...++.........++ .....|++.||||+++++| ||++++.
T Consensus 256 ~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G~i~g~~ 329 (481)
T PLN02822 256 QNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---GFCTGSA 329 (481)
T ss_pred CCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---eEEEcCH
Confidence 99999999 88899999999999999999997776522111111111 1234589999999999999 9998743
Q ss_pred CCCcccchhHHHHHHhhh
Q 022213 269 PNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~ 286 (301)
++++.++...
T Consensus 330 --------~ii~~~~~~~ 339 (481)
T PLN02822 330 --------RVVDHQRLSS 339 (481)
T ss_pred --------HHHHHHHhcC
Confidence 4777776543
No 127
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.90 E-value=8.2e-22 Score=181.24 Aligned_cols=203 Identities=18% Similarity=0.237 Sum_probs=153.0
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC----CCCC----CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN----CYAT----NSGIPPARRAIADYLSRDLPYKLSADDVYVT 113 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~----~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t 113 (301)
.++|.|+.+.- -++|+.+.+++.+.+...... .|.. ..-..++|+.+++++.. .++++|++|
T Consensus 22 ~~~iYld~a~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-----~~~~~v~~t 91 (406)
T PRK09295 22 LPLAYLDSAAS-----AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINA-----RSAEELVFV 91 (406)
T ss_pred CceEEEeCccc-----ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCc-----CCCCeEEEe
Confidence 36789988863 245678889888877531110 1100 01145788888888732 256899999
Q ss_pred CCHHHHHHHHHHHh----cCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEE
Q 022213 114 LGCKQAVEVILSVL----ARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMV 185 (301)
Q Consensus 114 ~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 185 (301)
+|+++++..+++++ +++||+|+++++.|++ +...++..|++++.++++. ++.+|++.+++++++++++++
T Consensus 92 ~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~ 169 (406)
T PRK09295 92 RGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPALFDERTRLLA 169 (406)
T ss_pred CCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCCCHHHHHHhcCCCcEEEE
Confidence 99999999999874 5789999999988864 3455667899999998753 345899999999988899999
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEE
Q 022213 186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265 (301)
Q Consensus 186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~ 265 (301)
+++|+||||.+++ +++|+++|+++|+++++|++|+... .+..+..++. -+++.|++|.+|.+| +||++
T Consensus 170 l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~----~~~~~~~~~~---D~~~~s~~K~~gp~G--~G~l~ 237 (406)
T PRK09295 170 ITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMH----HPVDVQALDC---DFYVFSGHKLYGPTG--IGILY 237 (406)
T ss_pred EecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCc----cccCchhcCC---CEEEeehhhccCCCC--cEEEE
Confidence 9999999999999 7888999999999999999997632 2223333322 288899999877666 89998
Q ss_pred eeC
Q 022213 266 TND 268 (301)
Q Consensus 266 ~~~ 268 (301)
+++
T Consensus 238 ~~~ 240 (406)
T PRK09295 238 VKE 240 (406)
T ss_pred Ech
Confidence 854
No 128
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.89 E-value=8e-22 Score=179.08 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=138.2
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERN 165 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~ 165 (301)
...+++.+|+|+ ..+.+++++|+++++..++.+++++||.|+++.+.|.+....++..|++++.++.+.+.+
T Consensus 53 ~~~~~e~lA~~~--------g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~ 124 (370)
T TIGR02539 53 IHDFLEDLAEFL--------GMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPE 124 (370)
T ss_pred HHHHHHHHHHHh--------CCCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCccc
Confidence 357788888887 234677899999999999999999999999998887666577788999999999765556
Q ss_pred CCCCHHHHHhhccc-------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213 166 WEVDLDAVEALADK-------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238 (301)
Q Consensus 166 ~~~~~~~l~~~~~~-------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 238 (301)
+.+|++.+++.+++ +++++++++|+||||...+ +++|+++|+++|+++|+|++|..... ......+
T Consensus 125 ~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~----~~~~~~~ 197 (370)
T TIGR02539 125 YKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRM----PVSAKEI 197 (370)
T ss_pred CCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCc----CCCHHHc
Confidence 78999999998753 5678999999999999998 78888899999999999999997321 1111122
Q ss_pred CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 239 GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
+ ..++++|+||+++ +|.|+||++++. ++++.++...
T Consensus 198 ~---~di~v~s~sK~~~-~~g~~G~l~~~~--------~~i~~l~~~~ 233 (370)
T TIGR02539 198 G---ADFIVGSGHKSMA-ASGPCGVLGMSE--------EWEDIVLRKS 233 (370)
T ss_pred C---CCEEEeeCccccc-CCCCEEEEEECH--------HHHhhhcccc
Confidence 1 2377799999987 567899999853 4777776654
No 129
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.89 E-value=2.6e-22 Score=183.93 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=167.0
Q ss_pred cCCCCCeeeccCCCCCCCCCCCC-hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRT-AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
..++..+|+|..|.+.. .++. .+.+.+++.++++... +....+..++++++++++.+.. ..+++++|+|+
T Consensus 35 d~dg~~~iD~~~g~~~~--~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~----~~~~v~~~~gg 105 (396)
T PRK02627 35 DDDGKEYLDFLAGIAVN--NLGHCHPKLVEAIQEQAAKLI---HTSNLYYIEPQEELAEKLVELS----GMDKVFFCNSG 105 (396)
T ss_pred eCCCCEEEECCccHHhc--cCCCCCHHHHHHHHHHHhhcc---ccccccCCHHHHHHHHHHHhhc----CCCEEEECCCc
Confidence 34688899999986542 2343 4788899988886432 1111234678888999887753 34799999999
Q ss_pred HHHHHHHHHHhcCCC-------CEEEEcCCCCcchHHHHHhcCceEE-EeecCC-CCCC----CCCHHHHHhhcccCccE
Q 022213 117 KQAVEVILSVLARPG-------ANVLLPRPGWPYYEGIAQRKQVEVR-HFDLLP-ERNW----EVDLDAVEALADKNTAA 183 (301)
Q Consensus 117 ~~al~~~~~~l~~~g-------d~Vl~~~p~~~~~~~~~~~~g~~~~-~~~~~~-~~~~----~~~~~~l~~~~~~~~~~ 183 (301)
++|++.+++.+...+ ++|++..++|+++.......+.... .....+ ..++ ..|++.+++.+.+++++
T Consensus 106 ~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~ 185 (396)
T PRK02627 106 AEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAA 185 (396)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEE
Confidence 999999999776433 6799999999987554443332211 000000 1111 12889999999878888
Q ss_pred EEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeE
Q 022213 184 MVIINPGNPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFG 262 (301)
Q Consensus 184 v~l~~p~nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG 262 (301)
+++..++||+| .+++.+.+++|.++|++||+++|+||+|.++.+.+. ..+...++...+++ +|||.++ +|+|+|
T Consensus 186 vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~-~~~~~~~~~~pdi~---t~sK~~~-~G~rig 260 (396)
T PRK02627 186 VMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYGIEPDIM---TLAKGLG-GGVPIG 260 (396)
T ss_pred EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc-eeeehhcCCCCCEE---EEcchhh-CCcccE
Confidence 88888899999 688999999999999999999999999998766543 22222232223333 7999988 999999
Q ss_pred EEEeeCCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213 263 WLVTNDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC 299 (301)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~ 299 (301)
|++++. ++++.+.... ....+.+++.|.+
T Consensus 261 ~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~~a 290 (396)
T PRK02627 261 AVLAKE--------KVADVFTPGDHGSTFGGNPLACAA 290 (396)
T ss_pred EEEEcH--------HHHhccCCCCCCCCCCCCHHHHHH
Confidence 999853 3666665432 2233566677665
No 130
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.89 E-value=1.3e-21 Score=178.80 Aligned_cols=204 Identities=16% Similarity=0.144 Sum_probs=153.8
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCC--CCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----FNC--YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----~~~--Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
...|||.--.- --|+++.+.+++.+...... .+. +.....+.++|+.+|+++ ..+++++++
T Consensus 18 ~~~~~~~~~~~----~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~--------g~~~~~~~~ 85 (387)
T PRK09331 18 EEFINLDPIQR----GGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL--------GMDEARVTH 85 (387)
T ss_pred ccccccChhhc----CCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh--------CCCcEEEeC
Confidence 45666643221 13566788898888764311 001 111224688999999998 235788999
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-------CccEEEEc
Q 022213 115 GCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-------NTAAMVII 187 (301)
Q Consensus 115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~ 187 (301)
|+++++..++.+++++||+|+++.++|.+....++..|++++.++...+.++.+|++.+++.+++ ++++|+++
T Consensus 86 g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~ 165 (387)
T PRK09331 86 GAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLT 165 (387)
T ss_pred CHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEE
Confidence 99999999999999999999999999988777788899999999874334567999999998753 57889999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213 188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+|+|+||...+ +++|+++|+++|+++++|++|+.-. .+.....++. .+++.|++|++++ +.|+||++++
T Consensus 166 ~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~g~----~~~~~~~~g~---D~~~~s~~K~l~~-~~~~G~l~~~ 234 (387)
T PRK09331 166 HVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTVGR----MPVDGKKLGA---DFIVGSGHKSMAA-SAPSGVLATT 234 (387)
T ss_pred CCCCCCccccc---HHHHHHHHHHcCCEEEEECCcccCC----cCCCHHHcCC---CEEEeeCcccccC-CCCEEEEEEC
Confidence 99999999988 8899999999999999999998522 1222222222 2889999999764 4589999874
Q ss_pred C
Q 022213 268 D 268 (301)
Q Consensus 268 ~ 268 (301)
.
T Consensus 235 ~ 235 (387)
T PRK09331 235 E 235 (387)
T ss_pred H
Confidence 3
No 131
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.89 E-value=7.3e-22 Score=179.40 Aligned_cols=186 Identities=17% Similarity=0.203 Sum_probs=141.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcC
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQ 152 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g 152 (301)
+..|+.+ ....|++.++++. ..+++++++|+++|+..++++++++||+|+++.|+|.+....+ ...+
T Consensus 45 Y~R~~~p-~~~~le~~lA~l~--------g~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~ 115 (382)
T TIGR02080 45 YSRSGNP-TRDLLQQALAELE--------GGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC 115 (382)
T ss_pred ccCCCCc-hHHHHHHHHHHHh--------CCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC
Confidence 4456553 4678999999987 2468999999999999999999999999999999998654433 2234
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~ 232 (301)
+++..++. .|++.++++++++++++++++|+||||.+++ +++|+++|+++|+++|+|++|.......
T Consensus 116 ~~v~~~d~-------~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~--- 182 (382)
T TIGR02080 116 FRVLFVDQ-------GDEQALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQN--- 182 (382)
T ss_pred eEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence 55555431 4789999999888999999999999999999 7788888999999999999998654321
Q ss_pred CCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCcccc
Q 022213 233 TPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFI 296 (301)
Q Consensus 233 ~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 296 (301)
++. +.. .++++|+||.++. +|++.|++++.++ +++++++..... ..+.+++.
T Consensus 183 -pl~-~ga---Divv~S~sK~l~G~~~~~~G~i~~~~~-------~~~~~l~~~~~~~g~~~sp~~ 236 (382)
T TIGR02080 183 -PLA-LGA---DLVLHSCTKYLNGHSDVIAGAVIAKDP-------QVAEELAWWANNLGVTGGAFD 236 (382)
T ss_pred -chh-hCC---CEEEeecceeccCCCCceeEEEEeCCH-------HHHHHHHHHHHccCCCCCHHH
Confidence 221 111 2889999999864 7899999987553 466777655442 44444443
No 132
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.89 E-value=2.8e-21 Score=178.62 Aligned_cols=203 Identities=17% Similarity=0.242 Sum_probs=153.0
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC-----CCCCC---CCCCHHHHHHHHHHHhhhCCCCCC-CCCEE
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF-----NCYAT---NSGIPPARRAIADYLSRDLPYKLS-ADDVY 111 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~-----~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~ 111 (301)
+.+++.|+.+.+. ++|+.+.+++.+.+..... ..|.. ...+.++|+.+++++ +.+ +++|+
T Consensus 30 ~~~~iyLd~a~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~v~ 98 (424)
T PLN02855 30 GSKLVYLDNAATS-----QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFI------NASTSREIV 98 (424)
T ss_pred CCCeEEeeCcccc-----CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHc------CCCCCCEEE
Confidence 3568999998753 4567888888877653211 01111 112458888999988 333 57999
Q ss_pred EcCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213 112 VTLGCKQAVEVILSVL----ARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA 183 (301)
Q Consensus 112 ~t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (301)
+|+|+|+++..+++++ +++||+|+++.+.|++ +...++..|.+++.++++.+ ..++++.+++.+++++++
T Consensus 99 ~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~--~~~~~~~l~~~i~~~t~l 176 (424)
T PLN02855 99 FTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPD--EVLDVEQLKELLSEKTKL 176 (424)
T ss_pred EeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCC--CCcCHHHHHHHhccCceE
Confidence 9999999999999864 5789999999998874 34455678999999987543 348999999999888999
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213 184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW 263 (301)
Q Consensus 184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~ 263 (301)
+++++|+||||.+++ +++|+++|+++|+++|+|++|.. +..+..+..++. .+++.|++|.+|.+| +||
T Consensus 177 v~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~----g~~~~~~~~~~~---d~~~~s~~K~~gp~G--~G~ 244 (424)
T PLN02855 177 VATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSV----PHMPVDVQTLGA---DFLVASSHKMCGPTG--IGF 244 (424)
T ss_pred EEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhc----CCcCCCchhcCC---CEEEeecccccCCCc--cEE
Confidence 999999999999999 77888999999999999999964 222222333322 278999999766555 899
Q ss_pred EEeeC
Q 022213 264 LVTND 268 (301)
Q Consensus 264 ~~~~~ 268 (301)
++++.
T Consensus 245 l~~~~ 249 (424)
T PLN02855 245 LWGKS 249 (424)
T ss_pred EEEch
Confidence 98854
No 133
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.89 E-value=3.4e-21 Score=176.97 Aligned_cols=203 Identities=17% Similarity=0.247 Sum_probs=154.6
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC--C--CCC----CCCCCHHHHHHHHHHHhhhCCCCCC-CCCEE
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF--N--CYA----TNSGIPPARRAIADYLSRDLPYKLS-ADDVY 111 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~--~--~Y~----~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~ 111 (301)
+.+++.|++|... ++|..+.+++.+.+..... . .+. ....+.++|+.+++++ +.+ +++|+
T Consensus 16 ~~~~~yld~~~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~------~~~~~~~v~ 84 (403)
T TIGR01979 16 GKPLVYLDSAATS-----QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFI------NAASDEEIV 84 (403)
T ss_pred CCceEEEeCcccc-----CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHh------CcCCCCeEE
Confidence 5678999999753 4567788888777653210 0 010 0113558889999988 344 67999
Q ss_pred EcCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcch----HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213 112 VTLGCKQAVEVILSVL----ARPGANVLLPRPGWPYY----EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA 183 (301)
Q Consensus 112 ~t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (301)
+|+|+++++..++.++ .++||+|+++++.|++. ...++..|.+++.++++ .++.++++.+++.+++++++
T Consensus 85 ~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~i~~~~~l 162 (403)
T TIGR01979 85 FTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD--DDGTLDLDDLEKLLTEKTKL 162 (403)
T ss_pred EeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC--CCCCCCHHHHHHHhccCCeE
Confidence 9999999999999875 47899999999988753 34556789999999875 34558999999999889999
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213 184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW 263 (301)
Q Consensus 184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~ 263 (301)
+++++|+||||..++ +++|+++|+++|+++|+|++|+... .+..+..+. ..+++.|++|.+|.+| +|+
T Consensus 163 v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~----~~~~~~~~~---~d~~~~s~~K~~gp~G--~g~ 230 (403)
T TIGR01979 163 VAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPH----MPVDVQALD---CDFYVFSGHKMYGPTG--IGV 230 (403)
T ss_pred EEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCc----cccCccccC---CCEEEEecccccCCCC--ceE
Confidence 999999999999999 8888999999999999999997532 222232222 3388999999887666 889
Q ss_pred EEeeC
Q 022213 264 LVTND 268 (301)
Q Consensus 264 ~~~~~ 268 (301)
++++.
T Consensus 231 l~~~~ 235 (403)
T TIGR01979 231 LYGKE 235 (403)
T ss_pred EEEch
Confidence 88753
No 134
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.88 E-value=2.1e-21 Score=177.97 Aligned_cols=200 Identities=20% Similarity=0.206 Sum_probs=150.8
Q ss_pred eeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC---CCCCCCCCC----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 44 VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK---FNCYATNSG----IPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 44 ~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
++.|+.+-+. ++|+.+.+++.+.+.... ...|....+ ..++|+.+++++ +.++++|++++|+
T Consensus 18 ~~yl~~~~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~------~~~~~~v~~~~~~ 86 (397)
T TIGR01976 18 RVFFDNPAGT-----QIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLL------NADPPEVVFGANA 86 (397)
T ss_pred eEEecCCccC-----CCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHc------CCCCCeEEEeCCH
Confidence 6899888753 456788898888775321 123543323 357778888877 3455679999999
Q ss_pred HHHHHHHHHHh---cCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCC
Q 022213 117 KQAVEVILSVL---ARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP 189 (301)
Q Consensus 117 ~~al~~~~~~l---~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 189 (301)
++++..++.++ .++||+|+++.+.|.+.. ..++..|.++..++++.+ ++.++++.+++.++++++++++++|
T Consensus 87 t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~i~~~~~lv~i~~~ 165 (397)
T TIGR01976 87 TSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA-TGELHPDDLASLLSPRTRLVAVTAA 165 (397)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-CCCcCHHHHHHhcCCCceEEEEeCC
Confidence 99998888776 579999999999987542 455778999999987542 3568999999999888999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+||||..++ +++|+++|+++|+++|+|+++.. +.....+..++ ..+++.|++|.+ |.|+||+++++
T Consensus 166 ~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~----~~~~~~~~~~~---~d~~~~s~~K~~---g~~~G~l~~~~ 231 (397)
T TIGR01976 166 SNTLGSIVD---LAAITELVHAAGALVVVDAVHYA----PHGLIDVQATG---ADFLTCSAYKFF---GPHMGILWGRP 231 (397)
T ss_pred CCCCCccCC---HHHHHHHHHHcCCEEEEehhhhc----cccCCCHHHcC---CCEEEEechhhc---CCceEEEEEcH
Confidence 999999998 88889999999999999999753 22222222222 226678999986 45799998854
No 135
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.88 E-value=1.7e-21 Score=177.05 Aligned_cols=188 Identities=18% Similarity=0.238 Sum_probs=141.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----hcC
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ----RKQ 152 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g 152 (301)
+.+|+.+ ....|++++|++.. .+++++++|+++++..++.+++++||+|++++|.|.+....+. ..+
T Consensus 46 Y~R~~~p-t~~~L~~~lA~l~g--------~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~g 116 (386)
T PRK08045 46 YSRRGNP-TRDVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_pred eeCCCCc-cHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCC
Confidence 4456654 46789999999872 3479999999999999999999999999999999986433322 234
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~ 232 (301)
+++..++ ..|++.+++.++++++++++++|+||||.+++ +++|.++|+++|+++|+|++|......
T Consensus 117 i~v~~vd-------~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~---- 182 (386)
T PRK08045 117 YRVLFVD-------QGDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPALQ---- 182 (386)
T ss_pred eEEEEeC-------CCCHHHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC----
Confidence 5665553 15889999999888999999999999999999 778888888999999999999875432
Q ss_pred CCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213 233 TPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV 298 (301)
Q Consensus 233 ~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~ 298 (301)
.++. +..+ ++++|+||.++. ++.+.|++++.++ +++++++.... ...+.+++.+.
T Consensus 183 ~pl~-~gaD---ivv~S~tK~l~G~~d~~~G~vi~~~~-------~~~~~l~~~~~~~g~~~~p~~~~ 239 (386)
T PRK08045 183 NPLA-LGAD---LVLHSCTKYLNGHSDVVAGVVIAKDP-------DVVTELAWWANNIGVTGGAFDSY 239 (386)
T ss_pred Cchh-hCCC---EEEeecceeccCCCCceeEEEEeCcH-------HHHHHHHHHHHhcCCCCCHHHHH
Confidence 2222 2222 899999999864 6788999987543 46666664433 34456666554
No 136
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.88 E-value=8.2e-22 Score=179.61 Aligned_cols=238 Identities=13% Similarity=0.115 Sum_probs=158.4
Q ss_pred CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF--NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
.++..+|+|..|.+..+-. ..++.+.+++.+++..... ..|. .+.++++++.+.+.++ .+++++++|+
T Consensus 24 ~~g~~~id~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~la~~~g----~~~~~~~~sg 93 (379)
T TIGR00707 24 VNGKEYLDFVAGIAVNSLG-HAHPKLVEALKEQLEKLVHVSNLYY-----TEPQEELAEKLVEHSG----ADRVFFCNSG 93 (379)
T ss_pred CCCCEEEEcCcchhhccCC-CCCHHHHHHHHHHHhhccccccccC-----CHHHHHHHHHHHhhCC----CCEEEEeCCc
Confidence 4578899999974322111 2447888988888874321 1232 2344444444444333 3599999999
Q ss_pred HHHHHHHHHHhc---C----CCCEEEEcCCCCcchHHHHHhcCceEEE----eecCCCCCCC--CCHHHHHhhcccCccE
Q 022213 117 KQAVEVILSVLA---R----PGANVLLPRPGWPYYEGIAQRKQVEVRH----FDLLPERNWE--VDLDAVEALADKNTAA 183 (301)
Q Consensus 117 ~~al~~~~~~l~---~----~gd~Vl~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~~~~--~~~~~l~~~~~~~~~~ 183 (301)
++++..+++.+. . +||+|++++|+|+++.......+..... .++..+..+. .|++.+++.+++++++
T Consensus 94 ~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 173 (379)
T TIGR00707 94 AEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAA 173 (379)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeE
Confidence 999999998662 2 3799999999999876555554433221 1221111111 1789999988777888
Q ss_pred EEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeE
Q 022213 184 MVIINPGNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFG 262 (301)
Q Consensus 184 v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG 262 (301)
++++.++|++|.. ++.+++++|.++|+++++++|+||+|.++.+.+. ..++.......+++ +|||.++ +|+|+|
T Consensus 174 v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~-~~~~~~~~~~~d~~---t~sK~~~-~G~riG 248 (379)
T TIGR00707 174 VIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHYGIEPDII---TLAKGLG-GGVPIG 248 (379)
T ss_pred EEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhhHHhcCCCCCEE---EEccccc-CCcccE
Confidence 8886566677764 6899999999999999999999999998766443 22222222223443 6899988 999999
Q ss_pred EEEeeCCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213 263 WLVTNDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC 299 (301)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~ 299 (301)
|++++. ++++.++... ....+.++++|.+
T Consensus 249 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a 278 (379)
T TIGR00707 249 ATLAKE--------EVAEAFTPGDHGSTFGGNPLACAA 278 (379)
T ss_pred EEEEcH--------HHHhhhcCCCCCCCCCCCHHHHHH
Confidence 999843 4777776532 2233466777765
No 137
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.88 E-value=1.7e-21 Score=177.83 Aligned_cols=180 Identities=16% Similarity=0.211 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~ 160 (301)
...+|++.+|+++ ..++.++++++++|+..++.+++++||+|+++.|.|.+... .+...|+++.+++.
T Consensus 65 ~~~~le~~lA~l~--------g~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 136 (398)
T PRK08249 65 TVQAFEEKVRILE--------GAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET 136 (398)
T ss_pred HHHHHHHHHHHHh--------CCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC
Confidence 4678999999998 23567888888999999999999999999999999987533 34567888877653
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
.|++.+++++++++++|++++|+||||.+++ +++|+++|+++|+++|+|++|....... ++. +..
T Consensus 137 -------~d~e~l~~~i~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~----~l~-~~~ 201 (398)
T PRK08249 137 -------GDHEQIEAEIAKGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN----PLA-LGA 201 (398)
T ss_pred -------CCHHHHHHhcCCCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC----chh-hCC
Confidence 5899999999888999999999999999999 7788888999999999999999654321 121 122
Q ss_pred CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCccccc
Q 022213 241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQ 297 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q 297 (301)
+ ++++|+||.++.+|.++|++++.+ ++++++++..... ..+.+.+.+
T Consensus 202 D---ivv~S~sK~l~g~~~~~gG~vv~~-------~~l~~~l~~~~~~~g~~~s~~~a 249 (398)
T PRK08249 202 D---LVIHSATKFLSGHADALGGVVCGS-------KELMEQVYHYREINGATMDPMSA 249 (398)
T ss_pred C---EEeccCceecCCCCCceEEEEECC-------HHHHHHHHHHHHhcCCCCCHHHH
Confidence 2 788999999988888875544433 2477777665542 334444433
No 138
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.88 E-value=3.5e-21 Score=175.60 Aligned_cols=158 Identities=22% Similarity=0.282 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~ 160 (301)
...+|++.+++++ ..+++++++|+++|+..++.+++++||+|+++.+.|.+.. ..+...|+++++++.
T Consensus 62 ~~~~le~~la~l~--------g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 62 TVTMFQERLAALE--------GAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred HHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 3578889999887 3457899999999999999999999999999999987643 345678999998875
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
.|++.+++.+++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+.. ++ .++.
T Consensus 134 -------~d~~~l~~~i~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~----pl-~~g~ 198 (390)
T PRK08133 134 -------TDLDAWRAAVRPNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ----PL-KLGA 198 (390)
T ss_pred -------CCHHHHHHhcCcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hhCC
Confidence 2788999999889999999999999999998 8899999999999999999997644321 11 1111
Q ss_pred CCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 241 IVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
.+++.|+||.++.+|.++|++++.+
T Consensus 199 ---Divv~S~sK~~~g~g~~~GG~vv~~ 223 (390)
T PRK08133 199 ---DVVIHSATKYLDGQGRVLGGAVVGS 223 (390)
T ss_pred ---cEEEeecceeecCCcceEeEEEEcC
Confidence 2889999999999999996555433
No 139
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.88 E-value=4.2e-21 Score=175.45 Aligned_cols=194 Identities=22% Similarity=0.254 Sum_probs=141.9
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV 122 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~ 122 (301)
+.|.++.+-. ++.++.+.+..........+..|+.+ ....|++.+|+++. .+..+++++++.++..
T Consensus 30 ~pi~~~~~~~-----~~~~~~~~~~~~~~~~~~~y~r~~~p-~~~~Le~~lA~l~G--------~~~~~~~~sG~~Ai~~ 95 (398)
T PRK07504 30 EALFLTQGFV-----YDTAEAAEARFKGEDPGFIYSRYSNP-TVDMFEKRMCALEG--------AEDARATASGMAAVTA 95 (398)
T ss_pred CCeECCCCcc-----CCCHHHHHHHhccCcCCceeecCCCc-hHHHHHHHHHHHhC--------CCeeeEecCHHHHHHH
Confidence 4577777752 34444444322111011123345443 46889999999972 2344567788999988
Q ss_pred HHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213 123 ILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 123 ~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~ 198 (301)
++.+++++||+|+++.+.|.++... +...|+++..++. .|++.+++++++++++|++++|+||||.+.+
T Consensus 96 ~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~-------~d~e~l~~ai~~~tklV~lesp~NptG~v~d 168 (398)
T PRK07504 96 AILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG-------LDLDNWEKAVRPNTKVFFLESPTNPTLEVID 168 (398)
T ss_pred HHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCcEecC
Confidence 8888899999999999999975433 3456888887752 6899999999889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+++|.++|+++|+++|+|++|....+. . ++ .++ ..+++.|+||.++++|.|+|++++.+
T Consensus 169 ---l~~I~~la~~~gi~lvvD~a~a~~~~~--~--~~-~~g---aDivv~S~sK~l~g~g~~~GG~vv~~ 227 (398)
T PRK07504 169 ---IAAVAKIANQAGAKLVVDNVFATPLFQ--K--PL-ELG---AHIVVYSATKHIDGQGRCLGGVVLSD 227 (398)
T ss_pred ---HHHHHHHHHHcCCEEEEECCccccccC--C--ch-hhC---CCEEEeeccccccCCccceEEEEEeC
Confidence 888888899999999999999865432 1 11 122 23889999999999999997655544
No 140
>PLN02721 threonine aldolase
Probab=99.88 E-value=1.5e-21 Score=176.06 Aligned_cols=216 Identities=16% Similarity=0.124 Sum_probs=148.7
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE 121 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~ 121 (301)
+.+++|+.+.|. . +++.+.+++.+.........|.+ ...+||++++++++. +.+++++++++++.
T Consensus 5 ~~~~~~~~~~~~----~-~~~~~~~a~~~~~~~~~~~~~~~--~~~~l~~~la~~~~~--------~~~~~~~~Gs~a~~ 69 (353)
T PLN02721 5 SRVVDLRSDTVT----K-PTDAMRAAMANAEVDDDVLGYDP--TALRLEEEMAKIFGK--------EAALFVPSGTMGNL 69 (353)
T ss_pred hhhhhhhccccc----C-CCHHHHHHHHhccCCCcccCCCH--HHHHHHHHHHHHhCC--------ceeEEecCccHHHH
Confidence 568899999874 3 34677777765311122223333 368999999999932 33566666677777
Q ss_pred HHHHHhcC-CCCEEEEcCCCCcchHH---HHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-------cCccEEEEcCC-
Q 022213 122 VILSVLAR-PGANVLLPRPGWPYYEG---IAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-------KNTAAMVIINP- 189 (301)
Q Consensus 122 ~~~~~l~~-~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~v~l~~p- 189 (301)
.++.++++ +||+|++++|+|..... .+...|.+++.++.+ ..+.+|++.+++.++ +++++++++++
T Consensus 70 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~ 147 (353)
T PLN02721 70 ISVLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTH 147 (353)
T ss_pred HHHHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccc
Confidence 88888787 99999999999865443 567789999988764 345689999999887 46788888775
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
+||||.+++.+++++|+++|+++|+++|+|++|.......... +...+..... .++.|+||+++++ +||++..+
T Consensus 148 ~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~l~~~---~G~~~~~~- 221 (353)
T PLN02721 148 ANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGV-PVHRLVKAAD-SVSVCLSKGLGAP---VGSVIVGS- 221 (353)
T ss_pred cccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCC-CHHHHhhhCC-EEEEecccccCCc---eeeEEecC-
Confidence 7899999999999999999999999999999986422110001 1111111112 4455899997643 67744333
Q ss_pred CCcccchhHHHHHHhhh
Q 022213 270 NGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 270 ~~~~~~~~~~~~~~~~~ 286 (301)
++++..++...
T Consensus 222 ------~~~~~~~~~~~ 232 (353)
T PLN02721 222 ------KSFIRKAKRLR 232 (353)
T ss_pred ------HHHHHhHHHHH
Confidence 24666655543
No 141
>PRK10534 L-threonine aldolase; Provisional
Probab=99.88 E-value=6.4e-22 Score=177.25 Aligned_cols=212 Identities=17% Similarity=0.126 Sum_probs=148.6
Q ss_pred eeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHH
Q 022213 44 VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVI 123 (301)
Q Consensus 44 ~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~ 123 (301)
+|+|+.+.. | . +++.+.+++.+... ....|++..+..+|++++++++ + .+.+++++|+++++..+
T Consensus 1 ~~~~~~~~~---~-~-p~~~~~~a~~~~~~--~~~~Y~~~~~~~~L~~~la~~~------g--~~~~~v~~~g~~a~~~~ 65 (333)
T PRK10534 1 MIDLRSDTV---T-R-PSRAMLEAMMAAPV--GDDVYGDDPTVNALQDYAAELS------G--KEAALFLPTGTQANLVA 65 (333)
T ss_pred CcccccccC---C-C-CCHHHHHHHHhccC--CCcccCCCHHHHHHHHHHHHHh------C--CCeEEEeCchHHHHHHH
Confidence 477888753 2 2 55788888766443 2346876667899999999998 2 34557888888888888
Q ss_pred HHHhcCCCCEEEEcCCCCcc-hHHH-HHhcC-ceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcc
Q 022213 124 LSVLARPGANVLLPRPGWPY-YEGI-AQRKQ-VEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCG 194 (301)
Q Consensus 124 ~~~l~~~gd~Vl~~~p~~~~-~~~~-~~~~g-~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG 194 (301)
+.+++++||+|+++.|+|.. |... ....+ .+++.+++. .++.+|++++++++++ ++++++++||+ ||
T Consensus 66 l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G 141 (333)
T PRK10534 66 LLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NG 141 (333)
T ss_pred HHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CC
Confidence 88889999999999888753 3221 23333 566766653 4577999999998865 57889999776 59
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeE-EEEeeCCCCcc
Q 022213 195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFG-WLVTNDPNGIF 273 (301)
Q Consensus 195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG-~~~~~~~~~~~ 273 (301)
.+++.+++++|+++|+++++++++||+|....... ............+.+ +.||||.|+++ +| |++++
T Consensus 142 ~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~-~~~~~~~~~~~~~~~-~~s~SK~~~~~---~G~~~~~~------ 210 (333)
T PRK10534 142 KVLPREYLKQAWEFTRERNLALHVDGARIFNAVVA-YGCELKEITQYCDSF-TICLSKGLGTP---VGSLLVGN------ 210 (333)
T ss_pred eecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHH-cCCCHHHHHhcCCEE-EEEeEcCCCCc---ccceEEcC------
Confidence 99999999999999999999999999987322100 011111111111222 34899998775 78 56652
Q ss_pred cchhHHHHHHhhhc
Q 022213 274 QKSGIIDSIKDCLS 287 (301)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (301)
++++++++++..
T Consensus 211 --~~~i~~~~~~~~ 222 (333)
T PRK10534 211 --RDYIKRARRWRK 222 (333)
T ss_pred --HHHHHHHHHHHH
Confidence 358888877654
No 142
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.88 E-value=3.8e-21 Score=175.79 Aligned_cols=179 Identities=18% Similarity=0.237 Sum_probs=133.4
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLL 161 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~ 161 (301)
...|++.+|++. + .+..++++++++++.+++.+++++||+|+++.|.|.+ +...+...|.+++.++.
T Consensus 62 ~~~Le~~lA~l~----g----~~~~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~- 132 (405)
T PRK08776 62 RDLLGEALAELE----G----GAGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL- 132 (405)
T ss_pred HHHHHHHHHHHh----C----CCceEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC-
Confidence 467778888775 2 1334556666899999999999999999999999987 34445566888887764
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
.|++.+++.++++++++++++|+||||.+.+ +++|+++|+++|+++|+|++|..... ..++. ++.+
T Consensus 133 ------~d~~~l~~~i~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~----~~pl~-~gaD 198 (405)
T PRK08776 133 ------TDPRSLADALAQSPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL----QKPLE-FGAD 198 (405)
T ss_pred ------CCHHHHHHhcCcCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc----CCccc-ccCC
Confidence 4789999998888999999999999999987 88999999999999999999986321 22232 2222
Q ss_pred CCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccc
Q 022213 242 VPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQ 297 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q 297 (301)
+++.|.||.++.+ +...|+++++++ ++.++++.... ...+.+++.+
T Consensus 199 ---ivv~S~tK~l~g~~~~~~G~vv~~~~-------~l~~~l~~~~~~~g~~~s~~~a 246 (405)
T PRK08776 199 ---LVLHSTTKYINGHSDVVGGAVVARDA-------ELHQQLVWWANALGLTGSPFDA 246 (405)
T ss_pred ---EEEecCceeecCCCCceEEEEEeCCH-------HHHHHHHHHHHhcCCCCCHHHH
Confidence 8999999999876 578899887543 46666655433 2333444443
No 143
>PRK02948 cysteine desulfurase; Provisional
Probab=99.88 E-value=8.7e-21 Score=173.02 Aligned_cols=198 Identities=15% Similarity=0.083 Sum_probs=145.5
Q ss_pred eeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC--C------CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 45 VPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT--N------SGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 45 i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~--~------~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
+.|+.+.. -++|+.+.+++.+.++... .++.. . .-+.++|+.+++++ +.++++|++|+|+
T Consensus 2 ~yld~a~~-----~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~i~~~~g~ 69 (381)
T PRK02948 2 IYLDYAAT-----TPMSKEALQTYQKAASQYF-GNESSLHDIGGTASSLLQVCRKTFAEMI------GGEEQGIYFTSGG 69 (381)
T ss_pred EeccCCCC-----CCCCHHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCcH
Confidence 45666643 2456788888887775311 11110 0 01346677777777 4567899999999
Q ss_pred HHHHHHHHHHhc----CCCCEEEEcCCCCcch---HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCC
Q 022213 117 KQAVEVILSVLA----RPGANVLLPRPGWPYY---EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP 189 (301)
Q Consensus 117 ~~al~~~~~~l~----~~gd~Vl~~~p~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 189 (301)
++++..++.+++ ++||.|++....|+++ ...++..|.++..++++. ++.+|++.+++.++++++.+++++|
T Consensus 70 t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~ 147 (381)
T PRK02948 70 TESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK--SGLIRLVDLERAITPDTVLASIQHA 147 (381)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC--CCCCCHHHHHHhcCCCCEEEEEECC
Confidence 999999988886 5789999998777654 445567799999998753 3568999999999888899999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+||||.+++ +++|.++|+++|+++++|+++.... .+..+..+ +..+++.|+||.+|.+| +|+++++.
T Consensus 148 ~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~~g~----~~~~~~~~---~~d~~~~s~~K~~gp~G--~G~l~~~~ 214 (381)
T PRK02948 148 NSEIGTIQP---IAEIGALLKKYNVLFHSDCVQTFGK----LPIDVFEM---GIDSLSVSAHKIYGPKG--VGAVYINP 214 (381)
T ss_pred cCCcEeehh---HHHHHHHHHHcCCEEEEEChhhccc----cccCcccC---CCCEEEecHHhcCCCCc--EEEEEEcC
Confidence 999999999 7788889999999999997765421 12222222 23478899999988888 78888754
No 144
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.87 E-value=4.6e-21 Score=176.44 Aligned_cols=214 Identities=19% Similarity=0.200 Sum_probs=147.9
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF------NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
++..++|+..+.. .+..++.+.+++.+++..... ..|+......+|++.+++++ + .++.+++++
T Consensus 45 ~~~~~~~~sn~yl---~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~------g-~~~~i~~~s 114 (410)
T PRK13392 45 PRRVTIWCSNDYL---GMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLH------G-KESALLFTS 114 (410)
T ss_pred CceEEEEECCCcc---CCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHh------C-CCCEEEECc
Confidence 3567888887753 467788999999888764211 12333223567888888887 2 234566665
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc----ccCccEEEEcC
Q 022213 115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA----DKNTAAMVIIN 188 (301)
Q Consensus 115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~v~l~~ 188 (301)
| ++++..++..+.. +||.|+++...|..+...++..|.++..++. .|.+.+++.+ .+++++|++++
T Consensus 115 G-~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~t~~v~i~~ 186 (410)
T PRK13392 115 G-YVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH-------NDLADLEEQLASVDPDRPKLIAFES 186 (410)
T ss_pred H-HHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC-------CCHHHHHHHHHhccCCCCEEEEEeC
Confidence 5 6788888887754 8998888877787777777778888766542 1344444433 34678999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC-EEEEecCcccCCCCcceeEEEEee
Q 022213 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~-vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
|+||||.+.+ +++|.++|+++++++|+||+|....++..........+...+ .++++||||.|+++| ||++++
T Consensus 187 ~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~ 260 (410)
T PRK13392 187 VYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAAS 260 (410)
T ss_pred CCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc---chhhcC
Confidence 9999999999 888888899999999999999955443211111111111122 288899999999998 999863
Q ss_pred CCCCcccchhHHHHHHhhh
Q 022213 268 DPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (301)
. ++++.++++.
T Consensus 261 ~--------~~~~~l~~~~ 271 (410)
T PRK13392 261 A--------DLIDFVRSFA 271 (410)
T ss_pred H--------HHHHHHHHhC
Confidence 2 4777777654
No 145
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.87 E-value=7.6e-21 Score=173.99 Aligned_cols=166 Identities=22% Similarity=0.266 Sum_probs=131.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~ 160 (301)
....|++.+++++. .+..+++++++.|+..++.+++++||+|+++.|.|.... ..+...|+++.+++.
T Consensus 66 ~~~~le~~lA~l~g--------~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 137 (403)
T PRK07503 66 TLALLEQRMASLEG--------GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDL 137 (403)
T ss_pred hHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCC
Confidence 46889999999872 234677778899999999999999999999999987532 344568999888875
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
.|++.+++.+++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|...... .++. +..
T Consensus 138 -------~d~~~l~~~i~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~----~~l~-~g~ 202 (403)
T PRK07503 138 -------TDPAALKAAISDKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQ----RPLE-LGA 202 (403)
T ss_pred -------CCHHHHHHhcCccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC----Cchh-hCC
Confidence 3789999999888999999999999999998 888888899999999999999864332 1221 222
Q ss_pred CCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHh
Q 022213 241 IVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
.++++|+||.++.+| .|.||++. + +++.++++.
T Consensus 203 ---Di~v~S~tK~l~g~gd~~gG~v~~-~-------~~l~~~l~~ 236 (403)
T PRK07503 203 ---DLVVHSATKYLGGHGDITAGLVVG-G-------KALADRIRL 236 (403)
T ss_pred ---CEEEccccccccCCCceeEEEEEc-C-------HHHHHHHHh
Confidence 289999999999876 77888874 3 246677763
No 146
>PRK07179 hypothetical protein; Provisional
Probab=99.87 E-value=1.6e-20 Score=172.78 Aligned_cols=214 Identities=14% Similarity=0.132 Sum_probs=156.3
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC---C--CCCCC-CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG---K--FNCYA-TNSGIPPARRAIADYLSRDLPYKLSADDVYVT 113 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~---~--~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t 113 (301)
.+..+++|+..+. -++...+.+.+++.++++.. . ...|. ......+|++.+|+++ ..+.++++
T Consensus 52 ~g~~~~~~~~~~Y---L~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~--------g~~~~~~~ 120 (407)
T PRK07179 52 PGPDAIILQSNDY---LNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT--------GFESCLLC 120 (407)
T ss_pred CCCcEEEeecCCc---cCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh--------CCCcEEEE
Confidence 4566788887764 35667788999999888631 1 01111 1123467888888887 23567889
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCC
Q 022213 114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNP 192 (301)
Q Consensus 114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~np 192 (301)
+|+++|+..++++++.+||.|++..+.|......++..|.++..++. .|++.+++.+++ +++++++++++||
T Consensus 121 ~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~lV~v~~v~n~ 193 (407)
T PRK07179 121 QSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIERHGPGIIVVDSVYST 193 (407)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCC
Confidence 99999999999999999999999999998887777778887765542 588999998865 4677888999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC-EEEEecCcccCCCCcceeEEEEeeCCCC
Q 022213 193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWLVPGWRFGWLVTNDPNG 271 (301)
Q Consensus 193 tG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~-vi~~~s~SK~~~~~G~rvG~~~~~~~~~ 271 (301)
||.+++ +++|.++|+++|+++|+||+|....++......+..++...+ .+++.|+||.++ .|+||++++.
T Consensus 194 tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g---~~~G~l~~~~--- 264 (407)
T PRK07179 194 TGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA---GRAGIITCPR--- 264 (407)
T ss_pred CCcccc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh---ccCeEEEeCH---
Confidence 999999 788889999999999999999854443211111223322222 388899999975 3689998743
Q ss_pred cccchhHHHHHHhh
Q 022213 272 IFQKSGIIDSIKDC 285 (301)
Q Consensus 272 ~~~~~~~~~~~~~~ 285 (301)
++++.++..
T Consensus 265 -----~~~~~~~~~ 273 (407)
T PRK07179 265 -----ELAEYVPFV 273 (407)
T ss_pred -----HHHHHHHHh
Confidence 355665543
No 147
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.87 E-value=3.7e-21 Score=176.95 Aligned_cols=164 Identities=21% Similarity=0.203 Sum_probs=133.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCc
Q 022213 78 NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQV 153 (301)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~ 153 (301)
.+|+.+ ...+|++.+|+++ ..+..+++++++.|+..++.+++++||+|+++.+.|.+. ...+...|+
T Consensus 52 sr~~~p-~~~~le~~lA~l~--------g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~ 122 (418)
T TIGR01326 52 SRLMNP-TTDVLEQRIAALE--------GGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGI 122 (418)
T ss_pred ECCCCh-hHHHHHHHHHHHh--------CCCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCc
Confidence 344443 4578999999997 235789999999999999999999999999999998753 344567899
Q ss_pred eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC
Q 022213 154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT 233 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~ 233 (301)
++++++. .|++.+++.++++++++++++|+||+|.+.+ +++|+++|+++|+++|+|++|+.... ..
T Consensus 123 ~v~~v~~-------~d~~~l~~~l~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~----~~ 188 (418)
T TIGR01326 123 EVRFVDP-------DDPEEFEKAIDENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYL----CR 188 (418)
T ss_pred EEEEECC-------CCHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhc----CC
Confidence 9988874 2789999999888999999999999999998 88888999999999999999974321 11
Q ss_pred CccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 234 PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 234 ~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
++ ..+..|++.|+||.++.+|.|+||++++.
T Consensus 189 ~l----~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 189 PI----DHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred ch----hcCCeEEEECccccccCCccceEEEEEec
Confidence 11 11245999999999999999999999865
No 148
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.87 E-value=1e-20 Score=170.30 Aligned_cols=201 Identities=17% Similarity=0.125 Sum_probs=142.4
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--CCCCCCCCC----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FNCYATNSG----IPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
.+++|+..+.- ..+-++++.+++++.++... ...|....| ..++++.+++++ + . ++.++++++
T Consensus 2 ~~~~~~~~~~~---~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~--~~~iv~~sg 70 (349)
T cd06454 2 KVLNFCSNDYL---GLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFH----G--K--EAALVFSSG 70 (349)
T ss_pred CceecccCCcc---ccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHh----C--C--CCEEEeccH
Confidence 46677766532 34445889999999887422 112222123 356666666665 2 2 345666677
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-----CccEEEEcCCCC
Q 022213 117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-----NTAAMVIINPGN 191 (301)
Q Consensus 117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~l~~p~n 191 (301)
++++..++++++++||+|+++.|+|..+...++..|.++++++. .|.+.+++.+++ +++++++++++|
T Consensus 71 ~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~~~~~~ 143 (349)
T cd06454 71 YAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVTEGVYS 143 (349)
T ss_pred HHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEEecccc
Confidence 88998888999999999999999999988888889998887652 477788887753 356777789999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC-CCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213 192 PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI-PYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 192 ptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
|||...+ +++|+++|+++|+++|+|++|+...+... ...........+.+++++|+||.++.+| ||++++
T Consensus 144 ~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~~ 214 (349)
T cd06454 144 MDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGS 214 (349)
T ss_pred CCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC---CEEECC
Confidence 9999988 88889999999999999999975333211 1110111122345799999999988766 998863
No 149
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.87 E-value=7.4e-21 Score=172.57 Aligned_cols=176 Identities=17% Similarity=0.198 Sum_probs=137.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcC
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQ 152 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g 152 (301)
+.+|+.+ ....|++.+|++. ..+++++++|+++++..++.+++++||+|+++.|.|.+.... ....|
T Consensus 47 Y~R~~np-t~~~Le~~lA~le--------g~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~g 117 (388)
T PRK08861 47 YTRSGNP-NRGLLEQTLSELE--------SGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGD 117 (388)
T ss_pred ccCCCCc-hHHHHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCC
Confidence 4445553 5688999999998 358999999999999999999999999999999999864332 23346
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~ 232 (301)
+++.+++. .|++.+++++++++++|++++|+||||.+++ +++|+++|+++|+++|+|++|....+. .
T Consensus 118 i~v~~vd~-------~d~e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~--~- 184 (388)
T PRK08861 118 FKVQFVDQ-------SDAAALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ--K- 184 (388)
T ss_pred eEEEEECC-------CCHHHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC--C-
Confidence 77777752 5889999999889999999999999999999 778888899999999999999875432 1
Q ss_pred CCccccCCCCCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 233 TPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 233 ~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
++ .++-+ +++.|++|.++.+ +...|++++.+. ++.++++...
T Consensus 185 -pl-~~GaD---ivv~S~tK~l~G~~d~~gG~i~~~~~-------~~~~~~~~~~ 227 (388)
T PRK08861 185 -PL-ELGAD---FVIHSTTKYINGHSDVIGGVLITKTK-------EHAEELAWWG 227 (388)
T ss_pred -Cc-ccCCC---EEEeecceeccCCCcceeEEEEecHH-------HHHHHHHHHH
Confidence 12 12222 8999999998874 578899886442 3556665443
No 150
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.87 E-value=1.1e-20 Score=171.91 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=146.5
Q ss_pred CCChHHHHHHHHHHHhcCC----CCCCCC----CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC
Q 022213 58 FRTAVEAEDAIVDAVRSGK----FNCYAT----NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR 129 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~----~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~ 129 (301)
+++|+.+.+++.+.++... ...|.. ..+..++|+.+++++.. ...++|++|+|+++++..++.++++
T Consensus 10 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~v~~~~g~t~al~~~~~~~~~ 84 (376)
T TIGR01977 10 YPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNA-----PSSAHVVFTNNATTALNIALKGLLK 84 (376)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCc-----CCCCeEEEeCCHHHHHHHHHHhccC
Confidence 5677889999888776432 112322 13466888999998832 1335899999999999999999999
Q ss_pred CCCEEEEcCCCCcchH----HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHH
Q 022213 130 PGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEI 205 (301)
Q Consensus 130 ~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i 205 (301)
+||+|+++.+.|..+. ..++..|.+++.++.+. ++.+|++.+++.++++++++++++|+||||.+++ +++|
T Consensus 85 ~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~---~~~i 159 (376)
T TIGR01977 85 EGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN--EGLISPERIKRAIKTNTKLIVVSHASNVTGTILP---IEEI 159 (376)
T ss_pred CCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHhcCCCCeEEEEECCCCCccccCC---HHHH
Confidence 9999999999988653 34455699999888753 4568999999999888999999999999999999 7788
Q ss_pred HHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 206 AEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 206 ~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
.++|+++|+++|+|++++.... +..+....- -+++.|++|+++.|. .+|.+++.+.
T Consensus 160 ~~l~~~~~~~livD~a~~~g~~----~~~~~~~~~---D~~~~s~~K~l~~p~-g~g~l~~~~~ 215 (376)
T TIGR01977 160 GELAQENGIFFILDAAQTAGVI----PIDMTELAI---DMLAFTGHKGLLGPQ-GTGGLYIREG 215 (376)
T ss_pred HHHHHHcCCEEEEEhhhccCcc----CCCchhcCC---CEEEecccccccCCC-CceEEEEcCC
Confidence 8999999999999999986332 112222222 288889999976553 3676666554
No 151
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.87 E-value=7.4e-21 Score=173.34 Aligned_cols=170 Identities=22% Similarity=0.243 Sum_probs=131.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----hcCceEEEee
Q 022213 84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFD 159 (301)
Q Consensus 84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~ 159 (301)
....+|++.+|+++.. +..++++++++|+..++.+++++||+|+++.|.|.+....+. ..|+++..++
T Consensus 61 p~~~~Le~~lA~~~g~--------~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d 132 (388)
T PRK07811 61 PTRTALEEQLAALEGG--------AYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVD 132 (388)
T ss_pred ccHHHHHHHHHHHhCC--------CceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeC
Confidence 4678999999999832 334555677899999999999999999999999986433332 3577777765
Q ss_pred cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
. .|++.+++.+++++++|++++|+||||...+ +++|+++|+++|+++|+|++|+..... .++. ..
T Consensus 133 ~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~----~p~~-~g 197 (388)
T PRK07811 133 L-------SDLDAVRAAITPRTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ----QPLA-LG 197 (388)
T ss_pred C-------CCHHHHHHhcCcCCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC----Cchh-hC
Confidence 4 4889999999889999999999999999887 888899999999999999999875432 1222 11
Q ss_pred CCCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 240 SIVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
. -+++.|+||.++.+| .+.||+++++. ++.++++...
T Consensus 198 a---Divv~S~sK~l~g~~~~~gG~vv~~~~-------~l~~~~~~~~ 235 (388)
T PRK07811 198 A---DVVVHSTTKYIGGHSDVVGGALVTNDE-------ELDEAFAFLQ 235 (388)
T ss_pred C---cEEEecCceeecCCCCcEEEEEEECCH-------HHHHHHHHHH
Confidence 2 289999999998864 57899987553 3656665543
No 152
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.87 E-value=9.5e-21 Score=173.70 Aligned_cols=206 Identities=20% Similarity=0.249 Sum_probs=153.9
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC-----CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT-----NSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+.++++|+.|+|+ ++.|+.+.++..+. . ....|.+ ..|..++++++++++.+.++. +.++++++++
T Consensus 19 ~~~~~~l~~g~~~----~~~p~~~~~~~~~~-~--~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~~~~~ 89 (398)
T cd00613 19 DQSMSFLGSGTYK----HNPPAVIKRNILEN-E--FYTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANASLQDE 89 (398)
T ss_pred ccCcccccccccC----CcCcHHHHHHhccc-c--CcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--CccceeccCc
Confidence 4567999999975 66777776666554 2 2234655 678999999999999987764 4447777775
Q ss_pred HHH-HHHHHHHHhcCC--CCEEEEcCCCCcchHHHHHhcC----ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcC
Q 022213 116 CKQ-AVEVILSVLARP--GANVLLPRPGWPYYEGIAQRKQ----VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN 188 (301)
Q Consensus 116 ~~~-al~~~~~~l~~~--gd~Vl~~~p~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~ 188 (301)
++. +...+..++..+ ||+|++++|.|..+...+...+ .+++.+++.. ++.+|++.+++.+.++++++++++
T Consensus 90 g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~t~~viv~~ 167 (398)
T cd00613 90 ATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE--GGTVDLEALKEEVSEEVAALMVQY 167 (398)
T ss_pred hHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC--CCCcCHHHHHHhcCCCeEEEEEEC
Confidence 554 444445555665 9999999999999887777776 8888888743 346899999999988899999998
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEE
Q 022213 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWL 264 (301)
Q Consensus 189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~ 264 (301)
|+ |+|.+.+ .+++|.++|+++|+++|+|+++...... .....+ +..+++.|+||++ +| |+|+||+
T Consensus 168 ~~-~~G~~~~--~l~~i~~la~~~g~~livD~~~~~~~~~----~~~~~~---~~d~~~~s~~K~~-~p~g~Ggp~~g~l 236 (398)
T cd00613 168 PN-TLGVFED--LIKEIADIAHSAGALVYVDGDNLNLTGL----KPPGEY---GADIVVGNLQKTG-VPHGGGGPGAGFF 236 (398)
T ss_pred CC-CCceecc--hHHHHHHHHHhcCCEEEEEeccccccCC----CChHHc---CCCEEEeeccccC-CCCCCCCCceeEE
Confidence 85 8999953 4699999999999999999987642211 111112 2349999999997 66 8999999
Q ss_pred EeeC
Q 022213 265 VTND 268 (301)
Q Consensus 265 ~~~~ 268 (301)
+++.
T Consensus 237 ~~~~ 240 (398)
T cd00613 237 AVKK 240 (398)
T ss_pred EEhh
Confidence 9854
No 153
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.87 E-value=9.3e-21 Score=174.02 Aligned_cols=218 Identities=14% Similarity=0.089 Sum_probs=154.3
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC------CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG------KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
.+..++|..|+. .+++.+++++.+.+... ....|....+...+++.+++++.+.++. +...|+++
T Consensus 18 ~~~~~~~~~~~~------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~v~~~- 88 (402)
T cd00378 18 QRETLELIASEN------FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGA--EYANVQPH- 88 (402)
T ss_pred HHhCeeeeccCC------cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCC--CceeeecC-
Confidence 356889977752 23678888887654210 1123445556677887776666665553 34455555
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH-----HHhcCceEEEeecCCC-CCCCCCHHHHHhhcc-cCccEEEEc
Q 022213 115 GCKQAVEVILSVLARPGANVLLPRPGWPYYEGI-----AQRKQVEVRHFDLLPE-RNWEVDLDAVEALAD-KNTAAMVII 187 (301)
Q Consensus 115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~-----~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~v~l~ 187 (301)
|+++|+..++.+++++||+|+++.|.|.++... ++..|.++..+++..+ +++.+|++.+++.+. .++++++++
T Consensus 89 sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~ 168 (402)
T cd00378 89 SGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAG 168 (402)
T ss_pred CcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEec
Confidence 457999999999999999999999999866332 5667877777776543 257899999999885 578888888
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCC-cccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213 188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY-GHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y-~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
+|+||+ ..+ +++|+++|+++|+++|+|++| ..+.+.+....++. ..+ ++++|+||++ +|.|.||+++
T Consensus 169 ~~~~~~--~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~----~~d-v~~~s~sK~l--~G~~gg~i~~ 236 (402)
T cd00378 169 ASAYPR--PID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP----GAD-VVTTTTHKTL--RGPRGGLILT 236 (402)
T ss_pred CcccCC--CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc----CCc-EEEeccccCC--CCCCceEEEe
Confidence 988764 445 889999999999999999995 44444442222232 122 7899999985 8899999998
Q ss_pred eCCCCcccchhHHHHHHhhh
Q 022213 267 NDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~ 286 (301)
+++ +++++++...
T Consensus 237 ~~~-------~~~~~l~~~~ 249 (402)
T cd00378 237 RKG-------ELAKKINSAV 249 (402)
T ss_pred ccH-------HHHHHHHHHh
Confidence 552 3777776543
No 154
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.87 E-value=6.6e-21 Score=174.19 Aligned_cols=164 Identities=20% Similarity=0.229 Sum_probs=132.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCc----chHHHHHhcC
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP----YYEGIAQRKQ 152 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~----~~~~~~~~~g 152 (301)
+..|+.+ ...+|++.+|++. ..++.+++++++.|+..++.+++++||+|+++...|. .+...++..|
T Consensus 64 Y~r~~~p-~~~~le~~lA~l~--------g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G 134 (403)
T PRK07810 64 YSRYGNP-TVSMFEERLRLIE--------GAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWG 134 (403)
T ss_pred eeCCCCc-hHHHHHHHHHHHh--------CCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcC
Confidence 4455554 4678999999997 3458899999999999999999999999999876554 3445667789
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~ 232 (301)
+++++++. .|++.+++++++++++|++++|+||+|.+.+ +++|+++|+++|+++|+|++|+...+..
T Consensus 135 ~~v~~vd~-------~d~~~l~~ai~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~--- 201 (403)
T PRK07810 135 VETVFVDG-------EDLSQWEEALSVPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQR--- 201 (403)
T ss_pred cEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccCC---
Confidence 99998864 4889999999889999999999999999998 8888999999999999999998654432
Q ss_pred CCccccCCCCCEEEEecCcccCCCCccee-EEEEee
Q 022213 233 TPMGLFGSIVPVITLGSISKRWLVPGWRF-GWLVTN 267 (301)
Q Consensus 233 ~~~~~~~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~ 267 (301)
++ .++. -+++.|++|.++.+|.++ |+++++
T Consensus 202 -~~-~~ga---Divv~S~tK~l~g~g~~~gG~v~~~ 232 (403)
T PRK07810 202 -GL-PLGA---DVVVYSGTKHIDGQGRVLGGAILGD 232 (403)
T ss_pred -hh-hcCC---cEEEccCCceecCCcCceeEEEEeC
Confidence 11 1122 288999999999899998 666653
No 155
>PLN02483 serine palmitoyltransferase
Probab=99.87 E-value=6.5e-21 Score=178.28 Aligned_cols=216 Identities=15% Similarity=0.144 Sum_probs=149.9
Q ss_pred CCCeeeccCCCCCCCC--CCCChHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 41 PRPVVPLGYGDPTAFP--CFRTAVEAEDAIVDAVRS--GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p--~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
.+..+||+..+.--+. +..+++.+.+++.+.--. ..-..|++..++.++++.+|+++. .++.|++++|
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g-------~~~ai~~~~G- 170 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG-------KPAAIVFGMG- 170 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC-------CCcEEEECCH-
Confidence 5668899888753221 112234555555443211 122347776788999999999993 2455666665
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-------cC-----ccEE
Q 022213 117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-------KN-----TAAM 184 (301)
Q Consensus 117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~-----~~~v 184 (301)
+.+...++.+++++||.|++++|+|.++...++..|++++.++.+ |.+.+++.++ ++ .+++
T Consensus 171 ~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~l 243 (489)
T PLN02483 171 YATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKII 243 (489)
T ss_pred HHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEE
Confidence 555668888899999999999999999999999999999988752 3455554432 11 2445
Q ss_pred EEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC--CCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213 185 VIINP-GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS--IPYTPMGLFGSIVPVITLGSISKRWLVPGWRF 261 (301)
Q Consensus 185 ~l~~p-~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~--~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv 261 (301)
+++.+ .|++|.+.+ +++|+++|++|++++|+||+|+...++. .....+...+..+..|+++||||+|+++|
T Consensus 244 ivve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G--- 317 (489)
T PLN02483 244 VIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG--- 317 (489)
T ss_pred EEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc---
Confidence 55554 699999988 8899999999999999999998544321 11222222233345699999999999887
Q ss_pred EEEEeeCCCCcccchhHHHHHHhh
Q 022213 262 GWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 262 G~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
||++++. +++++++..
T Consensus 318 G~i~~~~--------~li~~l~~~ 333 (489)
T PLN02483 318 GYIAGSK--------ELIQYLKRT 333 (489)
T ss_pred eEEEcCH--------HHHHHHHHh
Confidence 9998743 588888765
No 156
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.87 E-value=7.1e-21 Score=174.08 Aligned_cols=241 Identities=13% Similarity=0.094 Sum_probs=161.4
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.++||..|.-..+-.. .++.+.+++.++++... ..+. ....+...++++.+.+.. ..+++++++|++
T Consensus 27 d~dG~~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~--~~~~-~~~~~~~~~la~~l~~~~----~~~~v~~~~sGs 98 (389)
T PRK01278 27 DEDGERYLDFASGIAVNSLGH-AHPHLVEALKEQAEKLW--HVSN-LYRIPEQERLAERLVENS----FADKVFFTNSGA 98 (389)
T ss_pred ECCCCEEEECCccHhhccCCC-CCHHHHHHHHHHHHhcC--cccc-ccCChHHHHHHHHHHhhC----CCCEEEEcCCcH
Confidence 345888999988632211123 45788899998887421 1111 122344555666665421 346899999999
Q ss_pred HHHHHHHHHh----cCCCC----EEEEcCCCCcchHHHHHhcCceEEEeec-CC-CCCCC----CCHHHHHhhcccCccE
Q 022213 118 QAVEVILSVL----ARPGA----NVLLPRPGWPYYEGIAQRKQVEVRHFDL-LP-ERNWE----VDLDAVEALADKNTAA 183 (301)
Q Consensus 118 ~al~~~~~~l----~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~-~~-~~~~~----~~~~~l~~~~~~~~~~ 183 (301)
+|++.+++.+ .++|| +|++.+++|+++.......+........ .+ ..++. .|++.+++.+++++++
T Consensus 99 eA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~a 178 (389)
T PRK01278 99 EAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAA 178 (389)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEE
Confidence 9999999877 34676 8999999999886555554433222110 00 11121 5889999998877888
Q ss_pred EEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeE
Q 022213 184 MVIINPGNPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFG 262 (301)
Q Consensus 184 v~l~~p~nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG 262 (301)
+++..++|++| .+++.+.+++|.++|++||+++|+||+|..+.+.+..+ ....++-..+ +.++||.++ +|+|+|
T Consensus 179 vivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~~~~~~~pd---i~t~sK~l~-~G~~ig 253 (389)
T PRK01278 179 ILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF-AHEWAGVTPD---IMAVAKGIG-GGFPLG 253 (389)
T ss_pred EEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce-eecccCCCCC---EEEEehhcc-CCcceE
Confidence 88887788888 78899999999999999999999999999876655322 2222222223 348999976 899999
Q ss_pred EEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 263 WLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
|+++++ ++++.+..... ...+.+++.|.+
T Consensus 254 ~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aa 283 (389)
T PRK01278 254 ACLATE--------EAAKGMTPGTHGSTYGGNPLAMAV 283 (389)
T ss_pred EEEEcH--------HHHhccCCCCCCCCCCccHHHHHH
Confidence 999854 35566554432 233566676654
No 157
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.87 E-value=1.6e-20 Score=171.12 Aligned_cols=165 Identities=13% Similarity=0.180 Sum_probs=127.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcC
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQ 152 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g 152 (301)
+.+|+.+ ...+|++.+|+++. .+..+++++++.++..++.+++++||+|+++.|.|......+ ...|
T Consensus 55 y~r~~~p-t~~~Le~~lA~l~G--------~~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~g 125 (386)
T PRK06767 55 YSRLGNP-TVKLFEERMAVLEG--------GEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFM 125 (386)
T ss_pred ccCCCCc-chHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcC
Confidence 4445543 46899999999982 245666667778999999999999999999999888654443 3346
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~ 232 (301)
+++.+++. .|++.+++++++++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....+..
T Consensus 126 i~~~~~~~-------~d~~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~--- 192 (386)
T PRK06767 126 ITHSFCDM-------ETEADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQR--- 192 (386)
T ss_pred eEEEEeCC-------CCHHHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence 66555543 4789999999888999999999999999999 7888888999999999999997533321
Q ss_pred CCccccCCCCCEEEEecCcccCCCCccee-EEEEeeC
Q 022213 233 TPMGLFGSIVPVITLGSISKRWLVPGWRF-GWLVTND 268 (301)
Q Consensus 233 ~~~~~~~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~ 268 (301)
++. .+. .+++.|+||.++++|.|+ ||+++++
T Consensus 193 -pl~-~g~---Div~~S~sK~l~g~g~~~gG~v~~~~ 224 (386)
T PRK06767 193 -PLE-LGC---DAVVHSATKYIGGHGDVVAGVTICKT 224 (386)
T ss_pred -chh-cCC---cEEEecCcceecCCCCceeEEEEeCh
Confidence 121 111 278889999999999986 8888743
No 158
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.86 E-value=1.6e-20 Score=171.17 Aligned_cols=174 Identities=15% Similarity=0.188 Sum_probs=134.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCc
Q 022213 78 NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQV 153 (301)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~ 153 (301)
..|+.+ ....|++.+|++.. .+..+++++++.|+..++.+++++||+|+++.|.|... ...+...|+
T Consensus 54 ~r~~~p-~~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~ 124 (391)
T TIGR01328 54 SRLGNP-TVSNLEGRIAFLEG--------TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGI 124 (391)
T ss_pred eCCCCc-hHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe
Confidence 344443 46789999999982 34578888889999999999999999999999988643 344456788
Q ss_pred eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC
Q 022213 154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT 233 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~ 233 (301)
++.++++. |++.+++.+++++++|++++|+||+|.+.+ +++|+++|+++|+++|+|++|.......
T Consensus 125 ~~~~vd~~-------d~e~l~~~i~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~---- 190 (391)
T TIGR01328 125 QVDFINMA-------IPEEVKAHIKDNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLTN---- 190 (391)
T ss_pred EEEEECCC-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccCC----
Confidence 88888752 788999999888999999999999999999 8888888999999999999998644321
Q ss_pred CccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213 234 PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 234 ~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
++. ... -+++.|+||.++++|.++|.+++.+ ++++++++..
T Consensus 191 ~~~-~g~---Divv~S~sK~lgg~g~~~gG~v~~~-------~~li~~l~~~ 231 (391)
T TIGR01328 191 PVA-LGV---DVVVHSATKYIGGHGDVVAGLICGK-------AELLQQIRMV 231 (391)
T ss_pred chh-cCC---CEEEccccccccCCCCceEEEEEcC-------HHHHHHHHHH
Confidence 121 111 2888999999999998865444433 2467777653
No 159
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.86 E-value=1.3e-20 Score=171.90 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=140.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcC
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQ 152 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g 152 (301)
+..|+.+ ...+|++.++++. ..+++++++|+++|+..++.+++++||+|+++.|.|..+.. .+...|
T Consensus 59 Y~r~~~p-t~~~Le~~lA~l~--------g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~G 129 (394)
T PRK07050 59 YGLHATP-TSLALAQRLAEIE--------GGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFG 129 (394)
T ss_pred cCCCCCH-HHHHHHHHHHHHh--------CCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcC
Confidence 4444443 4578888888886 35689999999999999999999999999999999998653 456789
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~ 232 (301)
+++.+++. .+.+.+++.+++++++|++++|+||+|...+ +++|+++|+++|+++|+|++|....+.
T Consensus 130 i~v~~vd~-------~~~~~l~~~i~~~tklV~le~p~Np~~~~~d---i~~I~~ia~~~gi~livD~a~a~~~~~---- 195 (394)
T PRK07050 130 ITVRFYDP-------LIGAGIADLIQPNTRLIWLEAPGSVTMEVPD---VPAITAAARARGVVTAIDNTYSAGLAF---- 195 (394)
T ss_pred eEEEEECC-------CCHHHHHHhcCCCCeEEEEECCCCCCccHhh---HHHHHHHHHHcCCEEEEECCccccccc----
Confidence 99888763 1447788889889999999999999976554 999999999999999999999863321
Q ss_pred CCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccc
Q 022213 233 TPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTF 295 (301)
Q Consensus 233 ~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 295 (301)
.++. ++ -.|++.|+||.++. .+.+.|++++.++ ++.++++.... .+.+.+++
T Consensus 196 ~~l~-~G---aDi~v~S~tK~~~g~~~~~gG~v~~~~~-------~~~~~~~~~~~~~G~~~~~~ 249 (394)
T PRK07050 196 KPFE-HG---VDISVQALTKYQSGGSDVLMGATITADA-------ELHAKLKLARMRLGIGVSAD 249 (394)
T ss_pred CHHH-cC---CeEEEEECCceecCCCCeeEEEEEECCH-------HHHHHHHHHHHhcCCCCCHH
Confidence 1111 11 23899999999764 5567899887543 46677765544 23344443
No 160
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.86 E-value=5.8e-21 Score=175.18 Aligned_cols=234 Identities=17% Similarity=0.108 Sum_probs=156.4
Q ss_pred cCCCCCeeeccCCCCCCCCCCCC-hHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRT-AVEAEDAIVDAVRSGK--FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~-~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
..+++.+|+|..|.+.. .++. ++.+.+++.++++... ...|....+ .+|.+.++++ .+. .+++++++++
T Consensus 39 d~dg~~~lD~~s~~~~~--~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~-~~la~~l~~~----~~~-~~~~~v~~~~ 110 (398)
T PRK03244 39 DVDGKEYLDLLGGIAVN--ALGHAHPAVVEAVTRQLATLGHVSNLFATEPQ-IALAERLVEL----LGA-PEGGRVFFCN 110 (398)
T ss_pred ECCCCEEEECCcCHhhc--cCCCCCHHHHHHHHHHHHhccCccCccCCHHH-HHHHHHHHHh----CCC-CCCCEEEEeC
Confidence 34688899999885432 2343 6889999998887522 223544322 3444444444 331 2357999999
Q ss_pred CHHHHHHHHHHHhcCCC-CEEEEcCCCCcchHHHHHhc-Cce------------EEEeecCCCCCCCCCHHHHHhhcccC
Q 022213 115 GCKQAVEVILSVLARPG-ANVLLPRPGWPYYEGIAQRK-QVE------------VRHFDLLPERNWEVDLDAVEALADKN 180 (301)
Q Consensus 115 g~~~al~~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (301)
|+++|+..+++.+..+| +.|+..+++|+++....... +.. +..++. .|++.+++.+.++
T Consensus 111 sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~~ 183 (398)
T PRK03244 111 SGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVDDD 183 (398)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhcCC
Confidence 99999999999877666 56777788998774333322 211 111111 3788999888767
Q ss_pred ccEEEEcCCCCCcccCCCHHH-HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcc
Q 022213 181 TAAMVIINPGNPCGNVFTYHH-LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW 259 (301)
Q Consensus 181 ~~~v~l~~p~nptG~~~~~~~-l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~ 259 (301)
++++++..++||+|.+++.++ +++|.++|++||+++|+||+|..+.+.+..+ .+...+-..+++ +|||.++ +|+
T Consensus 184 ~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~~~~~~~~pDi~---t~sK~l~-~G~ 258 (398)
T PRK03244 184 TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF-AHQHDGVTPDVV---TLAKGLG-GGL 258 (398)
T ss_pred eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH-hhhhhCCCCCEE---EEchhhh-CCc
Confidence 888888888999999987655 9999999999999999999998866554322 112222223443 8899987 899
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213 260 RFGWLVTNDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC 299 (301)
Q Consensus 260 rvG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~ 299 (301)
|+||+++++ ++++.+.... ....+.+++.|.+
T Consensus 259 ~ig~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aa 291 (398)
T PRK03244 259 PIGACLAFG--------PAADLLTPGLHGSTFGGNPVACAA 291 (398)
T ss_pred ccEEEEEcH--------HHHhhccCCCCcCCCCCCHHHHHH
Confidence 999999854 3666665422 1222455565544
No 161
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.86 E-value=1.2e-20 Score=170.78 Aligned_cols=187 Identities=18% Similarity=0.194 Sum_probs=138.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcC
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQ 152 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g 152 (301)
+.+|+.+ ...+|++.+|++.. .+..++++|+++++..++ .++++||+|+++.|.|.+. ...++..|
T Consensus 46 y~r~~~p-t~~~le~~la~l~g--------~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G 115 (366)
T PRK08247 46 YSRTGNP-TRGVLEQAIADLEG--------GDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWN 115 (366)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccC
Confidence 4445553 46789999999982 234578888899998876 5778999999999999874 33445689
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~ 232 (301)
+++.+++. .|++.+++.+++++++|++++|+||+|. ..++++|+++|+++|+++|+|++|.......
T Consensus 116 ~~v~~vd~-------~d~~~l~~~i~~~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~--- 182 (366)
T PRK08247 116 VRFVYVNT-------ASLKAIEQAITPNTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR--- 182 (366)
T ss_pred ceEEEECC-------CCHHHHHHhcccCceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCccccccC---
Confidence 99988865 4889999999888999999999999865 4559999999999999999999996433221
Q ss_pred CCccccCCCCCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213 233 TPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV 298 (301)
Q Consensus 233 ~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~ 298 (301)
++. .+..|+++|+||.++.+ +.+.||+++++. ++.++++.... ...+.+++.|.
T Consensus 183 -p~~----~g~di~i~S~sK~~~g~~d~~~G~iv~~~~-------~l~~~~~~~~~~~g~~~s~~~a~ 238 (366)
T PRK08247 183 -PLE----EGADIVIHSATKYLGGHNDVLAGLVVAKGQ-------ELCERLAYYQNAAGAVLSPFDSW 238 (366)
T ss_pred -chh----cCCcEEEeecceeccCCCceeeeEEecChH-------HHHHHHHHHHHhcCCCCChHHHH
Confidence 121 12349999999998763 679999987532 46666665543 23345555554
No 162
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.86 E-value=4.6e-20 Score=167.35 Aligned_cols=194 Identities=21% Similarity=0.335 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCC
Q 022213 62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPG 140 (301)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~ 140 (301)
+...+++.+++.++.. ++ ...+++++++++.+.. ..+++++|+|+++|+.+++.++ ++|||+|+++.++
T Consensus 11 ~~e~~a~~~~~~~~~~--~~----~g~~~~~~e~~la~~~----g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t 80 (376)
T TIGR02379 11 GQELEYIAEAISEGKL--SG----DGPFSRRCETWLENRT----GTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYT 80 (376)
T ss_pred HHHHHHHHHHHHcCCc--cC----CcHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCC
Confidence 4557788888875432 21 1245555555555432 4568999999999999999988 7899999999999
Q ss_pred CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220 (301)
Q Consensus 141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~ 220 (301)
|..+...+...|++++++++++ +++.+|++.+++.+++++++|+ |+||+|...+ +++|.++|+++|++||+|+
T Consensus 81 ~~~~~~~~~~~G~~~v~vd~d~-~~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDa 153 (376)
T TIGR02379 81 FVSTANAFVLRGAKIVFVDIRP-DTMNIDETLIESAITHRTKAIV---PVHYAGVACD---MDTIMALANKHQLFVIEDA 153 (376)
T ss_pred cHHHHHHHHHcCCEEEEEecCC-CcCCCCHHHHHHhcCcCceEEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEEC
Confidence 9998888889999999999865 3477999999999988888876 6778999998 7888999999999999999
Q ss_pred CCcccc-cCCCCCCCccccCCCCCEEEEecC--cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 221 VYGHLT-FGSIPYTPMGLFGSIVPVITLGSI--SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 221 ~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~--SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
+|+... +.+... ..+.. +.+.|| +|.+ .+|.+.|+++.+++ ++.++++.+.+
T Consensus 154 a~~~g~~~~~~~~---g~~~~----~~~fSf~~~K~l-~~g~~gG~v~~~~~-------~~~~~~~~~~~ 208 (376)
T TIGR02379 154 AQGVMSTYKGRAL---GSIGH----LGTFSFHETKNY-TSGGEGGALLINDQ-------AFIERAEIIRE 208 (376)
T ss_pred ccccCCccCCccc---CCCCC----EEEEeCCCCCcC-cccCCceEEEECCH-------HHHHHHHHHHH
Confidence 998765 444322 22211 333343 3664 56778999988653 57777777654
No 163
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=99.86 E-value=3.7e-21 Score=163.75 Aligned_cols=276 Identities=16% Similarity=0.191 Sum_probs=198.9
Q ss_pred hhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCC-CCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213 16 EHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAF-PCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA 94 (301)
Q Consensus 16 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~-p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 94 (301)
.+.++|+++|.++++.+-+ ...+..|||+.|...-. ...-..+.|++|-++.+......+|.|..|++++.+..+
T Consensus 30 ~V~maPpDpILGVTeAfk~----D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sa 105 (427)
T KOG1411|consen 30 HVEMAPPDPILGVTEAFKK----DPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSA 105 (427)
T ss_pred cCCCCCCCCcccHHHHHhc----CCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHH
Confidence 4668999999999985543 34678899999944211 111234567777666655444558999999999999999
Q ss_pred HHHhhhCCCCCCCCCEEE--cCCHHHHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCH
Q 022213 95 DYLSRDLPYKLSADDVYV--TLGCKQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL 170 (301)
Q Consensus 95 ~~l~~~~~~~~~~~~i~~--t~g~~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 170 (301)
+++-......+..++|+. |-++|.++......+. -++..|.+|+|+|.+...++..+|+.+.++..-.....++|.
T Consensus 106 kLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~ 185 (427)
T KOG1411|consen 106 KLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDF 185 (427)
T ss_pred HHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccch
Confidence 999553333344556644 5566777777666664 378899999999999999999999999888876666778999
Q ss_pred HHHHhhcccCcc-EEEEc--CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC--CCCCccccCC-CCCE
Q 022213 171 DAVEALADKNTA-AMVII--NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI--PYTPMGLFGS-IVPV 244 (301)
Q Consensus 171 ~~l~~~~~~~~~-~v~l~--~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~~~-~~~v 244 (301)
+.+.+.+++.+. .+++. ..|||||+-.+.++|++|.++.++.+.+-+.|-+|..|.-++. ...++..+.. ..++
T Consensus 186 ~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~ 265 (427)
T KOG1411|consen 186 KGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEI 265 (427)
T ss_pred HHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCce
Confidence 887777765332 23444 3499999999999999999999999999999999999876532 1222223322 3468
Q ss_pred EEEecCcccCCCCcceeEEE--EeeCCCCcccchhHHHHHHhh-hcccCCCcccccc
Q 022213 245 ITLGSISKRWLVPGWRFGWL--VTNDPNGIFQKSGIIDSIKDC-LSIYSDIPTFIQV 298 (301)
Q Consensus 245 i~~~s~SK~~~~~G~rvG~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~ 298 (301)
+++.|+.|.+|+.|-|+|.+ ++.+.+.. .++.++++.+ +.+.+++|.....
T Consensus 266 ~laQSyAKNMGLYgERvGa~svvc~~ad~A---~rV~SQlk~liRpmYSnPP~hGAr 319 (427)
T KOG1411|consen 266 LLAQSYAKNMGLYGERVGALSVVCKDADEA---KRVESQLKILIRPMYSNPPLHGAR 319 (427)
T ss_pred EeehhhhhhcchhhhccceeEEEecCHHHH---HHHHHHHHHHhcccccCCCccchh
Confidence 99999999999999999996 44443321 2355566665 3466666654433
No 164
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.86 E-value=2.3e-20 Score=171.18 Aligned_cols=192 Identities=15% Similarity=0.119 Sum_probs=143.7
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcC
Q 022213 59 RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPR 138 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~ 138 (301)
..++.+.+++.+.+ . .|.. .+..++++++.+.+.+.++.+ ..+.++++++++++++.++..++++||+|++++
T Consensus 19 ~~~~~V~~a~~~~~----~-~~~~-~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~ 91 (401)
T PLN02409 19 NIPERVLRAMNRPN----E-DHRS-PAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTLSPGDKVVSFR 91 (401)
T ss_pred CCCHHHHHHhcCCC----C-CCCC-HHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeC
Confidence 45566766664432 2 2322 356778888888887776643 234688899999999999999999999999999
Q ss_pred CCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc----CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 022213 139 PGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK----NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL 212 (301)
Q Consensus 139 p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~ 212 (301)
++|++. ...++..|.+++.++.+.. ..++++.+++.+++ +++++++++++||||.+++.+++.++++ |+++
T Consensus 92 ~~~~~~~~~~~~~~~g~~v~~v~~~~~--~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~ 168 (401)
T PLN02409 92 IGQFSLLWIDQMQRLNFDVDVVESPWG--QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQH 168 (401)
T ss_pred CCchhHHHHHHHHHcCCceEEEECCCC--CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-hhcc
Confidence 988754 4667888999999987543 34789999999875 6899999999999999999665555555 9999
Q ss_pred CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 213 RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 213 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
|+++|+|++++. +..+..+..++-+ +++.|.+|++++|. ++||++++.
T Consensus 169 g~~~vvD~v~s~----g~~~id~~~~~~D---~~~~s~~K~l~~P~-G~G~l~~~~ 216 (401)
T PLN02409 169 PALLLVDGVSSI----GALDFRMDEWGVD---VALTGSQKALSLPT-GLGIVCASP 216 (401)
T ss_pred CcEEEEEccccc----CCccccccccCcc---EEEEcCccccCcCC-CcceeEECH
Confidence 999999999874 2222223333222 77778899987654 699999854
No 165
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.86 E-value=4.6e-20 Score=167.72 Aligned_cols=190 Identities=21% Similarity=0.235 Sum_probs=142.5
Q ss_pred CChHHHHHHHHHHHhcCCCC-CCCC-------CCCCHHHHHHHHHHHhhhCCCCCC-CCCEEEcCCHHHHHHHHHHHhcC
Q 022213 59 RTAVEAEDAIVDAVRSGKFN-CYAT-------NSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAVEVILSVLAR 129 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~-~Y~~-------~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t~g~~~al~~~~~~l~~ 129 (301)
++|+.+.+++.+.+...... ..+. .....++|+.+++++ +.+ ++++++|+|+++++..++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~v~~~~g~t~a~~~~~~~l~~ 83 (373)
T cd06453 10 QKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFI------NAPSPDEIIFTRNTTEAINLVAYGLGR 83 (373)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHh------CCCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence 44567888887776432100 0000 112457888888887 334 67999999999999999999987
Q ss_pred ---CCCEEEEcCCCCcch----HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213 130 ---PGANVLLPRPGWPYY----EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL 202 (301)
Q Consensus 130 ---~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l 202 (301)
+||+|+++++.|.+. ...++..|.+++.++.+ .++.+|++.+++.++++++++++++|+||||.+.+ +
T Consensus 84 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~---~ 158 (373)
T cd06453 84 ANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD--DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINP---V 158 (373)
T ss_pred cCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC--CCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCC---H
Confidence 899999999999874 33445779999999875 34569999999999888999999999999999999 7
Q ss_pred HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
++|+++|+++|+++++|++|..... +..+..+.. .+++.|++|.++. .++||+++++
T Consensus 159 ~~i~~~~~~~~~~li~D~a~~~~~~----~~~~~~~~~---d~~~~s~~K~~~~--~g~g~~~~~~ 215 (373)
T cd06453 159 KEIGEIAHEAGVPVLVDGAQSAGHM----PVDVQDLGC---DFLAFSGHKMLGP--TGIGVLYGKE 215 (373)
T ss_pred HHHHHHHHHcCCEEEEEhhhhcCce----eeeccccCC---CEEEeccccccCC--CCcEEEEEch
Confidence 8888889999999999999875221 112222222 2677899999775 5689998854
No 166
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.86 E-value=3e-20 Score=168.57 Aligned_cols=170 Identities=18% Similarity=0.208 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEee
Q 022213 84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFD 159 (301)
Q Consensus 84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~ 159 (301)
....+|++.++++. ..+..++++++++|+..++.+++++||+|+++.+.|.+... .+...|+++.+++
T Consensus 40 p~~~~le~~la~l~--------g~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 111 (369)
T cd00614 40 PTVDALEKKLAALE--------GGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVD 111 (369)
T ss_pred hhHHHHHHHHHHHH--------CCCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeC
Confidence 35678999999887 23578888999999999999999999999999999987543 3446788888876
Q ss_pred cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
. .+++.+++.+++++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|++|+...+. .++ .+
T Consensus 112 ~-------~d~~~l~~~i~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~----~~~-~~- 175 (369)
T cd00614 112 P-------DDPEALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQ----RPL-EL- 175 (369)
T ss_pred C-------CCHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcC----Chh-hh-
Confidence 5 2588999999888999999999999999999 888899999999999999999865431 111 11
Q ss_pred CCCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 240 SIVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
+..+++.|+||.++.+| .+.||+++++. +++++++...
T Consensus 176 --g~Divv~S~tK~l~g~~~~~gG~v~~~~~-------~l~~~l~~~~ 214 (369)
T cd00614 176 --GADIVVHSATKYIGGHSDVIAGVVVGSGE-------ALIQRLRFLR 214 (369)
T ss_pred --CCcEEEeccceeccCCCCceEEEEEeCcH-------HHHHHHHHHH
Confidence 12388999999998776 88999997542 3667776654
No 167
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.86 E-value=3.3e-20 Score=167.66 Aligned_cols=189 Identities=15% Similarity=0.148 Sum_probs=138.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCC-CCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213 58 FRTAVEAEDAIVDAVRSGKFNCYATN-SGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVL 135 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl 135 (301)
.+.++.+.+++.+.+.. ..|... .-..++++.+++++ | +++ +.+++++|+++++..++.+++++||+|+
T Consensus 8 ~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~----g--~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl 78 (356)
T cd06451 8 SNVPPRVLKAMNRPMLG---HRSPEFLALMDEILEGLRYVF----Q--TENGLTFLLSGSGTGAMEAALSNLLEPGDKVL 78 (356)
T ss_pred cCCCHHHHHHhCCCccC---CCCHHHHHHHHHHHHHHHHHh----c--CCCCCEEEEecCcHHHHHHHHHHhCCCCCEEE
Confidence 45667787877544321 122221 01345666666666 3 334 3578899899999999999999999999
Q ss_pred EcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 022213 136 LPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL 212 (301)
Q Consensus 136 ~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~ 212 (301)
++.++|.+ +...++..|.+++.++.+. .+.+|++.+++.+++ +++++++++|+||+|.+.+ +++|.++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~ 153 (356)
T cd06451 79 VGVNGVFGDRWADMAERYGADVDVVEKPW--GEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALAKKH 153 (356)
T ss_pred EecCCchhHHHHHHHHHhCCCeEEeecCC--CCCCCHHHHHHHHhccCCCEEEEeccCCCcccccC---HHHHHHHHHhc
Confidence 99888765 4567788899999998754 356899999999986 8899999999999999999 77788889999
Q ss_pred CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 213 RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 213 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
|+++++|++|+. +. .+..+..++. + +++.|++|+++.| .++||+++++
T Consensus 154 ~~~li~D~~~~~---g~-~~~~~~~~~~--d-~~~~s~~K~l~~p-~g~G~l~~~~ 201 (356)
T cd06451 154 DALLIVDAVSSL---GG-EPFRMDEWGV--D-VAYTGSQKALGAP-PGLGPIAFSE 201 (356)
T ss_pred CCEEEEeeehhc---cC-ccccccccCc--c-EEEecCchhccCC-CCcceeEECH
Confidence 999999998863 11 1222222221 2 6677899998765 3689999853
No 168
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.86 E-value=4.6e-20 Score=167.86 Aligned_cols=174 Identities=24% Similarity=0.334 Sum_probs=135.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCc
Q 022213 78 NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQV 153 (301)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~ 153 (301)
.+|+.+ ...+|++.+++++ ..+++++++++++|+..++.+++++||+|+++.+.|.+. ...+...|+
T Consensus 49 ~r~~~p-~~~~le~~la~l~--------g~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~ 119 (380)
T TIGR01325 49 SRYANP-TVAAFEERIAALE--------GAERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGI 119 (380)
T ss_pred ecCCCc-hHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCC
Confidence 345443 4678999999987 235788999999999999999999999999999888653 345667899
Q ss_pred eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC
Q 022213 154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT 233 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~ 233 (301)
++.+++. .|++.+++.+++++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|....+..
T Consensus 120 ~v~~v~~-------~d~~~l~~~i~~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~~---- 185 (380)
T TIGR01325 120 EVSFVDP-------TDLNAWEAAVKPNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQQ---- 185 (380)
T ss_pred EEEEECC-------CCHHHHHHhcCCCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC----
Confidence 9888875 2688999988888999999999999999998 8888888999999999999998654321
Q ss_pred CccccCCCCCEEEEecCcccCCCCccee-EEEEeeCCCCcccchhHHHHHHhhh
Q 022213 234 PMGLFGSIVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 234 ~~~~~~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
++ .++ ..|++.|+||.++.+|.++ |++++ +. +++++++...
T Consensus 186 pl-~~g---~Divv~S~sK~l~g~g~~~gG~vv~-~~-------~~~~~l~~~~ 227 (380)
T TIGR01325 186 PL-KLG---ADVVVYSATKHIDGQGRVMGGVIAG-SE-------ELMAEVAVYL 227 (380)
T ss_pred ch-hhC---CCEEEeeccceecCCCCeEEEEEEe-CH-------HHHHHHHHHH
Confidence 12 122 2388889999999999888 55554 32 3666666543
No 169
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.86 E-value=2.9e-20 Score=169.06 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=132.8
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH---HhcCceEEEeecC
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA---QRKQVEVRHFDLL 161 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~~~~~ 161 (301)
...+|++.+|+++ ..+++++++|++.|+..++.+++++||+|+++.|.|.++...+ ...|+++.+++
T Consensus 54 ~~~~lE~~lA~l~--------g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~-- 123 (385)
T PRK08574 54 TLRPLEEALAKLE--------GGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY-- 123 (385)
T ss_pred cHHHHHHHHHHHh--------CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC--
Confidence 5789999999998 3468888999999999999999999999999999999876555 44577766543
Q ss_pred CCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 162 PERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
++.+.+++.+++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+..... .++ .++
T Consensus 124 ------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~----~~l-~~G- 188 (385)
T PRK08574 124 ------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLY----RPL-RHG- 188 (385)
T ss_pred ------CCHHHHHHhcCccCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC----Chh-hhC-
Confidence 467899999987 8999999999999999999 788899999999999999999653221 122 122
Q ss_pred CCCEEEEecCcccCCCCccee-EEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 241 IVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
..+++.|+||.++.+|-.+ |++++.+. ++.++++....
T Consensus 189 --aDivv~S~sK~l~g~~d~~gG~vi~~~~-------~~~~~~~~~~~ 227 (385)
T PRK08574 189 --ADFVVHSLTKYIAGHNDVVGGVAVAWSG-------EFLEELWEWRR 227 (385)
T ss_pred --CcEEEeeCceeecCCCCceeEEEEECcH-------HHHHHHHHHHH
Confidence 2389999999998887665 66666442 46666655443
No 170
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.86 E-value=1.2e-19 Score=164.24 Aligned_cols=196 Identities=16% Similarity=0.171 Sum_probs=147.9
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
-+++||-+.-... ...-.+|+++.+++.+..+ .|. +..++++++.+++.+.+| .+++++|+|+|+|+
T Consensus 7 ~~~~ina~g~~t~-~g~s~~~~~v~~a~~~~~~-----~~~---~~~~~~~~~~~~~a~~~g----~~~~~~~~g~t~al 73 (363)
T TIGR01437 7 LKKVINASGKMTI-LGVSTVSDEVADAQKRGAQ-----NYF---EIKELVNKTGEYIANLLG----VEDAVIVSSASAGI 73 (363)
T ss_pred CceEEECCcEeec-CCCCCCCHHHHHHHHHHHh-----cCC---CHHHHHHHHHHHHHHhhC----CCeEEEEcCHHHHH
Confidence 3566666443211 1122367899999988865 243 346778888887777554 35899999999999
Q ss_pred HHHHHHhcCCCC---------------EEEEcCCCCcch----HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCc
Q 022213 121 EVILSVLARPGA---------------NVLLPRPGWPYY----EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT 181 (301)
Q Consensus 121 ~~~~~~l~~~gd---------------~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (301)
.+++.+++++|| .|+++.|.|..| ...+...|.++++++. .+.+|++.+++++++++
T Consensus 74 ~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~----~~~~d~~~le~ai~~~t 149 (363)
T TIGR01437 74 AQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY----ANECSAEQLEAAITEKT 149 (363)
T ss_pred HHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC----CCCCCHHHHHHhcChhc
Confidence 999999999998 999999888765 4677788999999876 23599999999999889
Q ss_pred cEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcce
Q 022213 182 AAMV-IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWR 260 (301)
Q Consensus 182 ~~v~-l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~r 260 (301)
++++ +++|+||+|.+.+ +++|+++|++||+++|+|++|.. ....+..++. -++++|++|.+ +|++
T Consensus 150 ~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~------~~~~~~~~g~---D~~~~S~~K~l--~gp~ 215 (363)
T TIGR01437 150 AAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE------DLQKYYRLGA---DLVIYSGAKAI--EGPT 215 (363)
T ss_pred eEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC------chHHHHHcCC---CEEEEeCCccc--CCCc
Confidence 8765 5788999999999 77889999999999999999972 1111112222 27889999974 6778
Q ss_pred eEEEEee
Q 022213 261 FGWLVTN 267 (301)
Q Consensus 261 vG~~~~~ 267 (301)
.|+++++
T Consensus 216 ~G~l~~~ 222 (363)
T TIGR01437 216 SGLVLGK 222 (363)
T ss_pred eEEEEEc
Confidence 9998863
No 171
>PRK06460 hypothetical protein; Provisional
Probab=99.85 E-value=4.5e-20 Score=167.51 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=126.2
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCc----chHHHHHhcCceEEEee
Q 022213 84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP----YYEGIAQRKQVEVRHFD 159 (301)
Q Consensus 84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~----~~~~~~~~~g~~~~~~~ 159 (301)
....+|++.+|+++. .+ ..+++ +++++++..++.+++++||+|+++.|.|. .+...++..|+++..++
T Consensus 45 p~~~~L~~~lA~l~g------~~-~~v~~-~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~ 116 (376)
T PRK06460 45 PTVLELTKKIVELEN------AE-MGVAF-SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASN 116 (376)
T ss_pred ccHHHHHHHHHHHhC------CC-cEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEEC
Confidence 467899999999982 22 34444 55679999999999999999999987654 44566778899988776
Q ss_pred cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
.. +.+.+++.++++++++++++|+||||.+++ +++|+++|+++|+++|+|++|..... ..++ .
T Consensus 117 ~~-------~~~~l~~~~~~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~~~----~~~l---~ 179 (376)
T PRK06460 117 PG-------SDNIIEKAKSKRYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTPIN----QKPL---E 179 (376)
T ss_pred CC-------CHHHHHHhcCCCceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCcccc----CChh---h
Confidence 42 234455555668899999999999999999 56788888999999999999975321 1111 1
Q ss_pred CCCCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 240 SIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
.+..|++.|+||.++.. |.|+||++++ ++++++++....
T Consensus 180 -~~~divv~S~sK~l~G~~~~~~G~~~~~--------~~l~~~l~~~~~ 219 (376)
T PRK06460 180 -LGADIVVHSASKFLAGHNDVIAGLAAGY--------GKLLNVIDQMRR 219 (376)
T ss_pred -cCCCEEEeecceeccCCCCceEEEEecC--------HHHHHHHHHHHH
Confidence 12349999999998643 4789999863 247777766543
No 172
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.85 E-value=1.2e-19 Score=165.22 Aligned_cols=192 Identities=17% Similarity=0.184 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCC
Q 022213 62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPG 140 (301)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~ 140 (301)
+.-.+++.+.+.++.+ .+++ ...+|++++++++. .+++++++|+++|+.+++.++ +++||+|+++.++
T Consensus 14 ~~e~~~~~~~l~~~~~-~~g~--~~~~le~~la~~~g--------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~ 82 (379)
T PRK11658 14 DEELAAVKEVLRSGWI-TTGP--KNQALEQAFCQLTG--------NQHAIAVSSATAGMHITLMALGIGPGDEVITPSLT 82 (379)
T ss_pred HHHHHHHHHHHHcCCc-cCCH--hHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCc
Confidence 4446777777775543 2333 57899999999982 346888999999999999999 7999999999999
Q ss_pred CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220 (301)
Q Consensus 141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~ 220 (301)
|..+...+...|++++.+++++ +++.+|++.+++.+++++++++ |+|++|...+ +++|.++|+++|+++|+|+
T Consensus 83 ~~~~~~~~~~~G~~~v~vd~~~-~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~ 155 (379)
T PRK11658 83 WVSTLNMIVLLGATPVMVDVDR-DTLMVTPEAIEAAITPRTKAII---PVHYAGAPAD---LDAIRAIGERYGIPVIEDA 155 (379)
T ss_pred HHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhcccCCeEEE---EeCCCCCcCC---HHHHHHHHHHcCCeEEEEC
Confidence 9999888899999999999864 3467899999999988888876 6667999988 7888899999999999999
Q ss_pred CCcc-cccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 221 VYGH-LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 221 ~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
+++. ..+.+.. +..+ + +.+.||++...+++.+.|+++..++ ++.++++...
T Consensus 156 a~a~g~~~~~~~---~g~~---g--~~~~Sf~~~K~l~~g~GG~v~~~~~-------~~~~~~~~~~ 207 (379)
T PRK11658 156 AHAVGTYYKGRH---IGAR---G--TAIFSFHAIKNITCAEGGLVVTDDD-------ELADRLRSLK 207 (379)
T ss_pred CCccCCeECCee---cCCC---C--CEEEeCCCCCcCcccCceEEEECCH-------HHHHHHHHHH
Confidence 9985 3333221 2221 2 2345666555567778898886543 4677776654
No 173
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.85 E-value=1.2e-19 Score=167.09 Aligned_cols=159 Identities=17% Similarity=0.205 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~ 160 (301)
....|.+.+|++. ..+..++++|++.|+..++.+++++||+|+++.+.|.+. ...++..|+++++++.
T Consensus 65 ~~~~Le~~lA~le--------g~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 65 TTDVFEKRIAALE--------GGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred hHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC
Confidence 3567888888887 346889999999999999999999999999999998753 3445678999998875
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
.|++.+++++++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..- ....++ .++
T Consensus 137 -------~d~e~l~~ai~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~----~~~~pl-~~g- 200 (431)
T PRK08248 137 -------SDPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP----YLLRPI-EHG- 200 (431)
T ss_pred -------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc----ccCChh-HcC-
Confidence 4789999999888999999999999999999 778889999999999999998731 112222 222
Q ss_pred CCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 241 IVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
..+++.|++|.++.+|.++|++++.+.
T Consensus 201 --aDivv~S~tK~lgg~g~~~Gg~v~~~~ 227 (431)
T PRK08248 201 --ADIVVHSATKFIGGHGTSIGGVIVDSG 227 (431)
T ss_pred --CCEEEEcCccccCCCCCceEEEEEeCC
Confidence 238899999999999999999887543
No 174
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.85 E-value=4.9e-20 Score=169.76 Aligned_cols=225 Identities=18% Similarity=0.161 Sum_probs=153.2
Q ss_pred CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
.++..+|+|..|.... .+. .++.+.+++.+++... ..|....+..++...+++.+.+.++ .+.+++++++|++
T Consensus 33 ~dG~~~id~~~~~~~~--~lG~~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgs 106 (413)
T cd00610 33 VDGNRYLDFLSGIGVL--NLGHNHPEVVEALKEQLAKL--THFSLGFFYNEPAVELAELLLALTP--EGLDKVFFVNSGT 106 (413)
T ss_pred CCCCEEEEcCccHHhh--ccCCCCHHHHHHHHHHHHhC--cCccCcccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHH
Confidence 4688999999874321 133 6788999999988643 3454433455666666666666544 2578999999999
Q ss_pred HHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcC-------------ceEEEeecCCC----CCCCCCHHHHHhhcc
Q 022213 118 QAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQ-------------VEVRHFDLLPE----RNWEVDLDAVEALAD 178 (301)
Q Consensus 118 ~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~----~~~~~~~~~l~~~~~ 178 (301)
+|+..+++.+. .++|+|++.+++|+++.......+ .++..++.+.. ..+..|++.+++.++
T Consensus 107 ea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 186 (413)
T cd00610 107 EAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALE 186 (413)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHh
Confidence 99999999884 578999999999998644333322 12444544311 123448889998886
Q ss_pred c--CccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC
Q 022213 179 K--NTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW 254 (301)
Q Consensus 179 ~--~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~ 254 (301)
+ +...++++.| ++++|.++ +.+.+++|.++|++|++++|+||+|..+...+.. .....++...+ +.|+||.+
T Consensus 187 ~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~-~~~~~~~~~~d---~~t~sK~l 262 (413)
T cd00610 187 EHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKM-FAFEHFGVEPD---IVTLGKGL 262 (413)
T ss_pred cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcch-hhHhhcCCCCC---eEEEcccc
Confidence 5 2344555555 66779876 6778999999999999999999999976443321 11222222223 34889998
Q ss_pred CCCcceeEEEEeeCCCCcccchhHHHHH
Q 022213 255 LVPGWRFGWLVTNDPNGIFQKSGIIDSI 282 (301)
Q Consensus 255 ~~~G~rvG~~~~~~~~~~~~~~~~~~~~ 282 (301)
+. |+|+||++++. ++++.+
T Consensus 263 ~~-g~~~g~~~~~~--------~~~~~~ 281 (413)
T cd00610 263 GG-GLPLGAVLGRE--------EIMDAF 281 (413)
T ss_pred cC-ccccEEEEEcH--------HHHHhh
Confidence 76 89999998742 466665
No 175
>PRK14012 cysteine desulfurase; Provisional
Probab=99.84 E-value=3.6e-19 Score=163.56 Aligned_cols=200 Identities=17% Similarity=0.195 Sum_probs=147.5
Q ss_pred eeccCCCCCCCCCCCChHHHHHHHHHHHh--cCC--CCCCCC------CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 45 VPLGYGDPTAFPCFRTAVEAEDAIVDAVR--SGK--FNCYAT------NSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 45 i~l~~g~p~~~p~~~~~~~~~~~~~~~~~--~~~--~~~Y~~------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
|-|+.+... ++|+.+.+++.+.+. ... ...... .....++|+.+++++ +.++++|++++
T Consensus 5 iyld~a~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~------g~~~~~v~~~~ 73 (404)
T PRK14012 5 IYLDYSATT-----PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI------GADPREIVFTS 73 (404)
T ss_pred EEecCcCCC-----CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHc------CcCcCeEEEeC
Confidence 566666532 456778888887764 111 000000 112456778888887 45678899999
Q ss_pred CHHHHHHHHHHHhc----CCCCEEEEcCCCCcchHHHH---HhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEc
Q 022213 115 GCKQAVEVILSVLA----RPGANVLLPRPGWPYYEGIA---QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII 187 (301)
Q Consensus 115 g~~~al~~~~~~l~----~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~ 187 (301)
|+|+++..++.++. ++||+|+++.+.|+++...+ +..|++++.++.++ ++.+|++.+++.+++++++++++
T Consensus 74 g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~~ 151 (404)
T PRK14012 74 GATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS--NGIIDLEKLEAAMRDDTILVSIM 151 (404)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEEE
Confidence 99999999988774 68999999999998764333 44699999988753 45689999999999899999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213 188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+++||||.+++ +++|.++|+++|+++|+|++++.- ..+..+...+.+ +++.|++|.++ |+ ++|+++++
T Consensus 152 ~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~g----~~~~~~~~~~~D---~~~~s~~K~~g-p~-g~G~l~~~ 219 (404)
T PRK14012 152 HVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSVG----KVPIDLSKLKVD---LMSFSAHKIYG-PK-GIGALYVR 219 (404)
T ss_pred CcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhcC----CcccCcccCCCC---EEEEehhhccC-CC-ceEEEEEe
Confidence 99999999998 788899999999999999999752 222223322222 77779999754 54 69999887
Q ss_pred CC
Q 022213 268 DP 269 (301)
Q Consensus 268 ~~ 269 (301)
+.
T Consensus 220 ~~ 221 (404)
T PRK14012 220 RK 221 (404)
T ss_pred cC
Confidence 64
No 176
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.84 E-value=3.7e-20 Score=162.98 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERN 165 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~ 165 (301)
+.++++.+|+++. . .+.+++++|+++++..++.+++++||+|+++.++|.+....+...|.++++++......
T Consensus 61 i~~~~~~~A~~~g------a-~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~ 133 (294)
T cd00615 61 IKEAQELAARAFG------A-KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPY 133 (294)
T ss_pred HHHHHHHHHHHhC------C-CCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcc
Confidence 5788899999882 2 23455599999999999999999999999999999998888888999999887654433
Q ss_pred ----CCCCHHHHHhhccc--CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCcccc
Q 022213 166 ----WEVDLDAVEALADK--NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLF 238 (301)
Q Consensus 166 ----~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~ 238 (301)
..++++.+++.+++ +++++++++| |++|.+++ +++|+++|+++|+++|+|++|+. +.|.+..+.....
T Consensus 134 ~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~- 208 (294)
T cd00615 134 YGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAM- 208 (294)
T ss_pred cCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhh-
Confidence 36899999998864 5788899998 78999998 88999999999999999999975 3343321211111
Q ss_pred CCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213 239 GSIVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
.+..+++.|++|+ ++|++.|+++..
T Consensus 209 --~~~div~~S~hK~--l~g~~~~~~l~~ 233 (294)
T cd00615 209 --AGADIVVQSTHKT--LPALTQGSMIHV 233 (294)
T ss_pred --cCCcEEEEchhcc--cchHhHHHHHHh
Confidence 2345999999998 478887666543
No 177
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.84 E-value=2.5e-19 Score=164.53 Aligned_cols=213 Identities=18% Similarity=0.155 Sum_probs=148.1
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC------CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN------CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
++++++|+..+. -.+..++.+.+++.++++..... .|+......+|++.+++++ + .+..++++
T Consensus 44 ~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~----g----~~~~l~~~ 112 (402)
T TIGR01821 44 AKDVTVWCSNDY---LGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLH----G----KESALVFT 112 (402)
T ss_pred CeeEEEeEccCc---CCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHh----C----CCeEEEEC
Confidence 367899998884 35778889999999988742210 1222223456777777776 2 24566677
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcC
Q 022213 115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIIN 188 (301)
Q Consensus 115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~ 188 (301)
++++++..++..+.. +++.|+.....|......+...|.++..++. .|.+.+++.++ .+++++++++
T Consensus 113 sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~e~ 185 (402)
T TIGR01821 113 SGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIAFES 185 (402)
T ss_pred chHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEEEcC
Confidence 779999999988875 6777777766666666666777777655432 36667776664 2567889999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEee
Q 022213 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
|+||+|.+.+ +++|.++|++||+++|+||+|....++..........+. ....|+++||||.|+++| ||++++
T Consensus 186 ~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~ 259 (402)
T TIGR01821 186 VYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAAS 259 (402)
T ss_pred CCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ceeecC
Confidence 9999999999 888889999999999999999854443211111111111 123588899999999988 998864
Q ss_pred CCCCcccchhHHHHHHhh
Q 022213 268 DPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ 285 (301)
. ++++.++..
T Consensus 260 ~--------~~~~~l~~~ 269 (402)
T TIGR01821 260 R--------KLIDAIRSY 269 (402)
T ss_pred H--------HHHHHHHHh
Confidence 3 477777654
No 178
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.84 E-value=1.5e-19 Score=165.03 Aligned_cols=193 Identities=15% Similarity=0.141 Sum_probs=142.8
Q ss_pred CChHHHHHHHHHHHhcC-----CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-----
Q 022213 59 RTAVEAEDAIVDAVRSG-----KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA----- 128 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----- 128 (301)
++++.+.+++.+.+... ..+.|+. .+...+++++++++.. .+. .++++|++|+|+++++..+++++.
T Consensus 10 ~~~~~v~~~~~~~~~~~~~n~~~~~~~~~-~~~~~l~~a~~~~~~~-~~~-~~~~~i~~t~g~teal~~~~~~~~~~~~~ 86 (382)
T TIGR03403 10 MLDPKVKELMDPFFCDIYGNPNSLHQFGT-ATHPAIAEALDKLYKG-INA-RDLDDIIITSCATESNNWVLKGVYFDEIL 86 (382)
T ss_pred CCCHHHHHHHHHHHHhcCcCCccccHHHH-HHHHHHHHHHHHHHHH-cCc-CCCCeEEEeCCHHHHHHHHHHHHHHhhcc
Confidence 34567888888877531 1223332 3456788888888753 221 267899999999999999999762
Q ss_pred CC-CCEEEEcCCCCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHH
Q 022213 129 RP-GANVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQE 204 (301)
Q Consensus 129 ~~-gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~ 204 (301)
++ +|+|+++...|+++. ..++..|.+++.++++. ++.+|++.+++.++++++++++++|+||||.+++ +++
T Consensus 87 ~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~~~ 161 (382)
T TIGR03403 87 KGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE--QGTITAEQVREAITEKTALVSVMWANNETGMIFP---IKE 161 (382)
T ss_pred cCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCC--CCCCCHHHHHHhcccCCeEEEEEcccCCCccccC---HHH
Confidence 45 478999987776553 34566899999998753 3468999999999888999999999999999999 778
Q ss_pred HHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 205 IAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 205 i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
|.++|+++|+++++|+++... ..+..+..+.- + +++.|++|.++.+| +|++++..
T Consensus 162 I~~la~~~g~~~ivD~a~~~g----~~~~~~~~~~~--D-~~~~s~~K~~gp~G--~g~l~vr~ 216 (382)
T TIGR03403 162 IGEICKERGVLFHTDAVQAIG----KIPVDVQKAGV--D-FLSFSAHKFHGPKG--VGGLYIRK 216 (382)
T ss_pred HHHHHHHcCCEEEEechhhcC----CCccCccccCC--C-EEEEcchhhCCCCc--eEEEEECC
Confidence 888899999999999998742 12222222222 2 88899999887777 57777654
No 179
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=8.3e-19 Score=159.57 Aligned_cols=204 Identities=23% Similarity=0.278 Sum_probs=160.6
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCC--CCCCCC----CCHHHHHHHHHHHhhhCCCCCC-CCCEE
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFN--CYATNS----GIPPARRAIADYLSRDLPYKLS-ADDVY 111 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~--~Y~~~~----g~~~lr~~ia~~l~~~~~~~~~-~~~i~ 111 (301)
+.+++.|..+.- -..|..+.+++.+..... ..+ .|.... -+.+.|+.+++|+ +.+ .++|+
T Consensus 20 ~~~~vylD~aa~-----~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~------~a~~~~eIv 88 (405)
T COG0520 20 GKPLVYLDNAAT-----SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFL------NADSSDEIV 88 (405)
T ss_pred CCCeEEecCccc-----ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHh------CCCCCCeEE
Confidence 567788877753 235788889988876521 111 122111 2567889999998 456 48999
Q ss_pred EcCCHHHHHHHHHHHh---cCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213 112 VTLGCKQAVEVILSVL---ARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM 184 (301)
Q Consensus 112 ~t~g~~~al~~~~~~l---~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 184 (301)
+|.|+|++++.+..++ .++||+|++..-.|++ |....+..|++++.++++ ++..++.+.++..+++++|++
T Consensus 89 ft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~--~~g~~~~~~~~~~i~~~Tklv 166 (405)
T COG0520 89 FTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD--DDGLLDLDALEKLITPKTKLV 166 (405)
T ss_pred EeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC--CCCCcCHHHHHHhcCCCceEE
Confidence 9999999999999999 5899999999999874 456666779999999986 344699999999999999999
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213 185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL 264 (301)
Q Consensus 185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~ 264 (301)
.+++.+|.||.+.+ +++|+++|+++|+++++|.+++. +..+..+..++-+ ++..|..|+++.| ..+|.+
T Consensus 167 ais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~----~h~~idv~~l~~D---f~afsgHKwl~gP-~GiGvL 235 (405)
T COG0520 167 ALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAA----GHLPIDVQELGCD---FLAFSGHKWLLGP-TGIGVL 235 (405)
T ss_pred EEECccccccccch---HHHHHHHHHHcCCEEEEECcccc----CccCCCchhcCCC---EEEEcccccccCC-CceEEE
Confidence 99999999999999 99999999999999999999987 4445555555544 8999999976666 347888
Q ss_pred EeeC
Q 022213 265 VTND 268 (301)
Q Consensus 265 ~~~~ 268 (301)
.++.
T Consensus 236 y~r~ 239 (405)
T COG0520 236 YVRK 239 (405)
T ss_pred EEch
Confidence 7744
No 180
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.83 E-value=1.3e-19 Score=164.00 Aligned_cols=173 Identities=18% Similarity=0.264 Sum_probs=129.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcC
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQ 152 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g 152 (301)
+..|+. .....|++++|++. .++.++++++++++..++.+++++||+|+++.|.|..+...+ +..|
T Consensus 45 y~ry~~-p~~~~Le~~lA~l~---------~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G 114 (366)
T PRK07582 45 YGRASN-PTWRALEAALGELE---------GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLG 114 (366)
T ss_pred eECCCC-ccHHHHHHHHHHHc---------CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCe
Confidence 445655 46789999999986 245666677778999999999999999999999998875543 4578
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~ 232 (301)
+++++++.... .+ .+.++++.+++++|+||||.+.+ +++|+++|+++|+++|+|++|.... +..
T Consensus 115 ~~v~~v~~~~~------~~----~~~~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~--~~~- 178 (366)
T PRK07582 115 VTVREAPTAGM------AE----AALAGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATPL--GQR- 178 (366)
T ss_pred EEEEEECCCCh------HH----HhccCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCcc--ccC-
Confidence 99988876321 11 22357889999999999998887 8999999999999999999996422 111
Q ss_pred CCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 233 TPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 233 ~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
++. +..+ ++++|+||.++. +|+|+||++++++ +++.+++....
T Consensus 179 -p~~-~g~D---ivv~S~sK~l~G~~g~~~G~v~~~~~-------~l~~~l~~~~~ 222 (366)
T PRK07582 179 -PLE-LGAD---LVVASDTKALTGHSDLLLGYVAGRDP-------ELMAAVERWRL 222 (366)
T ss_pred -chh-cCCc---EEEecccccccCCCCeeEEEEEcCcH-------HHHHHHHHHHH
Confidence 221 2222 788999999855 6899999987542 46676665543
No 181
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.83 E-value=4.5e-19 Score=160.14 Aligned_cols=191 Identities=17% Similarity=0.161 Sum_probs=140.5
Q ss_pred CChHHHHHHHHHHHhcCC--CCCCCCC------CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC-
Q 022213 59 RTAVEAEDAIVDAVRSGK--FNCYATN------SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR- 129 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~--~~~Y~~~------~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~- 129 (301)
++|+.+.+++.+.+.... ...+... .-+.++|+.+++++ ++++++|++|+|++++++.++.++..
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~~~g~t~a~~~~l~~l~~~ 82 (353)
T TIGR03235 9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEAL------GADTEEVIFTSGATESNNLAILGLARA 82 (353)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence 466788899888774311 0010000 01356778888877 45778999999999999999998863
Q ss_pred ---CC-CEEEEcCCCCcch---HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213 130 ---PG-ANVLLPRPGWPYY---EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL 202 (301)
Q Consensus 130 ---~g-d~Vl~~~p~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l 202 (301)
+| +.|++....|+.+ ...++..|++++.+++.. ++.+|++.+++.++++++++++++++||||.+++ +
T Consensus 83 ~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~ 157 (353)
T TIGR03235 83 GEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE--SGRIDVDELADAIRPDTLLVSIMHVNNETGSIQP---I 157 (353)
T ss_pred cccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhCCCCCEEEEEEcccCCceeccC---H
Confidence 56 7788887777654 334456799999988753 4568999999999888899999999999999999 8
Q ss_pred HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
++|+++|+++|+++++|++++... .+..+....- -+++.|++|.++.+| +|++++++.
T Consensus 158 ~~I~~l~~~~~~~~ivD~a~~~g~----~~~~~~~~~~---D~~~~s~~K~~gp~g--~g~l~~~~~ 215 (353)
T TIGR03235 158 REIAEVLEAHEAFFHVDAAQVVGK----ITVDLSADRI---DLISCSGHKIYGPKG--IGALVIRKR 215 (353)
T ss_pred HHHHHHHHHcCCEEEEEchhhcCC----ccccccccCC---CEEEeehhhcCCCCc--eEEEEEccC
Confidence 899999999999999999987522 2222222222 277779999876556 899888653
No 182
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.83 E-value=4.8e-19 Score=162.96 Aligned_cols=212 Identities=19% Similarity=0.195 Sum_probs=145.8
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF------NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
++++++|+..|.. .+..++.+.+++.++++.... ..|++.....+|++.+|+++ + .+..++.+
T Consensus 45 ~~~~~~~~s~dyl---gl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~----g----~~~~~~~~ 113 (407)
T PRK09064 45 EREVTVWCSNDYL---GMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH----G----KEAALVFT 113 (407)
T ss_pred CceEEEEECCCCc---CCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh----C----CCcEEEEC
Confidence 4678999998853 577788999999888764221 11233334567778888776 2 23455555
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcC
Q 022213 115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIIN 188 (301)
Q Consensus 115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~ 188 (301)
+++++...++..+.. +++.|+.....|......+...+.+...++. .|++.+++.++ ++++++++++
T Consensus 114 sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~ 186 (407)
T PRK09064 114 SGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAFES 186 (407)
T ss_pred cHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEEeC
Confidence 566788788887764 7777777766666665666667776655442 36777777664 3578899999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc-cCC-CCCEEEEecCcccCCCCcceeEEEEe
Q 022213 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL-FGS-IVPVITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~-~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
++||+|.+.+ +++|.++|+++|+++|+||+|....++... ..+.. .+. ....|+++||||.|+++| ||+++
T Consensus 187 v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g-~g~~~~~~~~~~~div~~t~sKa~g~~G---G~~~~ 259 (407)
T PRK09064 187 VYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRG-GGIAERDGLMDRIDIIEGTLAKAFGVMG---GYIAG 259 (407)
T ss_pred CCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCC-CChHHhcCCCCCCeEEEEecchhhhccC---ceEec
Confidence 9999999998 888888899999999999999854443211 11111 111 123688999999999888 99887
Q ss_pred eCCCCcccchhHHHHHHhh
Q 022213 267 NDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~ 285 (301)
+. ++++.++..
T Consensus 260 ~~--------~~~~~l~~~ 270 (407)
T PRK09064 260 SA--------ALVDAVRSY 270 (407)
T ss_pred CH--------HHHHHHHHh
Confidence 33 477777654
No 183
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.83 E-value=5.9e-19 Score=162.06 Aligned_cols=201 Identities=16% Similarity=0.175 Sum_probs=148.1
Q ss_pred eeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCC--CC------CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 44 VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCY--AT------NSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 44 ~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y--~~------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
.+.|+.+.+. +.++.+.+++.+.+.......+ .. ...+.++|+.+++++ +.++++|++|+|
T Consensus 4 ~~yld~aa~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~~~g 72 (402)
T TIGR02006 4 PIYLDYAATT-----PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELI------GADSREIVFTSG 72 (402)
T ss_pred cEEeeCCcCC-----CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCC
Confidence 3677777542 4567888888777642211001 00 112456677788877 457789999999
Q ss_pred HHHHHHHHHHHhc----CCCCEEEEcCCCCcchHHH---HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcC
Q 022213 116 CKQAVEVILSVLA----RPGANVLLPRPGWPYYEGI---AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN 188 (301)
Q Consensus 116 ~~~al~~~~~~l~----~~gd~Vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~ 188 (301)
++++++.++.++. ++||+|+++.+.|.++... ++..|.+++.+++++ ++.+|++.+++.++++++++++++
T Consensus 73 ~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~v~~ 150 (402)
T TIGR02006 73 ATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS--NGLIDLEELKAAIRDDTILVSIMH 150 (402)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEEEC
Confidence 9999999988764 6899999999999875433 345699999988753 456899999999988899999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
++||||.+.+ +++|.++|+++|+++++|++++... .+..+..+.. -+++.|++|.++.+| +|++++++
T Consensus 151 ~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~----~~~~~~~~~~---D~~~~s~~K~~gp~G--~G~l~~~~ 218 (402)
T TIGR02006 151 VNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSVGK----IPINVNELKV---DLMSISGHKIYGPKG--IGALYVRR 218 (402)
T ss_pred CCcCceeccc---HHHHHHHHHHcCCEEEEEcchhcCC----cccCccccCC---CEEEEehhhhcCCCc--eEEEEEcc
Confidence 9999999998 8888999999999999999997522 2222322222 288889999866446 88888765
Q ss_pred C
Q 022213 269 P 269 (301)
Q Consensus 269 ~ 269 (301)
.
T Consensus 219 ~ 219 (402)
T TIGR02006 219 K 219 (402)
T ss_pred C
Confidence 3
No 184
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.83 E-value=4.4e-19 Score=160.96 Aligned_cols=181 Identities=15% Similarity=0.178 Sum_probs=135.0
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCC--CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213 58 FRTAVEAEDAIVDAVRSGKFNCYATN--SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL 135 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl 135 (301)
++.++++.++...... ....|+.. .+...|++.+|++. ..+++++++|+++|+..++.+++++||+|+
T Consensus 35 ~~~~~~~~~~~~~~~~--~~~~Y~r~~npt~~~Le~~iA~le--------~~~~~~~~~sG~~Ai~~~l~all~~GD~Vv 104 (394)
T PRK09028 35 FDTVAEMRHAAKNRAN--GEMFYGRRGTPTHFAFQAAIVELE--------GGAGTALYPSGAAAISNALLSFLKAGDHLL 104 (394)
T ss_pred cCCHHHHHHHhccCcc--CCceecCCCCchHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 5555555554432211 11246552 24569999999886 235799999999999999999999999999
Q ss_pred EcCCCCcchHHH----HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 022213 136 LPRPGWPYYEGI----AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK 211 (301)
Q Consensus 136 ~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~ 211 (301)
+++|.|.++... +...|+++.+++. .+.+.+++++++++++|++++|+||||.+.+ +++|+++|++
T Consensus 105 v~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~-------~~~e~l~~~l~~~TklV~lespsNPtg~v~d---l~~I~~la~~ 174 (394)
T PRK09028 105 MVDSCYEPTRDLCDKILKGFGIETTYYDP-------MIGEGIRELIRPNTKVLFLESPGSITMEVQD---VPTLSRIAHE 174 (394)
T ss_pred EECCCcHHHHHHHHHhhhhcceEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCcHHH---HHHHHHHHHH
Confidence 999999876543 3557888777653 2457889888889999999999999988866 9999999999
Q ss_pred CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC-cceeEEEEe
Q 022213 212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVT 266 (301)
Q Consensus 212 ~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~ 266 (301)
+|+++|+|++|+.... ..++ .++-+ +++.|.+|.++.+ +...|+++.
T Consensus 175 ~g~~lvvD~t~a~p~~----~~Pl-~~GaD---ivv~S~tK~l~Gh~d~~~G~~~~ 222 (394)
T PRK09028 175 HDIVVMLDNTWASPIN----SRPF-EMGVD---ISIQAATKYIVGHSDVMLGTATA 222 (394)
T ss_pred cCCEEEEECCcccccc----CCcc-ccCce---EEEEeCCeEecCCCCEEEEEEEC
Confidence 9999999999986321 1222 22222 9999999998665 677776653
No 185
>PRK05939 hypothetical protein; Provisional
Probab=99.83 E-value=3.9e-19 Score=162.15 Aligned_cols=156 Identities=20% Similarity=0.203 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH---HHHHhcCceEEEeecCCC
Q 022213 87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPE 163 (301)
Q Consensus 87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~ 163 (301)
..|++.++++. ..+..+++++++.|+..++.+++++||+|+++++.|..+. ..+...|+++++++.
T Consensus 50 ~~lE~~la~le--------g~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~--- 118 (397)
T PRK05939 50 AALEAKITKME--------GGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDA--- 118 (397)
T ss_pred HHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECC---
Confidence 38889999887 2344666667799999999999999999999999997643 345678999988875
Q ss_pred CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213 164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP 243 (301)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~ 243 (301)
.|++++++.+++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..... +.+. .+ +.
T Consensus 119 ----~d~e~l~~~l~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~t~a~~~~----~~~~-~~---ga 183 (397)
T PRK05939 119 ----TDVQNVAAAIRPNTRMVFVETIANPGTQVAD---LAGIGALCRERGLLYVVDNTMTSPWL----FRPK-DV---GA 183 (397)
T ss_pred ----CCHHHHHHhCCCCCeEEEEECCCCCCCCHHh---HHHHHHHHHHcCCEEEEECCcccccc----cCcc-cc---CC
Confidence 3789999999989999999999999999976 99999999999999999999864211 1111 11 23
Q ss_pred EEEEecCcccCCCCcceeEEEEeeC
Q 022213 244 VITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 244 vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
.+++.|+||.++.+|.++|++++.+
T Consensus 184 Divv~S~sK~~~g~g~~igg~v~~~ 208 (397)
T PRK05939 184 SLVINSLSKYIAGHGNALGGAVTDT 208 (397)
T ss_pred EEEEecCeecccCCCCeEEEEEecC
Confidence 4999999999999999999998743
No 186
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.83 E-value=5.4e-19 Score=142.19 Aligned_cols=166 Identities=17% Similarity=0.108 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH-HHHHhcCceEEEeecCCCC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE-GIAQRKQVEVRHFDLLPER 164 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~ 164 (301)
+.++++.+++++. .+.+++++++|+++++..+++++.+++++|+++.+.|.+.. ..+...|.++..++.+...
T Consensus 2 ~~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 75 (170)
T cd01494 2 LEELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAG 75 (170)
T ss_pred HHHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCC
Confidence 3578899999983 46789999999999999999999988999999999999887 7888899999999876544
Q ss_pred CCCCCHHHHHhhc-ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213 165 NWEVDLDAVEALA-DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP 243 (301)
Q Consensus 165 ~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~ 243 (301)
....+.+.+++.. ..+++.+++++++|++|...+ .++|.++|+++|+++|+|++|..+...... ... .....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~-~~~---~~~~~ 148 (170)
T cd01494 76 YGGLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG-VLI---PEGGA 148 (170)
T ss_pred ccchhhhhhhhccccCceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc-ccc---ccccC
Confidence 3333333554433 457788899999999999998 588888899999999999999987764321 011 11123
Q ss_pred EEEEecCcccCCCCcceeEEEEe
Q 022213 244 VITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 244 vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
.+++.|++|.++. .|+|++++
T Consensus 149 d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 149 DVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred CEEEEEcccccCC--CceEEEEe
Confidence 4888999999766 67999976
No 187
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.83 E-value=1.4e-18 Score=158.15 Aligned_cols=191 Identities=23% Similarity=0.333 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCC
Q 022213 63 EAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPGW 141 (301)
Q Consensus 63 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~ 141 (301)
.-.+++.+.+..+.. |+ ...+++++++++.+.++ .+++++++|+++|+.+++.++ +++||+|+++.|+|
T Consensus 12 ~~~~~~~~~l~~~~~--~g----~~~~~~~~e~~la~~~g----~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~ 81 (375)
T PRK11706 12 TELDYIQQAMSSGKL--CG----DGGFTRRCQQWLEQRFG----SAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTF 81 (375)
T ss_pred HHHHHHHHHHHcCCc--cC----CCHHHHHHHHHHHHHhC----CCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCc
Confidence 345667777764432 32 23556666666655433 468999999999999988876 68999999999999
Q ss_pred cchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccC
Q 022213 142 PYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEV 221 (301)
Q Consensus 142 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~ 221 (301)
..+...+...|+++++++++++ ++.+|++++++.+++++++++++ |++|...+ +++|.++|+++|+++|+|++
T Consensus 82 ~~~~~~~~~~G~~~v~~d~d~~-~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~---~~~i~~la~~~~i~vIeD~a 154 (375)
T PRK11706 82 VSTANAFVLRGAKIVFVDIRPD-TMNIDETLIEAAITPKTRAIVPV---HYAGVACE---MDTIMALAKKHNLFVVEDAA 154 (375)
T ss_pred HHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhcCCCCeEEEEe---CCCCCccC---HHHHHHHHHHcCCEEEEECc
Confidence 9999999999999999998653 57799999999998888888865 46898877 78888889999999999999
Q ss_pred Ccccc-cCCCCCCCccccCCCCCEEEEecCc--ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 222 YGHLT-FGSIPYTPMGLFGSIVPVITLGSIS--KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 222 y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~S--K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
|+... +.+. ++..+. .+.+.||+ |.++ +|.+.++++. + +++.++++...
T Consensus 155 ~a~g~~~~~~---~~g~~~----~~~~~Sf~~~K~l~-~g~gG~~~~~-~-------~~~~~~~~~~~ 206 (375)
T PRK11706 155 QGVMSTYKGR---ALGTIG----HIGCFSFHETKNYT-AGEGGALLIN-D-------PALIERAEIIR 206 (375)
T ss_pred cccccccCCe---eeecCc----CEEEEeCCCCcccc-ccCCeEEEEC-C-------HHHHHHHHHHH
Confidence 99866 3332 222222 14444554 9964 5878777763 2 24666665554
No 188
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.82 E-value=5.7e-19 Score=162.37 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=127.2
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHh----cCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQR----KQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~ 160 (301)
....|++.+|++. ..+..++++++++|+..++.+++++||+|+++.+.|.+....+.. .|+++.+++.
T Consensus 59 t~~~Le~~lA~l~--------g~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~ 130 (425)
T PRK06084 59 TNDVLEQRVAALE--------GGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH 130 (425)
T ss_pred hHHHHHHHHHHHh--------CCCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC
Confidence 4568888899887 235677888899999999999999999999999999865444432 4666666543
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
.|++.+++++++++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+..... .++ .+..
T Consensus 131 -------~d~e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~----~p~-~~ga 195 (425)
T PRK06084 131 -------DDIAALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLC----RPF-EHGA 195 (425)
T ss_pred -------CCHHHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC----Chh-hcCC
Confidence 4889999999888999999999999999999 888899999999999999999853321 122 1222
Q ss_pred CCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 241 IVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
-|++.|+||.++.+|.++|.+++.+
T Consensus 196 ---Divv~S~tK~l~G~g~~~gG~v~~~ 220 (425)
T PRK06084 196 ---DIVVHSLTKYIGGHGTSIGGIVVDS 220 (425)
T ss_pred ---CEEEECchhcccccccceeEEEEeC
Confidence 2999999999999999999988754
No 189
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.82 E-value=7.6e-19 Score=159.63 Aligned_cols=175 Identities=22% Similarity=0.243 Sum_probs=132.5
Q ss_pred CCCCCC--CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcC
Q 022213 79 CYATNS--GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQ 152 (301)
Q Consensus 79 ~Y~~~~--g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g 152 (301)
.|.... ...+|++.+++++ ..++++++++++.++..++. ++++||+|+++.+.|.++.. .+...|
T Consensus 40 ~Y~r~~~p~~~~le~~la~l~--------g~~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G 110 (378)
T TIGR01329 40 DYTRSGNPTRTALESLLAKLD--------KADRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSG 110 (378)
T ss_pred ccCCCCChHHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcC
Confidence 465431 1356777777766 23677778888889988776 77999999999999987644 345689
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~ 232 (301)
+++++++. .|++.+++.++++++++++++|+||+|.+.+ +++|+++|+++|+++|+|++|.... ..
T Consensus 111 ~~v~~vd~-------~d~~~le~~i~~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~----~~ 176 (378)
T TIGR01329 111 VVVVHVDT-------TDLDKVKAALGPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPL----LC 176 (378)
T ss_pred cEEEEeCC-------CCHHHHHHhcCcCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccc----cC
Confidence 99998875 3789999999888999999999999999998 9999999999999999999986422 12
Q ss_pred CCccccCCCCCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 233 TPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 233 ~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
.++. +..+ ++++|++|.++.+ |.+.|++++++. ++.++++....
T Consensus 177 ~~l~-~g~D---i~v~S~tK~l~G~~~~~~G~v~~~~~-------~~~~~~~~~~~ 221 (378)
T TIGR01329 177 NPLE-LGAD---IVYHSATKFLAGHSDVMAGVLAVKGE-------EIAKKVYFLQN 221 (378)
T ss_pred Chhh-cCCc---EEEEecceeccCCccceeEEEEeCcH-------HHHHHHHHHHH
Confidence 2232 2222 8999999987764 588999987543 35566655443
No 190
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.82 E-value=8.5e-20 Score=164.18 Aligned_cols=197 Identities=16% Similarity=0.093 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC-----------
Q 022213 61 AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR----------- 129 (301)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~----------- 129 (301)
+..+.+.+...+.... ..|....+..++++++++++.+.+|.+...+++++|+|+|+++..++.+++.
T Consensus 12 ~~~~~~~~~~~~n~~~-~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~ 90 (345)
T cd06450 12 PALLLEMLTSAKNAID-FTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGG 90 (345)
T ss_pred HHHHHHHHHHhcCCCC-cccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccc
Confidence 3455566665555433 3588878899999999999988777654556899999999999999998853
Q ss_pred -CC--CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHH
Q 022213 130 -PG--ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYH 200 (301)
Q Consensus 130 -~g--d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~ 200 (301)
++ +.|+++.++|..+...++..|.+++.++++++ +.+|++.|++.+++ +++.+++++|+||||.+.+
T Consensus 91 ~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~-- 166 (345)
T cd06450 91 RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP-- 166 (345)
T ss_pred cccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC--
Confidence 23 47888999999988888888999999987543 36999999999876 6778888999999999977
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCE-EEEecCcccCCCCcceeEEEEe
Q 022213 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV-ITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~v-i~~~s~SK~~~~~G~rvG~~~~ 266 (301)
+++|+++|+++|+++++|++|+.+.+........ .....++ .+..|++|. +.++.++|++++
T Consensus 167 -~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~-l~~p~g~g~~~~ 229 (345)
T cd06450 167 -LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL--DFGIERVDSISVDPHKY-GLVPLGCSAVLV 229 (345)
T ss_pred -HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH--hcCccccCEEEEchhHh-hCCCcchHHHHH
Confidence 8889999999999999999999876432111110 0111122 566799997 456678888754
No 191
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.82 E-value=1.2e-18 Score=158.77 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=139.2
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCC---------CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-
Q 022213 59 RTAVEAEDAIVDAVRSGKFNCYATNS---------GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA- 128 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~---------g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~- 128 (301)
++|+.+.+++.+.+.... .++... -+.++|+.+++++ +.++++|++|+|+++++..+++++.
T Consensus 10 ~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~i~~t~~~t~a~~~al~~~~~ 81 (379)
T TIGR03402 10 RVDPEVLEAMLPYFTEYF--GNPSSMHSFGGEVGKAVEEAREQVAKLL------GAEPDEIIFTSGGTESDNTAIKSALA 81 (379)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 456788898888775321 122111 1346667777776 3567899999999999999998874
Q ss_pred --CCCCEEEEcCCCCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHH
Q 022213 129 --RPGANVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQ 203 (301)
Q Consensus 129 --~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~ 203 (301)
.+||+|++....|+++. ..++..|.+++.++.+. ++.+|++.+++.++++++++++++++||||.+++ ++
T Consensus 82 ~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~ 156 (379)
T TIGR03402 82 AQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE--EGRLDLEELRAAITDDTALVSVMWANNETGTIFP---IE 156 (379)
T ss_pred hcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEEcccCCeeeccc---HH
Confidence 45789999998887654 33445799999988743 3458999999999888999999999999999999 67
Q ss_pred HHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 204 ~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+|.++|+++|+++++|++++. +..+..+...+-+ +++.|.+|.++.+| +|+++++.
T Consensus 157 ~I~~l~~~~g~~vivD~~~~~----g~~~~~~~~~~~D---~~~~s~~K~~gp~G--~g~l~v~~ 212 (379)
T TIGR03402 157 EIGEIAKERGALFHTDAVQAV----GKIPIDLKEMNID---MLSLSGHKLHGPKG--VGALYIRK 212 (379)
T ss_pred HHHHHHHHcCCEEEEECcccc----cccccCcccCCCC---EEEEcHHHcCCCCc--eEEEEECC
Confidence 889999999999999999975 2223333332222 77789999765556 77777654
No 192
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=99.82 E-value=1.1e-18 Score=154.55 Aligned_cols=204 Identities=18% Similarity=0.169 Sum_probs=165.1
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc----CCCCCCCC--CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS----GKFNCYAT--NSGIPPARRAIADYLSRDLPYKLSADDVYVT 113 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t 113 (301)
.+.+.+.|+.+.- -+.++.|.+++...+.. +.-..|+- ..+....|+.+|+++ +.++++|++|
T Consensus 40 ~~~~~vyld~~at-----~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklI------nAd~~dIiFt 108 (428)
T KOG1549|consen 40 HGTRPVYLDNQAT-----GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLI------NADPSDIVFT 108 (428)
T ss_pred CCCccEEEecCcC-----CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHh------CCCCCcEEEe
Confidence 3667888888863 35677888888876653 22112432 334778999999999 5688889999
Q ss_pred CCHHHHHHHHHHHhc-CCCC----EEEEcCCCCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEE
Q 022213 114 LGCKQAVEVILSVLA-RPGA----NVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMV 185 (301)
Q Consensus 114 ~g~~~al~~~~~~l~-~~gd----~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 185 (301)
+|+||+++++++.+. ..+| .|++.+-.|.... ..++..|++++++|+. +...+|.+.|++.++++++++.
T Consensus 109 s~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~~~d~~~~~~~i~~~T~lv~ 186 (428)
T KOG1549|consen 109 SGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSGLVDISKLREAIRSKTRLVS 186 (428)
T ss_pred CCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccccccHHHHHHhcCCCceEEE
Confidence 999999999999996 3566 8999888888654 3445678999999986 4456999999999999999999
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEE
Q 022213 186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265 (301)
Q Consensus 186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~ 265 (301)
+.+.+|-+|+.++ +++|+++|+++++.+++|.+++- |+-+..+..++.+ ++..|.+|.||.|| +|++.
T Consensus 187 I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQav----G~i~vDV~eln~D---~~s~s~HK~ygp~~--iGaLY 254 (428)
T KOG1549|consen 187 IMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQAV----GKIPVDVQELNAD---FLSISAHKIYGPPG--IGALY 254 (428)
T ss_pred EEecccCcccccc---HHHHHHHhCcCCcEEEeehhhhc----CCccccHHHcCch---heeeecccccCCCc--ceEEE
Confidence 9999999999999 99999999999999999999987 5556666666555 77779999999999 99998
Q ss_pred eeC
Q 022213 266 TND 268 (301)
Q Consensus 266 ~~~ 268 (301)
+..
T Consensus 255 vr~ 257 (428)
T KOG1549|consen 255 VRR 257 (428)
T ss_pred Ecc
Confidence 864
No 193
>PLN02651 cysteine desulfurase
Probab=99.82 E-value=3.1e-18 Score=155.26 Aligned_cols=190 Identities=18% Similarity=0.160 Sum_probs=139.6
Q ss_pred CChHHHHHHHHHHHhcCCCCC------CCC--CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh---
Q 022213 59 RTAVEAEDAIVDAVRSGKFNC------YAT--NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL--- 127 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~------Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l--- 127 (301)
+.|+.+.+++.+.+....... +.. ..-+.++|+.+++++ +.++++|++|+|+|++++.++.++
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~t~~~t~a~~~~l~~~~~~ 83 (364)
T PLN02651 10 PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI------GADPKEIIFTSGATESNNLAIKGVMHF 83 (364)
T ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence 456788898887765321100 000 011345667777776 356789999999999988887665
Q ss_pred -cCCCCEEEEcCCCCcchHH---HHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHH
Q 022213 128 -ARPGANVLLPRPGWPYYEG---IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQ 203 (301)
Q Consensus 128 -~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~ 203 (301)
.++||+|++....|+++.. .++..|++++.+++.. ++.+|++.+++.++++++++++++++|+||.+++ ++
T Consensus 84 ~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~---l~ 158 (364)
T PLN02651 84 YKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS--DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQP---VE 158 (364)
T ss_pred ccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEECCCCCceeccc---HH
Confidence 4689999999988876433 3345788888888743 4568999999999888999999999999999999 88
Q ss_pred HHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 204 ~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+|+++|+++|+++++|.+++... .+..+..++-+ +++.|..|. +.| ..+|++++++
T Consensus 159 ~I~~~~~~~g~~~~vD~a~~~g~----~~~~~~~~~~D---~~~~s~hK~-~gp-~G~g~l~v~~ 214 (364)
T PLN02651 159 EIGELCREKKVLFHTDAAQAVGK----IPVDVDDLGVD---LMSISGHKI-YGP-KGVGALYVRR 214 (364)
T ss_pred HHHHHHHHcCCEEEEEcchhhCC----cccCcccCCCC---EEEechhhh-CCC-CceEEEEEcC
Confidence 89999999999999999998622 22333333333 888899996 433 4588888765
No 194
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=99.82 E-value=4.7e-19 Score=154.15 Aligned_cols=205 Identities=21% Similarity=0.290 Sum_probs=131.6
Q ss_pred CCCCC-CCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH--HHHHHHhc----C--------CCCEEEEcCCC
Q 022213 76 KFNCY-ATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV--EVILSVLA----R--------PGANVLLPRPG 140 (301)
Q Consensus 76 ~~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al--~~~~~~l~----~--------~gd~Vl~~~p~ 140 (301)
+..+| +...|++++|+-.|+++ ++++++|++..+++-.+ +.+.++++ . +.-+.++|.|+
T Consensus 60 D~RNY~G~l~Gipe~r~l~a~ll------gv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPG 133 (425)
T PF12897_consen 60 DCRNYPGGLDGIPEARELFAELL------GVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPG 133 (425)
T ss_dssp BTTSS-S-SS--HHHHHHHHHHH------TS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES-
T ss_pred cccCCCCccCChHHHHHHHHHHh------CCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCC
Confidence 36789 88899999999999999 78999999988877665 23333332 1 12378999999
Q ss_pred CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEEEcCC--CCCcccCCCHHHHHHHHHH-HHhCCCe
Q 022213 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMVIINP--GNPCGNVFTYHHLQEIAEM-ARKLRVM 215 (301)
Q Consensus 141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p--~nptG~~~~~~~l~~i~~~-~~~~~~~ 215 (301)
|..+..+++..|++++.||+..+ ++|.|.+++++.+ ..|. +.|.| +||||.++|.+.+++++.+ ....++.
T Consensus 134 YDRHFai~E~~Giemi~VpM~~d---GPDmD~Ve~LV~~D~svKG-iWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFR 209 (425)
T PF12897_consen 134 YDRHFAITEHFGIEMIPVPMTED---GPDMDMVEELVAEDPSVKG-IWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFR 209 (425)
T ss_dssp -HHHHHHHHHCT-EEEEEEEETT---EE-HHHHHHHTHTSTTEEE-EEE-SSS-TTT-----HHHHHHHHHS--SSTT-E
T ss_pred chHHHHHHHhhCcEEEecCCCCC---CCCHHHHHHHHhcCCccce-EEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeE
Confidence 99999999999999999999643 4899999998843 3344 44555 9999999999999999998 4567999
Q ss_pred EEEccCCcccccCC-CC-CCCcccc------CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 216 VVADEVYGHLTFGS-IP-YTPMGLF------GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 216 ii~D~~y~~~~~~~-~~-~~~~~~~------~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
|+.|++|....+.+ .. ...+..+ +..++++.+.|+||. ..||.+|+++.++. +.++.+++..+
T Consensus 210 I~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKI-Tf~GaGva~~aaS~--------~Nl~~~~~~~~ 280 (425)
T PF12897_consen 210 IFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKI-TFPGAGVAFFAASE--------ANLAWIKKHLS 280 (425)
T ss_dssp EEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTT-S-TTSS-EEEEE-H--------HHHHHHHHHHH
T ss_pred EEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEeccccc-ccCCcceeeeecCH--------HHHHHHHHHhc
Confidence 99999999887732 22 1111111 334679999999999 89999999999865 36677766655
Q ss_pred -ccCCCccccccc
Q 022213 288 -IYSDIPTFIQVC 299 (301)
Q Consensus 288 -~~~~~~~~~q~~ 299 (301)
...++.+++|..
T Consensus 281 ~~tIgpdKvNQLR 293 (425)
T PF12897_consen 281 VQTIGPDKVNQLR 293 (425)
T ss_dssp HH-S---HHHHHH
T ss_pred CceeCccHHHHHH
Confidence 366888888853
No 195
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.81 E-value=2.3e-18 Score=156.09 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeecC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDLL 161 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~ 161 (301)
...|++.+|++. ..+++++++|+++|+..++.+++++||+|++++|.|.+.... +...|+++..++..
T Consensus 52 ~~~lE~~lA~l~--------g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~ 123 (377)
T TIGR01324 52 HFALQDAMCELE--------GGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL 123 (377)
T ss_pred HHHHHHHHHHHh--------CCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 368999999987 346899999999999999999999999999999999876543 35678887776531
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
+.+.+++.+++++++|++.+|+||+|...+ +++|+++|+++|+++|+|++|+..... .++ .++.
T Consensus 124 -------~~e~l~~~i~~~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~~----~pl-~~ga- 187 (377)
T TIGR01324 124 -------IGEDIATLIQPNTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLLF----KPL-EHGV- 187 (377)
T ss_pred -------CHHHHHHhcCCCceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCcccccc----Ccc-ccCc-
Confidence 237899989889999999999999988876 999999999999999999999864332 122 1222
Q ss_pred CCEEEEecCcccCCCC-cceeEEEEee
Q 022213 242 VPVITLGSISKRWLVP-GWRFGWLVTN 267 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~~-G~rvG~~~~~ 267 (301)
-|+++|++|.++.+ +...|+++++
T Consensus 188 --Divv~S~tK~l~G~~d~~gG~v~~~ 212 (377)
T TIGR01324 188 --DISIQAGTKYLVGHSDIMIGTVVAN 212 (377)
T ss_pred --eEEEecCceeccCCCCceEEEEEeC
Confidence 28999999998764 5778888763
No 196
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.81 E-value=1.6e-18 Score=157.85 Aligned_cols=241 Identities=14% Similarity=0.100 Sum_probs=162.0
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+++|..|.-..+-.. .++.+.+++.++++... ... ..+..+++.++++++.+..+ .+.++++++++
T Consensus 25 d~~G~~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~~--~~~-~~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~ 96 (377)
T PRK02936 25 DNNGKTYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDIW--HVS-NLFTNSLQEEVASLLAENSA----GDLVFFCNSGA 96 (377)
T ss_pred eCCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcc--ccc-cccCCHHHHHHHHHHHhcCC----CCEEEEeCCcH
Confidence 346889999988863322223 56788899999887422 122 23457899999999976322 35899999999
Q ss_pred HHHHHHHHHhc-CCC-CEEEEcCCCCcchHHH-HHhcCceEE---EeecCCCCCC--CCCHHHHHhhcccCccEEEEcCC
Q 022213 118 QAVEVILSVLA-RPG-ANVLLPRPGWPYYEGI-AQRKQVEVR---HFDLLPERNW--EVDLDAVEALADKNTAAMVIINP 189 (301)
Q Consensus 118 ~al~~~~~~l~-~~g-d~Vl~~~p~~~~~~~~-~~~~g~~~~---~~~~~~~~~~--~~~~~~l~~~~~~~~~~v~l~~p 189 (301)
+|++.+++... -+| ++|++.+++|++.... ....+.... +.++.++..+ -.|++.+++.+.++++++++..+
T Consensus 97 ~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i 176 (377)
T PRK02936 97 EANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVV 176 (377)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecc
Confidence 99999998653 244 6799999999864322 222221110 1111110000 12789999988877888888888
Q ss_pred CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 190 GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 190 ~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
++++|.. .+.+.+++|.++|++||+++|+||+|..+.+.+.. ..+..+....+++ ++||.++ +|+|+||++++.
T Consensus 177 ~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~-~~~~~~~~~~di~---t~sK~l~-~G~~ig~v~~~~ 251 (377)
T PRK02936 177 QGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTL-FAYEQFGLDPDIV---TVAKGLG-NGIPVGAMIGKK 251 (377)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh-hHHHhhCCCCcEE---EEccccc-CCCccEEEEEcH
Confidence 8988876 57899999999999999999999999887665532 2222232223333 7999988 899999999743
Q ss_pred CCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 269 PNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
++++.+..... ...+.++++|.+
T Consensus 252 --------~~~~~~~~~~~~~t~~~~~~~~aa 275 (377)
T PRK02936 252 --------ELGTAFGPGSHGSTFGGNPLAMAA 275 (377)
T ss_pred --------HHHhhccCCCCCCCCCCCHHHHHH
Confidence 36666654322 233567777765
No 197
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.81 E-value=2.8e-18 Score=157.77 Aligned_cols=214 Identities=19% Similarity=0.129 Sum_probs=147.3
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC------CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN------CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
++++++|+..+. -.+...+.+.+++.++++..... .++...-..+|++.+++++ + .+..++++
T Consensus 44 ~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g----~~~~~~~~ 112 (406)
T PRK13393 44 PREVTVWCSNDY---LGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLH----G----KEAALLFT 112 (406)
T ss_pred CccEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHh----C----CCcEEEeC
Confidence 467899988874 34666788999999998742210 0111112356777777776 2 35666666
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcC
Q 022213 115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIIN 188 (301)
Q Consensus 115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~ 188 (301)
+++++...++..+.. +||.|+.....|......+...|.++..++. .|++.+++.++ ++++++++++
T Consensus 113 SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~~~ 185 (406)
T PRK13393 113 SGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAFES 185 (406)
T ss_pred CcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEEcC
Confidence 667899999988765 7888877777887776677777777766653 36666766553 2467788999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC-CEEEEecCcccCCCCcceeEEEEee
Q 022213 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV-PVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~-~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
++|++|.+.+ +++|.++|+++++++|+||+|....++..........+... ..|+++||||.|+++| ||++++
T Consensus 186 v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~~~ 259 (406)
T PRK13393 186 VYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG---GYITGS 259 (406)
T ss_pred CCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC---ceeeCC
Confidence 9999999999 88888889999999999999985444321111111111112 3588899999999988 998763
Q ss_pred CCCCcccchhHHHHHHhhh
Q 022213 268 DPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (301)
. ++++.++...
T Consensus 260 ~--------~~~~~l~~~~ 270 (406)
T PRK13393 260 A--------ALCDFIRSFA 270 (406)
T ss_pred H--------HHHHHHHHhC
Confidence 2 4677776653
No 198
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.81 E-value=1.4e-18 Score=159.02 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~ 160 (301)
....|++.++++. ..+..+++++++.|+.+++.+++++||+|+++.+.|.+.... +...|+++.+++.
T Consensus 62 tv~~lE~~la~le--------g~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 62 TLAAFEQKLAELE--------GGVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred HHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 4678899999987 335689999999999999999999999999999999866555 6778999998864
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
..|++.+++++++++++|++.+|+||++.+.+ +++|+++|+++|+++|+|++|..-.. ..++ .++-
T Consensus 134 ------~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~----~~pl-~~GA 199 (432)
T PRK06702 134 ------NLTADEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL----CQAF-EHGA 199 (432)
T ss_pred ------CCCHHHHHHhCCcCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh----CChh-hcCC
Confidence 26889999999999999999999999999999 99999999999999999999863211 1111 1222
Q ss_pred CCCEEEEecCcc-----cCCCCccee-----EEEEe
Q 022213 241 IVPVITLGSISK-----RWLVPGWRF-----GWLVT 266 (301)
Q Consensus 241 ~~~vi~~~s~SK-----~~~~~G~rv-----G~~~~ 266 (301)
+ |++.|+|| +..++|.++ +|...
T Consensus 200 D---Ivv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~ 232 (432)
T PRK06702 200 N---IIVHSTTKYIDGHASSLGGIVIDGGNFDWTNG 232 (432)
T ss_pred C---EEEEccccccCCCcceeceEEEeCCCcccccc
Confidence 2 99999999 666677776 56554
No 199
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.80 E-value=1e-18 Score=161.47 Aligned_cols=239 Identities=12% Similarity=0.077 Sum_probs=158.9
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA-TNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
+...+++.++|+..|..... .-..++.+.+++.+++.... .|. +..+..+|+++|++++.. .++|++++
T Consensus 42 l~d~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~--~~~~~~~~~~~lae~l~~~~~~-------~~~v~~~~ 111 (423)
T TIGR00713 42 LYDVDGNEYIDYVLSWGPLI-LGHAHPRVVEAVKEALERGT--SYGAPTEAEILLAKEIISRVPS-------VEMVRFVN 111 (423)
T ss_pred EEeCCCCEEEEccccccccc-cCCCCHHHHHHHHHHHHhCC--cCCCCCHHHHHHHHHHHHhCCc-------ccEEEEeC
Confidence 44456899999998865421 12456889999999987543 343 344678899999988722 36899999
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc---CceEEEeecCCC-------CCC---CCCHHHHHhhcc-
Q 022213 115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK---QVEVRHFDLLPE-------RNW---EVDLDAVEALAD- 178 (301)
Q Consensus 115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~-------~~~---~~~~~~l~~~~~- 178 (301)
|+++|++.+++.... ..++|+...++|+++...+... +......+..+. ... ..|++.+++.++
T Consensus 112 sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~ 191 (423)
T TIGR00713 112 SGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEE 191 (423)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHH
Confidence 999999999986542 4589999999999875433321 111100010000 000 027889988876
Q ss_pred --cCccEEEE-cCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC
Q 022213 179 --KNTAAMVI-INPGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW 254 (301)
Q Consensus 179 --~~~~~v~l-~~p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~ 254 (301)
.+++++++ +.++| +|.+.+ .+.+++|.++|++||+++|+||+|..+.++. .+ ....++...+++ +|||.+
T Consensus 192 ~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~-~~-~~~~~~~~pDi~---t~sK~l 265 (423)
T TIGR00713 192 YGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVAL-GG-AQEYFGVEPDLT---TLGKII 265 (423)
T ss_pred cCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCc-ch-hHHHhCCCcchh---hhhhhh
Confidence 35566666 47788 788887 6899999999999999999999999885432 11 111122222333 799998
Q ss_pred CCCcceeEEEEeeCCCCcccchhHHHHHHhh---hc-ccCCCccccccc
Q 022213 255 LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC---LS-IYSDIPTFIQVC 299 (301)
Q Consensus 255 ~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~q~~ 299 (301)
+ +|+|+||++++. ++++.++.. .. ...+.++++|.+
T Consensus 266 ~-~G~pig~v~~~~--------~i~~~~~~~~~~~~~~T~~~~~~~~aa 305 (423)
T TIGR00713 266 G-GGLPVGAFGGRR--------EIMERLAPEGPVYQAGTLSGNPLAMAA 305 (423)
T ss_pred c-CCCceeeeeEHH--------HHHHhhCcCCCeeeccCCCCCHHHHHH
Confidence 7 899999999853 477777532 11 222456666554
No 200
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.80 E-value=3.1e-18 Score=159.47 Aligned_cols=201 Identities=23% Similarity=0.284 Sum_probs=142.4
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC--CCCHHHHHHHHHHH---hhhCCCCCCCCCEEEcCCHH
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN--SGIPPARRAIADYL---SRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l---~~~~~~~~~~~~i~~t~g~~ 117 (301)
..++|+.|.|+ +..|..+.++.... . ....|.+. .-...++++++++. .+.+| ++.+++++|+|++
T Consensus 69 ~~~~lg~g~~~----~~~p~~~~~~~~~~-~--~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g--~~~~~v~~~~g~t 139 (447)
T PRK00451 69 YPSFLGAGAYD----HYIPAVVDHIISRS-E--FYTAYTPYQPEISQGTLQAIFEYQTMICELTG--MDVANASMYDGAT 139 (447)
T ss_pred CcccCcccccC----CcCcHHHHHHHhch-h--HHHhcCCCCCccchHHHHHHHHHHHHHHHHhC--CCcceEEecCcHH
Confidence 67889988864 45565655544322 1 12235441 11234565555433 44444 4566899999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCCcchHHHHHh----cCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCC
Q 022213 118 QAVEVILSVLA-RPGANVLLPRPGWPYYEGIAQR----KQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNP 192 (301)
Q Consensus 118 ~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np 192 (301)
++++.++.++. .+||+|+++.+.|+.+...++. .|.+++.+++++ + .+|++++++.++++++++++++| ||
T Consensus 140 ~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~--~-~~d~~~l~~~i~~~t~~v~l~~p-n~ 215 (447)
T PRK00451 140 ALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYED--G-VTDLEALEAAVDDDTAAVVVQYP-NF 215 (447)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCC--C-CCCHHHHHHhcCCCeEEEEEECC-CC
Confidence 99999998885 7899999999999988766543 689999998754 3 68999999999888999999999 89
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEE--ccCCcccccCCCCCCCccccCCCCCEEEEe---cCcccCCCCcceeEEEEee
Q 022213 193 CGNVFTYHHLQEIAEMARKLRVMVVA--DEVYGHLTFGSIPYTPMGLFGSIVPVITLG---SISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 193 tG~~~~~~~l~~i~~~~~~~~~~ii~--D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~---s~SK~~~~~G~rvG~~~~~ 267 (301)
||.+.+ +++|+++|+++|+++++ |.+..... .....++. .++++ +|||.+.+.|.|+||++++
T Consensus 216 tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~------~~~~~~~~---D~~~~s~~k~~~~~~~~Gpg~G~l~~~ 283 (447)
T PRK00451 216 FGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLL------KPPGEYGA---DIVVGEGQPLGIPLSFGGPYLGFFATR 283 (447)
T ss_pred CCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccC------CCcccCCC---CEEEECCCcCCCCCCCCCCCchHHHhh
Confidence 999988 88999999999999988 54322111 11112222 24444 7888888889999999874
Q ss_pred C
Q 022213 268 D 268 (301)
Q Consensus 268 ~ 268 (301)
.
T Consensus 284 ~ 284 (447)
T PRK00451 284 K 284 (447)
T ss_pred H
Confidence 3
No 201
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.80 E-value=3.2e-18 Score=155.36 Aligned_cols=169 Identities=19% Similarity=0.247 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~ 160 (301)
....|++.++++.. .+..+++++++.++..++ .++++||+|+++.|.|.+... .+...|+++++++.
T Consensus 51 ~~~~Le~~lA~l~g--------~~~~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 121 (377)
T PRK07671 51 TRAALEELIAVLEG--------GHAGFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT 121 (377)
T ss_pred HHHHHHHHHHHHhC--------CCceEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC
Confidence 35788899998872 233455555677887665 577899999999999984432 34457888888864
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
.|++.+++++++++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....+. . ++. +.
T Consensus 122 -------~d~~~l~~ai~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~--~--p~~-~g- 185 (377)
T PRK07671 122 -------SNLEEVEEAIRPNTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQ--S--PIS-LG- 185 (377)
T ss_pred -------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccC--C--hhh-hC-
Confidence 4889999999889999999999999999988 888888899999999999999764332 1 121 22
Q ss_pred CCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 241 IVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
..|++.|+||.++.++ .-.|++++.++ +++++++....
T Consensus 186 --~Divv~S~sK~l~G~~~~~~G~~v~~~~-------~l~~~~~~~~~ 224 (377)
T PRK07671 186 --ADIVLHSATKYLGGHSDVVAGLVVVNSP-------ELAEDLHFVQN 224 (377)
T ss_pred --CeEEEecCcccccCCccceeEEEEeCcH-------HHHHHHHHHHH
Confidence 2399999999988664 34566665442 46666665543
No 202
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.80 E-value=2.7e-18 Score=154.93 Aligned_cols=188 Identities=15% Similarity=0.144 Sum_probs=133.9
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC--CEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213 58 FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD--DVYVTLGCKQAVEVILSVLARPGANVL 135 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~--~i~~t~g~~~al~~~~~~l~~~gd~Vl 135 (301)
..+++.+.+++....... ...|. .-...+|+.+++++ +++++ .|++++|+++++..++.+++.+||+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~la~~~------~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi 78 (355)
T TIGR03301 8 LSTSATVRDAMLVDWCHW-DSEFN--DVTDQVRDRLLALA------GGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLL 78 (355)
T ss_pred CCCCHHHHHHhhhhccCC-CHHHH--HHHHHHHHHHHHHh------cCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEE
Confidence 345667777776532211 11232 22456777777777 23333 688899999999999999998888877
Q ss_pred EcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC--ccEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 022213 136 LPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN--TAAMVIINPGNPCGNVFTYHHLQEIAEMARK 211 (301)
Q Consensus 136 ~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~ 211 (301)
+..+.+.+ +...++..|.+++.++.+. ++.+|++.+++.++++ .+.+++++++||||...+ +++|+++|++
T Consensus 79 ~~~~~~~~~~~~~~a~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~ 153 (355)
T TIGR03301 79 VLINGAYGERLAKICEYLGIPHTDLNFSE--YEPPDLNRIEEALAADPDITHVATVHHETTTGILNP---LEAIAKVARS 153 (355)
T ss_pred EECCCchhhHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhH---HHHHHHHHHH
Confidence 66655543 4566778899999888743 4568999999988653 456778899999999998 8899999999
Q ss_pred CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC-CCCcceeEEEEeeC
Q 022213 212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW-LVPGWRFGWLVTND 268 (301)
Q Consensus 212 ~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~ 268 (301)
|++++|+|++++... .+..+..++ ..++++|++|++ +.+| +||+++++
T Consensus 154 ~~~~livD~~~s~g~----~~~~~~~~~---~d~~~~s~~K~l~~~~G--~g~~~~~~ 202 (355)
T TIGR03301 154 HGAVLIVDAMSSFGA----IPIDIEELD---VDALIASANKCLEGVPG--FGFVIARR 202 (355)
T ss_pred cCCEEEEEeccccCC----cccchhhcC---ccEEEecCCcccccCCc--eeEEEECH
Confidence 999999998776421 222333332 238899999985 4456 79999854
No 203
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.80 E-value=2.5e-18 Score=157.90 Aligned_cols=233 Identities=15% Similarity=0.099 Sum_probs=150.2
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..++..+|||..|.-..+-.. .++.+.+++.++++... .+... ...+...++++.+.+.. ..+.++++++++
T Consensus 36 d~dG~~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~--~~~~~-~~~~~~~~l~~~l~~~~----~~~~~~~~~sGs 107 (403)
T PRK05093 36 DQQGKEYIDFAGGIAVTALGH-CHPALVKALKEQGEKLW--HISNV-FTNEPALRLAKKLIDAT----FAERVFFANSGA 107 (403)
T ss_pred eCCCCEEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcC--cccCc-cCCHHHHHHHHHHHhhC----CCCEEEEeCchH
Confidence 345788999977621111123 56788899988886421 11111 11223345555554422 236999999999
Q ss_pred HHHHHHHHHhcC--------CCCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCCCCCCHHHHHhh
Q 022213 118 QAVEVILSVLAR--------PGANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERNWEVDLDAVEAL 176 (301)
Q Consensus 118 ~al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~~~~~~~~l~~~ 176 (301)
+|.+.+++.... ..++|+..+-+|++........ +. ++..++. .|++.+++.
T Consensus 108 eA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~ 180 (403)
T PRK05093 108 EANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAAVKAV 180 (403)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHHHH
Confidence 999999986521 2357888888887753322111 11 1111111 378999988
Q ss_pred cccCccEEEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC
Q 022213 177 ADKNTAAMVIINPGNPCGNVF--TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW 254 (301)
Q Consensus 177 ~~~~~~~v~l~~p~nptG~~~--~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~ 254 (301)
+.++++++++. |.||+|.++ +.+.+++|.++|++||+++|+||+|..+.+.+.. .+...++...+ +.||||++
T Consensus 181 l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~-~~~~~~~~~pd---i~s~sK~l 255 (403)
T PRK05093 181 IDDHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDL-FAYMHYGVTPD---ILTSAKAL 255 (403)
T ss_pred hcCCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc-hhhhhcCCCCC---EEEecccc
Confidence 87666666655 888887765 8899999999999999999999999988776642 22222222222 45899998
Q ss_pred CCCcceeEEEEeeCCCCcccchhHHHHHHhh-hcccCCCccccccc
Q 022213 255 LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC-LSIYSDIPTFIQVC 299 (301)
Q Consensus 255 ~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~ 299 (301)
+ +|+|+||+++++ ++++.++.. .....+.+++.|.+
T Consensus 256 ~-~G~rig~vv~~~--------~i~~~l~~~~~~~t~~~~~~~~~a 292 (403)
T PRK05093 256 G-GGFPIGAMLTTA--------EIASHFKVGTHGSTYGGNPLACAV 292 (403)
T ss_pred c-CCcceEEEEEcH--------HHHhhcCCCCCCCCCCCCHHHHHH
Confidence 7 899999999854 466776653 22233567777754
No 204
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=99.80 E-value=8.9e-19 Score=147.43 Aligned_cols=246 Identities=18% Similarity=0.170 Sum_probs=174.8
Q ss_pred hcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCC-hHHHHHHHHHHHhcC-CCCCCCCCCCCHHHHHHHHH
Q 022213 18 KAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT-AVEAEDAIVDAVRSG-KFNCYATNSGIPPARRAIAD 95 (301)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~-~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~ 95 (301)
..++++.++.+.+...++ ..+..+||++|.....-.-|. .+.+.++-.+...+. -.++|-|-.|++.++++.++
T Consensus 10 ~~a~p~~vf~~~~~y~~d----~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~e 85 (410)
T KOG1412|consen 10 PVAPPIEVFKLNASYGED----LDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATE 85 (410)
T ss_pred ccCChHHHHhhHHHhccc----CCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHH
Confidence 356777777776654433 367789999995543211111 133433333332222 25689999999999999999
Q ss_pred HHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcC-ceEEEeecCCCCCCCCCH
Q 022213 96 YLSRDLPYKLSADDV--YVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQ-VEVRHFDLLPERNWEVDL 170 (301)
Q Consensus 96 ~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 170 (301)
++-......+..+++ +=+-++|.|+..+...+.. +...|.+..|+|.++..+++.+| ..+..++....+.-.+|+
T Consensus 86 l~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~ 165 (410)
T KOG1412|consen 86 LLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDL 165 (410)
T ss_pred HhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecH
Confidence 986544444556665 3356667788777766632 45679999999999999999999 556666665555667999
Q ss_pred HHHHhhcccCc-cE-EEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC--CCccccCCC-CCE
Q 022213 171 DAVEALADKNT-AA-MVIINP-GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY--TPMGLFGSI-VPV 244 (301)
Q Consensus 171 ~~l~~~~~~~~-~~-v~l~~p-~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~-~~v 244 (301)
+.+...++..+ .. +++..+ +||||+..+.++|.+|+++.++.+++.+.|-+|..+.-++... +.+..+..+ ..+
T Consensus 166 e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~ 245 (410)
T KOG1412|consen 166 EGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFEL 245 (410)
T ss_pred HHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeE
Confidence 99988886533 33 344444 9999999999999999999999999999999999988764322 222222222 358
Q ss_pred EEEecCcccCCCCcceeEEEEee
Q 022213 245 ITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 245 i~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+++.||+|.||+.+-|+|.+.+-
T Consensus 246 fv~QSFaKNfGlYneRvGnltvv 268 (410)
T KOG1412|consen 246 FVCQSFAKNFGLYNERVGNLTVV 268 (410)
T ss_pred EEEhhhhhhcccccccccceEEE
Confidence 99999999999999999996443
No 205
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.80 E-value=3.8e-18 Score=154.91 Aligned_cols=190 Identities=18% Similarity=0.172 Sum_probs=136.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEc
Q 022213 58 FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP 137 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~ 137 (301)
.++++.+.+++.+..... ...|. .-..++|+.+++++. ..-+.+.|++++++++++..++.++..+||.|+++
T Consensus 14 ~~~~~~~~~a~~~~~~~~-~~~~~--~~~~~~~~~l~~l~~----~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~ 86 (368)
T PRK13479 14 LTTSRTVREAMLRDWGSW-DDDFN--ALTASVRAKLVAIAT----GEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVP 86 (368)
T ss_pred CCCCHHHHHHhCCCCCCC-ChHHH--HHHHHHHHHHHHHhC----CCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEE
Confidence 345566666655433111 11122 134677777777772 11123568899999999999999999999999999
Q ss_pred CCCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 022213 138 RPGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR 213 (301)
Q Consensus 138 ~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~ 213 (301)
.++|.+. ...++..|++++.++... ++.+|++.+++.+++ +++.+++++|+||||...+ +++|+++|++++
T Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~ 161 (368)
T PRK13479 87 DNGAYGARIAQIAEYLGIAHVVLDTGE--DEPPDAAEVEAALAADPRITHVALVHCETTTGILNP---LDEIAAVAKRHG 161 (368)
T ss_pred eCCchHHHHHHHHHHcCCcEEEEECCC--CCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC---HHHHHHHHHHcC
Confidence 8888765 367788999999998753 345899999998864 3567889999999999999 788889999999
Q ss_pred CeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC-CCCcceeEEEEeeC
Q 022213 214 VMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW-LVPGWRFGWLVTND 268 (301)
Q Consensus 214 ~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~ 268 (301)
+++|+|+++.. +. .+..+..++.+ +++.|++|++ +.+| +||++++.
T Consensus 162 ~~livDa~~~~---g~-~~~~~~~~~~d---~~v~s~~K~l~g~~G--~G~l~~~~ 208 (368)
T PRK13479 162 KRLIVDAMSSF---GA-IPIDIAELGID---ALISSANKCIEGVPG--FGFVIARR 208 (368)
T ss_pred CEEEEEccccc---CC-ccccccccCce---EEEecCccccccCCC--ceEEEECH
Confidence 99999966533 22 22333333222 7778999975 5577 69999854
No 206
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.80 E-value=4.8e-18 Score=155.00 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLL 161 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~ 161 (301)
..+|++.+|++.. .+ +.+ ++++++.++..++. ++++||+|+++.|.|.+.. ..++..|+++.+++.
T Consensus 56 ~~~le~~lA~l~g------~~-~~v-~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~- 125 (390)
T PRK08064 56 REALEDIIAELEG------GT-KGF-AFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM- 125 (390)
T ss_pred HHHHHHHHHHHhC------CC-CeE-EECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC-
Confidence 5688999999872 23 344 45555788988886 6789999999999998432 445668999998875
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
.|++.+++.+++++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|...... .++ .++
T Consensus 126 ------~d~~~l~~~l~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~----~~~-~~g-- 189 (390)
T PRK08064 126 ------TNLEEVAQNIKPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ----KPL-DLG-- 189 (390)
T ss_pred ------CCHHHHHHhcCCCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc----Cch-hhC--
Confidence 3688999999889999999999999999998 788888899999999999999864321 112 122
Q ss_pred CCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 242 VPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
..+++.|+||.++. +|...|++++.+ ++++++++....
T Consensus 190 -~Divv~S~tK~~~G~~~~laG~~v~~~-------~~~~~~l~~~~~ 228 (390)
T PRK08064 190 -ADVVLHSATKFLAGHSDVLAGLAVVKD-------EELAQKLYFLQN 228 (390)
T ss_pred -CcEEEeecceeccCCccceeEEEEeCC-------HHHHHHHHHHHH
Confidence 23889999999765 456678877643 247777766654
No 207
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.80 E-value=4.6e-18 Score=155.28 Aligned_cols=211 Identities=14% Similarity=0.143 Sum_probs=143.3
Q ss_pred eeccCCCCCCCCCCCChHHHHHHHHHHHhc-------CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 45 VPLGYGDPTAFPCFRTAVEAEDAIVDAVRS-------GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 45 i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~-------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
++|+..+. -.+...+++++++.+++++ ... .|+...++.+|++.+|+++.. .+.+++++|.+
T Consensus 1 ~~f~s~dy---Lgl~~~~~~~~~~~~a~~~~g~~~~~sr~-~yg~~~~~~~LE~~lA~~~g~-------e~al~~~sG~~ 69 (392)
T PLN03227 1 LNFATHDF---LSTSSSPTLRQTALESLSHYGCGSCGPRG-FYGTIDAHLELEQCMAEFLGT-------ESAILYSDGAS 69 (392)
T ss_pred CCCcCcCc---cCCCCCHHHHHHHHHHHHHhCCCCccccc-ccCChHHHHHHHHHHHHHhCC-------CcEEEecCcHH
Confidence 35666653 3466778899998888875 233 377766788999999999832 24566666655
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-----------cCccEEEE
Q 022213 118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-----------KNTAAMVI 186 (301)
Q Consensus 118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~v~l 186 (301)
... .++.+++++||.|+++++.|.++...+...+.++..++.... .+++.+.+.+. .+++.|++
T Consensus 70 a~~-~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~----~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~ 144 (392)
T PLN03227 70 TTS-STVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDM----KDLRRVLEQVRAQDVALKRKPTDQRRFLVV 144 (392)
T ss_pred HHH-HHHHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCH----HHHHHHHHHhhhhccccccccCCCcEEEEE
Confidence 555 788889999999999999999987777777777776654211 13333333332 24677888
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC--C-CCCEEEEecCcccCCCCcceeEE
Q 022213 187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG--S-IVPVITLGSISKRWLVPGWRFGW 263 (301)
Q Consensus 187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~--~-~~~vi~~~s~SK~~~~~G~rvG~ 263 (301)
..+.||+|.+.+ +++|.++|++||+++|+||+|..-.++.........++ + .+..|++.|+||.++ .+.|+
T Consensus 145 E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g---~~gg~ 218 (392)
T PLN03227 145 EGLYKNTGTLAP---LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG---SVGGM 218 (392)
T ss_pred cCCcCCCCcccC---HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh---ccCcE
Confidence 889999999999 78889999999999999999983222211011111111 1 122488889999865 44488
Q ss_pred EEeeCCCCcccchhHHHHHHhh
Q 022213 264 LVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
++++. ++++.++..
T Consensus 219 v~~~~--------~~~~~~~~~ 232 (392)
T PLN03227 219 TVGSE--------EVVDHQRLS 232 (392)
T ss_pred EecCH--------HHHHHHHHh
Confidence 87632 466666543
No 208
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.80 E-value=3.8e-18 Score=154.01 Aligned_cols=177 Identities=20% Similarity=0.207 Sum_probs=129.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEE
Q 022213 77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVR 156 (301)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~ 156 (301)
+.+|+. ....+|++++|++. ..+++++++|+++|+.+++. ++++||+|+++.+.|.+...++.......
T Consensus 48 Y~R~~~-p~~~~le~~lA~le--------g~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~- 116 (364)
T PRK07269 48 YTRTKN-PTRAKLEETLAAIE--------SADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEG- 116 (364)
T ss_pred eeCCCC-ccHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcC-
Confidence 344555 35789999999998 46799999999999999984 66899999999999986554433221100
Q ss_pred EeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc
Q 022213 157 HFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG 236 (301)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~ 236 (301)
.+.. .+..|++++++++++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+. .++.
T Consensus 117 ~~~~----~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~----~pl~ 185 (364)
T PRK07269 117 RFHF----TYANTEEELIAAIEEDTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQ----RPIE 185 (364)
T ss_pred cEEE----EecCCHHHHHHhcCcCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC----Cchh
Confidence 0110 1236889999999889999999999999999997 889999999999999999998653321 2222
Q ss_pred ccCCCCCEEEEecCcccCCCCcc-eeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 237 LFGSIVPVITLGSISKRWLVPGW-RFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 237 ~~~~~~~vi~~~s~SK~~~~~G~-rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
. ..+ |+++|++|.++.+|- =.|++++.+. ++.++++...
T Consensus 186 ~-gaD---ivv~S~tK~l~g~~d~~gG~v~~~~~-------~l~~~~~~~~ 225 (364)
T PRK07269 186 L-GAD---IVLHSATKYLSGHNDVLAGVVVTNDL-------ELYEKLFYNL 225 (364)
T ss_pred h-CCc---EEEecCceeccCCCcccceEEEeCcH-------HHHHHHHHHH
Confidence 1 222 899999999876543 3577776443 4666665443
No 209
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.79 E-value=5.9e-18 Score=153.75 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLL 161 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~ 161 (301)
...|++.++++. ..+..+++++++.|+.+++ .++++||+|++++|.|.+.. ..+...|+++.+++.
T Consensus 52 ~~~Le~~la~l~--------g~~~al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~- 121 (380)
T PRK06176 52 RFALEELIADLE--------GGVKGFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT- 121 (380)
T ss_pred HHHHHHHHHHHh--------CCCCEEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC-
Confidence 678888888887 2334566666678998766 56799999999999997543 345667888887764
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
.|++.+++++++++++|++.+|+||||.+.+ +++|+++|+++|+++|+|++|+...+.. ++ .+..+
T Consensus 122 ------~d~e~l~~ai~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~----p~-~~gaD 187 (380)
T PRK06176 122 ------SDLSQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQN----PL-LLGAD 187 (380)
T ss_pred ------CCHHHHHHhcCcCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccCC----cc-ccCCC
Confidence 4789999999888999999999999999998 8888899999999999999998654321 22 12222
Q ss_pred CCEEEEecCcccCCCCcc-eeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 242 VPVITLGSISKRWLVPGW-RFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~~G~-rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
+++.|++|.++.+|- -.|+++..+ +++.++++...
T Consensus 188 ---ivv~S~tK~l~g~~d~~gG~vv~~~-------~~~~~~~~~~~ 223 (380)
T PRK06176 188 ---IVVHSGTKYLGGHSDVVAGLVTTNN-------EALAQEIAFFQ 223 (380)
T ss_pred ---EEEecCceeccCCccceeeEEEecH-------HHHHHHHHHHH
Confidence 899999999887764 455565433 23555555443
No 210
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.79 E-value=3.8e-18 Score=157.43 Aligned_cols=218 Identities=15% Similarity=0.085 Sum_probs=140.4
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCCCC-CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----FNCYA-TNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
.+..|+|..++. ++++.+.+++...+...- ...|. .......+.+...+.+.+.+| .+..+|++++
T Consensus 24 ~~~~~~l~~~~n------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~i~~~s 95 (416)
T PRK00011 24 QEEHIELIASEN------FVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--AEYANVQPHS 95 (416)
T ss_pred HhcCeeeecccC------cCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhC--CCceeeecCC
Confidence 467899988862 256788888766542110 00111 111122232312223333333 3445566655
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH-----HHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcC
Q 022213 115 GCKQAVEVILSVLARPGANVLLPRPGWPYYEG-----IAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIIN 188 (301)
Q Consensus 115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~ 188 (301)
+++++..++.+++++||+|+++.|+|.++.. .....|.+++.+++++ .++.+|++++++.+++ +++++++++
T Consensus 96 -gt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~k~v~~~~ 173 (416)
T PRK00011 96 -GSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE-ETGLIDYDEVEKLALEHKPKLIIAGA 173 (416)
T ss_pred -chHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCc-ccCCcCHHHHHHHHHhcCCCEEEECC
Confidence 5789999999999999999999999975421 1223456777777643 2467999999998865 788888876
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
++++ ...+ +++|+++|+++|+++|+|++|.. +.+.+..+..+. . -.++++|+||++ +|.|.||++++
T Consensus 174 ~~~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~---~di~~~S~~K~l--~g~~gg~i~~~ 241 (416)
T PRK00011 174 SAYS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--H---ADVVTTTTHKTL--RGPRGGLILTN 241 (416)
T ss_pred CcCC--CccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--C---CcEEEecCCcCC--CCCCceEEEeC
Confidence 6554 4555 88999999999999999999853 222222222222 1 127799999974 78999999985
Q ss_pred CCCCcccchhHHHHHHhhhc
Q 022213 268 DPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~ 287 (301)
++ +++++++....
T Consensus 242 ~~-------~~~~~l~~~~~ 254 (416)
T PRK00011 242 DE-------ELAKKINSAVF 254 (416)
T ss_pred CH-------HHHHHHHHHhC
Confidence 43 47777766543
No 211
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.79 E-value=8.9e-18 Score=154.60 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=129.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~ 160 (301)
...+|++.+|++.. .+..++|+++++|+.+++.+++++||+|+++...|.+....+ ...|+++++++.
T Consensus 65 ~~~~le~~lA~l~g--------~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~ 136 (433)
T PRK08134 65 TVAVLEERVAALEG--------GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP 136 (433)
T ss_pred HHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence 36788999998872 345799999999999999999999999999999998654433 558999999875
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
. |++.+++++++++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|.++..-.. ..++ .++-
T Consensus 137 ~-------d~~~l~~~i~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~----~~pl-~~Ga 201 (433)
T PRK08134 137 G-------DIDGWRAAIRPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL----LRPF-EHGA 201 (433)
T ss_pred C-------CHHHHHHhcCCCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc----CCch-hcCC
Confidence 2 789999999999999999999999999999 89999999999999999999875332 2222 2222
Q ss_pred CCCEEEEecCcccCCCCcceeEEEEee
Q 022213 241 IVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+ +++.|.+|.++.+|-.+|.+++.
T Consensus 202 D---~vv~S~tK~l~g~g~~~gG~v~~ 225 (433)
T PRK08134 202 D---LVYHSATKFLGGHGTAIGGVLVD 225 (433)
T ss_pred C---EEEeccccccCCCCCceEEEEEe
Confidence 2 88999999998899888887763
No 212
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.79 E-value=4.4e-18 Score=154.21 Aligned_cols=162 Identities=16% Similarity=0.164 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCC--CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch--HHHHHhcCceEEEeecCC
Q 022213 87 PPARRAIADYLSRDLPYKLSA--DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY--EGIAQRKQVEVRHFDLLP 162 (301)
Q Consensus 87 ~~lr~~ia~~l~~~~~~~~~~--~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~ 162 (301)
.++|+.+++++ +.++ +.|++|+|+|++++.++.++..+||.+++..+++++. ...++..|.+++.++.+.
T Consensus 38 ~~~r~~la~l~------~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~ 111 (363)
T TIGR02326 38 EQIRQQLLALA------TAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGE 111 (363)
T ss_pred HHHHHHHHHHh------CCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC
Confidence 45567777766 3443 4799999999999999999998998888776666544 456788899999998753
Q ss_pred CCCCCCCHHHHHhhccc--CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 163 ERNWEVDLDAVEALADK--NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 163 ~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
+..+|++.+++.+++ +++.+++++++||||..++ +++|+++|+++|+++|+|++++. + ..+.++..++.
T Consensus 112 --~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~~---g-~~~~~~~~~~~ 182 (363)
T TIGR02326 112 --VEPPDVVEVEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSSF---G-GIPIDIAELHI 182 (363)
T ss_pred --CCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEccccc---c-CcccchhhcCc
Confidence 445899999998875 3466888999999999999 88999999999999999988764 2 23334444433
Q ss_pred CCCEEEEecCcccCC-CCcceeEEEEeeC
Q 022213 241 IVPVITLGSISKRWL-VPGWRFGWLVTND 268 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~-~~G~rvG~~~~~~ 268 (301)
+ +++.|++|+++ .+| +||++++.
T Consensus 183 D---~~~~s~~K~l~~p~G--~G~l~~~~ 206 (363)
T TIGR02326 183 D---YLISSANKCIQGVPG--FGFVIARQ 206 (363)
T ss_pred c---EEEecCccccccCCc--ceEEEECH
Confidence 3 88899999863 356 79999854
No 213
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.79 E-value=5e-18 Score=155.58 Aligned_cols=235 Identities=13% Similarity=0.056 Sum_probs=151.5
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.++++..|--.. .--...+.+.+++.++++.... +.. ....+....+++.+.... ..+.++++++++
T Consensus 36 d~~G~~~lD~~~g~~~~-~lGh~~p~v~~ai~~~~~~~~~--~~~-~~~~~~~~~l~~~l~~~~----~~~~~~~~~SGs 107 (396)
T PRK04073 36 DPEGNRYMDMLSAYSAV-NQGHRHPKIIQALKDQADKVTL--TSR-AFHSDQLGPWYEKVAKLT----GKDMVLPMNTGA 107 (396)
T ss_pred ECCCCEEEEcCCCHHhc-cCCCCCHHHHHHHHHHHhhccc--ccc-ccCCHHHHHHHHHHHhcC----CCCeEEEcCChH
Confidence 44688899997773211 1112457888999988874321 111 112233344445444321 246899999999
Q ss_pred HHHHHHHHHhcC---------CC-CEEEEcCCCCcchHHHH-HhcCce------------EEEeecCCCCCCCCCHHHHH
Q 022213 118 QAVEVILSVLAR---------PG-ANVLLPRPGWPYYEGIA-QRKQVE------------VRHFDLLPERNWEVDLDAVE 174 (301)
Q Consensus 118 ~al~~~~~~l~~---------~g-d~Vl~~~p~~~~~~~~~-~~~g~~------------~~~~~~~~~~~~~~~~~~l~ 174 (301)
+|++.+++.... +| ++|+...-+|++..... ...+.. +..++. .|++.++
T Consensus 108 eA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~ 180 (396)
T PRK04073 108 EAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-------GDLEALK 180 (396)
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-------CCHHHHH
Confidence 999999997742 34 67888877787653222 222211 111111 2788999
Q ss_pred hhcccCccEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213 175 ALADKNTAAMVIINPGNPCGNVFTYH-HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR 253 (301)
Q Consensus 175 ~~~~~~~~~v~l~~p~nptG~~~~~~-~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~ 253 (301)
+.++++++++++..++||+|.+++.+ .+++|.++|++||+++|+||+|..+.+.+..+ .....+...+++ ++||.
T Consensus 181 ~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~-~~~~~~~~pdi~---~~sK~ 256 (396)
T PRK04073 181 AAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLF-ACDWDNVTPDMY---ILGKA 256 (396)
T ss_pred HhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHH-HhhhcCCCCCEE---Eeccc
Confidence 98877788888888899999998764 69999999999999999999999876544322 111222222333 57999
Q ss_pred CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
++++|+|+||++++. ++++.+..... ...+.+++.|.+
T Consensus 257 lg~gg~~ig~~~~~~--------~i~~~~~~~~~~~t~~~~~~~~aa 295 (396)
T PRK04073 257 LGGGVFPISCVAANR--------DILGVFTPGSHGSTFGGNPLACAV 295 (396)
T ss_pred ccCCCCcceEEEEcH--------HHHhhhcCCCCCCCCCCCHHHHHH
Confidence 999999999999843 46666654322 233456666543
No 214
>PRK05968 hypothetical protein; Provisional
Probab=99.79 E-value=1.2e-17 Score=152.40 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCceEEEeecC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQVEVRHFDLL 161 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~ 161 (301)
..+|++.+++++. .+..+++++++.|+..++.+++++||+|+++.+.|.+. ...+...|+++.+++.
T Consensus 65 ~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~- 135 (389)
T PRK05968 65 VRAFEEMLAKLEG--------AEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG- 135 (389)
T ss_pred HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC-
Confidence 5789999999872 23456667778999999999999999999999999863 3456678999988864
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
.|++.+++.+ +++++|++++|+|+++.. .++++|+++|+++|+++|+|++|....+.. ++. ++.
T Consensus 136 ------~d~~~l~~~i-~~tklV~ie~pt~~~~~~---~dl~~i~~la~~~gi~vivD~a~a~~~~~~----p~~-~g~- 199 (389)
T PRK05968 136 ------RDEEAVAKAL-PGAKLLYLESPTSWVFEL---QDVAALAALAKRHGVVTMIDNSWASPVFQR----PIT-LGV- 199 (389)
T ss_pred ------CCHHHHHHhc-ccCCEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCcchhccC----chh-cCC-
Confidence 3788999887 568999998777666544 569999999999999999999998755332 121 121
Q ss_pred CCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213 242 VPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
.+++.|+||.++.+| .+.|+++.+. +++++++..
T Consensus 200 --Divv~S~tK~l~g~~~~~gG~i~~~~--------~~~~~l~~~ 234 (389)
T PRK05968 200 --DLVIHSASKYLGGHSDTVAGVVAGSK--------EHIARINAE 234 (389)
T ss_pred --cEEEeeccccccCCCCeEEEEEEECH--------HHHHHHHHH
Confidence 288889999988865 5788887532 366666653
No 215
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.78 E-value=1.6e-17 Score=148.91 Aligned_cols=216 Identities=22% Similarity=0.209 Sum_probs=169.6
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC------CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK------FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT 113 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t 113 (301)
++++++||+.+|. ..|...+.+.+++.+.++... -.-++...-+.+|.+.+|+|+ ..+..++.
T Consensus 37 ~~~~~~nf~SNdY---LGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~--------g~e~al~f 105 (388)
T COG0156 37 DGRKVLNFCSNDY---LGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL--------GAEAALLF 105 (388)
T ss_pred CCceeEeeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh--------CCCcEEEE
Confidence 3678999999994 457777889999988887521 111333333678889999998 45688888
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEc
Q 022213 114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVII 187 (301)
Q Consensus 114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~ 187 (301)
+++..|...++.+|++++|.|+...-.|.+....++..+.+.+.+.. .|++.|++.+.+ +.+.|++.
T Consensus 106 ~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~Ivte 178 (388)
T COG0156 106 SSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTE 178 (388)
T ss_pred cccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEe
Confidence 88899999999999999999999999999999999988988887764 578999988865 23556666
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC--CCCCEEEEecCcccCCCCcceeEEEE
Q 022213 188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG--SIVPVITLGSISKRWLVPGWRFGWLV 265 (301)
Q Consensus 188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~--~~~~vi~~~s~SK~~~~~G~rvG~~~ 265 (301)
..-...|.+.+ +++|++++++|++++++||+|+.-.+++..--....++ .....|+++||||+||..| ||++
T Consensus 179 gVfSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~ 252 (388)
T COG0156 179 GVFSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIA 252 (388)
T ss_pred ccccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceee
Confidence 77888999999 99999999999999999999999888743322222232 2334699999999999998 9998
Q ss_pred eeCCCCcccchhHHHHHHhhhc
Q 022213 266 TNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
++. .+++.+++...
T Consensus 253 g~~--------~~~d~L~~~ar 266 (388)
T COG0156 253 GSA--------ALIDYLRNRAR 266 (388)
T ss_pred CcH--------HHHHHHHHhCC
Confidence 754 48888888643
No 216
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.78 E-value=3.8e-17 Score=149.04 Aligned_cols=190 Identities=22% Similarity=0.279 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCC
Q 022213 62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPG 140 (301)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~ 140 (301)
+.-.+++.++++... |....+..+||+++++++. .++.++++|+++|+..+++++ +++||+|+++.++
T Consensus 10 ~~~~~~v~~~~~~~~---~~~g~~~~~le~~la~~~g--------~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~ 78 (380)
T TIGR03588 10 QDDIDAVVEVLKSDF---LTQGPTVPAFEEALAEYVG--------AKYAVAFNSATSALHIACLALGVGPGDRVWTTPIT 78 (380)
T ss_pred HHHHHHHHHHHhcCC---ccCChhHHHHHHHHHHHHC--------CCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcc
Confidence 344677777776543 3333457899999999983 245677778999999999999 7899999999999
Q ss_pred CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeE
Q 022213 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMV 216 (301)
Q Consensus 141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~i 216 (301)
|..+...+...|+++++++++++ ++.+|++.+++.++ +++++++++ |++|...+ +++|.++|+++|+++
T Consensus 79 ~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~t~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~l 151 (380)
T TIGR03588 79 FVATANCALYCGAKVDFVDIDPD-TGNIDEDALEKKLAAAKGKLPKAIVPV---DFAGKSVD---MQAIAALAKKHGLKI 151 (380)
T ss_pred hHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHhhcccCCCceEEEEe---CCCCccCC---HHHHHHHHHHcCCEE
Confidence 99998888999999999998653 46799999999998 677877754 56898887 888899999999999
Q ss_pred EEccCCcccc-cCCCCCCCccc--cCCCCCEEEEecCc--ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213 217 VADEVYGHLT-FGSIPYTPMGL--FGSIVPVITLGSIS--KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 217 i~D~~y~~~~-~~~~~~~~~~~--~~~~~~vi~~~s~S--K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
|+|++++... +.+. .+.. +. -+.+.|++ |.++.+ ..|+++..++ ++.++++..
T Consensus 152 I~D~a~a~g~~~~~~---~~g~~~~~----d~~~~S~~~~K~~~~~--~GG~v~~~~~-------~~~~~~~~~ 209 (380)
T TIGR03588 152 IEDASHALGAEYGGK---PVGNCRYA----DATVFSFHPVKIITTA--EGGAVTTNDE-------ELAERMRLL 209 (380)
T ss_pred EEECCCcccCccCCE---eCCCcccc----ceEEEecCCCCccccc--CceEEEECCH-------HHHHHHHHH
Confidence 9999998643 3332 1222 22 26677766 876543 4677776543 466666654
No 217
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.78 E-value=2.1e-17 Score=145.96 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=149.6
Q ss_pred CChHHHHHHHHHHHhcC-----CCCCCCC--CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh--cC
Q 022213 59 RTAVEAEDAIVDAVRSG-----KFNCYAT--NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL--AR 129 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~-----~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l--~~ 129 (301)
++.+.+.++|...+... ..+.|+. ...+.+.|+.||+++ ++++++|++|+|+||+.++++... ..
T Consensus 12 p~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll------ga~~~eIiFTSG~TEsnNlaI~g~~~a~ 85 (386)
T COG1104 12 PVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL------GADPEEIIFTSGATESNNLAIKGAALAY 85 (386)
T ss_pred CCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh------CCCCCeEEEecCCcHHHHHHHHhhHHhh
Confidence 34567888887776531 1333432 123677889999998 678899999999999999999973 22
Q ss_pred ----CCCEEEEcCCCCcchHHHHHhc---CceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213 130 ----PGANVLLPRPGWPYYEGIAQRK---QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL 202 (301)
Q Consensus 130 ----~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l 202 (301)
.|.+|+++.-.|+.....++.+ |.++.+++++. +..+|+++|++++++++.+|.+...||.||++++ +
T Consensus 86 ~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~--~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp---I 160 (386)
T COG1104 86 RNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDS--NGLVDLEQLEEALRPDTILVSIMHANNETGTIQP---I 160 (386)
T ss_pred hcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCC--CCeEcHHHHHHhcCCCceEEEEEecccCeeeccc---H
Confidence 4789999999999876666655 99999999865 3459999999999999999999999999999999 9
Q ss_pred HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213 203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
++|.++|+++++++.+|.+.+. |+-+..+..+.-+ +...|-+|.+|..| +|.+++
T Consensus 161 ~ei~~i~k~~~i~fHvDAvQa~----Gkipi~~~~~~vD---~ls~SaHK~~GpkG--iGaLyv 215 (386)
T COG1104 161 AEIGEICKERGILFHVDAVQAV----GKIPIDLEELGVD---LLSFSAHKFGGPKG--IGALYV 215 (386)
T ss_pred HHHHHHHHHcCCeEEEehhhhc----CceeccccccCcc---eEEeehhhccCCCc--eEEEEE
Confidence 9999999999999999999987 5555555443322 66779999988888 777776
No 218
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.78 E-value=3e-17 Score=149.05 Aligned_cols=192 Identities=20% Similarity=0.181 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHhcCC--CCCCCCCCCCH----HHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC----C
Q 022213 61 AVEAEDAIVDAVRSGK--FNCYATNSGIP----PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR----P 130 (301)
Q Consensus 61 ~~~~~~~~~~~~~~~~--~~~Y~~~~g~~----~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~----~ 130 (301)
.+.+.+++.+.+.... ...| .+.. ++++.+++++ | .+.+++++++|+++++..+++++.+ +
T Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~----g--~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~ 103 (371)
T PRK13520 33 HPIARKAHEMFLETNLGDPGLF---PGTAKLEEEAVEMLGELL----H--LPDAYGYITSGGTEANIQAVRAARNLAKAE 103 (371)
T ss_pred hHHHHHHHHHHHhcCCCCcccC---ccHHHHHHHHHHHHHHHh----C--CCCCCeEEecCcHHHHHHHHHHHHhhccCC
Confidence 4566788877776321 1112 1333 4555555555 3 4556789999999999999887754 5
Q ss_pred CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 022213 131 GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR 210 (301)
Q Consensus 131 gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~ 210 (301)
||+|++.++.|..+...++..|.+++.++.+ .++.+|++.+++.++++++.+++++++|+||.+.+ +++|.++|+
T Consensus 104 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~---l~~I~~l~~ 178 (371)
T PRK13520 104 KPNIVVPESAHFSFDKAADMLGVELRRAPLD--DDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDP---IPELSKIAL 178 (371)
T ss_pred CceEEecCcchHHHHHHHHHcCceEEEecCC--CCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHH
Confidence 7999999999999988888899999988864 34568999999999888888888889999999999 888888899
Q ss_pred hCCCeEEEccCCcccccCC-CCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 211 KLRVMVVADEVYGHLTFGS-IPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 211 ~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
++|+++++|++|..+...- .....+. +....-..+..|.+|. +++|.++|++++.+
T Consensus 179 ~~g~~livD~a~~~~~~~~~~~~~~~~-~~~~~vd~~~~s~~K~-~~a~~~~G~~~~~~ 235 (371)
T PRK13520 179 ENGIFLHVDAAFGGFVIPFLDDPPNFD-FSLPGVDSITIDPHKM-GLAPIPAGGILFRD 235 (371)
T ss_pred HcCCCEEEEecchhHHHHhhcCCCCcc-ccCCCCceEEECCccc-cCccCCceEEEEcC
Confidence 9999999999998654210 1111111 1110111444578885 77889999988754
No 219
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.77 E-value=2.2e-17 Score=152.23 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLL 161 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~ 161 (301)
...|++.++++. ..+..+++++++.|+..++++++++||+|+++.+.|.+.. ..+...|+++++++.
T Consensus 65 ~~~le~~lA~l~--------g~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~- 135 (427)
T PRK05994 65 NAVLEERVAALE--------GGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA- 135 (427)
T ss_pred HHHHHHHHHHHh--------CCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC-
Confidence 467888888887 2346889999999999999999999999999999998643 345678999988864
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
.|++.+++.+++++++|++++|+||+|.+++ +++|+++|+++|+++|+|+++..... ..++ .++.+
T Consensus 136 ------~d~~~l~~ai~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~----~~pl-~~gaD 201 (427)
T PRK05994 136 ------DDPASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYL----IRPI-EHGAD 201 (427)
T ss_pred ------CCHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccccc----CCcc-ccCCc
Confidence 3788999999888999999999999999999 88889999999999999999985321 1222 12222
Q ss_pred CCEEEEecCcccCCCCcceeEEEEee
Q 022213 242 VPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+++.|++|.++.+|-.+|.+++.
T Consensus 202 ---ivv~S~tK~lgg~~~~~gG~v~~ 224 (427)
T PRK05994 202 ---IVVHSLTKFLGGHGNSMGGIIVD 224 (427)
T ss_pred ---EEEEcCccccCCCCCcEEEEEEe
Confidence 88999999998888778877663
No 220
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.77 E-value=3.9e-17 Score=147.26 Aligned_cols=186 Identities=20% Similarity=0.245 Sum_probs=138.9
Q ss_pred HHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCCcch
Q 022213 66 DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPGWPYY 144 (301)
Q Consensus 66 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~ 144 (301)
+++.+.+.++. |.......++++.+++++. .+++++++|+++++..++.++ .++||+|+++.++|..+
T Consensus 3 ~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~--------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~ 71 (352)
T cd00616 3 EAVEEVLDSGW---LTLGPKVREFEKAFAEYLG--------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVAT 71 (352)
T ss_pred HHHHHHHHcCC---ccCCHHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHH
Confidence 45556665443 3333357899999999982 357888999999999999999 58999999999999999
Q ss_pred HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc
Q 022213 145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH 224 (301)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~ 224 (301)
...+...|.+++.++++. .++.+|++.+++.++++++++++++ ++|...+ +++|.++|+++|+++|+|++++.
T Consensus 72 ~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~ 144 (352)
T cd00616 72 ANAILLLGATPVFVDIDP-DTYNIDPELIEAAITPRTKAIIPVH---LYGNPAD---MDAIMAIAKRHGLPVIEDAAQAL 144 (352)
T ss_pred HHHHHHcCCeEEEEecCC-CcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCC---HHHHHHHHHHcCCeEEEECCCCC
Confidence 888899999999998854 3567899999999988888888654 6899888 78888889999999999999985
Q ss_pred ccc-CCCCCCCccccCCCCCEEEEecCc--ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213 225 LTF-GSIPYTPMGLFGSIVPVITLGSIS--KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 225 ~~~-~~~~~~~~~~~~~~~~vi~~~s~S--K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
... .+. .+..+. .+.+.|++ |.+ ++.+.|+++..++ ++.++++..
T Consensus 145 g~~~~~~---~~~~~~----d~~~~S~~~~K~~--~~~~gg~~~~~~~-------~~~~~~~~~ 192 (352)
T cd00616 145 GATYKGR---KVGTFG----DAGAFSFHPTKNL--TTGEGGAVVTNDE-------ELAERARLL 192 (352)
T ss_pred CCeECCE---EcccCc----ceeEEcCCCCCCC--cccCceEEEECCH-------HHHHHHHHH
Confidence 332 111 111111 25666766 876 4445688887542 466665544
No 221
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.77 E-value=2.5e-17 Score=149.70 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc------CCCCEEEEcCCCCcchHHHHHhcCceEEEeec
Q 022213 87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA------RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDL 160 (301)
Q Consensus 87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~ 160 (301)
.++++.+++++ +++++++++++|+++++..++.++. ++||+|++++++|.++...++..|++++.++.
T Consensus 62 ~~~~~~la~~~------g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~ 135 (373)
T TIGR03812 62 EEVVGSLGNLL------HLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPL 135 (373)
T ss_pred HHHHHHHHHHh------CCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEEee
Confidence 45666666666 3566788999999999988877664 36799999999999998889999999999987
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccC--C--CCCCCcc
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG--S--IPYTPMG 236 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~--~--~~~~~~~ 236 (301)
+ .++.+|++++++.+++++..+++.+|+||||...+ +++|.++|+++|+++++|++|..+... . .....+.
T Consensus 136 ~--~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d 210 (373)
T TIGR03812 136 D--EDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD 210 (373)
T ss_pred C--CCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc
Confidence 5 34668999999998777765555668999999988 888888899999999999999865421 0 0111111
Q ss_pred ccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 237 LFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 237 ~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
......+ .+..|.+| |++++.|+|+++..+
T Consensus 211 ~~~~~~d-~~~~s~~K-~~~~~~~~G~~~~~~ 240 (373)
T TIGR03812 211 FSLPGVQ-SITIDPHK-MGLSPIPAGGILFRS 240 (373)
T ss_pred ccCCCCC-EEEECccc-cCCCcCCceEEEEeC
Confidence 0000111 44568889 578888999877644
No 222
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.77 E-value=1.8e-17 Score=152.15 Aligned_cols=233 Identities=14% Similarity=0.070 Sum_probs=149.1
Q ss_pred CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCC-CCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNC-YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~-Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
.+++.++++..|--.. +.-...+.+.+++.++++...... +.......+|.+.++++. ..++++++++++
T Consensus 38 ~~g~~~lD~~~~~~~~-~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~SGs 108 (401)
T PRK00854 38 TDGNRYLDCLSAYSAV-NQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALT--------GSHKVLPMNSGA 108 (401)
T ss_pred CCCCEEEEcCcchhhc-cCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhC--------CCCEEEEeCCcH
Confidence 4578889987763211 111235788899998887432211 111112344555565553 236899999999
Q ss_pred HHHHHHHHHhcC---------CC-CEEEEcCCCCcchHHHHHhcCce-------------EEEeecCCCCCCCCCHHHHH
Q 022213 118 QAVEVILSVLAR---------PG-ANVLLPRPGWPYYEGIAQRKQVE-------------VRHFDLLPERNWEVDLDAVE 174 (301)
Q Consensus 118 ~al~~~~~~l~~---------~g-d~Vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~l~ 174 (301)
+|++.+++.+.. +| ++|++..-+|++....+...+.. +..++. .|++.++
T Consensus 109 ~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le 181 (401)
T PRK00854 109 EAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-------GDAEALE 181 (401)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------CCHHHHH
Confidence 999999998852 23 68888888887653333222211 112211 4789999
Q ss_pred hhcccCccEEEEcCCCCCcccCCCH-HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213 175 ALADKNTAAMVIINPGNPCGNVFTY-HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR 253 (301)
Q Consensus 175 ~~~~~~~~~v~l~~p~nptG~~~~~-~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~ 253 (301)
+.+.++++++++.+|+||+|.+++. +.+++|.++|++||+++|+||+|..+.+.+..+ .....+...++++ +||.
T Consensus 182 ~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~-~~~~~g~~~D~~~---~~K~ 257 (401)
T PRK00854 182 AAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLL-AEEHEGIEADVTL---IGKA 257 (401)
T ss_pred HHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHh-HHhhcCCCCCEEE---eccc
Confidence 9998889999999999999999985 469999999999999999999998765544211 1111121223333 3799
Q ss_pred CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
++...+|+||++++. +++..++.... ...+.+++.|.+
T Consensus 258 l~gg~~~ig~v~~~~--------~~~~~l~~~~~~~t~~~~~~~~aa 296 (401)
T PRK00854 258 LSGGFYPVSAVLSNS--------EVLGVLKPGQHGSTFGGNPLACAV 296 (401)
T ss_pred ccCCccCeEEEEEcH--------HHHhcccCCCCCCCCCcCHHHHHH
Confidence 876558999999844 36666653322 222345555543
No 223
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.77 E-value=2.9e-17 Score=148.87 Aligned_cols=161 Identities=19% Similarity=0.191 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEee
Q 022213 84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFD 159 (301)
Q Consensus 84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~ 159 (301)
.+....++.+++.+..-. ..+..++++++++|+..++.+++++||+|+++.|.|.++.. .++..|+++.+++
T Consensus 60 R~gnPt~~~Le~~la~le----~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd 135 (395)
T PRK05967 60 TRGTPTTDALCKAIDALE----GSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYD 135 (395)
T ss_pred CCCChHHHHHHHHHHHHh----CCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeC
Confidence 334455555555554311 13345666668999999999999999999999999998764 4577899988875
Q ss_pred cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
. -+.+.+++++++++++|++++|+||++...+ +++|+++|+++|+++|+|++|....+. .++. ++
T Consensus 136 ~-------~~~e~l~~al~~~TklV~lesPsNP~l~v~d---l~~I~~la~~~g~~vvVD~t~a~p~~~----~pl~-~G 200 (395)
T PRK05967 136 P-------EIGAGIAKLMRPNTKVVHTEAPGSNTFEMQD---IPAIAEAAHRHGAIVMMDNTWATPLYF----RPLD-FG 200 (395)
T ss_pred C-------CCHHHHHHhcCcCceEEEEECCCCCCCcHHH---HHHHHHHHHHhCCEEEEECCccCceec----ChhH-cC
Confidence 3 1347799999889999999999999865554 999999999999999999999864432 1221 23
Q ss_pred CCCCEEEEecCcccCCC-CcceeEEEEe
Q 022213 240 SIVPVITLGSISKRWLV-PGWRFGWLVT 266 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~-~G~rvG~~~~ 266 (301)
-+ |++.|.+|.++. .+.-.|+++.
T Consensus 201 aD---ivv~S~tKy~~Gh~d~~~G~v~~ 225 (395)
T PRK05967 201 VD---ISIHAATKYPSGHSDILLGTVSA 225 (395)
T ss_pred CC---EEEEecccccCCCCCeeEEEEEc
Confidence 33 999999999655 5677776654
No 224
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.76 E-value=7.2e-17 Score=151.02 Aligned_cols=205 Identities=17% Similarity=0.182 Sum_probs=149.9
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCC---CCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHH
Q 022213 47 LGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCY---ATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVI 123 (301)
Q Consensus 47 l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y---~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~ 123 (301)
++.|.| ++..|+.+.+++.+...-..++.| ...+|..+++.++.+++.+.+|. +...+..++|+++.+..+
T Consensus 73 ~g~G~~----~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~--~~~~l~~~~GA~a~~~~l 146 (481)
T PRK04366 73 YPLGSC----TMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGM--DAVTLQPAAGAHGELTGL 146 (481)
T ss_pred ecCccc----CCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCC--CceEEEeCcHHHHHHHHH
Confidence 566664 366777888877664211245567 34668889999999999887764 333455566666655533
Q ss_pred --HH-HhcCCCC----EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccC
Q 022213 124 --LS-VLARPGA----NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNV 196 (301)
Q Consensus 124 --~~-~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~ 196 (301)
++ .+.++|| +|+++.|.|+.+...++..|++++.++++ .++.+|++.+++.++++++++++++|| |||..
T Consensus 147 ~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~--~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~ 223 (481)
T PRK04366 147 LMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSN--EDGLVDLEALKAAVGEDTAALMLTNPN-TLGLF 223 (481)
T ss_pred HHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecC--CCCCcCHHHHHhhcccCCeEEEEeCCC-Ccccc
Confidence 33 3356776 99999999999999999999999999874 346799999999998889999999988 99965
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEEEeeC
Q 022213 197 FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWLVTND 268 (301)
Q Consensus 197 ~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~~~~~ 268 (301)
..++++|+++|+++|+++++|.++.....+. .+...++-+ ++++|.+|+++.| |-.+|++++++
T Consensus 224 --~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~---~~~~~~GaD---~~~~~~hK~l~~P~g~Ggp~~G~l~~~~ 291 (481)
T PRK04366 224 --ERNILEIAEIVHEAGGLLYYDGANLNAILGK---ARPGDMGFD---VVHLNLHKTFSTPHGGGGPGSGPVGVKE 291 (481)
T ss_pred --chHHHHHHHHHHHcCCEEEEEecChhhhccc---CCccccCCC---EEEEechhhcCCCCCCCCCCeeeeeehh
Confidence 3469999999999999999999985322211 122233322 8889999998765 45688887743
No 225
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.76 E-value=3.1e-17 Score=150.73 Aligned_cols=240 Identities=14% Similarity=0.094 Sum_probs=152.2
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.++|+..|--..+-... .+.+.+++.+++.... .++. ....+...++++.+.+.. ..++++++++++
T Consensus 35 d~dG~~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~--~~~~-~~~~~~~~~la~~l~~~~----~~~~v~~~~sGs 106 (406)
T PRK12381 35 DQQGKEYIDFAGGIAVNALGHA-HPALREALNEQASKFW--HTGN-GYTNEPVLRLAKKLIDAT----FADRVFFCNSGA 106 (406)
T ss_pred eCCCCEEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcc--cccC-ccCCHHHHHHHHHHHhhC----CCCeEEEcCCcH
Confidence 4468889999876221111233 6788899998886321 1111 112233444555554321 246999999999
Q ss_pred HHHHHHHHHhcC--------CCCEEEEcCCCCcchHHHHHhcCceEE----EeecCC--CCCCCCCHHHHHhhcccCccE
Q 022213 118 QAVEVILSVLAR--------PGANVLLPRPGWPYYEGIAQRKQVEVR----HFDLLP--ERNWEVDLDAVEALADKNTAA 183 (301)
Q Consensus 118 ~al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~~~~----~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 183 (301)
+|++.+++.... ...+|+..+.+|++........+.... +.++.+ ....-.|++.+++.+++++.+
T Consensus 107 eA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aa 186 (406)
T PRK12381 107 EANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCA 186 (406)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeE
Confidence 999999998631 347899999999987543333222110 001100 001124788999988766666
Q ss_pred EEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213 184 MVIINPGNPCGNVF--TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF 261 (301)
Q Consensus 184 v~l~~p~nptG~~~--~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv 261 (301)
+++ .|.|++|-+. +.+.+++|.++|++||+++|+||+|..+.+.+.. .....++-..++ .++||.++ +|+|+
T Consensus 187 vii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~-~~~~~~~v~pDi---~t~sK~l~-gG~~i 260 (406)
T PRK12381 187 VIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGEL-YAYMHYGVTPDV---LTTAKALG-GGFPI 260 (406)
T ss_pred EEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcch-hhhHhhCCCCCE---EEehhhhh-CCCce
Confidence 655 7999998765 6899999999999999999999999887665542 222222222233 49999976 89999
Q ss_pred EEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 262 GWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 262 G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
||++++. ++++.+..... ...+.+++.|.+
T Consensus 261 g~~~~~~--------~~~~~~~~~~~~~t~~~~pl~~aa 291 (406)
T PRK12381 261 GAMLTTE--------KCASVMTVGTHGTTYGGNPLASAV 291 (406)
T ss_pred EEEEEcH--------HHHhhcCCCCCCCCCCCCHHHHHH
Confidence 9999853 47776654322 223455555543
No 226
>PRK07505 hypothetical protein; Provisional
Probab=99.76 E-value=9.2e-17 Score=147.55 Aligned_cols=217 Identities=18% Similarity=0.170 Sum_probs=139.7
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-CCCCCC-----CCCCHHHHHHHHHHHhhhCCCCCCCCCEE
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-FNCYAT-----NSGIPPARRAIADYLSRDLPYKLSADDVY 111 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-~~~Y~~-----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~ 111 (301)
..+++.++||...++. .+..++.+.+++.++++... ...+.. .....++++.+++++ + . +.+
T Consensus 42 d~~g~~~ld~~s~~~l---gl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~---~~~ 109 (402)
T PRK07505 42 LADGHTFVNFVSCSYL---GLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELF----G--A---SVL 109 (402)
T ss_pred ecCCceEEEeecCCcc---CCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHh----C--C---CEE
Confidence 3457889999776532 33667899999999887421 111111 112344555555554 2 2 555
Q ss_pred EcCCHHHHHHHHHHHhc----CCCC-EEEEcCCCCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213 112 VTLGCKQAVEVILSVLA----RPGA-NVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA 183 (301)
Q Consensus 112 ~t~g~~~al~~~~~~l~----~~gd-~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (301)
++++++++.+.++..+. .+|+ .|++.+..|++.. ......+.+++.++. .|++.+++.+++++++
T Consensus 110 ~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~~~~~ 182 (402)
T PRK07505 110 TFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKTNKTV 182 (402)
T ss_pred EECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhcCCCE
Confidence 55566788887776543 2232 3656665554321 112223456666654 4889999988777789
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCC-CCCccccC--CCCCEEEEecCcccCCCCcce
Q 022213 184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP-YTPMGLFG--SIVPVITLGSISKRWLVPGWR 260 (301)
Q Consensus 184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~-~~~~~~~~--~~~~vi~~~s~SK~~~~~G~r 260 (301)
+++++|+||||.+.+ +++|.++|+++++++|+||+|+...++... ......++ ..+++++++|+||.|+++|
T Consensus 183 ~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G-- 257 (402)
T PRK07505 183 AYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG-- 257 (402)
T ss_pred EEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC--
Confidence 999999999999999 777888899999999999999754443211 11112222 2346899999999999887
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 261 FGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 261 vG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
||+++++ +++++.++...
T Consensus 258 -g~~~~~~-------~~~~~~~~~~~ 275 (402)
T PRK07505 258 -GVIMLGD-------AEQIELILRYA 275 (402)
T ss_pred -eEEEeCC-------HHHHHHHHHhC
Confidence 8886544 24777776654
No 227
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.76 E-value=1.5e-16 Score=146.86 Aligned_cols=210 Identities=20% Similarity=0.221 Sum_probs=146.6
Q ss_pred eeeccCCCCCCCCC-CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213 44 VVPLGYGDPTAFPC-FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV 122 (301)
Q Consensus 44 ~i~l~~g~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~ 122 (301)
+..|+.|.|..... ...+..-.+++.+.+..... .+++ ...+|++++++++. .+++++++|+++++..
T Consensus 25 ~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~~-~~G~--~~~~fe~~lA~~~g--------~~~~v~~~sGt~al~~ 93 (438)
T PRK15407 25 PKPFVPGKSPIPPSGKVIDAKELQNLVDASLDFWL-TTGR--FNDAFEKKLAEFLG--------VRYALLVNSGSSANLL 93 (438)
T ss_pred cccccCCCCCCCcCccCCCHHHHHHHHHHHHhCcc-cCCh--hHHHHHHHHHHHhC--------CCeEEEECCHHHHHHH
Confidence 34478888753111 11122223444444443222 2333 35789999999982 3479999999999999
Q ss_pred HHHHh---------cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc
Q 022213 123 ILSVL---------ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC 193 (301)
Q Consensus 123 ~~~~l---------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt 193 (301)
++.++ +++||+|+++.++|..+...+...|.++++++++. ..+.+|++.+++.+++++++|+++++ +
T Consensus 94 aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~-~~~~id~~~le~~i~~~tkaVi~~~~---~ 169 (438)
T PRK15407 94 AFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL-PTYNIDASLLEAAVSPKTKAIMIAHT---L 169 (438)
T ss_pred HHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHHcCcCCeEEEEeCC---C
Confidence 99876 37899999999999999888999999999999864 35679999999999888999888774 4
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc-cCCCCCCCccccCCCCCEEEEecCc--ccCCCCcceeEEEEeeCCC
Q 022213 194 GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT-FGSIPYTPMGLFGSIVPVITLGSIS--KRWLVPGWRFGWLVTNDPN 270 (301)
Q Consensus 194 G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~S--K~~~~~G~rvG~~~~~~~~ 270 (301)
|...+ +++|.++|+++|+++|+|++++... +.+. .+..++. +.++||+ |.+.. |- -|+++..++
T Consensus 170 G~p~d---l~~I~~la~~~gi~vIeDaa~a~G~~~~g~---~~G~~gd----~~~fSf~~~k~~~~-ge-GG~l~t~d~- 236 (438)
T PRK15407 170 GNPFD---LAAVKAFCDKHNLWLIEDNCDALGSTYDGR---MTGTFGD----IATLSFYPAHHITM-GE-GGAVFTNDP- 236 (438)
T ss_pred CChhh---HHHHHHHHHHCCCEEEEECccchhhhcCCe---eeeccCc----eEEEeCCCCCCccc-cC-ceEEEECCH-
Confidence 54444 8899999999999999999998643 2222 2333332 5555665 55432 33 488888553
Q ss_pred CcccchhHHHHHHhhhc
Q 022213 271 GIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 271 ~~~~~~~~~~~~~~~~~ 287 (301)
++.++++.+.+
T Consensus 237 ------~l~~~~~~~~~ 247 (438)
T PRK15407 237 ------LLKKIIESFRD 247 (438)
T ss_pred ------HHHHHHHHHHH
Confidence 46666665544
No 228
>PLN02509 cystathionine beta-lyase
Probab=99.76 E-value=6.5e-17 Score=149.42 Aligned_cols=166 Identities=22% Similarity=0.284 Sum_probs=124.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCc
Q 022213 78 NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQV 153 (301)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~ 153 (301)
..|... |.+ .++++.+++.+.. ..++++++++++.++..++ .++++||+|+++.+.|.++. ..+...|+
T Consensus 125 ~~Y~r~-gnp-t~~aLE~~lA~le----g~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~ 197 (464)
T PLN02509 125 YDYTRS-GNP-TRDALESLLAKLD----KADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV 197 (464)
T ss_pred CccCCC-CCH-HHHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCe
Confidence 357654 544 5666777666532 3567788888899997665 57899999999999999875 33456788
Q ss_pred eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC
Q 022213 154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT 233 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~ 233 (301)
++.+++. .|++++++.+++++++|++++|+||+|.+.+ +++|+++|+++|+++|+|++|...... .
T Consensus 198 ~v~~vd~-------~d~e~l~~ai~~~TklV~lesPsNPtG~i~D---l~~I~~lAk~~g~~lIVD~A~a~~~~~----~ 263 (464)
T PLN02509 198 VVKRVNT-------TNLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKIAEMAHAQGALVLVDNSIMSPVLS----R 263 (464)
T ss_pred EEEEeCC-------CCHHHHHHhCCcCCeEEEEECCCCCCCCHHH---HHHHHHHHHHcCCEEEEECCccccccC----C
Confidence 8887753 4689999999888999999999999999765 999999999999999999998754432 1
Q ss_pred CccccCCCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213 234 PMGLFGSIVPVITLGSISKRWLVPG-WRFGWLVTND 268 (301)
Q Consensus 234 ~~~~~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~ 268 (301)
++. +.. .++++|++|.++.+| .-.|.+++.+
T Consensus 264 pl~-~ga---Divv~S~tK~l~G~gdv~gG~v~~~~ 295 (464)
T PLN02509 264 PLE-LGA---DIVMHSATKFIAGHSDVMAGVLAVKG 295 (464)
T ss_pred hhh-cCC---cEEEecCcccccCCCccceeEEEecc
Confidence 121 122 288999999987754 4457776543
No 229
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.75 E-value=1.8e-16 Score=144.12 Aligned_cols=199 Identities=24% Similarity=0.279 Sum_probs=149.3
Q ss_pred CChHHHHHHHHHHHhcCCC----CCCCCC----CCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHh--
Q 022213 59 RTAVEAEDAIVDAVRSGKF----NCYATN----SGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVL-- 127 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~----~~Y~~~----~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l-- 127 (301)
++|+.+.+++.+.+..... ..+... .-+.+.|+.+++++ ++++ ++|++++|++++++.++.++
T Consensus 10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~l------g~~~~~~v~~~~~~t~a~~~~~~~l~~ 83 (371)
T PF00266_consen 10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLL------GAPPDEEVVFTSNGTEALNAVASSLLN 83 (371)
T ss_dssp B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHH------TSSTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhc------CCccccccccccccchhhhhhhhcccc
Confidence 5678899999888763211 011111 11347788888888 4566 78999999999999999999
Q ss_pred -cCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213 128 -ARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL 202 (301)
Q Consensus 128 -~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l 202 (301)
.++||+|++..-.|++.. ...+..|+++..++.... ..+|++.+++.++++++++++++.+|.||..++ +
T Consensus 84 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~--~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~p---i 158 (371)
T PF00266_consen 84 PLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPG--GSLDLEDLEEALNPDTRLVSISHVENSTGVRNP---I 158 (371)
T ss_dssp HGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTT--SSCSHHHHHHHHHTTESEEEEESBETTTTBBSS---H
T ss_pred ccccccccccccccccccccccccccccchhhhcccccccc--chhhhhhhhhhhccccceEEeecccccccEEee---e
Confidence 789999999999998654 444578999999987543 348999999999999999999999999999999 8
Q ss_pred HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHH
Q 022213 203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSI 282 (301)
Q Consensus 203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~ 282 (301)
++|.++|+++|+++++|.+++... .+..+..++-+ ++++|..|.+|.+| +|++++++ +.++++
T Consensus 159 ~~I~~~~~~~~~~~~vD~~~~~g~----~~id~~~~~~D---~~~~s~~Kl~gp~G--~g~l~v~~--------~~~~~~ 221 (371)
T PF00266_consen 159 EEIAKLAHEYGALLVVDAAQSAGC----VPIDLDELGAD---FLVFSSHKLGGPPG--LGFLYVRP--------EAIERL 221 (371)
T ss_dssp HHHHHHHHHTTSEEEEE-TTTTTT----SS--TTTTTES---EEEEESTSTTSSST--EEEEEEEH--------HHHHHH
T ss_pred ceehhhhhccCCceeEechhcccc----ccccccccccc---eeeecccccCCCCc--hhhheehh--------hhhhcc
Confidence 899999999999999999998633 23334433333 89999999444345 78888854 466666
Q ss_pred Hhh
Q 022213 283 KDC 285 (301)
Q Consensus 283 ~~~ 285 (301)
+..
T Consensus 222 ~p~ 224 (371)
T PF00266_consen 222 RPA 224 (371)
T ss_dssp HTS
T ss_pred ccc
Confidence 443
No 230
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.74 E-value=3.2e-16 Score=143.64 Aligned_cols=214 Identities=13% Similarity=0.108 Sum_probs=152.4
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC------CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN------CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+.+++|+..+. -.+...+.++++..+++++.... -++...-+.+|++++|+|+ ..+..++.++
T Consensus 102 r~~l~FsSndY---LGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~--------g~e~all~sS 170 (476)
T PLN02955 102 KKLLLFSGNDY---LGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK--------KKEDCLVCPT 170 (476)
T ss_pred ceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH--------CCCcEEEECC
Confidence 47899999885 35777788999988888742111 1111112467888999988 4678899999
Q ss_pred HHHHHHHHHHHhc--------------CCCCEEEEcCCCCcchHHHHHhc----CceEEEeecCCCCCCCCCHHHHHhhc
Q 022213 116 CKQAVEVILSVLA--------------RPGANVLLPRPGWPYYEGIAQRK----QVEVRHFDLLPERNWEVDLDAVEALA 177 (301)
Q Consensus 116 ~~~al~~~~~~l~--------------~~gd~Vl~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (301)
+..|...++.++. .++|.|+...-.|.+....++.. +.++..++. .|++.|++.+
T Consensus 171 Gy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le~~L 243 (476)
T PLN02955 171 GFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHLNSLL 243 (476)
T ss_pred hHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHHHHHH
Confidence 9999888888872 45677888888888877777655 456655543 5788888877
Q ss_pred cc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCccc
Q 022213 178 DK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKR 253 (301)
Q Consensus 178 ~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~ 253 (301)
+. +.+.|++....++.|.+.+ +++|.++|++||+++|+||+|+.+.++...-.....++. .+..|+++||||+
T Consensus 244 ~~~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA 320 (476)
T PLN02955 244 SSCKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKA 320 (476)
T ss_pred HhCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccc
Confidence 43 3344555555889999999 888888888999999999999988876422222222221 2346999999999
Q ss_pred CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
+|+.| ||++++. ++++.++....
T Consensus 321 ~G~~G---Gfi~gs~--------~~~~~l~~~~~ 343 (476)
T PLN02955 321 AGCHG---GFIACSK--------KWKQLIQSRGR 343 (476)
T ss_pred hhccC---ceeecHH--------HHHHHHHHhCC
Confidence 88777 9998754 47777776543
No 231
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.74 E-value=2e-16 Score=145.55 Aligned_cols=158 Identities=20% Similarity=0.179 Sum_probs=125.4
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~ 160 (301)
....|++.++++. ..+..+++++++.|+..++.+++++||+|+++...|.+.... +...|+++++++
T Consensus 70 ~~~~Le~~lA~l~--------g~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (436)
T PRK07812 70 TQDVVEQRIAALE--------GGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE- 140 (436)
T ss_pred hHHHHHHHHHHHh--------CCCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-
Confidence 3567888888887 335678888999999999999999999999999888765433 345788877774
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
+. .|++.+++++++++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|+++..-.. ..++ .++.
T Consensus 141 d~-----~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~----~~pl-~~Ga 207 (436)
T PRK07812 141 DP-----DDLDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL----IRPL-EHGA 207 (436)
T ss_pred CC-----CCHHHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----CCch-hcCC
Confidence 11 3889999999888999999999999999999 88888999999999999999875221 1222 1222
Q ss_pred CCCEEEEecCcccCCCCcceeEEEEee
Q 022213 241 IVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+ +++.|++|.++..|--+|++++.
T Consensus 208 D---ivv~S~tK~lgg~G~~i~G~vv~ 231 (436)
T PRK07812 208 D---IVVHSATKYLGGHGTAIAGVIVD 231 (436)
T ss_pred C---EEEEecccccCCCCCeEEEEEEc
Confidence 2 77899999999898888888774
No 232
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.73 E-value=3.2e-16 Score=141.97 Aligned_cols=193 Identities=23% Similarity=0.337 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCC
Q 022213 62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRPG 140 (301)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~ 140 (301)
++..+++.+.++++.+..+++ -..+|++++++|+ ..++++.++++|.||.+++.++- ++||+|+++..+
T Consensus 5 ~e~~~~v~~~l~s~~~~~~g~--~~~~fE~~~a~~~--------g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t 74 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLSTYGP--YVEEFEKEFAEYF--------GVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYT 74 (363)
T ss_dssp HHHHHHHHHHHHHTCCSSSSH--HHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS
T ss_pred HHHHHHHHHHHHhCCccCCCH--HHHHHHHHHHHHh--------CCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCc
Confidence 455677888888765444333 4689999999999 46799999999999999999984 799999999999
Q ss_pred CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220 (301)
Q Consensus 141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~ 220 (301)
|......+...|.+++++++++ .++.+|++.+++.+++++++|+++|. -|...+ +.+|.++|+++|+++|+|.
T Consensus 75 ~~~~~~ai~~~G~~pv~~Di~~-~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d---~~~i~~~~~~~~i~lIeD~ 147 (363)
T PF01041_consen 75 FPATASAILWAGAEPVFVDIDP-ETLNIDPEALEKAITPKTKAILVVHL---FGNPAD---MDAIRAIARKHGIPLIEDA 147 (363)
T ss_dssp -THHHHHHHHTT-EEEEE-BET-TTSSB-HHHHHHHHHTTEEEEEEE-G---GGB------HHHHHHHHHHTT-EEEEE-
T ss_pred chHHHHHHHHhccEEEEEeccC-CcCCcCHHHHHHHhccCccEEEEecC---CCCccc---HHHHHHHHHHcCCcEEEcc
Confidence 9999999999999999999975 46789999999999999999987664 455555 8899999999999999999
Q ss_pred CCccccc-CCCCCCCccccCCCCCEEEEecC--cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 221 VYGHLTF-GSIPYTPMGLFGSIVPVITLGSI--SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 221 ~y~~~~~-~~~~~~~~~~~~~~~~vi~~~s~--SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
+++.... .+ ..++.++. +.++|| +|.+ +.-.-|.++..+ +++.++++.+.+
T Consensus 148 a~a~g~~~~g---~~~G~~gd----~~~fSf~~~K~i--~~geGG~v~~~~-------~~~~~~~~~~~~ 201 (363)
T PF01041_consen 148 AQAFGARYKG---RPVGSFGD----IAIFSFHPTKII--TTGEGGAVVTND-------PELAERARALRN 201 (363)
T ss_dssp TTTTT-EETT---EETTSSSS----EEEEESSTTSSS---SSS-EEEEEST-------HHHHHHHHHHTB
T ss_pred ccccCceeCC---EeccCCCC----ceEecCCCCCCC--cCCCCeeEEecH-------HHHHHHhhhhhc
Confidence 9997542 22 22333332 667777 5775 333348888755 357888887665
No 233
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=6.5e-16 Score=137.57 Aligned_cols=192 Identities=21% Similarity=0.283 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCC
Q 022213 62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPG 140 (301)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~ 140 (301)
..-.+++.+.++++.+.. ++ -..+|.+++++|+ ...+.+.++++|.|+.+++++| ..|||.|+++.-+
T Consensus 15 ~~e~~~v~~vl~sg~i~~-G~--~v~~FE~~~ae~~--------G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~T 83 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG-GP--FVRRFEQAFAEYL--------GVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFT 83 (374)
T ss_pred hHHHHHHHHHHHcCCeec-Ch--HHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCc
Confidence 566788888888776543 33 4689999999998 5679999999999999999977 4899999999999
Q ss_pred CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220 (301)
Q Consensus 141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~ 220 (301)
|....+.+...|++++++|++++ .+.+|++.+++++.+++|+|+..| --|...+ +++|.++|++||++||+|.
T Consensus 84 fvATan~i~~~Ga~PVFvDid~~-T~nid~~~ie~aIt~~tKAIipVh---l~G~~~d---m~~i~~la~~~~l~vIEDa 156 (374)
T COG0399 84 FVATANAVLLVGAKPVFVDIDPD-TLNIDPDLIEAAITPRTKAIIPVH---LAGQPCD---MDAIMALAKRHGLPVIEDA 156 (374)
T ss_pred hHHHHHHHHHcCCeEEEEecCCc-ccCCCHHHHHHHcccCCeEEEEeh---hccCCCC---HHHHHHHHHHcCCeEEEEc
Confidence 99999999999999999999764 567999999999999999998555 3455566 8888888889999999999
Q ss_pred CCcccc-cCCCCCCCccccCCCCCEEEEecC--cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 221 VYGHLT-FGSIPYTPMGLFGSIVPVITLGSI--SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 221 ~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~--SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
+++.-. |.++. ++.++. +.++|| +|.+... --|.++..+ +++.++++.++.
T Consensus 157 Aqa~Ga~y~gk~---vGt~Gd----~~~fSF~~~K~ittg--EGGav~tnd-------~ela~k~~~lr~ 210 (374)
T COG0399 157 AQAHGATYKGKK---VGSFGD----IGAFSFHATKNLTTG--EGGAVVTND-------EELAEKARSLRN 210 (374)
T ss_pred chhccCeecCcc---cccccc----eEEEEecCCCCcccc--CceEEEeCC-------HHHHHHHHHHHH
Confidence 998643 33432 333332 444454 6775433 457777644 467788877654
No 234
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.72 E-value=4.2e-16 Score=143.13 Aligned_cols=241 Identities=13% Similarity=0.052 Sum_probs=148.7
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+++|..|.-.. ..-..++.+.+++.++++.... .......+..+.+.+.+.+.. ..+.++++++++
T Consensus 27 d~dg~~~lD~~~~~~~~-~~Gh~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SGs 98 (400)
T PTZ00125 27 DVEGKKYYDFLSAYSAV-NQGHCHPKILAALINQAQKLTL---TSRAFYNDVLGLAEKYITDLF----GYDKVLPMNSGA 98 (400)
T ss_pred eCCCCEEEEcccCHhhc-cCCcCCHHHHHHHHHHHHhccc---ccccccCHHHHHHHHHHHhCC----CCCEEEEeCCcH
Confidence 34678899998773221 1112467889999988763221 111111234445555554422 236899999999
Q ss_pred HHHHHHHHHhcC----------CCCEEEEcCCCCcchHHHHHhc-CceEE---EeecCCC--CCCCCCHHHHHhhcc-cC
Q 022213 118 QAVEVILSVLAR----------PGANVLLPRPGWPYYEGIAQRK-QVEVR---HFDLLPE--RNWEVDLDAVEALAD-KN 180 (301)
Q Consensus 118 ~al~~~~~~l~~----------~gd~Vl~~~p~~~~~~~~~~~~-g~~~~---~~~~~~~--~~~~~~~~~l~~~~~-~~ 180 (301)
+|.+.+++.+.. .+++|+..+-+|++........ +.... +.+..+. .-.-.|++.+++.++ .+
T Consensus 99 ~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 178 (400)
T PTZ00125 99 EAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPN 178 (400)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCC
Confidence 999999997741 3478888888888753332222 21110 0010000 000138899999886 56
Q ss_pred ccEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcc
Q 022213 181 TAAMVIINPGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW 259 (301)
Q Consensus 181 ~~~v~l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~ 259 (301)
++++++..++||||.+++ .+.+++|.++|++||+++|+||+|..+.+.+..+ .........+++ ++||.++.+++
T Consensus 179 ~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~-~~~~~~~~pd~~---~~sK~l~~g~~ 254 (400)
T PTZ00125 179 VAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL-AHDHEGVKPDIV---LLGKALSGGLY 254 (400)
T ss_pred eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh-HHHhcCCCCCEE---EEcccccCCCc
Confidence 778888788999999986 4569999999999999999999998766554321 111122122333 47899876556
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213 260 RFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV 298 (301)
Q Consensus 260 rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~ 298 (301)
|+||+++++ ++++.+..... ...+.+++.|.
T Consensus 255 ~ig~v~~~~--------~~~~~~~~~~~~~t~~~~~~~~~ 286 (400)
T PTZ00125 255 PISAVLAND--------DVMLVIKPGEHGSTYGGNPLACA 286 (400)
T ss_pred CcEEEEEcH--------HHHhhccCCCCCCCCCcCHHHHH
Confidence 999999854 46666654322 22234555554
No 235
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.72 E-value=6.2e-16 Score=140.52 Aligned_cols=199 Identities=16% Similarity=0.047 Sum_probs=129.7
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC-------CCCCCCC------CCCCHHHHHHHHHHHhhhCCCCCCC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG-------KFNCYAT------NSGIPPARRAIADYLSRDLPYKLSA 107 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~-------~~~~Y~~------~~g~~~lr~~ia~~l~~~~~~~~~~ 107 (301)
.+.+++|+..+. -++...+.+.+++.+++..- ..+..+. ..-+.++|+.+|+++. .+
T Consensus 3 ~~~~~~~~s~~Y---L~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~------~~- 72 (370)
T PRK05937 3 ESLSIDFVTNDF---LGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG------AP- 72 (370)
T ss_pred CCceEEeECCCc---cCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhC------CC-
Confidence 467899999984 35667777777777776532 1111222 1125678888888872 22
Q ss_pred CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------Cc
Q 022213 108 DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NT 181 (301)
Q Consensus 108 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~ 181 (301)
+.+++++| +.++..++..+.++||.|++..-.|......++......+.++ ..|++.+++.++. ++
T Consensus 73 ~~l~~~sG-~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~ 144 (370)
T PRK05937 73 EAFIVPSG-YMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFR-------HNDLDHLESLLESCRQRSFGR 144 (370)
T ss_pred eEEEECCh-HHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHhhhccCCCc
Confidence 23555555 5666666666667888888888888776666655432222232 1588888888762 34
Q ss_pred cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcce
Q 022213 182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWR 260 (301)
Q Consensus 182 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~r 260 (301)
+++++++++|++|.+.+ +++|.++|+++|+++++|++|+...++.........+.-....+.+.||||.+|..|.+
T Consensus 145 ~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~~ 220 (370)
T PRK05937 145 IFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGAA 220 (370)
T ss_pred EEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCceE
Confidence 46678899999999999 88888889999999999999996444321100001111111236788999999887743
No 236
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.71 E-value=3.7e-16 Score=144.41 Aligned_cols=245 Identities=12% Similarity=0.062 Sum_probs=150.7
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.++++..|..... .-..++.+.+++.+++..... .+....+.. ...++++++....+.+. .++++++++++
T Consensus 37 d~dG~~~lD~~~g~~~~~-lGh~~~~i~~a~~~~~~~~~~-~~~~~~~~~-~~~~la~~l~~~~~~~~-~~~~~f~~sGs 112 (425)
T PRK08088 37 DVEGREYLDFAGGIAVLN-TGHLHPKVVAAVEAQLKKLSH-TCFQVLAYE-PYLELCEKMNQKVPGDF-AKKTLLVTTGS 112 (425)
T ss_pred eCCCCEEEEcCCchhhcC-CCCCCHHHHHHHHHHHhhCCC-ccccccCCH-HHHHHHHHHHHhCCCCC-CCEEEEeCCcH
Confidence 456888999988754321 122467888999988874332 122211223 44578888876444222 24778888888
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEE--------------EeecCC-CCCCCC--CHHHHHhhcc
Q 022213 118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVR--------------HFDLLP-ERNWEV--DLDAVEALAD 178 (301)
Q Consensus 118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~--------------~~~~~~-~~~~~~--~~~~l~~~~~ 178 (301)
+|++.+++.... ...+|+...++|++....+...+.... .++... ..+... +++.+++.++
T Consensus 113 ea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~ 192 (425)
T PRK08088 113 EAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFK 192 (425)
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHH
Confidence 988888876642 234667669999987555444332111 011100 011101 1455777664
Q ss_pred ----cCccEEEEcCC--CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcc
Q 022213 179 ----KNTAAMVIINP--GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISK 252 (301)
Q Consensus 179 ----~~~~~v~l~~p--~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK 252 (301)
.+..+.++..| +++.....+.+.+++|.++|++|++++|+||+|..+.+.+. ..++...+ .+.-+.||||
T Consensus 193 ~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~-~~~~~~~~---~~pdi~s~sK 268 (425)
T PRK08088 193 NDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMG---VAADLTTFAK 268 (425)
T ss_pred hccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhHHhhcC---CCCCEEEEec
Confidence 12234455555 67777788999999999999999999999999998655442 22222222 2244689999
Q ss_pred cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
.++ +|+|+||++++. ++++.+..... ...+.+++.|.+
T Consensus 269 ~l~-~G~rig~v~~~~--------~~~~~~~~~~~~~t~~~~~~~~~a 307 (425)
T PRK08088 269 SIA-GGFPLAGVTGRA--------EVMDAIAPGGLGGTYAGNPIACAA 307 (425)
T ss_pred ccc-CCCcceeeEecH--------HHHhhcCCCCCCCCCCcCHHHHHH
Confidence 976 999999999853 46666654432 233556676654
No 237
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.71 E-value=8.2e-16 Score=139.99 Aligned_cols=238 Identities=12% Similarity=0.087 Sum_probs=153.3
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGC 116 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~ 116 (301)
..+++.+|++..|.-.. .++..+.+.+++.++++... .+.. ....++++++++.+.. .++ .+++++++
T Consensus 25 d~dg~~~lD~~s~~~~~--~lG~~p~v~~a~~~~~~~~~--~~~~-~~~~~~~~~la~~l~~------~~~~~~~~~~SG 93 (375)
T PRK04260 25 DTDGKKYLDFSSGIGVT--NLGFHPQVQQALQKQAGLIW--HSPN-LYLNSLQEEVAQKLIG------DKDYLAFFCNSG 93 (375)
T ss_pred eCCCCEEEECCCCcccc--cCCCCHHHHHHHHHHHHhcC--cccC-ccCCHHHHHHHHHHhc------CcCCEEEEcCcc
Confidence 34578899998773211 24446779999999886421 2322 3456789999987732 223 46899999
Q ss_pred HHHHHHHHHHhc--CCCCEEEEcCCCCcchH-HHHHhcCceEE--Ee--ecCCCC-CCCCCHHHHHhhcccCccEEEEcC
Q 022213 117 KQAVEVILSVLA--RPGANVLLPRPGWPYYE-GIAQRKQVEVR--HF--DLLPER-NWEVDLDAVEALADKNTAAMVIIN 188 (301)
Q Consensus 117 ~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~--~~--~~~~~~-~~~~~~~~l~~~~~~~~~~v~l~~ 188 (301)
++++..+++... ..+++|++.+.+|++.. ......+.+.. .. ...... ..-.|++.+++.++++..++++..
T Consensus 94 seA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~~~a~vi~e~ 173 (375)
T PRK04260 94 AEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNKNTAAVMLEL 173 (375)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCCCeEEEEECC
Confidence 999999988774 34678999888888642 22222221110 00 000000 001478999988876777888888
Q ss_pred CCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213 189 PGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 189 p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
++|++|...+ .+.++++.++|+++|+++|+||+|..+...+. ..+...++...++ .||||.++ +|+|+||++++
T Consensus 174 v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~-~~~~~~~~~~pdi---~t~sK~l~-~G~~ig~~~~~ 248 (375)
T PRK04260 174 VQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK-LYAFEHYGIEPDI---FTLAKGLA-NGVPVGAMLAK 248 (375)
T ss_pred eECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhHhhCCCCCE---EEeccccc-CCcceEEEEEc
Confidence 9999998754 57899999999999999999999987655443 2222222222333 38999965 79999999985
Q ss_pred CCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 268 DPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
+ ++.+.+..... ...+.+++.|.+
T Consensus 249 ~--------~~~~~~~~~~~~~t~~~~~~~~~a 273 (375)
T PRK04260 249 S--------SLGGAFGYGSHGSTFGGNKLSMAA 273 (375)
T ss_pred H--------HHHhhcCCCCCCCCCCcCHHHHHH
Confidence 4 35555543222 122345555543
No 238
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.70 E-value=1.1e-15 Score=138.48 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeecC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDLL 161 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~ 161 (301)
...|.+.+|++- ..+..+++++++.|+..++.+++++||+|+++...|.+...+ ++..|+++.+++.
T Consensus 64 ~~~le~~la~LE--------g~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~- 134 (395)
T PRK08114 64 HFSLQEAMCELE--------GGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP- 134 (395)
T ss_pred HHHHHHHHHHHh--------CCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-
Confidence 456777777764 356889999999999999999999999999999999776544 4668999988864
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC--CCeEEEccCCcccccCCCCCCCccccC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
.|.+.+++++++++++|++.+|.||+|.+.+ +++|+++|+++ |+++++|++++.-.. +.+ ..++
T Consensus 135 ------~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~----~~p-l~~G 200 (395)
T PRK08114 135 ------LIGADIAKLIQPNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL----FKA-LDFG 200 (395)
T ss_pred ------CCHHHHHHhcCCCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc----cCH-HHcC
Confidence 4678999999989999999999999999999 99999999998 499999999986322 111 1223
Q ss_pred CCCCEEEEecCcccCCCCc-ceeEEEEe
Q 022213 240 SIVPVITLGSISKRWLVPG-WRFGWLVT 266 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~ 266 (301)
-+ |++.|.+|.++.++ ...|.++.
T Consensus 201 aD---ivv~S~tKyl~Ghsdv~~G~v~~ 225 (395)
T PRK08114 201 ID---ISIQAGTKYLVGHSDAMIGTAVA 225 (395)
T ss_pred Cc---EEEEcCcccccCCCcceeEEEEc
Confidence 33 99999999877765 66775554
No 239
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.70 E-value=1.3e-15 Score=139.62 Aligned_cols=219 Identities=16% Similarity=0.146 Sum_probs=140.7
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+||+..|.-..+-.. .++.+.+++.++++... ..+. ....+...++++.+.+.. ..+.++++++++
T Consensus 31 d~dG~~ylD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~--~~~~-~~~~~~~~~la~~L~~~~----~~~~~~f~~SGs 102 (397)
T TIGR03246 31 DQQGKEYIDFAGGIAVNALGH-AHPELVKALIEQADKLW--HIGN-GYTNEPVLRLAKKLVDAT----FADKVFFCNSGA 102 (397)
T ss_pred eCCCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhcc--cccC-ccCCHHHHHHHHHHHhhC----CCCEEEEeCCcH
Confidence 446889999988722111123 46788899998887421 1111 112344455555554422 246999999999
Q ss_pred HHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHH-HhcCce------------EEEeecCCCCCCCCCHHHHHhh
Q 022213 118 QAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIA-QRKQVE------------VRHFDLLPERNWEVDLDAVEAL 176 (301)
Q Consensus 118 ~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~-~~~g~~------------~~~~~~~~~~~~~~~~~~l~~~ 176 (301)
+|.+.+++.... + .++|+..+-+|++..... ...+.. +..++. .|++.+++.
T Consensus 103 eA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~ 175 (397)
T TIGR03246 103 EANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-------NDLAAAKAL 175 (397)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-------CCHHHHHHH
Confidence 999999997731 2 357888777887753322 222211 111111 478999998
Q ss_pred cccCccEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC
Q 022213 177 ADKNTAAMVIINPGNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL 255 (301)
Q Consensus 177 ~~~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~ 255 (301)
+.+++.++++..++++.|... +.+.+++|.++|++||+++|+||+|..+...+..+ ....++-..+++ ++||.++
T Consensus 176 l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~-a~~~~gv~pDi~---t~~K~lg 251 (397)
T TIGR03246 176 ISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVTPDIL---TSAKALG 251 (397)
T ss_pred hccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch-hhhhcCCCCCEE---Eeehhhh
Confidence 876666666664455556543 88999999999999999999999998775544322 222233222333 8899976
Q ss_pred CCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213 256 VPGWRFGWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 256 ~~G~rvG~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
.|+++||++++. ++++.++.
T Consensus 252 -gG~pigav~~~~--------~i~~~~~~ 271 (397)
T TIGR03246 252 -GGFPIGAMLTTT--------EIAAHLKV 271 (397)
T ss_pred -CCcceeEEEEcH--------HHHHhccC
Confidence 799999999843 46666654
No 240
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.67 E-value=3e-15 Score=137.89 Aligned_cols=157 Identities=19% Similarity=0.234 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLL 161 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~ 161 (301)
...+++.+++++ ..+..+++++++.|+.+++.+++++||+|+++...|.+.. ..+...|+++.+++ +
T Consensus 71 ~~~le~~la~l~--------g~~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~ 141 (437)
T PRK05613 71 VEALENRIASLE--------GGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-N 141 (437)
T ss_pred HHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-C
Confidence 467788888886 2245666666669999999998999999999999998763 44577899999887 2
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
+ .|++.+++++++++++|++.++.||+|.+.+ +++|+++|+++|+++|+|.+++.... ..++ .++-+
T Consensus 142 ~-----~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~----~~p~-~~GaD 208 (437)
T PRK05613 142 P-----DDPESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL----VRPL-ELGAD 208 (437)
T ss_pred C-----CCHHHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc----cChH-HhCCC
Confidence 2 2789999999988999988999999999999 88889999999999999999865322 1122 12222
Q ss_pred CCEEEEecCcccCCCCcceeEEEEee
Q 022213 242 VPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+++.|++|.++.+|-.+|-+++.
T Consensus 209 ---ivv~S~~K~l~G~gd~~gG~vv~ 231 (437)
T PRK05613 209 ---VVVASLTKFYTGNGSGLGGVLID 231 (437)
T ss_pred ---EEEeeccceecCCCcceeEEEEe
Confidence 88999999988877777776663
No 241
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.67 E-value=7.6e-15 Score=135.02 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=132.6
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC----CCCCCCCCC---CHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK----FNCYATNSG---IPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~----~~~Y~~~~g---~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
+.++.|+++.-. +.|..+.+++.+.++... ...+....+ ..+.++++ +++ +.++++|++|+
T Consensus 26 ~~~iyld~~a~g-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~------g~~~~~v~~~~ 93 (406)
T TIGR01814 26 NAVIYLDGNSLG-----LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RLV------GAKEDEVVVMN 93 (406)
T ss_pred CCcEEecCCCcC-----cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-ccc------CCCCCcEEEeC
Confidence 568999977632 336778888876654211 111110011 12222333 343 46788999999
Q ss_pred CHHHHHHHHHHHhcCCC---CEEEEcCCCCcchH----HHHHhcCceE----EEeecCCCCCCCCCHHHHHhhcc---cC
Q 022213 115 GCKQAVEVILSVLARPG---ANVLLPRPGWPYYE----GIAQRKQVEV----RHFDLLPERNWEVDLDAVEALAD---KN 180 (301)
Q Consensus 115 g~~~al~~~~~~l~~~g---d~Vl~~~p~~~~~~----~~~~~~g~~~----~~~~~~~~~~~~~~~~~l~~~~~---~~ 180 (301)
|+|++++.++.++.++| +.|++....|++.. ..++..|+++ +.++. ..++.++++.+++.++ ++
T Consensus 94 ~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~--~~~g~~~~~~l~~~~~~~~~~ 171 (406)
T TIGR01814 94 TLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP--REEETLRLEDILDTIEKNGDD 171 (406)
T ss_pred CchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc--CCCCccCHHHHHHHHHhcCCC
Confidence 99999999999987664 36888888998632 2345668776 34443 3344578888888763 57
Q ss_pred ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC-CCc
Q 022213 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL-VPG 258 (301)
Q Consensus 181 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G 258 (301)
++++++++++|.||..++ +++|+++|+++|+++++|++++. +..+..+..++-+ +++.|.+|+++ .||
T Consensus 172 t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~----G~~~id~~~~gvD---~~~~s~hK~l~g~pG 240 (406)
T TIGR01814 172 IAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAV----GNVPLDLHDWGVD---FACWCTYKYLNAGPG 240 (406)
T ss_pred eEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEccccc----CCcccccccCCCC---EEEEcCccccCCCCC
Confidence 889999999999999999 89999999999999999999987 3233333333322 88999999864 455
No 242
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.67 E-value=4.6e-15 Score=134.23 Aligned_cols=169 Identities=24% Similarity=0.297 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----hcCceEEEeecC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFDLL 161 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~ 161 (301)
...|++.++++. ..+.++++++++.|+..++.+++++||+|+++...|.+...+++ ..|+++.+++.
T Consensus 57 ~~~le~~la~Le--------~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~- 127 (386)
T PF01053_consen 57 VRALEQRLAALE--------GGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP- 127 (386)
T ss_dssp HHHHHHHHHHHH--------T-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST-
T ss_pred HHHHHHHHHHhh--------cccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc-
Confidence 346777777776 34789999999999999999999999999999999997765554 47999988864
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-CeEEEccCCcccccCCCCCCCccccCC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR-VMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~-~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
-|++++++++++++++|++..|.||+..+.+ +++|+++|+++| +++|+|+.+...... .++. ++-
T Consensus 128 ------~d~~~l~~~l~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~----~pL~-~Ga 193 (386)
T PF01053_consen 128 ------TDLEALEAALRPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQ----NPLE-LGA 193 (386)
T ss_dssp ------TSHHHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC-----GGG-GT-
T ss_pred ------hhHHHHHhhccccceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeee----ccCc-CCc
Confidence 5889999999999999999999999988888 999999999998 999999999864321 2222 222
Q ss_pred CCCEEEEecCcccCCCCcce-eEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 241 IVPVITLGSISKRWLVPGWR-FGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G~r-vG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
+ |++.|.+|.++..|-- .|.+++++. +++..+++...
T Consensus 194 D---ivv~S~TKyl~Ghsdv~~G~vv~~~~------~~~~~~l~~~~ 231 (386)
T PF01053_consen 194 D---IVVHSATKYLSGHSDVMGGAVVVNGS------SELYDRLREFR 231 (386)
T ss_dssp S---EEEEETTTTTTTSSSE-EEEEEESSH------HHHHHHHHHHH
T ss_pred e---EEEeeccccccCCcceeeEEEEECch------hhhhhhhcchh
Confidence 2 9999999998765544 455554331 24666665543
No 243
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.67 E-value=1.2e-15 Score=141.00 Aligned_cols=225 Identities=15% Similarity=0.100 Sum_probs=142.9
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
++..++..++||..|.+...- -..++.+.+++.++++... ..|.+..+..+|.+.+++.+ . ..+.++++++
T Consensus 44 l~d~dG~~~lD~~~g~~~~~l-Gh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~la~~L~~~~----~---~~~~v~~~~s 114 (426)
T PRK00062 44 LYDVDGNEYIDYVGSWGPMIL-GHAHPEVVEAVIEAAEKGL-SFGAPTELEVELAELVIELV----P---SIEMVRMVNS 114 (426)
T ss_pred EEeCCCCEEEEcccchhhhhc-CCCCHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhC----C---CCCEEEEecC
Confidence 334568899999988654321 1356788999999987633 23333333445555555543 1 3468999999
Q ss_pred HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cce------------EEEeecCCCCCCCCCHHHHHhhccc-
Q 022213 116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QVE------------VRHFDLLPERNWEVDLDAVEALADK- 179 (301)
Q Consensus 116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~~~~~~~l~~~~~~- 179 (301)
+++|++.+++.... .+++|+..+++|+++...+... +.. ...+..........|++.+++.+..
T Consensus 115 GseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~ 194 (426)
T PRK00062 115 GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEY 194 (426)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhC
Confidence 99999999998654 3588999999999875322221 100 0000000000001368888887743
Q ss_pred --CccEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC
Q 022213 180 --NTAAMVIINPGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV 256 (301)
Q Consensus 180 --~~~~v~l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~ 256 (301)
++.++++......+|.+.+ .+.+++|.++|++||+++|+||+|..+.+++ .. ....++-..+ +.++||.++
T Consensus 195 ~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~-~~-~~~~~~~~pD---i~~~gK~l~- 268 (426)
T PRK00062 195 GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL-GG-AQGYYGVTPD---LTTLGKIIG- 268 (426)
T ss_pred CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC-cc-HHHHhCCCcc---hHhhhhHhh-
Confidence 3445555433444788776 7889999999999999999999999874432 11 1112222222 358899986
Q ss_pred CcceeEEEEeeCCCCcccchhHHHHHH
Q 022213 257 PGWRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 257 ~G~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
.|+++|+++++. ++++.++
T Consensus 269 ~G~p~ga~~~~~--------~i~~~~~ 287 (426)
T PRK00062 269 GGLPVGAFGGRR--------EIMEQLA 287 (426)
T ss_pred CCCcceeeeEHH--------HHHHhhc
Confidence 789999998743 4777775
No 244
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.65 E-value=7.9e-15 Score=134.50 Aligned_cols=244 Identities=12% Similarity=0.043 Sum_probs=153.5
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|.-... --..++.+.+++.++++... .+.. ....+...++++.+....+ ..+.++++++
T Consensus 34 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~--~~~~-~~~~~~~~~la~~L~~~~~---~~~~v~f~~s 106 (408)
T PRK04612 34 VWDDQGREYLDLAAGIAVCG-LGHNDPDLVAALTEQAGKLW--HTSN-VFYSAPPLKLAEELVTASR---FAEKVFLCNS 106 (408)
T ss_pred EEECCCCEEEEcCccHhhcc-CCCCCHHHHHHHHHHHHhcc--cccc-ccCCHHHHHHHHHHHhhCC---CCCEEEEcCc
Confidence 33456889999987732111 12245788899998887422 2222 1223455567777654221 1268999999
Q ss_pred HHHHHHHHHHHhcC----C-----CCEEEEcCCCCcchHHHHHhc-CceEE---EeecCCC--CCCCCCHHHHHhhcccC
Q 022213 116 CKQAVEVILSVLAR----P-----GANVLLPRPGWPYYEGIAQRK-QVEVR---HFDLLPE--RNWEVDLDAVEALADKN 180 (301)
Q Consensus 116 ~~~al~~~~~~l~~----~-----gd~Vl~~~p~~~~~~~~~~~~-g~~~~---~~~~~~~--~~~~~~~~~l~~~~~~~ 180 (301)
+++|.+.+++.... . ..+|+....+|++........ +.... +-+..+. .-.-.|++.+++.++.+
T Consensus 107 GseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 186 (408)
T PRK04612 107 GTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGG 186 (408)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCC
Confidence 99999999986642 1 246888888898764333222 21100 0011000 00013788898888766
Q ss_pred ccEEEEcCCCCCcccCCC--HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213 181 TAAMVIINPGNPCGNVFT--YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG 258 (301)
Q Consensus 181 ~~~v~l~~p~nptG~~~~--~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G 258 (301)
..++++..|.+++|.+++ .+.+++|.++|++||+++|+||+|..+.+.+..+ .. ...+....+.+|||.++ +|
T Consensus 187 ~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-a~---~~~~~~pdi~t~~K~l~-~G 261 (408)
T PRK04612 187 DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLF-AH---WQEQVTPDIVTLAKALG-GG 261 (408)
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchh-hh---hhcCCCCCEEEEcchhc-CC
Confidence 778888999888887666 5789999999999999999999999876654321 11 11122456679999976 89
Q ss_pred ceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 259 WRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 259 ~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
+|+||+++++ ++++.+..... ...+.+++.+.+
T Consensus 262 ~piga~~~~~--------~~~~~~~~~~~~~t~~~~p~~~aa 295 (408)
T PRK04612 262 FPIGAMLAGP--------KVAETMQFGAHGTTFGGNPLAAAV 295 (408)
T ss_pred CceEEEEECH--------HHHhhhcCCCcCCCCCCCHHHHHH
Confidence 9999998753 35555544322 222345555543
No 245
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.65 E-value=2.2e-14 Score=132.89 Aligned_cols=244 Identities=13% Similarity=0.066 Sum_probs=147.6
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.++|+..|--... --..++.+.+++.+++.... .+.......+.+.++|+.+....+ ...+.++++++
T Consensus 35 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~ql~~~~--~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~s 109 (443)
T PRK08360 35 VWDIEGNEYIDFLSDAAVQN-VGHNNPRVVKAIKEQTDKLI--HYTPIYGFPVEPLLLAEKLIEIAP--GDNPKVSFGLS 109 (443)
T ss_pred EEECCCCEEEEccccHhhcc-cCCCCHHHHHHHHHHHHhcc--CccccccCcHHHHHHHHHHHHhCC--CCCCEEEEcCC
Confidence 33456889999988722111 12345788899999887432 222222224556667777655322 12258999999
Q ss_pred HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHH-HHhcCc------------eEEEeecCCCC--CCC--------CCH
Q 022213 116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGI-AQRKQV------------EVRHFDLLPER--NWE--------VDL 170 (301)
Q Consensus 116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~-~~~~g~------------~~~~~~~~~~~--~~~--------~~~ 170 (301)
+++|++.+++.... ...+|+...-+|++.... ....+. .+.+++..... .+. .++
T Consensus 110 GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
T PRK08360 110 GSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECV 189 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHH
Confidence 99999999987642 336788888888875322 121121 12222221100 000 123
Q ss_pred HHHHhhcc-----cCccEEEEcCC-CCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213 171 DAVEALAD-----KNTAAMVIINP-GNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP 243 (301)
Q Consensus 171 ~~l~~~~~-----~~~~~v~l~~p-~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~ 243 (301)
+.+++.+. +++.++++ .| +||+|.+++ .+.+++|.++|++||+++|+||+|..+.+.+.. .....++-..+
T Consensus 190 ~~~~~~l~~~~~~~~iAAvi~-eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~-~a~~~~~~~pD 267 (443)
T PRK08360 190 EYIKEKFEGEVYAEGVAALFA-EPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKW-FAIEHFGVEPD 267 (443)
T ss_pred HHHHHHHHhccCCCCeEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccc-hhhhhcCCCCC
Confidence 34555553 23445554 46 699999887 557999999999999999999999987665542 22222333334
Q ss_pred EEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213 244 VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV 298 (301)
Q Consensus 244 vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~ 298 (301)
++ ++||.++ +|+|+||++++. ++++.+..... ...+.+++.|.
T Consensus 268 ii---tlsK~l~-~G~pigav~~~~--------~i~~~~~~~~~~~T~~~~p~~~a 311 (443)
T PRK08360 268 II---TLGKPLG-GGLPISATIGRA--------EIMDSLPPLAHAFTLSGNPVASA 311 (443)
T ss_pred EE---Eeccccc-CCceeEEEEEcH--------HHHhhhcCCCCCCCCCcCHHHHH
Confidence 44 6799987 899999999843 46666654322 22234555543
No 246
>PLN00144 acetylornithine transaminase
Probab=99.65 E-value=4.8e-15 Score=135.02 Aligned_cols=239 Identities=13% Similarity=0.081 Sum_probs=145.7
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.++|+..|.-.. ..-..++.+.+++.+++.... .+.. ....+...++++.+.+.. ..+.++++++++
T Consensus 11 D~dG~~ylD~~~g~~~~-~lGh~~p~v~~ai~~q~~~~~--~~~~-~~~~~~~~~la~~l~~~~----~~~~v~f~~sGs 82 (382)
T PLN00144 11 DVEGKEYLDMAAGIAVN-ALGHGDPDWVKAVAEQAGTLA--HVSN-VYHTIPQVELAKRLVASS----FADRVFFCNSGT 82 (382)
T ss_pred eCCCCEEEECCcCHHhc-cCCCCCHHHHHHHHHHHHhcC--Cccc-cccCHHHHHHHHHHHhcC----CCCeEEEeCCcH
Confidence 34688899997773111 012245788899999887432 1221 122455566777765421 346899999999
Q ss_pred HHHHHHHHHhcC----C-----------CCEEEEcCCCCcchHHHHHhcCceE----EEeecCCCCC--CCCCHHHHHhh
Q 022213 118 QAVEVILSVLAR----P-----------GANVLLPRPGWPYYEGIAQRKQVEV----RHFDLLPERN--WEVDLDAVEAL 176 (301)
Q Consensus 118 ~al~~~~~~l~~----~-----------gd~Vl~~~p~~~~~~~~~~~~g~~~----~~~~~~~~~~--~~~~~~~l~~~ 176 (301)
+|.+.+++.... . ..+|+...-+|++............ .+.+..+... .-.|++.+++.
T Consensus 83 eA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 162 (382)
T PLN00144 83 EANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKL 162 (382)
T ss_pred HHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHh
Confidence 999999986631 0 2478888888987654333322111 0011111000 01368889888
Q ss_pred cccCccEEEEcCC-CCCcccCCC--HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC-ccccCCCCCEEEEecCcc
Q 022213 177 ADKNTAAMVIINP-GNPCGNVFT--YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP-MGLFGSIVPVITLGSISK 252 (301)
Q Consensus 177 ~~~~~~~v~l~~p-~nptG~~~~--~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~-~~~~~~~~~vi~~~s~SK 252 (301)
+.....+.++..| +|| |.+++ .+.+++|.++|++||+++|+||+|..+.+.+..+.. ...+.+ + +.+|||
T Consensus 163 ~~~~~~aavi~eP~q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~P--D---i~t~sK 236 (382)
T PLN00144 163 IQKGKTAAVFVEPVQGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEP--D---IMTLAK 236 (382)
T ss_pred cCCCCeEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCC--C---EEEecc
Confidence 7543333444444 788 44444 455999999999999999999999988766542221 222333 3 568999
Q ss_pred cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
.+ .+|+|+||++++. ++++.+..... .....++++|.+
T Consensus 237 ~l-~~G~pig~v~~~~--------~~~~~~~~~~~~~T~~~~pl~~aa 275 (382)
T PLN00144 237 PL-AGGLPIGAVLVTE--------KVASAINPGDHGSTFAGGPLVCNA 275 (382)
T ss_pred cc-cCCcceEEEEEcH--------HHHhccCCCCCCCCCCCCHHHHHH
Confidence 95 5899999999854 36666543221 223455555543
No 247
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.65 E-value=1.1e-14 Score=133.33 Aligned_cols=186 Identities=15% Similarity=0.190 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH-HHHHHHHHHhcC---CCCEEEEcCCCCcchHHHHHhcCceEEEeec-C
Q 022213 87 PPARRAIADYLSRDLPYKLSADDVYVTLGCK-QAVEVILSVLAR---PGANVLLPRPGWPYYEGIAQRKQVEVRHFDL-L 161 (301)
Q Consensus 87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~-~al~~~~~~l~~---~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~-~ 161 (301)
..+.+.+.+.+.+..|.. +.+..++++|+| .++.+++.++.. +||.|+++.-+|.+....+...|+++++++. .
T Consensus 104 ~~l~~~~e~~~~~~~G~~-~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~ 182 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLR-SIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVL 182 (444)
T ss_pred HHHHHHHHHHHHHHcCCC-CCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeee
Confidence 444444444444444422 124688899999 688888887753 5899999999999999999999999999996 3
Q ss_pred CCCCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213 162 PERNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 238 (301)
.++++.+|++.+++++++ +.+++++.+|+ |+.....+++++|+++|++||+++|+|++|+.....-..... ...
T Consensus 183 d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~-~g~ 259 (444)
T TIGR03531 183 DGDELTTDVEDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELIN-KAI 259 (444)
T ss_pred cCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhh-ccc
Confidence 456788999999999975 34556666665 454445566999999999999999999999953211000000 011
Q ss_pred CCCCC-EEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213 239 GSIVP-VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 239 ~~~~~-vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
. .++ .+++.|++|.+.+||. |+++..++ +++.++++..
T Consensus 260 ~-~Grad~vv~s~hK~l~~pg~--Gg~I~~~d------~el~~~i~~~ 298 (444)
T TIGR03531 260 K-VGRVDAVVSSTDKNFMVPVG--GAIIYSFD------ENFIQEISKS 298 (444)
T ss_pred c-ccCCCeEEEeCccCCCCCCC--EEEEEECC------HHHHHHHHHh
Confidence 1 111 2667899999988876 66664332 3566777654
No 248
>PRK04311 selenocysteine synthase; Provisional
Probab=99.64 E-value=5.4e-14 Score=130.11 Aligned_cols=191 Identities=19% Similarity=0.165 Sum_probs=132.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCC---CC--CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCE
Q 022213 59 RTAVEAEDAIVDAVRSGKFNCYATN---SG--IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN 133 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~Y~~~---~g--~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~ 133 (301)
+.++.+.+++.+.+.+.....|.-. .| +..+++.+++++ ..+..+++++++.|+.+++.++ .+||+
T Consensus 97 ~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~--------Gae~a~vv~sgtaAl~l~l~~l-~~Gde 167 (464)
T PRK04311 97 LLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT--------GAEDALVVNNNAAAVLLALNAL-AAGKE 167 (464)
T ss_pred CCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHh-CCCCE
Confidence 4668888999888764321122211 12 357788888887 3457888899999999988665 78999
Q ss_pred EEEcCCCCcc------hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc--c--cCCCHHHHH
Q 022213 134 VLLPRPGWPY------YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC--G--NVFTYHHLQ 203 (301)
Q Consensus 134 Vl~~~p~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt--G--~~~~~~~l~ 203 (301)
|+++...+.. +...++..|+++++++... ..++++++++++++++++++.+++||+ | ...+ ++
T Consensus 168 VIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~----~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~d---l~ 240 (464)
T PRK04311 168 VIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN----RTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVS---LA 240 (464)
T ss_pred EEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC----CCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCC---HH
Confidence 9998764431 2345677899999887532 257899999999999999999999983 4 4566 99
Q ss_pred HHHHHHHhCCCeEEEccCCcccc----cCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213 204 EIAEMARKLRVMVVADEVYGHLT----FGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 204 ~i~~~~~~~~~~ii~D~~y~~~~----~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+|+++|++||+++|+|...+.+. ++-...+.+......+--++++|.+|.++.| ..|+++++
T Consensus 241 eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp--~~G~i~g~ 306 (464)
T PRK04311 241 ELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP--QAGIIVGK 306 (464)
T ss_pred HHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC--ceEEEEEc
Confidence 99999999999999999654431 2100111121111111228999999997766 48988874
No 249
>PLN02624 ornithine-delta-aminotransferase
Probab=99.63 E-value=1.1e-14 Score=136.02 Aligned_cols=211 Identities=14% Similarity=0.081 Sum_probs=134.2
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+++|..|.-.. ..-...+.+.+++.+++....... .....+....+++.+.+.. ..+.++++++++
T Consensus 71 d~dG~~ylD~~sg~~~~-~~Gh~~p~v~~ai~~ql~~~~~~~---~~~~~~~~~~la~~L~~~~----~~~~~~f~~SGs 142 (474)
T PLN02624 71 DPEGKKYLDFLSAYSAV-NQGHCHPKIIKALTEQAEKLTLSS---RAFYNDKFPEFAEYLTSMF----GYDMVLPMNTGA 142 (474)
T ss_pred ECCCCEEEEcccchhcc-cCCCCCHHHHHHHHHHHHhcCCcc---cccCCHHHHHHHHHHHhhc----CCCeEEEeCChH
Confidence 34577888987763211 111246889999999987532211 1112233333444443322 246899999999
Q ss_pred HHHHHHHHHhcC--------C-CC-EEEEcCCCCcchHHHHHhcCce-------------EEEeecCCCCCCCCCHHHHH
Q 022213 118 QAVEVILSVLAR--------P-GA-NVLLPRPGWPYYEGIAQRKQVE-------------VRHFDLLPERNWEVDLDAVE 174 (301)
Q Consensus 118 ~al~~~~~~l~~--------~-gd-~Vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~l~ 174 (301)
+|.+.+++.... + +. +|+...-+|++........... +..++. .|++.++
T Consensus 143 eA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~ 215 (474)
T PLN02624 143 EGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-------GDLDALE 215 (474)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-------CCHHHHH
Confidence 999999985542 1 22 5777777787653222222111 111111 2678888
Q ss_pred hhccc---CccEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213 175 ALADK---NTAAMVIINPGNPCGNVFTYH-HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI 250 (301)
Q Consensus 175 ~~~~~---~~~~v~l~~p~nptG~~~~~~-~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~ 250 (301)
+.++. +..++++..++|++|.+++.+ .+++|.++|++||+++|+||+|..+.+.+..+ .....+...+++ ++
T Consensus 216 ~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~-a~~~~~i~pDiv---~l 291 (474)
T PLN02624 216 KIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKML-ACDWEEVRPDVV---IL 291 (474)
T ss_pred HHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchh-hHHhcCCCCCEE---Ee
Confidence 87752 456677778899999988776 59999999999999999999998765554322 221122223344 46
Q ss_pred cccCCCCcceeEEEEee
Q 022213 251 SKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 251 SK~~~~~G~rvG~~~~~ 267 (301)
||.++.+++++|+++++
T Consensus 292 sK~lggG~~pigav~~~ 308 (474)
T PLN02624 292 GKALGGGVIPVSAVLAD 308 (474)
T ss_pred cccccCCCCcceeeeec
Confidence 89999888999999974
No 250
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=99.63 E-value=6.2e-17 Score=139.19 Aligned_cols=218 Identities=17% Similarity=0.182 Sum_probs=125.6
Q ss_pred eeccCCCCCCCCCCCChHHHHHHHHH----HHhcCCCCCCCC--CCC---CHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 45 VPLGYGDPTAFPCFRTAVEAEDAIVD----AVRSGKFNCYAT--NSG---IPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 45 i~l~~g~p~~~p~~~~~~~~~~~~~~----~~~~~~~~~Y~~--~~g---~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+|+..|||.++ +.......+ .+.+.....|-. ..+ .++|.+.|.++.....+...+...|++++|
T Consensus 1 ~d~d~GDP~~~------E~yW~~~~~~~avvi~gw~rMSY~~~~~~~~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtG 74 (363)
T PF04864_consen 1 ADADSGDPTFF------EPYWRRHGDSSAVVIPGWHRMSYFSDSSNGWFISPELERQIRRLHRVVGNAVTDGRYIVFGTG 74 (363)
T ss_dssp EEESS---GGG------HHHHCCTHHHH-EEE-TTTT-SSSS-TTSSTTS-HHHHHHHHHHHHHH-SB--TTSEEEEECH
T ss_pred CCcCCCCchhh------HHHHHhcCcceeEEEeccccceeEEecCCceeccHHHHHHHHHHHHHhccccccCcEEEEcCC
Confidence 57889998754 222222221 223444445654 211 478999998888777776677778999999
Q ss_pred HHHHHHHHHHHhcCC---C---CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCC
Q 022213 116 CKQAVEVILSVLARP---G---ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP 189 (301)
Q Consensus 116 ~~~al~~~~~~l~~~---g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 189 (301)
+||.+++++.+|... . -+|+...|.|+.|........-...... -|...+...-+..+-+-++++|
T Consensus 75 sTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~--------Gda~~~~~~~~~~~~IElVTSP 146 (363)
T PF04864_consen 75 STQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWA--------GDASNFKNSDNPSPYIELVTSP 146 (363)
T ss_dssp HHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEE--------EECCCGTT-S-CCGEEEEEESS
T ss_pred HHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccc--------ccHHhhccCCCCCCeEEEEeCC
Confidence 999999999999632 1 4799999999999876654432211111 1222221111123556689999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
|||.|.. .+.++ +..+..+|.|-+|.+-+|.. +..- .++-|.++++||.-|.+|.|+||.++.+
T Consensus 147 NNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTp-----I~~~--aD~DiMLFT~SK~TGHAGSR~GWAlVKD- 210 (363)
T PF04864_consen 147 NNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTP-----ITAP--ADHDIMLFTLSKLTGHAGSRFGWALVKD- 210 (363)
T ss_dssp -TTT-----------SS---TTTEEEEEEE-TT-STTTS--------S---B--SEEEEEHHHHCS-GGG-EEEEEES--
T ss_pred CCCcccc-----cchhc---CCCCcceeeeeeeecccccc-----cCCC--CCCceEEEEEecccCccccccceeeecC-
Confidence 9999998 45554 35567789999999866643 2221 1122899999999999999999999965
Q ss_pred CCcccchhHHHHHHhhhcc-cCCCcccccc
Q 022213 270 NGIFQKSGIIDSIKDCLSI-YSDIPTFIQV 298 (301)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~ 298 (301)
+++.++|..+..+ ..++|.-+|.
T Consensus 211 ------~~Va~kM~~y~~lnTiGvS~dsQL 234 (363)
T PF04864_consen 211 ------EEVAKKMTKYMELNTIGVSRDSQL 234 (363)
T ss_dssp ------HHHHHHHHHHHHHHCSS--HHHHH
T ss_pred ------HHHHHHHHHHHHHhcccCcHHHHH
Confidence 4688999888765 4478877775
No 251
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.63 E-value=2.5e-14 Score=127.32 Aligned_cols=190 Identities=19% Similarity=0.238 Sum_probs=143.7
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEc
Q 022213 58 FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP 137 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~ 137 (301)
.+.++.+++++.+.+ .++..+ -...+.+.+.+.+...++.. +.+-+++++++|.+++.++.++++|||+|++.
T Consensus 14 ~~v~~~V~~am~~~~----~~h~s~--~F~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~ 86 (383)
T COG0075 14 VPVPPRVLLAMARPM----VGHRSP--DFVGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVASLVEPGDKVLVV 86 (383)
T ss_pred CCCCHHHHHHhcCCC----CCCCCH--HHHHHHHHHHHHHHHHhcCC-CCcEEEEcCCcHHHHHHHHHhccCCCCeEEEE
Confidence 456677777765543 222333 12344444444444444422 23557788999999999999999999999999
Q ss_pred CCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 022213 138 RPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR 213 (301)
Q Consensus 138 ~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~ 213 (301)
..+.++ +..+++++|.++..+... .+..++++++++.+++ ..++|+++|.-.+||+..+ +++|+++|++||
T Consensus 87 ~nG~FG~R~~~ia~~~g~~v~~~~~~--wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g 161 (383)
T COG0075 87 VNGKFGERFAEIAERYGAEVVVLEVE--WGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHG 161 (383)
T ss_pred eCChHHHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc---HHHHHHHHHHcC
Confidence 888875 578999999999998875 4456999999999985 4568899999999999999 999999999999
Q ss_pred CeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeC
Q 022213 214 VMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTND 268 (301)
Q Consensus 214 ~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~ 268 (301)
.++|+|.+-+. +.....+..+.-+ +++.+.-|++++ || +|.+.+++
T Consensus 162 ~l~iVDaVsS~----Gg~~~~vd~wgiD---v~itgSQK~l~~PPG--la~v~~S~ 208 (383)
T COG0075 162 ALLIVDAVSSL----GGEPLKVDEWGID---VAITGSQKALGAPPG--LAFVAVSE 208 (383)
T ss_pred CEEEEEecccC----CCcccchhhcCcc---EEEecCchhccCCCc--cceeEECH
Confidence 99999999885 3344456666554 899999999888 57 67777754
No 252
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.62 E-value=3.8e-14 Score=125.71 Aligned_cols=178 Identities=20% Similarity=0.148 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeecC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDLL 161 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~ 161 (301)
...+.+.++++. ...++++++++..|+..++..|+..|++|+.....|.+...+ ....|++..+++.
T Consensus 79 ~~~le~~iaal~--------ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~- 149 (409)
T KOG0053|consen 79 RDVLESGIAALE--------GAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV- 149 (409)
T ss_pred hHHHHHHHHHHh--------CCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech-
Confidence 456777777776 456699999999999999999999999999999999876544 4467888887765
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
-+++++++++++++++|++.+|.||+..+.+ +++|.++|+++|+++|+|+.++...+. ++.+++ .+
T Consensus 150 ------~~~~~~~~~i~~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~--~pL~lG---AD 215 (409)
T KOG0053|consen 150 ------DDLKKILKAIKENTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQ--DPLPLG---AD 215 (409)
T ss_pred ------hhHHHHHHhhccCceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCccccc--ChhhcC---CC
Confidence 4678899999989999999999999999999 888888888999999999999986433 233332 22
Q ss_pred CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccc
Q 022213 242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTF 295 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 295 (301)
|++.|.+|.++...==+|-+++.+. +++.++++.... +.++.+++
T Consensus 216 ---IV~hSaTKyi~Ghsdvi~G~iv~n~------~~~~~~l~~~~~~lg~~~~p~ 261 (409)
T KOG0053|consen 216 ---IVVHSATKYIGGHSDVIGGSVVLNS------EELASRLKFLQEDLGWCEDPF 261 (409)
T ss_pred ---EEEEeeeeeecCCcceeeeEEecCc------HHHHHHHHHHHHHhcCCCCHH
Confidence 9999999999886544444444332 358888887754 45555543
No 253
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.62 E-value=3.8e-14 Score=131.92 Aligned_cols=246 Identities=15% Similarity=0.085 Sum_probs=147.6
Q ss_pred ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
...+++.+||+..|--... --..++.+.+++.++++.... ........+.+..+++.+....+. ...+.+++++++
T Consensus 49 ~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~~--~~~~~~~~~~~~~la~~L~~~~p~-~~~~~v~f~~sG 124 (451)
T PRK06918 49 TDVDGNQYIDFAGAIGTIN-VGHSHPKVKEALHKQVDQYIH--TGFNVMMYEPYIELAEKLAALAPG-SFDKKVLFLNSG 124 (451)
T ss_pred EeCCCCEEEEcCCchhhcC-CCCCCHHHHHHHHHHHHhccC--ccccccccHHHHHHHHHHHHhCCC-CCCCEEEEcCCc
Confidence 3446888999877732111 123456788999998874321 111112245566677766553221 112589999999
Q ss_pred HHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCC--CCCCCC--------H
Q 022213 117 KQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPE--RNWEVD--------L 170 (301)
Q Consensus 117 ~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~--~~~~~~--------~ 170 (301)
++|.+.+++.... ...+|+...-+|++........ +. .+..+|.... ...... .
T Consensus 125 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (451)
T PRK06918 125 AEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMI 204 (451)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHH
Confidence 9999999987642 2367888888898764433322 10 0112221100 000111 1
Q ss_pred HHHHhhc----ccCccEEEEcCCCCCc-ccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCE
Q 022213 171 DAVEALA----DKNTAAMVIINPGNPC-GNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV 244 (301)
Q Consensus 171 ~~l~~~~----~~~~~~v~l~~p~npt-G~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~v 244 (301)
+.+++.+ ..+..+.++..|-... |.++ +.+.+++|.++|++||+++|+||+|..+.+.+. +.++..++...+
T Consensus 205 ~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~-~~a~~~~~v~pD- 282 (451)
T PRK06918 205 EEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGK-YFAIEHFDVVPD- 282 (451)
T ss_pred HHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCc-eehhHhcCCCCC-
Confidence 2233322 2234566777775544 6544 456699999999999999999999999877664 334444443333
Q ss_pred EEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 245 ITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 245 i~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
+.|+||.++ +|+|+||++++. ++++.+..... ...+.++++|.+
T Consensus 283 --i~t~sK~l~-~G~pig~v~~~~--------~i~~~~~~~~~~~T~~g~~l~~aa 327 (451)
T PRK06918 283 --LITVSKSLG-AGVPISGVIGRK--------EIMDESAPGELGGTYAGSPLGCAA 327 (451)
T ss_pred --EEeeehhhc-CCCccEEEEEcH--------HHHhccCCCCcCcCCCcCHHHHHH
Confidence 338999987 899999999853 46666543322 234566666654
No 254
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.61 E-value=2.1e-13 Score=125.83 Aligned_cols=192 Identities=19% Similarity=0.170 Sum_probs=131.9
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCC-----CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCE
Q 022213 59 RTAVEAEDAIVDAVRSGKFNCYATN-----SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN 133 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~Y~~~-----~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~ 133 (301)
+.++.+.+++.+.+.......|.-. .-+..+++.+++++ ..+..+++++++.|+..++.+ +.+||+
T Consensus 92 ~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~--------gae~alvv~sg~aAi~l~l~~-l~~Gde 162 (454)
T TIGR00474 92 PLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELT--------GAEDALVVNNNAAAVLLALNT-LAKGKE 162 (454)
T ss_pred CCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHH-hCCcCE
Confidence 4578889999888773221122211 11367888888887 234567788888999888855 579999
Q ss_pred EEEcCCCCcc------hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc--c--cCCCHHHHH
Q 022213 134 VLLPRPGWPY------YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC--G--NVFTYHHLQ 203 (301)
Q Consensus 134 Vl~~~p~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt--G--~~~~~~~l~ 203 (301)
|++....|.. +...++..|+++++++... ..++++++++++++++++++.+++|++ | ...+ ++
T Consensus 163 VIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~----~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~d---l~ 235 (454)
T TIGR00474 163 VIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN----RTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVS---IA 235 (454)
T ss_pred EEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC----CCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCC---HH
Confidence 9999866432 2345677899999887532 257899999999999999999999985 6 4667 99
Q ss_pred HHHHHHHhCCCeEEEccCCcccc----cCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 204 EIAEMARKLRVMVVADEVYGHLT----FGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 204 ~i~~~~~~~~~~ii~D~~y~~~~----~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+|+++|++||+++++|...+.+. |+-...+.+......+--++++|.+|.++.| ..|+++++.
T Consensus 236 ~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp--~~G~i~g~~ 302 (454)
T TIGR00474 236 ELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP--QAGIIVGKK 302 (454)
T ss_pred HHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC--eEEEEEECH
Confidence 99999999999999998644331 1000111111111111128899999997766 479888753
No 255
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.61 E-value=2.4e-14 Score=131.53 Aligned_cols=219 Identities=13% Similarity=0.117 Sum_probs=137.8
Q ss_pred CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213 39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ 118 (301)
Q Consensus 39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~ 118 (301)
.++..+++|..|-... ..-...+.+.+++.++++... +............+++.+.+..+ .+.+++++++++
T Consensus 34 ~~g~~~lD~~s~~~~~-~~Gh~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~SGs~ 105 (401)
T TIGR01885 34 VEGKRYLDFLSAYSAV-NQGHCHPKIVKALTEQAQKLT---LSSRAFYNDVFGEFAEYVTKLFG----YDKVLPMNTGAE 105 (401)
T ss_pred CCCCEEEEcccCHhhc-cCCCCCHHHHHHHHHHHHhcc---ccccccCCHHHHHHHHHHHhhcC----CCEEEEeCccHH
Confidence 4578899998863221 111236788899988876422 11111112333444444433222 368999999999
Q ss_pred HHHHHHHHhcC---------C-CCEEEEcCCCCcch-HHHHHhcCc------------eEEEeecCCCCCCCCCHHHHHh
Q 022213 119 AVEVILSVLAR---------P-GANVLLPRPGWPYY-EGIAQRKQV------------EVRHFDLLPERNWEVDLDAVEA 175 (301)
Q Consensus 119 al~~~~~~l~~---------~-gd~Vl~~~p~~~~~-~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~l~~ 175 (301)
|++.+++.+.. + .++|+...-+|++. ...+...+. .+..++. .|++.+++
T Consensus 106 A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~ 178 (401)
T TIGR01885 106 AVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEALEE 178 (401)
T ss_pred HHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHHHHH
Confidence 99999998632 2 36777788887753 333332221 1111211 36788888
Q ss_pred hccc---CccEEEEcCCCCCcccCCCH-HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213 176 LADK---NTAAMVIINPGNPCGNVFTY-HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS 251 (301)
Q Consensus 176 ~~~~---~~~~v~l~~p~nptG~~~~~-~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S 251 (301)
.+++ +..++++..+++++|...+. +.+++|.++|++||+++|+||+|..+.+.+..+ ......-..+++ ++|
T Consensus 179 ~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~-~~~~~~~~~di~---~~g 254 (401)
T TIGR01885 179 ALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL-CVDHENVKPDIV---LLG 254 (401)
T ss_pred HHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh-HHhhcCCCCCEE---Eee
Confidence 7752 34566666679999998864 479999999999999999999998765555322 222222223344 467
Q ss_pred ccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213 252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
|.++..|+|+||++++. +++..++.
T Consensus 255 K~l~~g~~~ig~v~~~~--------~i~~~~~~ 279 (401)
T TIGR01885 255 KALSGGVYPVSAVLADD--------DVMLTIKP 279 (401)
T ss_pred ccccCCCCCcEEEEEcH--------HHHhhccC
Confidence 99987779999999743 46666654
No 256
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.61 E-value=6.5e-14 Score=129.17 Aligned_cols=245 Identities=13% Similarity=0.072 Sum_probs=150.0
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|.-... .-..++.+.+++.+++.......+. ....+....+++.+....+ ....+.++++++
T Consensus 34 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~~~~~~~~--~~~~~~~~~la~~l~~~~p-~~~~~~~~f~~s 109 (421)
T PRK09792 34 LKDVEGNEYIDFAAGIAVLN-TGHRHPDLVAAVEQQLQQFTHTAYQ--IVPYESYVTLAEKINALAP-VSGQAKTAFFTT 109 (421)
T ss_pred EEeCCCCEEEEccCchhhhc-CCCCCHHHHHHHHHHHHhccCcccC--ccCCHHHHHHHHHHHHhCC-CCCCceEEEeCC
Confidence 34456888999977732211 1234578889999888743221121 1223455566666654221 112358999999
Q ss_pred HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCCCCC----CHHHHHh
Q 022213 116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERNWEV----DLDAVEA 175 (301)
Q Consensus 116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~~----~~~~l~~ 175 (301)
+++|++.+++.... ...+|+...-+|++........ +. .+..++..... ... +++.+++
T Consensus 110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~ 188 (421)
T PRK09792 110 GAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIER 188 (421)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHH
Confidence 99999999987752 2357888888898763322221 11 11222221110 011 3467777
Q ss_pred hccc-----CccEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEec
Q 022213 176 LADK-----NTAAMVIINPGNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGS 249 (301)
Q Consensus 176 ~~~~-----~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s 249 (301)
.+.+ +..++++.-.++++|..+ +.+.+++|.++|++||+++|+||++..+.+.+. ...+..++...+ +.+
T Consensus 189 ~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~~~~pD---i~t 264 (421)
T PRK09792 189 LFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGK-LFAMDHYADKPD---LMT 264 (421)
T ss_pred HHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHhcCCCCc---EEE
Confidence 6642 334454444488999866 899999999999999999999999999877664 334444433333 458
Q ss_pred CcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213 250 ISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV 298 (301)
Q Consensus 250 ~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~ 298 (301)
+||.++ +|+++||++++. ++++.+..... .....++++|.
T Consensus 265 ~gK~l~-~G~pigav~~~~--------~i~~~~~~~~~~~T~~gnpl~~a 305 (421)
T PRK09792 265 MAKSLA-GGMPLSGVVGNA--------NIMDAPAPGGLGGTYAGNPLAVA 305 (421)
T ss_pred eehhhc-CCCceEEEEEcH--------HHHhccCCCCcCCCCCCCHHHHH
Confidence 999965 899999998743 35555443221 12245555554
No 257
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.61 E-value=1e-13 Score=124.26 Aligned_cols=156 Identities=25% Similarity=0.257 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~ 160 (301)
....|.+.++++- ..++.+.++++..||..++.+++++||+|+++...|.+.. .+++..|+++.+++.
T Consensus 64 T~~~lE~~~a~LE--------g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~ 135 (396)
T COG0626 64 TRDALEEALAELE--------GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDP 135 (396)
T ss_pred cHHHHHHHHHHhh--------CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECC
Confidence 4567888888775 5678999999999999999999999999999999998754 344568888887753
Q ss_pred CCCCCCCCCHHHHHhhcc-cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 161 LPERNWEVDLDAVEALAD-KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
.+.+.+++++. +++++|++.+|.||+-.+.+ +.+|+++|+++|+++|+|+.|..-.+.. +..++
T Consensus 136 -------~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~--PL~~G--- 200 (396)
T COG0626 136 -------GDDEALEAAIKEPNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR--PLELG--- 200 (396)
T ss_pred -------CChHHHHHHhcccCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccC--hhhcC---
Confidence 34556666666 48999999999999999888 9999999999999999999999855532 22222
Q ss_pred CCCCEEEEecCcccCCCCcceeEEEEe
Q 022213 240 SIVPVITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
-+ |++.|.+|.++..+==+|-+++
T Consensus 201 aD---IVvhSaTKyl~GHsDvl~G~v~ 224 (396)
T COG0626 201 AD---IVVHSATKYLGGHSDVLGGVVL 224 (396)
T ss_pred CC---EEEEeccccccCCcceeeeEEe
Confidence 22 9999999998886544444444
No 258
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.60 E-value=7.1e-14 Score=126.78 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=141.1
Q ss_pred HHHHHH-HHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCC
Q 022213 62 VEAEDA-IVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPG 140 (301)
Q Consensus 62 ~~~~~~-~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~ 140 (301)
..+.++ +...+.+.+ .|..+....+|++++++++ ..+.++.|++++.|+.++....++|||.| +.++
T Consensus 50 ~aMs~~q~a~~~~GDe--~yag~~s~~~lE~~va~~~--------G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~ 117 (450)
T TIGR02618 50 NAMSDKQWAGLMMGDE--AYAGSRNFYHLERTVRELY--------GFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNM 117 (450)
T ss_pred HHHHHHHHHHhhhcch--hhcCCCcHHHHHHHHHHHH--------CCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCce
Confidence 345454 555554443 5888778899999999998 45689999999999998877778999987 6677
Q ss_pred Ccc-hHHHHHhcCceEEEeecC--------CCCCCCCCHHHHHhhccc----CccEEEEcCCCCC-cccCCCHHHHHHHH
Q 022213 141 WPY-YEGIAQRKQVEVRHFDLL--------PERNWEVDLDAVEALADK----NTAAMVIINPGNP-CGNVFTYHHLQEIA 206 (301)
Q Consensus 141 ~~~-~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~np-tG~~~~~~~l~~i~ 206 (301)
|.. +...+...|..++.++.+ ....+.+|++.+++.+++ +++.+++.+++|. .|..++.+++++|.
T Consensus 118 ~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~ 197 (450)
T TIGR02618 118 YFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVR 197 (450)
T ss_pred eHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHH
Confidence 754 444467788755544322 123467899999999975 2346778888885 48999999999999
Q ss_pred HHHHhCCCeEEEccCCcc-c-cc-----CCCCCCCc----cccCCCCCEEEEecCcccCCCC-cceeEEEEeeCCCCccc
Q 022213 207 EMARKLRVMVVADEVYGH-L-TF-----GSIPYTPM----GLFGSIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQ 274 (301)
Q Consensus 207 ~~~~~~~~~ii~D~~y~~-~-~~-----~~~~~~~~----~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~ 274 (301)
++|++||+.+|+|.+... . .| .+..-.++ .......+ ....|..|.++.| | |+++..+
T Consensus 198 elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD-~~~~S~~Kd~~~~~G---G~l~~~d------ 267 (450)
T TIGR02618 198 ELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYAD-GCTMSGKKDCLVNIG---GFLCMND------ 267 (450)
T ss_pred HHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCc-EEEEeeccCCCCCCc---eEEEeCC------
Confidence 999999999999999876 1 11 01111122 11111112 4777999997776 4 6666554
Q ss_pred chhHHHHHHhhh
Q 022213 275 KSGIIDSIKDCL 286 (301)
Q Consensus 275 ~~~~~~~~~~~~ 286 (301)
++++++++...
T Consensus 268 -~~l~~k~r~~~ 278 (450)
T TIGR02618 268 -DEMFQSAKELV 278 (450)
T ss_pred -HHHHHHHHHHh
Confidence 35778877763
No 259
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.59 E-value=5.1e-14 Score=129.94 Aligned_cols=245 Identities=16% Similarity=0.098 Sum_probs=144.3
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+||+..|--... .-..++.+.+++.+++.......+.. ...+.+.++++.+.+..+ ....+.++++++++
T Consensus 29 D~dG~~ylD~~~g~~~~~-lGh~~p~v~~a~~~ql~~~~~~~~~~--~~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGs 104 (420)
T TIGR00700 29 DVDGNRLIDFASGIAVLN-IGHSHPRVVDAVRTQVAEFTHTCFMV--TPYEGYVALAEKLNRIAP-GSGPKKSVFFNSGA 104 (420)
T ss_pred eCCCCEEEECccCHHhcc-CCCCCHHHHHHHHHHHHhccCccccc--cCChHHHHHHHHHHHhCC-CCCCCEEEEeCCcH
Confidence 446888999977732111 11245688899999887533222211 122344455655544221 11235899999999
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCC-CC--------CCCCHHH
Q 022213 118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPE-RN--------WEVDLDA 172 (301)
Q Consensus 118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~-~~--------~~~~~~~ 172 (301)
+|++.+++.... ...+|+...-+|++........ +. .+..++.... .. +.-+++.
T Consensus 105 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (420)
T TIGR00700 105 EAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAA 184 (420)
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHH
Confidence 999999987642 3357888888898764333221 10 1111221100 00 0002445
Q ss_pred HHhhcc----cCccEEEEcCC-CCCcccCCCH-HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEE
Q 022213 173 VEALAD----KNTAAMVIINP-GNPCGNVFTY-HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVIT 246 (301)
Q Consensus 173 l~~~~~----~~~~~v~l~~p-~nptG~~~~~-~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~ 246 (301)
+++.+. ....+.++.-| ..-+|.+++. +.+++|.++|++||+++|+||+|..+.+.+. ...+..++...++
T Consensus 185 ~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~~~~~~~pDi-- 261 (420)
T TIGR00700 185 ARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFACEHEGPEPDL-- 261 (420)
T ss_pred HHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHHhhcCCCCCE--
Confidence 665542 12334444555 5567876654 5599999999999999999999999876653 2233333323333
Q ss_pred EecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213 247 LGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC 299 (301)
Q Consensus 247 ~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~ 299 (301)
.++||.++ +|+|+||++++. ++++.+.... ....+.++++|.+
T Consensus 262 -~~lsK~l~-~G~pig~v~~~~--------~i~~~~~~~~~~~T~~~~pl~~aa 305 (420)
T TIGR00700 262 -ITTAKSLA-DGLPLSGVTGRA--------EIMDAPAPGGLGGTYAGNPLACAA 305 (420)
T ss_pred -EEeecccc-CCcceEEEEecH--------HHHhhcCCCCcCCCCCcCHHHHHH
Confidence 36999987 899999999853 4666664322 2233556666654
No 260
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.59 E-value=8.6e-14 Score=126.19 Aligned_cols=165 Identities=15% Similarity=0.135 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~ 160 (301)
...+|.+.++++. ..+..+++++++.|+.+++.+++++||+|+++.+.|.+.. ..+...|+++++++.
T Consensus 65 ~~~~lE~~la~le--------g~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~ 136 (384)
T PRK06434 65 TVQAFEEKYAVLE--------NAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDT 136 (384)
T ss_pred hHHHHHHHHHHHh--------CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECC
Confidence 3567888888886 3467899999999999999999999999999888776543 556778999999987
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
+..+.+.++ .+++++|++.+|+|||+.+.+ +++|+++|++++ +++|.++..-. ...++.. ..
T Consensus 137 ~~~~~~~l~--------~~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~~----~~~pl~~-ga 198 (384)
T PRK06434 137 DRLNSLDFD--------PSNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASPY----NQNPLDL-GA 198 (384)
T ss_pred CChhheeec--------CCCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCcc----cCCchhc-CC
Confidence 543332222 135789999999999999987 888888999998 45699975422 2223322 22
Q ss_pred CCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213 241 IVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
+ ++++|.+|.++.+| .=.|.++..+ +++.++++..
T Consensus 199 D---ivv~S~tK~i~G~~d~~gG~vv~~~-------~~~~~~~~~~ 234 (384)
T PRK06434 199 D---VVIHSATKYISGHSDVVMGVAGTNN-------KSIFNNLVER 234 (384)
T ss_pred C---EEEeecccccCCCCCceEEEEecCc-------HHHHHHHHHH
Confidence 2 88899999987766 3345554433 2355555543
No 261
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.58 E-value=5.6e-14 Score=121.71 Aligned_cols=158 Identities=23% Similarity=0.251 Sum_probs=129.6
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCceEEEeec
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQVEVRHFDL 160 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~ 160 (301)
....|.+.||.+- ..---+.+.+++.|+..++..++++||.|+...--|.+. ...++..|+++.+++.
T Consensus 63 T~~vlE~RiAaLE--------GG~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~ 134 (426)
T COG2873 63 TTDVLEERIAALE--------GGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP 134 (426)
T ss_pred hHHHHHHHHHHhh--------cchhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCC
Confidence 4567888888774 122356677889999999999999999999998888764 4456789999999864
Q ss_pred CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240 (301)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~ 240 (301)
.|++.+++++++++|+|++..-.||.+.+.+ +++|+++|+++++++|+|..+..-++ ..|+. ++.
T Consensus 135 -------~d~~~~~~aI~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl----~rP~~-hGA 199 (426)
T COG2873 135 -------DDPENFEAAIDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYL----CRPIE-HGA 199 (426)
T ss_pred -------CCHHHHHHHhCcccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCccee----cchhh-cCC
Confidence 4789999999999999999999999999999 99999999999999999999886322 12221 222
Q ss_pred CCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 241 IVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+ |++.|+||..|..|.-+|-+++-.
T Consensus 200 D---IVvHS~TK~igGhGt~iGG~iVD~ 224 (426)
T COG2873 200 D---IVVHSATKYIGGHGTAIGGVIVDG 224 (426)
T ss_pred C---EEEEeecccccCCccccceEEEeC
Confidence 2 999999999999999999988744
No 262
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.57 E-value=1.6e-13 Score=126.63 Aligned_cols=247 Identities=13% Similarity=0.054 Sum_probs=148.2
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.++|+..|.-... .-..++.+.++++++++......+.. ...+.+..+++.+....+ ....+.++++++
T Consensus 34 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~~~~~~~~~--~~~~~~~~la~~l~~~~p-~~~~~~~~f~~s 109 (421)
T PRK06777 34 LWDVEGREYIDFAAGIAVLN-TGHRHPKVVAAVRQQLDQFTHTAYQI--VPYASYVTLAERINALAP-IDGPAKTAFFTT 109 (421)
T ss_pred EEeCCCCEEEEcccCHHhhc-cCCCCHHHHHHHHHHHhhcccccccc--cCChHHHHHHHHHHHhCC-CCCCceEEEeCC
Confidence 33456888999977732111 11245678899999887532211211 123344556666544221 112468999999
Q ss_pred HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cce-------------EEEeecCCCC-C--CCCCHHHHHhh
Q 022213 116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QVE-------------VRHFDLLPER-N--WEVDLDAVEAL 176 (301)
Q Consensus 116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~~-------------~~~~~~~~~~-~--~~~~~~~l~~~ 176 (301)
+++|.+.+++.... ...+|+...-+|++........ +.. +..++..... + ...+++.+++.
T Consensus 110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~ 189 (421)
T PRK06777 110 GAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERL 189 (421)
T ss_pred cHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHH
Confidence 99999999987642 2357888888898764433321 210 0111111000 0 01135567766
Q ss_pred ccc----CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213 177 ADK----NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI 250 (301)
Q Consensus 177 ~~~----~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~ 250 (301)
+.. ...+.++..| .+..|. +.+.+.+++|.++|++||+++|.||+|..+.+.+. ......++...+++ ++
T Consensus 190 ~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~-~~~~~~~~~~pDiv---~~ 265 (421)
T PRK06777 190 FKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK-LFAMEYYDVKPDLI---TM 265 (421)
T ss_pred HHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc-hhhhhhcCCCCCEE---ee
Confidence 642 2234444455 667775 67899999999999999999999999998866653 32333343333444 79
Q ss_pred cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213 251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC 299 (301)
Q Consensus 251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~ 299 (301)
||.++ +|+|+||++++. ++++.+..... ...+.+++.|.+
T Consensus 266 sK~l~-~G~pigav~~~~--------~i~~~~~~~~~~~T~~~~p~~~aa 306 (421)
T PRK06777 266 AKSLG-GGMPISAVVGRA--------EVMDAPAPGGLGGTYAGNPLAVAA 306 (421)
T ss_pred ehhhc-CCCceEEEEEcH--------HHHhccCCCCCCCCCCcCHHHHHH
Confidence 99987 899999999843 46666543322 233456666544
No 263
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.55 E-value=9.6e-14 Score=120.45 Aligned_cols=204 Identities=15% Similarity=0.181 Sum_probs=140.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCC
Q 022213 60 TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139 (301)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p 139 (301)
+.+++.+++..+-. .....|+..+-...+.+.+++.+ ..+.+++++++|++..+++.+.++||+.|++..-
T Consensus 12 ~~~~m~eam~~a~~-~~~~~YG~D~~~~~~e~~~ae~~--------g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~ 82 (342)
T COG2008 12 PTPEMREALAAANA-VGDDVYGEDPTTNALEQRIAELF--------GKEAALFVPSGTQANQLALAAHCQPGESVICHET 82 (342)
T ss_pred CCHHHHHHHHhccc-cCCCCCCCCHHHHHHHHHHHHHh--------CCceEEEecCccHHHHHHHHHhcCCCCeEEEecc
Confidence 44688888876542 23336777655556666666665 3388999999999999999999999999999988
Q ss_pred CCcchHH--HHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 022213 140 GWPYYEG--IAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARK 211 (301)
Q Consensus 140 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~ 211 (301)
.|..... ..+..+ ....++..+..+..+++++++..+.. .+..+++.+.+|-.|.+++.+++++|.++|++
T Consensus 83 aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~ 161 (342)
T COG2008 83 AHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKE 161 (342)
T ss_pred ccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHH
Confidence 8864321 222222 11223344545667999999997652 34556666666688999999999999999999
Q ss_pred CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213 212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 212 ~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
+|+.+..|.+-.....-... ++...+....+ .+..++||..+.| +|.|++.+. +++++++..
T Consensus 162 ~~l~LHmDGAR~~nA~valg-~~~~~~~~~~D-~v~~~~tK~g~~~---~gAiv~gn~-------~~~~~a~~~ 223 (342)
T COG2008 162 HGLPLHMDGARLANALVALG-VALKTIKSYVD-SVSFCLTKGGGAP---VGAIVFGNR-------DFAKRARRW 223 (342)
T ss_pred hCCceeechHHHHHHHHHcC-CCHHHHHhhCC-EEEEecccCCcce---eeeEEEcCH-------HHHHHHHHH
Confidence 99999999986543221111 23333333333 4555999996666 499888664 466666554
No 264
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.55 E-value=3.8e-14 Score=128.01 Aligned_cols=174 Identities=17% Similarity=0.201 Sum_probs=122.1
Q ss_pred CCCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeec
Q 022213 82 TNSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDL 160 (301)
Q Consensus 82 ~~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~ 160 (301)
.+.| +.+..+..|+.+.. ....++++|+|.++.+++.+++++||+|+++..+|-+....+...|+.+++++.
T Consensus 63 ~p~G~I~eAe~~aA~~fGA-------d~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p 135 (417)
T PF01276_consen 63 DPEGIIKEAEELAARAFGA-------DKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPP 135 (417)
T ss_dssp TTBTHHHHHHHHHHHHHTE-------SEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEE
T ss_pred CCccHHHHHHHHHHHhcCC-------CeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecC
Confidence 3344 46788888888732 346788999999999999999999999999999999999999999999999987
Q ss_pred CCCCCC----CCCH-----HHHHhhcccC--ccE---EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc
Q 022213 161 LPERNW----EVDL-----DAVEALADKN--TAA---MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT 226 (301)
Q Consensus 161 ~~~~~~----~~~~-----~~l~~~~~~~--~~~---v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~ 226 (301)
. .+.+ .++. +.+++.+++. .++ +++++|+. .|++.+ +++|+++|+++++.|++||+|+...
T Consensus 136 ~-~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~ 210 (417)
T PF01276_consen 136 E-DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAHGAHF 210 (417)
T ss_dssp E-E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-TTG
T ss_pred C-ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccccccc
Confidence 5 3322 2455 8888888653 344 88888875 799999 9999999999999999999999653
Q ss_pred cCCCCCCCccccC----CCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 227 FGSIPYTPMGLFG----SIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 227 ~~~~~~~~~~~~~----~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
.-...+.+..... .+..++++.|++|. ++++.-+.++--+.
T Consensus 211 ~F~~lp~~a~~~gad~~~~~~~~vvqS~HKt--L~altQts~lh~~~ 255 (417)
T PF01276_consen 211 GFHPLPRSALALGADRPNDPGIIVVQSTHKT--LPALTQTSMLHVKG 255 (417)
T ss_dssp GCSGGGTTCSSTTSS-CTSBEEEEEEEHHHH--SSS-TT-EEEEEET
T ss_pred cCCCCccchhhccCccccccceeeeechhhc--ccccccceEEEecC
Confidence 2222121111111 12347999999999 46666665544443
No 265
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.53 E-value=7.7e-13 Score=121.69 Aligned_cols=199 Identities=16% Similarity=0.110 Sum_probs=139.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-CCEEE--cCCHHHHHHHHHHHhcC--------
Q 022213 61 AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-DDVYV--TLGCKQAVEVILSVLAR-------- 129 (301)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~--t~g~~~al~~~~~~l~~-------- 129 (301)
.+.+.+.+...+.... .++.......++.+.+.+++.+.+|.+- + +++.. |+|+||++..++.+...
T Consensus 54 ~p~~~~~~~~~l~~~~-~np~s~~~~~~le~~~~~~la~llg~~~-~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~ 131 (431)
T TIGR01788 54 EPEARKLMDETINKNM-IDKDEYPQTAEIENRCVNMLADLWHAPA-KDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEA 131 (431)
T ss_pred CHHHHHHHHHHHhcCC-CCcccCccHHHHHHHHHHHHHHHhCCCC-CCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457788877775322 1222222334666666666666555321 2 45544 89999999988866531
Q ss_pred CC-----CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHH
Q 022213 130 PG-----ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQE 204 (301)
Q Consensus 130 ~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~ 204 (301)
.| -.|+++.-.|.++...++..|+++..+++++ +++.+|++.|++.+++++.+|+++..+|.||.+.+ +++
T Consensus 132 ~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idp---i~~ 207 (431)
T TIGR01788 132 AGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYED---VKA 207 (431)
T ss_pred cCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCC---HHH
Confidence 12 3688999999999999988999999998865 34568999999999888999999999999999999 888
Q ss_pred HHHHHHhC------CCeEEEccCCccccc---CCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 205 IAEMARKL------RVMVVADEVYGHLTF---GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 205 i~~~~~~~------~~~ii~D~~y~~~~~---~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
|+++|+++ ++++.+|.+|+.+.. .++....+.. ...+ -+..|.+|. +..-..+|.+++.+.
T Consensus 208 I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~--~~~D-Sis~s~HK~-~~~P~g~G~l~~r~~ 277 (431)
T TIGR01788 208 LNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRL--PRVK-SINVSGHKY-GLVYPGVGWVIWRDE 277 (431)
T ss_pred HHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCC--CCce-EEEECchhc-cCCCCCcEEEEEeCh
Confidence 88889999 999999999995431 1211111211 1111 456699998 434455888887653
No 266
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.52 E-value=2.3e-14 Score=124.99 Aligned_cols=192 Identities=15% Similarity=0.158 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCC
Q 022213 61 AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPG 140 (301)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~ 140 (301)
.+.+.+++.+...... .|+......+|++.+++++ ..+..++++++|.+..++++++++|++.|++..++
T Consensus 8 ~~~m~~a~~~a~~gd~--~Yg~D~~~~~l~~~i~~l~--------g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~a 77 (290)
T PF01212_consen 8 TPAMLEAMAAANVGDD--AYGEDPTTARLEERIAELF--------GKEAALFVPSGTMANQLALRAHLRPGESVICADTA 77 (290)
T ss_dssp -HHEEHHHHHTTSB-C--CTTSSHHHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTE
T ss_pred CHHHHHHHHccccCCc--ccCCChhHHHHHHHHHHHc--------CCCEEEEeCCCChHHHHHHHHHHhcCCceeccccc
Confidence 3677788855544333 5888777889999999998 44677899999999999999999999999999998
Q ss_pred Ccch---HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCC-cccCCCHHHHHHHHHHHH
Q 022213 141 WPYY---EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNP-CGNVFTYHHLQEIAEMAR 210 (301)
Q Consensus 141 ~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~np-tG~~~~~~~l~~i~~~~~ 210 (301)
|... .......|.++..++... +..++++++++.+.. +++.|++.+|+|. -|.+++.+++++|.++|+
T Consensus 78 Hi~~~E~ga~~~~~G~~~~~l~~~~--~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~ 155 (290)
T PF01212_consen 78 HIHFDETGAIEELSGAKLIPLPSDD--DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAR 155 (290)
T ss_dssp HHHHSSTTHHHHHTTCEEEEEBECT--GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHH
T ss_pred eeeeeccchhhHhcCcEEEECCCcc--cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHH
Confidence 7632 334456899988887532 145999999998854 4678999999986 489999999999999999
Q ss_pred hCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 211 ~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
+||+.++.|.+-....-.. .-.++..+....+ ++..|++|..++++ |-+++-++
T Consensus 156 ~~gl~lhmDGARl~~a~~~-~~~~~~e~~~~~D-~v~~~~tK~~g~~~---Gavl~~~~ 209 (290)
T PF01212_consen 156 EHGLPLHMDGARLANAAAA-LGVSLAEIAAGAD-SVSFGGTKNGGAPG---GAVLAGNK 209 (290)
T ss_dssp HHT-EEEEEETTHHHHHCH-HHHHHHHHHTTSS-EEEEETTSTT-SSS---EEEEEESH
T ss_pred hCceEEEEehhhHHHhhhc-ccccHHHHhhhCC-EEEEEEEccccccc---ceEEEech
Confidence 9999999999954321100 0001111112222 55559999988876 77666553
No 267
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=99.51 E-value=1.7e-13 Score=107.99 Aligned_cols=98 Identities=24% Similarity=0.447 Sum_probs=78.9
Q ss_pred CCCCeeeccCCCCCC-------------CCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCC--CC
Q 022213 40 DPRPVVPLGYGDPTA-------------FPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLP--YK 104 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~-------------~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~ 104 (301)
++.++|+|+.++..+ .|++.+|+.+.+++.+. ..|.+..|..+||+++|+|+.+.++ +.
T Consensus 41 np~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~~------a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~ 114 (153)
T PLN02994 41 NPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDI------ALFQDYHGLANFRKAIANFMAEARGGRVK 114 (153)
T ss_pred CCCceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHHH------hcCCCCCCcHHHHHHHHHHHHHHhCCCCc
Confidence 466788888875421 13455555545555442 2488889999999999999999877 66
Q ss_pred CCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcc
Q 022213 105 LSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPY 143 (301)
Q Consensus 105 ~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~ 143 (301)
+++++|++|+|++++++.++++++++||.|++++|+|++
T Consensus 115 ~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 115 FDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred cchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 889999999999999999999999999999999999974
No 268
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.50 E-value=1.6e-12 Score=118.34 Aligned_cols=183 Identities=20% Similarity=0.201 Sum_probs=130.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCc-chHHHHHhcCceEEE
Q 022213 79 CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP-YYEGIAQRKQVEVRH 157 (301)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~-~~~~~~~~~g~~~~~ 157 (301)
.|+.......|++.+++++ ..+.++.+++++.|+.++....+++||.| +..+|. .....+...|.. +
T Consensus 73 ~Yagd~s~~~LE~~vAe~l--------G~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~--f 140 (460)
T PRK13237 73 AYAGSRNFYHLEETVQEYY--------GFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNGGI--F 140 (460)
T ss_pred hhcCCCcHHHHHHHHHHHH--------CCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCCcE--E
Confidence 5887778899999999998 44679999999999998876678899975 444444 333435667774 4
Q ss_pred eecC----------CCCCCCCCHHHHHhhcccC----ccEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEccCC
Q 022213 158 FDLL----------PERNWEVDLDAVEALADKN----TAAMVIINPGNPC-GNVFTYHHLQEIAEMARKLRVMVVADEVY 222 (301)
Q Consensus 158 ~~~~----------~~~~~~~~~~~l~~~~~~~----~~~v~l~~p~npt-G~~~~~~~l~~i~~~~~~~~~~ii~D~~y 222 (301)
+++. ....+.+|++.+++.++++ +..+.+.+++|.. |...|.+++++|.++|++||+.+|+|.+.
T Consensus 141 vDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAr 220 (460)
T PRK13237 141 VDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATR 220 (460)
T ss_pred EeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcc
Confidence 4442 1235679999999998753 3346777888887 79999999999999999999999999998
Q ss_pred ccc----c------cCCCCCC----CccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 223 GHL----T------FGSIPYT----PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 223 ~~~----~------~~~~~~~----~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
..- + |.+.... .+.++.. +.+.|++|.++.+- -|+++..+ +++.++++...
T Consensus 221 a~gna~fI~~re~~y~~~~i~ei~~e~~s~aD----~~t~S~~K~~~~~~--GG~i~t~D-------~eL~~~~r~~~ 285 (460)
T PRK13237 221 CVENAYFIKEREEGYQDKSIKEIVHEMFSYAD----GCTMSGKKDCLVNI--GGFLAMND-------EELFDEAKELV 285 (460)
T ss_pred hhcChhhhcccccccCCCcHhHHhhhccCcCc----EEEEeCCCCCCCCC--ceEEEECC-------HHHHHHHHHhc
Confidence 742 1 2111110 1112222 66678999977652 38887754 36888888763
No 269
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.50 E-value=1.1e-12 Score=130.00 Aligned_cols=177 Identities=14% Similarity=0.149 Sum_probs=133.3
Q ss_pred CCCCCC---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH----HHHHHHHHHhcCC-CC----EEEEcCCCCcch
Q 022213 77 FNCYAT---NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK----QAVEVILSVLARP-GA----NVLLPRPGWPYY 144 (301)
Q Consensus 77 ~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~----~al~~~~~~l~~~-gd----~Vl~~~p~~~~~ 144 (301)
++-|.| .+|..++...+.+++.+..| .+.|+++++++ +++.++++++.++ || .|+++...|...
T Consensus 554 ~hp~~p~~~~~g~~~~~~~~r~~la~i~g----~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn 629 (993)
T PLN02414 554 IHPFAPVDQAQGYQEMFEDLGDLLCEITG----FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTN 629 (993)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHhC----CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccC
Confidence 445555 33544444444444433323 38999999999 8999999999865 88 899999999988
Q ss_pred HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccC
Q 022213 145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEV 221 (301)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~ 221 (301)
...+...|++++.++.+. +..+|+++|++.+++ ++++|++++|+|-+|...+ +++|+++|+++|+++++|.+
T Consensus 630 ~a~a~~~G~~vv~v~~d~--~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgA 704 (993)
T PLN02414 630 PASAAMCGMKIVVVGTDA--KGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGA 704 (993)
T ss_pred HHHHHHCCCEEEEeccCC--CCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEec
Confidence 777888999999999853 335999999999984 6788999999999999988 99999999999999999999
Q ss_pred CcccccCCCCCCCccccCCCCCEEEEecCcccCCC----CcceeEEEEeeC
Q 022213 222 YGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV----PGWRFGWLVTND 268 (301)
Q Consensus 222 y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~----~G~rvG~~~~~~ 268 (301)
+..-... ......++-+ ++.+|.+|+|+. .|-.+|++.+..
T Consensus 705 q~~a~~~---l~~p~~~GaD---~~~~s~HK~f~~P~G~GGPg~G~l~~~~ 749 (993)
T PLN02414 705 NMNAQVG---LTSPGFIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKK 749 (993)
T ss_pred CHHhccC---cCCccccCCC---EEEecCCccCCcCcccCCCCeeeEEEch
Confidence 9652221 1122233333 888899997763 356689987743
No 270
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.50 E-value=3.4e-12 Score=117.64 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=133.9
Q ss_pred cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHH-hcCCC-CCCCC----CCCCHHHHH----
Q 022213 22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAV-RSGKF-NCYAT----NSGIPPARR---- 91 (301)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~-~~~~~-~~Y~~----~~g~~~lr~---- 91 (301)
...|..+++..... ....++|-..+. ..++.+++++...+ +.... ..+.. ...+.+|.+
T Consensus 13 ~~~~~~~~~~~~~~-----~~~~~~l~~sen------~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~ 81 (416)
T PRK13034 13 DDEVFAAINKELER-----QQDHLELIASEN------FTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIE 81 (416)
T ss_pred CHHHHHHHHHHHHH-----HhcCeeeccccc------CCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHH
Confidence 34566666543321 356778766652 13678888888775 32110 01111 123456666
Q ss_pred HHHHHHhhhCCCCCCCCCEE-EcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch-HHHHHh--cCceE--EEeecCCCCC
Q 022213 92 AIADYLSRDLPYKLSADDVY-VTLGCKQAVEVILSVLARPGANVLLPRPGWPYY-EGIAQR--KQVEV--RHFDLLPERN 165 (301)
Q Consensus 92 ~ia~~l~~~~~~~~~~~~i~-~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~-~~~~~~--~g~~~--~~~~~~~~~~ 165 (301)
.+++++ ..+..+ .+++++.|+..++.+++++||+|+++...|.+. ...++. .+... ..++++. .+
T Consensus 82 ~la~l~--------g~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~ 152 (416)
T PRK13034 82 RAKQLF--------GCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDR-LT 152 (416)
T ss_pred HHHHHh--------CCCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEccccc-cc
Confidence 777776 234564 468889999999999999999999999988762 211111 11111 2343322 24
Q ss_pred CCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC-CCCCCccccCCCCC
Q 022213 166 WEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS-IPYTPMGLFGSIVP 243 (301)
Q Consensus 166 ~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~~~~~ 243 (301)
+.+|++++++.++. ++++|++.++. +|...+ +.+|.++|+++|+++|+|++++...+.. ..+.++ . .-
T Consensus 153 ~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~---~--~~ 222 (416)
T PRK13034 153 GLIDYDEVEELAKEHKPKLIIAGFSA--YPRELD---FARFREIADEVGALLMVDMAHIAGLVAAGEHPNPF---P--HA 222 (416)
T ss_pred CCcCHHHHHHHHhhcCCeEEEECCCc--cccccC---HHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCC---C--Cc
Confidence 55899999988754 56777665654 466667 7788888999999999999988655432 111111 1 12
Q ss_pred EEEEecCcccCCCCcceeEEEEeeC
Q 022213 244 VITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 244 vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
-++++|++|+++.+. -|++++++
T Consensus 223 Di~~~s~~K~l~g~~--GG~v~~~~ 245 (416)
T PRK13034 223 HVVTTTTHKTLRGPR--GGMILTND 245 (416)
T ss_pred eEEEEeCcccCCCCC--CeEEEECc
Confidence 388999999974443 37777643
No 271
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.50 E-value=2.8e-12 Score=119.13 Aligned_cols=244 Identities=16% Similarity=0.075 Sum_probs=144.4
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+||+..|--... --...+.+.+++.+++.... .+....+..+.+.++++.+.+..+. ...+.++++++++
T Consensus 52 D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~--~~~~~~~~~~~~~~la~~l~~~~p~-~~~~~v~f~~sGs 127 (443)
T PRK06058 52 DVDGNRLIDLGSGIAVTS-VGNSAPRVVEAVREQVARFT--HTCFMVTPYEGYVAVAEQLNRLTPG-DHEKRSALFNSGA 127 (443)
T ss_pred eCCCCEEEEcCcchhhhc-cCCCCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCCC-CCCCEEEEeCCcH
Confidence 445788889877731110 12345788899999887422 2222223356677777777654321 1125789999999
Q ss_pred HHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCC-CC---CCC--------C
Q 022213 118 QAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPE-RN---WEV--------D 169 (301)
Q Consensus 118 ~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~-~~---~~~--------~ 169 (301)
+|++.+++... ...++|+....+|+++....... +. .+..++.... +. ... .
T Consensus 128 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (443)
T PRK06058 128 EAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARA 207 (443)
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHH
Confidence 99999998543 23478999999999875443321 10 1111221100 00 000 1
Q ss_pred HHHHHhhcccCccEEEEcCCCCCcc-cC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEE
Q 022213 170 LDAVEALADKNTAAMVIINPGNPCG-NV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITL 247 (301)
Q Consensus 170 ~~~l~~~~~~~~~~v~l~~p~nptG-~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~ 247 (301)
.+.+++.+..+..+.++..|.+..| .. .+.+.+++|.++|++||+++|.||++..+...+..+ ....++-..+++
T Consensus 208 ~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~f-a~~~~gv~PDiv-- 284 (443)
T PRK06058 208 ITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWF-ACEHEGIVPDLI-- 284 (443)
T ss_pred HHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhh-HHHhcCCCCCEE--
Confidence 2233343333344556677766554 43 458899999999999999999999999876555332 222233333455
Q ss_pred ecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213 248 GSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV 298 (301)
Q Consensus 248 ~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~ 298 (301)
+++|.++ .|+++|+++++. ++++.+..... ...+.+++++.
T Consensus 285 -~~gK~l~-~G~Pi~av~~~~--------~i~~~~~~~~~~~T~~gnpl~~a 326 (443)
T PRK06058 285 -TTAKGIA-GGLPLSAVTGRA--------EIMDAPHPGGLGGTYGGNPVACA 326 (443)
T ss_pred -EEccccc-CCCccEEEEEcH--------HHHhhccCCCCCCCCCCCHHHHH
Confidence 4589977 799999999843 46555543321 12234555443
No 272
>PRK02769 histidine decarboxylase; Provisional
Probab=99.49 E-value=6.4e-12 Score=114.02 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC
Q 022213 87 PPARRAIADYLSRDLPYKLSADDV--YVTLGCKQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP 162 (301)
Q Consensus 87 ~~lr~~ia~~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 162 (301)
.++.+++.+++.+.++ .+++++ ++|+|+||++..++.... .++++|++++-.|.+....++.+|++...++.++
T Consensus 64 ~~~e~~~~~~~a~l~g--~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~ 141 (380)
T PRK02769 64 FDFERDVMNFFAELFK--IPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLP 141 (380)
T ss_pred HHHHHHHHHHHHHHhC--CCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccCC
Confidence 4555555555554444 344444 889999999877765543 4788999999999999889899999888888754
Q ss_pred CCCCCCCHHHHHhhcccC---ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC---CeEEEccCCcccccCCC-CCCCc
Q 022213 163 ERNWEVDLDAVEALADKN---TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR---VMVVADEVYGHLTFGSI-PYTPM 235 (301)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~---~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~---~~ii~D~~y~~~~~~~~-~~~~~ 235 (301)
+..+|+++|++.++++ +.+|+++.++|+||.+.+ +++|+++|+++| +++++|.+++.+...-. ...++
T Consensus 142 --~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~ 216 (380)
T PRK02769 142 --NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPF 216 (380)
T ss_pred --CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCccccC
Confidence 4469999999998765 788889999999999999 888888999998 69999999997543210 11112
Q ss_pred cccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 236 GLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 236 ~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
. +.. .--.+..|.+|.+++| ..+|.++..+
T Consensus 217 d-~~~-~vDsis~s~HK~~~~P-~g~G~l~~r~ 246 (380)
T PRK02769 217 S-FAD-GIDSIAISGHKFIGSP-MPCGIVLAKK 246 (380)
T ss_pred C-ccC-CCCEEEECCcccCCCC-CCcEEEEEeh
Confidence 1 111 1125667999985533 4588888754
No 273
>PLN03032 serine decarboxylase; Provisional
Probab=99.49 E-value=1.9e-12 Score=116.84 Aligned_cols=171 Identities=19% Similarity=0.115 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCC
Q 022213 87 PPARRAIADYLSRDLPYKLSADDV--YVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP 162 (301)
Q Consensus 87 ~~lr~~ia~~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 162 (301)
.++.+.+.+++.+.++ .+++++ ++|+|+|+++..++.+..+ ++..|+++.-.|.+....++.+|.++..++++.
T Consensus 65 ~~~e~~v~~~ia~llg--~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~ 142 (374)
T PLN03032 65 RQFEVGVLDWFARLWE--LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPTLP 142 (374)
T ss_pred HHHHHHHHHHHHHHhC--CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeeeCC
Confidence 4555555555555444 456676 9999999999988876642 456899999999999999999999988888754
Q ss_pred CCCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-----CeEEEccCCcccccC--CCCC
Q 022213 163 ERNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR-----VMVVADEVYGHLTFG--SIPY 232 (301)
Q Consensus 163 ~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~-----~~ii~D~~y~~~~~~--~~~~ 232 (301)
+..+|+++|++.+.+ ++.+++++..+|+||.+-+ +++|+++|+++| +++.+|.+|+..... .. .
T Consensus 143 --~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~-~ 216 (374)
T PLN03032 143 --SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSR-A 216 (374)
T ss_pred --CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCC-C
Confidence 346999999999876 4567777889999999999 888888888986 589999999874321 11 0
Q ss_pred CCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 233 TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 233 ~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+.+ .+....+ -+..|.+|.+++ -..+|.++..+
T Consensus 217 ~~~-~~~~~vD-Sis~s~HK~~g~-P~g~G~ll~r~ 249 (374)
T PLN03032 217 PEV-TFRKPIG-SVSVSGHKFLGC-PMPCGVALTRK 249 (374)
T ss_pred ccc-CCCcCCc-EEEECcccccCC-CcCeEEEEEEc
Confidence 111 1111112 455699998543 35588888754
No 274
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.49 E-value=2.8e-12 Score=106.70 Aligned_cols=205 Identities=16% Similarity=0.157 Sum_probs=151.2
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC--------CCCCHHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT--------NSGIPPARRAIADYLSRDLPYKLSADDVYV 112 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~--------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~ 112 (301)
..+.||++-=+- . -..+++.++++.+--+.-....|.. ..-+..+.+.+++|+ ..|.+-+
T Consensus 14 ~r~~iNv~PiQr---G-GiLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFl--------g~D~~R~ 81 (382)
T COG1103 14 TRGFINVNPIQR---G-GILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFL--------GMDEVRV 81 (382)
T ss_pred hcCccccChhhc---c-CcCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHh--------CCceeee
Confidence 356677643221 1 2345667777665433211222221 113567888899998 5678899
Q ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-------CccEEE
Q 022213 113 TLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-------NTAAMV 185 (301)
Q Consensus 113 t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~ 185 (301)
|+|+.++-+.++++++++||.|++....|......+++.|+++..+|......+.++++...+.+.+ .+.+.+
T Consensus 82 t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lal 161 (382)
T COG1103 82 TAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALAL 161 (382)
T ss_pred cccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEE
Confidence 9999999999999999999999999999988788889999999999976666778888887776642 245667
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEE
Q 022213 186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265 (301)
Q Consensus 186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~ 265 (301)
+++|...-|...+ .++++++|+++++.++...+|.. +.-+.+......+ ++++|-+|++ ++.-.+|.+.
T Consensus 162 lTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~----Grmpvs~ke~g~D---FiVgSGHKsm-AAs~PiGvl~ 230 (382)
T COG1103 162 LTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTV----GRMPVSGKEIGAD---FIVGSGHKSM-AASAPIGVLA 230 (382)
T ss_pred EeccCCCcCCchh---hHHHHHHHHHcCCceEeecceee----ccccccccccCCC---EEEecCccch-hccCCeeEEe
Confidence 8888777777766 89999999999999999999987 3333444444444 8999999995 5566799988
Q ss_pred eeC
Q 022213 266 TND 268 (301)
Q Consensus 266 ~~~ 268 (301)
.+.
T Consensus 231 ~~e 233 (382)
T COG1103 231 MSE 233 (382)
T ss_pred ehh
Confidence 754
No 275
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.49 E-value=3.1e-12 Score=117.98 Aligned_cols=244 Identities=15% Similarity=0.083 Sum_probs=144.1
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|--... --..++.+.+++++++..... +.......+.+..+++.+.+..+ .-..+.++++++
T Consensus 34 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~l~~--~~~~~~~~~~~~~la~~l~~~~p-~~~~~~v~f~~S 109 (425)
T PRK07495 34 IWDKEGRRYIDFAAGIAVVN-TGHRHPRVIAAVKAQLDRFTH--TCHQVVPYENYVRLAERLNALVP-GDFAKKTIFVTT 109 (425)
T ss_pred EEeCCCCEEEEccccHHhhc-cCCCCHHHHHHHHHHHhhccC--cccCccCCHHHHHHHHHHHHhCC-CCCCCEEEECCc
Confidence 34556889999987732111 123456788999998874221 11111223445556666655322 101258999999
Q ss_pred HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCCCCCC----HHHHHh
Q 022213 116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERNWEVD----LDAVEA 175 (301)
Q Consensus 116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~~~----~~~l~~ 175 (301)
+++|.+.+++.... ...+|+...-+|++........ +. .+..++..... .+.+ ++.+++
T Consensus 110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~ 188 (425)
T PRK07495 110 GAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDK 188 (425)
T ss_pred hHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHH
Confidence 99999999986642 3467888888888764322211 10 12233322111 1122 344566
Q ss_pred hcc----cCccEEEEcCC--CCCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEe
Q 022213 176 LAD----KNTAAMVIINP--GNPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLG 248 (301)
Q Consensus 176 ~~~----~~~~~v~l~~p--~nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 248 (301)
.+. ....+.++..| +| +| ..++.+.+++|.++|++||+++|+||+|..+...+. ......++ .+.-+.
T Consensus 189 ~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~a~~~~g---v~pDi~ 263 (425)
T PRK07495 189 LFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK-LFAMEHHE---VAADLT 263 (425)
T ss_pred HHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC-ceeecccC---CCCCEE
Confidence 543 12234445555 44 77 457999999999999999999999999998765553 22222222 223456
Q ss_pred cCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213 249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV 298 (301)
Q Consensus 249 s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~ 298 (301)
++||.++ +|+++|+++++. ++++.+..... ...+.+++++.
T Consensus 264 tlsK~l~-~G~pigav~~~~--------~i~~~~~~~~~~~T~~~~pl~~a 305 (425)
T PRK07495 264 TMAKGLA-GGFPLAAVTGRA--------EIMDAPGPGGLGGTYGGNPLGIA 305 (425)
T ss_pred eehhhhc-CCccceEEEEcH--------HHHhccCCCCcCCCCCCCHHHHH
Confidence 8999975 899999999853 35555543221 22244555544
No 276
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.46 E-value=9.6e-12 Score=113.82 Aligned_cols=216 Identities=12% Similarity=0.079 Sum_probs=140.6
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+++|..|.-..+-... .+.+.+++.+++..-. +.......++...+++++.+. ...+.++++++++
T Consensus 32 d~dG~~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~---~~~~~~~~~~~~~la~~l~~~----~~~~~v~f~~SGs 103 (395)
T PRK03715 32 DHNGKRYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLI---NPSPAFYNEPMAKLAGLLTQH----SCFDKVFFANSGA 103 (395)
T ss_pred ECCCCEEEECCcChhhccCCCC-CHHHHHHHHHHHHhcc---cccccccCHHHHHHHHHHhhc----cCCCEEEEeCCcH
Confidence 3468899999876322111222 5788899988886422 111223467888899998652 1246899999999
Q ss_pred HHHHHHHHHhcC------CC-CEEEEcCCCCcchHHHH-HhcCceEE---EeecCCCCCC----CCCHHHHHhhcccCcc
Q 022213 118 QAVEVILSVLAR------PG-ANVLLPRPGWPYYEGIA-QRKQVEVR---HFDLLPERNW----EVDLDAVEALADKNTA 182 (301)
Q Consensus 118 ~al~~~~~~l~~------~g-d~Vl~~~p~~~~~~~~~-~~~g~~~~---~~~~~~~~~~----~~~~~~l~~~~~~~~~ 182 (301)
+|.+.+++.... +| .+|+..+.+|++..... ...+.... +.+.. .++ ..|++.+++.+.+++.
T Consensus 104 eA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~a 181 (395)
T PRK03715 104 EANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQV--PGFPKAELNDIASVEKLITDKTV 181 (395)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCC--CCceeeCCchHHHHHHHcCCCce
Confidence 999999998852 23 67888888888753322 22222111 11111 111 1478889988876666
Q ss_pred EEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213 183 AMVIINPGNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF 261 (301)
Q Consensus 183 ~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv 261 (301)
++++...++..|... +.+.+++|.++|++||+++|+||++..+...+..+ ....++-..++ .+++|.++ .|+.+
T Consensus 182 avi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~-a~~~~gv~PDi---~t~gK~lg-~G~p~ 256 (395)
T PRK03715 182 AVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLF-AYELSGIEPDI---MTLGKGIG-GGVPL 256 (395)
T ss_pred EEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchh-hHhhcCCCCce---eeehhhhh-CCcce
Confidence 666655566667664 68999999999999999999999999864444322 11222222333 37799976 47889
Q ss_pred EEEEeeC
Q 022213 262 GWLVTND 268 (301)
Q Consensus 262 G~~~~~~ 268 (301)
|.++++.
T Consensus 257 ~av~~~~ 263 (395)
T PRK03715 257 AALLAKA 263 (395)
T ss_pred EEEEEcc
Confidence 9998754
No 277
>PRK15029 arginine decarboxylase; Provisional
Probab=99.45 E-value=3.5e-12 Score=123.29 Aligned_cols=169 Identities=12% Similarity=0.078 Sum_probs=126.7
Q ss_pred CCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC
Q 022213 83 NSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL 161 (301)
Q Consensus 83 ~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 161 (301)
+.| +.+..+..|+.+. .....++++|+|.++.+++.+++++||+|+++..+|-+....+...|+.++++...
T Consensus 203 p~G~I~eAq~~aA~~fg-------A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~ 275 (755)
T PRK15029 203 HTGAFGESEKYAARVFG-------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPS 275 (755)
T ss_pred CCcHHHHHHHHHHHHhC-------CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEeccc
Confidence 344 4567777777762 23578899999999999999999999999999999999999999999999999643
Q ss_pred CCCCC----CCC-----HHHHHhhcccC----------ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCC
Q 022213 162 PERNW----EVD-----LDAVEALADKN----------TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY 222 (301)
Q Consensus 162 ~~~~~----~~~-----~~~l~~~~~~~----------~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y 222 (301)
. +.+ .++ ++.+++.+.+. ++++++++|+. .|++.+ +++|+++|+++++.+++||+|
T Consensus 276 ~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAh 350 (755)
T PRK15029 276 R-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFDEAW 350 (755)
T ss_pred c-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEEEECcc
Confidence 2 222 233 78888877432 23788888875 799999 899999999999999999999
Q ss_pred cccc-cCCCCCCCcccc-----C-CCCCEEEEecCcccCCCCcceeEEEEe
Q 022213 223 GHLT-FGSIPYTPMGLF-----G-SIVPVITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 223 ~~~~-~~~~~~~~~~~~-----~-~~~~vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
+... |.+ .++....+ . ....++++.|++|. +|++.-|.++-
T Consensus 351 Gah~~F~~-~~p~~sa~~~~~~~~~Gad~~vvqStHKt--L~alTQaS~LH 398 (755)
T PRK15029 351 YGYARFNP-IYADHYAMRGEPGDHNGPTVFATHSTHKL--LNALSQASYIH 398 (755)
T ss_pred ccccccCc-cccccccccccccccCCCceEEEEchhhc--ccchhhhhhhe
Confidence 8643 432 23221222 1 22346999999998 56666666543
No 278
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.44 E-value=1.2e-11 Score=114.83 Aligned_cols=220 Identities=15% Similarity=0.072 Sum_probs=131.5
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+||+..|--... --..++.+.+++.++++........ ....+....+++.+.+..+ -..+.++++++++
T Consensus 39 d~dG~~ylD~~~g~~~~~-lGh~~p~v~~a~~~q~~~~~~~~~~--~~~~~~~~~la~~L~~~~~--~~~~~v~f~~SGs 113 (433)
T PRK08117 39 GVDGKEYLDFTSGIAVAN-VGHRHPKVVQAIKEQADKLMHGPSG--VIYYESILKLAEELAEITP--GGLDCFFFSNSGA 113 (433)
T ss_pred eCCCCEEEECCcchhhcc-CCCCCHHHHHHHHHHHHhccCcccc--ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHH
Confidence 446888999988732111 1134578889999988742211111 1123445555555554321 1235899999999
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCC--CCC--------CCHH
Q 022213 118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPER--NWE--------VDLD 171 (301)
Q Consensus 118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~--~~~--------~~~~ 171 (301)
+|.+.+++.... ...+|+...-+|++........ +. .+..+|..... .+. .+++
T Consensus 114 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (433)
T PRK08117 114 EAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLR 193 (433)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHH
Confidence 999999986432 2367888888888753322111 10 01222221100 000 1445
Q ss_pred HHHhhccc----CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213 172 AVEALADK----NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI 245 (301)
Q Consensus 172 ~l~~~~~~----~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi 245 (301)
.+++.++. ...+.++.-| ....|.+ .+.+.+++|.++|++||+++|+||+|..+...+..+. ...++-..+
T Consensus 194 ~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~-~~~~gv~pD-- 270 (433)
T PRK08117 194 DLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFA-AQTFGVVPD-- 270 (433)
T ss_pred HHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchh-HhhcCCCCC--
Confidence 56665431 2334455555 5555665 5788999999999999999999999998766554221 122222222
Q ss_pred EEecCcccCCCCcceeEEEEee
Q 022213 246 TLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 246 ~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+.++||.++ +|+++|+++++
T Consensus 271 -i~t~sK~lg-~G~pigav~~~ 290 (433)
T PRK08117 271 -IMTIAKGIA-SGLPLSAVVAS 290 (433)
T ss_pred -Eeehhhhcc-CCCcceeEEEc
Confidence 359999987 89999999874
No 279
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.43 E-value=8.9e-12 Score=115.24 Aligned_cols=231 Identities=19% Similarity=0.150 Sum_probs=140.9
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...++..++||..|.-... --..++.+.++++++++......+. ....+.+..+++.+.+..+ ...+.++++++
T Consensus 36 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~~~~~~--~~~~~~~~~la~~l~~~~p--~~~~~v~f~~s 110 (423)
T PRK05964 36 LYLADGRELIDAISSWWVAT-HGHNHPYIDQAIREQLDRLDHVIFA--GFTHEPAERLAQRLVALTP--GGLDHVFFSDS 110 (423)
T ss_pred EEeCCCCEEEEcchhHHhcc-CCCCCHHHHHHHHHHHhhCCCcccc--ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence 33456889999987732211 1224578889999988743211110 1123555667777755332 12368999999
Q ss_pred HHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCCCCCCCCHHHHH
Q 022213 116 CKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPERNWEVDLDAVE 174 (301)
Q Consensus 116 ~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~l~ 174 (301)
+++|++.+++.... +| .+|+...-+|++.........- ....++....+....+++.++
T Consensus 111 GseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~ 190 (423)
T PRK05964 111 GSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALE 190 (423)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHH
Confidence 99999999987632 23 5799888889875433322111 112222211110011267777
Q ss_pred hhccc--CccEEEEcCC--CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEec
Q 022213 175 ALADK--NTAAMVIINP--GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGS 249 (301)
Q Consensus 175 ~~~~~--~~~~v~l~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s 249 (301)
+.+++ +..+.++..| +...|... +.+.+++|.++|++||+++|+||++..+...+..+ ....++-..+++ +
T Consensus 191 ~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~-a~~~~~v~pDi~---~ 266 (423)
T PRK05964 191 ALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLF-ACEQAGVSPDIM---C 266 (423)
T ss_pred HHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh-HHHhcCCCCCee---e
Confidence 77743 2233444555 56677765 88999999999999999999999998775544221 222222223333 7
Q ss_pred CcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213 250 ISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 250 ~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
++|.++.+++++|+++++. ++.+.+.
T Consensus 267 ~~K~l~gG~~p~~av~~~~--------~i~~~~~ 292 (423)
T PRK05964 267 LSKGLTGGYLPLAATLCTA--------EIFEAFY 292 (423)
T ss_pred eehhhhcCcccceEEEEcH--------HHHHhhh
Confidence 7999876668999988732 4666664
No 280
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.42 E-value=2e-11 Score=112.81 Aligned_cols=225 Identities=15% Similarity=0.115 Sum_probs=133.8
Q ss_pred ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEE-cC
Q 022213 37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYV-TL 114 (301)
Q Consensus 37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~-t~ 114 (301)
...+++.+||+..|--... --..++.+.+++++++...... .. .....+.+..+++.+.+........+ .+++ ++
T Consensus 34 ~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~~~~~-~~-~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~ 110 (425)
T PRK09264 34 YDEDGKEYIDFFAGAGALN-YGHNNPVLKQALIDYLQRDGIT-HG-LDMHTTAKREFLETFEETILKPRGLDYKVQFTGP 110 (425)
T ss_pred EeCCCCEeeecccchhhcc-CCCCCHHHHHHHHHHHHhcccc-cc-cccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCC
Confidence 3456888999988732211 1234578889999988742110 11 11123455556666544211111122 5656 58
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCCC-CCCHHHHHhhcc
Q 022213 115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERNW-EVDLDAVEALAD 178 (301)
Q Consensus 115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~~-~~~~~~l~~~~~ 178 (301)
++++|++.+++.... ...+|+...-+|++........ +. .+..+|....... .-|++.+++.+.
T Consensus 111 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~ 190 (425)
T PRK09264 111 TGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLE 190 (425)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHH
Confidence 999999999987753 2367888888888764322221 10 1233332110000 025677777774
Q ss_pred c-----CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213 179 K-----NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS 251 (301)
Q Consensus 179 ~-----~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S 251 (301)
+ ...+.++.-| ....|. ..+.+.+++|.++|++||+++|+||++..+...+..+ ....++-..+++ ++|
T Consensus 191 ~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-~~~~~~v~PDi~---t~~ 266 (425)
T PRK09264 191 DSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFF-SFERAGITPDIV---TLS 266 (425)
T ss_pred hccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHH-HHhhcCCCCCEE---Eec
Confidence 2 1234445555 455665 5688999999999999999999999998765444221 222222233444 679
Q ss_pred ccCCCCcceeEEEEeeC
Q 022213 252 KRWLVPGWRFGWLVTND 268 (301)
Q Consensus 252 K~~~~~G~rvG~~~~~~ 268 (301)
|.++..|+++|++++++
T Consensus 267 K~l~~~G~pigav~~~~ 283 (425)
T PRK09264 267 KSISGYGLPMALVLIKP 283 (425)
T ss_pred cccCCCccceEEEEEch
Confidence 99876699999999864
No 281
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.42 E-value=4.2e-11 Score=110.70 Aligned_cols=201 Identities=17% Similarity=0.136 Sum_probs=148.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCC--------C
Q 022213 60 TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARP--------G 131 (301)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~--------g 131 (301)
+++...+.+...+..+-. ......+..++.+.+.+++.+-++.. ..-.=.+|+|+|+++..++.+..+. +
T Consensus 74 ~~~~a~~~~~~~~~~nl~-d~~~~p~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~ 151 (460)
T COG0076 74 VPPVAAELLVSALNKNLG-DPDESPAAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAES 151 (460)
T ss_pred CHHHHHHHHHHHHhhcCC-CcccChhHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345666777666654321 11222256889999999998876644 3335689999999999888776421 1
Q ss_pred C------EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE--EEEcCCCCCcccCCCHHHHH
Q 022213 132 A------NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA--MVIINPGNPCGNVFTYHHLQ 203 (301)
Q Consensus 132 d------~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--v~l~~p~nptG~~~~~~~l~ 203 (301)
. +|+++.-.|.++...+...|++...+++.+. ...+|++++++.+++.+.. |+.+.++.+||.+=+ ++
T Consensus 152 ~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDd---i~ 227 (460)
T COG0076 152 GKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDD---IE 227 (460)
T ss_pred cccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecCCCCCccCC---HH
Confidence 1 6999999999999999999999999998775 6779999999999887665 777888999999877 99
Q ss_pred HHHHHHHhCCCeEEEccCCccccc--CCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 204 EIAEMARKLRVMVVADEVYGHLTF--GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 204 ~i~~~~~~~~~~ii~D~~y~~~~~--~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
+|.++|+++++++.+|.+|+.+.. ..+...-...+ +....| ..+++|. +..=..+||++..++
T Consensus 228 ~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l-~~vdSI-t~d~HK~-g~aP~~~G~il~rd~ 292 (460)
T COG0076 228 ELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGL-EGVDSI-TVDGHKY-GLAPIGCGVVLFRDE 292 (460)
T ss_pred HHHHHHHHcCCcEEEEccccceeecccCccchhhcCC-CCceEE-EECcccc-cCCCCCceEEEEECH
Confidence 999999999999999999998764 22111100111 111224 3499998 777788999999775
No 282
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.42 E-value=2.4e-11 Score=113.23 Aligned_cols=216 Identities=10% Similarity=0.030 Sum_probs=135.2
Q ss_pred cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC---CCC---CHH----HHH
Q 022213 22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT---NSG---IPP----ARR 91 (301)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g---~~~----lr~ 91 (301)
...+.+++..... . ....|+|-..+. .+++.+++++...+.+.-...|+. ..| ... .|+
T Consensus 19 d~~~~~~~~~~~~-~----~~~~l~l~~sen------~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~ 87 (452)
T PTZ00094 19 DPELYELIEKEKE-R----QIEGLELIASEN------FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQK 87 (452)
T ss_pred CHHHHHHHHHHHH-H----HHcCeeEecccc------cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHH
Confidence 3455555543222 1 367799977763 345678888877765311001111 112 122 344
Q ss_pred HHHHHHhhhCCCCCCCCCEEEc---CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHh--------cC--ceEEEe
Q 022213 92 AIADYLSRDLPYKLSADDVYVT---LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQR--------KQ--VEVRHF 158 (301)
Q Consensus 92 ~ia~~l~~~~~~~~~~~~i~~t---~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~--------~g--~~~~~~ 158 (301)
.+++++ +.+++++.++ +|++++...++.+++++||+|++....|.+....... .+ .++..+
T Consensus 88 ~~a~lf------~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~ 161 (452)
T PTZ00094 88 RALEAF------GLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPY 161 (452)
T ss_pred HHHHHh------CCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeec
Confidence 566666 3466677666 7899999999999999999999987777654322211 11 223334
Q ss_pred ecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCC-CCCcc
Q 022213 159 DLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP-YTPMG 236 (301)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~-~~~~~ 236 (301)
+++. +..+|++++++.+++ +++.+++. ++.+|...+ +++|.++|+++|+++++|++++.-...... ..++.
T Consensus 162 ~~~~--~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~ 234 (452)
T PTZ00094 162 QVNE--KGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP 234 (452)
T ss_pred ccCC--CCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC
Confidence 4433 356999999999854 56665543 345999999 778888899999999999999875443211 11211
Q ss_pred ccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 237 LFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 237 ~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
.--+++.|++|+++.|. .|+++++.
T Consensus 235 -----~~D~l~~S~hK~l~GP~--Gg~l~~~~ 259 (452)
T PTZ00094 235 -----YADVVTTTTHKSLRGPR--SGLIFYRK 259 (452)
T ss_pred -----CCcEEEcCCccCCCCCC--ceEEEEec
Confidence 11288999999865444 48877743
No 283
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.41 E-value=2.9e-12 Score=115.80 Aligned_cols=184 Identities=13% Similarity=0.029 Sum_probs=122.0
Q ss_pred CCChHHHHHHHHHHHhcC-C--CCCCCCC-------CCCHHHHHHHHHHHhhhCCCCC-CCCCEEEcCC-HHHHHHHHHH
Q 022213 58 FRTAVEAEDAIVDAVRSG-K--FNCYATN-------SGIPPARRAIADYLSRDLPYKL-SADDVYVTLG-CKQAVEVILS 125 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~-~--~~~Y~~~-------~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~t~g-~~~al~~~~~ 125 (301)
-..|+.|.+++.+.+... . ...|... +-+.+.|+.+++++ +. ++++|++|+| +|++++.++.
T Consensus 8 ~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~------~~~~~~~vvf~~gs~T~a~~~~~~ 81 (355)
T cd00611 8 AALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELL------NIPDNYKVLFLQGGATGQFAAVPL 81 (355)
T ss_pred CCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh------CCCCCceEEEEcCCchHHHHHHHH
Confidence 456789999998887421 0 1112221 11456778888887 33 4568999988 9999999999
Q ss_pred HhcC---CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCC-HHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213 126 VLAR---PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVD-LDAVEALADKNTAAMVIINPGNPCGNVFTYHH 201 (301)
Q Consensus 126 ~l~~---~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~ 201 (301)
++.. +||.|++ .+....+...++..|+++..++.+...++ .+ .+..+..++++++.|.+++..|.||..++
T Consensus 82 ~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~--- 156 (355)
T cd00611 82 NLLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKY-TKIPDVETWDLAPDAAYVHYCSNETIHGVEFD--- 156 (355)
T ss_pred hcCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCC-CCCCCHhhcCCCCCCCEEEEeCCcccccEEcc---
Confidence 9987 4555544 22222334467888999998887432222 13 23333445668899999999999999843
Q ss_pred HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
++++.||+++++|.+.+. +..+..+..++ +.+.|..|.+|-+| +|.++++.
T Consensus 157 -----~i~~~~g~~~~VDa~qs~----g~~~idv~~~~-----~~~ss~~K~lGP~G--~g~l~~~~ 207 (355)
T cd00611 157 -----EVPDTGGVPLVADMSSNI----LSRPIDVSKFG-----VIYAGAQKNLGPAG--VTVVIVRK 207 (355)
T ss_pred -----eecccCCCeEEEEccccc----cCCCCCHHHhC-----EEEeecccccCCCc--eEEEEECH
Confidence 334469999999999987 33334444332 46677899987666 77777754
No 284
>PRK06541 hypothetical protein; Provisional
Probab=99.41 E-value=3e-11 Score=112.53 Aligned_cols=223 Identities=18% Similarity=0.165 Sum_probs=135.8
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|.-.. +--..++.+.+++.++++.... +.......+.+..+|+.+.+..+ ...+.++++++
T Consensus 46 l~D~dG~~ylD~~~g~~~~-~lGh~~p~v~~Av~~q~~~~~~--~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~s 120 (460)
T PRK06541 46 IWDDRGKRYLDGLAGLFVV-QVGHGRAELAEAAAKQAGTLAF--FPLWSYAHPPAIELAERLAALAP--GDLNRVFFTTG 120 (460)
T ss_pred EEeCCCCEEEECCccHHhc-cCCCCCHHHHHHHHHHHhhCcC--ccccccCCHHHHHHHHHHHHhCC--CCcCEEEEcCC
Confidence 3345688999998872111 1123457888999999874321 11111223455556666654222 12368999999
Q ss_pred HHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCC---CCCCC--
Q 022213 116 CKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPER---NWEVD-- 169 (301)
Q Consensus 116 ~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~---~~~~~-- 169 (301)
+++|.+.+++.... + ..+|+...-+|++........ +. .+..++..... .+..+
T Consensus 121 GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 200 (460)
T PRK06541 121 GSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPE 200 (460)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHH
Confidence 99999999986542 1 367888888888764332221 11 11222211100 01112
Q ss_pred ------HHHHHhhcc---cCccEEEEcCC-CCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213 170 ------LDAVEALAD---KNTAAMVIINP-GNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238 (301)
Q Consensus 170 ------~~~l~~~~~---~~~~~v~l~~p-~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 238 (301)
++.+++.+. .+..+.++..| +++.|.+.+ .+.+++|.++|++||+++|.||++..+...+..+ ....+
T Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~-a~~~~ 279 (460)
T PRK06541 201 AFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMF-GCERF 279 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhh-hhhhc
Confidence 256666664 23456666777 888898765 8899999999999999999999997764333222 12223
Q ss_pred CCCCCEEEEecCcccCCCCcc-eeEEEEeeC
Q 022213 239 GSIVPVITLGSISKRWLVPGW-RFGWLVTND 268 (301)
Q Consensus 239 ~~~~~vi~~~s~SK~~~~~G~-rvG~~~~~~ 268 (301)
+-..+++ ++||.++ .|+ ++|++++++
T Consensus 280 gv~PDiv---t~gK~l~-~G~~pigav~~~~ 306 (460)
T PRK06541 280 GYVPDII---TCAKGIT-SGYSPLGAMIASD 306 (460)
T ss_pred CCCCCEE---Eeccccc-CCccceeEEEEcH
Confidence 3233444 5899976 676 999999854
No 285
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.41 E-value=8.2e-12 Score=110.69 Aligned_cols=220 Identities=16% Similarity=0.130 Sum_probs=146.3
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
++..+++.+|||..|--.. .--..+|.+.++++++.+.-.. -+. ....+.+.++++.|.+..+ ..+.|+++|+
T Consensus 36 v~D~~G~~YlDf~~Giav~-~lGH~hP~iv~al~~Q~~kl~h--~sn-~~~~~~~~~la~~L~~~s~---~~d~vff~NS 108 (404)
T COG4992 36 VWDQQGREYLDFAAGIAVN-NLGHCHPALVEALKEQAEKLWH--VSN-LFYNEPQAELAEKLVELSP---FADRVFFCNS 108 (404)
T ss_pred EECCCCCEeeeeccceeee-ccCCCCHHHHHHHHHHHHHhhh--ccc-ccCChHHHHHHHHHHhhCc---cccEEEEcCC
Confidence 4455689999998883321 1234678899999988764211 111 1234566667777655211 3789999999
Q ss_pred HHHHHHHHHHHhcCCC-----CEEEEcCCCCcchHHHHHhcCceEE----EeecCCCCCC--CCCHHHHHhhcccCccEE
Q 022213 116 CKQAVEVILSVLARPG-----ANVLLPRPGWPYYEGIAQRKQVEVR----HFDLLPERNW--EVDLDAVEALADKNTAAM 184 (301)
Q Consensus 116 ~~~al~~~~~~l~~~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~----~~~~~~~~~~--~~~~~~l~~~~~~~~~~v 184 (301)
++||++.++....+-+ -+|+...-+|++-.......+-+.. +-|+.+.-.+ --|++.++.++++++.+|
T Consensus 109 GaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAv 188 (404)
T COG4992 109 GAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAV 188 (404)
T ss_pred cHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhccCeEEE
Confidence 9999999998875422 3788777777753222222221111 1122111000 148899999999988888
Q ss_pred EEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213 185 VIINPGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW 263 (301)
Q Consensus 185 ~l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~ 263 (301)
++.-.+--.|+... .+.++++-++|++||+++|.||++..+..+++- .....++-.++++ ++.|.+| .|+.+|.
T Consensus 189 ivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~-fA~e~~gV~PDI~---tlaK~Lg-GG~PigA 263 (404)
T COG4992 189 IVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKL-FAYEHYGVEPDIL---TLAKALG-GGFPIGA 263 (404)
T ss_pred EEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchH-HHHHHhCCCCCEE---Eeecccc-CCcccee
Confidence 87766777887654 468899999999999999999999998777642 2333344444566 7799954 6799999
Q ss_pred EEee
Q 022213 264 LVTN 267 (301)
Q Consensus 264 ~~~~ 267 (301)
+++.
T Consensus 264 ~la~ 267 (404)
T COG4992 264 MLAT 267 (404)
T ss_pred eEEc
Confidence 9984
No 286
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.40 E-value=3.7e-11 Score=110.61 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=134.5
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCC-CCCCEEE-c
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKL-SADDVYV-T 113 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~-t 113 (301)
+...+++.+||+..|.-... --..++.+.+++++++..... ........+.+..+++.+.+...... ..+.+++ +
T Consensus 29 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~~~~--~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~ 105 (412)
T TIGR02407 29 LWDEDGKEYIDFFAGAGALN-YGHNNPKLKQALIDYLADDGI--IHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPG 105 (412)
T ss_pred EEeCCCCEEEEcccchhhcc-CCCCCHHHHHHHHHHHhhccc--eeccccCcHHHHHHHHHHHHhccCccCCCceEEEeC
Confidence 33456889999987732211 123457888999998863211 11111224555666666654211010 1125655 5
Q ss_pred CCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC-CCCCHHHHHhhc
Q 022213 114 LGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN-WEVDLDAVEALA 177 (301)
Q Consensus 114 ~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~-~~~~~~~l~~~~ 177 (301)
+++++|.+.+++.... ...+|+...-+|++........ +. .+..+|...... ..-+++.+++.+
T Consensus 106 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~ 185 (412)
T TIGR02407 106 PTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLL 185 (412)
T ss_pred CCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHH
Confidence 8999999999987753 3367998888998764333221 11 112222210000 002356677766
Q ss_pred cc------CccEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213 178 DK------NTAAMVIINPGNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI 250 (301)
Q Consensus 178 ~~------~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~ 250 (301)
.+ +..++++.-..++.|. ..+.+.+++|.++|++||+++|+||++..+...+..+ ....++-..+++ ++
T Consensus 186 ~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-a~~~~~v~PDi~---~~ 261 (412)
T TIGR02407 186 EDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFF-SFEPAGIEPDIV---CL 261 (412)
T ss_pred HhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhH-HhcccCCCCCEE---Ee
Confidence 42 2344554444778888 6789999999999999999999999998764443221 111222223334 67
Q ss_pred cccCCCCcceeEEEEeeC
Q 022213 251 SKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 251 SK~~~~~G~rvG~~~~~~ 268 (301)
||.++..|+++|++++++
T Consensus 262 ~K~lg~~G~pigav~~~~ 279 (412)
T TIGR02407 262 SKSISGYGLPLALTLIKP 279 (412)
T ss_pred chhccCCccceeEEEEch
Confidence 899654399999999854
No 287
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.39 E-value=5.9e-11 Score=110.23 Aligned_cols=225 Identities=17% Similarity=0.103 Sum_probs=133.7
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCC-EEEcC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADD-VYVTL 114 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-i~~t~ 114 (301)
+...+++.+||+..|.-... --..++.+.+++.+++........ .....+.+.++|+.+....+....... +++++
T Consensus 33 l~D~dG~~ylD~~~g~~~~~-lGh~~p~i~~ai~~q~~~~~~~~~--~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~ 109 (442)
T TIGR00709 33 VTDVEGKEYLDFLAGAGTLA-LGHNHPNMKQKILDYLQSGLPLHT--LDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGP 109 (442)
T ss_pred EEeCCCCEEEEccccHhhhc-CCCCCHHHHHHHHHHHHhccCccc--cccCcHHHHHHHHHHHHhCCCcCCCccEEEeCC
Confidence 33456888999987732211 123457888999998874321111 011235666677777653321111134 45578
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC--CC----CCH---
Q 022213 115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN--WE----VDL--- 170 (301)
Q Consensus 115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~----~~~--- 170 (301)
++++|.+.+++.... ...+|+...-+|++........ +. .+..++...... +. .+.
T Consensus 110 sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (442)
T TIGR00709 110 SGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNAS 189 (442)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHH
Confidence 999999999987653 2367888888998765443322 10 122222211000 00 011
Q ss_pred -HHHHhhcc------cCccEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213 171 -DAVEALAD------KNTAAMVIINP-GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV 242 (301)
Q Consensus 171 -~~l~~~~~------~~~~~v~l~~p-~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~ 242 (301)
+.+++.+. .+..++++... +|+.....+.+.+++|.++|++||+++|.||++..+.+.+. +.....++-..
T Consensus 190 ~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~gv~P 268 (442)
T TIGR00709 190 IEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAGIEP 268 (442)
T ss_pred HHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHHcCCCC
Confidence 12333332 23444555433 44444568999999999999999999999999999876653 33333344334
Q ss_pred CEEEEecCcccCCCCcceeEEEEeeC
Q 022213 243 PVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 243 ~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
++++ +||.++. |+++|+++++.
T Consensus 269 Div~---~gK~l~~-G~Pigav~~~~ 290 (442)
T TIGR00709 269 DFVV---MSKAVGG-GLPLAVLLIAP 290 (442)
T ss_pred cEEE---EcccccC-CcccEEEEEch
Confidence 4553 7999876 89999999843
No 288
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.39 E-value=3.8e-11 Score=119.03 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=134.5
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHhc---CCCCCCCC----CCCCHHHHHHHHHHHhhhCCCCCCCC--CEEEc
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS---GKFNCYAT----NSGIPPARRAIADYLSRDLPYKLSAD--DVYVT 113 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~---~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~--~i~~t 113 (301)
.++.|+.+.-. +..+..+.+++...+.. +....|.. ..-+.+.|+.+++|+ +++++ .|++|
T Consensus 34 ~~iYLD~Aatt----~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~l------ga~~~~~~VvFt 103 (805)
T PLN02724 34 GVVYLDHAGAT----LYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYF------NAPPSDYACVFT 103 (805)
T ss_pred CCEeEeCCCCC----CCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHh------CCCccceEEEEe
Confidence 36888887532 23345566655554432 11111211 112567888888888 44444 58999
Q ss_pred CCHHHHHHHHHHHh-cCCCCEEEEcCCCCcchH---HHHHhcCceEEEeecCCCC------CCCCCH--HHHHhhc----
Q 022213 114 LGCKQAVEVILSVL-ARPGANVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPER------NWEVDL--DAVEALA---- 177 (301)
Q Consensus 114 ~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~------~~~~~~--~~l~~~~---- 177 (301)
+|+|+++++++.++ .++||+|++..-.|.+.. ..++..|+++..++++... ...++. +.+++.+
T Consensus 104 snaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l 183 (805)
T PLN02724 104 SGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKL 183 (805)
T ss_pred CChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhh
Confidence 99999999999998 578999999877777543 3345568999988875211 111222 5566543
Q ss_pred ------ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-----CCeEEEccCCcccccCCCCCCCccccCCCCCEEE
Q 022213 178 ------DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL-----RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVIT 246 (301)
Q Consensus 178 ------~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-----~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~ 246 (301)
..+++++.+++.+|-||.+++.+.++++.+.++++ ++++++|.+++. +..+..+..++.+ ++
T Consensus 184 ~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~----g~~piDv~~~~~D---fl 256 (805)
T PLN02724 184 QKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGC----GTSPPDLSRYPAD---FV 256 (805)
T ss_pred ccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhc----CCCCCChhhcCCC---EE
Confidence 13457899999999999999966544444433222 368999999876 3344455555444 88
Q ss_pred EecCcccCCCCcceeEEEEeeC
Q 022213 247 LGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 247 ~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+.|+.|.+|.| ..+|.+++..
T Consensus 257 ~~S~HK~~GgP-~G~G~L~vr~ 277 (805)
T PLN02724 257 VVSFYKIFGYP-TGLGALLVRR 277 (805)
T ss_pred EEecceeccCC-CCceEEEEeh
Confidence 99999998744 2378887754
No 289
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.39 E-value=3e-12 Score=107.63 Aligned_cols=206 Identities=16% Similarity=0.161 Sum_probs=143.2
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC-----------CCCCHHHHHHHHHHHhhhCCCCCCCCC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT-----------NSGIPPARRAIADYLSRDLPYKLSADD 109 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~-----------~~g~~~lr~~ia~~l~~~~~~~~~~~~ 109 (301)
.+++++|..++. -.+...|++.++-++++.. |+. ..-+..|...||+|. ..|+
T Consensus 66 ~k~ilnFcaNnY---LGLsshPeii~a~~~alee-----yGaGlssvrfIcGtq~iHk~LE~kiAqfh--------~rED 129 (417)
T KOG1359|consen 66 DKKILNFCANNY---LGLSSHPEIINAGQKALEE-----YGAGLSSVRFICGTQDIHKLLESKIAQFH--------GRED 129 (417)
T ss_pred ccceeeeccccc---ccccCChHHHHHHHHHHHH-----hCCCccceeEEecchHHHHHHHHHHHHHh--------CCCc
Confidence 567899988874 3566778888888888873 322 112456677777776 4578
Q ss_pred EEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHh----hcccCccEEE
Q 022213 110 VYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEA----LADKNTAAMV 185 (301)
Q Consensus 110 i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~v~ 185 (301)
.++.+++..|...++.++..|.|-|+..+..+.+....++... +. ..+|.-.++. +.+.+-++|+
T Consensus 130 ~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLck-ry----------~h~dv~~l~~~l~~a~k~r~klv~ 198 (417)
T KOG1359|consen 130 TILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLCK-RY----------RHVDVFDLEHCLISACKMRLKLVV 198 (417)
T ss_pred eEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHHh-hh----------ccchhHHHHHHHHHhhhheEEEEE
Confidence 8899999999999999999999999988888876654444332 11 1134444443 3333455555
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC-EEEEecCcccCC-CCcceeEE
Q 022213 186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWL-VPGWRFGW 263 (301)
Q Consensus 186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~-vi~~~s~SK~~~-~~G~rvG~ 263 (301)
....-...|.+.+ +++|.+++++||+++++||+++...++...--.-..+.-.++ .|..++++|.+| +.| ||
T Consensus 199 TDg~FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G---Gy 272 (417)
T KOG1359|consen 199 TDGVFSMDGDIAP---LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG---GY 272 (417)
T ss_pred ecceeccCCCccc---HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC---CC
Confidence 5566788999999 888889999999999999999988876432222222221222 378889999976 455 99
Q ss_pred EEeeCCCCcccchhHHHHHHhhhc
Q 022213 264 LVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
..+|.+ +++.+++...
T Consensus 273 ttgp~~--------li~llrqr~R 288 (417)
T KOG1359|consen 273 TTGPKP--------LISLLRQRSR 288 (417)
T ss_pred ccCChh--------HHHHHHhcCC
Confidence 998764 8888877654
No 290
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.38 E-value=2.5e-11 Score=109.60 Aligned_cols=215 Identities=14% Similarity=0.090 Sum_probs=136.3
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.++|+..|--... .-..++.+.+++.+++++.. .+.+ ....+.+.++++.+.+.. ..+.++++++++
T Consensus 20 D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~~~--~~~~-~~~~~~~~~la~~l~~~~----~~~~v~~~~SGs 91 (364)
T PRK04013 20 DSQGRRYLDLIAGIGVNV-LGHNHPEWVEEMSEQLEKLV--VAGP-MFEHEEKEEMLEELSKWV----NYEYVYMGNSGT 91 (364)
T ss_pred ECCCCEEEEcccChhhcc-CCCCCHHHHHHHHHHHHhcC--CccC-CcCCHHHHHHHHHHHhhc----CCCEEEEeCchH
Confidence 456889999977732111 11244678899999887532 1111 112344444555554321 246899999999
Q ss_pred HHHHHHHHHhcC-CC-CEEEEcCCCCcchHHHHHhc--------CceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEc
Q 022213 118 QAVEVILSVLAR-PG-ANVLLPRPGWPYYEGIAQRK--------QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII 187 (301)
Q Consensus 118 ~al~~~~~~l~~-~g-d~Vl~~~p~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~ 187 (301)
+|++.+++.... +| ++|+...-+|++........ +..+...++.. -.+ .|.+.+++.+++++.++++.
T Consensus 92 eA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~-~~~-~d~~~l~~~i~~~~aAvivE 169 (364)
T PRK04013 92 EAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKH-IPF-NDVEAAKEAITKETAAVIFE 169 (364)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEE-ecC-CCHHHHHHHhcCCcEEEEEc
Confidence 999999997753 45 89999999998764333221 11110000000 001 36788888887777777666
Q ss_pred CCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213 188 NPGNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 188 ~p~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
......|. ..+.+.++++.++|++||+++|+||++..+ ..+. ......++-..+++ +++|.++. |+.+|.++.
T Consensus 170 pi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~-~~a~~~~gv~PDiv---~~gK~lgg-G~P~~a~~~ 243 (364)
T PRK04013 170 PIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYKVEPDIV---TMGKGIGN-GVPVSLTLT 243 (364)
T ss_pred CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCc-hhHHHhcCCCCCEE---EecccccC-CceeEEEEe
Confidence 55554555 456788999999999999999999999987 4443 22333344344555 56999764 799999987
Q ss_pred eC
Q 022213 267 ND 268 (301)
Q Consensus 267 ~~ 268 (301)
+.
T Consensus 244 ~~ 245 (364)
T PRK04013 244 NF 245 (364)
T ss_pred cc
Confidence 43
No 291
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=99.37 E-value=3.9e-12 Score=107.18 Aligned_cols=202 Identities=17% Similarity=0.234 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCC
Q 022213 61 AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRP 139 (301)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p 139 (301)
..+++++|.++..+.. -|+.......|.+.+|+.+ ..|--++.+++|.+..++++.-| ++|..|++-+-
T Consensus 35 TdeMr~am~eA~vgDd--VyGeD~tt~rLE~~vA~l~--------GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~ 104 (384)
T KOG1368|consen 35 TDEMRRAMAEASVGDD--VYGEDPTTNRLEQRVAELF--------GKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDR 104 (384)
T ss_pred hHHHHHHHhhcccCcc--cccCCccHHHHHHHHHHHh--------CccceeeecccccccHHHHHHHhcCCCceEEeccc
Confidence 4678888888776555 4665556789999999998 34555666666777778888777 49999999988
Q ss_pred CCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc--------CccEEEEcCCCCCcc-cCCCHHHHHHHHH
Q 022213 140 GWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK--------NTAAMVIINPGNPCG-NVFTYHHLQEIAE 207 (301)
Q Consensus 140 ~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~v~l~~p~nptG-~~~~~~~l~~i~~ 207 (301)
+|...+ .+....|+.+..+. ++++..+++++++.++.. .++++++.|-+|-+| .++|.+++.++.+
T Consensus 105 ~HI~~~E~gg~s~l~gv~~~tv~--~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~ 182 (384)
T KOG1368|consen 105 AHIHRYEQGGISQLAGVHVRTVK--NENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKA 182 (384)
T ss_pred hheeehhccChhhhccceeEeee--eCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHH
Confidence 876322 23445566666654 445556999999998862 368899988876665 9999999999999
Q ss_pred HHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 208 MARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 208 ~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
+|++||+.+..|.+-.+..-- ..-.++..+....+.+.+ ++||.+|+| ||.+++.+. +++.+.+.++
T Consensus 183 lak~~glkLH~DGARi~NAav-asgV~vk~i~~~fDSVsi-CLSKglgAP---VGSViVG~k-------~FI~kA~~~R 249 (384)
T KOG1368|consen 183 LAKRHGLKLHMDGARIFNAAV-ASGVPVKKICSAFDSVSI-CLSKGLGAP---VGSVIVGSK-------DFIDKARHFR 249 (384)
T ss_pred HHhccCCeeecchhhhhhHHH-HcCCCHHHHHHhhhhhhh-hhhccCCCC---cccEEEccH-------HHHHHHHHHH
Confidence 999999999999987653211 111233333222222322 899998877 899988664 3777666553
No 292
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.37 E-value=9e-12 Score=113.54 Aligned_cols=187 Identities=13% Similarity=0.071 Sum_probs=122.6
Q ss_pred eeeccCCCCCCCCCCCChHH-HHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHHHHHhhhCCCCC-CCCCEEEcC-CHHH
Q 022213 44 VVPLGYGDPTAFPCFRTAVE-AEDAIVDAVRSGKFNCYAT--NSGIPPARRAIADYLSRDLPYKL-SADDVYVTL-GCKQ 118 (301)
Q Consensus 44 ~i~l~~g~p~~~p~~~~~~~-~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~t~-g~~~ 118 (301)
.+.|+.|- -.+++. +.+++.+.+-... ...+ ..-+.+.|+.+++++ +. ++++|++++ ++|+
T Consensus 13 ~~~f~~Gp------~~~~~~~v~~a~~~~~~~~~--hr~~~f~~~~~~~r~~l~~l~------~~~~~~~v~~~~gs~T~ 78 (378)
T PRK03080 13 DPRFSSGP------CKKRPGWQLEALADALLGRS--HRQKPVKALLKRVIEGTRELL------SLPEGYEVGIVPGSDTG 78 (378)
T ss_pred CCCcCCCC------cCCChHHHHHHHHhhhcccC--cCCHHHHHHHHHHHHHHHHHh------CCCCCceEEEECCchHH
Confidence 45676662 233445 8888875543211 1111 112456667777776 33 345788775 8999
Q ss_pred HHHHHHHHhcCC-CCEEEEcCCCCcc-hHH-HHHhcCc-eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcc
Q 022213 119 AVEVILSVLARP-GANVLLPRPGWPY-YEG-IAQRKQV-EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCG 194 (301)
Q Consensus 119 al~~~~~~l~~~-gd~Vl~~~p~~~~-~~~-~~~~~g~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG 194 (301)
+++.++.+++++ ++.|+. .-.|.. +.. ..+..|. ++..++.. .+..+|+++++ . ++.|.+++..|.||
T Consensus 79 ~~~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~--~g~~~d~~~i~----~-~~~V~~~h~~t~tG 150 (378)
T PRK03080 79 AWEMALWSLLGARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEAD--YGSLPDLSAVD----F-DRDVVFTWNGTTTG 150 (378)
T ss_pred HHHHHHHhcCCCCcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccC--CCCCCCHhhcC----C-CCCEEEEecCCccc
Confidence 999999999874 445554 334443 333 2356788 88887753 33456766643 2 56688999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeC
Q 022213 195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTND 268 (301)
Q Consensus 195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~ 268 (301)
..++ +++|++ +++|+++++|.+.+... .+..+..+ + +++.|..|+++. +| +|+++++.
T Consensus 151 ~~~p---i~~I~~--~~~g~~~vVDa~qs~G~----~pidv~~i--D---~~~~s~~K~l~~P~G--~g~l~v~~ 209 (378)
T PRK03080 151 VRVP---VARWIG--ADREGLTICDATSAAFA----LPLDWSKL--D---VYTFSWQKVLGGEGG--HGMAILSP 209 (378)
T ss_pred eecc---chhhcc--ccCCCeEEEeccccccc----CCCCHHHC--c---EEEEehhhhCCCCCc--eEEEEECH
Confidence 9999 777777 78899999999998733 33344432 1 889999999765 56 77777753
No 293
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=99.34 E-value=1.9e-10 Score=100.20 Aligned_cols=179 Identities=18% Similarity=0.281 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCEEE---cCCHHHHHHHHHHHhcCCCCEEE-EcCCCCcchHHHH----------HhcCc
Q 022213 88 PARRAIADYLSRDLPYKLSADDVYV---TLGCKQAVEVILSVLARPGANVL-LPRPGWPYYEGIA----------QRKQV 153 (301)
Q Consensus 88 ~lr~~ia~~l~~~~~~~~~~~~i~~---t~g~~~al~~~~~~l~~~gd~Vl-~~~p~~~~~~~~~----------~~~g~ 153 (301)
.=|+.+-+.+.+.++ .|.-++ ..++|+||..++.++++|||+++ +.-.-|.....++ +..|+
T Consensus 54 ~GRd~le~iyA~vfg----aE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi 129 (403)
T PF06838_consen 54 IGRDKLERIYADVFG----AEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGI 129 (403)
T ss_dssp HHHHHHHHHHHHHCT-----SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-
T ss_pred ccHHHHHHHHHHHhC----chhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCc
Confidence 345555555555443 444444 45689999999999999999988 4555566554444 56788
Q ss_pred eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcC-CCCCcccCCCHHHHHHHHHHHHhC--CCeEEEccCCcccccCCC
Q 022213 154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN-PGNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSI 230 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~-p~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~ 230 (301)
....+++.++. .+|++.+++.+++++|.+++.- ....+=..++.++++++++++++. ++++++|+||++|+-..+
T Consensus 130 ~Y~~v~L~~dg--~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~E 207 (403)
T PF06838_consen 130 KYREVPLTEDG--TIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQE 207 (403)
T ss_dssp EEEE--B-TTS--SB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-
T ss_pred eeEEEeecCCC--CcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccC
Confidence 89999986644 4999999999998899988863 344445568889999999998754 789999999999875432
Q ss_pred CCCCccccCCCCCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213 231 PYTPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 231 ~~~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (301)
+..+ +.+ ++.+|+-|+-|.. -.--||+++. ++++++......
T Consensus 208 -P~~v---GAD---l~aGSLIKNpGGgiAptGGYIaGr--------~~lVe~~a~RLT 250 (403)
T PF06838_consen 208 -PTEV---GAD---LMAGSLIKNPGGGIAPTGGYIAGR--------KDLVERAAYRLT 250 (403)
T ss_dssp -GGGG---T-S---EEEEETTSGGGTTT-SS-EEEEES--------HHHHHHHHHHHS
T ss_pred -cccc---chh---heeccceeCCCCCccCcCCEEech--------HHHHHHHHhhhc
Confidence 2222 222 9999999996542 1123899983 468888876543
No 294
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.33 E-value=1.2e-10 Score=107.30 Aligned_cols=217 Identities=13% Similarity=0.048 Sum_probs=136.6
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCC-CCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----FNC-YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----~~~-Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
....|+|-..+. .+++.+.+++...+.+.- ..+ |+..+.+.++.....+..++-++ .+.-+|-.-+
T Consensus 48 q~~~l~LiasEN------~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~--a~~anvqp~S 119 (493)
T PRK13580 48 QRSSLKLIASEN------YSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFG--AEHAYVQPHS 119 (493)
T ss_pred HhcCceEecccc------cCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhC--CCcccccCCC
Confidence 366788866653 234677777776654311 112 33333455566555555555454 2333444444
Q ss_pred CHHHHHHHHHHHhcCC-------------------------------CCEEEEcCCCCcchH-----HHHHhcCceEEEe
Q 022213 115 GCKQAVEVILSVLARP-------------------------------GANVLLPRPGWPYYE-----GIAQRKQVEVRHF 158 (301)
Q Consensus 115 g~~~al~~~~~~l~~~-------------------------------gd~Vl~~~p~~~~~~-----~~~~~~g~~~~~~ 158 (301)
++.|...++.++++| ||+|+-.++...++. .-+.....+...+
T Consensus 120 -g~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y 198 (493)
T PRK13580 120 -GADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSY 198 (493)
T ss_pred -cHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEec
Confidence 468888899999876 899997766664331 1111112445555
Q ss_pred ecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC-ccc
Q 022213 159 DLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP-MGL 237 (301)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~-~~~ 237 (301)
+++.+ ...+|.+++++.++++++.+++++.+|- |...+ +++|.++|+++|+++++|+++..-.+++..... ...
T Consensus 199 ~vd~~-~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~ 273 (493)
T PRK13580 199 GVDPD-TGLLDYDEIAALAREFKPLILVAGYSAY-PRRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDP 273 (493)
T ss_pred ccCcc-cCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcC---HHHHHHHHHHcCCEEEEECchhhceeccccchhhcCC
Confidence 65533 3469999999999988888889988877 44777 888888899999999999999986664322110 000
Q ss_pred cCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213 238 FGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 238 ~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
.. .--|+++|++|++. |-+.|+++++. ++++.+.
T Consensus 274 ~~--~~D~vtgT~hKaL~--GP~GG~I~~~~--------~l~~~L~ 307 (493)
T PRK13580 274 VP--HADIVTTTTHKTLR--GPRGGLVLAKK--------EYADAVD 307 (493)
T ss_pred CC--CCcEEEeCChhhcc--CCCeEEEEecH--------HHHHHHh
Confidence 11 11288999999963 33458888743 3666664
No 295
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.32 E-value=2.2e-10 Score=106.45 Aligned_cols=229 Identities=13% Similarity=0.086 Sum_probs=134.3
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.++|+..|.-... --..++.+.+++.++++.... +.......+...++++.+.+..+ ....+.|+++++++
T Consensus 38 D~dG~~ylD~~~g~~~~~-lGH~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~lae~L~~~~p-~~~~~~v~f~~SGs 113 (445)
T PRK08593 38 DVDGKTYIDLLASASSQN-VGHAPPRVVEAIKAQADKFIH--YTPAYMYHEPLVRLAKKLCELAP-GDFEKRVTFGLSGS 113 (445)
T ss_pred eCCCCEEEECCccHHhhc-CCCCCHHHHHHHHHHHHhccC--ccccccCCHHHHHHHHHHHHhCC-CCCCCEEEECCchH
Confidence 456888999977622111 112457888999998874321 21111223455556666655322 11125899999999
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHH-hcCc-------------eEEEeecCCCCC--CC-CC-------HH
Q 022213 118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQ-RKQV-------------EVRHFDLLPERN--WE-VD-------LD 171 (301)
Q Consensus 118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~-~~g~-------------~~~~~~~~~~~~--~~-~~-------~~ 171 (301)
+|.+.+++.... ...+|+...-+|++...... ..+. .+..++...... +. .+ ++
T Consensus 114 eA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (445)
T PRK08593 114 DANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLA 193 (445)
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHH
Confidence 999999986532 23578888888887543222 1110 122233211000 00 11 13
Q ss_pred HHHhhcc-----cCccEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213 172 AVEALAD-----KNTAAMVIINPGNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI 245 (301)
Q Consensus 172 ~l~~~~~-----~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi 245 (301)
.+++.+. ++..++++.-.....|.+ .+.+.+++|.++|++||+++|.||++..+...+..+ ....++-..+++
T Consensus 194 ~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~-a~~~~gv~pDi~ 272 (445)
T PRK08593 194 PLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS-SISHFNITPDLM 272 (445)
T ss_pred HHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH-HHHhcCCCCCEe
Confidence 3443332 233444444446666776 788999999999999999999999998765444321 112222223334
Q ss_pred EEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213 246 TLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 246 ~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
+++|.++ .|+++|+++++. ++++.+.
T Consensus 273 ---t~gK~l~-~G~p~gav~~~~--------~i~~~~~ 298 (445)
T PRK08593 273 ---SFGKSLA-GGMPMSAIVGRK--------EIMESLE 298 (445)
T ss_pred ---eeccccc-CCcccEEEEEcH--------HHHhhhc
Confidence 7899975 679999999843 4666654
No 296
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.31 E-value=5.8e-11 Score=103.82 Aligned_cols=213 Identities=19% Similarity=0.220 Sum_probs=147.7
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCCC-CCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----FNCY-ATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+++--...+|. -.+.-.+.+.+++.+.++... ..+. +.....-.|.+++|++.+ .+..++.++
T Consensus 171 k~VtVWCSNDY---Lgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHq--------K~aALlFsS 239 (570)
T KOG1360|consen 171 KKVTVWCSNDY---LGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQ--------KEAALLFSS 239 (570)
T ss_pred CceEEEecCcc---ccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhc--------Ccceeeeee
Confidence 45555555553 345667889999999987421 1111 122335689999999983 355666666
Q ss_pred HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc----CccEEEEcCC
Q 022213 116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK----NTAAMVIINP 189 (301)
Q Consensus 116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p 189 (301)
+.-|.+..+..|.+ ||=.|...+-.+.+....++..+++-..+.. .|++.|++.+.. -+|+|.+.+.
T Consensus 240 CfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns~v~K~IFrH-------ND~~hL~~lL~~~~~svPKivAFEtV 312 (570)
T KOG1360|consen 240 CFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRH-------NDLDHLEQLLQSSPKSVPKIVAFETV 312 (570)
T ss_pred eeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhcCCcceeecc-------CCHHHHHHHHHhCCCCCCceEEEeee
Confidence 77777777777754 7766666666666666666666655433332 478888887743 4678888999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCE-EEEecCcccCCCCcceeEEEEee
Q 022213 190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPV-ITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~v-i~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+..+|.+-+ +++|++++++||.+-.+||+++.-.|+.. -..+..-+. ..++ |+-+++.|+||+-| ||+++.
T Consensus 313 hSM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~r-GaGvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat 385 (570)
T KOG1360|consen 313 HSMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGPR-GAGVGERDGVMHKVDIISGTLGKAFGCVG---GYIAAT 385 (570)
T ss_pred eccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccCC-CCCccccCCcchhhhhcccchhhhccccc---ceehhh
Confidence 999999999 99999999999999999999998777532 222222211 1122 88999999999998 999875
Q ss_pred CCCCcccchhHHHHHHhhhc
Q 022213 268 DPNGIFQKSGIIDSIKDCLS 287 (301)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~ 287 (301)
. .+++.+|.+..
T Consensus 386 ~--------~LvDmiRSyAa 397 (570)
T KOG1360|consen 386 R--------KLVDMIRSYAA 397 (570)
T ss_pred h--------hHHHHHHHhcC
Confidence 4 48888888754
No 297
>PLN02880 tyrosine decarboxylase
Probab=99.30 E-value=3e-10 Score=106.47 Aligned_cols=198 Identities=11% Similarity=0.047 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-----CCCEEEcCCHHHHHHHHHHHhcC-----C---
Q 022213 64 AEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-----ADDVYVTLGCKQAVEVILSVLAR-----P--- 130 (301)
Q Consensus 64 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~i~~t~g~~~al~~~~~~l~~-----~--- 130 (301)
+.+.+...+.. ....|....+..++++.+.+|+.+-+|.+-. ...-++|+|+|++...++.+..+ .
T Consensus 99 lad~l~~~~n~-~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~ 177 (490)
T PLN02880 99 LGEMLSAGLNI-VGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKN 177 (490)
T ss_pred HHHHHHHhhcc-CCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444432 2334555556789999999999887764321 12467899999998777765532 1
Q ss_pred --CC-EEEEcCCCCcchHHHHHhcCce---EEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCC
Q 022213 131 --GA-NVLLPRPGWPYYEGIAQRKQVE---VRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 131 --gd-~Vl~~~p~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~ 198 (301)
.. .|++.+-+|.+....+..+|+. ++.++.+...++.+|++.|++.+.+ .+.+|+.+-.+..||.+-+
T Consensus 178 ~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp 257 (490)
T PLN02880 178 ALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP 257 (490)
T ss_pred ccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc
Confidence 12 4556778899999999999985 6778876555678999999998853 1344555666889999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC-CCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY-TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~-~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+++|+++|++||+|+.+|.+|+.+...-+.. ..+..+.. . --+..+++|. +.....+|.+++.+
T Consensus 258 ---l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~-a-DSit~d~HKw-l~~P~~~g~llvr~ 322 (490)
T PLN02880 258 ---LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEE-A-DSFNMNAHKW-FLTNFDCSLLWVKD 322 (490)
T ss_pred ---HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchh-c-CEEEECchhh-cCCCccEEEEEEeC
Confidence 8999999999999999999999865321111 01111111 1 1556699999 46667899998865
No 298
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.30 E-value=1.3e-10 Score=104.57 Aligned_cols=186 Identities=13% Similarity=0.019 Sum_probs=125.3
Q ss_pred ChHHHHHHHHHHHhc---CCCCCCCCCCCCH---HHHHHHHHHHhhhCCCCCCCCCEEEcCC-HHHHHHHHHHHhcCCCC
Q 022213 60 TAVEAEDAIVDAVRS---GKFNCYATNSGIP---PARRAIADYLSRDLPYKLSADDVYVTLG-CKQAVEVILSVLARPGA 132 (301)
Q Consensus 60 ~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~---~lr~~ia~~l~~~~~~~~~~~~i~~t~g-~~~al~~~~~~l~~~gd 132 (301)
.|..+.+++.+.+.. .....|......+ ++.+.+.+.+++.++. -+..+|++++| +|.++++++.+++.+||
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~-~~~~~v~~~~gsgT~a~ea~~~nl~~~~~ 81 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNI-PDNYEVLFLQGGATGQFAAVPLNLLAEGK 81 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCC-CCCceEEEEcCCchHHHHHHHHhcCCCCC
Confidence 467888888888763 1122333222223 3333333444333342 12346877766 99999999999999999
Q ss_pred EEEEcCCCCcc--hHHHHHhcCceEEEeecCCC--CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHH
Q 022213 133 NVLLPRPGWPY--YEGIAQRKQVEVRHFDLLPE--RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208 (301)
Q Consensus 133 ~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~ 208 (301)
++++..-+..+ +...++..|+ +..+..... .+..+++++++ ++++++.|++++..+.||+..+ ++
T Consensus 82 ~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~--------~l 150 (349)
T TIGR01364 82 VADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR--------EL 150 (349)
T ss_pred eEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc--------ee
Confidence 99877766654 4677788888 666665322 22245666555 3457889999999999999875 55
Q ss_pred HHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 209 ~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
++.+++++++|.+.+. +..+..+..++ +++.|..|.+|.|| +|.++++.
T Consensus 151 ~~~~~~l~iVDavss~----g~~~id~~~~d-----~~~~ssqK~lgP~G--lg~l~~s~ 199 (349)
T TIGR01364 151 PDVKNAPLVADMSSNI----LSRPIDVSKFG-----LIYAGAQKNIGPAG--LTVVIVRK 199 (349)
T ss_pred cccCCCeEEEEccccc----cCccCCHHHcc-----EEEEecccccCCCc--eEEEEECH
Confidence 6678999999999986 33344444432 88999999998676 78887754
No 299
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.30 E-value=3.6e-10 Score=102.97 Aligned_cols=222 Identities=14% Similarity=0.083 Sum_probs=140.9
Q ss_pred ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
...+++.+|||..|..... --..+|.+.+++++++..-....+... ..+...++|+.|...... ...+.+++++++
T Consensus 51 ~DvdG~~ylDf~sgi~v~~-~GH~hP~Vv~Av~~q~~~~~h~~~~~~--~~e~~v~~ae~L~~~~p~-~~~~~~~f~~sG 126 (447)
T COG0160 51 YDVDGNEYLDFLSGIAVLN-LGHNHPRVVEAVKRQLAKLNHTHTRDL--YYEPYVELAEKLTALAPG-SGLKKVFFGNSG 126 (447)
T ss_pred EeCCCCEEEEcccCcchhc-cCCCCHHHHHHHHHHHHHhhcccCCcc--cchhHHHHHHHHHHhCCc-ccCCeEEecCCc
Confidence 3456889999999633221 124568899999998875331122221 124555555555442221 145679999999
Q ss_pred HHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHH-HhcC-------------ceEEEeecCCC--CCCC--------CCH
Q 022213 117 KQAVEVILSVLAR--PGANVLLPRPGWPYYEGIA-QRKQ-------------VEVRHFDLLPE--RNWE--------VDL 170 (301)
Q Consensus 117 ~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~-~~~g-------------~~~~~~~~~~~--~~~~--------~~~ 170 (301)
++|.+.+++.... ....|+...-+|++..... ...+ -.+..+|.... ..+. ...
T Consensus 127 aeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~ 206 (447)
T COG0160 127 AEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDAL 206 (447)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHH
Confidence 9999999987752 3467888888887532222 1111 11344443221 1111 123
Q ss_pred HHHHhhccc-----CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213 171 DAVEALADK-----NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP 243 (301)
Q Consensus 171 ~~l~~~~~~-----~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~ 243 (301)
+.++..+.. ...+.++.-| +...|.. .+.+.++++.++|++||+++|+||++..+..++ ....+..++-..+
T Consensus 207 ~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG-~~fa~E~~gv~PD 285 (447)
T COG0160 207 EYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG-KMFAFEHFGVEPD 285 (447)
T ss_pred HHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-cchhhhhcCCCCC
Confidence 334443321 2234444445 6667764 455788999999999999999999999998887 6667776665566
Q ss_pred EEEEecCcccCCCCcceeEEEEee
Q 022213 244 VITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 244 vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+| ++||.++. |+.+|.++..
T Consensus 286 iv---t~aK~ig~-G~Pl~avv~r 305 (447)
T COG0160 286 IV---TLAKSLGG-GLPLSAVVGR 305 (447)
T ss_pred EE---EecccccC-CCceeEEecc
Confidence 77 78999776 9999999974
No 300
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.30 E-value=3.8e-10 Score=104.69 Aligned_cols=222 Identities=15% Similarity=0.142 Sum_probs=131.8
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+||+..|.-... --...+.+.+++.++++.... +.......+....+|+.+.+..+. -..+.++++++++
T Consensus 50 D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~lAe~L~~~~p~-~~~~~v~f~~SGs 125 (441)
T PRK05769 50 DVDGNVYLDFNAGIAVTN-VGHAHPKVVKAVKEQAEKFLH--YSLTDFYYEPAVELAERLVEIAPG-GFEKKVFFTNSGT 125 (441)
T ss_pred eCCCCEEEECCCchhhcc-cCCCCHHHHHHHHHHHHhccC--ccCcccCCHHHHHHHHHHHHhCCC-CCCCEEEECCchH
Confidence 446788899987732211 122456788999998874321 111111235566677777553221 1136899999999
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCC--CC-C--------CH
Q 022213 118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERN--WE-V--------DL 170 (301)
Q Consensus 118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~--~~-~--------~~ 170 (301)
+|.+.+++.... ...+|+...-+|++........ +. .+..++...... +. - ..
T Consensus 126 EA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (441)
T PRK05769 126 ESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVL 205 (441)
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHH
Confidence 999999986642 3467888888888764333221 11 112222210000 00 0 12
Q ss_pred HHHHh-hcc----cCccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213 171 DAVEA-LAD----KNTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP 243 (301)
Q Consensus 171 ~~l~~-~~~----~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~ 243 (301)
+.+++ .++ ....+.++.-| ....|.. .+.+.+++|.++|++||+++|.||++..+...+..+ ....++-..+
T Consensus 206 ~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~-a~~~~gv~pD 284 (441)
T PRK05769 206 DFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMF-AIEHFGVEPD 284 (441)
T ss_pred HHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccccee-hhhccCCCCC
Confidence 33554 222 22334455555 4455664 457889999999999999999999999865544322 2223332334
Q ss_pred EEEEecCcccCCCCcceeEEEEeeC
Q 022213 244 VITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 244 vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
++ ++||.++ .|+++|+++++.
T Consensus 285 iv---t~~K~l~-~G~p~gav~~~~ 305 (441)
T PRK05769 285 II---TLAKAIA-GGLPLGAVIGRA 305 (441)
T ss_pred EE---EEccccc-CCcccEEEEEeh
Confidence 44 5799977 689999998854
No 301
>PLN02590 probable tyrosine decarboxylase
Probab=99.28 E-value=8.9e-10 Score=103.68 Aligned_cols=199 Identities=12% Similarity=0.048 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-----CCCEEEcCCHHHHHHHHHHHhcC---------
Q 022213 64 AEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-----ADDVYVTLGCKQAVEVILSVLAR--------- 129 (301)
Q Consensus 64 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~i~~t~g~~~al~~~~~~l~~--------- 129 (301)
+-+.+...+.. ....|....+..++++.+.+|+.+.++.+-. ...=++++|+|++...++.+..+
T Consensus 147 lgd~l~sa~n~-~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~ 225 (539)
T PLN02590 147 LGEMLNAGLSV-VGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKT 225 (539)
T ss_pred HHHHHHHhccc-ccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhccc
Confidence 34444444432 2335666667889999999999987764421 12357789999998777665432
Q ss_pred --CCCEEEEcCCCCcchHHHHHhcCc---eEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCC
Q 022213 130 --PGANVLLPRPGWPYYEGIAQRKQV---EVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 130 --~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~ 198 (301)
+.-.|++.+.+|.+....+..+|+ .++.++++..+++.+|++.|++.+.+ .+..|+.+-.+..||.+=+
T Consensus 226 ~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp 305 (539)
T PLN02590 226 LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP 305 (539)
T ss_pred CCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC
Confidence 111455677789999899999998 47778876555678999999998854 2344555666788999877
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC-CccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT-PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~-~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
+++|+++|++||+|+.+|.+|+.+..--+... .+..+ +..+-| ..+++|. +....-+|.+++.++
T Consensus 306 ---l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gi-e~ADSi-t~D~HK~-l~~p~~cg~llvr~~ 371 (539)
T PLN02590 306 ---LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGI-ENADSF-NMNAHKW-LFANQTCSPLWVKDR 371 (539)
T ss_pred ---HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCC-ccCCEE-EECchhh-cCcCcCEEEEEecCH
Confidence 89999999999999999999998663211111 11111 111223 4489999 556677898888664
No 302
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.28 E-value=7e-11 Score=113.38 Aligned_cols=173 Identities=13% Similarity=0.157 Sum_probs=123.0
Q ss_pred CCCCCCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH-HHhcCceEE
Q 022213 79 CYATNSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI-AQRKQVEVR 156 (301)
Q Consensus 79 ~Y~~~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~ 156 (301)
+.-.+.| +.+..+..|+.++ .....++++|+|.++.+++++++.+||+|+++..+|-+.... +...|+.++
T Consensus 168 dL~~~eG~i~eAq~~AA~~fg-------Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PV 240 (720)
T PRK13578 168 DLLIHEGAAKDAQKHAAKVFN-------ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240 (720)
T ss_pred CCCCCChHHHHHHHHHHHHhC-------CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEE
Confidence 3333344 4567777777762 235688999999999999999999999999999999988774 888999999
Q ss_pred EeecCCCCCCC----CCH-----HHHHhhcccC----------ccEEEEcCCCCCcccCCCHHHHHHHHHH-HHhCCCeE
Q 022213 157 HFDLLPERNWE----VDL-----DAVEALADKN----------TAAMVIINPGNPCGNVFTYHHLQEIAEM-ARKLRVMV 216 (301)
Q Consensus 157 ~~~~~~~~~~~----~~~-----~~l~~~~~~~----------~~~v~l~~p~nptG~~~~~~~l~~i~~~-~~~~~~~i 216 (301)
++.... +.++ ++. +.+++.+.+. .+++++++|+. .|++++ +++|+++ ++.++ .|
T Consensus 241 Yl~P~~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~l 314 (720)
T PRK13578 241 YLETAR-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YI 314 (720)
T ss_pred Eeeccc-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cE
Confidence 987543 2232 344 4477766543 37788888874 799999 7888887 57777 99
Q ss_pred EEccCCcccc-cCCC--CCCCc-cccCCC-CCEEEEecCcccCCCCcceeEEEEe
Q 022213 217 VADEVYGHLT-FGSI--PYTPM-GLFGSI-VPVITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 217 i~D~~y~~~~-~~~~--~~~~~-~~~~~~-~~vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
++||+|..+. |.+. .++++ ...+.+ .-++++.|.+|. ++++--+.++-
T Consensus 315 lvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKt--L~alTQaS~LH 367 (720)
T PRK13578 315 LFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQ--QAGFSQTSQIH 367 (720)
T ss_pred EEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhc--chhhhhHhhhh
Confidence 9999998653 3321 12212 122222 347999999998 56666666553
No 303
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=99.27 E-value=2.4e-10 Score=97.06 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=112.0
Q ss_pred CCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCc--chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-Ccc
Q 022213 106 SADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP--YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTA 182 (301)
Q Consensus 106 ~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 182 (301)
++...++..+++.+++.++..+++|||+|++..-+-. .+....+++|+++..++.+ .+....++++.+.+++ +++
T Consensus 67 n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~--~G~~~~le~i~~~lsqh~p~ 144 (385)
T KOG2862|consen 67 NAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEAD--IGQAVPLEEITEKLSQHKPK 144 (385)
T ss_pred CCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecC--cccCccHHHHHHHHHhcCCc
Confidence 3446777788899999999999999999997655443 3467788999999998664 3556899999998876 678
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC-ccee
Q 022213 183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP-GWRF 261 (301)
Q Consensus 183 ~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~-G~rv 261 (301)
++++++-...||+..+. +..+.++|++|+.++++|.+-+- +...-.++.+.-+ +...+.-|++++| |+-+
T Consensus 145 ~vfv~hgdsSTgV~q~~--~~~~g~lc~k~~~lllVD~VaSl----ggt~F~mDewgVD---vaytgSQKaL~aP~GLsi 215 (385)
T KOG2862|consen 145 AVFVTHGDSSTGVLQDL--LAISGELCHKHEALLLVDTVASL----GGTEFEMDEWGVD---VAYTGSQKALGAPAGLSI 215 (385)
T ss_pred eEEEEecCccccccchH--HHHHHHHhhcCCeEEEEechhhc----CCccceehhhccc---EEEecchhhcCCCCCcce
Confidence 99999999999999882 34445678899999999999874 2222234444333 7777889998885 6433
Q ss_pred EEEEeeC
Q 022213 262 GWLVTND 268 (301)
Q Consensus 262 G~~~~~~ 268 (301)
+..++
T Consensus 216 --isfS~ 220 (385)
T KOG2862|consen 216 --ISFSD 220 (385)
T ss_pred --eecCH
Confidence 55443
No 304
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.23 E-value=1.6e-09 Score=101.14 Aligned_cols=221 Identities=12% Similarity=0.050 Sum_probs=126.3
Q ss_pred cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCCC-CCCCCCHHHHHHHHH
Q 022213 22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----FNCY-ATNSGIPPARRAIAD 95 (301)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----~~~Y-~~~~g~~~lr~~ia~ 95 (301)
...|.++++..... ....|+|-..+. .+.+.+.+++...+.+.- ..+| +-...+.++.+...+
T Consensus 19 d~~~~~~i~~e~~~-----q~~~l~liasen------~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~ 87 (475)
T PLN03226 19 DPEIADIIEKEKRR-----QWKGLELIASEN------FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQK 87 (475)
T ss_pred CHHHHHHHHHHHHH-----HHcCeeEecCCc------cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHH
Confidence 45566665533321 356788866653 345678888888773211 1122 111223333331112
Q ss_pred HHhhhCCCCCCCCCEEE---cCCHHHHHHHHHHHhcCCCCEEEEcCC---CCcchHHHHH-----hcCceEE--EeecCC
Q 022213 96 YLSRDLPYKLSADDVYV---TLGCKQAVEVILSVLARPGANVLLPRP---GWPYYEGIAQ-----RKQVEVR--HFDLLP 162 (301)
Q Consensus 96 ~l~~~~~~~~~~~~i~~---t~g~~~al~~~~~~l~~~gd~Vl~~~p---~~~~~~~~~~-----~~g~~~~--~~~~~~ 162 (301)
...+.++ ...+.+.+ .++++.|...++.++++|||+|+..+. +|........ ..+.... .+.+++
T Consensus 88 ~~~~~f~--~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~ 165 (475)
T PLN03226 88 RALEAFR--LDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE 165 (475)
T ss_pred HHHHHhC--CCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC
Confidence 2222222 23334433 477889999999999999999998543 3332221111 1111111 233333
Q ss_pred CCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC-CCCCccccCC
Q 022213 163 ERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI-PYTPMGLFGS 240 (301)
Q Consensus 163 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~~~ 240 (301)
++..+|++++++.+.+ +++.++ +..++ +|...+ +++|.++|+++|+++++|+++..-..... ...++..
T Consensus 166 -~~g~iD~d~Le~~l~~~~pklIv-~~~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~--- 236 (475)
T PLN03226 166 -STGLIDYDKLEKKAMLFRPKLII-AGASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEY--- 236 (475)
T ss_pred -CCCCcCHHHHHHHHhhcCCeEEE-EecCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCC---
Confidence 3456899999998864 566544 33333 778888 77888889999999999999987554322 1122221
Q ss_pred CCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 241 IVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
--++++|++|+++ |-+-|+++++.
T Consensus 237 --~Div~~t~hK~L~--GP~Gg~I~~~~ 260 (475)
T PLN03226 237 --CDVVTTTTHKSLR--GPRGGMIFFRK 260 (475)
T ss_pred --CeEEEecCccccc--CCCceEEEEch
Confidence 1188999999963 33338887743
No 305
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.22 E-value=2e-09 Score=101.33 Aligned_cols=184 Identities=19% Similarity=0.187 Sum_probs=126.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCCC-C---------C-CCCCEEEcCCHHHHHHHHHHHhcC-----------------
Q 022213 78 NCYATNSGIPPARRAIADYLSRDLPY-K---------L-SADDVYVTLGCKQAVEVILSVLAR----------------- 129 (301)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~l~~~~~~-~---------~-~~~~i~~t~g~~~al~~~~~~l~~----------------- 129 (301)
..|.......++.+.+.+|+.+..+. . . +...-++|+|+|+|...++.+..+
T Consensus 119 ~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl 198 (522)
T TIGR03799 119 VKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGL 198 (522)
T ss_pred ceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccc
Confidence 35555567789999999999875421 0 1 112357799999998777665422
Q ss_pred ---------CCCEEEEcCCCCcchHHHHHhcCc---eEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEc--CCCC
Q 022213 130 ---------PGANVLLPRPGWPYYEGIAQRKQV---EVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVII--NPGN 191 (301)
Q Consensus 130 ---------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~--~p~n 191 (301)
++..|++.+-.|.+....++..|+ +++.++++. ++.+|++.|++.++ ++++.++++ ..++
T Consensus 199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt 276 (522)
T TIGR03799 199 FAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTT 276 (522)
T ss_pred hhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCc
Confidence 124688888999999888888888 688888754 45699999999885 344444444 4577
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC-CCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 192 PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY-TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 192 ptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~-~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
.||.+-+ +++|+++|+++|+++++|.+|+....-.... ..+..+.. .+ .+..+.+|.++.| ..+|.+++.++
T Consensus 277 ~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~-aD-Sit~d~HK~l~~P-~g~G~llvr~~ 349 (522)
T TIGR03799 277 ETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIER-AD-SVTIDAHKQLYVP-MGAGMVLFKDP 349 (522)
T ss_pred CCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchh-CC-EEEEChhhcCCcC-cccEEEEEeCH
Confidence 9999999 8999999999999999999998643211100 00111111 11 5667999985544 56898888653
No 306
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.21 E-value=9.3e-10 Score=99.55 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=122.1
Q ss_pred CCChHHHHHHHHHHHhcC---CCCCCCCCCC-------CHHHHHHHHHHHhhhCCCCCCCCCE-EEcCCHHHHHHHHHHH
Q 022213 58 FRTAVEAEDAIVDAVRSG---KFNCYATNSG-------IPPARRAIADYLSRDLPYKLSADDV-YVTLGCKQAVEVILSV 126 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g-------~~~lr~~ia~~l~~~~~~~~~~~~i-~~t~g~~~al~~~~~~ 126 (301)
-..|+.+++++.+.+.+. ....+..... +.+.++.+++++ +.. +..+| +++++++.+++.++..
T Consensus 12 ~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~----~~~-~~~~v~~~~gsgt~~~Ea~~~n 86 (360)
T PRK05355 12 AMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELL----NIP-DNYKVLFLQGGASLQFAMVPMN 86 (360)
T ss_pred CCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHh----CCC-CCcEEEEEcCCchHHHHHHHHh
Confidence 356789999998876421 1111211111 234444445544 321 22345 5557788999999999
Q ss_pred hcCCCCEEEEcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHh-hcccCccEEEEcCCCCCcccCCCHHHHH
Q 022213 127 LARPGANVLLPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEA-LADKNTAAMVIINPGNPCGNVFTYHHLQ 203 (301)
Q Consensus 127 l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~p~nptG~~~~~~~l~ 203 (301)
++.+||++++..-+..+ +...++..|.. ..+...+..+. .+..++++ .++++++.|.+++..+.||+..+ .+.
T Consensus 87 l~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~-~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~--~i~ 162 (360)
T PRK05355 87 LLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGF-TYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH--ELP 162 (360)
T ss_pred cCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCC-CCCCChhhccCCCCCCEEEEccCCCcceEecC--ccc
Confidence 99999999877666654 45677788865 55554332333 33334444 67778899999999999999984 255
Q ss_pred HHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 204 ~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+| +|+++|+|.+.+. +..+..+..++ +++.|..|.+|-|| +|.++++.
T Consensus 163 ~i------~g~l~vVDavss~----g~~~idv~~~d-----~~~~ssqK~lgP~G--lg~l~~s~ 210 (360)
T PRK05355 163 DT------GDVPLVADMSSDI----LSRPIDVSKFG-----LIYAGAQKNIGPAG--LTIVIVRE 210 (360)
T ss_pred cc------CCCcEEEEcCccc----cCccCCHHHcc-----EEEEeccccccCCc--eEEEEECH
Confidence 55 7999999999987 33444454442 88999999988565 78887755
No 307
>PLN02271 serine hydroxymethyltransferase
Probab=99.21 E-value=2.8e-09 Score=99.09 Aligned_cols=206 Identities=13% Similarity=0.071 Sum_probs=130.3
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC-----C-CCCCCCCHHHHHHHHHHHhhhCCCCCC-C-CCEEEc
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN-----C-YATNSGIPPARRAIADYLSRDLPYKLS-A-DDVYVT 113 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~-----~-Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~-~~i~~t 113 (301)
..-|+|=..+. .+.+.+.+++...+.+.-.. + |+-.+.+.++.....+...+.++.+.. . -||-.-
T Consensus 148 ~~~l~LIASEN------~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~ 221 (586)
T PLN02271 148 FKGIELIASEN------FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY 221 (586)
T ss_pred hcCeeeccccc------cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec
Confidence 56677755542 24467777776665432111 1 222223345544444444443442211 1 344444
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH---------HHhcCceEEEee--cCCCCCCCCCHHHHHh-hcccCc
Q 022213 114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI---------AQRKQVEVRHFD--LLPERNWEVDLDAVEA-LADKNT 181 (301)
Q Consensus 114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~---------~~~~g~~~~~~~--~~~~~~~~~~~~~l~~-~~~~~~ 181 (301)
+++.|...++.++++|||+|+..+..+.++... +...|..+..++ +++ ....+|.+++++ +...++
T Consensus 222 -SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~-~~g~IDyd~lek~a~~~rP 299 (586)
T PLN02271 222 -SCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNP-QTGYIDYDKLEEKALDFRP 299 (586)
T ss_pred -cHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccccc-ccCccCHHHHHHHhhhcCC
Confidence 678999999999999999999988777754321 234565555554 433 344699999998 556689
Q ss_pred cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC-CCCCCccccCCCCCEEEEecCcccCCCCcce
Q 022213 182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS-IPYTPMGLFGSIVPVITLGSISKRWLVPGWR 260 (301)
Q Consensus 182 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~r 260 (301)
++|++..-.+| ..++ ++++.++|+++|+++++|.++..-.... ..+.++.. - -++.+|++|++ .|-|
T Consensus 300 KLII~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~--a---Dvvt~TTHKtL--rGPr 367 (586)
T PLN02271 300 KILICGGSSYP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDY--C---DIVTSTTHKSL--RGPR 367 (586)
T ss_pred eEEEECchhcc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcC--C---cEEEeCCcccC--CCCC
Confidence 98888777777 5677 7777888889999999999998644432 22222221 1 18899999995 5556
Q ss_pred eEEEEee
Q 022213 261 FGWLVTN 267 (301)
Q Consensus 261 vG~~~~~ 267 (301)
-|.++..
T Consensus 368 GG~I~~r 374 (586)
T PLN02271 368 GGIIFYR 374 (586)
T ss_pred ceEEEec
Confidence 6888764
No 308
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.20 E-value=2.1e-09 Score=100.22 Aligned_cols=223 Identities=15% Similarity=0.122 Sum_probs=137.8
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+||+..|--... .-..++.+.+++.++++... .|.. ..+.+..+|+.+.+..+ ..+.+.++++++
T Consensus 95 D~dG~~yiD~~~g~g~~~-lGh~~p~v~~av~~ql~~~~--~~~~---~~~~~~~lAe~l~~~~p---~~~~v~f~~SGs 165 (474)
T PLN02482 95 DVDGNEYIDYVGSWGPAI-IGHADDEVLAALAETMKKGT--SFGA---PCLLENVLAEMVIDAVP---SVEMVRFVNSGT 165 (474)
T ss_pred ECCCCEEEEecccccccc-cCCCCHHHHHHHHHHHhhCC--CCCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCChH
Confidence 446888899877632111 12345788999999987543 2322 23566677777766432 247999999999
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHH-hc--CceEE------EeecCC-CCC---CCCCHHHHHhhccc--C
Q 022213 118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQ-RK--QVEVR------HFDLLP-ERN---WEVDLDAVEALADK--N 180 (301)
Q Consensus 118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~-~~--g~~~~------~~~~~~-~~~---~~~~~~~l~~~~~~--~ 180 (301)
||.+.+++.... ..++|+...-+|+++...+. .. +.... .++... .+. .-.|++.+++.+.. .
T Consensus 166 EA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~ 245 (474)
T PLN02482 166 EACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKG 245 (474)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCC
Confidence 999999987753 23688888888988642211 10 00000 000000 000 00267888887753 2
Q ss_pred ccEEEEcCC-CCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213 181 TAAMVIINP-GNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG 258 (301)
Q Consensus 181 ~~~v~l~~p-~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G 258 (301)
..+.++..| ....|.+.+ .+.+++|.++|++||+++|+||+...+ ..+.. .....++-..+++ +++|.++ .|
T Consensus 246 ~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~-ga~~~~gv~PDi~---t~gK~lg-gG 319 (474)
T PLN02482 246 EIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYG-GAQEYFGITPDLT---TLGKVIG-GG 319 (474)
T ss_pred ceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcc-hHhHHhCCCCCEE---Eecchhh-CC
Confidence 334455555 455676554 688999999999999999999999876 33321 1122233233443 7899965 68
Q ss_pred ceeEEEEeeCCCCcccchhHHHHHH
Q 022213 259 WRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 259 ~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
+.+|.++++. ++++.+.
T Consensus 320 ~Pigav~g~~--------ei~~~~~ 336 (474)
T PLN02482 320 LPVGAYGGRR--------EIMEMVA 336 (474)
T ss_pred CceEEEEEcH--------HHHHhhc
Confidence 9999997632 4666664
No 309
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.19 E-value=1.6e-09 Score=100.24 Aligned_cols=218 Identities=13% Similarity=0.104 Sum_probs=131.5
Q ss_pred cccCCCCCeeeccCC--CCCCCCCCCChHHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213 36 VNKNDPRPVVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKF-NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYV 112 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g--~p~~~p~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~ 112 (301)
++..+++.++|+..| ... --..++.+.+++.+++..... ..| ...+.+..+|+.+.+..+ ...+.+++
T Consensus 69 l~D~dG~~ylD~~~g~~~~~---lGh~hp~v~~Av~~ql~~l~~~~~~----~~~~~~~~lAe~L~~~~p--~~~~~v~f 139 (442)
T TIGR03372 69 LIDTQGNEFIDCLGGFGIFN---VGHRNPNVIAAVENQLAKQPLHSQE----LLDPLRALLAKTLAALTP--GKLKYSFF 139 (442)
T ss_pred EEECCCCEEEECCccHHhhh---cCCCCHHHHHHHHHHHHhCCCcccc----cCCHHHHHHHHHHHHhCC--CCcCEEEE
Confidence 334568889999777 321 123457888999998874321 112 224455566666654322 12257999
Q ss_pred cCCHHHHHHHHHHHhcC----CC-CEEEEcCCCCcchHHHHHhcCceEE----EeecCCCCC--CCCCHHHHHhhccc--
Q 022213 113 TLGCKQAVEVILSVLAR----PG-ANVLLPRPGWPYYEGIAQRKQVEVR----HFDLLPERN--WEVDLDAVEALADK-- 179 (301)
Q Consensus 113 t~g~~~al~~~~~~l~~----~g-d~Vl~~~p~~~~~~~~~~~~g~~~~----~~~~~~~~~--~~~~~~~l~~~~~~-- 179 (301)
+++++||.+.+++.... .| .+|+...-+|++............. +.++.+.-. --.|.+.+++.++.
T Consensus 140 ~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~ 219 (442)
T TIGR03372 140 CNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECK 219 (442)
T ss_pred eCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHh
Confidence 99999999999986642 23 6789889889876433332211100 111111000 01356666665531
Q ss_pred ---CccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC
Q 022213 180 ---NTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW 254 (301)
Q Consensus 180 ---~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~ 254 (301)
...+.++.-| ....|... +.+.++++.++|++||+++|.||++..+...+. ......++-..+++ +++|.+
T Consensus 220 ~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~gv~PDiv---t~gK~l 295 (442)
T TIGR03372 220 KTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK-MFACEHEGVQPDIL---CLAKAL 295 (442)
T ss_pred cCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcccc-chhhhhcCCCCCee---eehhhh
Confidence 2234445555 44556655 678899999999999999999999987644443 22333333333444 589996
Q ss_pred CCCc-ceeEEEEee
Q 022213 255 LVPG-WRFGWLVTN 267 (301)
Q Consensus 255 ~~~G-~rvG~~~~~ 267 (301)
+ .| +.+|.++++
T Consensus 296 g-~G~~Pigavv~~ 308 (442)
T TIGR03372 296 G-GGVMPIGATIAT 308 (442)
T ss_pred c-CCcccceEEEec
Confidence 5 56 689998874
No 310
>PLN02263 serine decarboxylase
Probab=99.19 E-value=4.5e-09 Score=96.75 Aligned_cols=176 Identities=15% Similarity=0.002 Sum_probs=128.2
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCC
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP 162 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 162 (301)
+..++++.+-+|+.+-++.+-+.-.=++|+|+|+++..++.+..+ +...|++++-+|.+....++.+|++++.+|.+
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d- 208 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL- 208 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC-
Confidence 457888899999888766432111348899999999988887764 33478889999999999999999999999875
Q ss_pred CCCCCCCHHHHHhhcccC---ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC-----eEEEccCCcccccCC-CCCC
Q 022213 163 ERNWEVDLDAVEALADKN---TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV-----MVVADEVYGHLTFGS-IPYT 233 (301)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~---~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~ii~D~~y~~~~~~~-~~~~ 233 (301)
.++.+|++.|++.+.++ +.+|+.+..+.++|.+=+ +++|+++|+++|+ |+.+|.+|+.+...- ...+
T Consensus 209 -~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~ 284 (470)
T PLN02263 209 -VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAP 284 (470)
T ss_pred -CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccc
Confidence 35679999999988653 344556677889999988 8888888889986 999999998865411 0111
Q ss_pred CccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 234 PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 234 ~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
.+. +....+-|. .+.+|. +..-..+|.++..+
T Consensus 285 ~~d-f~~~vDSIs-vD~HK~-l~~P~~cgvll~R~ 316 (470)
T PLN02263 285 KVT-FKKPIGSVS-VSGHKF-VGCPMPCGVQITRM 316 (470)
T ss_pred ccC-CCcCccEEE-ECCccc-cCCCcCEEEEEEeh
Confidence 111 111122343 389998 55667789888864
No 311
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.17 E-value=4.1e-09 Score=94.68 Aligned_cols=222 Identities=14% Similarity=0.135 Sum_probs=146.1
Q ss_pred cCCCCCeeeccCCCC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 38 KNDPRPVVPLGYGDP-TAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
.-++..+|++..+.- ..+ -..++.+.+++++++.++. .|+.+ .++.-.+|+++.+..+ ..|.|-+++++
T Consensus 49 DvDGn~YIDy~~~~Gp~il--GH~~p~V~~Av~~~l~~G~--~fg~P---te~Ei~~Aell~~~~p---~~e~vrfvnSG 118 (432)
T COG0001 49 DVDGNEYIDYVLGWGPLIL--GHAHPAVVEAVQEQLERGL--SFGAP---TELEVELAELLIERVP---SIEKVRFVNSG 118 (432)
T ss_pred eCCCCEeeehhccCccccc--CCCCHHHHHHHHHHHHhcC--CCCCC---CHHHHHHHHHHHHhcC---cccEEEEecch
Confidence 446888999988843 222 2355679999999998654 57765 4677778888876433 34899999999
Q ss_pred HHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHH-HhcCceEEEe--ecCC---C---CC----CCCCHHHHHhhcccC-
Q 022213 117 KQAVEVILSVLAR--PGANVLLPRPGWPYYEGIA-QRKQVEVRHF--DLLP---E---RN----WEVDLDAVEALADKN- 180 (301)
Q Consensus 117 ~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~~--~~~~---~---~~----~~~~~~~l~~~~~~~- 180 (301)
|||...+++.... ..|+|+..+-+|++....+ ...|-..... |-.+ . +. -=.|++.+++++.+.
T Consensus 119 TEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g 198 (432)
T COG0001 119 TEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYG 198 (432)
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcC
Confidence 9999999987742 4589999999998764333 3333111111 0000 0 00 014789999888764
Q ss_pred -ccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC
Q 022213 181 -TAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV 256 (301)
Q Consensus 181 -~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~ 256 (301)
-.+.+|.-| .| .|. ...++.++.|-++|+++|.++|.||+--.|...-........+.+ ++ .++.|. ..
T Consensus 199 ~~IAaVIvEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~P--Dl---ttlGKi-IG 271 (432)
T COG0001 199 DDIAAVIVEPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEP--DL---TTLGKI-IG 271 (432)
T ss_pred CcEEEEEeccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCc--ch---hhhhhh-hc
Confidence 345556666 55 455 455678999999999999999999999887654212222222222 22 378999 56
Q ss_pred CcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213 257 PGWRFGWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 257 ~G~rvG~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
.|+.+|.+.++ .++++.+..
T Consensus 272 GGlP~ga~gGr--------~eiM~~~~p 291 (432)
T COG0001 272 GGLPIGAFGGR--------AEIMEQLAP 291 (432)
T ss_pred CCcceeeeccH--------HHHHhhhCC
Confidence 89999999873 346665543
No 312
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=99.17 E-value=1.3e-09 Score=104.62 Aligned_cols=171 Identities=16% Similarity=0.103 Sum_probs=120.0
Q ss_pred CCCCCCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEE
Q 022213 79 CYATNSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157 (301)
Q Consensus 79 ~Y~~~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~ 157 (301)
+.-.+.| +.+..+..|+.+. .....++++|+|.++.+++++++.+||+|+++..+|-+....+...|+.+++
T Consensus 189 dLl~~~G~i~eAe~~aA~~fg-------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVY 261 (713)
T PRK15399 189 SLLDHTGPHLEAEEYIARTFG-------AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIW 261 (713)
T ss_pred CCCCCChHHHHHHHHHHHHhC-------CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEE
Confidence 3333344 4567777777762 2346789999999999999999999999999999999988899999999999
Q ss_pred eecCCCCCC----CCCH-----HHHHhhccc-----CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeE-EEccCC
Q 022213 158 FDLLPERNW----EVDL-----DAVEALADK-----NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMV-VADEVY 222 (301)
Q Consensus 158 ~~~~~~~~~----~~~~-----~~l~~~~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~i-i~D~~y 222 (301)
+.... +.+ .++. +.+++.+.+ +++++++++|+ -.|.+++ +++|++.| |+.+ ++||+|
T Consensus 262 l~P~~-n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pT-YdGi~yd---~~~I~~~~---g~~~ilvDEAh 333 (713)
T PRK15399 262 LKPTR-NALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNST-YDGLLYN---TDWIKQTL---DVPSIHFDSAW 333 (713)
T ss_pred ecccc-cccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCC-CCceeeC---HHHHHHHh---CCCEEEEeccc
Confidence 87532 222 2344 788887754 23578888884 5899999 66677766 5555 699999
Q ss_pred cccc-cCCC--CCCCcccc-CCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213 223 GHLT-FGSI--PYTPMGLF-GSIVPVITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 223 ~~~~-~~~~--~~~~~~~~-~~~~~vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
..+. |.+. ...++... ..+.-++++.|.+|. ++++.-+.++-
T Consensus 334 gah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKt--L~alTQaS~iH 379 (713)
T PRK15399 334 VPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKM--LAAFSQASLIH 379 (713)
T ss_pred hhhhhcCcccCCcChhhCCCCCCeeeeeeeehhcc--ccccchheeee
Confidence 9653 3321 11222211 123335789999998 56666666543
No 313
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=99.16 E-value=5.5e-10 Score=107.21 Aligned_cols=171 Identities=16% Similarity=0.116 Sum_probs=122.4
Q ss_pred CCCCCCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEE
Q 022213 79 CYATNSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157 (301)
Q Consensus 79 ~Y~~~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~ 157 (301)
+.-.+.| +.+..+..|+.++ .....++++|+|.++.+++.+++.+||+|+++..+|-+....+...|+.+++
T Consensus 189 dLl~~~G~i~eAe~~AA~~fg-------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVY 261 (714)
T PRK15400 189 SLLDHSGPHKEAEEYIARVFN-------ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIY 261 (714)
T ss_pred CCCCCChHHHHHHHHHHHHhC-------CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEE
Confidence 3333344 4567777777762 2346789999999999999999999999999999999988899999999999
Q ss_pred eecCCCCCC----CCC-----HHHHHhhcccC-----ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc
Q 022213 158 FDLLPERNW----EVD-----LDAVEALADKN-----TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG 223 (301)
Q Consensus 158 ~~~~~~~~~----~~~-----~~~l~~~~~~~-----~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~ 223 (301)
+.... +.+ .++ .+.+++.+.+. ++.+++++|+ -.|.+++ +++|++.|+.++ |++||+|.
T Consensus 262 l~P~r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT-YdG~~yd---~~~I~~~~~~~~--ilvDEAwg 334 (714)
T PRK15400 262 FRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYN---TDFIKKTLDVKS--IHFDSAWV 334 (714)
T ss_pred ecccc-cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCC-CccEecC---HHHHHHHhCCCC--EEEEccch
Confidence 87543 222 234 78888877542 2368888884 5899999 777888887777 68999998
Q ss_pred ccc-cCCCC--CCCccccC-CCCCEEEEecCcccCCCCcceeEEEE
Q 022213 224 HLT-FGSIP--YTPMGLFG-SIVPVITLGSISKRWLVPGWRFGWLV 265 (301)
Q Consensus 224 ~~~-~~~~~--~~~~~~~~-~~~~vi~~~s~SK~~~~~G~rvG~~~ 265 (301)
.+. |.+.- ..++.... .++-++++.|.+|. ++++.-+.++
T Consensus 335 ah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKt--L~alTQaS~L 378 (714)
T PRK15400 335 PYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKL--LAAFSQASMI 378 (714)
T ss_pred hhhccCcccCCcChhhcCCCCCCceEEEEchhhc--ccchhHHhHH
Confidence 753 33211 12222111 12347999999998 5666666543
No 314
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.14 E-value=8.2e-09 Score=93.66 Aligned_cols=198 Identities=20% Similarity=0.185 Sum_probs=128.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-----CCCEEEcCCHHHHHHHHHHHhcC--------C
Q 022213 64 AEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-----ADDVYVTLGCKQAVEVILSVLAR--------P 130 (301)
Q Consensus 64 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~i~~t~g~~~al~~~~~~l~~--------~ 130 (301)
+.+.+...++. ....|.......++++.+.+|+.+.+|.+.. ...=++|+|+|+++..++.+..+ .
T Consensus 56 ~~~~l~~~~n~-n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~ 134 (373)
T PF00282_consen 56 LADLLASALNQ-NGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAK 134 (373)
T ss_dssp HHHHHHHHHT--BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcc-cccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhc
Confidence 44555555543 3334554445788999999999987775511 23468999999999888765532 1
Q ss_pred C-----C-EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---C--cc-EEEEcCCCCCcccCCC
Q 022213 131 G-----A-NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---N--TA-AMVIINPGNPCGNVFT 198 (301)
Q Consensus 131 g-----d-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~--~~-~v~l~~p~nptG~~~~ 198 (301)
| . .|++.+-+|.+....+..+|+.++.|+++. ++.+|.++|++.+.+ + +. .|+.+..+..||.+=+
T Consensus 135 ~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~ 212 (373)
T PF00282_consen 135 GVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP 212 (373)
T ss_dssp TTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S
T ss_pred ccccccccccccccccccHHHHhcceeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcccccccC
Confidence 2 2 466677789999999999999999998865 456999999988753 2 22 4555667888999866
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
+++|+++|+++++|+.+|.+|+...+--+.......--+..+-|.+ +++|.++ .-..+|+++..+.
T Consensus 213 ---l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~-d~HK~l~-~P~~~~~~l~r~~ 278 (373)
T PF00282_consen 213 ---LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITI-DPHKWLG-VPYGCGVLLVRDK 278 (373)
T ss_dssp ---HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEE-ETTTTTS--SSS-EEEEESSG
T ss_pred ---HHHHhhhccccceeeeeccccccccccccccccccccccccccccc-chhhhhc-CCccceeEEeecc
Confidence 8899999999999999999999843311111111111111122433 8999955 5568999988664
No 315
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.13 E-value=5.7e-09 Score=104.26 Aligned_cols=203 Identities=20% Similarity=0.187 Sum_probs=130.9
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC---C---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA---T---NSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~---~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
...+|.|+. .. .+.++.+...+ +..+....|. | .+|..++..++.+++.+-.| .+++.+..
T Consensus 498 ~~~~i~lGs-ct-----~~~~p~~~~~~---~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG----~d~~sl~~ 564 (954)
T PRK05367 498 DRSMIPLGS-CT-----MKLNAAAEMIP---ITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITG----YDAVSLQP 564 (954)
T ss_pred ccceeeCCc-CC-----CcCCHHHHHHH---HhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHC----CCCEEECc
Confidence 345777777 32 23334443332 2223333344 3 23556666777777766544 33666655
Q ss_pred -CHHHHHHHHHHHhc----CCCC----EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---Ccc
Q 022213 115 -GCKQAVEVILSVLA----RPGA----NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---NTA 182 (301)
Q Consensus 115 -g~~~al~~~~~~l~----~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~ 182 (301)
|++++....+.++. ++|| +|++++..|......+...|++++.++.+.. ..+|+++|++.+++ ++.
T Consensus 565 ~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~--G~iD~~~L~~~i~~~~~~la 642 (954)
T PRK05367 565 NAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDEN--GNIDLDDLRAKAEEHADNLA 642 (954)
T ss_pred cHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCC--CCcCHHHHHHHHhccCCCeE
Confidence 44454434333332 4565 6999999998777788899999999988643 45999999998865 356
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC----c
Q 022213 183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----G 258 (301)
Q Consensus 183 ~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G 258 (301)
++++++|++-.+...+ +++|+++|+++|+++++|.++......-. ....++-+ ++..|++|+|+.| |
T Consensus 643 ~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~~l~---~pg~~GAD---i~~~s~HK~f~~P~G~GG 713 (954)
T PRK05367 643 AIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNAQVGLA---RPGDIGAD---VSHLNLHKTFCIPHGGGG 713 (954)
T ss_pred EEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhhccCCC---ChhhcCCC---EEEecCcccCCCCcCCCC
Confidence 6778888876444466 89999999999999999999964322211 11223322 7888999997643 4
Q ss_pred ceeEEEEee
Q 022213 259 WRFGWLVTN 267 (301)
Q Consensus 259 ~rvG~~~~~ 267 (301)
-.+|.+.+.
T Consensus 714 Pg~G~l~vr 722 (954)
T PRK05367 714 PGVGPIGVK 722 (954)
T ss_pred CceEEEeec
Confidence 558888774
No 316
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.13 E-value=4.4e-09 Score=98.92 Aligned_cols=230 Identities=15% Similarity=0.106 Sum_probs=134.9
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC-CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN-SGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
..+++.+|||..|.-...- -..++.+.+++.++++.... +... .+..+....+++.+.+... ..+.+.+++++++
T Consensus 85 D~dG~~ylD~~sg~~~~~l-Gh~hp~v~~Av~~ql~~~~~--~~~~~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~SG 160 (504)
T PLN02760 85 DINGKKYLDALAGLWCTAL-GGSEPRLVAAATEQLNKLPF--YHSFWNRTTKPSLDLAKELLEMFT-ARKMGKVFFTNSG 160 (504)
T ss_pred ECCCCEEEEcCcCHHhccc-CCCCHHHHHHHHHHHhhccc--eecccccCcHHHHHHHHHHHhhcC-CCCCCEEEEeCCh
Confidence 4468899999887311111 13457889999999874321 1111 2334566667777654321 1223579999999
Q ss_pred HHHHHHHHHHhc-------CCC-CEEEEcCCCCcchHHHHHh-cCce------------EEEeecCCCCCC---C-----
Q 022213 117 KQAVEVILSVLA-------RPG-ANVLLPRPGWPYYEGIAQR-KQVE------------VRHFDLLPERNW---E----- 167 (301)
Q Consensus 117 ~~al~~~~~~l~-------~~g-d~Vl~~~p~~~~~~~~~~~-~g~~------------~~~~~~~~~~~~---~----- 167 (301)
++|.+.+++... .++ .+|+..+-+|++....... .|.. +..++......+ .
T Consensus 161 sEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 240 (504)
T PLN02760 161 SEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEE 240 (504)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHH
Confidence 999999999773 123 5788888888875332221 2211 111111100000 0
Q ss_pred ---CCHHHHHhhcc---cCccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 168 ---VDLDAVEALAD---KNTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 168 ---~~~~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
...+.+++.+. .+..+.++.-| ..-.|.+ .+.+.+++|.++|++||+++|.||++..+...+..+ ....++
T Consensus 241 ~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~-a~e~~g 319 (504)
T PLN02760 241 FSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMF-GCDKYN 319 (504)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhh-HHHhcC
Confidence 01234665553 12334455555 4445654 567899999999999999999999998764444322 223333
Q ss_pred CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213 240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
-..+++ +++|.++...+.+|.++++. ++++.+.
T Consensus 320 v~PDiv---tlgK~lggG~~PigAv~~~~--------~i~d~~~ 352 (504)
T PLN02760 320 IKPDLV---SLAKALSSAYMPIGAVLVSP--------EISDVIH 352 (504)
T ss_pred CCCcEE---EecccccCCccccceEeecH--------HHHhhhh
Confidence 333444 78999654335889988743 4666664
No 317
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.13 E-value=8.4e-09 Score=101.76 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=120.8
Q ss_pred CCCCCCC---CCCHHHHHHHHHHHhhhCCCCCCCCCEE-EcCCHHHHHHHHHHHhcC--------CCCEEEEcCCCCcch
Q 022213 77 FNCYATN---SGIPPARRAIADYLSRDLPYKLSADDVY-VTLGCKQAVEVILSVLAR--------PGANVLLPRPGWPYY 144 (301)
Q Consensus 77 ~~~Y~~~---~g~~~lr~~ia~~l~~~~~~~~~~~~i~-~t~g~~~al~~~~~~l~~--------~gd~Vl~~~p~~~~~ 144 (301)
++-|.|. +|..++..++.+|+.+-.|.+ ++- ..+++.++-...+.++.. ..++|+++...|...
T Consensus 516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd----~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtn 591 (939)
T TIGR00461 516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD----AISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTN 591 (939)
T ss_pred cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC----CcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcC
Confidence 4455543 456666666666666644433 333 344445444433433321 236799999999776
Q ss_pred HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccC
Q 022213 145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEV 221 (301)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~ 221 (301)
...++..|++++.++.+. +..+|+++|++.+++ ++++|++++|+| +|.+.+ .+++|+++|+++|.++++|.+
T Consensus 592 Pasa~~~G~~Vv~V~~d~--~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgA 666 (939)
T TIGR00461 592 PASAAMAGMQVVPVNCDQ--DGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGA 666 (939)
T ss_pred HHHHHHCCCEEEEeccCC--CCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEec
Confidence 777888999999998753 445999999999974 788899999999 777754 388999999999999999999
Q ss_pred CcccccCCCCCCCccccCCCCCEEEEecCcccCCC----CcceeEEEEeeC
Q 022213 222 YGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV----PGWRFGWLVTND 268 (301)
Q Consensus 222 y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~----~G~rvG~~~~~~ 268 (301)
+..-... ......++-+ ++.+|.+|+|+. .|-.+|.+.+..
T Consensus 667 q~~al~~---l~~Pg~~GaD---i~~~s~HKtf~~P~G~GGPg~G~i~vr~ 711 (939)
T TIGR00461 667 NMNAQVG---LTSPGDLGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKS 711 (939)
T ss_pred ChhhCCC---CCCccccCCC---EEEecCCccCCCCCCCCCCCeEEEEEhh
Confidence 9652211 1111233333 888899997663 466789998853
No 318
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.11 E-value=2.7e-09 Score=99.32 Aligned_cols=221 Identities=13% Similarity=0.080 Sum_probs=132.6
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.++|+..|--.. .--..++.+.+++.+++..... +.. ....+.+..+++.+.+..+ -..+.++++++
T Consensus 76 l~D~dG~~ylD~~~g~~~~-~lGH~~p~v~~Ai~~ql~~l~~--~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~S 149 (459)
T PRK11522 76 LVDTQGQEFIDCLGGFGIF-NVGHRNPVVVSAVQNQLAKQPL--HSQ-ELLDPLRAMLAKTLAALTP--GKLKYSFFCNS 149 (459)
T ss_pred EEECCCCEEEECCcCHHhh-hcCCCCHHHHHHHHHHHhhCcc--ccc-ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence 4445688899987772111 1123457888999998874321 111 1224556666666655322 12368999999
Q ss_pred HHHHHHHHHHHhcC----CC-CEEEEcCCCCcchHHHHHhc-CceEE---EeecCCCCC--CCCCHHHHHhhccc-----
Q 022213 116 CKQAVEVILSVLAR----PG-ANVLLPRPGWPYYEGIAQRK-QVEVR---HFDLLPERN--WEVDLDAVEALADK----- 179 (301)
Q Consensus 116 ~~~al~~~~~~l~~----~g-d~Vl~~~p~~~~~~~~~~~~-g~~~~---~~~~~~~~~--~~~~~~~l~~~~~~----- 179 (301)
+++|.+.+++.... +| .+|+...-+|++........ +.... +.+..+.-. --.|.+.+++.++.
T Consensus 150 GsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 229 (459)
T PRK11522 150 GTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTG 229 (459)
T ss_pred chHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccC
Confidence 99999999986642 23 46888888898764333322 21100 111111000 01266777776642
Q ss_pred CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC
Q 022213 180 NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP 257 (301)
Q Consensus 180 ~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~ 257 (301)
...+.++.-| ..-.|.. .+.+.++++.++|++||+++|+||++..+...+. ......++-..+++ +++|.++ .
T Consensus 230 ~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~gv~PDiv---t~gK~lg-g 304 (459)
T PRK11522 230 DDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHENVQPDIL---CLAKALG-G 304 (459)
T ss_pred CcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccch-hhhhhccCCCCCEE---Eechhhh-C
Confidence 2234445555 5555664 4677899999999999999999999987644443 22222333333444 7899965 4
Q ss_pred c-ceeEEEEee
Q 022213 258 G-WRFGWLVTN 267 (301)
Q Consensus 258 G-~rvG~~~~~ 267 (301)
| +.+|.+++.
T Consensus 305 G~~Pigav~~~ 315 (459)
T PRK11522 305 GVMPIGATIAT 315 (459)
T ss_pred CCccceeEEEc
Confidence 5 689999884
No 319
>PRK07482 hypothetical protein; Provisional
Probab=99.11 E-value=7.6e-09 Score=96.56 Aligned_cols=221 Identities=16% Similarity=0.122 Sum_probs=134.6
Q ss_pred ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC-CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN-SGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
...+++.+||+..|.-...- -..++.+.++++++++...+ +... ....+.+..+|+.+.+..+ .+.+.++++++
T Consensus 45 ~D~dG~~ylD~~sg~~~~~l-Gh~~p~v~~Av~~q~~~~~~--~~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~s 119 (461)
T PRK07482 45 TDAQGRRYIDAFAGLYCVNV-GYGRTEVAEAIAEQAKELAY--YHTYVGHGTEASITLSKRIIDRAP--AGMSKVYYGLS 119 (461)
T ss_pred EECCCCEEEEcccchhhhcC-CCCCHHHHHHHHHHHHhcCc--cccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCc
Confidence 34568899999888332211 13457889999999875321 1111 1224566667777765322 13468999999
Q ss_pred HHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCCCC---CC----
Q 022213 116 CKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPERN---WE---- 167 (301)
Q Consensus 116 ~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~---~~---- 167 (301)
+++|++.+++.... + ..+|+...-+|++.......... .+..++...... +.
T Consensus 120 GSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 199 (461)
T PRK07482 120 GSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEE 199 (461)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHH
Confidence 99999999997741 2 35788888889875332221110 111121111000 00
Q ss_pred ----CCHHHHHhhccc---CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213 168 ----VDLDAVEALADK---NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238 (301)
Q Consensus 168 ----~~~~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 238 (301)
.+++.+++.+.. +..+.++.-| ....|.. .+.+.+++|.++|++||+++|.||++..+...+.-+ ....+
T Consensus 200 ~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~-a~~~~ 278 (461)
T PRK07482 200 QFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMF-GSDHY 278 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchh-hHHhc
Confidence 134666766631 2334455555 4444665 577899999999999999999999999875544322 23334
Q ss_pred CCCCCEEEEecCcccCCCCcc-eeEEEEee
Q 022213 239 GSIVPVITLGSISKRWLVPGW-RFGWLVTN 267 (301)
Q Consensus 239 ~~~~~vi~~~s~SK~~~~~G~-rvG~~~~~ 267 (301)
+-..+++ +++|.++ .|+ .+|.+++.
T Consensus 279 gv~PDiv---~~gKgl~-gG~~Pi~av~~~ 304 (461)
T PRK07482 279 GIEPDLI---TVAKGLT-SAYAPLSGSIVG 304 (461)
T ss_pred CCCCCEE---EEccccc-cCccccceeeec
Confidence 4445566 5699954 464 88888874
No 320
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.11 E-value=5.5e-09 Score=96.77 Aligned_cols=223 Identities=16% Similarity=0.120 Sum_probs=135.3
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+||+..|--... .-...+.+.+++.+++.......+ ..+.+.++++.+.+..+ ..+.++++++++
T Consensus 49 D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~~~~~-----~~~~~~~la~~l~~~~p---~~~~v~f~~sGs 119 (428)
T PRK12389 49 DVDGNKYIDYLAAYGPII-TGHAHPHITKAITEAAENGVLYGT-----PTELEIEFAKMLKEAIP---SLEKVRFVNSGT 119 (428)
T ss_pred eCCCCEEEEccccccccc-cCCCCHHHHHHHHHHHHhCCccCC-----CCHHHHHHHHHHHHhCC---CCcEEEEeCCHH
Confidence 446888999977732111 123457788999999875432122 12445566666654322 246899999999
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-CceEEEe------ecC---CCCC---CCCCHHHHHhhccc--C
Q 022213 118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QVEVRHF------DLL---PERN---WEVDLDAVEALADK--N 180 (301)
Q Consensus 118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~------~~~---~~~~---~~~~~~~l~~~~~~--~ 180 (301)
+|.+.+++.... ...+|+...-+|++........ +...... ... ..+. --.|++.+++.+.. .
T Consensus 120 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 199 (428)
T PRK12389 120 EAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGD 199 (428)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCC
Confidence 999999987653 2367888888888764333222 2111000 000 0000 01267888877743 2
Q ss_pred ccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213 181 TAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG 258 (301)
Q Consensus 181 ~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G 258 (301)
..+.++.-| ..-.|.+. +.+.+++|.++|++||+++|.||++..+ ..+.. .....++-..+++ +++|.++ .|
T Consensus 200 ~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~-~a~~~~gv~PDiv---t~gK~lg-gG 273 (428)
T PRK12389 200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYG-GAQDLLGVEPDLT---ALGKIIG-GG 273 (428)
T ss_pred cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcc-hhhHHhCCCCCee---eechhhc-CC
Confidence 234444444 55567654 6789999999999999999999999987 32211 0111122233444 7899964 67
Q ss_pred ceeEEEEeeCCCCcccchhHHHHHH
Q 022213 259 WRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 259 ~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
+.+|.++++. ++++.+.
T Consensus 274 ~Pi~av~~~~--------~i~~~~~ 290 (428)
T PRK12389 274 LPIGAYGGRK--------DIMEQVA 290 (428)
T ss_pred CceeEEeEHH--------HHHhhhc
Confidence 9999997732 4666654
No 321
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.09 E-value=1.1e-08 Score=95.36 Aligned_cols=218 Identities=12% Similarity=0.026 Sum_probs=129.6
Q ss_pred CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
.+++.+||+..+... .+. ..+.+.+++.++++... +.......+.+.++++.+.+..+ ...+.++++++++
T Consensus 69 ~dG~~ylD~~g~~~~---~lGh~~p~v~~Ai~~ql~~~~---~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGs 140 (459)
T PRK06082 69 VDGKKYMDFHGNNVH---QLGYGHPHVIEKVKEQMAKLP---FSPRRFTNETAIECAEKLTEIAG--GELNRVLFAPGGT 140 (459)
T ss_pred CCCCEEEEcccHhhc---ccCCCCHHHHHHHHHHHHhCC---CccCccCCHHHHHHHHHHHHhCC--CCCCEEEECCCcH
Confidence 457788898633221 122 56788999999987422 22112234566667776655332 1236899999999
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHH-hcCce------------EEEeecCCCC--CCC-C------CHHHH
Q 022213 118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQ-RKQVE------------VRHFDLLPER--NWE-V------DLDAV 173 (301)
Q Consensus 118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~-~~g~~------------~~~~~~~~~~--~~~-~------~~~~l 173 (301)
+|++.+++.... ...+|+...-+|++...... ..+.. +..++..... .+. . +++.+
T Consensus 141 eAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (459)
T PRK06082 141 SAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYL 220 (459)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHH
Confidence 999999987642 23688888888887532222 11211 1112211000 010 0 12446
Q ss_pred Hhhccc-CccEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213 174 EALADK-NTAAMVIINP-GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS 251 (301)
Q Consensus 174 ~~~~~~-~~~~v~l~~p-~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S 251 (301)
++.++. ...+.++.-| .+..+...+.+.+++|.++|++||+++|.||+...+...+.- .....++-..+++ +++
T Consensus 221 ~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~-fa~e~~gv~PDiv---~~g 296 (459)
T PRK06082 221 EYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEW-FTHQAYGIEPDIL---CIG 296 (459)
T ss_pred HHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchh-hHhHhhCCCCCEE---Eec
Confidence 666642 2234445555 444455678889999999999999999999999986444432 1222333334445 489
Q ss_pred ccCCCCcceeEEEEeeC
Q 022213 252 KRWLVPGWRFGWLVTND 268 (301)
Q Consensus 252 K~~~~~G~rvG~~~~~~ 268 (301)
|.++...+.+|.+++++
T Consensus 297 Kgl~gG~~P~~av~~~~ 313 (459)
T PRK06082 297 KGLGGGLVPIAAMITKD 313 (459)
T ss_pred ccccCCCCcceEEEEcH
Confidence 99764335899998743
No 322
>PRK07678 aminotransferase; Validated
Probab=99.09 E-value=8.3e-09 Score=96.10 Aligned_cols=229 Identities=13% Similarity=0.066 Sum_probs=134.4
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|--... --..++.+.+++.++++.... +.. ....+....+++.+.+..+ ..+.++++++
T Consensus 41 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~~--~~~-~~~~~~~~~lae~l~~~~~---~~~~v~f~~s 113 (451)
T PRK07678 41 VTDIQGNRYLDGMSGLWCVN-VGYGRKELAEAAYEQLKTLSY--FPL-TQSHEPAIKLAEKLNEWLG---GEYVIFFSNS 113 (451)
T ss_pred EEeCCCCEEEEccccHHhhc-CCCCCHHHHHHHHHHHHhcCc--ccc-ccCCHHHHHHHHHHHHhCC---CCCEEEEeCC
Confidence 33456889999987722111 123457888999988874321 111 1123344556666654322 1358999999
Q ss_pred HHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC--CC-----
Q 022213 116 CKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN--WE----- 167 (301)
Q Consensus 116 ~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~----- 167 (301)
+++|.+.+++.... +| .+|+...-+|++....+... +. .+..++...... +.
T Consensus 114 GseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (451)
T PRK07678 114 GSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDI 193 (451)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHH
Confidence 99999999987642 23 57888888898764333221 11 112222110000 00
Q ss_pred CC---HHHHHhhcc---cCccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 168 VD---LDAVEALAD---KNTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 168 ~~---~~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
.+ ++.+++.+. ....+.++.-| ..-.|.+ .+.+.++++.++|++||+++|.||++..|...+. ......++
T Consensus 194 ~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~g 272 (451)
T PRK07678 194 YDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK-AFGFMNYG 272 (451)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch-hHHHHhcC
Confidence 01 123455453 12344455555 3335555 5678999999999999999999999988755443 22223344
Q ss_pred CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213 240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
-..+++ +++|.++..++.+|.+++++ ++.+.+.
T Consensus 273 v~PDiv---t~gK~lggG~~Pi~av~~~~--------~i~~~~~ 305 (451)
T PRK07678 273 VKPDII---TMAKGITSAYLPLSATAVKK--------EIYEAFK 305 (451)
T ss_pred CCCCEE---EeecccccCCcceeEEEEcH--------HHHHHHh
Confidence 344555 67999665447899998843 4666554
No 323
>PRK07046 aminotransferase; Validated
Probab=99.08 E-value=1.7e-08 Score=93.88 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=134.3
Q ss_pred cCCCCCeeeccCCC-CCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 38 KNDPRPVVPLGYGD-PTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 38 ~~~~~~~i~l~~g~-p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
..++..+|||..|. +... -..++.+.+++.++++......+ ..+...++|+.+.+.. ..+.+.+++++
T Consensus 71 D~DG~~yiD~~~g~g~~~l--Gh~~p~i~~Av~~q~~~~~~~~~-----~~~~~~~lAe~l~~~~----~~~~v~F~nSG 139 (453)
T PRK07046 71 DVDGHRYDDFCLGDTGAMF--GHSPAPVARALAEQARRGLTTML-----PSEDAAWVGEELARRF----GLPYWQVATTA 139 (453)
T ss_pred eCCCCEEEEeccccccccc--CCCCHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHHh----CCCEEEEECCH
Confidence 44678899987663 2211 23457889999999875432222 2355566666665532 35789999999
Q ss_pred HHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHH-h-cCceE----EE--ee--cCC---CCCCCCCHHHHHhhcccCc
Q 022213 117 KQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQ-R-KQVEV----RH--FD--LLP---ERNWEVDLDAVEALADKNT 181 (301)
Q Consensus 117 ~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~-~-~g~~~----~~--~~--~~~---~~~~~~~~~~l~~~~~~~~ 181 (301)
+||.+.+++.... ..++|+...-+|+++..... . .+... .. ++ ... .-.| .|++.+++.+....
T Consensus 140 tEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~~ 218 (453)
T PRK07046 140 TDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALADGD 218 (453)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCCCC
Confidence 9999999987752 34789988888988632211 1 00000 00 00 000 0001 37888988885444
Q ss_pred cEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcc
Q 022213 182 AAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW 259 (301)
Q Consensus 182 ~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~ 259 (301)
.+.++.-| ....|. ..+.+.++++.++|++||+++|.||+.. +..+-.... ..++-..+++ +++|.++ .|+
T Consensus 219 vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~~--~~~gv~PDi~---t~gK~lg-gG~ 291 (453)
T PRK07046 219 VAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGYT--RAHGLEPDFL---VVGKPIA-GGV 291 (453)
T ss_pred eEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcchh--HHhCCCccce---eehhhhc-CCC
Confidence 45556666 333344 4556799999999999999999999986 322111111 1222233444 6899965 589
Q ss_pred eeEEEEeeCCCCcccchhHHHHHH
Q 022213 260 RFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 260 rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
.+|.++++. ++++.+.
T Consensus 292 Pi~av~g~~--------~i~~~~~ 307 (453)
T PRK07046 292 PCAVYGFSA--------ELAERAQ 307 (453)
T ss_pred cceeeeehH--------HHHHHHh
Confidence 999988743 4666664
No 324
>PRK06105 aminotransferase; Provisional
Probab=99.08 E-value=1.6e-08 Score=94.40 Aligned_cols=232 Identities=16% Similarity=0.114 Sum_probs=136.6
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|.-... .-..++.+.+++.+++++.... ........+.+.++++.+.+..+ .+-++++++++
T Consensus 42 l~D~dG~~ylD~~~g~~~~~-lGh~~p~i~~Ai~~q~~~~~~~-~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~S 117 (460)
T PRK06105 42 VYDDAGKRYIEGMAGLWSVA-LGFSEQRLVEAAARQMKKLPFY-HTFSHKSHGPVIDLAEKLVAMAP--VPMSKVFFTNS 117 (460)
T ss_pred EEECCCCEEEEcchhHHhcc-CCCCCHHHHHHHHHHHHhCCCe-ecccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence 33456889999988732111 1234578889999998743210 01111234555566666655332 12368999999
Q ss_pred HHHHHHHHHHHhc------C-C-CCEEEEcCCCCcchHHHHHhc-Cce------------EEEeecCCCCCCC-------
Q 022213 116 CKQAVEVILSVLA------R-P-GANVLLPRPGWPYYEGIAQRK-QVE------------VRHFDLLPERNWE------- 167 (301)
Q Consensus 116 ~~~al~~~~~~l~------~-~-gd~Vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~~------- 167 (301)
+++|.+.+++... . + ..+|+...-+|++........ +.. +..++......+.
T Consensus 118 GseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 197 (460)
T PRK06105 118 GSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEE 197 (460)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChH
Confidence 9999999999753 1 2 357888888888754322111 111 1111111000000
Q ss_pred ----CCHHHHHhhcc---cCccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213 168 ----VDLDAVEALAD---KNTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238 (301)
Q Consensus 168 ----~~~~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 238 (301)
...+++++.+. .+..+.++.-| ..-.|.. .+.+.++++.++|++||+++|.||++..+...+.-+ ....+
T Consensus 198 ~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f-~~~~~ 276 (460)
T PRK06105 198 AFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMF-GCETF 276 (460)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhh-hHHhc
Confidence 01345666553 12334455555 5455665 578899999999999999999999998765444322 23333
Q ss_pred CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213 239 GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
+-..+++ +++|.++...+.+|.+++++ ++.+.+.
T Consensus 277 ~v~PDi~---~~gK~lggG~~P~~av~~~~--------~i~~~~~ 310 (460)
T PRK06105 277 GIKPDIL---VMSKQLSSSYQPLSAVLMNE--------KVYDPIA 310 (460)
T ss_pred CCCCCee---eeecccccCcccceEEEEcH--------HHHHHHh
Confidence 3334445 78999764336899998843 4666554
No 325
>PRK05965 hypothetical protein; Provisional
Probab=99.08 E-value=7.6e-09 Score=96.49 Aligned_cols=223 Identities=17% Similarity=0.144 Sum_probs=133.9
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC-CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN-SGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
+...+++.+||+..|.-... --...+.+.+++.++++.... .... ....+.+..+|+.+.+..+ -+.+.+++++
T Consensus 40 l~D~dG~~ylD~~~g~~~~~-lGh~~p~i~~Ai~~q~~~~~~--~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~ 114 (459)
T PRK05965 40 LTDASGHQLLDAFAGLWCVN-VGYGQESIVEAAAEQMRELPY--ATGYFHFGSEPAIRLAAKLAERAP--GSLNHVYFTL 114 (459)
T ss_pred EEECCCCEEEECcccHHhcc-CCCCCHHHHHHHHHHHHhcCC--cccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeC
Confidence 34456889999987732111 112357888999999874321 1110 1123445556666655322 1346899999
Q ss_pred CHHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCC--CCCCCC--
Q 022213 115 GCKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPE--RNWEVD-- 169 (301)
Q Consensus 115 g~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~--~~~~~~-- 169 (301)
++++|++.+++.... + ..+|+...-+|++........ +. ....++.... ..+..+
T Consensus 115 sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (459)
T PRK05965 115 GGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQ 194 (459)
T ss_pred ChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChH
Confidence 999999999987542 2 357998888998764322111 11 0112221110 001112
Q ss_pred ------HHHHHhhccc---CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213 170 ------LDAVEALADK---NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238 (301)
Q Consensus 170 ------~~~l~~~~~~---~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 238 (301)
++.+++.+.. +..+.++.-| +...|. ..+.+.++++.++|++||+++|.||+...+...+. ......+
T Consensus 195 ~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~ 273 (459)
T PRK05965 195 AIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP-LFACEAE 273 (459)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch-hhhHhhc
Confidence 2456666642 2334445555 445566 46778999999999999999999999998765543 2233334
Q ss_pred CCCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213 239 GSIVPVITLGSISKRWLVPG-WRFGWLVTND 268 (301)
Q Consensus 239 ~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~ 268 (301)
+-..+++ +++|.++ .| +.+|.+++++
T Consensus 274 gv~PDiv---~~gKgl~-gG~~Pi~av~~~~ 300 (459)
T PRK05965 274 GVVPDLM---TVAKGLT-SGYVPMGAVLMSD 300 (459)
T ss_pred CCCCCeE---Eechhhc-cCCcceeEEEEcH
Confidence 4445566 6699964 57 5999999843
No 326
>PRK12403 putative aminotransferase; Provisional
Probab=99.07 E-value=2.6e-08 Score=92.95 Aligned_cols=222 Identities=19% Similarity=0.137 Sum_probs=125.9
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC-CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN-SGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
+...+++.+||+..|--...-.. ..+.+.+++.++++.-.. +... .+..+....+++.+.+..+ ...+.+++++
T Consensus 48 l~D~dG~~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~~--~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~ 122 (460)
T PRK12403 48 LWDNDGKRYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLPY--YNMFFHTTHPAVIELSELLFSLLP--GHYSHAIYTN 122 (460)
T ss_pred EEeCCCCEEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCCC--eecccccCCHHHHHHHHHHHHhCC--CCcCEEEEeC
Confidence 33456888999877621111112 457889999999874221 1111 1234555556666654322 1236899999
Q ss_pred CHHHHHHHHHHHhc-------CCCC-EEEEcCCCCcchHHHH-HhcCce-----------EEEeecCCC--CCCCC----
Q 022213 115 GCKQAVEVILSVLA-------RPGA-NVLLPRPGWPYYEGIA-QRKQVE-----------VRHFDLLPE--RNWEV---- 168 (301)
Q Consensus 115 g~~~al~~~~~~l~-------~~gd-~Vl~~~p~~~~~~~~~-~~~g~~-----------~~~~~~~~~--~~~~~---- 168 (301)
++++|++.+++... ++++ .|+...-+|++..... ...+.+ +..++.... ..+..
T Consensus 123 SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 202 (460)
T PRK12403 123 SGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAE 202 (460)
T ss_pred CcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHH
Confidence 99999999999874 2333 3555566777653222 211211 122221100 00011
Q ss_pred ----CHHHHHhhcc-c--CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 169 ----DLDAVEALAD-K--NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 169 ----~~~~l~~~~~-~--~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
+.+.+++.+. . ...+.++.-| ..-.|.+ .+.+.+++|.++|++||+++|.||++..+...+.-+ ....++
T Consensus 203 ~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~-a~e~~g 281 (460)
T PRK12403 203 FGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF-AHEHFG 281 (460)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-hhhhcC
Confidence 1244544442 1 2334445555 4445664 567899999999999999999999998765444322 222333
Q ss_pred CCCCEEEEecCcccCCCCc-ceeEEEEee
Q 022213 240 SIVPVITLGSISKRWLVPG-WRFGWLVTN 267 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~ 267 (301)
-..+++ +++|.++ .| +.+|.++++
T Consensus 282 v~PDiv---~~gK~lg-gG~~Piga~v~~ 306 (460)
T PRK12403 282 FEPDTL---SIAKGLT-SGYVPMGGLVLS 306 (460)
T ss_pred CCCCeE---EEccccc-ccccceEEEEEC
Confidence 333445 4899965 46 488988874
No 327
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.07 E-value=3.1e-09 Score=98.42 Aligned_cols=168 Identities=17% Similarity=0.107 Sum_probs=124.5
Q ss_pred CCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC
Q 022213 83 NSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL 161 (301)
Q Consensus 83 ~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 161 (301)
+.| +.+..+..|+.+. .....++++|+|.++..++++++.+||.|+++..+|-+....+...|+.++++...
T Consensus 68 p~G~i~eAqe~aA~~fg-------Ad~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~ 140 (557)
T COG1982 68 PEGPIKEAQELAARVFG-------ADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPS 140 (557)
T ss_pred CCccHHHHHHHHHHHhC-------CCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCC
Confidence 344 4567777777762 23478999999999999999999999999999999999888889999999988754
Q ss_pred CCCC----CCCCHHHHHhhcccC--c-cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC
Q 022213 162 PERN----WEVDLDAVEALADKN--T-AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP 234 (301)
Q Consensus 162 ~~~~----~~~~~~~l~~~~~~~--~-~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~ 234 (301)
.... .+++.+.+++.+.++ . +.+++++|+. .|++++ +++|++.+++.++++.+|+++....-... ..+
T Consensus 141 ~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~~-~l~ 215 (557)
T COG1982 141 RNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFSP-MLP 215 (557)
T ss_pred CCccccccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCcccccccc-cCc
Confidence 3332 357899998876543 3 5677777764 799999 88888888899999999999986432211 111
Q ss_pred ccccCCCCCEEEEecCcccCCCCcceeEEEE
Q 022213 235 MGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265 (301)
Q Consensus 235 ~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~ 265 (301)
. .-...+.+++..|.+|. ++++.-+.++
T Consensus 216 ~-~~~~~~~~~~tqS~HK~--l~alSQaS~i 243 (557)
T COG1982 216 E-SALNGGADFVTQSTHKL--LAALSQASMI 243 (557)
T ss_pred c-hhhhcCceEEEechhhh--hhhhhhhHHH
Confidence 1 11123457999999998 4555555543
No 328
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.06 E-value=2.2e-08 Score=92.92 Aligned_cols=222 Identities=17% Similarity=0.140 Sum_probs=129.4
Q ss_pred ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
...+++.++|+..|.-.. .--..++.+.+++++++++-.. ........+.+..+++.+.+..+ -..+.+++++++
T Consensus 41 ~D~dG~~ylD~~~g~~~~-~lGh~~p~v~~ai~~ql~~l~~--~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sG 115 (442)
T PRK13360 41 TTHDGRRVLDGTAGLWCV-NAGHGRPEIVEAVRAQAGELDY--APAFQMGHPKAFELANRIAEIAP--GGLNHVFFTNSG 115 (442)
T ss_pred EeCCCCEEEECchhHHHh-ccCCCCHHHHHHHHHHHHhCCC--cccCCcCCHHHHHHHHHHHHhCC--CCCCEEEEeCCc
Confidence 344688899997772111 1123457888999998874211 11111123445566666654322 123589999999
Q ss_pred HHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHH-hcC------------ceEEEeecCC--C-CCCCC----
Q 022213 117 KQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQ-RKQ------------VEVRHFDLLP--E-RNWEV---- 168 (301)
Q Consensus 117 ~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~-~~g------------~~~~~~~~~~--~-~~~~~---- 168 (301)
++|++.+++.... + ..+|+...-+|++...... ..| ..+..+|... . ..+..
T Consensus 116 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 195 (442)
T PRK13360 116 SESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPE 195 (442)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHH
Confidence 9999999886542 2 2579988888987532211 111 1122222211 0 00111
Q ss_pred ----CHHHHHhhccc---CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 169 ----DLDAVEALADK---NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 169 ----~~~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
..+.+++.+.. ...+.++.-| ....|.. .+.+.+++|.++|++||+++|+||++..+...+..+ ....++
T Consensus 196 ~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~g 274 (442)
T PRK13360 196 HGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPF-AAQYFG 274 (442)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-hhhhcC
Confidence 13466666642 2334455555 4455665 567889999999999999999999997764433322 122233
Q ss_pred CCCCEEEEecCcccCCCCcceeEEEEee
Q 022213 240 SIVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
-..+++ +++|.++...+.+|.++++
T Consensus 275 v~PDiv---t~gK~l~gG~~P~gav~~~ 299 (442)
T PRK13360 275 VTPDLL---TCAKGLTNGAIPMGAVFVS 299 (442)
T ss_pred CCCcee---eeeeccccCccceEEEEEc
Confidence 233344 7899975433788998874
No 329
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.05 E-value=2.4e-08 Score=93.04 Aligned_cols=223 Identities=14% Similarity=0.062 Sum_probs=133.9
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|--.. .--..++.+.+++.++++.... ........+.+..+++.+.+..+ ..-+.++++++
T Consensus 48 l~D~dG~~ylD~~~g~~~~-~lGh~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~s 122 (453)
T PRK06943 48 LYDRDGRRYLDAISSWWVN-LFGHANPRINAALKDQLDTLEH--AMLAGCTHEPAIELAERLAALTG--GTLGHAFFASD 122 (453)
T ss_pred EEeCCCCEEEEcchHHHHh-cCCCCCHHHHHHHHHHHHhcCC--ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence 3345688899997772111 0122457888999998874321 11111123455567776655322 12258999999
Q ss_pred HHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC--CC-----
Q 022213 116 CKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN--WE----- 167 (301)
Q Consensus 116 ~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~----- 167 (301)
+++|.+.+++...+ + ..+|+...-+|++........ +. .+..++.....+ +.
T Consensus 123 GseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 202 (453)
T PRK06943 123 GASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAAD 202 (453)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHH
Confidence 99999999997631 2 367998888898754222211 10 112222211000 00
Q ss_pred ---CCHHHHHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 168 ---VDLDAVEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 168 ---~~~~~l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
-+++.+++.++. ...+.++.-| +...|. ..+.+.++++.++|++||+++|.||++..+...+. ......++
T Consensus 203 ~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~-~fa~~~~g 281 (453)
T PRK06943 203 VAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT-FFACEQAG 281 (453)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcc-hhHHHhCC
Confidence 124566666642 2334445555 455666 46788999999999999999999999998755443 22233344
Q ss_pred CCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213 240 SIVPVITLGSISKRWLVPG-WRFGWLVTND 268 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~ 268 (301)
-..+++ +++|.++ .| +.+|.+++++
T Consensus 282 v~PDiv---t~gKgl~-gG~~Pi~av~~~~ 307 (453)
T PRK06943 282 VWPDFL---CLSKGIS-GGYLPLSLVLSRD 307 (453)
T ss_pred CCCCeE---eeehhhc-cCcccceEEEEcH
Confidence 445566 5599965 57 5899998843
No 330
>PRK06062 hypothetical protein; Provisional
Probab=99.05 E-value=2e-08 Score=93.56 Aligned_cols=229 Identities=17% Similarity=0.131 Sum_probs=136.5
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|.-.. .--...+.+.+++.+++..... +.. ....+.+..+++.+.+..+ -..+.++++++
T Consensus 47 l~D~dG~~ylD~~~g~~~~-~lGh~~p~v~~Ai~~q~~~~~~--~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~S 120 (451)
T PRK06062 47 VWDYEGRRYLDFSSQLVNT-NIGHQHPKVVAAIQEQAARLCT--VAP-AHANDARSEAARLIAERAP--GDLSKVFFTNG 120 (451)
T ss_pred EEECCCCEEEEcccCHHhh-cCCCCCHHHHHHHHHHHHhcCC--cCC-ccCCHHHHHHHHHHHHhCC--CCCCEEEEcCC
Confidence 3345688999998773211 1122456788999988874321 122 2234556666776655322 12468999999
Q ss_pred HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cce-----------EEEeecCCCC--CCC--CC-------H
Q 022213 116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QVE-----------VRHFDLLPER--NWE--VD-------L 170 (301)
Q Consensus 116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~~-----------~~~~~~~~~~--~~~--~~-------~ 170 (301)
+++|.+.+++.... ...+|+...-+|++........ +.. +..++..... .|. .+ +
T Consensus 121 GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 200 (451)
T PRK06062 121 GADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERAL 200 (451)
T ss_pred hHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHH
Confidence 99999999987642 2367888888888764333221 110 1111111000 010 12 4
Q ss_pred HHHHhhccc---CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213 171 DAVEALADK---NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI 245 (301)
Q Consensus 171 ~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi 245 (301)
+.+++.++. +..+.++.-| ..-.|.+ .+.+.+++|.++|++||+++|+||++..+...+.- .....++-..+++
T Consensus 201 ~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~-~a~~~~gv~PDi~ 279 (451)
T PRK06062 201 AHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKW-FAIEHFGVVPDLI 279 (451)
T ss_pred HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHH-HHHHhcCCCCCee
Confidence 566766642 2234445555 4445665 46789999999999999999999999986443321 1122233333444
Q ss_pred EEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHH
Q 022213 246 TLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 246 ~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
+++|.++ .| +.+|.+++++ ++++.+.
T Consensus 280 ---t~gK~lg-gG~~Pigav~~~~--------~i~~~~~ 306 (451)
T PRK06062 280 ---TFAKGVN-SGYVPLGGVAISE--------AIAATFA 306 (451)
T ss_pred ---eechhhh-cCCcCcEEEEEcH--------HHHHHhc
Confidence 7899965 46 4899988743 3666554
No 331
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.05 E-value=1.5e-08 Score=94.35 Aligned_cols=223 Identities=14% Similarity=0.115 Sum_probs=129.6
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|.-.. ..-..++.+.+++.++++..... .......+.+.++++.+.+..+ ...+.++++++
T Consensus 47 l~D~dG~~ylD~~~g~~~~-~lGh~~p~i~~Ai~~ql~~~~~~--~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~S 121 (457)
T PRK05639 47 IEDVDGNVFIDFLAGAAAA-STGYSHPKLVKAVQEQVALIQHS--MIGYTHSERAIRVAEKLAEISP--IENPKVLFGLS 121 (457)
T ss_pred EEeCCCCEEEECCcCHHhh-ccCCCCHHHHHHHHHHHHhcccc--ccCccCCHHHHHHHHHHHhhCC--CCcCEEEEeCc
Confidence 3345688899998773211 11234568889999988742211 1111112444456666654222 22368999999
Q ss_pred HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCC--CC----CCH---
Q 022213 116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERN--WE----VDL--- 170 (301)
Q Consensus 116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~--~~----~~~--- 170 (301)
+++|.+.+++.... ...+|+...-+|++........ +. .+..+|...... +. .+.
T Consensus 122 GsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 201 (457)
T PRK05639 122 GSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDEL 201 (457)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHH
Confidence 99999999987752 3467888888888754322211 10 122333221100 00 022
Q ss_pred -----HHHHhhc-----ccCccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213 171 -----DAVEALA-----DKNTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238 (301)
Q Consensus 171 -----~~l~~~~-----~~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 238 (301)
+.+++.+ ..+..+.++.-| ....|. ..+.+.+++|.++|++||+++|.||++..+...+..+ ....+
T Consensus 202 ~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~ 280 (457)
T PRK05639 202 INRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWF-ASEWF 280 (457)
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHH-HHHhc
Confidence 2344433 122344455555 444566 4568899999999999999999999998764444321 12223
Q ss_pred CCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 239 GSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
+-..+++. ++|.++ .|+.+|.++++.
T Consensus 281 gv~PDiv~---~gK~l~-gG~pi~av~~~~ 306 (457)
T PRK05639 281 EVKPDLII---FGKGVA-SGMGLSGVIGRK 306 (457)
T ss_pred CCCCCEEE---echhhc-CCCcceeEEehH
Confidence 33334553 799965 578899998743
No 332
>PRK06149 hypothetical protein; Provisional
Probab=99.04 E-value=1.2e-08 Score=103.36 Aligned_cols=224 Identities=15% Similarity=0.088 Sum_probs=131.9
Q ss_pred cCCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
..+++.++++..|.. .++ ..+.+.+++.+++..... .. ....+...++++.+.+... -..+.+++++++
T Consensus 581 D~dG~~ylD~~~~~~----~lGh~hp~v~~Ai~~q~~~l~~---~~-~~~~~~~~elae~L~~~~p--~~~~~v~f~~SG 650 (972)
T PRK06149 581 DMAGRSYLDMVNNVT----VLGHGHPRLAAAAARQWSLLNT---NS-RFHYAAVAEFSERLAALAP--DGLDTVFLVNSG 650 (972)
T ss_pred eCCCCEEEECCCCcc----ccCCCCHHHHHHHHHHHHhccc---cc-cccCHHHHHHHHHHHHhCC--CCcCEEEEeCCc
Confidence 345788999987642 233 567889999988874321 11 1122344555555544221 123689999999
Q ss_pred HHHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhc-C-----c--------eEEEeecCCC--CCCC-CC-----HHH
Q 022213 117 KQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRK-Q-----V--------EVRHFDLLPE--RNWE-VD-----LDA 172 (301)
Q Consensus 117 ~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~-g-----~--------~~~~~~~~~~--~~~~-~~-----~~~ 172 (301)
++|.+.+++... ....+|+...-+|++........ + . .+..++.... ..|. .+ .+.
T Consensus 651 sEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~ 730 (972)
T PRK06149 651 SEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRD 730 (972)
T ss_pred hHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHH
Confidence 999999998443 12357888888888643222111 0 0 0112221110 0111 11 133
Q ss_pred HHhhcc-----cCccEEEEcCC--CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213 173 VEALAD-----KNTAAMVIINP--GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI 245 (301)
Q Consensus 173 l~~~~~-----~~~~~v~l~~p--~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi 245 (301)
++..++ .+..+.++.-| .+-.....+.+.++++.++|++||+++|.||++..+...+..+..+..++-..+++
T Consensus 731 ~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv 810 (972)
T PRK06149 731 VVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII 810 (972)
T ss_pred HHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEE
Confidence 333221 12344455555 33334567788999999999999999999999977655554333333343334555
Q ss_pred EEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213 246 TLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 246 ~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
+++|.++ .|+.+|.++++. ++++.+.
T Consensus 811 ---t~gK~lg-~G~Pl~av~~~~--------~i~~~~~ 836 (972)
T PRK06149 811 ---TMAKGMG-NGHPLGAVITRR--------EIAEALE 836 (972)
T ss_pred ---Eeccccc-CCeeeEEEEEcH--------HHHhhhc
Confidence 7899965 679999999843 4666654
No 333
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.04 E-value=1.2e-08 Score=94.42 Aligned_cols=226 Identities=13% Similarity=0.073 Sum_probs=133.8
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|.-.. ..-...+.+.+++.+++.... .+.. ..+.+.++++.+.+..+ ...+.++++++
T Consensus 47 l~D~dG~~yiD~~~g~~~~-~lGh~~p~v~~ai~~q~~~~~--~~~~---~~~~~~~la~~L~~~~~--~~~~~v~f~~S 118 (433)
T PRK00615 47 FIDSLGKTFIDFCGSWGSL-IHGHSHPKICDAIQQGAERGT--SYGL---TSEQEILFAEELFSYLG--LEDHKIRFVSS 118 (433)
T ss_pred EEECCCCEEEEcccchhcc-ccCCCCHHHHHHHHHHHHhCC--CCCC---CCHHHHHHHHHHHHhCC--CCcCEEEEeCc
Confidence 3445688999997773221 112345788899999887533 2221 12344556666554322 12368999999
Q ss_pred HHHHHHHHHHHhcC-CC-CEEEEcCCCCcchHHH---H-HhcCce---E-EEeecCC--CCC---CCCCHHHHHhhccc-
Q 022213 116 CKQAVEVILSVLAR-PG-ANVLLPRPGWPYYEGI---A-QRKQVE---V-RHFDLLP--ERN---WEVDLDAVEALADK- 179 (301)
Q Consensus 116 ~~~al~~~~~~l~~-~g-d~Vl~~~p~~~~~~~~---~-~~~g~~---~-~~~~~~~--~~~---~~~~~~~l~~~~~~- 179 (301)
++||.+.+++.... .| .+|+...-+|+++... . ...+.. . ......+ ... --.|.+.+++.+..
T Consensus 119 GsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 198 (433)
T PRK00615 119 GTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSL 198 (433)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhc
Confidence 99999999987753 23 6788888888885411 1 111100 0 0000000 000 01267888877743
Q ss_pred -CccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC
Q 022213 180 -NTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV 256 (301)
Q Consensus 180 -~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~ 256 (301)
...+.++..| ....|... +.+.+++|.++|++||+++|+||++..+ ..+... ....++-..+++ +++|.++
T Consensus 199 ~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~g-a~~~~gv~PDi~---~~gK~lg- 272 (433)
T PRK00615 199 GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGG-AAAIYHVKPDIT---VYGKILG- 272 (433)
T ss_pred CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhH-HHHhcCCCCCeE---EEccccc-
Confidence 2234455555 44456655 5678999999999999999999999776 333211 112222223344 5899965
Q ss_pred CcceeEEEEeeCCCCcccchhHHHHHH
Q 022213 257 PGWRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 257 ~G~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
.|+.+|+++++. ++++.+.
T Consensus 273 gG~p~~av~~~~--------~i~~~~~ 291 (433)
T PRK00615 273 GGLPAAAVVAHK--------SIMDHLA 291 (433)
T ss_pred CCcceeeeeecH--------HHHhhhc
Confidence 567889998743 4666664
No 334
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.03 E-value=3.1e-08 Score=92.09 Aligned_cols=223 Identities=17% Similarity=0.145 Sum_probs=128.2
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|.-.. .--..++.+.++++++++.-. .+.......+....+++.+.+..+ ...+.++++++
T Consensus 43 l~D~dG~~ylD~~~g~~~~-~lGh~~p~v~~ai~~ql~~l~--~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~s 117 (445)
T PRK09221 43 YTDADGRKILDGTAGLWCC-NAGHGRPEIVEAVARQAATLD--YAPAFQMGHPLAFELAERLAELAP--GGLDHVFFTNS 117 (445)
T ss_pred EEeCCCCEEEEccccHhhc-cCCCCCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence 3345688999998772211 112245778889998887421 111111123444556666654322 12368999999
Q ss_pred HHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-C------------ceEEEeecCC---CCCCCC---
Q 022213 116 CKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-Q------------VEVRHFDLLP---ERNWEV--- 168 (301)
Q Consensus 116 ~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g------------~~~~~~~~~~---~~~~~~--- 168 (301)
+++|.+.+++.... + ..+|+...-+|++........ + ..+..++... ...+..
T Consensus 118 GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (445)
T PRK09221 118 GSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQP 197 (445)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChH
Confidence 99999999986542 1 257888888888753222111 1 0112222210 000110
Q ss_pred -----CHHHHHhhccc---CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213 169 -----DLDAVEALADK---NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238 (301)
Q Consensus 169 -----~~~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 238 (301)
..+.+++.++. +..+.++.-| ....|.. .+.+.+++|.++|++||+++|+||++..+...+..+ ....+
T Consensus 198 ~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-~~~~~ 276 (445)
T PRK09221 198 EHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAF-AAERF 276 (445)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhh-HHHhc
Confidence 13456665542 2334444444 5556774 466789999999999999999999998764433321 12223
Q ss_pred CCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213 239 GSIVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+-..+++ +++|.++...+.+|.++++
T Consensus 277 gv~PDi~---~~gK~l~gG~~Pi~av~~~ 302 (445)
T PRK09221 277 GVTPDII---TFAKGLTNGAIPMGAVIAS 302 (445)
T ss_pred CCCCCEE---EeccccccCcccceeeEEc
Confidence 3223444 7899965433678998874
No 335
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.02 E-value=4.6e-09 Score=94.94 Aligned_cols=178 Identities=13% Similarity=0.040 Sum_probs=116.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCCc
Q 022213 64 AEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRPGWP 142 (301)
Q Consensus 64 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~ 142 (301)
..+++.+.+-. ..++.+ -..++.+.+.+.+++.++.+.+.+-++++.|+|.++++++..++ ++||+|++.. .|.
T Consensus 19 ~~~~~~~~~~~--~~HRs~--~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG 93 (374)
T TIGR01365 19 SIEELKNAPLG--RSHRSK--LGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFG 93 (374)
T ss_pred hHHHHhhhhcc--cCcCCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHH
Confidence 55666544321 112332 23455555555555555532222236779999999999999999 5899999865 444
Q ss_pred c-hH-HHHHhcCc-eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEc
Q 022213 143 Y-YE-GIAQRKQV-EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVAD 219 (301)
Q Consensus 143 ~-~~-~~~~~~g~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D 219 (301)
. +. .+++.+|+ ++..+... .+..+++++++. + +.+++++....||+..+ +++++..+ ++.++|+|
T Consensus 94 ~r~~~eia~~~g~~~v~~l~~~--~g~~~~~~~ve~--~---~~v~~vhnETSTGv~np---v~~i~~~~--~~~lliVD 161 (374)
T TIGR01365 94 KGWVTDVTKQLKLPDVRVLEAE--YGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVP---NGDFIPAD--REGLTICD 161 (374)
T ss_pred HHHHHHHHHhcCCCCcEEEcCC--CCCCCCHHHcCC--C---CCEEEecCCCchheecc---cccccccc--CCCcEEEE
Confidence 2 34 77888999 47777643 344588888873 1 23678888889999999 45554322 48999999
Q ss_pred cCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 220 EVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 220 ~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
.+.+... .+..+..++ +++.|..|++++|+ .+|+++++.
T Consensus 162 avSs~g~----~~l~~d~iD-----v~~tgsQK~L~~pp-Gls~v~vs~ 200 (374)
T TIGR01365 162 ATSAAFA----QDLDYHKLD-----VVTFSWQKVLGGEG-AHGMLILSP 200 (374)
T ss_pred ccchhcC----CCCChhHCc-----EEEEechhccCCCC-ceEEEEECH
Confidence 9988632 233333222 88899999998854 266777654
No 336
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.01 E-value=2.4e-09 Score=96.93 Aligned_cols=180 Identities=12% Similarity=0.051 Sum_probs=111.7
Q ss_pred CChHHHHHHHHHHHhcCC-CCCCCC--CCCCHHHHHHHHHHHhhhCCCCCC-CCCEEEc-CCHHHHHHHHHHHhcCCCCE
Q 022213 59 RTAVEAEDAIVDAVRSGK-FNCYAT--NSGIPPARRAIADYLSRDLPYKLS-ADDVYVT-LGCKQAVEVILSVLARPGAN 133 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~-~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t-~g~~~al~~~~~~l~~~gd~ 133 (301)
..++.+.+++.+....-- ...+.+ ..-+.+.|+.+++++ ++. ..+|+++ +|+|.+++.++.+++.+ +.
T Consensus 13 ~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~------~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~ 85 (361)
T TIGR01366 13 KVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELF------SLPDGYEVILGNGGATAFWDAATFGLIEK-KS 85 (361)
T ss_pred CCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHh------CCCCCceEEEECCchhHHHHHHHHhcccc-cc
Confidence 456778888764321000 112222 112456778888887 333 3478875 66999999999999743 33
Q ss_pred EEEcCCCCc-chHHHHHhc--CceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 022213 134 VLLPRPGWP-YYEGIAQRK--QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR 210 (301)
Q Consensus 134 Vl~~~p~~~-~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~ 210 (301)
.++..-.|. .+...++.. +.++..++... +..++ ..+.++++.|++++..|.||+..+ +++| ++
T Consensus 86 l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~lV~~~h~et~tG~~~p---i~~I---~~ 152 (361)
T TIGR01366 86 LHLSFGEFSSKFAKAVKLAPWLGEPIIVTADP--GSAPE-----PQADPGVDVIAWAHNETSTGVAVP---VRRP---EG 152 (361)
T ss_pred cEEecCHHHHHHHHHHHhhhccCCceEEecCC--CCCCC-----CccCCCCCEEEEcccCCccceecc---cccc---cc
Confidence 334343443 233344431 22556665432 22222 234567899999999999999999 5555 47
Q ss_pred hCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 211 ~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
++|+++|+|.+.+. +..+..+...+ ++++|..|.++.+|- ++.++++.
T Consensus 153 ~~g~~~iVDavqs~----g~~~idv~~~D-----~~~~s~~K~lg~~~G-l~~~~~s~ 200 (361)
T TIGR01366 153 SDDALVVIDATSGA----GGLPVDIAETD-----VYYFAPQKNFASDGG-LWLAIMSP 200 (361)
T ss_pred cCCCeEEEEcCccc----cCCCCCHHHCC-----EEEEEchhhcCCCCc-eEEEEECH
Confidence 89999999999987 33444444321 788999999998752 55555543
No 337
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.00 E-value=1.6e-08 Score=93.36 Aligned_cols=231 Identities=16% Similarity=0.166 Sum_probs=134.9
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.++|+..|.-.. +.-..++.+.+++.++++........ ....+.+..+++.+.+..+ ...+.++++++
T Consensus 37 l~D~dG~~ylD~~~g~~~~-~lGh~~p~i~~Ai~~q~~~~~~~~~~--~~~~~~~~~la~~L~~~~p--~~~~~v~f~~S 111 (428)
T PRK07986 37 LILADGRRLVDGMSSWWAA-IHGYNHPQLNAAMKSQIDAMSHVMFG--GITHPPAIELCRKLVAMTP--QPLECVFLADS 111 (428)
T ss_pred EEeCCCCEEEEcchhHHhh-cCCCCCHHHHHHHHHHHhhcCCcccc--ccCCHHHHHHHHHHHhhCC--CCcCEEEEeCC
Confidence 3445688999998773111 11123478889999888743211111 1123555666776655322 12368999999
Q ss_pred HHHHHHHHHHHhcC-------CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCC---CC-CCCH
Q 022213 116 CKQAVEVILSVLAR-------PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPER---NW-EVDL 170 (301)
Q Consensus 116 ~~~al~~~~~~l~~-------~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~---~~-~~~~ 170 (301)
+++|.+.+++.... ...+|+...-+|++........ +. ....++..... .+ ..|+
T Consensus 112 GsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~ 191 (428)
T PRK07986 112 GSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDI 191 (428)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHH
Confidence 99999999986642 2367998888898753222221 11 01122211000 00 1245
Q ss_pred HHHHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213 171 DAVEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI 245 (301)
Q Consensus 171 ~~l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi 245 (301)
+.+++.++. ...+.++.-| +.-.|. ..+.+.+++|.++|++||+++|+||++..+...+..+ ....++-..+++
T Consensus 192 ~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~f-a~~~~gv~PDi~ 270 (428)
T PRK07986 192 APFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLF-ACEHAGIAPDIL 270 (428)
T ss_pred HHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCee-eecccCCCCCEE
Confidence 667776642 2334445555 444455 4466899999999999999999999997764333322 222233233444
Q ss_pred EEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHh
Q 022213 246 TLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 246 ~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
+++|.++ .| +.+|.++++. ++++.++.
T Consensus 271 ---t~gK~l~-gG~~p~~av~~~~--------~i~~~~~~ 298 (428)
T PRK07986 271 ---CLGKALT-GGTMTLSATLTTR--------EVAETISN 298 (428)
T ss_pred ---Eechhhh-CCcccCcchhchH--------HHHHHhhc
Confidence 5899974 55 4777777633 46666654
No 338
>PRK07481 hypothetical protein; Provisional
Probab=98.99 E-value=6.1e-08 Score=90.26 Aligned_cols=224 Identities=15% Similarity=0.110 Sum_probs=129.9
Q ss_pred ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
...+++.+||+..|.-... --...+.+.+++.+++......... .....+.+..+++.+.+..+. -..+.+++++++
T Consensus 37 ~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~~lae~L~~~~~~-~~~~~v~f~~sG 113 (449)
T PRK07481 37 YDIDGKKLLDGVGGLWNVN-VGHNREEVKEAIVRQLDELEYYSTF-DGTTHPRAIELSYELIDMFAP-EGMRRVFFSSGG 113 (449)
T ss_pred EeCCCCEEEECchhHHhhc-CCCCCHHHHHHHHHHHHhccceecc-cccCCHHHHHHHHHHHHhcCC-CCCCEEEEcCch
Confidence 3446888999977621111 1124567889999988743211100 011235556677766553321 123589999999
Q ss_pred HHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCCC--CCC-CCHHH
Q 022213 117 KQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPER--NWE-VDLDA 172 (301)
Q Consensus 117 ~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~--~~~-~~~~~ 172 (301)
++|++.+++.... +| .+|+...-+|++........+. .+..++..... .+. .|.+.
T Consensus 114 sEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~ 193 (449)
T PRK07481 114 SDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEE 193 (449)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHH
Confidence 9999999987642 23 5788888889875432222111 11122111000 011 13333
Q ss_pred H--------Hhhcc---cCccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 173 V--------EALAD---KNTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 173 l--------~~~~~---~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
+ ++.+. .+..+.++.-| ..-.|. ..+.+.++++.++|++||+++|.||+...+...+.-+ ....++
T Consensus 194 ~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~g 272 (449)
T PRK07481 194 LARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWF-GSRGWG 272 (449)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhh-HhhhcC
Confidence 3 33332 12334455555 444566 4577889999999999999999999999875444322 122333
Q ss_pred CCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213 240 SIVPVITLGSISKRWLVPG-WRFGWLVTND 268 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~ 268 (301)
-..+++ +++|.++ .| +.+|.+++++
T Consensus 273 v~PDiv---~~gKgl~-gG~~Pi~av~~~~ 298 (449)
T PRK07481 273 VKPDIM---CLAKGIT-SGYVPLGATMVNA 298 (449)
T ss_pred CCCCEE---EEeeccc-CCCcCceEEEEcH
Confidence 344555 5699954 46 5899998843
No 339
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.99 E-value=1.8e-08 Score=92.96 Aligned_cols=220 Identities=17% Similarity=0.124 Sum_probs=129.0
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.++|+..|.-... --...+.+.+++.++++......+.. ...+....+++.+.+..+ ...+.++++++
T Consensus 34 l~D~dG~~ylD~~~g~~~~~-lGh~~p~i~~ai~~q~~~~~~~~~~~--~~~~~~~~lae~L~~~~p--~~~~~v~f~~S 108 (422)
T PRK05630 34 LTLEDGSTVIDAMSSWWSAA-HGHGHPRLKAAAHKQIDTMSHVMFGG--LTHEPAIKLTRKLLNLTD--NGLDHVFYSDS 108 (422)
T ss_pred EEECCCCEEEEcchhHHHhc-CCCCCHHHHHHHHHHHHhCCCcccCC--cCCHHHHHHHHHHHhhCC--CCcCEEEEeCC
Confidence 33556889999987732211 12245788899999987432211111 123445556666654322 12368999999
Q ss_pred HHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCCCCCC----
Q 022213 116 CKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERNWEVD---- 169 (301)
Q Consensus 116 ~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~~~---- 169 (301)
+++|++.+++.... ++ .+|+...-+|++....+... +. ....+|..... ..+
T Consensus 109 GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~ 186 (422)
T PRK05630 109 GSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVR--GSSPQEI 186 (422)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCccc--CCChHHH
Confidence 99999999986542 23 57898888898753322221 10 11222221111 111
Q ss_pred ---HHHHHhhcccCccEEEEcCC--CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213 170 ---LDAVEALADKNTAAMVIINP--GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP 243 (301)
Q Consensus 170 ---~~~l~~~~~~~~~~v~l~~p--~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~ 243 (301)
.+.+++.+.++..++ +.-| ..-.|.. .+.+.++++.++|++||+++|.||++..+...+. ......++-..+
T Consensus 187 ~~~~~~~~~~~~~~iAAv-i~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~gv~PD 264 (422)
T PRK05630 187 SEYLRSLELLIDETVAAI-IIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE-LFATLAAGVTPD 264 (422)
T ss_pred HHHHHHHHHHHhhceEEE-EEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch-hhHHHhcCCCCC
Confidence 233444444334444 4555 5556764 5678999999999999999999999977644332 212222333334
Q ss_pred EEEEecCcccCCCCc-ceeEEEEeeC
Q 022213 244 VITLGSISKRWLVPG-WRFGWLVTND 268 (301)
Q Consensus 244 vi~~~s~SK~~~~~G-~rvG~~~~~~ 268 (301)
++ +++|.++ .| ..+|.++++.
T Consensus 265 i~---t~gK~l~-gG~~p~~av~~~~ 286 (422)
T PRK05630 265 IM---CVGKALT-GGFMSFAATLCTD 286 (422)
T ss_pred ee---eeechhh-cCccccceeeccH
Confidence 44 7899853 45 4789988743
No 340
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=98.99 E-value=7.6e-09 Score=92.90 Aligned_cols=214 Identities=18% Similarity=0.173 Sum_probs=132.4
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.++|+..|.-... .-..++.+.+++++++..... ........+.+.++++.+.+..+ -..++++++++++
T Consensus 12 d~dG~~~lD~~~~~~~~~-lGh~~p~i~~ai~~~~~~~~~--~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGs 86 (339)
T PF00202_consen 12 DVDGREYLDFMSGYGSVN-LGHNHPEIAEAIAEQANKLNY--VSFSGFTHPEAAELAEKLAELFP--GGLDRVFFANSGS 86 (339)
T ss_dssp ETTSEEEEESSHHHHTTT-T-BT-HHHHHHHHHHHHHCSS--CSTTTSEEHHHHHHHHHHHHHSS--TTEEEEEEESSHH
T ss_pred ECCCCEEEECCCCcccee-cCCCccccchhHHHHhhhccc--ccccceeccchhhhhhhhhhccc--cccceeeeccCch
Confidence 345788999976621111 112346888899988875432 12123345667777777776542 1456899999999
Q ss_pred HHHHHHHHHhc------C--CCCEEEEcCCCCcchHHHHHhcC-------------ceEEEeecCCCCCCCCCHHH----
Q 022213 118 QAVEVILSVLA------R--PGANVLLPRPGWPYYEGIAQRKQ-------------VEVRHFDLLPERNWEVDLDA---- 172 (301)
Q Consensus 118 ~al~~~~~~l~------~--~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~---- 172 (301)
+|++.+++... . ...+|+...-+|++........+ .....+|. .+...
T Consensus 87 eAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~ 159 (339)
T PF00202_consen 87 EAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPF-------PDPAADEEE 159 (339)
T ss_dssp HHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEET-------TCHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccC-------CccchhhhH
Confidence 99999999876 2 34789999989986432222111 12344443 22222
Q ss_pred ------HHhhc---ccCccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 173 ------VEALA---DKNTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 173 ------l~~~~---~~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
+++.+ ..+..+.++.-| ....|. ..+.+.+++|.++|++||+++|.||++..+...++ ......++-.
T Consensus 160 ~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~-~~a~~~~gv~ 238 (339)
T PF00202_consen 160 QACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK-FFASEHYGVD 238 (339)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS-SSGHHHHTSS
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCC-ccceeccccc
Confidence 22222 223334555555 333454 45677899999999999999999999999866664 3334445555
Q ss_pred CCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 242 VPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
++++ +++|.++ .|+.+|.++++.
T Consensus 239 PDiv---~~gK~l~-gG~p~sav~~~~ 261 (339)
T PF00202_consen 239 PDIV---TFGKGLG-GGLPISAVLGSE 261 (339)
T ss_dssp SSEE---EEEGGGG-TTSSEEEEEEEH
T ss_pred Cccc---ccccchh-hhhhcccccccc
Confidence 5666 4579965 569999999854
No 341
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=98.98 E-value=1.1e-08 Score=92.68 Aligned_cols=207 Identities=17% Similarity=0.164 Sum_probs=131.4
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
..-+|||-.-.-. -.+.+.++++|.. ++ ..|+.+.....|.+.+++++ ..+.++.|..++.+-
T Consensus 40 ~dV~IDLrSDTgT----~apS~~m~aAM~~----GD-D~Y~gdpSv~~Lee~vael~--------G~E~alpthqGRgaE 102 (467)
T TIGR02617 40 EDVFIDLLTDSGT----GAVTQSMQAAMMR----GD-EAYSGSRSYYALAESVKNIF--------GYQYTIPTHQGRGAE 102 (467)
T ss_pred CCeEEECccCCCC----CCCCHHHHHHHHc----CC-cccccCchHHHHHHHHHHHh--------CCceEEECCCCchHH
Confidence 3446777554321 1134566666653 22 25887778899999999998 345688898889999
Q ss_pred HHHHHHhcC-CCCEEEEcCC-------C-CcchHHHHHhcCceEEEeecC--------CCCCCCCCHHHHHhhccc----
Q 022213 121 EVILSVLAR-PGANVLLPRP-------G-WPYYEGIAQRKQVEVRHFDLL--------PERNWEVDLDAVEALADK---- 179 (301)
Q Consensus 121 ~~~~~~l~~-~gd~Vl~~~p-------~-~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~l~~~~~~---- 179 (301)
.+++..+++ +||.+++..+ . |......+...|..+..++.. ......+|++++++++++
T Consensus 103 ~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~ 182 (467)
T TIGR02617 103 QIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN 182 (467)
T ss_pred HHHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCC
Confidence 999999998 7887775443 2 222345567778777665321 122346899999999874
Q ss_pred CccEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCeEEEccCCccc-c---------cCCCCCCCcc-ccCCCCCEEEE
Q 022213 180 NTAAMVIINPGN-PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHL-T---------FGSIPYTPMG-LFGSIVPVITL 247 (301)
Q Consensus 180 ~~~~v~l~~p~n-ptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~-~---------~~~~~~~~~~-~~~~~~~vi~~ 247 (301)
+...+...--+| --|..+|.+.++++.++|++||+.++.|.+-..- . +.+.....+. .+-...+ .+.
T Consensus 183 ~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aD-svt 261 (467)
T TIGR02617 183 NVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYAD-MLA 261 (467)
T ss_pred CceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCC-EEE
Confidence 222222221223 4588999999999999999999999999865431 1 2222211111 0011122 455
Q ss_pred ecCcccCCCC-cceeEEEEeeC
Q 022213 248 GSISKRWLVP-GWRFGWLVTND 268 (301)
Q Consensus 248 ~s~SK~~~~~-G~rvG~~~~~~ 268 (301)
.|+||.+++| | |++++++
T Consensus 262 ~slsKglgApvG---g~Lag~d 280 (467)
T TIGR02617 262 MSAKKDAMVPMG---GLLCFKD 280 (467)
T ss_pred EEcCCCCCCccc---ceEEecc
Confidence 6999998877 4 5566544
No 342
>PRK06917 hypothetical protein; Provisional
Probab=98.97 E-value=1.2e-07 Score=88.18 Aligned_cols=230 Identities=16% Similarity=0.124 Sum_probs=135.5
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.+||+..|.-... --...+.+.+++.++++.... .+.. ....+.+.++++.+.+..+ ...+.++++++
T Consensus 25 l~D~dG~~ylD~~~g~~~~~-lGh~hp~v~~Ai~~ql~~~~~-~~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~s 99 (447)
T PRK06917 25 LYDQNGNKYFDGSSGAVTAG-IGHGVKEIADAIKEQAEEVSF-VYRS-QFTSEPAEKLAKKLSDLSP--GDLNWSFFVNS 99 (447)
T ss_pred EEeCCCCEEEECchhHHhcc-CCCCCHHHHHHHHHHHhhCcC-cccc-ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence 33456889999987732111 122457888999999875321 1111 1123556667777755322 12357999999
Q ss_pred HHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC--CC-----
Q 022213 116 CKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN--WE----- 167 (301)
Q Consensus 116 ~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~----- 167 (301)
+++|.+.+++.... +| .+|+...-+|++........ +. .+..++...... +.
T Consensus 100 GsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 179 (447)
T PRK06917 100 GSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPT 179 (447)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHH
Confidence 99999999997731 23 67998888998764333221 11 011111110000 00
Q ss_pred ---CCHHHHHhhccc---CccEEEEcCC-C-CCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213 168 ---VDLDAVEALADK---NTAAMVIINP-G-NPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238 (301)
Q Consensus 168 ---~~~~~l~~~~~~---~~~~v~l~~p-~-nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 238 (301)
.+++.+++.++. +..+.++.-| . +--|. ..+.+.+++|.++|++||+++|.||++..+...+..+ ....+
T Consensus 180 ~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~-a~~~~ 258 (447)
T PRK06917 180 CQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMF-AMEHW 258 (447)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchh-hHHhc
Confidence 023455666642 2344555556 3 23344 5678899999999999999999999998764444322 12223
Q ss_pred CCCCCEEEEecCcccCCCCcc-eeEEEEeeCCCCcccchhHHHHHH
Q 022213 239 GSIVPVITLGSISKRWLVPGW-RFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 239 ~~~~~vi~~~s~SK~~~~~G~-rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
+-..+++ +++|.++ .|+ .+|.+++.. ++++.+.
T Consensus 259 gv~PDi~---~~gK~l~-~G~~Pi~a~~~~~--------~i~~~~~ 292 (447)
T PRK06917 259 GVEPDIM---TLGKGLG-AGYTPIAATVVSD--------RVMEPIL 292 (447)
T ss_pred CCCCCEE---Eeeehhc-cCCcceEEEEEcH--------HHHHHHh
Confidence 3334454 6799964 564 899998743 4666554
No 343
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.97 E-value=6.3e-08 Score=90.49 Aligned_cols=225 Identities=14% Similarity=0.059 Sum_probs=134.3
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCC---CCCCCEEE
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYK---LSADDVYV 112 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~---~~~~~i~~ 112 (301)
+...+++.+||+..|.-... --...+.+.+++.++++.-. ......-..+.+..+++.+.+..+.. -+.+.+++
T Consensus 58 l~D~dG~~ylD~~~g~~~~~-lGh~~p~i~~Ai~~q~~~l~--~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f 134 (472)
T PRK08742 58 LVGHDGRRYLDAVSSWWTNL-FGHAEPRIGAAIAAQAGELE--QVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFY 134 (472)
T ss_pred EEeCCCCEEEEcCccHHhcc-CCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEE
Confidence 44556888999987721110 11245678899988876321 11111112345566777665532210 12358999
Q ss_pred cCCHHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhcC-c------------eEEEeecCCCC--CCCC-
Q 022213 113 TLGCKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRKQ-V------------EVRHFDLLPER--NWEV- 168 (301)
Q Consensus 113 t~g~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~g-~------------~~~~~~~~~~~--~~~~- 168 (301)
++++++|.+.+++.... + ..+|+...-+|++........+ . .+..++..... .++.
T Consensus 135 ~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~ 214 (472)
T PRK08742 135 ADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQS 214 (472)
T ss_pred eCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCC
Confidence 99999999999987642 2 2679988888987643332221 1 11222221100 0011
Q ss_pred -------CHHHHHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc
Q 022213 169 -------DLDAVEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG 236 (301)
Q Consensus 169 -------~~~~l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~ 236 (301)
+++.+++.+.. ...+.++.-| ..-.|. ..+.+.++++.++|++||+++|.||+...+...+. .....
T Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~-~~a~e 293 (472)
T PRK08742 215 AEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT-LFACE 293 (472)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chHHH
Confidence 24556666532 2344455556 455566 56788999999999999999999999998765553 22233
Q ss_pred ccCCCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213 237 LFGSIVPVITLGSISKRWLVPG-WRFGWLVTND 268 (301)
Q Consensus 237 ~~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~ 268 (301)
.++-..+++ +++|.++ .| +.+|.+++++
T Consensus 294 ~~gv~PDiv---~~gKgl~-gG~~Plaav~~~~ 322 (472)
T PRK08742 294 QAGVMPDLL---CLSKGLT-GGFLPLSAVLATQ 322 (472)
T ss_pred hcCCCCCEE---EEccccc-CCCCCcceeeccH
Confidence 344445566 5599954 56 4889988743
No 344
>PRK07036 hypothetical protein; Provisional
Probab=98.96 E-value=8.8e-08 Score=89.56 Aligned_cols=230 Identities=19% Similarity=0.183 Sum_probs=133.8
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF-NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
+...+++.+||+..|.-... --..++.+.+++.+++..... ..+. ....+.+..+|+.+....+ ...+.+++++
T Consensus 45 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~q~~~~~~~~~~~--~~~~~~~~~lae~L~~~~p--~~~~~v~f~~ 119 (466)
T PRK07036 45 VTDADGRRYLDGIGGMWCVN-VGYGREEMADAIADQARRLPYYTPFG--DMTNAPAAELAAKLAELAP--GDLNHVFLTT 119 (466)
T ss_pred EEECCCCEEEECcccHHhhc-CCCCCHHHHHHHHHHHHhCccccccc--ccCCHHHHHHHHHHHHhCC--CCcCEEEEeC
Confidence 33456889999987732111 112457888999988874211 1111 0123556667777655322 1235899999
Q ss_pred CHHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCC--CCCCCC--
Q 022213 115 GCKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPE--RNWEVD-- 169 (301)
Q Consensus 115 g~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~--~~~~~~-- 169 (301)
++++|++.+++.... + ..+|+...-+|++....+... +. .+..++.... ..++..
T Consensus 120 sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 199 (466)
T PRK07036 120 GGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEA 199 (466)
T ss_pred CchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChH
Confidence 999999999986531 2 267888888888754332221 11 1222221110 001111
Q ss_pred ------HHHHHhhcc---cCccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc-c
Q 022213 170 ------LDAVEALAD---KNTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG-L 237 (301)
Q Consensus 170 ------~~~l~~~~~---~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~-~ 237 (301)
.+.+++.+. .+..+.++.-| ....|. ..+.+.+++|.++|++||+++|.||+...+...+.-+ ... .
T Consensus 200 ~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-~~~~~ 278 (466)
T PRK07036 200 AFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFF-ASEAV 278 (466)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhh-hhhhh
Confidence 233444442 12334455555 444566 4567899999999999999999999998774443211 222 2
Q ss_pred cCCCCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHH
Q 022213 238 FGSIVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIK 283 (301)
Q Consensus 238 ~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~ 283 (301)
++-..+++ +++|.++ .| +.+|.++++. ++.+.+.
T Consensus 279 ~gv~PDiv---t~gK~l~-gG~~Pi~av~~~~--------~i~~~~~ 313 (466)
T PRK07036 279 FGIQPDII---TFAKGLT-SGYQPLGAVIISE--------RLLDVIS 313 (466)
T ss_pred cCCCCCEE---EEccccc-cCccccEEEEEcH--------HHHHHHh
Confidence 33334455 6799964 56 4899998743 4666554
No 345
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=98.96 E-value=6.3e-08 Score=82.21 Aligned_cols=167 Identities=18% Similarity=0.250 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEE-EcCCCCcchHH----------HHHhcCc
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL-LPRPGWPYYEG----------IAQRKQV 153 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl-~~~p~~~~~~~----------~~~~~g~ 153 (301)
|-..|.+..|+-+ +....--+.-+.+ +|+||.+++..+++|||+.+ +.-.-|..... .++..|+
T Consensus 66 GRdtLe~vyA~vf----~aE~a~VRpq~is-GTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi 140 (416)
T COG4100 66 GRDTLERVYAQVF----GAEAALVRPQIIS-GTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGI 140 (416)
T ss_pred chhHHHHHHHHHh----ccccceeeeeeec-chhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCc
Confidence 4455555555554 3222222334444 48999999999999999987 34444544333 3466788
Q ss_pred eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCC-CCCcccCCCHHHHHHHHHHHHhC--CCeEEEccCCcccccCCC
Q 022213 154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP-GNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSI 230 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p-~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~ 230 (301)
+...+++..+. .+|.+.++..+++++|.+.+.-. ....--.++.+++++++++.++- |+++.+|+||++|+-..+
T Consensus 141 ~Y~~v~Lt~~g--kiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~E 218 (416)
T COG4100 141 KYKAVPLTADG--KIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKE 218 (416)
T ss_pred ceeecccccCC--cccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccC
Confidence 88888886543 49999999999999998877532 22222247778999999998764 689999999999885432
Q ss_pred CCCCccccCCCCCEEEEecCcccCCCCcc--eeEEEEe
Q 022213 231 PYTPMGLFGSIVPVITLGSISKRWLVPGW--RFGWLVT 266 (301)
Q Consensus 231 ~~~~~~~~~~~~~vi~~~s~SK~~~~~G~--rvG~~~~ 266 (301)
+..+. .+ +.-+|+-|+-|. |+ --||+++
T Consensus 219 -Pt~vG---aD---liAGSLIKNpGG-giaktGGYiaG 248 (416)
T COG4100 219 -PTHVG---AD---LIAGSLIKNPGG-GIAKTGGYIAG 248 (416)
T ss_pred -ccccc---hh---hhccceeeCCCC-ceeeccceeec
Confidence 22221 12 778899998332 21 1277776
No 346
>PRK07480 putative aminotransferase; Validated
Probab=98.95 E-value=8.4e-08 Score=89.43 Aligned_cols=222 Identities=18% Similarity=0.153 Sum_probs=128.7
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC-CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT-NSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
+...+++.+||+..|.-... .-...+.+.++++++++.... +.. .....+.+..+|+.+.+..+ ...+++++++
T Consensus 44 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~q~~~~~~--~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~ 118 (456)
T PRK07480 44 LWDSEGNKILDGMAGLWCVN-VGYGRKELADAAARQMRELPY--YNTFFKTTHPPAIELAAKLAEVAP--PGFNHVFFTN 118 (456)
T ss_pred EEeCCCCEEEEccchHHHhc-CCCCCHHHHHHHHHHHHhcCC--cccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeC
Confidence 33456889999987721111 112457888999998874321 111 11234556666766655332 1246899999
Q ss_pred CHHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cce------------EEEeecCCC--CCCCCC--
Q 022213 115 GCKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QVE------------VRHFDLLPE--RNWEVD-- 169 (301)
Q Consensus 115 g~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~~--~~~~~~-- 169 (301)
++++|.+.+++.... +| .+|+...-+|++........ +.. +..++.... ..+..+
T Consensus 119 SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 198 (456)
T PRK07480 119 SGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPE 198 (456)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChH
Confidence 999999999986632 23 46888888888753222111 110 111111000 000011
Q ss_pred ------HHHHHhhccc---CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213 170 ------LDAVEALADK---NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238 (301)
Q Consensus 170 ------~~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~ 238 (301)
.+.+++.+.+ +..+.++.-| ..-.|.. .+.+.+++|.++|++||+++|.||++..+...+.. .....+
T Consensus 199 ~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~-~a~~~~ 277 (456)
T PRK07480 199 EFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEW-FGSQHF 277 (456)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch-hhhhhc
Confidence 2455543321 2333444445 4445664 56778999999999999999999999887544432 222333
Q ss_pred CCCCCEEEEecCcccCCCCc-ceeEEEEee
Q 022213 239 GSIVPVITLGSISKRWLVPG-WRFGWLVTN 267 (301)
Q Consensus 239 ~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~ 267 (301)
+-..+++ +++|.++ .| +.+|.++++
T Consensus 278 gv~PDiv---~~gK~l~-gG~~Pi~av~~~ 303 (456)
T PRK07480 278 GIKPDLM---TIAKGLT-SGYIPMGAVGVG 303 (456)
T ss_pred CCCCCee---eeehhhc-cCCccceEEEEc
Confidence 3334455 6799965 46 488999884
No 347
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.95 E-value=5e-08 Score=91.08 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=130.8
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+||+..|.-.. .--..++.+.+++.++++.-.. ........+.+.++++.+.+..+ ...+.++++++++
T Consensus 52 D~dG~~ylD~~~g~~~~-~lGh~~p~v~~Ai~~ql~~l~~--~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGs 126 (460)
T PRK06916 52 DVNGNEYYDGVSSIWLN-VHGHQVPELDEAIREQLNKIAH--STLLGLANVPSILLAEKLIEVVP--EGLKKVFYSDSGA 126 (460)
T ss_pred eCCCCEEEEcchhHHHh-hcCCCCHHHHHHHHHHHHhCCC--ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcH
Confidence 44688889987662110 0123457788999998874211 11101123445556666654322 1235899999999
Q ss_pred HHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCC--CCC-------
Q 022213 118 QAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPER--NWE------- 167 (301)
Q Consensus 118 ~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~--~~~------- 167 (301)
+|.+.+++.... +| .+|+...-+|++....+... +. ....+|..... .+.
T Consensus 127 eAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~ 206 (460)
T PRK06916 127 TAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIV 206 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHH
Confidence 999999987642 33 67898888898754332222 11 11222211000 001
Q ss_pred -CCHHHHHhhccc--CccEEEEcCC--CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 168 -VDLDAVEALADK--NTAAMVIINP--GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 168 -~~~~~l~~~~~~--~~~~v~l~~p--~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
.+++.+++.++. ...+.++.-| ..-.|.. .+.+.++++.++|++||+++|.||++..+...+..+ ....++-.
T Consensus 207 ~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~-a~~~~gv~ 285 (460)
T PRK06916 207 KKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF-ACEHENVT 285 (460)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhh-HHHhcCCC
Confidence 124556666642 2334455555 4555665 588999999999999999999999998764444321 22233333
Q ss_pred CCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213 242 VPVITLGSISKRWLVPG-WRFGWLVTND 268 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~~G-~rvG~~~~~~ 268 (301)
.+++ +++|.++ .| +.+|.+++++
T Consensus 286 PDiv---~~gK~l~-gG~~Pi~av~~~~ 309 (460)
T PRK06916 286 PDIM---TAGKGLT-GGYLPIAITVTTD 309 (460)
T ss_pred CCee---eeehhhh-cCccccceeeecH
Confidence 4455 6799965 56 5899998843
No 348
>PRK07483 hypothetical protein; Provisional
Probab=98.94 E-value=8.1e-08 Score=89.26 Aligned_cols=221 Identities=18% Similarity=0.148 Sum_probs=129.7
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+||+..|.-.. .--..++.+.++++++++..... .......+....+++.+....+ -..+.++++++++
T Consensus 26 D~dG~~ylD~~~g~~~~-~lGh~~p~v~~av~~ql~~~~~~--~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGs 100 (443)
T PRK07483 26 DATGKRYLDASGGAAVS-CLGHSHPRVIAAIHAQIDRLAYA--HTSFFTTEPAEALADRLVAAAP--AGLEHVYFVSGGS 100 (443)
T ss_pred eCCCCEEEEcCccHhhh-ccCCCCHHHHHHHHHHHHhccCc--cccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCCcH
Confidence 44688999998772211 11234577889999998743211 1111123455667776655322 1236899999999
Q ss_pred HHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCC-CCC--CC-----
Q 022213 118 QAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPE-RNW--EV----- 168 (301)
Q Consensus 118 ~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~-~~~--~~----- 168 (301)
+|.+.+++.... +| .+|+...-+|++........ +. .+..++.... ... ..
T Consensus 101 EAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (443)
T PRK07483 101 EAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAY 180 (443)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHH
Confidence 999999986642 23 56888888888763222221 11 1111221100 000 00
Q ss_pred ---CHHHHHhhccc---CccEEEEcCCCC--Cccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 169 ---DLDAVEALADK---NTAAMVIINPGN--PCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 169 ---~~~~l~~~~~~---~~~~v~l~~p~n--ptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
.++.+++.+.. +..+.++.-|-. -.|. ..+.+.++++.++|++||+++|.||+...+...+. ......++
T Consensus 181 ~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~g 259 (443)
T PRK07483 181 GQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT-LFACEEDG 259 (443)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcH-HHHHhhcC
Confidence 02455654431 233445555632 2354 56788999999999999999999999998754442 22222333
Q ss_pred CCCCEEEEecCcccCCCCcc-eeEEEEeeC
Q 022213 240 SIVPVITLGSISKRWLVPGW-RFGWLVTND 268 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G~-rvG~~~~~~ 268 (301)
-..+++ +++|.+ ..|+ .+|.+++++
T Consensus 260 v~PDiv---~~gK~l-~gG~~Pi~av~~~~ 285 (443)
T PRK07483 260 VAPDLV---TIAKGL-GAGYQPIGAVLASD 285 (443)
T ss_pred CCCCee---eehhhh-ccCccccEEEEEcH
Confidence 344556 669995 4575 899998843
No 349
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.93 E-value=6.3e-08 Score=90.45 Aligned_cols=223 Identities=13% Similarity=0.049 Sum_probs=133.3
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.++|+..|.-... .-..++.+.+++.++++.... ........+.+..+++.+.+..+ ...+.++++++
T Consensus 41 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~ql~~l~~--~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~s 115 (466)
T PRK07030 41 LEDFEGKRYLDAVSSWWVNV-FGHANPRINQRIKDQVDQLEH--VILAGFSHEPVIELSERLVKITP--PGLSRCFYADN 115 (466)
T ss_pred EEECCCCEEEEcchhHHhhc-CCCCCHHHHHHHHHHHHhcCC--ccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCC
Confidence 44556889999977732111 112456788999998874321 11111223555666666654221 12358999999
Q ss_pred HHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCC--CCC-----
Q 022213 116 CKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPER--NWE----- 167 (301)
Q Consensus 116 ~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~--~~~----- 167 (301)
+++|.+.+++.... + ..+|+...-+|++........ +. .+..+|..... .++
T Consensus 116 GsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~ 195 (466)
T PRK07030 116 GSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEE 195 (466)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHH
Confidence 99999999987632 2 357888888898764333222 11 11122211100 001
Q ss_pred ---CCHHHHHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 168 ---VDLDAVEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 168 ---~~~~~l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
-+++.+++.++. ...+.++.-| ..-.|. ..+.+.++++.++|++||+++|.||++..+...+. ......++
T Consensus 196 ~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~-~~a~~~~g 274 (466)
T PRK07030 196 HSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT-MFACEQAG 274 (466)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc-chHHHhcC
Confidence 124556666642 2334455555 444466 55678999999999999999999999988755443 22223334
Q ss_pred CCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213 240 SIVPVITLGSISKRWLVPG-WRFGWLVTND 268 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~ 268 (301)
-..+++ +++|.++ .| +.+|.++++.
T Consensus 275 v~PDiv---~~gKgl~-gG~~Pi~av~~~~ 300 (466)
T PRK07030 275 IRPDFL---CLSKALT-GGYLPLAAVLTTD 300 (466)
T ss_pred CCCCEE---eeehhcc-CCcccceEEEecH
Confidence 444566 5599965 57 4899998743
No 350
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=98.93 E-value=8.1e-08 Score=84.67 Aligned_cols=229 Identities=15% Similarity=0.152 Sum_probs=142.1
Q ss_pred cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC-----CCCC-CCCCCCCHHHHHHHHH
Q 022213 22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG-----KFNC-YATNSGIPPARRAIAD 95 (301)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~-----~~~~-Y~~~~g~~~lr~~ia~ 95 (301)
...|+++++..... .+..|+|=.-+. -..+.+.+++...+.+. ...+ |+--+...++.+...+
T Consensus 11 d~~i~~~i~~e~~r-----q~~~ieLIASEN------~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laie 79 (413)
T COG0112 11 DPEIFEAIQQELER-----QREHIELIASEN------FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIE 79 (413)
T ss_pred CHHHHHHHHHHHHH-----Hhhceeeeeccc------cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHH
Confidence 34566666544332 346788854442 24567888887776531 1112 3333334555555555
Q ss_pred HHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH---HHHhcC--ceEEEeecCCCCCCCCCH
Q 022213 96 YLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG---IAQRKQ--VEVRHFDLLPERNWEVDL 170 (301)
Q Consensus 96 ~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g--~~~~~~~~~~~~~~~~~~ 170 (301)
..++-++ .+--||-..+| ++|...++.+|++|||+|+-.+-.+.++.. -+...| .+.+.++++++ +..+|.
T Consensus 80 rak~LFg--a~~anVQPhSG-s~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDy 155 (413)
T COG0112 80 RAKKLFG--AEYANVQPHSG-SQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDY 155 (413)
T ss_pred HHHHHhC--CCccccCCCCc-hHHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCH
Confidence 5555444 33445555555 688889999999999999977766665422 122223 35555666544 456999
Q ss_pred HHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEe
Q 022213 171 DAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLG 248 (301)
Q Consensus 171 ~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~ 248 (301)
|++++.+.+ ++|.++.-.-..| ..++ ++++.++|.+-|.++++|-++.. ++-++..+.|+..-+ |+.+
T Consensus 156 D~~~k~a~e~kPK~ii~G~SaY~--r~id---~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~Ad-----vVTt 225 (413)
T COG0112 156 DEVEKLAKEVKPKLIIAGGSAYS--RPID---FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHAD-----VVTT 225 (413)
T ss_pred HHHHHHHHHhCCCEEEECccccc--cccC---HHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccc-----eEeC
Confidence 999997765 6776654332222 3455 66666667788999999999874 344454444544311 8899
Q ss_pred cCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213 249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 249 s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
|++|+ ++|-|-|.+...+ +++.+++..
T Consensus 226 TTHKT--lrGPrGG~Il~~~-------eel~kkin~ 252 (413)
T COG0112 226 TTHKT--LRGPRGGIILTND-------EELAKKINS 252 (413)
T ss_pred CcccC--CCCCCceEEEecc-------HHHHHHhhh
Confidence 99999 5777888887643 357777765
No 351
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=98.93 E-value=3e-08 Score=91.72 Aligned_cols=228 Identities=15% Similarity=0.168 Sum_probs=129.6
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.++|+..|.-...- -..++.+.+++.+++++......... ..+....+++.+.+..+ ..-+.++++++++
T Consensus 41 d~dG~~ylD~~~g~~~~~l-Gh~~p~v~~ai~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~--~~~~~v~f~~sGs 115 (427)
T TIGR00508 41 LDDGRRLIDGMSSWWAAIH-GYNHPRLNAAAQKQIDKMSHVMFGGF--THKPAIELCQKLVKMTP--NALDCVFLADSGS 115 (427)
T ss_pred eCCCCEEEEccchHHHhcC-CCCCHHHHHHHHHHHHhcCCcccccc--CCHHHHHHHHHHHhhCC--CCCCEEEEeCCcH
Confidence 4468899999877321111 13456888899888874321111000 11233445555544222 1236899999999
Q ss_pred HHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cce-------------EEEeecCCCCCCC-----CCH
Q 022213 118 QAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QVE-------------VRHFDLLPERNWE-----VDL 170 (301)
Q Consensus 118 ~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~~-------------~~~~~~~~~~~~~-----~~~ 170 (301)
+|++.+++.... +| .+|+...-+|++....+... +.. ...++. +...+. .++
T Consensus 116 eA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~ 194 (427)
T TIGR00508 116 VAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPA-PQNRFDEEWNEEAI 194 (427)
T ss_pred HHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCC-CCccccchhHHHHH
Confidence 999999886542 23 67998888888753322221 211 011111 001110 135
Q ss_pred HHHHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213 171 DAVEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI 245 (301)
Q Consensus 171 ~~l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi 245 (301)
+++++.+.. ...+.++.-| +.-.|. ..+.+.+++|.++|++||+++|+||++..+...+..+ ....++-..+++
T Consensus 195 ~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~-~~~~~~v~pDi~ 273 (427)
T TIGR00508 195 TPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLF-ACEHAGVVPDIL 273 (427)
T ss_pred HHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccc-hhhhcCCCCCEE
Confidence 566666542 2344555555 444455 4578999999999999999999999997764444322 222232233344
Q ss_pred EEecCcccCCCCcc-eeEEEEeeCCCCcccchhHHHHHHh
Q 022213 246 TLGSISKRWLVPGW-RFGWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 246 ~~~s~SK~~~~~G~-rvG~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
+++|.+ ..|+ -++.++++ +++++.++.
T Consensus 274 ---~~gK~l-~gG~~p~~a~~~~--------~~~~~~~~~ 301 (427)
T TIGR00508 274 ---CVGKAL-TGGYMTLSATVTT--------DKVAQTISS 301 (427)
T ss_pred ---Eechhh-hcCcccceEEEEc--------HHHHHHHhc
Confidence 379997 4564 56666653 246666653
No 352
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=98.92 E-value=1.3e-07 Score=88.29 Aligned_cols=223 Identities=16% Similarity=0.121 Sum_probs=131.4
Q ss_pred ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-CCCEEEc-C
Q 022213 37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVT-L 114 (301)
Q Consensus 37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t-~ 114 (301)
...+++.+||+..|.-... .-..++.+.+++++++.... .+.......+.+.++++.+....+.... .+.++++ +
T Consensus 58 ~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~ql~~~~--~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~ 134 (464)
T PRK06938 58 EDVEGRQFIDCLAGAGTLA-LGHNHPVVIEAIQQVLADEL--PLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGP 134 (464)
T ss_pred EeCCCCEEEEccCCccccc-cCCCCHHHHHHHHHHHHhhh--cccccccCCHHHHHHHHHHHHhCcccccccceEEEeCC
Confidence 3446888999977732211 12345788899999886322 1111111234555566665442221111 1356564 7
Q ss_pred CHHHHHHHHHHHhcC-C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC--C--------CCC
Q 022213 115 GCKQAVEVILSVLAR-P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN--W--------EVD 169 (301)
Q Consensus 115 g~~~al~~~~~~l~~-~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~--------~~~ 169 (301)
++++|.+.+++.... . ..+|+...-+|++........ +. .+..++...... + ..+
T Consensus 135 SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 214 (464)
T PRK06938 135 TGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRAN 214 (464)
T ss_pred CcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHH
Confidence 999999999987642 2 367888888888764332221 10 122232211100 0 012
Q ss_pred HHHHHhhccc-----CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213 170 LDAVEALADK-----NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV 242 (301)
Q Consensus 170 ~~~l~~~~~~-----~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~ 242 (301)
.+.+++.+.+ ...+.++.-| ..-.|.+ .+.+.++++.++|++||+++|.||+...+...+. ......++-..
T Consensus 215 ~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~e~~gv~P 293 (464)
T PRK06938 215 LHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEHAGIIP 293 (464)
T ss_pred HHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcH-HHHHHhcCCCC
Confidence 5667776653 1234555566 3334654 5689999999999999999999999998755443 22223344445
Q ss_pred CEEEEecCcccCCCCcceeEEEEee
Q 022213 243 PVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 243 ~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+++ +++|.++ .|+.+|.+++.
T Consensus 294 Div---~~gKglg-gG~PlsAv~~~ 314 (464)
T PRK06938 294 DVV---VLSKAIG-GSLPLAVVVYR 314 (464)
T ss_pred CEE---Eeecccc-CCCceEEEeeh
Confidence 566 5699965 68999999874
No 353
>PRK06148 hypothetical protein; Provisional
Probab=98.92 E-value=7.4e-08 Score=97.81 Aligned_cols=217 Identities=15% Similarity=0.070 Sum_probs=129.7
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.++++..|... --...+.+.+++.+++...... . ....+.+..+|+.+....+ -..+.++++++++
T Consensus 620 D~dG~~ylD~~~g~~~---lGH~hp~v~~Ai~~q~~~l~~~---~-~~~~~~~~~lAe~L~~~~p--~~~~~v~f~nSGs 690 (1013)
T PRK06148 620 DNRGRAYLDCFNNVCH---VGHAHPRVVAAAARQAARLNTN---T-RYLHDAIVAYAERLTATLP--DGLTVAFFVNSGS 690 (1013)
T ss_pred ECCCCEEEEcccChhh---cCCCCHHHHHHHHHHHhhcCCc---C-CcCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcH
Confidence 3457888998777421 1235678899999988743111 1 1223455566666655322 1236799999999
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCC--CCCCCC-C-------HHH
Q 022213 118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLP--ERNWEV-D-------LDA 172 (301)
Q Consensus 118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~--~~~~~~-~-------~~~ 172 (301)
||.+.+++.... ...+|+...-+|++........ +. .+..++... ...+.. + .+.
T Consensus 691 EA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 770 (1013)
T PRK06148 691 EANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAES 770 (1013)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHH
Confidence 999999987753 3467888888888753222111 10 011111100 001111 1 123
Q ss_pred HHhhcc---c--CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213 173 VEALAD---K--NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI 245 (301)
Q Consensus 173 l~~~~~---~--~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi 245 (301)
+++.++ . +..+.++.-| ..-.|. ..+.+.++++.++|++||+++|.||++..+...+........++-..+++
T Consensus 771 l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDiv 850 (1013)
T PRK06148 771 VAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIV 850 (1013)
T ss_pred HHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCccee
Confidence 444432 1 2334455555 333344 66788999999999999999999999988755443333333344344555
Q ss_pred EEecCcccCCCCcceeEEEEee
Q 022213 246 TLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 246 ~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+++|.++ .|+.+|.+++.
T Consensus 851 ---t~gK~lg-gG~Plgav~~~ 868 (1013)
T PRK06148 851 ---TMGKPIG-NGHPMGAVVTT 868 (1013)
T ss_pred ---eeccccc-CCcceEEEEEc
Confidence 6799965 68999999984
No 354
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=98.91 E-value=1.8e-07 Score=83.34 Aligned_cols=201 Identities=19% Similarity=0.158 Sum_probs=138.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHH-HHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEE---
Q 022213 60 TAVEAEDAIVDAVRSGKFNCYATNSGIPPAR-RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL--- 135 (301)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr-~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl--- 135 (301)
..+++.+++..+++......|.-..|...-| ..+++.+. + -...+.++++++.+.|+..++.++.+++..|+
T Consensus 39 ~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~---~-~~~aea~~ivnnn~aAVll~~~al~~~~EvVis~g 114 (395)
T COG1921 39 YSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLC---G-LTGAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRG 114 (395)
T ss_pred CCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHh---c-ccchhheeeECCcHHHHHHHHhhhccCCeEEEEcc
Confidence 3467888888888765422554433432222 24455542 2 23567899999999999999999987554444
Q ss_pred --EcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCC-CcccCCCHHHHHHHHHHHHhC
Q 022213 136 --LPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGN-PCGNVFTYHHLQEIAEMARKL 212 (301)
Q Consensus 136 --~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~n-ptG~~~~~~~l~~i~~~~~~~ 212 (301)
++ ++.+.....++..|.+++++.... ..+..+++.++.+++..++-.+-+| +.-..++ .++++++|+++
T Consensus 115 ~lV~-gg~~~v~d~~~~aG~~l~EvG~tn----~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~ 186 (395)
T COG1921 115 ELVE-GGAFRVPDIIRLAGAKLVEVGTTN----RTHLKDYELAINENTALLLKVHSSNYGFTGMLS---EEELVEIAHEK 186 (395)
T ss_pred cccc-CCCCChhHHHHHcCCEEEEecccC----cCCHHHHHHHhccCCeeEEEEeecccccccccc---HHHHHHHHHHc
Confidence 33 577788999999999999886532 2678899999999998876655544 3333455 67788889999
Q ss_pred CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213 213 RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 213 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
|+++|+|.+..............-..+.+ ++++|--|.++ |-+-|.+++. .+++.++++.
T Consensus 187 ~lpvivD~aSg~~v~~e~~l~~~la~GaD---LV~~SgdKllg--GPqaGii~Gk--------KelI~~lq~~ 246 (395)
T COG1921 187 GLPVIVDLASGALVDKEPDLREALALGAD---LVSFSGDKLLG--GPQAGIIVGK--------KELIEKLQSH 246 (395)
T ss_pred CCCEEEecCCccccccccchhHHHhcCCC---EEEEecchhcC--CCccceEech--------HHHHHHHHhh
Confidence 99999999998765422222222222222 88889999854 6668888873 3688888765
No 355
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.90 E-value=1.3e-07 Score=87.51 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=127.4
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...+++.++|+..|.-... .-...+.+.+++++++++... +.......+.+..+++.+....+ ...+.++++++
T Consensus 38 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~~--~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~s 112 (429)
T PRK06173 38 ITLKDGRRLIDGMSSWWAAL-HGYNHPRLNAAATNQLAKMSH--IMFGGFTHEPAVELAQKLLEILP--PSLNKIFFADS 112 (429)
T ss_pred EEcCCCCEEEEccchHHhcc-CCCCCHHHHHHHHHHHHhcCC--ccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCC
Confidence 33456889999977621110 112347888899988874321 11111123444556666654222 13468999999
Q ss_pred HHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCCCC-----C
Q 022213 116 CKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERNWE-----V 168 (301)
Q Consensus 116 ~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~-----~ 168 (301)
+++|++.+++.... +| .+|+...-+|++........ +. ....++... ..+. .
T Consensus 113 GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~ 191 (429)
T PRK06173 113 GSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPS-IKFGEEWNDE 191 (429)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCC-cccchhHHHH
Confidence 99999999887642 23 57888888888742111111 10 011222110 0000 1
Q ss_pred CHHHHHhhccc--CccEEEEcCC--CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213 169 DLDAVEALADK--NTAAMVIINP--GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP 243 (301)
Q Consensus 169 ~~~~l~~~~~~--~~~~v~l~~p--~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~ 243 (301)
+++.+++.+.. ...+.++.-| +.-.|.. .+.+.++++.++|++||+++|+||++..+...+..+ ....++-..+
T Consensus 192 ~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~gv~PD 270 (429)
T PRK06173 192 AIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLF-ALEHAGVVPD 270 (429)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcch-HHHhcCCCCC
Confidence 35556666642 2344455555 5555665 688999999999999999999999997754333321 1222332333
Q ss_pred EEEEecCcccCCCCc-ceeEEEEee
Q 022213 244 VITLGSISKRWLVPG-WRFGWLVTN 267 (301)
Q Consensus 244 vi~~~s~SK~~~~~G-~rvG~~~~~ 267 (301)
++ +++|.++ .| +-+|-++++
T Consensus 271 iv---~~gK~l~-gG~~p~~a~~~~ 291 (429)
T PRK06173 271 IM---CIGKALT-GGYLTLSATITT 291 (429)
T ss_pred EE---Eeehhhh-CCccccceEEec
Confidence 44 3899974 55 356777653
No 356
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=98.89 E-value=3.2e-08 Score=89.45 Aligned_cols=223 Identities=17% Similarity=0.160 Sum_probs=120.4
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC------CCCCCHHHHHHHHHHHhhhCCCCCCCCCEE---E
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA------TNSGIPPARRAIADYLSRDLPYKLSADDVY---V 112 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~------~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~---~ 112 (301)
..-|+|-..+. .+.+.+.+++...+.+.-...|+ -...+.++.+...+...+-++ +++++-. =
T Consensus 20 ~~~l~LiaSEN------~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~--~~~~~w~anvq 91 (399)
T PF00464_consen 20 RSTLNLIASEN------YMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFG--AEPKEWYANVQ 91 (399)
T ss_dssp HHSEE-CTT-----------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT---STTTEEEE--
T ss_pred hcCccccCccc------ccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhC--CCcccceEEee
Confidence 56688866653 23456767666555432111121 111233444333344433343 3433322 2
Q ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH---HHH-------HhcCceEEEeecCCCCCCCCCHHHHHhhccc-Cc
Q 022213 113 TLGCKQAVEVILSVLARPGANVLLPRPGWPYYE---GIA-------QRKQVEVRHFDLLPERNWEVDLDAVEALADK-NT 181 (301)
Q Consensus 113 t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~---~~~-------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 181 (301)
..+++.|...++.+|++|||+|+..++...++. ... .....+.+.++++++ ...+|.+++++.+++ ++
T Consensus 92 p~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~kP 170 (399)
T PF00464_consen 92 PHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPD-TGLIDYDELEKLAKEHKP 170 (399)
T ss_dssp -SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH--
T ss_pred cCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecC-CCeECHHHHHHHHhhcCC
Confidence 567789999999999999999998877665432 111 123346777777654 467999999998865 77
Q ss_pred cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEecCcccCCCCcce
Q 022213 182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWR 260 (301)
Q Consensus 182 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~r 260 (301)
++|++..-..|- .++ ++++.++|.+.|.+++.|-++.. ++-++..+.|+.. . + |+.+|++|+ ++|-|
T Consensus 171 klIi~G~S~y~~--~~d---~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-A-D---vvt~sThKt--l~GPr 238 (399)
T PF00464_consen 171 KLIICGASSYPR--PID---FKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-A-D---VVTGSTHKT--LRGPR 238 (399)
T ss_dssp SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-S-S---EEEEESSGG--G-SSS
T ss_pred CEEEECchhccC--ccC---HHHHHHHHHhcCcEEEecccccccceehheecCcccc-c-e---EEEeecccc--ccccC
Confidence 877765444332 234 67777778899999999999873 4445555555543 2 2 889999999 57888
Q ss_pred eEEEEee------CCCCcccchhHHHHHHhh
Q 022213 261 FGWLVTN------DPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 261 vG~~~~~------~~~~~~~~~~~~~~~~~~ 285 (301)
-|.++.. +.....-++++.+++.+.
T Consensus 239 ggiI~~~~~~~~~~~~~~~~~~~l~~~I~~a 269 (399)
T PF00464_consen 239 GGIILTNKGSKNVDKKGKEIDEELAEKIDSA 269 (399)
T ss_dssp -EEEEES-SEEEE-TTS-EEEHHHHHHHHHH
T ss_pred ceEEEEcCCccccCCcccccHHHHHHHhccc
Confidence 8888875 011110124677777664
No 357
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.88 E-value=6.7e-08 Score=95.06 Aligned_cols=174 Identities=17% Similarity=0.158 Sum_probs=118.3
Q ss_pred CCCCC---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC-CHHHHHHHHHHHhc----C---C-CCEEEEcCCCCcchH
Q 022213 78 NCYAT---NSGIPPARRAIADYLSRDLPYKLSADDVYVTL-GCKQAVEVILSVLA----R---P-GANVLLPRPGWPYYE 145 (301)
Q Consensus 78 ~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~-g~~~al~~~~~~l~----~---~-gd~Vl~~~p~~~~~~ 145 (301)
+-|.| .+|..++..++.+++.+-.| .+.+.+-. ++.++-.+.+.++. . + .++|+++.-.|....
T Consensus 530 hPyqp~e~sQG~lq~i~elq~~l~eLtG----md~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNp 605 (954)
T PRK12566 530 HPFAPREQAEGYRAMIDELEAWLCAITG----FDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNP 605 (954)
T ss_pred CCCCchhhhcCHHHHHHHHHHHHHHHHC----CCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCH
Confidence 46776 77887777777777766433 33344444 44444445555543 1 2 367889988886555
Q ss_pred HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCC
Q 022213 146 GIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY 222 (301)
Q Consensus 146 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y 222 (301)
..+...|++++.++.+.+ ..+|+++|++.++ .++.++.+++|++-.+.. +.+++|+++|+++|+++++|.++
T Consensus 606 asa~~~GieVv~Vp~D~~--G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e---~~V~eI~~iah~~Galv~vDgA~ 680 (954)
T PRK12566 606 ASAQMAGMRVVIVECDPD--GNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYE---EGIREICEVVHQHGGQVYMDGAN 680 (954)
T ss_pred HHHHHCCCEEEEeccCCC--CCcCHHHHHHHhhccCCCEEEEEEEecCcCceec---chHHHHHHHHHHcCCEEEEEeeC
Confidence 567788999999998643 3699999999986 456667778888766553 44999999999999999999998
Q ss_pred cccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEEEe
Q 022213 223 GHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWLVT 266 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~~~ 266 (301)
..-.. .......++-+ |+.+++.|+|+.| |.-+|.+.+
T Consensus 681 ~~a~~---~l~~Pg~~GAD---i~~~s~HKtf~~P~G~GGP~vG~iav 722 (954)
T PRK12566 681 LNAQV---GLARPADIGAD---VSHMNLHKTFCIPHGGGGPGMGPIGV 722 (954)
T ss_pred hhhcc---CCCChhhcCCC---EEEecCCcccCcCccCCCCccchhhh
Confidence 63222 11212333333 8889999988644 555666554
No 358
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=98.87 E-value=6.8e-08 Score=89.55 Aligned_cols=213 Identities=15% Similarity=0.120 Sum_probs=120.8
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+...++..+||+..|.-... --...+.+.+++.++++... .|... ...+-.+++.+.+..+ ..+.++++++
T Consensus 42 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~q~~~~~--~~~~~---~~~~~~la~~l~~~~p---~~~~v~f~~s 112 (431)
T PRK06209 42 VWDVDGNEYIEYGMGLRAVG-LGHAYPPVVEAVREALQDGC--NFTRP---SAIELDAAESFLELID---GADMVKFCKN 112 (431)
T ss_pred EEeCCCCEEEEccccccchh-cCCCCHHHHHHHHHHHHhCc--CCCCC---CHHHHHHHHHHHHhCC---ccceEEEecC
Confidence 33456888999987732111 12245688899999987533 23221 2233344554443221 1368999999
Q ss_pred HHHHHHHHHHHhcC-CC-CEEEEc-CCCCcchHHHH-----HhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEE
Q 022213 116 CKQAVEVILSVLAR-PG-ANVLLP-RPGWPYYEGIA-----QRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMV 185 (301)
Q Consensus 116 ~~~al~~~~~~l~~-~g-d~Vl~~-~p~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~ 185 (301)
+++|.+.+++.... .| .+|+.. .-+|.++.... ...+......+. ...-.-.|++.+++.++. +..+.+
T Consensus 113 GseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~aav 191 (431)
T PRK06209 113 GSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSAL-TVTFRYNDIASLEALFEDHPGRIACV 191 (431)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcc-ccccCCCCHHHHHHHHHhCCCCEEEE
Confidence 99999999986642 23 455544 22332211000 000100000000 000001378888887753 234455
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc-cCCCCCEEEEecCcccCCCCcceeEEE
Q 022213 186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL-FGSIVPVITLGSISKRWLVPGWRFGWL 264 (301)
Q Consensus 186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~-~~~~~~vi~~~s~SK~~~~~G~rvG~~ 264 (301)
+.-|- .|...+.+.+++|.++|++||+++|+||++..+.+.. ..... ++-..++ .+++|.++ .|+.+|.+
T Consensus 192 i~Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~---~g~~~~~gv~PDi---~t~gK~lg-gG~p~~av 262 (431)
T PRK06209 192 ILEPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM---RGAQKLYGIVPDL---SCFGKALG-NGFAVSAL 262 (431)
T ss_pred EEccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc---chhhHHhCCCcce---eeehhhhc-CCcccEEE
Confidence 55553 3447778899999999999999999999987654321 11111 2222233 47899976 46888999
Q ss_pred Eee
Q 022213 265 VTN 267 (301)
Q Consensus 265 ~~~ 267 (301)
+++
T Consensus 263 ~~~ 265 (431)
T PRK06209 263 AGK 265 (431)
T ss_pred EEH
Confidence 884
No 359
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=98.83 E-value=6.2e-07 Score=83.72 Aligned_cols=224 Identities=19% Similarity=0.137 Sum_probs=129.2
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcC
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-DDVYVTL 114 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~ 114 (301)
+...+++.+||+..|--... --..++.+.+++++++..... +.......+.+..+|+.+....+..... ..+++++
T Consensus 52 l~D~dG~~ylD~~~g~~~~~-lGH~~p~v~~Ai~~q~~~~~~--~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~ 128 (459)
T PRK06931 52 VTDVEGNQYLDCLAGAGTLA-LGHNHPDVLQSIQDVLTSGLP--LHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGP 128 (459)
T ss_pred EEeCCCCEEEEcccchhhcc-CCCCCHHHHHHHHHHHhhhcc--ccccccCCHHHHHHHHHHHHhCCCccccceEEEeCC
Confidence 33456889999988732211 123456888999988864221 1111122456666777775532211011 1346668
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCCCC--CC----CCHHHH
Q 022213 115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPERN--WE----VDLDAV 173 (301)
Q Consensus 115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~--~~----~~~~~l 173 (301)
++++|.+.+++.... ..++|+...-+|++.......... .+..++...... +. -+.+.+
T Consensus 129 SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (459)
T PRK06931 129 SGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKAL 208 (459)
T ss_pred CcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHH
Confidence 999999999987642 346898888899876544432211 122222211000 00 012222
Q ss_pred ----Hhhccc-----CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213 174 ----EALADK-----NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV 242 (301)
Q Consensus 174 ----~~~~~~-----~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~ 242 (301)
++.+.. ...+.++.-| ..-.|. ..+.+.++++-++|++||+++|.||+...+...+. ......++-.+
T Consensus 209 ~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~-~~a~~~~gv~P 287 (459)
T PRK06931 209 TYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGK-MFAFEHAGIEP 287 (459)
T ss_pred HHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCch-HHHhhhcCCCC
Confidence 333321 2234455555 333455 45788999999999999999999999998754443 22233344444
Q ss_pred CEEEEecCcccCCCCcceeEEEEee
Q 022213 243 PVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 243 ~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
+++ +++|.++ .|+.+|.+++.
T Consensus 288 Div---t~gK~l~-gG~Pi~av~~~ 308 (459)
T PRK06931 288 DII---VMSKAVG-GGLPLAVLGIK 308 (459)
T ss_pred CEE---Eeccccc-CCcceeeeeeH
Confidence 566 5699965 57999987763
No 360
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.1e-07 Score=81.67 Aligned_cols=203 Identities=16% Similarity=0.136 Sum_probs=136.1
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC------CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK------FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT 113 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t 113 (301)
++.+++||+..+.. .|...+++.+.+...++.-. -.=|++-.=+.++.+.||+|+ ..++-++-
T Consensus 92 ~G~~~~N~aS~NfL---~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~--------G~E~aivY 160 (467)
T KOG1358|consen 92 DGKDVLNFASANFL---GLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM--------GTEDAIVY 160 (467)
T ss_pred cCceeecccchhhh---hhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhh--------CCcceeee
Confidence 57889999988853 45666778887777776311 112555444678999999998 33444444
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCc------------
Q 022213 114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT------------ 181 (301)
Q Consensus 114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------ 181 (301)
+-+..++..++.++++.||.|.+.+-........++...-.+.++.. .|.+.++..+.+++
T Consensus 161 s~gF~ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkh-------ndm~~lerll~E~~~~~~K~~k~~~~ 233 (467)
T KOG1358|consen 161 SYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKH-------NDMEDLERLLPEQEDEDQKNPKKALT 233 (467)
T ss_pred ccccchhhhcchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecC-------CCHHHHHHhccCcchhhhhccccccc
Confidence 45578888999999999999998877766666655655555555543 45666666543211
Q ss_pred cE-EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC--CCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213 182 AA-MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS--IPYTPMGLFGSIVPVITLGSISKRWLVPG 258 (301)
Q Consensus 182 ~~-v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~--~~~~~~~~~~~~~~vi~~~s~SK~~~~~G 258 (301)
+. +++..---++|.+.+ +.+|+++..||.+.+|.||.|+.-..+. .........+..+--++++|++-+++..|
T Consensus 234 Rrfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G 310 (467)
T KOG1358|consen 234 RRFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG 310 (467)
T ss_pred eEEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC
Confidence 22 334445567999999 8889999999999999999999765542 22222222221111288888888876666
Q ss_pred ceeEEEEe
Q 022213 259 WRFGWLVT 266 (301)
Q Consensus 259 ~rvG~~~~ 266 (301)
|+.++
T Consensus 311 ---gFc~G 315 (467)
T KOG1358|consen 311 ---GFCAG 315 (467)
T ss_pred ---ceeec
Confidence 77766
No 361
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=98.79 E-value=4.3e-07 Score=81.55 Aligned_cols=196 Identities=14% Similarity=0.066 Sum_probs=120.1
Q ss_pred CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--------CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213 43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--------FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL 114 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--------~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~ 114 (301)
..++|+.| |. ..|+.|.+++++.+-+.. ..++.+ -..++.+.+.+.+++.++++-+.+=+++..
T Consensus 4 ~~~nF~aG-Pa-----~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~--~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~G 75 (364)
T PRK12462 4 NQLNFSGG-PG-----ALPDTVLEQVRQAVVELPETGLSVLGMSHRSS--WFSSLLAQAEADLRDLLGIPDEYGVVFLQG 75 (364)
T ss_pred ccceecCC-Cc-----CCCHHHHHHHHHHHhcccccCccccccccccH--HHHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence 36788888 32 456788888876665321 112221 123444444445554444322222345666
Q ss_pred CHHHHHHHHHHHhcCCCCEEE-EcCCCCcc--hHHHHHhcCceEEEeecCCCCC--CCCCHHHHHhhcccCccEEEEcCC
Q 022213 115 GCKQAVEVILSVLARPGANVL-LPRPGWPY--YEGIAQRKQVEVRHFDLLPERN--WEVDLDAVEALADKNTAAMVIINP 189 (301)
Q Consensus 115 g~~~al~~~~~~l~~~gd~Vl-~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p 189 (301)
|+|.+++++...|+.+||+++ +..-++.+ +...++.+| ++..+......+ ..++++.++ ++++.+.+.+++-
T Consensus 76 ggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~~d~~~v~~t~N 152 (364)
T PRK12462 76 GSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAELD--WDARAPFRHYVSN 152 (364)
T ss_pred cHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHhc--cCCCCcEEEEccC
Confidence 799999999999999999765 44444443 345556666 444332211112 234555552 2334677778888
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
...||+..+ ++.+.++.++|+|.+...+. .+..+..++ +++.|.-|++|-|| ++.+++++
T Consensus 153 ETstGv~~~--------~~~~~~~~llvvD~sS~~~s----~pid~~~~d-----vi~agsQKnlgP~G--ltvvivs~ 212 (364)
T PRK12462 153 ETVEGLQFP--------DAAGLPDSPLIADMSSDFMS----RPFDVEAYG-----MVYAHAQKNLGPAG--VTVAIIRR 212 (364)
T ss_pred CCCceEecC--------cccccCCCeEEEEcCchhhC----CCCChHHcc-----EEEeeccccCCCCc--eEEEEECH
Confidence 889999986 22334689999999988733 444555552 88889999999777 66777654
No 362
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.7e-08 Score=89.93 Aligned_cols=212 Identities=15% Similarity=0.139 Sum_probs=133.2
Q ss_pred CCChHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213 58 FRTAVEAEDAIVDAVRS--GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL 135 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl 135 (301)
.++.+.+.+++.+.--. ..-..-+...-+.++.+.+|+|+ | .++-+++.-| .......+-+++.||--|+
T Consensus 154 g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~----g---~e~a~vF~mG-f~TNs~~~p~l~~~gsLIi 225 (519)
T KOG1357|consen 154 GPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFL----G---VEDAIVFSMG-FATNSMNIPSLLGKGSLII 225 (519)
T ss_pred CcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhc----C---CcceEEEecc-ccccccCcceeecCCccee
Confidence 35556666666543211 00111111122345666666665 2 2345555544 5556667778889999999
Q ss_pred EcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------------CccE-EEEcCCCCCcccCCCHHHH
Q 022213 136 LPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------------NTAA-MVIINPGNPCGNVFTYHHL 202 (301)
Q Consensus 136 ~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~-v~l~~p~nptG~~~~~~~l 202 (301)
-.+..|.+...-++..|+.+..... -|...||+.+++ ..+. +++..-...-|.+.. +
T Consensus 226 SDelNHaSi~~GaRLSgAtiRVfkH-------Ndm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---L 295 (519)
T KOG1357|consen 226 SDELNHASLITGARLSGATTRVFRH-------NDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---L 295 (519)
T ss_pred eccccchheeccccccCceEEEEec-------CCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---c
Confidence 9999999888888888888877765 244455554431 1233 333444556777877 8
Q ss_pred HHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc---CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213 203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF---GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII 279 (301)
Q Consensus 203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~---~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~ 279 (301)
.+++.+++++..+++.||+++--..+. .-..+..+ ++.+-.|.+++|+|+|++.| ||+.+++ +++
T Consensus 296 p~vvalkkkykayl~lDEAHSiGA~g~-tGrgvce~~g~d~~dvDImMGtftKSfga~G---Gyiagsk--------~li 363 (519)
T KOG1357|consen 296 PEVVALKKKYKAYLYLDEAHSIGAMGA-TGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGSK--------ELI 363 (519)
T ss_pred HHHHHhhccccEEEEeeccccccccCC-CCcceeeccCCCchhheeecceehhhccccc---ceecCcH--------HHH
Confidence 888899999999999999999765532 11122222 22233599999999999998 9998854 488
Q ss_pred HHHHhhhcc----cCCCccccccc
Q 022213 280 DSIKDCLSI----YSDIPTFIQVC 299 (301)
Q Consensus 280 ~~~~~~~~~----~~~~~~~~q~~ 299 (301)
+.++..... .+.++++.|+.
T Consensus 364 d~lrt~s~~~~yat~~sppvaqq~ 387 (519)
T KOG1357|consen 364 DYLRTPSPSALYATSLSPPVAQQI 387 (519)
T ss_pred hhhccCCCceeecccCChHHHHHH
Confidence 888776431 22445555543
No 363
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.79 E-value=2.7e-07 Score=92.44 Aligned_cols=161 Identities=18% Similarity=0.219 Sum_probs=114.4
Q ss_pred CCCCCCCC-----C----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CC--CCEEEEcCCCCcch
Q 022213 77 FNCYATNS-----G----IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RP--GANVLLPRPGWPYY 144 (301)
Q Consensus 77 ~~~Y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~--gd~Vl~~~p~~~~~ 144 (301)
+..|.|-+ | +.++++.++++. +++..|+.+..++|.+.+.++.++. .+ +|+|++++..|+..
T Consensus 105 ~t~ytPyQ~EisQG~Leal~~~Qt~la~Lt------G~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~ 178 (954)
T PRK05367 105 YTAYTPYQPEISQGRLEALLNFQTMVADLT------GLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQT 178 (954)
T ss_pred hhccCCCChHHHHHHHHHHHHHHHHHHHHH------CCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHH
Confidence 55676633 3 345666677776 5788899999999999998888873 44 49999999999976
Q ss_pred HHH----HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213 145 EGI----AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220 (301)
Q Consensus 145 ~~~----~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~ 220 (301)
... ++..|++++.++... + .+ ++++.++++.+| |-+|.+.+ +++|+++|+++|+++++|.
T Consensus 179 ~~v~~t~a~~~G~ev~~~~~~~--d--~~--------~~~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda 242 (954)
T PRK05367 179 LDVLRTRAEPLGIEVVVGDAAK--A--LD--------HDDVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAA 242 (954)
T ss_pred HHHHHHHHHhCCCEEEEecCcc--C--CC--------cccEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEe
Confidence 544 356799999887632 1 11 223444555555 67999998 9999999999999999987
Q ss_pred CCcccccCCCCCCCccccCCCCCEEEEecCccc-----CCCCcceeEEEEeeC
Q 022213 221 VYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR-----WLVPGWRFGWLVTND 268 (301)
Q Consensus 221 ~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~-----~~~~G~rvG~~~~~~ 268 (301)
....+... .+...++-+ |++++..|+ ||.|| .|++.+.+
T Consensus 243 ~~~Al~~l----~~pge~GaD---i~vgs~qkfg~P~g~GGP~--aGflavr~ 286 (954)
T PRK05367 243 DLLALTLL----TPPGEMGAD---IAVGSAQRFGVPMGFGGPH--AAYFAVRD 286 (954)
T ss_pred hhhhccCC----CChhhcCCC---EEEeeCcccCCCCCCCCCC--EEEEEECH
Confidence 55333221 123344433 888899997 66665 89998843
No 364
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.74 E-value=4.4e-07 Score=90.76 Aligned_cols=180 Identities=18% Similarity=0.160 Sum_probs=117.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCC-----CC----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-
Q 022213 59 RTAVEAEDAIVDAVRSGKFNCYATN-----SG----IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA- 128 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~Y~~~-----~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~- 128 (301)
..|..+.+.+.+... .+..|+|- +| +.++++.++++. +++++++.++.++|.+.+.++.++.
T Consensus 116 ~~P~~v~~~i~~~~~--~~TaytPYqaEisQG~lqal~~~Qt~ia~Lt------G~~~anaSL~d~aTAaaea~~~a~~~ 187 (993)
T PLN02414 116 HVPPVILRNILENPG--WYTQYTPYQAEIAQGRLESLLNYQTMITDLT------GLPMSNASLLDEGTAAAEAMAMCNNI 187 (993)
T ss_pred cCCHHHHHHHHhChH--HHhhcCCCchHHHHHHHHHHHHHHHHHHHHh------CCChhhEeecCChHHHHHHHHHHHhc
Confidence 456666566554332 23345543 23 456777888887 6789999999999999999988773
Q ss_pred CCC--CEEEEcCCCCcchHHHH----HhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213 129 RPG--ANVLLPRPGWPYYEGIA----QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL 202 (301)
Q Consensus 129 ~~g--d~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l 202 (301)
++| |+|++++..|+.+...+ +..|++++.++.... + ...+....+++..| |-+|.+.+ +
T Consensus 188 ~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~-----~------~~~~~v~~vlvq~P-~~~G~v~d---v 252 (993)
T PLN02414 188 LKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF-----D------YSSGDVCGVLVQYP-ATDGEVLD---Y 252 (993)
T ss_pred ccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----c------cccCceEEEEEecC-CCCeEEcC---H
Confidence 444 88999999999865444 456888888875221 1 11112333333333 45999988 9
Q ss_pred HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC---CCCcceeEEEEeeC
Q 022213 203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW---LVPGWRFGWLVTND 268 (301)
Q Consensus 203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~---~~~G~rvG~~~~~~ 268 (301)
++|+++|+++|+++++ .+... ... ...+...++-+ |++++..|+. |..|-+.|++++..
T Consensus 253 ~~I~~~ah~~GaL~iV-aad~l-al~--~l~~pge~GAD---i~vgsgqKwg~P~G~GGP~aGflavr~ 314 (993)
T PLN02414 253 AEFVKNAHANGVKVVM-ATDLL-ALT--MLKPPGEWGAD---IVVGSAQRFGVPMGYGGPHAAFLATSQ 314 (993)
T ss_pred HHHHHHHHHcCCEEEE-EECHH-Hhc--CCCCHhhccCc---EEEECCCccccCCCCCCCCeeEEEECH
Confidence 9999999999999999 44332 111 11123344433 8889999984 12355599998854
No 365
>PLN02452 phosphoserine transaminase
Probab=98.73 E-value=7.9e-07 Score=80.43 Aligned_cols=196 Identities=12% Similarity=0.045 Sum_probs=122.9
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--------CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--------FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT 113 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--------~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t 113 (301)
..+++|+-| | ...|+.|++++.+.+-+.. ..+..+ -..++.+.+.+.+.+-++++-+.+-+++.
T Consensus 6 ~~~~~f~pG-P-----~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~--~f~~i~~~~~~~L~~l~~~p~~y~v~~l~ 77 (365)
T PLN02452 6 GRVFNFSAG-P-----ATLPANVLAKAQAELYNWEGSGMSVMEMSHRGK--EFLSIIQKAEADLRELLDIPDNYEVLFLQ 77 (365)
T ss_pred CceEeeeCC-C-----CCCCHHHHHHHHHHHhcccccCccccccCCCch--HHHHHHHHHHHHHHHHhCCCCCceEEEEe
Confidence 457888877 3 3567889898887753211 111211 12344444444554444432222335677
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEcCCCCcc--hHHHHHhcCceEEEeecCCCCC--CCCCHHHHHhhcccCccEEEEcCC
Q 022213 114 LGCKQAVEVILSVLARPGANVLLPRPGWPY--YEGIAQRKQVEVRHFDLLPERN--WEVDLDAVEALADKNTAAMVIINP 189 (301)
Q Consensus 114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p 189 (301)
.|+|.++++++..++.+||++++...+..+ +...++.+|...+.... +..+ ..+++++++. +++.+.+.+++-
T Consensus 78 Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~v~~~hn 154 (365)
T PLN02452 78 GGASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASG-KDEKYTKIPSVSEWEL--TPDAKFVHICAN 154 (365)
T ss_pred CccHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEec-CCCCCCCCCChHHcCC--CCCCcEEEECCC
Confidence 999999999999999999999988776664 45666777764333321 1121 1356666532 335677888888
Q ss_pred CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213 190 GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268 (301)
Q Consensus 190 ~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~ 268 (301)
...||+. .+ +.++. ++++|+|.+.+... .+..+..++ +.+.|..|.+|.+| +|.++++.
T Consensus 155 ETstGv~~~~---~~~i~------~~~lvVDa~Ss~g~----~pidv~~~~-----v~~~saqK~lGP~G--l~~v~vr~ 214 (365)
T PLN02452 155 ETIHGVEFKD---YPDVG------NVPLVADMSSNFLS----KPVDVSKYG-----VIYAGAQKNVGPSG--VTIVIIRK 214 (365)
T ss_pred CCCCcEecCc---ccccC------CCeEEEECCccccC----cccCHHHcC-----EEEEecccccCCCC--eEEEEEcH
Confidence 8899996 44 44442 37999999998733 344444443 34469999998888 77777744
No 366
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=98.73 E-value=4.4e-07 Score=82.63 Aligned_cols=231 Identities=20% Similarity=0.171 Sum_probs=132.0
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
..+++.+||-..|-=-.. .---.+++.++++++++.-.+....-..+.+ -..+|+.|.+.-+ +-+-++|++++|+|
T Consensus 40 d~~G~r~lDg~sg~W~~~-~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P--a~~LA~~L~~~aP-~~~l~~vFf~~sGS 115 (449)
T COG0161 40 DIDGRRYLDGMSGLWCVN-HGHGRPEIAEAIKKQLDKLPHVMFGGFTHEP--AIELAEKLAELAP-EGGLDHVFFTDSGS 115 (449)
T ss_pred eCCCCEEEecccHHHHhh-cCcCCHHHHHHHHHHHHhCCchhhcccCCch--HHHHHHHHHHhCC-CCCccEEEEeCCch
Confidence 345777777665510000 0112367889999988742211111111223 3334444433211 12256899999999
Q ss_pred HHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhcC--------------ceEEEeecCC---C---CCCC--
Q 022213 118 QAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRKQ--------------VEVRHFDLLP---E---RNWE-- 167 (301)
Q Consensus 118 ~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g--------------~~~~~~~~~~---~---~~~~-- 167 (301)
+|++.+++.... |. .+++.-..+|++-.-.....+ .....++... . ..+.
T Consensus 116 eAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~ 195 (449)
T COG0161 116 EAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEE 195 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHH
Confidence 999999987642 33 348888888875311111111 1122222211 0 0111
Q ss_pred --CCHHHHHhhccc---CccEEEEcCC--CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 168 --VDLDAVEALADK---NTAAMVIINP--GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 168 --~~~~~l~~~~~~---~~~~v~l~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
-..++|++.+.. .+.+.++.-| .--.|+.+ ++..++++-++|++||+++|.||+-..|...++-|.. ..++
T Consensus 196 ~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~-e~~g 274 (449)
T COG0161 196 FAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFAC-EHAG 274 (449)
T ss_pred HHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhh-hhcC
Confidence 224566666644 4566677777 33367754 5568999999999999999999999998877654422 2233
Q ss_pred CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213 240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
-.++++ +++|.+...-+.+|.+++++ ++.+.+..
T Consensus 275 i~PDi~---~~aKGLT~GY~Pl~a~l~~~--------~I~~~~~~ 308 (449)
T COG0161 275 IVPDIL---CLAKGLTGGYLPLSAVLTSD--------RIYEAFSD 308 (449)
T ss_pred CCCCee---eecccccccchhhHhHhhhH--------HHHHHHhc
Confidence 334556 77998766666777666643 35555544
No 367
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=98.70 E-value=7.5e-07 Score=87.87 Aligned_cols=216 Identities=19% Similarity=0.119 Sum_probs=127.2
Q ss_pred CeeeccCCCCCCCCCCC--ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213 43 PVVPLGYGDPTAFPCFR--TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120 (301)
Q Consensus 43 ~~i~l~~g~p~~~p~~~--~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al 120 (301)
.++|+..|.-.. .+. ..+++.+++++++.+-. .+.......+....+|+.|.+.-+ .-..++|++++++++|+
T Consensus 366 ~ylD~~sg~w~~--~lG~h~~p~I~~Ai~~Qa~rl~--hv~~~~~~hepa~~LAe~L~~~~~-~~~l~rVffs~sGSeAv 440 (817)
T PLN02974 366 QQFDACASWWTQ--GPDPTLQPELARAVAYAAGRYG--HVMFPENVHEPALRAAELLLGGPG-KGWASRVFFSDNGSTAI 440 (817)
T ss_pred eEEEcchhHHHh--CCCcCCCHHHHHHHHHHHhhCC--ccccCccCCHHHHHHHHHHHhccC-CCCCCEEEECCchHHHH
Confidence 566766651110 122 36789999999887422 222212234566667777755211 00135899999999999
Q ss_pred HHHHHHhcC-----C----------------CCEEEEcCCCCcchHHHHHhcCc----------e-----EEEeecC---
Q 022213 121 EVILSVLAR-----P----------------GANVLLPRPGWPYYEGIAQRKQV----------E-----VRHFDLL--- 161 (301)
Q Consensus 121 ~~~~~~l~~-----~----------------gd~Vl~~~p~~~~~~~~~~~~g~----------~-----~~~~~~~--- 161 (301)
+.+++...+ . ..+|+...-+|++....+...+. . ..+++..
T Consensus 441 E~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~ 520 (817)
T PLN02974 441 EVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVG 520 (817)
T ss_pred HHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccc
Confidence 998886521 1 24688888888864322222211 0 0011100
Q ss_pred ----------CCC----------CCC-----CC------------HHHHHhhcc-------cCccEEEEcCC--CCCccc
Q 022213 162 ----------PER----------NWE-----VD------------LDAVEALAD-------KNTAAMVIINP--GNPCGN 195 (301)
Q Consensus 162 ----------~~~----------~~~-----~~------------~~~l~~~~~-------~~~~~v~l~~p--~nptG~ 195 (301)
+.. .|. ++ .+.+++.+. .+..+.++.-| +.-.|+
T Consensus 521 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGm 600 (817)
T PLN02974 521 MRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGM 600 (817)
T ss_pred cccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCc
Confidence 000 000 00 134555553 13345566666 455677
Q ss_pred CC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213 196 VF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG-WRFGWLVTND 268 (301)
Q Consensus 196 ~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~ 268 (301)
.. +.+.++++.++|++||+++|.||++..|...+.-+ ....++-..+++ +++|.++ .| +.+|.++++.
T Consensus 601 i~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~f-a~e~~gv~PDIi---~~gKgLt-gG~~Plaa~l~~~ 670 (817)
T PLN02974 601 LLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVES-AWELLGCKPDIA---CYAKLLT-GGLVPLAATLATE 670 (817)
T ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchh-hHHhcCCCCCEE---eeccccc-CCCCccEEEEEcH
Confidence 64 67899999999999999999999999987665432 233344445566 6799954 56 6999998853
No 368
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=98.69 E-value=8.6e-07 Score=82.26 Aligned_cols=209 Identities=15% Similarity=0.111 Sum_probs=112.9
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHH--HHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAE--DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~--~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
+++.+||+..|--... --...+.+. +++.+++....................+++.+.+..+ .-..+.++++++++
T Consensus 36 dG~~ylD~~~g~~~~~-lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~f~~sGs 113 (431)
T TIGR03251 36 DGRRYLDMFSFFASMA-LGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLG-DPALPHLFFIEGGA 113 (431)
T ss_pred CCCChhhcccChhhcC-CCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcC-CCCcCEEEEeCCcH
Confidence 6788888877732211 112345666 7888877643211111111112333334443333111 11336899999999
Q ss_pred HHHHHHHHHhcC--------C------CCEEEEcCCCCcchHHHHHhc-Cce---EEEeec-------CC-------CCC
Q 022213 118 QAVEVILSVLAR--------P------GANVLLPRPGWPYYEGIAQRK-QVE---VRHFDL-------LP-------ERN 165 (301)
Q Consensus 118 ~al~~~~~~l~~--------~------gd~Vl~~~p~~~~~~~~~~~~-g~~---~~~~~~-------~~-------~~~ 165 (301)
+|++.+++.... . +.+|+...-+|++........ +.. -.+.+. .+ ...
T Consensus 114 EAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 193 (431)
T TIGR03251 114 LAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPN 193 (431)
T ss_pred HHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccc
Confidence 999999987741 1 367998888888764333221 211 000110 00 000
Q ss_pred CC-------CCHHHHHhhcc---cCccEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC
Q 022213 166 WE-------VDLDAVEALAD---KNTAAMVIINPGNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP 234 (301)
Q Consensus 166 ~~-------~~~~~l~~~~~---~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~ 234 (301)
.. .+++.+++.+. .++.++++.-...-.|.. .+.+.+++|.++|++||+++|+||++..+...+.. ..
T Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~-~a 272 (431)
T TIGR03251 194 LDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTA-WA 272 (431)
T ss_pred cchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchH-HH
Confidence 00 12334444443 233444444335555654 57789999999999999999999999987554422 12
Q ss_pred ccccCCCCCEEEEecCcccC
Q 022213 235 MGLFGSIVPVITLGSISKRW 254 (301)
Q Consensus 235 ~~~~~~~~~vi~~~s~SK~~ 254 (301)
...++-..+++ +++|.+
T Consensus 273 ~~~~gv~PDi~---~~gK~~ 289 (431)
T TIGR03251 273 YQQLGVQPDIV---AFGKKT 289 (431)
T ss_pred HHhcCCCCCEE---EecccC
Confidence 22233233445 468884
No 369
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=98.69 E-value=2.5e-07 Score=81.32 Aligned_cols=230 Identities=17% Similarity=0.114 Sum_probs=141.9
Q ss_pred cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213 36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS--GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT 113 (301)
Q Consensus 36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t 113 (301)
+...++++++|+..|.-... .-...+++.+++.+++.. .....|..+ -..++-+.+++.+ .-+-+.++++
T Consensus 44 lyDe~G~ryLD~f~Gi~tvs-lGHchP~v~~a~~kQl~~l~H~t~~~~~~-pi~~~Ae~L~s~~------P~~l~~vfF~ 115 (442)
T KOG1404|consen 44 LYDEEGRRYLDAFGGIVTVS-LGHCHPDVVAAAVKQLKKLYHTTSGYLNP-PIHDLAEALVSKL------PGDLKVVFFV 115 (442)
T ss_pred EEcCCCceeehhhCCeEEEE-cCCCChHHHHHHHHhhhhhEEeeccccCC-cHHHHHHHHHHhC------CCCceEEEEe
Confidence 44556888888888743221 124567888888888753 223456553 3567777777776 2244469999
Q ss_pred CCHHHHHHHHHHHhcC-CC-CEEEEcCCCCcchHHH-HHhcCceEEEeecCCC-------------CC-CCCC-----H-
Q 022213 114 LGCKQAVEVILSVLAR-PG-ANVLLPRPGWPYYEGI-AQRKQVEVRHFDLLPE-------------RN-WEVD-----L- 170 (301)
Q Consensus 114 ~g~~~al~~~~~~l~~-~g-d~Vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~-------------~~-~~~~-----~- 170 (301)
++++||.+++++.... .| -.|+-..-+|++.... +-.-+......+.... .+ |.-+ -
T Consensus 116 nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d 195 (442)
T KOG1404|consen 116 NSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASD 195 (442)
T ss_pred cCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHH
Confidence 9999999999887642 12 2455455566543222 2222322222111100 00 1111 1
Q ss_pred ---HHHHhhcc---cCccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213 171 ---DAVEALAD---KNTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV 242 (301)
Q Consensus 171 ---~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~ 242 (301)
+++++.+. .++.+.++.-+ .---|.+ ++...+++..++|+++|.++|.||+...|...+ .++.+...+-..
T Consensus 196 ~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG-~~wgfe~h~v~P 274 (442)
T KOG1404|consen 196 RYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG-HMWGFESHGVVP 274 (442)
T ss_pred HHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc-ccccccccCCCc
Confidence 33343332 24456666655 4444554 455789999999999999999999999988877 677766665444
Q ss_pred CEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213 243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL 286 (301)
Q Consensus 243 ~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
+++ +++|.. ..|+.+|.++.+. ++.+-+.+..
T Consensus 275 DIv---TmAKgi-GnG~Pl~AVvtt~--------EIa~v~~~~~ 306 (442)
T KOG1404|consen 275 DIV---TMAKGI-GNGFPLGAVVTTP--------EIADVLNQKS 306 (442)
T ss_pred cHH---HHHhhc-cCCCcceeeecCH--------HHHHHHHhcc
Confidence 555 899995 4779999999753 5777776654
No 370
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.68 E-value=8.5e-07 Score=82.52 Aligned_cols=209 Identities=14% Similarity=0.135 Sum_probs=117.0
Q ss_pred cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHH-HhcC--CCCCCCCCCCCHHHHHHHHHHHh----hhCCCCCCCCCE
Q 022213 38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDA-VRSG--KFNCYATNSGIPPARRAIADYLS----RDLPYKLSADDV 110 (301)
Q Consensus 38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~-~~~~--~~~~Y~~~~g~~~lr~~ia~~l~----~~~~~~~~~~~i 110 (301)
..+++.+||+..|.-... .-..++.+.+++.++ .... ....|. ......+++.+. ...+ -+.+.+
T Consensus 54 D~dG~~ylD~~sg~~~~~-lGh~~p~i~~Ai~~q~~~~~l~~~~~~~-----~~~~~~la~~l~~~l~~~~p--~~~~~v 125 (464)
T TIGR00699 54 DVDGNRLLDLYSQISSIP-IGYNNPALLKAAQSPEMATTLINRPALG-----NFPSKDWAKILKEGILKVAP--KGQDQV 125 (464)
T ss_pred eCCCCEEEEccCCHhhhc-CCCCCHHHHHHHHHHHHHHhhcccccCC-----cHHHHHHHHHHHHhHHhhCC--CCcCEE
Confidence 445788999988733211 123457888888874 2211 111121 223344555442 2111 123689
Q ss_pred EEcCCHHHHHHHHHHHhcC--------------------------CC---CEEEEcCCCCcchHHHHHhc-Cce------
Q 022213 111 YVTLGCKQAVEVILSVLAR--------------------------PG---ANVLLPRPGWPYYEGIAQRK-QVE------ 154 (301)
Q Consensus 111 ~~t~g~~~al~~~~~~l~~--------------------------~g---d~Vl~~~p~~~~~~~~~~~~-g~~------ 154 (301)
++++++++|++.+++.... +| .+|+...-+|++........ +..
T Consensus 126 ~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~ 205 (464)
T TIGR00699 126 WTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLD 205 (464)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccC
Confidence 9999999999999987731 11 27998888998754332221 111
Q ss_pred -----EEEeecCCCC-CC-----------CCCHHHHHhhccc--CccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCC
Q 022213 155 -----VRHFDLLPER-NW-----------EVDLDAVEALADK--NTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLR 213 (301)
Q Consensus 155 -----~~~~~~~~~~-~~-----------~~~~~~l~~~~~~--~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~ 213 (301)
...+|..... .+ .-+++.+++.+.+ ...+.++.-| ....|.+. +.+.+++|.++|++||
T Consensus 206 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g 285 (464)
T TIGR00699 206 IPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHN 285 (464)
T ss_pred CCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 1111111000 00 0134556666642 2234444555 45557765 6889999999999999
Q ss_pred CeEEEccCCcccccCCCCCCCccccCCC--CCEEEEecCcccCCCCc
Q 022213 214 VMVVADEVYGHLTFGSIPYTPMGLFGSI--VPVITLGSISKRWLVPG 258 (301)
Q Consensus 214 ~~ii~D~~y~~~~~~~~~~~~~~~~~~~--~~vi~~~s~SK~~~~~G 258 (301)
+++|.||+...+...+. ......++-. .+++ +++|.++..|
T Consensus 286 ~lLI~DEV~tGfGrtG~-~fa~e~~gv~~~PDi~---t~gK~lg~gG 328 (464)
T TIGR00699 286 VAFIVDEVQTGVGATGK-FWAHEHWNLDDPPDMV---TFSKKFQTAG 328 (464)
T ss_pred CEEEEeeeeeCCCCCcc-hhHHHhcCCCCCCCEE---EehhhhccCC
Confidence 99999999987754442 1122222221 3444 6799965444
No 371
>PRK08297 L-lysine aminotransferase; Provisional
Probab=98.67 E-value=8.2e-07 Score=82.58 Aligned_cols=209 Identities=15% Similarity=0.120 Sum_probs=113.6
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHH--HHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAED--AIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~--~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
+++.+||+..|.-... --...+.+.+ ++++++..-.+..........+....+++.+.+..+ .-..+.++++++++
T Consensus 43 dG~~ylD~~~g~~~~~-lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~-p~~~~~v~f~~SGs 120 (443)
T PRK08297 43 TGRRYLDMFTFFASSA-LGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLG-DPELPHLFFVDGGA 120 (443)
T ss_pred CCCEeeecccCHhhhc-CCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcC-CCCCCEEEEeCchH
Confidence 6788888877622111 1123456777 888877531110000001112333445554433211 11236899999999
Q ss_pred HHHHHHHHHhcC--------CC------CEEEEcCCCCcchHHHHHhc-CceEE-----------EeecCCC----CCCC
Q 022213 118 QAVEVILSVLAR--------PG------ANVLLPRPGWPYYEGIAQRK-QVEVR-----------HFDLLPE----RNWE 167 (301)
Q Consensus 118 ~al~~~~~~l~~--------~g------d~Vl~~~p~~~~~~~~~~~~-g~~~~-----------~~~~~~~----~~~~ 167 (301)
||++.+++.... .| .+|+...-+|++....+... +.... .++.... ....
T Consensus 121 EAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (443)
T PRK08297 121 LAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGED 200 (443)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccc
Confidence 999999997731 12 57998998998764333322 11100 0100000 0000
Q ss_pred ---------CCHHHHHhhccc--CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC
Q 022213 168 ---------VDLDAVEALADK--NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP 234 (301)
Q Consensus 168 ---------~~~~~l~~~~~~--~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~ 234 (301)
-+++.+++.+.. +..+.++.-| ....|. ..+.+.+++|.++|++||+++|.||++..+...+.- ..
T Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~-~a 279 (443)
T PRK08297 201 LEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTA-WA 279 (443)
T ss_pred cchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchH-HH
Confidence 023444555532 2334445555 333454 477899999999999999999999999887544421 12
Q ss_pred ccccCCCCCEEEEecCcccC
Q 022213 235 MGLFGSIVPVITLGSISKRW 254 (301)
Q Consensus 235 ~~~~~~~~~vi~~~s~SK~~ 254 (301)
...++-..+++ +++|.+
T Consensus 280 ~~~~gv~PDiv---~~gK~l 296 (443)
T PRK08297 280 YQQLGVRPDIV---AFGKKT 296 (443)
T ss_pred HHhcCCCCCEE---Eecccc
Confidence 22233233455 579985
No 372
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=98.66 E-value=1.2e-06 Score=77.47 Aligned_cols=218 Identities=17% Similarity=0.133 Sum_probs=129.4
Q ss_pred CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213 39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC 116 (301)
Q Consensus 39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~ 116 (301)
.+++.+||+..+.-...+. ...+++.+++.+++..- ....|..-+ .-++.+.+.+.+.+ -..+.|++++++
T Consensus 53 ~~g~EyiD~~ssw~~~~~G-hanpev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~~~-----~~~~rvff~nsG 125 (433)
T KOG1401|consen 53 PDGKEYIDFTSSWAVTILG-HANPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVLGK-----GSAERVFFCNSG 125 (433)
T ss_pred CCcceeeeeccceeccccC-CCCHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHhcccC-----CCccEEEEecCC
Confidence 4578899998884322222 33578888888887642 122222211 12333333333322 277899999999
Q ss_pred HHHHHHHHHHhcC------CCC--EEEEcCCCCcch-HHHHHhcCceEEEeecC---CC--CCCCCCHHHHHhhcccCc-
Q 022213 117 KQAVEVILSVLAR------PGA--NVLLPRPGWPYY-EGIAQRKQVEVRHFDLL---PE--RNWEVDLDAVEALADKNT- 181 (301)
Q Consensus 117 ~~al~~~~~~l~~------~gd--~Vl~~~p~~~~~-~~~~~~~g~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~- 181 (301)
|+|.+.++..-.+ +-+ +|+...-+|++- ...+...+......+.+ ++ ...--|...+++.+..+.
T Consensus 126 TeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~ 205 (433)
T KOG1401|consen 126 TEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKG 205 (433)
T ss_pred cHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCC
Confidence 9999999987643 112 377777777653 23333223222222221 11 011246788888886644
Q ss_pred -cEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213 182 -AAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG 258 (301)
Q Consensus 182 -~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G 258 (301)
.+.++.-| +--.|. ..+++.++.|.+.|+++++++|.||+.-.|...+.. .....+.-.++++ ++.|.+ ..|
T Consensus 206 ~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~-~a~e~~~~~PDI~---t~aK~L-~gG 280 (433)
T KOG1401|consen 206 EIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYG-WAQEYFGVTPDIT---TVAKPL-GGG 280 (433)
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchH-HHHHHhCcCCcce---eehhhc-cCC
Confidence 33344555 434454 456788999999999999999999999986654321 1111222222334 778984 578
Q ss_pred ceeEEEEeeC
Q 022213 259 WRFGWLVTND 268 (301)
Q Consensus 259 ~rvG~~~~~~ 268 (301)
+.+|..++.+
T Consensus 281 lPigA~~v~~ 290 (433)
T KOG1401|consen 281 LPIGATGVRD 290 (433)
T ss_pred ceeEEEeehH
Confidence 9999998844
No 373
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=98.66 E-value=2.6e-06 Score=81.45 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=106.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCC------------------------
Q 022213 75 GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARP------------------------ 130 (301)
Q Consensus 75 ~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~------------------------ 130 (301)
.....|..+.+...+++++.+++.+-+|.+- ..=.+|+|+|+|...++....+.
T Consensus 110 ~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~--~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~ 187 (608)
T TIGR03811 110 GNNVAYESSPATSQMEEEVGKEFATLMGYKN--GWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELL 187 (608)
T ss_pred CCCCccccCchHHHHHHHHHHHHHHHhCCCC--CCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhc
Confidence 3334565555778999999999988777542 33457889999876655443210
Q ss_pred ----------------------------C------CEEEEcCCCCcchHHHHHhcCce---EEEeecCCCCCCCCCHHHH
Q 022213 131 ----------------------------G------ANVLLPRPGWPYYEGIAQRKQVE---VRHFDLLPERNWEVDLDAV 173 (301)
Q Consensus 131 ----------------------------g------d~Vl~~~p~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~l 173 (301)
| -+|+++.-.|.++...+..+|+. ++.+|++ .++.+|++.|
T Consensus 188 n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD--~~~rmd~~~L 265 (608)
T TIGR03811 188 NMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVD--SNYRMDINEL 265 (608)
T ss_pred ccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecC--CCCcCCHHHH
Confidence 0 05788888899999999999984 7788875 3567999999
Q ss_pred Hhhccc----C-c-cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC--eEEEccCCcccc
Q 022213 174 EALADK----N-T-AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV--MVVADEVYGHLT 226 (301)
Q Consensus 174 ~~~~~~----~-~-~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~--~ii~D~~y~~~~ 226 (301)
++.+.+ + + -+|+.+..+..+|.+=+.+++.+|++.++++|+ ++.+|.+|+.+.
T Consensus 266 ~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~ 326 (608)
T TIGR03811 266 EKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYG 326 (608)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchh
Confidence 987753 2 2 235556668889999885555555555578897 699999999853
No 374
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=98.57 E-value=2.6e-06 Score=76.11 Aligned_cols=174 Identities=21% Similarity=0.241 Sum_probs=121.5
Q ss_pred CCCCCC---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC--CHH---HHHHHHHHHhc-CCC----CEEEEcCCCCcc
Q 022213 77 FNCYAT---NSGIPPARRAIADYLSRDLPYKLSADDVYVTL--GCK---QAVEVILSVLA-RPG----ANVLLPRPGWPY 143 (301)
Q Consensus 77 ~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~--g~~---~al~~~~~~l~-~~g----d~Vl~~~p~~~~ 143 (301)
++-|.| .+|..++...+.+||.+- ..-|.|.+.+ |++ .++ ++++..- ..| +.|++|+..|..
T Consensus 95 iHP~~pe~~vqG~l~li~~Lq~~L~~I----TG~DavsLQP~AGAqGE~aGl-l~Ir~YHe~rG~~~R~~~LIP~SAHGT 169 (496)
T COG1003 95 IHPFQPEEQVQGYLELIYELQEWLKEI----TGMDAVSLQPNAGAQGEYAGL-LAIRAYHESRGEGHRNICLIPDSAHGT 169 (496)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHh----cCCceeeccCCCCcchhhHHH-HHHHHHHHHcCCCcCcEEEeeccccCC
Confidence 334554 457888889999999773 2345565533 332 222 2333332 233 689999999998
Q ss_pred hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc
Q 022213 144 YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG 223 (301)
Q Consensus 144 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~ 223 (301)
....+...|.+++.|+.+.+.. +|+++|+..+.+++.++.+++||. .|.. .+.+++|+++.+++|..+..|.+..
T Consensus 170 NPASAam~G~~VV~V~~~~~G~--VDlddLk~k~~~~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~DGANl 244 (496)
T COG1003 170 NPASAAMAGFKVVVVKCDENGN--VDLDDLRAKAEDNLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYYDGANL 244 (496)
T ss_pred ChhhHhhcCceEEEEecCCCCC--ccHHHHHHHhccceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEecCcch
Confidence 8888899999999999866544 999999999998899999999874 2333 4679999999999999999999988
Q ss_pred ccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEEEe
Q 022213 224 HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWLVT 266 (301)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~~~ 266 (301)
.-..+-.++-.+.. + |+=-.++|+|..| |-..|=|.+
T Consensus 245 NA~vG~~rPGd~G~-----D-V~HlNLHKTF~iPHGGGGPG~GPvgV 285 (496)
T COG1003 245 NAIVGLARPGDMGF-----D-VVHLNLHKTFCIPHGGGGPGAGPVGV 285 (496)
T ss_pred hhhhcccccccccc-----c-eEEeecccccccCCCCCCCCCCceeh
Confidence 76665444433321 1 3333667776554 555666654
No 375
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=98.50 E-value=1.2e-05 Score=69.52 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=110.1
Q ss_pred HHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcc-----hHHHHHhcCceEEEeecC
Q 022213 89 ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPY-----YEGIAQRKQVEVRHFDLL 161 (301)
Q Consensus 89 lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~-----~~~~~~~~g~~~~~~~~~ 161 (301)
+-..+|.++ +..+.+++++.+.+--++.++.+.++ +|++|++++-.-++ ...++..++.. .++
T Consensus 81 lgdklApLi------GA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~~- 150 (407)
T COG3844 81 LGDKLAPLI------GARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YDL- 150 (407)
T ss_pred HHHHhhhhh------cCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---ccc-
Confidence 334455555 45788999999999999988888864 58888877543332 12344444433 111
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
.....++++++++++.+.++++++.+.-||..++ +.+|-.++++++++++.|-+++. +.-+..+...+-+
T Consensus 151 ---~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsa----Gavp~~Lh~~gaD 220 (407)
T COG3844 151 ---EGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSA----GAVPVDLHAAGAD 220 (407)
T ss_pred ---eeeeChHHHHHhhccceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhccc----CCcceeecccCCC
Confidence 1225677899999988999999999999999999 88899999999999999999987 3333334333333
Q ss_pred CCEEEEecCcccCCC-CcceeEEEEe
Q 022213 242 VPVITLGSISKRWLV-PGWRFGWLVT 266 (301)
Q Consensus 242 ~~vi~~~s~SK~~~~-~G~rvG~~~~ 266 (301)
+-|++..|.+.. ||---|.-+.
T Consensus 221 ---faigcsyKYLNgGPGapa~l~v~ 243 (407)
T COG3844 221 ---FAIGCSYKYLNGGPGAPAGLFVA 243 (407)
T ss_pred ---eeeeeeceeccCCCCCceeEEec
Confidence 889999998766 6655444444
No 376
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=98.49 E-value=1.7e-07 Score=82.83 Aligned_cols=206 Identities=20% Similarity=0.195 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHH-HHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcC
Q 022213 60 TAVEAEDAIVDAVRSGKFNCYATNSGIPPAR-RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPR 138 (301)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr-~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~ 138 (301)
.++.+.+++.+...+-...+|.-..|-..-| ..+.+++.. =...+..+++++...|+.+++.+++ +|.+|++..
T Consensus 18 l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~----ltgAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsR 92 (367)
T PF03841_consen 18 LSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCE----LTGAEAALVVNNNAAAVLLALNTLA-KGKEVIVSR 92 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccc-ccccccccc
Confidence 4466777776665532222443222222111 222333322 1356788899999999999999887 455666542
Q ss_pred CCC------cchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc--ccCCCHHHHHHHHHHHH
Q 022213 139 PGW------PYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC--GNVFTYHHLQEIAEMAR 210 (301)
Q Consensus 139 p~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt--G~~~~~~~l~~i~~~~~ 210 (301)
-.- +....+.+..|.+++++...+ ...++++++++++++.+++..+++|-. |..-. -.+++++++++
T Consensus 93 GelVeiGgsFRip~vm~~sGa~lvEVGttN----~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~-~~~~el~~la~ 167 (367)
T PF03841_consen 93 GELVEIGGSFRIPDVMRQSGARLVEVGTTN----RTHLSDYEKAITENTAALLKVHTSNFRIQGFTGE-VSLEELAELAK 167 (367)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred cccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccc-ccHHHHHHHHh
Confidence 211 224567778899988887532 256788999999999999889987753 32211 24889999999
Q ss_pred hCCCeEEEccCCcccc----cCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213 211 KLRVMVVADEVYGHLT----FGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 211 ~~~~~ii~D~~y~~~~----~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
+|++++|+|-.-+.+. |+-+..+.+..+-..+--++++|--|.+|.|- .|.+++. .++++++++.
T Consensus 168 ~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ--aGiI~Gk--------k~lI~~lk~~ 236 (367)
T PF03841_consen 168 EHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ--AGIIVGK--------KELIEKLKKH 236 (367)
T ss_dssp HHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S---EEEEEE--------HHHHHHHHHH
T ss_pred hcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC--eEEEEeC--------HHHHHHHhhC
Confidence 9999999999885443 22122333444433333388889999876554 7999984 4699988875
No 377
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=98.19 E-value=1.4e-05 Score=71.95 Aligned_cols=178 Identities=18% Similarity=0.207 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC-----CC---CEEEEcCCCCcchHHHHHhcCceEE
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-----PG---ANVLLPRPGWPYYEGIAQRKQVEVR 156 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-----~g---d~Vl~~~p~~~~~~~~~~~~g~~~~ 156 (301)
+..++..++-+++.+-++-+ +..-=..|.|+|+++..+-..-.. .| -.++.+...+..+....+..+++..
T Consensus 117 ~~~~~e~~~Vnm~~~L~~~~-~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~ 195 (491)
T KOG1383|consen 117 VVRKLEAECVNMIANLFNAP-SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELR 195 (491)
T ss_pred hhHHHHHHHHHHHHHHhcCC-ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEE
Confidence 45677777777776655433 222336788999996555544421 22 3477777777788888888999999
Q ss_pred EeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh-CCCeEEEccCCcccccCCCCCCCc
Q 022213 157 HFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK-LRVMVVADEVYGHLTFGSIPYTPM 235 (301)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~-~~~~ii~D~~y~~~~~~~~~~~~~ 235 (301)
.+++++ +.+.+|+.++.+.+++++..++..-|+.|+|..=+ +++|.++..+ +++.+.+|.+-+.|.-. ......
T Consensus 196 ~V~~~~-~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~---ve~l~~l~~e~w~ipiHvDa~~GgFi~p-~~~~~~ 270 (491)
T KOG1383|consen 196 EVPLDE-GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIED---VEKLADLLLEIWDIPIHVDACLGGFINP-AGYLNE 270 (491)
T ss_pred eeeccc-cceEecHHHHHHHhccceEEEEEEcCCCCccchhh---HHHHHHHHHHHhCCceeecccCcccccc-ccccCc
Confidence 999876 67889999999999999999999999999999866 8888888778 99999999999988752 011111
Q ss_pred cccCCCCC-EEEE-ecCcccCCCCcceeEEEEeeCC
Q 022213 236 GLFGSIVP-VITL-GSISKRWLVPGWRFGWLVTNDP 269 (301)
Q Consensus 236 ~~~~~~~~-vi~~-~s~SK~~~~~G~rvG~~~~~~~ 269 (301)
..++-..+ |-.+ .+-+|. |+.--..||++=.+.
T Consensus 271 ~~fdFr~p~V~Sisa~~HKY-Gl~~~G~~~vl~r~k 305 (491)
T KOG1383|consen 271 EEFDFRVPGVTSISADGHKY-GLAPAGSSWVLYRNK 305 (491)
T ss_pred cccccCCCCceeEeecccee-eeeecCcEEEEEccc
Confidence 12221111 2111 134454 665556888876554
No 378
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=98.16 E-value=0.00015 Score=66.28 Aligned_cols=154 Identities=21% Similarity=0.353 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCCcchHHHHH----hcCceEEEee
Q 022213 87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA---RPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFD 159 (301)
Q Consensus 87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~---~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~ 159 (301)
-++...++++. +++.-|.-+-.|++.+-+.++.+.. +.+++|+++...|+.+..+++ ..|++++.++
T Consensus 113 fe~Qs~i~eLT------GmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~ 186 (429)
T PF02347_consen 113 FEYQSMICELT------GMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVP 186 (429)
T ss_dssp HHHHHHHHHHH------TSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-
T ss_pred HHHHHHHHHhh------CCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEec
Confidence 34555566665 3455566777788777776666553 334699999999998876544 4688888888
Q ss_pred cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213 160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239 (301)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 239 (301)
...... .| ++++.++++.+||. .|.+-+ +++|+++++++|.++++ .+.- +.... ..+-..++
T Consensus 187 ~~~~~~--~d--------~~~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~-~ad~-~aL~~--l~~Pge~G 248 (429)
T PF02347_consen 187 LDEDGT--TD--------DDDTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV-GADP-NALGG--LKSPGEYG 248 (429)
T ss_dssp BBTTCS--B---------STTEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE-CGGC-CGCCT--C--GGGGT
T ss_pred ccccCC--cc--------ccCeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE-ecCH-HHHhC--cCChhhcC
Confidence 754322 23 56788899999985 788877 99999999999998886 3322 22221 11222333
Q ss_pred CCCCEEEEecCcccCCCC----cceeEEEEeeC
Q 022213 240 SIVPVITLGSISKRWLVP----GWRFGWLVTND 268 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~----G~rvG~~~~~~ 268 (301)
-+ |++++ +|.||.| |-..|++.+.+
T Consensus 249 AD---I~vg~-~Q~fg~p~~~GGP~~G~~a~~~ 277 (429)
T PF02347_consen 249 AD---IVVGE-HQTFGIPMGFGGPGAGFFAVRE 277 (429)
T ss_dssp -S---EEEEC-CTTTT---CCC-S--EEEEE-G
T ss_pred cc---EEeeC-CCCCcccCCCCCCCeeeEEEhh
Confidence 33 55665 8887775 66788988754
No 379
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.08 E-value=0.00022 Score=71.15 Aligned_cols=177 Identities=16% Similarity=0.268 Sum_probs=111.6
Q ss_pred CChHHHHHHHHHHHhcCC-CCCCCCCC-----C----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc
Q 022213 59 RTAVEAEDAIVDAVRSGK-FNCYATNS-----G----IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA 128 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~-~~~Y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~ 128 (301)
..|+.+.+.+. .++. +..|.|-+ | +-++.+.++++. +++..|.-+..++|.+.++++.+..
T Consensus 77 ~~p~~i~r~v~---~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLt------Gm~~aNaSl~d~atA~aEa~~~a~~ 147 (939)
T TIGR00461 77 ILPPVIQRNLL---ENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLT------GLPVANASLLDEGTAAAEAMALSFN 147 (939)
T ss_pred cCChHHHHHHH---hCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHH------CCChhhhhccchhhHHHHHHHHHHH
Confidence 34555554433 3332 55666633 3 334556666666 4677788899999998887777753
Q ss_pred ---CCCCEEEEcCCCCcchHHHHH----hcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213 129 ---RPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH 201 (301)
Q Consensus 129 ---~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~ 201 (301)
+++++|++++-.|+.+..+++ ..|++++.++ .++|+..+ ++.++++.+|+. .|.+.+
T Consensus 148 ~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~----------~~~l~~~~--~~~~v~~q~Pn~-~G~ied--- 211 (939)
T TIGR00461 148 VSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD----------CSDIKKAV--DVFGCLLQYPAT-DGSILD--- 211 (939)
T ss_pred hhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc----------HHHHhhcC--CEEEEEEECCCC-CeEEec---
Confidence 234899999999998765554 6788877653 34566554 356677778764 788876
Q ss_pred HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEEEeeC
Q 022213 202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWLVTND 268 (301)
Q Consensus 202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~~~~~ 268 (301)
+++|+++++++|.+++++.--..+.. ..+-..++-+ |+++ .+|.||.| |-..|++.+++
T Consensus 212 ~~~i~~~~h~~gal~~~~ad~~al~l----l~~Pge~GaD---i~vg-~~q~fg~p~g~GGP~aG~~a~~~ 274 (939)
T TIGR00461 212 YKQLIDALHSHKSLVSVAADLMALTL----LTPPGHYGAD---IVLG-SSQRFGVPMGYGGPHAAFFAVKD 274 (939)
T ss_pred HHHHHHHHHHcCCEEEEEechHHhCC----cCCHHHcCCc---EEee-CCCccCCCCCCCCCceeeeeecH
Confidence 89999999999999998544333221 1122233322 5444 34444542 44478887643
No 380
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=98.05 E-value=5.8e-05 Score=65.32 Aligned_cols=211 Identities=14% Similarity=0.090 Sum_probs=121.6
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC---CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN---CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~---~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~ 117 (301)
++.+++|-.+--.. .+-.+.+.+.++++++.+.-.+. -|.+. ..++.+-+++++ .-+.++-++.+-
T Consensus 58 Gk~ylDflsaysaV-nqGhchpki~~aLqeq~~kLtlssrafYnd~--~~~f~~~vt~lf--------~~~kvlpmnTGa 126 (427)
T KOG1402|consen 58 GKEYLDFLSAYSAV-NQGHCHPKIIKALQEQADKLTLSSRAFYNDV--LGEFAEYVTKLF--------GYDKVLPMNTGA 126 (427)
T ss_pred ccchhhhhhhhhhc-ccCCCCHHHHHHHHHHHhHhhhhhHHHhhhh--HHHHHHHHHHhc--------Ccceeeecccch
Confidence 45555554442111 13456788889998887632111 12221 234445555544 356778788889
Q ss_pred HHHHHHHHHhcC--------CCC--EEEEcCCCCcchHHHHHhcCceE----EEeecCCCCC---CCCCHHHHHhhcccC
Q 022213 118 QAVEVILSVLAR--------PGA--NVLLPRPGWPYYEGIAQRKQVEV----RHFDLLPERN---WEVDLDAVEALADKN 180 (301)
Q Consensus 118 ~al~~~~~~l~~--------~gd--~Vl~~~p~~~~~~~~~~~~g~~~----~~~~~~~~~~---~~~~~~~l~~~~~~~ 180 (301)
||.+.++....+ |.| +|+...-.|.+-.-.+-.++.+. .+=|..+... ---|.+.|+.++++.
T Consensus 127 Ea~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~~ 206 (427)
T KOG1402|consen 127 EAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKSP 206 (427)
T ss_pred hHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcCC
Confidence 999999877652 323 34444444443111110111110 0000000000 013789999999887
Q ss_pred ccEEEEcCC-CCCcccCCCH-HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213 181 TAAMVIINP-GNPCGNVFTY-HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG 258 (301)
Q Consensus 181 ~~~v~l~~p-~nptG~~~~~-~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G 258 (301)
..+.|+.-| +-..|++.+. ..++++.++|.+||+++|.||++..+...++ +.....-.-..+++. +.|.++..=
T Consensus 207 ~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk-~la~d~env~PDivi---lgKalSGG~ 282 (427)
T KOG1402|consen 207 NVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK-LLACDYENVRPDIVI---LGKALSGGV 282 (427)
T ss_pred CeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc-EEEeehhhcCCCeEE---EeccccCCe
Confidence 777778877 6677876655 6899999999999999999999999887664 222221111233443 468766655
Q ss_pred ceeEEEEe
Q 022213 259 WRFGWLVT 266 (301)
Q Consensus 259 ~rvG~~~~ 266 (301)
+.+..+++
T Consensus 283 ~Pvsavl~ 290 (427)
T KOG1402|consen 283 YPVSAVLA 290 (427)
T ss_pred eeeEEEEe
Confidence 66777776
No 381
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=97.69 E-value=0.0015 Score=59.22 Aligned_cols=195 Identities=12% Similarity=0.124 Sum_probs=115.8
Q ss_pred ccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC---CCCCCCCCCCCHHHHHHHHHHHhh
Q 022213 23 VTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG---KFNCYATNSGIPPARRAIADYLSR 99 (301)
Q Consensus 23 ~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~ 99 (301)
.+..+++.++.+-+ -+++....+. .+.-+||....+...+.+.+..+ -........-.++|..-+.+|+.+
T Consensus 51 E~~~~Il~D~ekiI----~PGitHw~hP--~fhAyfpa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~k 124 (511)
T KOG0628|consen 51 ESWEDILGDLEKII----MPGITHWQHP--HFHAYFPAGNSYPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGK 124 (511)
T ss_pred hhHHHHHHHHHHHc----cCCCcccCCC--ceeeEccCccchHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHH
Confidence 34444555544332 2444444443 33233555333333344444322 122334445689999999999887
Q ss_pred hCCC-------CCCCCCEEEcCCHHHHHHHHHHHhc-------CCC-----------CE-EEEcCCCCcchHHHHHhcCc
Q 022213 100 DLPY-------KLSADDVYVTLGCKQAVEVILSVLA-------RPG-----------AN-VLLPRPGWPYYEGIAQRKQV 153 (301)
Q Consensus 100 ~~~~-------~~~~~~i~~t~g~~~al~~~~~~l~-------~~g-----------d~-Vl~~~p~~~~~~~~~~~~g~ 153 (301)
-.+. .....-=++-.+++++...++.+-. +.+ +- +...+-++.+....+...++
T Consensus 125 ml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~V 204 (511)
T KOG0628|consen 125 MLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGV 204 (511)
T ss_pred HhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcce
Confidence 4432 1112222444455666655554431 112 22 33567788888888888899
Q ss_pred eEEEeecCCCCCCCCCHHHHHhhcccCc-----cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213 154 EVRHFDLLPERNWEVDLDAVEALADKNT-----AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF 227 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~ 227 (301)
+...++.+. ++.+..+.|.+++.+.. ..+++.+. -|..+-.-+++.+|..+|+++++|+.+|.+|+...+
T Consensus 205 klR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~at~--GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~ 279 (511)
T KOG0628|consen 205 KLRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVCATL--GTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAF 279 (511)
T ss_pred eEEEeeccc--CcCCCHHHHHHHHHHHHhCCCccEEEEEee--cCccccccccHHHhcchhhhcCEEEEeehhhccccc
Confidence 988887654 78899999999986522 22222333 233344557899999999999999999999997655
No 382
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00087 Score=58.93 Aligned_cols=136 Identities=19% Similarity=0.241 Sum_probs=98.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC-----CCCEEEEcCCCCc-chHHHHHhcC
Q 022213 79 CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-----PGANVLLPRPGWP-YYEGIAQRKQ 152 (301)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-----~gd~Vl~~~p~~~-~~~~~~~~~g 152 (301)
.|.-+.+...|++++.+.+. -+.++-|.-+..|=+.++..+++ ||.+.++++..|. ......+..|
T Consensus 74 AYagsrs~~~L~~avkdifG--------fq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng 145 (471)
T COG3033 74 AYAGSRSYYALADAVKDIFG--------FQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQING 145 (471)
T ss_pred hhcccccHHHHHHHHHHhcC--------ceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHhcC
Confidence 58888889999999999872 35677788777777777777765 4555556655555 4455556677
Q ss_pred ceEEEeecCCCC--------CCCCCHHHHHhhccc----CccEEEEc-CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEc
Q 022213 153 VEVRHFDLLPER--------NWEVDLDAVEALADK----NTAAMVII-NPGNPCGNVFTYHHLQEIAEMARKLRVMVVAD 219 (301)
Q Consensus 153 ~~~~~~~~~~~~--------~~~~~~~~l~~~~~~----~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D 219 (301)
..+.-++.+... ...+|++.|++.+++ +..-|+++ +.|.-.|...|.+.++++.++|++|++.++.|
T Consensus 146 ~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~D 225 (471)
T COG3033 146 ATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMD 225 (471)
T ss_pred CccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEee
Confidence 766666543321 134899999999875 33334444 34557789999999999999999999999999
Q ss_pred cCC
Q 022213 220 EVY 222 (301)
Q Consensus 220 ~~y 222 (301)
.+-
T Consensus 226 a~R 228 (471)
T COG3033 226 AAR 228 (471)
T ss_pred hhh
Confidence 874
No 383
>PLN02672 methionine S-methyltransferase
Probab=97.49 E-value=0.0036 Score=63.67 Aligned_cols=215 Identities=11% Similarity=0.059 Sum_probs=133.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc------CCCCEEEEc
Q 022213 64 AEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA------RPGANVLLP 137 (301)
Q Consensus 64 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~------~~gd~Vl~~ 137 (301)
....++..+.+..+.-|.++.|...+|..||.|++..+++.+.+++|++.++-..|++.+++.+. +.+.+-.++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1082)
T PLN02672 406 FLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLP 485 (1082)
T ss_pred HHHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCC
Confidence 34566777877788889999999999999999999999999999999999999999988887663 333222222
Q ss_pred CCCCcchHHHHHhcC--------ceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHH
Q 022213 138 RPGWPYYEGIAQRKQ--------VEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEM 208 (301)
Q Consensus 138 ~p~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~ 208 (301)
..|...+...| ..+..+.... ..+.+.+++++ ++++|+..... +-..+....+.|++.
T Consensus 486 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 552 (1082)
T PLN02672 486 ----KKWLTSLAIENATSDSKSDDVITVIEAPR------QSDLVIELIKKLKPQVVVTGMAD---FEMRTSTAFEHLLNV 552 (1082)
T ss_pred ----HHHHhHhhhhcccccCccCCeEEEEeCCC------cchHHHHHHHhCCCeEEEEeccc---hhhhhHHHHHHHHHH
Confidence 12222222222 2233222111 11244455544 55655544333 223444568999999
Q ss_pred HHhCCCeEEEccCCcccccCCCCCCCcccc----CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLF----GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 209 ~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~----~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
+++.|..++.|..-..-.-..+....+..+ ....+..++.++-|+--.+.+-+.+++.-+ +.+.+.+.+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 625 (1082)
T PLN02672 553 TAEIGARLFLDISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISEN-------EAVLKALSK 625 (1082)
T ss_pred HHhhCcEEEEehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecCc-------HHHHHHHHH
Confidence 999999999998754321111111111111 111245667789999777999999998533 235666655
Q ss_pred hhcc-cCCCcccccc
Q 022213 285 CLSI-YSDIPTFIQV 298 (301)
Q Consensus 285 ~~~~-~~~~~~~~q~ 298 (301)
...+ .+.++..+|.
T Consensus 626 ~~~~~~~~~~~~~~~ 640 (1082)
T PLN02672 626 TGEVLEGRTAIISQF 640 (1082)
T ss_pred HHHhhccchHHHHHH
Confidence 5442 3445555553
No 384
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=97.42 E-value=0.0045 Score=55.68 Aligned_cols=193 Identities=10% Similarity=0.077 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC--C-----C-----C
Q 022213 65 EDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR--P-----G-----A 132 (301)
Q Consensus 65 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--~-----g-----d 132 (301)
.+.+.+.++- ....|.-.....-..+.+-....+-.|.....|.|+.-.|+...++...-+--+ | | +
T Consensus 119 g~wlT~t~Nt-n~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~ 197 (510)
T KOG0629|consen 119 GEWLTSTANT-NMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPP 197 (510)
T ss_pred HHHHHhccCC-CCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCc
Confidence 3444444332 233465444444444444444444455555556666555555555444433211 2 2 3
Q ss_pred EEE-EcCCCCcchHHHHHhcCc---eEEEeecCCCCCCCCCHHHHHhhccc-Ccc-EE-EEcCC---CCCcccCCCHHHH
Q 022213 133 NVL-LPRPGWPYYEGIAQRKQV---EVRHFDLLPERNWEVDLDAVEALADK-NTA-AM-VIINP---GNPCGNVFTYHHL 202 (301)
Q Consensus 133 ~Vl-~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~v-~l~~p---~nptG~~~~~~~l 202 (301)
-|+ ..+-+|.+....++.+|+ .++.|+.+. ...+++++||+.+.+ +.+ .+ ++.+. +..-|..=+ +
T Consensus 198 lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e--~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd---L 272 (510)
T KOG0629|consen 198 LILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDE--RGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD---L 272 (510)
T ss_pred EEEEecccchhhHHHHHHHhccCCceeEEecccc--cCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc---H
Confidence 455 445677788888888884 455555433 345999999987643 112 11 23333 445566555 9
Q ss_pred HHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213 203 QEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT 266 (301)
Q Consensus 203 ~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~ 266 (301)
..|+++|++|++|+.+|.+|+. +-.....-.-+.-... .+ =+-++.+|..| ..+.++..+.
T Consensus 273 ~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Gier-a~-SvtwnpHK~~g-aplqCsa~l~ 334 (510)
T KOG0629|consen 273 NGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIER-AN-SVTWNPHKLMG-APLQCSAFLT 334 (510)
T ss_pred HHHHHHHHhcCEEEEeecccccccccChhhHhhccCccc-cC-ceeecHHHhhc-CcchhhHHHH
Confidence 9999999999999999999987 2222111111111111 11 34457888844 4566666554
No 385
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=97.31 E-value=0.017 Score=52.25 Aligned_cols=168 Identities=22% Similarity=0.309 Sum_probs=105.6
Q ss_pred CCCCCCCCC-----C----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCCcc
Q 022213 76 KFNCYATNS-----G----IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA---RPGANVLLPRPGWPY 143 (301)
Q Consensus 76 ~~~~Y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~---~~gd~Vl~~~p~~~~ 143 (301)
.+..|.|-+ | +.++..-++++. +++-.|--+--++|.+-++++.+.. ++.++|+++.-.|+.
T Consensus 103 wyTaYTPYQpEISQGrLqaLfefQtlv~dLT------Gm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpq 176 (450)
T COG0403 103 WYTAYTPYQPEISQGRLEALFEFQTLVADLT------GLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQ 176 (450)
T ss_pred ccccCCCCchhhhhHHHHHHHHHHHHHHHHh------CCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHH
Confidence 356676633 3 233445555555 4566677777788888777777664 246899999999998
Q ss_pred hHHHHHh----cCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEc
Q 022213 144 YEGIAQR----KQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVAD 219 (301)
Q Consensus 144 ~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D 219 (301)
+..+++- .|.+++.++. -|.+.+++..+..+.++++.+|+. .|.. .+++++|.+.+++++.++++=
T Consensus 177 t~~Vl~Tra~~~g~~i~~~~~-------~d~~~l~~~~~~~~~gv~vQyP~~-~G~~--~~d~~~l~~~~h~~~al~~v~ 246 (450)
T COG0403 177 TLDVLRTRAEGLGIEIEVVDA-------DDLDDLESADDGDVFGVLVQYPNT-FGIV--EEDLRALIEAAHSAGALVIVA 246 (450)
T ss_pred HHHHHHhhcccCceEEEEecc-------chhhhhhhccccCeEEEEEecCCC-CCcc--chhHHHHHHHHhhcCCEEEEE
Confidence 8777652 4566665544 267778877223677888888883 5622 235999999999999876642
Q ss_pred cCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEEEee
Q 022213 220 EVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWLVTN 267 (301)
Q Consensus 220 ~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~~~~ 267 (301)
.---.+. ...+-.+++.+ |++++..-. |.| |-.+||.++.
T Consensus 247 aDplaL~----LL~pPGe~GAD---IvvG~~Qrf-GvPmgfGGPhag~fA~~ 290 (450)
T COG0403 247 ADPLALG----LLKPPGEFGAD---IVVGSAQRF-GVPMGFGGPHAGYFAVK 290 (450)
T ss_pred echhHhh----ccCCccccCCc---eEEecCccc-CCCcCCCCcceeeeeEh
Confidence 1111111 11222233333 778776664 554 6778888874
No 386
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=97.24 E-value=0.00094 Score=59.91 Aligned_cols=167 Identities=16% Similarity=0.154 Sum_probs=96.7
Q ss_pred CCCEEEcCCHHHH-HHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC-CCCCCCHHHHHhhccc---
Q 022213 107 ADDVYVTLGCKQA-VEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWEVDLDAVEALADK--- 179 (301)
Q Consensus 107 ~~~i~~t~g~~~a-l~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~--- 179 (301)
....++.+-+|.. +.+++.++. ..++.|+.+.-.+......+..+|++++.++...+ +....|.+.+++.+++
T Consensus 74 ~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~ 153 (389)
T PF05889_consen 74 VKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELGA 153 (389)
T ss_dssp HCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCG
T ss_pred ccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhCC
Confidence 3457777666554 444555553 35789999888888878888999999999986432 3344577788877754
Q ss_pred CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCE-EEEecCcccCCCCc
Q 022213 180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV-ITLGSISKRWLVPG 258 (301)
Q Consensus 180 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~v-i~~~s~SK~~~~~G 258 (301)
.+..+++++++.-.|... +++++|+++|++||+..|+..+|+-=.. .--..+..-...+++ +++.|+-|.|..|
T Consensus 154 ~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgvQ~~--~~~~~i~~a~~~GRvda~vqS~dkNF~VP- 228 (389)
T PF05889_consen 154 DNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGVQSS--KCMHLIQQAWRVGRVDAFVQSTDKNFMVP- 228 (389)
T ss_dssp GGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTTT-H--HHHHHHHHHHHHSTCSEEEEEHHHHHCEE-
T ss_pred CCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhhhHH--HHHHHHHHHHhcCCcceeeeecCCCEEec-
Confidence 345566666544344433 3699999999999999999999985100 000000000001222 7888999998765
Q ss_pred ceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213 259 WRFGWLVTNDPNGIFQKSGIIDSIKDC 285 (301)
Q Consensus 259 ~rvG~~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
..-+.+++++ +..+..+...
T Consensus 229 vGgai~As~~-------~~~i~~vs~~ 248 (389)
T PF05889_consen 229 VGGAIMASFD-------PSGILAVSKE 248 (389)
T ss_dssp SSHEEEEESS-------HHHHHHHHHT
T ss_pred CCCcEEEecC-------HHHHHHHHHH
Confidence 2234444433 3466666553
No 387
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.021 Score=50.57 Aligned_cols=219 Identities=15% Similarity=0.142 Sum_probs=121.5
Q ss_pred cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHHHHHhh
Q 022213 22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT--NSGIPPARRAIADYLSR 99 (301)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~ 99 (301)
..++.++++..-+. ...-|.|=..+ -.+...+.+++...+.+.=--.|+- -.|-.++..++..+..+
T Consensus 25 DPev~~ii~~Ek~R-----Q~~gieLIaSE------NFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~ 93 (477)
T KOG2467|consen 25 DPEVHDIIEKEKER-----QKRGIELIASE------NFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQK 93 (477)
T ss_pred ChHHHHHHHHHHHh-----hhcceeEeecc------cchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHH
Confidence 44566666543221 34456663333 2345778888887776421111221 11224455544444433
Q ss_pred ----hCCCCCCCC----CEEEcCCHHHHHHHHHHHhcCCCCEEE---EcCCCCcchHHHH--HhcCceEEE-----eecC
Q 022213 100 ----DLPYKLSAD----DVYVTLGCKQAVEVILSVLARPGANVL---LPRPGWPYYEGIA--QRKQVEVRH-----FDLL 161 (301)
Q Consensus 100 ----~~~~~~~~~----~i~~t~g~~~al~~~~~~l~~~gd~Vl---~~~p~~~~~~~~~--~~~g~~~~~-----~~~~ 161 (301)
.++ ++++ ||-. -+++.|.+.+..++++|+|+|. +|+-+|..+.... +.-...-++ +.++
T Consensus 94 RALeaF~--ldp~kWGVNVQp-~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~ 170 (477)
T KOG2467|consen 94 RALEAFG--LDPEKWGVNVQP-YSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVD 170 (477)
T ss_pred HHHHHhC--CCHHHCceeecc-CCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeC
Confidence 122 4443 3333 3456888899999999999988 4444554321111 111111222 2233
Q ss_pred CCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccC
Q 022213 162 PERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFG 239 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~ 239 (301)
+.. .-+|.|.|++.... ++++++.-... -...++-.++++|++ +.|.+++.|-++.. ++-.+.-+.|+...+
T Consensus 171 ~~T-G~IDYD~Le~~A~~frPk~iiaG~Sa--Y~R~~DYaR~R~Iad---~~gA~Lm~DMAHISgLVAA~vipsPFey~D 244 (477)
T KOG2467|consen 171 PST-GYIDYDKLEKTATLFRPKLIIAGTSA--YSRLIDYARFRKIAD---KVGAYLMADMAHISGLVAAGVIPSPFEYCD 244 (477)
T ss_pred CCC-CceehHHHHHHHHhcCCcEEEecccc--chhhccHHHHHHHHH---hcCceeehhhhhHHHHHhcccCCCcccccc
Confidence 433 35899999986544 66765532222 223455455666555 77999999999874 333344444444332
Q ss_pred CCCCEEEEecCcccCCCCcceeEEEEee
Q 022213 240 SIVPVITLGSISKRWLVPGWRFGWLVTN 267 (301)
Q Consensus 240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~ 267 (301)
|+..+.+|+ +.|-|-|.+.-.
T Consensus 245 -----iVTTTTHKs--LRGPRg~mIFyR 265 (477)
T KOG2467|consen 245 -----IVTTTTHKS--LRGPRGAMIFYR 265 (477)
T ss_pred -----eeecccccc--ccCCcceeEEEe
Confidence 888999998 678888887653
No 388
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=97.12 E-value=0.00064 Score=58.32 Aligned_cols=205 Identities=14% Similarity=0.121 Sum_probs=116.6
Q ss_pred CChHHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC---CCCEE
Q 022213 59 RTAVEAEDAIVDAVRSGKF-NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR---PGANV 134 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~---~gd~V 134 (301)
.+.+++.++..+++.-... .++- ..+|.+....+. .... .-+-++++++++||.+++++...+ -.|.|
T Consensus 61 hchp~VV~A~~kQmat~~tN~RFl----hd~lv~cA~~l~-stlP---eLsvc~F~NSGSEANDLALRLAR~ftkhqDvI 132 (452)
T KOG1403|consen 61 HCHPEVVRAGAKQMATISTNNRFL----HDELVQCARTLT-STLP---ELSVCFFVNSGSEANDLALRLARNFTKHQDVI 132 (452)
T ss_pred cCCHHHHHHHHHHHhHhcccchhh----HHHHHHHHHHHh-hcCC---CceEEEEecCCchhhHHHHHHHHhhcccCceE
Confidence 3567788888877763211 1111 123333222222 1111 234678999999999999987753 34555
Q ss_pred EEcCCCCcchHHHHHh-------cC---ceEEEeecCCCC-----CCC-----------CCHHHHHhhcc----cC-ccE
Q 022213 135 LLPRPGWPYYEGIAQR-------KQ---VEVRHFDLLPER-----NWE-----------VDLDAVEALAD----KN-TAA 183 (301)
Q Consensus 135 l~~~p~~~~~~~~~~~-------~g---~~~~~~~~~~~~-----~~~-----------~~~~~l~~~~~----~~-~~~ 183 (301)
.+. ..|++....... .| .++.++.+-+-. .+. .-.+.+++.+. +. ..+
T Consensus 133 tld-HAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvA 211 (452)
T KOG1403|consen 133 TLD-HAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVA 211 (452)
T ss_pred EEe-chhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHH
Confidence 554 455543221110 11 122223221110 000 11233333332 11 222
Q ss_pred EEEc-CCCCCcccCCCH-HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213 184 MVII-NPGNPCGNVFTY-HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF 261 (301)
Q Consensus 184 v~l~-~p~nptG~~~~~-~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv 261 (301)
.++. .-+.-.|.++++ ...+++++..+.+|-+.|.||+.-.|..-+..++.+..++--.+++ ++.|. ...|..+
T Consensus 212 AfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIV---tmgKp-mGNGhPV 287 (452)
T KOG1403|consen 212 AFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIV---TMGKP-MGNGHPV 287 (452)
T ss_pred HHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchh---eeccc-CCCCCee
Confidence 3333 345566776665 5789999999999999999999999877778888887776444445 66888 5689999
Q ss_pred EEEEeeCCCCcccchhHHHHHHh
Q 022213 262 GWLVTNDPNGIFQKSGIIDSIKD 284 (301)
Q Consensus 262 G~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
+.++... ++.+.+..
T Consensus 288 a~Vattk--------eIA~Af~a 302 (452)
T KOG1403|consen 288 AAVATTK--------EIAQAFHA 302 (452)
T ss_pred eEEeccH--------HHHHHhcc
Confidence 9998733 46666644
No 389
>PRK12566 glycine dehydrogenase; Provisional
Probab=96.51 E-value=0.19 Score=50.61 Aligned_cols=118 Identities=14% Similarity=0.187 Sum_probs=75.3
Q ss_pred CCCCCCCC-----C----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCCcch
Q 022213 77 FNCYATNS-----G----IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA---RPGANVLLPRPGWPYY 144 (301)
Q Consensus 77 ~~~Y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~---~~gd~Vl~~~p~~~~~ 144 (301)
+..|.|-+ | +-++..-++++. +++-.|--+-.++|.+-+.++.+.. ++..+|+++.-.|+.+
T Consensus 108 yTaYTPYQpEisQG~Lqal~e~Qtmi~~Lt------Gm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~ 181 (954)
T PRK12566 108 YTAYTPYQPEIAQGRLEALLNFQQMTIDLT------GLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQT 181 (954)
T ss_pred hhcCCCCCchhhhHHHHHHHHHHHHHHHHh------CchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHH
Confidence 55676633 3 334455566665 3444465666666665554444442 2357899999999887
Q ss_pred HHHHH----hcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 145 EGIAQ----RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 145 ~~~~~----~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
..+++ ..|++++. +++++.+++++.++++.+|+. .|.+-+ +++|++.++++|.++|
T Consensus 182 ~~v~~t~~~~~g~~i~~-------------~~~~~~~~~~~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~gal~~ 241 (954)
T PRK12566 182 LSVLRTRAEGFGFELVV-------------DAVDNLAAHAVFGALLQYPDT-HGEIRD---LRPLIDQLHGQQALAC 241 (954)
T ss_pred HHHHHHhhhcCCcEEEE-------------cchhhcCCCCEEEEEEECCCC-ceEEcc---HHHHHHHHHHcCCEEE
Confidence 76554 34555543 334444545677788888874 788855 8999999999998766
No 390
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=95.81 E-value=0.19 Score=48.06 Aligned_cols=140 Identities=16% Similarity=0.170 Sum_probs=94.4
Q ss_pred CCCCC---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH-----HHHHHHHHHHhc-CCC----CEEEEcCCCCcch
Q 022213 78 NCYAT---NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC-----KQAVEVILSVLA-RPG----ANVLLPRPGWPYY 144 (301)
Q Consensus 78 ~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~-----~~al~~~~~~l~-~~g----d~Vl~~~p~~~~~ 144 (301)
+-|.| .+|+.++-+.+.++|..- ..-|++.+-+++ ..++ .++++.. ..| ...++|...|...
T Consensus 569 HPF~P~eQaqGY~~lf~~Le~~Lc~i----TG~D~~s~QPNsGA~GEYaGL-~~IRaY~~~kge~hRnvClIPvSAHGTN 643 (1001)
T KOG2040|consen 569 HPFAPVEQAQGYQQLFTELEKDLCEI----TGFDSFSLQPNSGAQGEYAGL-RVIRAYLESKGEGHRNVCLIPVSAHGTN 643 (1001)
T ss_pred CCCCchHHHhhHHHHHHHHHHHhhee----ecccceeecCCCCcccchhhH-HHHHHHHHhccCCcceeEEEeecccCCC
Confidence 34544 457777777777777441 234566653322 2333 3344443 344 3577888888877
Q ss_pred HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccC
Q 022213 145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEV 221 (301)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~ 221 (301)
...++.+|.+++++..+...+ +|..+|+....+ +-.++.++.|+. .|+. .+.+++++++.++||--+..|.+
T Consensus 644 PASA~MagmkvvpV~~~~~G~--id~~dLk~kaekh~~~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHehGGQVYlDGA 718 (1001)
T KOG2040|consen 644 PASAAMAGMKVVPVGCDANGN--IDMVDLKAKAEKHKDNLAALMVTYPST-HGVF--EEGIDDICDIIHEHGGQVYLDGA 718 (1001)
T ss_pred hhhHHhcCCEEEEeeccCCCC--ccHHHHHHHHHHhhhhhheeEEecccc-cccc--cccHHHHHHHHHhcCCEEEecCC
Confidence 888899999999998866544 899999887654 334667777753 2332 34699999999999999999998
Q ss_pred Cccccc
Q 022213 222 YGHLTF 227 (301)
Q Consensus 222 y~~~~~ 227 (301)
.-.-..
T Consensus 719 NMNAqV 724 (1001)
T KOG2040|consen 719 NMNAQV 724 (1001)
T ss_pred Ccccee
Confidence 776443
No 391
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=95.81 E-value=0.16 Score=45.26 Aligned_cols=208 Identities=12% Similarity=0.024 Sum_probs=102.9
Q ss_pred CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC-----C-CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213 42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA-----T-NSGIPPARRAIADYLSRDLPYKLSADDVYVTLG 115 (301)
Q Consensus 42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~-----~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g 115 (301)
+.+.||+.| |. ..|+.+.+.+++-+.+.....++ . ..-...+.+...+.+.+-++++-+-+=+++-.|
T Consensus 4 ~~~~nFsaG-Pa-----~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGG 77 (365)
T COG1932 4 PRVYNFSAG-PA-----ALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGG 77 (365)
T ss_pred CCCCCCCCC-cc-----cCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCc
Confidence 567899999 32 23456666655555432211111 1 001122223333333333343322223455667
Q ss_pred HHHHHHHHHHHhcCCCC--EEEEcCCCCcchHHHHHhcCceEEEeecC-CC--CCCCCCHHHHHhhcccCccEEEEcCCC
Q 022213 116 CKQAVEVILSVLARPGA--NVLLPRPGWPYYEGIAQRKQVEVRHFDLL-PE--RNWEVDLDAVEALADKNTAAMVIINPG 190 (301)
Q Consensus 116 ~~~al~~~~~~l~~~gd--~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~v~l~~p~ 190 (301)
+|..+.++...|+..+. .|..-..+-.++ ..++..+..+...... .+ .+..++++.+. ++++..-|.+|.=.
T Consensus 78 at~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~-~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~Ne 154 (365)
T COG1932 78 ATGQFAMAPMNLLGKRGTDYVDTGAWSEFAI-KEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNE 154 (365)
T ss_pred cHHHHHHHHHhhhcccCceeEeeeehhHhHH-HHHHHhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCC
Confidence 79999999999985443 244444333343 3334444321111111 11 22234444333 22222114444444
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCC
Q 022213 191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPN 270 (301)
Q Consensus 191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~ 270 (301)
.-+|+-++ +...+. .+.+++.|....-+. ++..+..++ ++..|.-|.+|..| ++.+++++
T Consensus 155 Ti~Gv~v~--~~p~~~-----~~~~~v~D~SS~ils----r~iDvsk~d-----viyagaQKnlGpaG--ltvvIvr~-- 214 (365)
T COG1932 155 TISGVEVP--ELPDIG-----SDGLLVADASSAILS----RPIDVSKYD-----VIYAGAQKNLGPAG--LTVVIVRP-- 214 (365)
T ss_pred cccceEcc--CCCCCC-----CCceEEEecccHHhc----CCCChhHcc-----eEEEehhhccCccc--eEEEEEcH--
Confidence 45677655 111111 127888898877644 334444443 66779999999888 77777743
Q ss_pred CcccchhHHHHHHh
Q 022213 271 GIFQKSGIIDSIKD 284 (301)
Q Consensus 271 ~~~~~~~~~~~~~~ 284 (301)
++++++..
T Consensus 215 ------~~l~r~~~ 222 (365)
T COG1932 215 ------DLLERAES 222 (365)
T ss_pred ------HHHhcccc
Confidence 46666544
No 392
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=95.27 E-value=0.061 Score=47.59 Aligned_cols=86 Identities=21% Similarity=0.274 Sum_probs=57.6
Q ss_pred CHHHHHhhccc-----CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213 169 DLDAVEALADK-----NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241 (301)
Q Consensus 169 ~~~~l~~~~~~-----~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~ 241 (301)
.++++++.+.+ .+.+.++.-| +...|- -.+++..+++-++++||++.+|+||+.-.-.-++ .++....++..
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG-k~WaHehw~l~ 332 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG-KFWAHEHWNLD 332 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC-ceeeehhcCCC
Confidence 35566666642 3556677777 444443 5678899999999999999999999997644333 34444444332
Q ss_pred --CCEEEEecCcccCCCCc
Q 022213 242 --VPVITLGSISKRWLVPG 258 (301)
Q Consensus 242 --~~vi~~~s~SK~~~~~G 258 (301)
.+++ +|||-|-..|
T Consensus 333 ~PpD~v---TFSKK~q~gG 348 (484)
T KOG1405|consen 333 SPPDVV---TFSKKFQTGG 348 (484)
T ss_pred CCccce---ehhhhhhcCc
Confidence 2355 8999976554
No 393
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=94.63 E-value=0.81 Score=39.95 Aligned_cols=206 Identities=15% Similarity=0.103 Sum_probs=125.8
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCCCCC-------CHHHHHHHHHHHhhhCCCCCCCCCEE
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG-KFNCYATNSG-------IPPARRAIADYLSRDLPYKLSADDVY 111 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g-------~~~lr~~ia~~l~~~~~~~~~~~~i~ 111 (301)
+++++|-|..+.-+ ..|..+...+..-++.+ +...|+...| ......-++... +...++|.
T Consensus 64 ~d~~~iYlcGNSLG-----LmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iV------GA~e~Eva 132 (465)
T KOG3846|consen 64 DDKPVIYLCGNSLG-----LMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIV------GAQENEVA 132 (465)
T ss_pred CCCCeEEEeccccc-----cCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhc------cCCchhhh
Confidence 35566666544322 23445555565555542 1223333223 233444444443 45677999
Q ss_pred EcCCHHHHHHHHHHHhcCCC---CEEEEcCCCCcc----hHHHHHhcCceEE--EeecCCC-CCCCCCHHHHHhhcccC-
Q 022213 112 VTLGCKQAVEVILSVLARPG---ANVLLPRPGWPY----YEGIAQRKQVEVR--HFDLLPE-RNWEVDLDAVEALADKN- 180 (301)
Q Consensus 112 ~t~g~~~al~~~~~~l~~~g---d~Vl~~~p~~~~----~~~~~~~~g~~~~--~~~~~~~-~~~~~~~~~l~~~~~~~- 180 (301)
+.++-|--+..++.++.+|- -+|+++.-.|++ ....++.+|+.+. ++-+.+. ....+..+++.+.+.++
T Consensus 133 vmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkng 212 (465)
T KOG3846|consen 133 VMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNG 212 (465)
T ss_pred hHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcC
Confidence 99999999999999998864 468888877764 3456677776532 2222232 22345666666666543
Q ss_pred --ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213 181 --TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG 258 (301)
Q Consensus 181 --~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G 258 (301)
..+|+++..+.-||..++ +.+|-..-+..|+++=.|-+++. +.-+.-+..++-+ +.|++.-|......
T Consensus 213 DeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHAv----gNVpL~LHdWgVD---FACWCSYKYlnaGa 282 (465)
T KOG3846|consen 213 DEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHAV----GNVPLQLHDWGVD---FACWCSYKYLNAGA 282 (465)
T ss_pred CeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhhh----cCCceEEeecCCc---eEEEeeecccccCC
Confidence 345677888999999999 77776544566889888988875 2234444455544 88889889754432
Q ss_pred ceeEEEEe
Q 022213 259 WRFGWLVT 266 (301)
Q Consensus 259 ~rvG~~~~ 266 (301)
-.+|-+.+
T Consensus 283 GgIgGlFv 290 (465)
T KOG3846|consen 283 GGIGGLFV 290 (465)
T ss_pred Cccceeee
Confidence 23444444
No 394
>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]
Probab=85.96 E-value=5.2 Score=34.35 Aligned_cols=135 Identities=17% Similarity=0.190 Sum_probs=75.1
Q ss_pred HHHHHHHhc--CCCC-EEEEcCCCCcchHHHHHhcCceEEEeecCCC-CCCCCCHHHHHhhcccC-cc-EEEEcCCCCCc
Q 022213 120 VEVILSVLA--RPGA-NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWEVDLDAVEALADKN-TA-AMVIINPGNPC 193 (301)
Q Consensus 120 l~~~~~~l~--~~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~-~v~l~~p~npt 193 (301)
+.+++.++. +|.. .|+-+.-.-.+.....-.+|.+++.+....+ +...-|++.++..+.+. .. .+++.+ ....
T Consensus 89 lslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~s-ttsc 167 (432)
T KOG3843|consen 89 LSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHS-TTSC 167 (432)
T ss_pred HHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEee-cccc
Confidence 444444553 4543 3443433333444555668888877765333 23345778888777652 33 233322 1111
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCE-EEEecCcccCCCC
Q 022213 194 GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV-ITLGSISKRWLVP 257 (301)
Q Consensus 194 G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~v-i~~~s~SK~~~~~ 257 (301)
=..-+++.+++|+.+|..|++.-|+.++|+.-.- +....+..-..-+++ -++.|+-|.|..|
T Consensus 168 fapr~pd~leaiaaica~~diphivnnayglqse--e~i~~iaa~~~~grida~vqsldknf~vp 230 (432)
T KOG3843|consen 168 FAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSE--ECIHKIAAAAECGRIDAFVQSLDKNFMVP 230 (432)
T ss_pred cCCCCCchHHHHHHHHHccCchhhhccccccchH--HHHHHHHHHhhhccHHHHHHHhhhcceee
Confidence 1223456899999999999999999999985211 111111111111222 5667899998877
No 395
>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]
Probab=84.86 E-value=26 Score=30.61 Aligned_cols=194 Identities=13% Similarity=0.039 Sum_probs=97.4
Q ss_pred CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC-----CC--CCCCCC---CHHHHHHHHHHHhhhCCCCCCCCCE
Q 022213 41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF-----NC--YATNSG---IPPARRAIADYLSRDLPYKLSADDV 110 (301)
Q Consensus 41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~-----~~--Y~~~~g---~~~lr~~ia~~l~~~~~~~~~~~~i 110 (301)
+..++||+.| |. .+|..|...+++-+-+-.. .+ ..+..+ +.+....+.+++ +++-.-+-+
T Consensus 5 ~~~vvnFaaG-PA-----klp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLl----niPdn~~vl 74 (370)
T KOG2790|consen 5 PERVVNFAAG-PA-----KLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELL----NIPDNYKVL 74 (370)
T ss_pred ccceeecCCC-cc-----cCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHH----cCCCceeEE
Confidence 5789999998 32 3456666666654432110 00 111111 223333444444 322222234
Q ss_pred EEcCCHHHHHHHHHHHhc--CCC---CEEEEcCCCCcchHHHHHhcCceEEEeecCCCC-CCCCCHHHHHhhcccCccEE
Q 022213 111 YVTLGCKQAVEVILSVLA--RPG---ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER-NWEVDLDAVEALADKNTAAM 184 (301)
Q Consensus 111 ~~t~g~~~al~~~~~~l~--~~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~v 184 (301)
++-.|+|.-+.++...|+ +-| |.|+.-+++--.+...-+......+..+.-... +-.+|.+.++.. .+.+-+
T Consensus 75 f~QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~~--~da~yv 152 (370)
T KOG2790|consen 75 FLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWELN--PDASYV 152 (370)
T ss_pred EEeCCCcccccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhcccC--CCccEE
Confidence 566777777777777776 334 667766655545444333333333333332211 123455555432 223345
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213 185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF 261 (301)
Q Consensus 185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv 261 (301)
++|.-...-|+-++ .+- +-.-++.+++.|-+.-.+. ++..+..++ +++.+.-|..|.+|+-+
T Consensus 153 yyCaNETVHGVEf~-----~~P-~~~~~~~vlVaDmSSnflS----rpvDvsk~g-----vi~aGAQKN~G~aG~Tv 214 (370)
T KOG2790|consen 153 YYCANETVHGVEFD-----FIP-VNDPKGAVLVADMSSNFLS----RPVDVSKFG-----VIFAGAQKNVGPAGVTV 214 (370)
T ss_pred EEecCceeeceecC-----CCC-CCCCCCceEEEecccchhc----CCccchhcc-----eEEeccccccCccccEE
Confidence 55543333355433 111 1124577888887766543 333344333 88899999999888544
No 396
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=81.95 E-value=14 Score=30.75 Aligned_cols=91 Identities=18% Similarity=0.123 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCCCEEE-EcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcc
Q 022213 116 CKQAVEVILSVLARPGANVL-LPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCG 194 (301)
Q Consensus 116 ~~~al~~~~~~l~~~gd~Vl-~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG 194 (301)
+..+- .++++|.+.+-.|. +..+.-......++..|.+++..++ -|.+.|.++++ ....++++.+.+.
T Consensus 8 G~~G~-~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~-------~~~~~l~~al~-g~d~v~~~~~~~~-- 76 (233)
T PF05368_consen 8 GNQGR-SVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADY-------DDPESLVAALK-GVDAVFSVTPPSH-- 76 (233)
T ss_dssp SHHHH-HHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-T-------T-HHHHHHHHT-TCSEEEEESSCSC--
T ss_pred cHHHH-HHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeeccc-------CCHHHHHHHHc-CCceEEeecCcch--
Confidence 44443 45555555664443 4444422234455678888876554 37888988887 4666666665432
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEE
Q 022213 195 NVFTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 195 ~~~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
....+.-..+++.|++.|+-.++
T Consensus 77 -~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 77 -PSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp -CCHHHHHHHHHHHHHHHT-SEEE
T ss_pred -hhhhhhhhhHHHhhhccccceEE
Confidence 23345678899999998875443
No 397
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=80.87 E-value=15 Score=29.16 Aligned_cols=90 Identities=23% Similarity=0.159 Sum_probs=54.4
Q ss_pred EEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCC
Q 022213 110 VYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP 189 (301)
Q Consensus 110 i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 189 (301)
|+++.++...=..+++.|.+.|-+|....-.-..... ..++++...++ .|.+.+.++++ +..+++.+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~-------~d~~~~~~al~-~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDL-------FDPDSVKAALK-GADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCT-------TCHHHHHHHHT-TSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeee-------hhhhhhhhhhh-hcchhhhhhh
Confidence 3444443333445666666666666654433332222 45666655443 57788888887 5666666654
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCC
Q 022213 190 GNPCGNVFTYHHLQEIAEMARKLRV 214 (301)
Q Consensus 190 ~nptG~~~~~~~l~~i~~~~~~~~~ 214 (301)
.++. +....+.+++.|++.++
T Consensus 70 ~~~~----~~~~~~~~~~a~~~~~~ 90 (183)
T PF13460_consen 70 PPPK----DVDAAKNIIEAAKKAGV 90 (183)
T ss_dssp STTT----HHHHHHHHHHHHHHTTS
T ss_pred hhcc----ccccccccccccccccc
Confidence 4333 26778899999998886
No 398
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=79.46 E-value=27 Score=29.24 Aligned_cols=99 Identities=17% Similarity=0.255 Sum_probs=63.8
Q ss_pred CEEEcCCHHHHHHHHHHHhcCCCCEEE-----EcCCC--Cc-------chHHHHHhcCceEEEeecCCCCCCCCCHHHHH
Q 022213 109 DVYVTLGCKQAVEVILSVLARPGANVL-----LPRPG--WP-------YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVE 174 (301)
Q Consensus 109 ~i~~t~g~~~al~~~~~~l~~~gd~Vl-----~~~p~--~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 174 (301)
-+.+-+|+..+..++..++. .|..|. .+.-. |. .....++..|+.+...+...+ ..-..++|.
T Consensus 3 ~~aL~SGGKDS~~Al~~a~~-~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~--~e~eve~L~ 79 (223)
T COG2102 3 VIALYSGGKDSFYALYLALE-EGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGE--EEREVEELK 79 (223)
T ss_pred EEEEEecCcHHHHHHHHHHH-cCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCcc--chhhHHHHH
Confidence 36678888999877777764 443322 12111 21 123455677888887765331 223556666
Q ss_pred hhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 175 ALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 175 ~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
++++. +..+++ +|.+.+..++..+=.+|++.|+.++
T Consensus 80 ~~l~~l~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~~ 116 (223)
T COG2102 80 EALRRLKVDGIV-------AGAIASEYQKERVERLCEELGLKVY 116 (223)
T ss_pred HHHHhCcccEEE-------EchhhhHHHHHHHHHHHHHhCCEEe
Confidence 66653 344555 8999999999999999999998654
No 399
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.40 E-value=30 Score=30.35 Aligned_cols=99 Identities=15% Similarity=0.099 Sum_probs=57.8
Q ss_pred CCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH---HHhcCceEEEeecCCCCCCCCCHHHHHh---hc
Q 022213 104 KLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI---AQRKQVEVRHFDLLPERNWEVDLDAVEA---LA 177 (301)
Q Consensus 104 ~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~l~~---~~ 177 (301)
.+..+-+++|.|++..-..+..-+.+.|-++++.+-.-.+..+. ++..| ++..+-++-. +.|++.+ .+
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis-----~~eei~~~a~~V 108 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDIS-----DREEIYRLAKKV 108 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCC-----CHHHHHHHHHHH
Confidence 35566778888887777777777888888877665544444333 33334 4444433322 3344443 33
Q ss_pred cc--CccEEEEcCC---CCCcccCCCHHHHHHHHHH
Q 022213 178 DK--NTAAMVIINP---GNPCGNVFTYHHLQEIAEM 208 (301)
Q Consensus 178 ~~--~~~~v~l~~p---~nptG~~~~~~~l~~i~~~ 208 (301)
++ ...-++++|. +.-...-.+.+++++..++
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~v 144 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDV 144 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHH
Confidence 33 3344667775 2334455788888886554
No 400
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=78.32 E-value=48 Score=32.50 Aligned_cols=100 Identities=15% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCCcchHHHHHh----cCceEEEeecCCCCCCCCCHHHHHhhccc
Q 022213 105 LSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRPGWPYYEGIAQR----KQVEVRHFDLLPERNWEVDLDAVEALADK 179 (301)
Q Consensus 105 ~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (301)
++..|.-+-.-+|.|-++...+.. .++.++++..-+|+....+++- .|++++. .|+++.... .+
T Consensus 178 L~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~----------~~~~~~~~s-~~ 246 (1001)
T KOG2040|consen 178 LPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVV----------SDIKEADYS-SK 246 (1001)
T ss_pred CcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEe----------cCHHHhhcc-cc
Confidence 444555554444555444444432 4567799999999987666642 2233221 233332221 22
Q ss_pred CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEc
Q 022213 180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVAD 219 (301)
Q Consensus 180 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D 219 (301)
+...+++..|.. -|.+.+ ..++++.+++.+.++++-
T Consensus 247 ~v~gvlvQYP~t-~G~i~d---~~el~~~a~~~~s~vv~a 282 (1001)
T KOG2040|consen 247 DVSGVLVQYPDT-EGSVLD---FDELVELAHANGSLVVMA 282 (1001)
T ss_pred ceeEEEEEcCCC-CCcccC---HHHHHHHhhccCceEEEe
Confidence 455677777764 678888 777778888888776643
No 401
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=75.09 E-value=48 Score=29.86 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=60.8
Q ss_pred CCCEEEcCCHHHHHHHHHHHhcCCCCEEE--EcCCCCc------chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc
Q 022213 107 ADDVYVTLGCKQAVEVILSVLARPGANVL--LPRPGWP------YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD 178 (301)
Q Consensus 107 ~~~i~~t~g~~~al~~~~~~l~~~gd~Vl--~~~p~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (301)
.+-++..+||-.+..++......-|..++ ..++.|. ....+++..|+....+.+ +.+.+.....
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~--------d~~~~~~l~~ 131 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITI--------NPETFRKLQR 131 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeC--------CHHHHHHHHH
Confidence 45677788888887666433223354443 4566664 234555668888776653 4444443322
Q ss_pred cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213 179 KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF 227 (301)
Q Consensus 179 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~ 227 (301)
... .+..+|...+. ......+.++|+++|+.+|+..-..+-.|
T Consensus 132 ~~~-----~~~~~pc~~c~-~~~~~~l~~~A~~~gi~~Il~G~~~dE~f 174 (343)
T TIGR03573 132 AYF-----KKVGDPEWPQD-HAIFASVYQVALKFNIPLIIWGENIAEEY 174 (343)
T ss_pred HHH-----hccCCCchhhh-hHHHHHHHHHHHHhCCCEEEeCCCHHHhc
Confidence 111 12233332222 23357788899999999888766665444
No 402
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.34 E-value=45 Score=29.94 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=50.7
Q ss_pred CCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 138 RPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 138 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
.-.|.+|..+++...++++++..... ...+..-.++. +.|.|++.-| ..++.++.++|++.|+++|++ +
T Consensus 58 ~k~y~syEeLakd~~vDvVyi~~~~~----qH~evv~l~l~-~~K~VL~EKP-----la~n~~e~~~iveaA~~rgv~-~ 126 (351)
T KOG2741|consen 58 PKAYGSYEELAKDPEVDVVYISTPNP----QHYEVVMLALN-KGKHVLCEKP-----LAMNVAEAEEIVEAAEARGVF-F 126 (351)
T ss_pred CccccCHHHHhcCCCcCEEEeCCCCc----cHHHHHHHHHH-cCCcEEeccc-----ccCCHHHHHHHHHHHHHcCcE-E
Confidence 44788899999999999999876432 23333333332 3444554444 246788999999999999954 4
Q ss_pred EccCCcc
Q 022213 218 ADEVYGH 224 (301)
Q Consensus 218 ~D~~y~~ 224 (301)
.|..+.-
T Consensus 127 meg~~~R 133 (351)
T KOG2741|consen 127 MEGLWWR 133 (351)
T ss_pred Eeeeeee
Confidence 5555543
No 403
>PRK10595 SOS cell division inhibitor; Provisional
Probab=74.30 E-value=42 Score=26.71 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=62.1
Q ss_pred CEEEc---CCHHH-HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213 109 DVYVT---LGCKQ-AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM 184 (301)
Q Consensus 109 ~i~~t---~g~~~-al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 184 (301)
+|+.. .|-.+ .+.=++..+...+.-|+.-.|-+..+...+...|+....+-......-.-.+..+|++++......
T Consensus 30 Ell~~~~qpg~~e~LLlP~L~~l~~~~rwilwI~PP~~p~~~~L~~~Gl~l~rvl~v~~~~~~d~Lwa~EqaLrsG~~~a 109 (164)
T PRK10595 30 ELVYREDQPMMTQLLLLPLLQQLGQQSRWQLWLTPQQKLSREWLQASGLPLTKVMQLSQLSPCHTVEAMERALRTGNYSV 109 (164)
T ss_pred EEeecCCCchHHHHHHHHHHHHHhccCceEEEECCCCCCCHHHHHHcCCCcccEEEEecCCcHHHHHHHHHHHhhCCCcE
Confidence 45553 44444 333333334445667888888888889999999987555443222221234567788888777666
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 022213 185 VIINPGNPCGNVFTYHHLQEIAEMARKLRV 214 (301)
Q Consensus 185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~ 214 (301)
+++-..+ -++.++++++--.|++.+.
T Consensus 110 VL~Wlp~----~l~~~~~RRLQlAAe~g~~ 135 (164)
T PRK10595 110 VLGWLPD----ELTEEEHARLVDAAQEGNA 135 (164)
T ss_pred EEECCcc----cCCHHHHHHHHHHHHhCCC
Confidence 6665321 2456778888776766654
No 404
>PLN02591 tryptophan synthase
Probab=73.71 E-value=57 Score=27.95 Aligned_cols=157 Identities=13% Similarity=0.206 Sum_probs=91.0
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH---
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC--- 116 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~--- 116 (301)
.+-++|.|++.=.+ | +..=+.++++..+++.++. .+..+.+.+.++-.+ . ++ .=|++|--.
T Consensus 28 ~Gad~iElGiPfSD--P-~aDGpvIq~a~~rAL~~G~--------~~~~~~~~~~~~r~~-~--~~--p~ilm~Y~N~i~ 91 (250)
T PLN02591 28 CGADVIELGVPYSD--P-LADGPVIQAAATRALEKGT--------TLDSVISMLKEVAPQ-L--SC--PIVLFTYYNPIL 91 (250)
T ss_pred CCCCEEEECCCCCC--C-cccCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHhcC-C--CC--CEEEEecccHHH
Confidence 47899999887222 1 2222567777788886432 123444555444311 1 11 113433322
Q ss_pred HHHHHHHHHHhcCCC-CEEEEcCCCCc---chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCC
Q 022213 117 KQAVEVILSVLARPG-ANVLLPRPGWP---YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNP 192 (301)
Q Consensus 117 ~~al~~~~~~l~~~g-d~Vl~~~p~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np 192 (301)
.-+++..+..+.+.| |.|++++--+. .+...++.+|+..+++=. +. .+.+.++...+....-+++..-.-.
T Consensus 92 ~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~-Pt----t~~~ri~~ia~~~~gFIY~Vs~~Gv 166 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTT-PT----TPTERMKAIAEASEGFVYLVSSTGV 166 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeC-CC----CCHHHHHHHHHhCCCcEEEeeCCCC
Confidence 236666677776667 89999987765 355667788888776532 11 3445566655444444555455666
Q ss_pred cccCCC-HHHHHHHHHHHHhC-CCeEE
Q 022213 193 CGNVFT-YHHLQEIAEMARKL-RVMVV 217 (301)
Q Consensus 193 tG~~~~-~~~l~~i~~~~~~~-~~~ii 217 (301)
||..-. .++++++++.++++ ++.++
T Consensus 167 TG~~~~~~~~~~~~i~~vk~~~~~Pv~ 193 (250)
T PLN02591 167 TGARASVSGRVESLLQELKEVTDKPVA 193 (250)
T ss_pred cCCCcCCchhHHHHHHHHHhcCCCceE
Confidence 776433 46788877777775 55555
No 405
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=73.34 E-value=51 Score=27.23 Aligned_cols=96 Identities=23% Similarity=0.223 Sum_probs=55.6
Q ss_pred CCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213 105 LSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM 184 (301)
Q Consensus 105 ~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 184 (301)
+....|++..|+..|...+ +.|++.|-.|.+.+|....-...+...| ++..+. .. ...+.+. ...+
T Consensus 7 l~gk~vlVvGgG~va~rk~-~~Ll~~ga~VtVvsp~~~~~l~~l~~~~-~i~~~~----~~--~~~~dl~------~~~l 72 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKA-RLLLKAGAQLRVIAEELESELTLLAEQG-GITWLA----RC--FDADILE------GAFL 72 (205)
T ss_pred cCCCeEEEECcCHHHHHHH-HHHHHCCCEEEEEcCCCCHHHHHHHHcC-CEEEEe----CC--CCHHHhC------CcEE
Confidence 4556888888888887555 5666778788877787653322233333 333332 11 2223322 2334
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeE-EEccC
Q 022213 185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMV-VADEV 221 (301)
Q Consensus 185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~i-i~D~~ 221 (301)
++..++++. --++|.+.|++.++++ ++|+.
T Consensus 73 Vi~at~d~~-------ln~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 73 VIAATDDEE-------LNRRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred EEECCCCHH-------HHHHHHHHHHHcCCEEEECCCc
Confidence 455565542 2467889999999887 34544
No 406
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=72.41 E-value=69 Score=28.27 Aligned_cols=107 Identities=22% Similarity=0.235 Sum_probs=65.5
Q ss_pred CCCCCEEEcCCHHHHHHHHHHHhcCCCC--EEEEc--CCCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc
Q 022213 105 LSADDVYVTLGCKQAVEVILSVLARPGA--NVLLP--RPGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD 178 (301)
Q Consensus 105 ~~~~~i~~t~g~~~al~~~~~~l~~~gd--~Vl~~--~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (301)
+...++++|.+.+.+...++....+.|. +|++. .|.+.+. ...++..|+++..+. | ...-..++
T Consensus 117 i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~---------D-sa~~~~~~ 186 (301)
T COG1184 117 IHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIV---------D-SAVGAFMS 186 (301)
T ss_pred ccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEe---------c-hHHHHHHH
Confidence 4566899999999888888888877775 45544 5666654 345566787776653 2 22222222
Q ss_pred cCccEEEEc-CCCCCcccCCCHHHHHHHHHHHHhCCCeEEE-ccCC
Q 022213 179 KNTAAMVII-NPGNPCGNVFTYHHLQEIAEMARKLRVMVVA-DEVY 222 (301)
Q Consensus 179 ~~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~-D~~y 222 (301)
+...+++- +.---.|..+++---..|+-.|++++.++++ =+.|
T Consensus 187 -~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesy 231 (301)
T COG1184 187 -RVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESY 231 (301)
T ss_pred -hCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeee
Confidence 34444442 2223345666655567788888999886643 3444
No 407
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=71.41 E-value=10 Score=33.92 Aligned_cols=68 Identities=18% Similarity=0.363 Sum_probs=41.8
Q ss_pred HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 146 GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 146 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
......++....+.+..+.+|.+..+.+.++-.... ......+.|..++.+++++|++.|+++++-||
T Consensus 25 d~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga----~~~~~~~~~~~YT~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 25 DLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGG----STEVGGGPGGYYTQEDYKDIVAYAAERHITVV 92 (329)
T ss_pred HHHHHhCCcEEEEEeecCCcceeeecCccccccccc----ccccCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 344456666666666544555554444333221111 01123456778999999999999999999776
No 408
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=71.27 E-value=52 Score=27.40 Aligned_cols=95 Identities=23% Similarity=0.378 Sum_probs=57.2
Q ss_pred CCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCC-cchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213 105 LSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGW-PYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA 183 (301)
Q Consensus 105 ~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (301)
+....|++..||..|..-+ +.|++.|..|.+-.|.. +....+.+..++... ++. ++.+.+.. ...
T Consensus 10 l~~k~VlvvGgG~va~rKa-~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~------~~~--~~~~~~~~-----~~l 75 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKA-RLLLKAGADVTVVSPEFEPELKALIEEGKIKWI------ERE--FDAEDLDD-----AFL 75 (210)
T ss_pred cCCCEEEEECCCHHHHHHH-HHHHhcCCEEEEEcCCccHHHHHHHHhcCcchh------hcc--cChhhhcC-----ceE
Confidence 4566799999999998755 45667888999888888 333444443332211 111 34444332 334
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeE-EEccC
Q 022213 184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMV-VADEV 221 (301)
Q Consensus 184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~i-i~D~~ 221 (301)
++++..+ + +.=++|.+.|+++++++ ++|+.
T Consensus 76 viaAt~d-~-------~ln~~i~~~a~~~~i~vNv~D~p 106 (210)
T COG1648 76 VIAATDD-E-------ELNERIAKAARERRILVNVVDDP 106 (210)
T ss_pred EEEeCCC-H-------HHHHHHHHHHHHhCCceeccCCc
Confidence 4444332 2 33588999999998766 44444
No 409
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=70.68 E-value=70 Score=27.66 Aligned_cols=156 Identities=13% Similarity=0.236 Sum_probs=86.4
Q ss_pred CCCCeeeccCC--CCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH-
Q 022213 40 DPRPVVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC- 116 (301)
Q Consensus 40 ~~~~~i~l~~g--~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~- 116 (301)
.+-++|.+++. ||. ..=+.++++..++++++. ....+.+.+.+.- +.. ++ .=+++|--.
T Consensus 41 ~Gad~iElGiPfSDP~-----aDGpvIq~a~~rAL~~g~--------~~~~~~~~~~~~r-~~~--~~--p~vlm~Y~N~ 102 (263)
T CHL00200 41 KGADIIELGIPYSDPL-----ADGPIIQEASNRALKQGI--------NLNKILSILSEVN-GEI--KA--PIVIFTYYNP 102 (263)
T ss_pred CCCCEEEECCCCCCCC-----ccCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHh-cCC--CC--CEEEEecccH
Confidence 46788888776 432 222566777777776321 1234444444432 111 11 123444332
Q ss_pred --HHHHHHHHHHhcCCC-CEEEEcCCCCc---chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCC
Q 022213 117 --KQAVEVILSVLARPG-ANVLLPRPGWP---YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPG 190 (301)
Q Consensus 117 --~~al~~~~~~l~~~g-d~Vl~~~p~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~ 190 (301)
.-+++..+.-+.+.| |.|++++--+. .+...++.+|+..+++=. + . -..+.++...+.-.--+++.+-.
T Consensus 103 i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~-P-t---T~~eri~~i~~~a~gFIY~vS~~ 177 (263)
T CHL00200 103 VLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIA-P-T---SSKSRIQKIARAAPGCIYLVSTT 177 (263)
T ss_pred HHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEEC-C-C---CCHHHHHHHHHhCCCcEEEEcCC
Confidence 225555666666666 88998887665 345677888888776532 2 1 24566666554433234444455
Q ss_pred CCcccCCC-HHHHHHHHHHHHhC-CCeEEE
Q 022213 191 NPCGNVFT-YHHLQEIAEMARKL-RVMVVA 218 (301)
Q Consensus 191 nptG~~~~-~~~l~~i~~~~~~~-~~~ii~ 218 (301)
-.||..-. .+.++++++.++++ +..+++
T Consensus 178 GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 178 GVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred CCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 56787422 25678888877765 555554
No 410
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=69.37 E-value=46 Score=29.09 Aligned_cols=99 Identities=13% Similarity=0.019 Sum_probs=55.0
Q ss_pred CCHHHHHhhccc-CccEEEEcCC-CCCcccCCC--------HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc
Q 022213 168 VDLDAVEALADK-NTAAMVIINP-GNPCGNVFT--------YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL 237 (301)
Q Consensus 168 ~~~~~l~~~~~~-~~~~v~l~~p-~nptG~~~~--------~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~ 237 (301)
.|.+.+.+.+++ ++.+|+=+-. ++....-.. ..--+.|++.|++.|..+|. +..+++|+|....+...
T Consensus 37 td~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVh--iSTDyVFDG~~~~~Y~E 114 (281)
T COG1091 37 TDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVH--ISTDYVFDGEKGGPYKE 114 (281)
T ss_pred cChHHHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEE--eecceEecCCCCCCCCC
Confidence 467778887765 4666554433 344433333 23457899999999988874 23345565554333333
Q ss_pred cCCCCCEEEEecCcccCCC----------CcceeEEEEeeCC
Q 022213 238 FGSIVPVITLGSISKRWLV----------PGWRFGWLVTNDP 269 (301)
Q Consensus 238 ~~~~~~vi~~~s~SK~~~~----------~G~rvG~~~~~~~ 269 (301)
-+.. +-+-+.+-||..|= -=+|.+|+.+...
T Consensus 115 ~D~~-~P~nvYG~sKl~GE~~v~~~~~~~~I~Rtswv~g~~g 155 (281)
T COG1091 115 TDTP-NPLNVYGRSKLAGEEAVRAAGPRHLILRTSWVYGEYG 155 (281)
T ss_pred CCCC-CChhhhhHHHHHHHHHHHHhCCCEEEEEeeeeecCCC
Confidence 2221 12334455664321 1268899987643
No 411
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=67.97 E-value=12 Score=33.08 Aligned_cols=67 Identities=27% Similarity=0.541 Sum_probs=40.3
Q ss_pred HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 146 GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 146 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
......+.....+.+....+|.+..+.+.++...... .++ .+.|-.++.+++++|++.|+++|+-||
T Consensus 23 d~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~----~~~-~~~~~~yT~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 23 DVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQ----INP-RSPGGFYTYAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred HHHHHhCCcEEEEeeecCCCceEeeCccchhhhhccc----ccC-CCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence 3444566666666665444554444433332211110 111 244668999999999999999998776
No 412
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=67.72 E-value=61 Score=27.09 Aligned_cols=160 Identities=18% Similarity=0.189 Sum_probs=86.3
Q ss_pred CCChHHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH----HHHHHhcCCCC
Q 022213 58 FRTAVEAEDAIVDAVRSGKF-NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE----VILSVLARPGA 132 (301)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~----~~~~~l~~~gd 132 (301)
++.-++..+.|++....-.. ..-+-..|.+.--+-+++.-.+.. +-.-++++-+.|.+.++- ..+.+|..|..
T Consensus 37 y~tve~av~~mk~y~~~~~~avSVGLGaGdp~Q~~~Va~Ia~~~~--P~HVNQvFtgag~sr~~Lg~~~T~vN~LvsPTG 114 (236)
T TIGR03581 37 YPTVEEAIEDMKKYQKEIDNAVSVGLGAGDPNQSAMVADISAHTQ--PQHINQVFTGVGTSRALLGQADTVINGLVSPTG 114 (236)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHHHcC--CccccccccchHHHHHHhCCccceEEEeecCCC
Confidence 56667777777776653221 122333355533333333332211 122346777777766653 44455554421
Q ss_pred ---EEEEc-CCCCc-------c---hHHHHHhcCc-eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCC
Q 022213 133 ---NVLLP-RPGWP-------Y---YEGIAQRKQV-EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVF 197 (301)
Q Consensus 133 ---~Vl~~-~p~~~-------~---~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~ 197 (301)
.|-+. -|.-. . ....++..|. .++++|+. + .-.++++....+.-.+--+ +--|||-+
T Consensus 115 ~~G~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~---G-l~~leE~~avA~aca~~g~---~lEPTGGI- 186 (236)
T TIGR03581 115 TPGLVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMG---G-LKHLEEYAAVAKACAKHGF---YLEPTGGI- 186 (236)
T ss_pred ccceEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecC---C-cccHHHHHHHHHHHHHcCC---ccCCCCCc-
Confidence 22222 22111 1 2344455654 47777762 2 2356666654432111111 13788876
Q ss_pred CHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213 198 TYHHLQEIAEMARKLRVMVVADEVYGHLTF 227 (301)
Q Consensus 198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~ 227 (301)
+.+..++|+++|.+.|+--|+--+|+....
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 888999999999999999888888887653
No 413
>PRK04296 thymidine kinase; Provisional
Probab=66.80 E-value=34 Score=27.77 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcc---hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc---cCccEEEEcCCC
Q 022213 117 KQAVEVILSVLARPGANVLLPRPGWPY---YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD---KNTAAMVIINPG 190 (301)
Q Consensus 117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~ 190 (301)
+.++..+.+.. ..|.+|++..|.+.. ....+...|.....+.. ...+++.+.+. .+..+|++...+
T Consensus 17 T~~l~~~~~~~-~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~-------~~~~~~~~~~~~~~~~~dvviIDEaq 88 (190)
T PRK04296 17 TELLQRAYNYE-ERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPV-------SSDTDIFELIEEEGEKIDCVLIDEAQ 88 (190)
T ss_pred HHHHHHHHHHH-HcCCeEEEEeccccccccCCcEecCCCCcccceEe-------CChHHHHHHHHhhCCCCCEEEEEccc
Confidence 45555544443 457788877664331 23344445543322111 12233333322 245677777663
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc
Q 022213 191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH 224 (301)
Q Consensus 191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~ 224 (301)
.++.+++.++++.+++.++.+|+=.-..+
T Consensus 89 -----~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 89 -----FLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred -----cCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 36667788899988888988877555544
No 414
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=66.38 E-value=85 Score=26.98 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=79.2
Q ss_pred CCCCeeeccCC--CCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH-
Q 022213 40 DPRPVVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC- 116 (301)
Q Consensus 40 ~~~~~i~l~~g--~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~- 116 (301)
.+-++|.+++. ||. ..=+.++++..+++.++. .+..+.+.+.+.-+... ++.-......+--
T Consensus 36 ~Gad~iElGiPfsDP~-----aDGpvIq~a~~~al~~G~--------~~~~~~~~v~~ir~~~~--~~plv~m~Y~Npi~ 100 (256)
T TIGR00262 36 AGADALELGVPFSDPL-----ADGPTIQAADLRALRAGM--------TPEKCFELLKKVRQKHP--NIPIGLLTYYNLIF 100 (256)
T ss_pred cCCCEEEECCCCCCCC-----CcCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHhcCC--CCCEEEEEeccHHh
Confidence 47888888876 442 222567777777776432 11233333333321101 2222222233321
Q ss_pred HHHHHHHHHHhcCCC-CEEEEcCCCCc---chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCC
Q 022213 117 KQAVEVILSVLARPG-ANVLLPRPGWP---YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNP 192 (301)
Q Consensus 117 ~~al~~~~~~l~~~g-d~Vl~~~p~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np 192 (301)
.-+++..+..+.+.| |.|++++-.+. .+...++.+|+....+-. +. .+.+.++...+.-...+++.+.+--
T Consensus 101 ~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~-P~----T~~eri~~i~~~~~gfiy~vs~~G~ 175 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVA-PN----ADDERLKQIAEKSQGFVYLVSRAGV 175 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEEC-CC----CCHHHHHHHHHhCCCCEEEEECCCC
Confidence 224555566666656 88888876554 334566778887664422 21 3456666655443323444344456
Q ss_pred cccC--CCHHHHHHHHHHHHhC-CCeEEE
Q 022213 193 CGNV--FTYHHLQEIAEMARKL-RVMVVA 218 (301)
Q Consensus 193 tG~~--~~~~~l~~i~~~~~~~-~~~ii~ 218 (301)
||.. ++.+ +.+.++.++++ +..+++
T Consensus 176 TG~~~~~~~~-~~~~i~~lr~~~~~pi~v 203 (256)
T TIGR00262 176 TGARNRAASA-LNELVKRLKAYSAKPVLV 203 (256)
T ss_pred CCCcccCChh-HHHHHHHHHhhcCCCEEE
Confidence 7764 4433 55555555543 444443
No 415
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=65.37 E-value=96 Score=27.26 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=36.9
Q ss_pred CCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc
Q 022213 168 VDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT 226 (301)
Q Consensus 168 ~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~ 226 (301)
.-++.++++.....+.+++.+-.. ..++-++|.++|+++|+.++==++...+.
T Consensus 77 ~v~~~l~e~~~~gvk~avI~s~Gf------~~~~~~~l~~~a~~~girvlGPNc~Gi~~ 129 (291)
T PRK05678 77 FAADAILEAIDAGIDLIVCITEGI------PVLDMLEVKAYLERKKTRLIGPNCPGIIT 129 (291)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHHcCCEEECCCCCcccc
Confidence 346777777777788766554332 24445689999999999999777766544
No 416
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=63.63 E-value=10 Score=37.00 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=29.4
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213 193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF 227 (301)
Q Consensus 193 tG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~ 227 (301)
|-..=++++++++++.|+++||-||+|-+|..+.-
T Consensus 207 ~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~ 241 (628)
T COG0296 207 TSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPP 241 (628)
T ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCC
Confidence 33344678899999999999999999999998753
No 417
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=63.14 E-value=18 Score=32.18 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.0
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 193 CGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 193 tG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
.|..++.+++++|++.|+++|+-||
T Consensus 61 ~~~~yT~~di~elv~yA~~rgI~vI 85 (311)
T cd06570 61 DGLYYTQEQIREVVAYARDRGIRVV 85 (311)
T ss_pred CCCccCHHHHHHHHHHHHHcCCEEE
Confidence 3567999999999999999998776
No 418
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=62.39 E-value=42 Score=22.08 Aligned_cols=60 Identities=15% Similarity=0.287 Sum_probs=37.4
Q ss_pred hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEc
Q 022213 144 YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT-YHHLQEIAEMARKLRVMVVAD 219 (301)
Q Consensus 144 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D 219 (301)
+..+++..|.++..+.. ..+.++ .....+++.+|... ++ .+++++|.++.++-|-++|+|
T Consensus 10 ~~~~L~~~g~~v~~~~~--------~~~~l~----~~~~tll~i~~~~~----~~~~~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 10 LYQLLEEQGVKVERWRK--------PYEALE----ADDGTLLVIGPDLR----LSEPEEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred HHHHHHHCCCeeEEecc--------cHHHhC----CCCCEEEEEeCCCC----CCchHHHHHHHHHHHcCCEEEEeC
Confidence 34566677777765431 233443 24455666666522 33 588999999998878777764
No 419
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=61.12 E-value=15 Score=33.15 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=38.5
Q ss_pred HHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 147 IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 147 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
.....++....+.+..+.+|.+..+.+.++.... ....|..++.+++++|++.|+++++-||
T Consensus 26 ~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~g---------a~~~~~~YT~~di~eiv~yA~~rgI~vI 87 (348)
T cd06562 26 AMAYNKLNVLHWHITDSQSFPLESPSYPELSKKG---------AYSPSEVYTPEDVKEIVEYARLRGIRVI 87 (348)
T ss_pred HHHHhCCcEEEEeEEcCCCceEeeCCCchhhhcc---------CcCCCceECHHHHHHHHHHHHHcCCEEE
Confidence 3344566666666544445545444333322111 1234678999999999999999998776
No 420
>TIGR00623 sula cell division inhibitor SulA. All proteins in this family for which the functions are known are cell division inhibitors. In E. coli, SulA is one of the SOS regulated genes.
Probab=60.46 E-value=87 Score=25.07 Aligned_cols=84 Identities=10% Similarity=0.008 Sum_probs=53.6
Q ss_pred HhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcC-CCCCcccCCCHHHHHH
Q 022213 126 VLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN-PGNPCGNVFTYHHLQE 204 (301)
Q Consensus 126 ~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~-p~nptG~~~~~~~l~~ 204 (301)
.+...+.-|+.-.|-+..+...+...|+....+-......-.-.++..|++++......+++- |+. ++.+++++
T Consensus 55 ~Ls~~~Rwlv~IaPP~~~~~~~L~~~Gl~l~rvlli~~~~~~d~lwa~EQaLrSG~c~aVL~WLp~~-----l~~~~lRR 129 (168)
T TIGR00623 55 QLGQQSRWQLWLTPQQKLSKEWVQSSGLPLTKVMQISQLSPCNTVESMIRALRTGNYSVVIGWLTDE-----LTEEEHAK 129 (168)
T ss_pred HhcccCceEEEECCCCccCHHHHHHcCCChhHEEEEecCCchhHHHHHHHHHHhCCCcEEEecCCcc-----CCHHHHHH
Confidence 333455667777777778888999999876555332211112346778888888776666665 432 56677888
Q ss_pred HHHHHHhCCC
Q 022213 205 IAEMARKLRV 214 (301)
Q Consensus 205 i~~~~~~~~~ 214 (301)
|--.++..+.
T Consensus 130 LqlAA~~G~a 139 (168)
T TIGR00623 130 LVRAAEEGNA 139 (168)
T ss_pred HHHHHHhCCC
Confidence 7666665554
No 421
>PRK08265 short chain dehydrogenase; Provisional
Probab=60.32 E-value=1e+02 Score=25.98 Aligned_cols=55 Identities=16% Similarity=0.077 Sum_probs=32.1
Q ss_pred CCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeec
Q 022213 106 SADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDL 160 (301)
Q Consensus 106 ~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~ 160 (301)
....+++|.+++..=..+.+.|.+.|..|++..-.-.......+..+.++..+..
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 59 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIAT 59 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEe
Confidence 3446677766665556777777788888877654333333344444545555544
No 422
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=59.10 E-value=48 Score=24.97 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=42.1
Q ss_pred ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEE--cCC---CCCcccCCCHHHHHHHHHHHHhCCC
Q 022213 153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVI--INP---GNPCGNVFTYHHLQEIAEMARKLRV 214 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l--~~p---~nptG~~~~~~~l~~i~~~~~~~~~ 214 (301)
++++.+|. . ..++++.+.+++.+....|++ |.| +...|.....++++.+-++..+.|+
T Consensus 29 vriIrvpC--~--Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi 91 (124)
T PF02662_consen 29 VRIIRVPC--S--GRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGI 91 (124)
T ss_pred eEEEEccC--C--CccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCC
Confidence 44555554 2 349999999999888887776 444 5688999888888888777776653
No 423
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=58.66 E-value=1e+02 Score=27.43 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=38.5
Q ss_pred CCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccc
Q 022213 165 NWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHL 225 (301)
Q Consensus 165 ~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~ 225 (301)
+..++.++++..++. +-..+++ +-+=|.| ++.+...+|++.|++.++.++.|..-..+
T Consensus 108 Gp~is~~~~~~~l~~~~~~l~~~d~Vvl-sGSlP~g--~~~d~y~~li~~~~~~g~~vilD~Sg~~L 171 (310)
T COG1105 108 GPEISEAELEQFLEQLKALLESDDIVVL-SGSLPPG--VPPDAYAELIRILRQQGAKVILDTSGEAL 171 (310)
T ss_pred CCCCCHHHHHHHHHHHHHhcccCCEEEE-eCCCCCC--CCHHHHHHHHHHHHhcCCeEEEECChHHH
Confidence 344666666654432 2233443 3333444 45668899999999999999999987766
No 424
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=58.32 E-value=71 Score=27.84 Aligned_cols=142 Identities=18% Similarity=0.251 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCCCC------CCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213 62 VEAEDAIVDAVRSGKFNC------YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL 135 (301)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~------Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl 135 (301)
....+.+++.+++..+.. |....|..+....+++.+.. ..-+++++.|...+.. +...+.+. --|+
T Consensus 14 ~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~------~~~DlIi~~gt~aa~~-~~~~~~~~-iPVV 85 (294)
T PF04392_consen 14 DDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKA------QKPDLIIAIGTPAAQA-LAKHLKDD-IPVV 85 (294)
T ss_dssp HHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCC------TS-SEEEEESHHHHHH-HHHH-SS--S-EE
T ss_pred HHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhc------CCCCEEEEeCcHHHHH-HHHhcCCC-cEEE
Confidence 455666677766533222 34456777666666666632 3457999998766654 44444321 2344
Q ss_pred ---EcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 022213 136 ---LPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL 212 (301)
Q Consensus 136 ---~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~ 212 (301)
+.+|...++..-....|..+.-+-. .....-.++.+.+.+..-.++.++.+++.+.+ ....+.+.+.++++
T Consensus 86 f~~V~dp~~~~l~~~~~~~~~nvTGv~~--~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~----~~~~~~~~~~a~~~ 159 (294)
T PF04392_consen 86 FCGVSDPVGAGLVDSLDRPGKNVTGVSE--RPPIEKQLELIKKLFPDAKRIGVLYDPSEPNS----VAQIEQLRKAAKKL 159 (294)
T ss_dssp EECES-TTTTTS-S-SSS--SSEEEEEE-----HHHHHHHHHHHSTT--EEEEEEETT-HHH----HHHHHHHHHHHHHT
T ss_pred EEeccChhhhhccccccCCCCCEEEEEC--CcCHHHHHHHHHHhCCCCCEEEEEecCCCccH----HHHHHHHHHHHHHc
Confidence 3345444332222222222322211 00011122223333332234445666765532 33467777777788
Q ss_pred CCeEE
Q 022213 213 RVMVV 217 (301)
Q Consensus 213 ~~~ii 217 (301)
|+-++
T Consensus 160 g~~l~ 164 (294)
T PF04392_consen 160 GIELV 164 (294)
T ss_dssp T-EEE
T ss_pred CCEEE
Confidence 87654
No 425
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=58.09 E-value=1.3e+02 Score=26.51 Aligned_cols=105 Identities=21% Similarity=0.231 Sum_probs=63.2
Q ss_pred CCCCEEEcCCHHHHHHHHHHHhcCCCC--EEEEc--CCCCcchH--HHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc
Q 022213 106 SADDVYVTLGCKQAVEVILSVLARPGA--NVLLP--RPGWPYYE--GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK 179 (301)
Q Consensus 106 ~~~~i~~t~g~~~al~~~~~~l~~~gd--~Vl~~--~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (301)
...+|++|.|.+.-....+....++|. +|++. .|.+.++. .-+...|++...++ | .++-...+.
T Consensus 161 hsnEviLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~---------d-aaVfA~Msr 230 (353)
T KOG1465|consen 161 HSNEVILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIP---------D-AAVFAMMSR 230 (353)
T ss_pred ccCceEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccchHhhHHHHHcCCeeEEec---------c-HHHHHHhhh
Confidence 456899999998888877777766654 34444 34444321 12234677765542 3 334444443
Q ss_pred CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213 180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220 (301)
Q Consensus 180 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~ 220 (301)
=.|+++-++.--+-|.+........++..|++|-.++++=.
T Consensus 231 VnKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlA 271 (353)
T KOG1465|consen 231 VNKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLA 271 (353)
T ss_pred cceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEec
Confidence 34444445554455556666667788888889988777543
No 426
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=57.86 E-value=94 Score=29.29 Aligned_cols=130 Identities=17% Similarity=0.166 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHhhhCC-----------CCCCCCCEEEcCCHHHHHHHHHHHhcCCC--CEEEE--cCCCCcch--HH
Q 022213 84 SGIPPARRAIADYLSRDLP-----------YKLSADDVYVTLGCKQAVEVILSVLARPG--ANVLL--PRPGWPYY--EG 146 (301)
Q Consensus 84 ~g~~~lr~~ia~~l~~~~~-----------~~~~~~~i~~t~g~~~al~~~~~~l~~~g--d~Vl~--~~p~~~~~--~~ 146 (301)
++-.+|+..|-+|+..... ..+...++++|-|.+..++.++.-..+.| =+|++ ..|.+.+- ..
T Consensus 325 eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr 404 (556)
T KOG1467|consen 325 EAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLR 404 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHH
Confidence 3455677777666655221 13456688888888888877766554333 23333 35666553 34
Q ss_pred HHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEc-cCCc
Q 022213 147 IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVAD-EVYG 223 (301)
Q Consensus 147 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D-~~y~ 223 (301)
.+...|+...++-+.. ++.+- .+-+++++=++.--.-|.++++..-..++-.++.+|+.+|+= |.|-
T Consensus 405 ~Lv~~GinctYv~I~a-------~syim---~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yK 472 (556)
T KOG1467|consen 405 RLVDRGINCTYVLINA-------ASYIM---LEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYK 472 (556)
T ss_pred HHHHcCCCeEEEEehh-------HHHHH---HhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhh
Confidence 5556788888776521 22222 112343333444345588999888888888899999987653 3443
No 427
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=57.63 E-value=1.2e+02 Score=25.60 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=60.7
Q ss_pred EEEcCCHHHHHHHHHHHhcCCCCEEEEc--CCC------Cc-----chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhh
Q 022213 110 VYVTLGCKQAVEVILSVLARPGANVLLP--RPG------WP-----YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEAL 176 (301)
Q Consensus 110 i~~t~g~~~al~~~~~~l~~~gd~Vl~~--~p~------~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 176 (301)
++..+|+-.+..++.+++.+ .+.+.+. .|. |+ -....++..|+....+..... ..-..+++.+.
T Consensus 4 ~vl~SGGKDS~lAl~~~~~~-~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~--~e~~~~~l~~~ 80 (222)
T TIGR00289 4 AVLYSGGKDSILALYKALEE-HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE--EEKEVEDLAGQ 80 (222)
T ss_pred EEEecCcHHHHHHHHHHHHc-CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCc--hhHHHHHHHHH
Confidence 45678888888888877765 5543321 121 11 124566778888776664321 11223444444
Q ss_pred ccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 177 ADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 177 ~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
+++ ...+++ +|.+.+..++..+-++|.+.|+..+
T Consensus 81 l~~~gv~~vv-------~GdI~s~~qr~~~e~vc~~~gl~~~ 115 (222)
T TIGR00289 81 LGELDVEALC-------IGAIESNYQKSRIDKVCRELGLKSI 115 (222)
T ss_pred HHHcCCCEEE-------ECccccHHHHHHHHHHHHHcCCEEe
Confidence 433 444554 8999999899999999999987644
No 428
>smart00642 Aamy Alpha-amylase domain.
Probab=57.11 E-value=14 Score=29.39 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEccCCcccc
Q 022213 198 TYHHLQEIAEMARKLRVMVVADEVYGHLT 226 (301)
Q Consensus 198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~ 226 (301)
+.++++++++.|+++|+-||.|-+.....
T Consensus 68 t~~d~~~lv~~~h~~Gi~vilD~V~NH~~ 96 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVILDVVINHTS 96 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 35889999999999999999999987643
No 429
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=56.65 E-value=57 Score=27.81 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=56.3
Q ss_pred CEEEcCCHHHHH-HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcC-ceEEEeecCCCCCCCCCHHHHHhhcc----cCc-
Q 022213 109 DVYVTLGCKQAV-EVILSVLARPGANVLLPRPGWPYYEGIAQRKQ-VEVRHFDLLPERNWEVDLDAVEALAD----KNT- 181 (301)
Q Consensus 109 ~i~~t~g~~~al-~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~- 181 (301)
.|++.+|++.+| +.+.+.|.+.|-+|++..---.....+....+ .+...+.++- -|.+.++.++. +..
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DV-----tD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDV-----TDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeecc-----CCHHHHHHHHHHHHHhhCc
Confidence 566666777766 77778888999999988777776777777777 2333333322 34555544443 212
Q ss_pred cEEEEcCCCCCcccC---CCHHHHHHHHHH
Q 022213 182 AAMVIINPGNPCGNV---FTYHHLQEIAEM 208 (301)
Q Consensus 182 ~~v~l~~p~nptG~~---~~~~~l~~i~~~ 208 (301)
.=++++|..--.|.. .+.++|+..++.
T Consensus 82 iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~ 111 (246)
T COG4221 82 IDILVNNAGLALGDPLDEADLDDWDRMIDT 111 (246)
T ss_pred ccEEEecCCCCcCChhhhCCHHHHHHHHHH
Confidence 224566654333333 345666666553
No 430
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=56.43 E-value=1.3e+02 Score=25.92 Aligned_cols=157 Identities=10% Similarity=0.134 Sum_probs=87.7
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH-
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ- 118 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~- 118 (301)
++-++|.+++.-.+ | ...=+.++++..++++++. ....+.+.+.+.-.+ ..+. .+++.+=...
T Consensus 36 ~GaD~iEiGiPfSD--P-~ADGpvIq~A~~rAL~~G~--------~~~~~~~~~~~ir~~----~~~~-pivlm~Y~N~i 99 (259)
T PF00290_consen 36 AGADIIEIGIPFSD--P-VADGPVIQKASQRALKNGF--------TLEKIFELVKEIRKK----EPDI-PIVLMTYYNPI 99 (259)
T ss_dssp TTBSSEEEE--SSS--C-TTSSHHHHHHHHHHHHTT----------HHHHHHHHHHHHHH----CTSS-EEEEEE-HHHH
T ss_pred cCCCEEEECCCCCC--C-CCCCHHHHHHHHHHHHCCC--------CHHHHHHHHHHHhcc----CCCC-CEEEEeeccHH
Confidence 47788988887222 2 1222577888888887432 123444444444322 1122 3444333333
Q ss_pred ---HHHHHHHHhcCCC-CEEEEcCCCCc---chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCC
Q 022213 119 ---AVEVILSVLARPG-ANVLLPRPGWP---YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGN 191 (301)
Q Consensus 119 ---al~~~~~~l~~~g-d~Vl~~~p~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~n 191 (301)
+++..+..+.+.| |.+++|+--+. .+...++.+|+..+++=.. . .+.+.++...+....-+++..-.-
T Consensus 100 ~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p--~---t~~~Ri~~i~~~a~gFiY~vs~~G 174 (259)
T PF00290_consen 100 FQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAP--T---TPEERIKKIAKQASGFIYLVSRMG 174 (259)
T ss_dssp HHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEET--T---S-HHHHHHHHHH-SSEEEEESSSS
T ss_pred hccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECC--C---CCHHHHHHHHHhCCcEEEeeccCC
Confidence 3444444444556 89999987665 4556677889887766431 1 356777776654455566666677
Q ss_pred CcccCCC-HHHHHHHHHHHHhCC-CeEE
Q 022213 192 PCGNVFT-YHHLQEIAEMARKLR-VMVV 217 (301)
Q Consensus 192 ptG~~~~-~~~l~~i~~~~~~~~-~~ii 217 (301)
.||...+ ..++++.++.++++. ..++
T Consensus 175 vTG~~~~~~~~l~~~i~~ik~~~~~Pv~ 202 (259)
T PF00290_consen 175 VTGSRTELPDELKEFIKRIKKHTDLPVA 202 (259)
T ss_dssp SSSTTSSCHHHHHHHHHHHHHTTSS-EE
T ss_pred CCCCcccchHHHHHHHHHHHhhcCcceE
Confidence 7888654 467888888888774 4443
No 431
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=55.78 E-value=1.2e+02 Score=25.43 Aligned_cols=98 Identities=13% Similarity=0.213 Sum_probs=62.1
Q ss_pred EEEcCCHHHHHHHHHHHhcCCCCEEEE----cCC--CC--c-----chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhh
Q 022213 110 VYVTLGCKQAVEVILSVLARPGANVLL----PRP--GW--P-----YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEAL 176 (301)
Q Consensus 110 i~~t~g~~~al~~~~~~l~~~gd~Vl~----~~p--~~--~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 176 (301)
++.-+|+-.+..++.+++.+ -+.+.+ +.. .| + -....++..|+..+.++..... .--.+.+.+.
T Consensus 4 ~~l~SGGKDS~~al~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~--e~~~e~l~~~ 80 (223)
T TIGR00290 4 AALISGGKDSCLALYHALKE-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTE--EDEVEELKGI 80 (223)
T ss_pred EEEecCcHHHHHHHHHHHHh-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCc--cHHHHHHHHH
Confidence 56778999999999888876 554332 111 11 1 1234556788887765543221 1234555555
Q ss_pred ccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 177 ADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 177 ~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
+++ ...+++ +|.+.+..++..+-++|.+.|+..+
T Consensus 81 l~~~gv~~vv-------~GdI~s~~qr~~~e~v~~~lgl~~~ 115 (223)
T TIGR00290 81 LHTLDVEAVV-------FGAIYSEYQKTRIERVCRELGLKSF 115 (223)
T ss_pred HHHcCCCEEE-------ECCcccHHHHHHHHHHHHhcCCEEe
Confidence 543 444454 7889998889999999999887644
No 432
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.97 E-value=57 Score=29.19 Aligned_cols=109 Identities=20% Similarity=0.233 Sum_probs=68.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcC-CCCc-----chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEE
Q 022213 113 TLGCKQAVEVILSVLARPGANVLLPR-PGWP-----YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVI 186 (301)
Q Consensus 113 t~g~~~al~~~~~~l~~~gd~Vl~~~-p~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l 186 (301)
+.|=|..+--+.+-+.+.|-+|++.. -+|- ....+.++.|++++.-.. -.+.-.+-.+.++.+...+...+++
T Consensus 149 G~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~-G~DpAaVafDAi~~Akar~~Dvvli 227 (340)
T COG0552 149 GVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKE-GADPAAVAFDAIQAAKARGIDVVLI 227 (340)
T ss_pred CCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCC-CCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 34557778888888888888877653 3443 234455677777764321 1111123345666666667788887
Q ss_pred cCC---CCCcccCCCHHHHHHHHHHHHhCC------CeEEEccCCccc
Q 022213 187 INP---GNPCGNVFTYHHLQEIAEMARKLR------VMVVADEVYGHL 225 (301)
Q Consensus 187 ~~p---~nptG~~~~~~~l~~i~~~~~~~~------~~ii~D~~y~~~ 225 (301)
.+. ||-+... +++++|.+++++.. ++++.|..-+.-
T Consensus 228 DTAGRLhnk~nLM---~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 228 DTAGRLHNKKNLM---DELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred eCcccccCchhHH---HHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 665 5555433 57999999998765 566768877654
No 433
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=53.17 E-value=86 Score=29.41 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=37.2
Q ss_pred CHHHHHhhcccCccEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213 169 DLDAVEALADKNTAAMVIINPGN-PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF 227 (301)
Q Consensus 169 ~~~~l~~~~~~~~~~v~l~~p~n-ptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~ 227 (301)
-.+.++++.....+.+++..-.. .+|.- ..+.-+++.++|+++|+.++=-++...+..
T Consensus 77 ~~~~l~e~~~~gv~~~vi~s~gf~e~g~~-g~~~~~~l~~~a~~~girvlGPnc~G~~~~ 135 (447)
T TIGR02717 77 VPQVVEECGEKGVKGAVVITAGFKEVGEE-GAELEQELVEIARKYGMRLLGPNCLGIINT 135 (447)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccccCcc-hHHHHHHHHHHHHHcCCEEEecCeeeEecC
Confidence 45667777767777765543322 23321 112237888999999999998888776554
No 434
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=52.96 E-value=1.9e+02 Score=26.66 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=77.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH-HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCc--eE
Q 022213 79 CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC-KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQV--EV 155 (301)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~-~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~--~~ 155 (301)
+|--....++++++..+-+.+ +|.+....+.+.++.. ...++.-+..+... +..++...+|..-..++....- .+
T Consensus 48 dYLGLa~~~~~~~a~~~~~~~-~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~-e~al~f~SGy~AN~~~i~~l~~~~dl 125 (388)
T COG0156 48 DYLGLASHPELIEAAKAAIRR-YGVGAGGSRLISGTSDLHVELEEELADFLGA-EAALLFSSGFVANLGLLSALLKKGDL 125 (388)
T ss_pred CcccccCCHHHHHHHHHHHHH-hCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-CcEEEEcccchhHHHHHHHhcCCCcE
Confidence 566666678999999998877 5666666665554444 45588888777654 3566667788755444443322 23
Q ss_pred EEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC---CCeEEEccCCcc
Q 022213 156 RHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL---RVMVVADEVYGH 224 (301)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~---~~~ii~D~~y~~ 224 (301)
+..+-. ....-++..--.+.+.+.+.| .+.+.++++++-+++. ..+|++|.+|+.
T Consensus 126 i~~D~l------nHASiidG~rls~a~~~~f~H--------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSM 183 (388)
T COG0156 126 IFSDEL------NHASIIDGIRLSRAEVRRFKH--------NDLDHLEALLEEARENGARRKLIVTEGVFSM 183 (388)
T ss_pred EEEech------hhhhHHHHHHhCCCcEEEecC--------CCHHHHHHHHHhhhccCCCceEEEEeccccC
Confidence 333211 122222222222444444444 3456788887766544 489999999996
No 435
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=52.08 E-value=1.2e+02 Score=28.06 Aligned_cols=96 Identities=15% Similarity=0.143 Sum_probs=50.6
Q ss_pred CCEEEcCCHHHHHHHHHHHhc---------CCCCEEEEcCCCCcchH-----H----HHHhcCceEEEeecCCCCCCCCC
Q 022213 108 DDVYVTLGCKQAVEVILSVLA---------RPGANVLLPRPGWPYYE-----G----IAQRKQVEVRHFDLLPERNWEVD 169 (301)
Q Consensus 108 ~~i~~t~g~~~al~~~~~~l~---------~~gd~Vl~~~p~~~~~~-----~----~~~~~g~~~~~~~~~~~~~~~~~ 169 (301)
+-|++++|++......+.-+. ++||.|++..+..+++. . .+...|+++.. .+.. .+ ..+
T Consensus 287 ~~vii~tg~~g~~~~~l~~~~~~~~~~i~l~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~h~-Sg-Ha~ 363 (422)
T TIGR00649 287 NYLIITTGSQGEPYAALTRIANNEHEQIRIRKGDTVVFSAPPIPGNENIAVSILLDIRLNEVGARVIK-RIHV-SG-HAS 363 (422)
T ss_pred cEEEEEeCCCCcHHHHHHHHhCCCCCcEEeCCCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCEEEe-ceEe-cC-CCC
Confidence 346666666544433343332 26799998887777654 1 23345666543 1111 11 245
Q ss_pred HHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 022213 170 LDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214 (301)
Q Consensus 170 ~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~ 214 (301)
-++|...++. +++.++..+--. ..+...++++++.|+
T Consensus 364 ~~dl~~~i~~~~Pk~~ipvHge~--------~~~~~~~~~a~~~g~ 401 (422)
T TIGR00649 364 QEDHKLLLRLLKPKYIIPVHGEY--------RMLINHTKLAEEEGY 401 (422)
T ss_pred HHHHHHHHHHhCCCEEEecCCcH--------HHHHHHHHHHHHcCC
Confidence 5666665543 566655444322 236666666766553
No 436
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=51.17 E-value=2.1e+02 Score=27.92 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCEEE-EcCCCCcch------HHHHHhcCc-eE-EEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213 113 TLGCKQAVEVILSVLARPGANVL-LPRPGWPYY------EGIAQRKQV-EV-RHFDLLPERNWEVDLDAVEALADKNTAA 183 (301)
Q Consensus 113 t~g~~~al~~~~~~l~~~gd~Vl-~~~p~~~~~------~~~~~~~g~-~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (301)
-.+-..|.+.+..++.+. .+|+ +-+..-.+. ...++..|. .+ .++|..-.++++++.+.+++......+.
T Consensus 52 l~~m~~a~~ri~~ai~~~-e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~~~L 130 (575)
T PRK11070 52 LSGIEKAVELLYNALREG-TRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQL 130 (575)
T ss_pred hhCHHHHHHHHHHHHHCC-CEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcCCCE
Confidence 466777777777777543 4544 334444432 344566776 33 4455444678899999999887666776
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCC
Q 022213 184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY 222 (301)
Q Consensus 184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y 222 (301)
++.+... .. + .+ -++.|+++|+-+|+=+-+
T Consensus 131 iItvD~G----i~-~---~e-~i~~a~~~gidvIVtDHH 160 (575)
T PRK11070 131 IVTVDNG----IS-S---HA-GVAHAHALGIPVLVTDHH 160 (575)
T ss_pred EEEEcCC----cC-C---HH-HHHHHHHCCCCEEEECCC
Confidence 6665532 22 2 33 345578888855543333
No 437
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=50.46 E-value=1.2e+02 Score=28.20 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEcCCCCc--chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCC-
Q 022213 115 GCKQAVEVILSVLARPGANVLLPRPGWP--YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPG- 190 (301)
Q Consensus 115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~- 190 (301)
|=+..+-.+...+.+.+ +|++-+-.=. ....-++++|+....+.+..+ .+++.+.+.+++ +++.+++.+-+
T Consensus 105 GKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aE----t~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 105 GKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAE----TNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred CHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehh----cCHHHHHHHHHhcCCCEEEEeccce
Confidence 34455555555555555 6664432222 334445566654433433333 467777776654 67777775542
Q ss_pred --------CCcccCCCHHHHHHHHHHHHhCCCeE
Q 022213 191 --------NPCGNVFTYHHLQEIAEMARKLRVMV 216 (301)
Q Consensus 191 --------nptG~~~~~~~l~~i~~~~~~~~~~i 216 (301)
-|-++.+-++.-.++.++|+++|+.+
T Consensus 180 ~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~ 213 (456)
T COG1066 180 LYSEEITSAPGSVSQVREVAAELMRLAKTKNIAI 213 (456)
T ss_pred eecccccCCCCcHHHHHHHHHHHHHHHHHcCCeE
Confidence 23344555566688899999999754
No 438
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=49.50 E-value=1.3e+02 Score=25.05 Aligned_cols=124 Identities=17% Similarity=0.163 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCCCEE--EcCCHHHHHHHHHHHhcCCCCEEEEc-CCCCcchHHHHHhcCceEEEeecCC
Q 022213 86 IPPARRAIADYLSRDLPYKLSADDVY--VTLGCKQAVEVILSVLARPGANVLLP-RPGWPYYEGIAQRKQVEVRHFDLLP 162 (301)
Q Consensus 86 ~~~lr~~ia~~l~~~~~~~~~~~~i~--~t~g~~~al~~~~~~l~~~gd~Vl~~-~p~~~~~~~~~~~~g~~~~~~~~~~ 162 (301)
..++++.+...+.+. +..+.-.|-. -.+...+++..++..+.+.|-..+=. +-........++..|+.....++.-
T Consensus 73 ~~~i~~~l~~al~~v-p~a~GvnNhmGS~~T~~~~~m~~vl~~l~~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~rdvfL 151 (213)
T PF04748_consen 73 EEEIRKRLEAALARV-PGAVGVNNHMGSRFTSDREAMRWVLEVLKERGLFFVDSRTTPRSVAPQVAKELGVPAARRDVFL 151 (213)
T ss_dssp HHHHHHHHHHHHCCS-TT-SEEEEEE-CCHHC-HHHHHHHHHHHHHTT-EEEE-S--TT-SHHHHHHHCT--EEE-SEET
T ss_pred HHHHHHHHHHHHHHC-CCcEEEecCCCccccCCHHHHHHHHHHHHHcCCEEEeCCCCcccHHHHHHHHcCCCEEeeceec
Confidence 356777777777441 1000100110 12234567777887777776555522 2233445677888998866655533
Q ss_pred CCCCCCCHHHHHhhc-------ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 163 ERNWEVDLDAVEALA-------DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 163 ~~~~~~~~~~l~~~~-------~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
++. .+.+.+++.+ +++-.+|.+.||+.-| .+.+++++.-.++.|+-++
T Consensus 152 D~~--~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p~T-----l~~L~~~~~~l~~~gi~lV 206 (213)
T PF04748_consen 152 DND--QDEAAIRRQLDQAARIARKQGSAIAIGHPRPET-----LEALEEWLPELEAQGIELV 206 (213)
T ss_dssp TST---SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCH-----HHHHHHHHHHHHHCTEEE-
T ss_pred CCC--CCHHHHHHHHHHHHHhhhhcCcEEEEEcCCHHH-----HHHHHHHHhHHhhCCEEEE
Confidence 332 5666665544 3456788888887654 4456666665667676554
No 439
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=49.47 E-value=1.5e+02 Score=25.38 Aligned_cols=99 Identities=15% Similarity=0.235 Sum_probs=55.0
Q ss_pred CCCCEEEcCCHHHHHHHHHHHhcCC-------------------CCEEEEcCCCCcc--hHHHHHhcCceEEEeecCCCC
Q 022213 106 SADDVYVTLGCKQAVEVILSVLARP-------------------GANVLLPRPGWPY--YEGIAQRKQVEVRHFDLLPER 164 (301)
Q Consensus 106 ~~~~i~~t~g~~~al~~~~~~l~~~-------------------gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~ 164 (301)
...+|++|+|+.+.-...- .... .+.|+...+-|.. -..+++..++.+..-. +.
T Consensus 129 ~~~~iflttGsk~L~~f~~--~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~al~~~~~i~~lVtK---~S 203 (249)
T PF02571_consen 129 GGGRIFLTTGSKNLPPFVP--APLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRALFRQYGIDVLVTK---ES 203 (249)
T ss_pred CCCCEEEeCchhhHHHHhh--cccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHHHHHHcCCCEEEEc---CC
Confidence 4579999999877655432 1111 2233333333331 2455666777755432 22
Q ss_pred CCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 022213 165 NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR 210 (301)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~ 210 (301)
+..-..++++.+...+..++++.-|.-|.|... .+.+++++++++
T Consensus 204 G~~g~~eKi~AA~~lgi~vivI~RP~~~~~~~~-~~~~~e~l~~l~ 248 (249)
T PF02571_consen 204 GGSGFDEKIEAARELGIPVIVIKRPPEPYGDPV-VETIEELLDWLE 248 (249)
T ss_pred CchhhHHHHHHHHHcCCeEEEEeCCCCCCCCcc-cCCHHHHHHHHh
Confidence 322445677777666788888888876654443 123566665553
No 440
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=48.93 E-value=34 Score=28.70 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHHHhcCceEEEe-ecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213 145 EGIAQRKQVEVRHF-DLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 145 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
...++..|..+..+ +. ..+..--.+.++.+++.+..++++....... ...+++.|++.|+.+|.
T Consensus 21 ~~~a~~~g~~~~~~~~~--~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~--------~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 21 KAAAKELGYEVEIVFDA--QNDPEEQIEQIEQAISQGVDGIIVSPVDPDS--------LAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHTCEEEEEEES--TTTHHHHHHHHHHHHHTTESEEEEESSSTTT--------THHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCEEEEeCCC--CCCHHHHHHHHHHHHHhcCCEEEecCCCHHH--------HHHHHHHHhhcCceEEE
Confidence 45667788888775 33 2121223455666777788887755443322 45666668888997776
No 441
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=48.91 E-value=42 Score=27.98 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=37.6
Q ss_pred HHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc
Q 022213 170 LDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG 223 (301)
Q Consensus 170 ~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~ 223 (301)
++.++++++....++-+=.-+..+-.. .+..+++.++|++|++.+|+++-+.
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~--~~~a~~~~~lc~~~~v~liINd~~d 75 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEY--LALAEKLRALCQKYGVPLIINDRVD 75 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHH--HHHHHHHHHHHHHhCCeEEecCcHH
Confidence 788888888776666554444433222 5667899999999999888887654
No 442
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=48.58 E-value=1.3e+02 Score=26.11 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=51.3
Q ss_pred CCEEEcCCHHHHH-HHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC--
Q 022213 108 DDVYVTLGCKQAV-EVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN-- 180 (301)
Q Consensus 108 ~~i~~t~g~~~al-~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 180 (301)
..+++| |+|.+| ....+.|.+.|..+++..=.-.... .+-...++++..++.+-.+. -+.+.+...+..+
T Consensus 7 ~~~lIT-GASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~--~~~~~l~~~l~~~~~ 83 (265)
T COG0300 7 KTALIT-GASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDP--EALERLEDELKERGG 83 (265)
T ss_pred cEEEEE-CCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCCh--hHHHHHHHHHHhcCC
Confidence 345555 455555 5666677788877776654444332 33344566766676654332 3455555555443
Q ss_pred ccEEEEcCCCC-Ccc--cCCCHHHHHHHHH
Q 022213 181 TAAMVIINPGN-PCG--NVFTYHHLQEIAE 207 (301)
Q Consensus 181 ~~~v~l~~p~n-ptG--~~~~~~~l~~i~~ 207 (301)
..-++++|... -.| .-.+.++.+++++
T Consensus 84 ~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~ 113 (265)
T COG0300 84 PIDVLVNNAGFGTFGPFLELSLDEEEEMIQ 113 (265)
T ss_pred cccEEEECCCcCCccchhhCChHHHHHHHH
Confidence 33456666642 223 2344455555444
No 443
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=48.31 E-value=15 Score=31.75 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213 199 YHHLQEIAEMARKLRVMVVADEVYGHLTF 227 (301)
Q Consensus 199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~ 227 (301)
.++++++++.|+++|+-||.|-+.-....
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred hhhhhhhhhccccccceEEEeeecccccc
Confidence 68899999999999999999999976543
No 444
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=47.62 E-value=1.8e+02 Score=24.97 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=60.0
Q ss_pred CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcC--CCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213 108 DDVYVTLGCKQAVEVILSVLARPGANVLLPR--PGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA 183 (301)
Q Consensus 108 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~--p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (301)
+++++|-|.+..+..++... +++.+|++.+ |.+.+. ...+...|+++..++ | ..+...+ ++...
T Consensus 87 ~dvILT~s~S~~v~~~l~~~-~~~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~---------D-sa~~~~m-~~vd~ 154 (253)
T PRK06372 87 DSVIGTISSSQVLKAFISSS-EKIKSVYILESRPMLEGIDMAKLLVKSGIDVVLLT---------D-ASMCEAV-LNVDA 154 (253)
T ss_pred CCEEEEeCCcHHHHHHHHhc-CCCCEEEEecCCCchHHHHHHHHHHHCCCCEEEEe---------h-hHHHHHH-HhCCE
Confidence 46999999888887777543 3445666654 555543 223344677776553 1 1222222 23555
Q ss_pred EEEc-CCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213 184 MVII-NPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 184 v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
+++. .---..|.++++----.++-.|+++++.+++
T Consensus 155 VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V 190 (253)
T PRK06372 155 VIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYS 190 (253)
T ss_pred EEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEE
Confidence 5552 3334567777776677788889999998877
No 445
>PRK00077 eno enolase; Provisional
Probab=47.60 E-value=90 Score=29.06 Aligned_cols=94 Identities=9% Similarity=0.075 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCc----chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCC
Q 022213 117 KQAVEVILSVLARPGANVLLPRPGWP----YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNP 192 (301)
Q Consensus 117 ~~al~~~~~~l~~~gd~Vl~~~p~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np 192 (301)
.+++...... +++-+.+.+++|... ++..+.+..+-+ +++..+..+..+++.++..++.+..-++..-++.-
T Consensus 264 ~e~~~~~~~l-~e~y~i~~iEdPl~~~D~~g~~~L~~~~~~~---ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~ 339 (425)
T PRK00077 264 EEMIDYLAEL-VDKYPIVSIEDGLDENDWEGWKLLTEKLGDK---VQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQI 339 (425)
T ss_pred HHHHHHHHHH-HhhCCcEEEEcCCCCccHHHHHHHHHhcCCC---CeEEcCCCccCCHHHHHHHHHhCCCCEEEeCcccc
Confidence 3444443333 344457789999865 344444444311 12212222234688898888765544555666654
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213 193 CGNVFTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 193 tG~~~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
.|.+ +..+++++|+.+|+.+++
T Consensus 340 GGit----ea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 340 GTLT----ETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CCHH----HHHHHHHHHHHcCCeEEE
Confidence 4443 489999999999986553
No 446
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=47.51 E-value=66 Score=28.73 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=45.5
Q ss_pred CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCc---------ccC--
Q 022213 129 RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPC---------GNV-- 196 (301)
Q Consensus 129 ~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~npt---------G~~-- 196 (301)
+.|..+++.+.........++..|.....+-+.......-.++.++..+++ ..+.+++.+..+-. |..
T Consensus 81 ~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~ 160 (321)
T TIGR02012 81 KAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHV 160 (321)
T ss_pred HcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccch
Confidence 456666655555544445556666543222221111111112333333433 46667776554311 111
Q ss_pred --CCH---HHHHHHHHHHHhCCCeEE-EccCCc
Q 022213 197 --FTY---HHLQEIAEMARKLRVMVV-ADEVYG 223 (301)
Q Consensus 197 --~~~---~~l~~i~~~~~~~~~~ii-~D~~y~ 223 (301)
..+ ..+.+|..+++++|+.+| ...++.
T Consensus 161 ~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~ 193 (321)
T TIGR02012 161 GLQARLMSQALRKLTGALSKSNTTAIFINQIRE 193 (321)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCEEEEEeccee
Confidence 111 346778888999998654 444444
No 447
>PLN03244 alpha-amylase; Provisional
Probab=47.50 E-value=30 Score=34.77 Aligned_cols=40 Identities=18% Similarity=0.077 Sum_probs=32.5
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc
Q 022213 187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT 226 (301)
Q Consensus 187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~ 226 (301)
++.--|+...-++++++++++.|+++|+-||.|-+|..+.
T Consensus 428 t~fFApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~ 467 (872)
T PLN03244 428 TNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAA 467 (872)
T ss_pred CcccccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCC
Confidence 3444455556678999999999999999999999997654
No 448
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.48 E-value=42 Score=31.45 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=22.9
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 192 PCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 192 ptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
+.+..++.+++++|++.|+++++-||
T Consensus 89 ~~~g~YT~~di~eiv~yA~~rgI~VI 114 (445)
T cd06569 89 SGSGYYSRADYIEILKYAKARHIEVI 114 (445)
T ss_pred ccCCccCHHHHHHHHHHHHHcCCEEE
Confidence 44668999999999999999998876
No 449
>PLN02955 8-amino-7-oxononanoate synthase
Probab=47.30 E-value=2.6e+02 Score=26.59 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=75.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH-HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhc------
Q 022213 79 CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC-KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRK------ 151 (301)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~-~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~------ 151 (301)
.|-.....++++++..+-+.+ +|.+......+.++.. .+-++..+..+.... ..++...+|.....++...
T Consensus 111 dYLGL~~~p~v~~a~~~ai~~-yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e-~all~sSGy~AN~~~i~aL~~~~~~ 188 (476)
T PLN02955 111 DYLGLSSHPTISNAAANAAKE-YGMGPKGSALICGYTTYHRLLESSLADLKKKE-DCLVCPTGFAANMAAMVAIGSVASL 188 (476)
T ss_pred CccCCCCCHHHHHHHHHHHHH-cCCCCCCcCccccChHHHHHHHHHHHHHHCCC-cEEEECChHHHHHHHHHHHhhcccc
Confidence 466666789999999999866 7776666666666544 344788887777544 4555556776443433322
Q ss_pred ---------Cce-EEEeecCCCCCCCCCHHHHHhhc--cc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213 152 ---------QVE-VRHFDLLPERNWEVDLDAVEALA--DK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 152 ---------g~~-~~~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
+.+ .+..+- . ... .+...+ .+ +..+-+...+|| +.+.++++++-+.+...+||+
T Consensus 189 ~~~~~~~~~~~~d~i~~D~----~--~Ha-SI~dG~~ls~~~~~a~~~~f~HN------D~~~Le~~L~~~~~~~~~Vv~ 255 (476)
T PLN02955 189 LAASGKPLKNEKVAIFSDA----L--NHA-SIIDGVRLAERQGNVEVFVYRHC------DMYHLNSLLSSCKMKRKVVVT 255 (476)
T ss_pred ccccccccCCCCcEEEEec----c--chH-HHHHHHHhccccCCceEEEeCCC------CHHHHHHHHHhCCCCceEEEE
Confidence 111 222221 0 122 222222 11 112223344555 346688877766666789999
Q ss_pred ccCCcc
Q 022213 219 DEVYGH 224 (301)
Q Consensus 219 D~~y~~ 224 (301)
|.+|+.
T Consensus 256 EgV~Sm 261 (476)
T PLN02955 256 DSLFSM 261 (476)
T ss_pred eCCCCC
Confidence 999886
No 450
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=47.03 E-value=1.2e+02 Score=22.49 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=36.3
Q ss_pred HHHh-cCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213 147 IAQR-KQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 147 ~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
.++. .|+++..+...+..+ + ..+.+.+......++++.|+ |-|......+-..|.+.|-++++.++.
T Consensus 39 ~L~~~~Gi~v~~vk~~~~~g---~-~~i~~~i~~g~i~~VInt~~-~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 39 LIQEATGLTVNRMKSGPLGG---D-QQIGALIAEGEIDAVIFFRD-PLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred HHHHhhCCcEEEEecCCCCc---h-hHHHHHHHcCceeEEEEcCC-CCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 3344 577766663322222 2 34555555554445555553 223322234467888888899988763
No 451
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=46.65 E-value=1.6e+02 Score=25.13 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=24.5
Q ss_pred CCHHHHHhhcc-----cC-ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 022213 168 VDLDAVEALAD-----KN-TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214 (301)
Q Consensus 168 ~~~~~l~~~~~-----~~-~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~ 214 (301)
.|.+.+..+++ .. ...++++.|..+ -..+....+++.|++.|+
T Consensus 49 ~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~----~~~~~~~~~i~aa~~~gv 97 (285)
T TIGR03649 49 LDEDTWDNPFSSDDGMEPEISAVYLVAPPIP----DLAPPMIKFIDFARSKGV 97 (285)
T ss_pred CCHHHHHHHHhcccCcCCceeEEEEeCCCCC----ChhHHHHHHHHHHHHcCC
Confidence 45666766653 22 455666655322 112446677787877775
No 452
>KOG2774 consensus NAD dependent epimerase [General function prediction only]
Probab=46.34 E-value=1.9e+02 Score=24.74 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=44.6
Q ss_pred hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc
Q 022213 144 YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG 223 (301)
Q Consensus 144 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~ 223 (301)
|..++...+++-+.+ +..-+|-+....|..++.+...- .....+.+.+-.|++++++|++-+.+-..-+
T Consensus 93 y~DILD~K~L~eIVV--n~RIdWL~HfSALLSAvGE~NVp---------LA~~VNI~GvHNil~vAa~~kL~iFVPSTIG 161 (366)
T KOG2774|consen 93 YLDILDQKSLEEIVV--NKRIDWLVHFSALLSAVGETNVP---------LALQVNIRGVHNILQVAAKHKLKVFVPSTIG 161 (366)
T ss_pred hhhhhccccHHHhhc--ccccceeeeHHHHHHHhcccCCc---------eeeeecchhhhHHHHHHHHcCeeEeeccccc
Confidence 345555555543333 33345777888888777653321 2222233346778899999999998887776
Q ss_pred ccccC
Q 022213 224 HLTFG 228 (301)
Q Consensus 224 ~~~~~ 228 (301)
.|.-+
T Consensus 162 AFGPt 166 (366)
T KOG2774|consen 162 AFGPT 166 (366)
T ss_pred ccCCC
Confidence 65433
No 453
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=46.23 E-value=1.1e+02 Score=26.53 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCC-------CCE----EEcCCHHHHHHHHHHHhc-CCCCE-EEEcCCCCcchHHHHHhcCc
Q 022213 87 PPARRAIADYLSRDLPYKLSA-------DDV----YVTLGCKQAVEVILSVLA-RPGAN-VLLPRPGWPYYEGIAQRKQV 153 (301)
Q Consensus 87 ~~lr~~ia~~l~~~~~~~~~~-------~~i----~~t~g~~~al~~~~~~l~-~~gd~-Vl~~~p~~~~~~~~~~~~g~ 153 (301)
..+...+.+|+..+++.+-.. .+. .-..+-.+.++.++..+. .|+|- |-+.+.+|++|..++.+.|+
T Consensus 171 e~Ll~~LgeFLeeHfPlp~~~~~~~Kkk~~~~e~~~~~~~l~eilE~LmN~l~~~p~DpYv~i~~~~WPpyie~LlR~GI 250 (268)
T PF11802_consen 171 EKLLSFLGEFLEEHFPLPDEQGNAKKKKKGEDEPSAQLITLREILEILMNKLLDSPHDPYVKIDDSFWPPYIELLLRSGI 250 (268)
T ss_pred HHHHHHHHHHHHhcCCCCcccchhhhhhccccccchhhhHHHHHHHHHHHHhcCCCCCCceecCcccChHHHHHHHHcCC
Confidence 456777778887766532110 011 112233456666776666 47875 55777779999999999998
Q ss_pred eEE
Q 022213 154 EVR 156 (301)
Q Consensus 154 ~~~ 156 (301)
-..
T Consensus 251 a~r 253 (268)
T PF11802_consen 251 ALR 253 (268)
T ss_pred eee
Confidence 654
No 454
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=46.13 E-value=62 Score=29.27 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=19.4
Q ss_pred CHHHHHhhcccCccEEEEcCC-CCCcccC--CCHHHHHHHHHHHHhCCC
Q 022213 169 DLDAVEALADKNTAAMVIINP-GNPCGNV--FTYHHLQEIAEMARKLRV 214 (301)
Q Consensus 169 ~~~~l~~~~~~~~~~v~l~~p-~nptG~~--~~~~~l~~i~~~~~~~~~ 214 (301)
+++.+..++.....+|++..+ -|-.+.. ++.+++++.+++|+++|.
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gk 63 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGK 63 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCC
Confidence 344444444444444444333 2222222 444445555555555443
No 455
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=45.86 E-value=1.3e+02 Score=28.68 Aligned_cols=70 Identities=10% Similarity=0.047 Sum_probs=45.0
Q ss_pred HHHhcC-ceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC--CCeEEEccCC
Q 022213 147 IAQRKQ-VEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVY 222 (301)
Q Consensus 147 ~~~~~g-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~y 222 (301)
.++..| .++..++...+ .++.+++.+.+.+ ++++|.++. .+.......++++.+++. ++.+|+=..+
T Consensus 31 ~L~~~G~~~V~iiD~~~~---~~~~~~~~~~l~~~~pdvVgis~------~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h 101 (497)
T TIGR02026 31 ALLDAGYHDVTFLDAMTG---PLTDEKLVERLRAHCPDLVLITA------ITPAIYIACETLKFARERLPNAIIVLGGIH 101 (497)
T ss_pred HHHhcCCcceEEeccccc---CCCHHHHHHHHHhcCcCEEEEec------CcccHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 355678 67887775432 3566777766643 677777643 223445677888888776 7888876666
Q ss_pred ccc
Q 022213 223 GHL 225 (301)
Q Consensus 223 ~~~ 225 (301)
..+
T Consensus 102 ~t~ 104 (497)
T TIGR02026 102 PTF 104 (497)
T ss_pred cCc
Confidence 543
No 456
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=45.79 E-value=41 Score=25.78 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=40.8
Q ss_pred CCCHHHHHhhccc-CccEEEEcCCCCCcccCCCH-HHHHHHHHHHHhC--CC-eEEEccCCcc
Q 022213 167 EVDLDAVEALADK-NTAAMVIINPGNPCGNVFTY-HHLQEIAEMARKL--RV-MVVADEVYGH 224 (301)
Q Consensus 167 ~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~-~~l~~i~~~~~~~--~~-~ii~D~~y~~ 224 (301)
..+.+.|.+.+++ ++..+++-.|-|..|..-.. +..++.++..++. ++ +..+||-|..
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~TT 99 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLTT 99 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCSH
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChhH
Confidence 5788999998876 56788889998877775443 4556666555443 66 4578998875
No 457
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=45.75 E-value=2e+02 Score=24.83 Aligned_cols=99 Identities=22% Similarity=0.203 Sum_probs=59.0
Q ss_pred EEEcCCHHHHHHHHHHHhcCCCCEEE---EcCCCCcc-----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCc
Q 022213 110 VYVTLGCKQAVEVILSVLARPGANVL---LPRPGWPY-----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT 181 (301)
Q Consensus 110 i~~t~g~~~al~~~~~~l~~~gd~Vl---~~~p~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (301)
++..+|+..+..++..+.-.-||.|+ +.+|..+. ....++..|++..+++++. ++ .++
T Consensus 21 ~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~-----~~-~~~-------- 86 (269)
T COG1606 21 VVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNR-----MD-PEF-------- 86 (269)
T ss_pred EEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhh-----cc-hhh--------
Confidence 45566766665555544434577765 34555543 3567778898888877632 22 111
Q ss_pred cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213 182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF 227 (301)
Q Consensus 182 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~ 227 (301)
.-||.|+. +.-...-...|.+.++++|.-++.|.+...=.+
T Consensus 87 ----~~n~~~rC-Y~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~ 127 (269)
T COG1606 87 ----KENPENRC-YLCKRAVYSTLVEEAEKRGYDVVADGTNASDLF 127 (269)
T ss_pred ----ccCCCCcc-hHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhc
Confidence 12233222 122344568888999999999999998775443
No 458
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=45.08 E-value=83 Score=28.42 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=41.5
Q ss_pred CCCCEEEEcCCCCc-chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcC-CCCCcccCCC
Q 022213 129 RPGANVLLPRPGWP-YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN-PGNPCGNVFT 198 (301)
Q Consensus 129 ~~gd~Vl~~~p~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~-p~nptG~~~~ 198 (301)
+++.+|++-+.+.- +....+...|+++..+|.+ .+.+++.+ -+++.|+++| |.+|.-...-
T Consensus 177 ~~~~~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~------t~~eeIl~---~~pDGiflSNGPGDP~~~~~~ 239 (368)
T COG0505 177 EPGKHVVVIDFGVKRNILRELVKRGCRVTVVPAD------TSAEEILA---LNPDGIFLSNGPGDPAPLDYA 239 (368)
T ss_pred CCCcEEEEEEcCccHHHHHHHHHCCCeEEEEcCC------CCHHHHHh---hCCCEEEEeCCCCChhHHHHH
Confidence 34567887777665 5566777789999988863 45555544 4788999875 7888544333
No 459
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=44.95 E-value=2.1e+02 Score=24.82 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCCCEEEEcC-CCCc-----chHHHHHhcCceEEEeecCCCCCCCCCHH-----HHHhhcccCccEEE
Q 022213 117 KQAVEVILSVLARPGANVLLPR-PGWP-----YYEGIAQRKQVEVRHFDLLPERNWEVDLD-----AVEALADKNTAAMV 185 (301)
Q Consensus 117 ~~al~~~~~~l~~~gd~Vl~~~-p~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~v~ 185 (301)
|..+..+...+.+.|.+|++-+ -.|- ....+.+..|+.+..... ..|+. .++.+...+...++
T Consensus 86 TTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~------~~dp~~~~~~~l~~~~~~~~D~Vi 159 (272)
T TIGR00064 86 TTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKE------GADPAAVAFDAIQKAKARNIDVVL 159 (272)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCC------CCCHHHHHHHHHHHHHHCCCCEEE
Confidence 3334444445556676766443 2232 123345566654432211 12332 23333334567788
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHH------hCCCeEEEccCCc
Q 022213 186 IINPGNPCGNVFTYHHLQEIAEMAR------KLRVMVVADEVYG 223 (301)
Q Consensus 186 l~~p~nptG~~~~~~~l~~i~~~~~------~~~~~ii~D~~y~ 223 (301)
+.+|....-...-.++++++.+.+. .++.+++.|....
T Consensus 160 IDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 160 IDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred EeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 8887433212223346777777776 5678888888643
No 460
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=44.90 E-value=2.2e+02 Score=25.02 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=35.7
Q ss_pred CHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc
Q 022213 169 DLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT 226 (301)
Q Consensus 169 ~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~ 226 (301)
-++.++++.....+.+++..... +...-++|.++|+++|+.++==++.+.+.
T Consensus 76 v~~~l~e~~~~Gvk~avIis~Gf------~e~~~~~l~~~a~~~girilGPNc~Giin 127 (286)
T TIGR01019 76 AADAIFEAIDAGIELIVCITEGI------PVHDMLKVKRYMEESGTRLIGPNCPGIIT 127 (286)
T ss_pred HHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHHcCCEEECCCCceEEc
Confidence 46677777777788766655442 22234789999999999998666665544
No 461
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=44.69 E-value=1.9e+02 Score=24.25 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=54.6
Q ss_pred EEEcCCHHHHHHHHHHHhcCCCCEEE----EcC-C---CCc-----chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhh
Q 022213 110 VYVTLGCKQAVEVILSVLARPGANVL----LPR-P---GWP-----YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEAL 176 (301)
Q Consensus 110 i~~t~g~~~al~~~~~~l~~~gd~Vl----~~~-p---~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 176 (301)
+++-+|+-.+..++.+++.+ .+.+. ++. . -|+ -....++..|+..+.++..... .--.+++.+.
T Consensus 4 v~l~SGGKDS~lAl~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~--~~~~~~l~~~ 80 (218)
T PF01902_consen 4 VALWSGGKDSCLALYRALRQ-HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDE--EDYVEDLKEA 80 (218)
T ss_dssp EEE--SSHHHHHHHHHHHHT--EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---C--CCHHHHHHHH
T ss_pred EEEEcCcHHHHHHHHHHHHh-CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCcc--chhhHHHHHH
Confidence 56778889998888888766 44322 111 1 111 1355667889998888774221 1234666666
Q ss_pred ccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 177 ADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 177 ~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
+++ +..+++ +|.+.+...+..+-++|.+.|+-.+
T Consensus 81 l~~~~v~~vv-------~GdI~~~~~r~~~e~vc~~lGl~~~ 115 (218)
T PF01902_consen 81 LKELKVEAVV-------FGDIDSEYQRNWVERVCERLGLEAV 115 (218)
T ss_dssp HCTC--SEEE---------TTS-HHHHHHHHHHHHHCT-EEE
T ss_pred HHHcCCCEEE-------ECcCCcHHHHHHHHHHHHHcCCEEE
Confidence 654 334444 7888888888888888999998655
No 462
>PLN00191 enolase
Probab=44.59 E-value=1e+02 Score=29.04 Aligned_cols=99 Identities=8% Similarity=0.050 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEcCCCCcc-hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc
Q 022213 115 GCKQAVEVILSVLARPGANVLLPRPGWPY-YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC 193 (301)
Q Consensus 115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt 193 (301)
++.+++...- .+.++-+.+.+++|.... +..+.+.... ..+++..++.+..+++.+++.+..+..-++..-++.-.
T Consensus 296 s~~e~i~~~~-~L~~~y~I~~IEDPl~~~D~eg~~~Lt~~--~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiG 372 (457)
T PLN00191 296 SGDELIDLYK-EFVSDYPIVSIEDPFDQDDWEHWAKLTSL--EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIG 372 (457)
T ss_pred CHHHHHHHHH-HHhhcCCcEEEECCCCcccHHHHHHHHcc--CCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccC
Confidence 5566665544 444444577899998653 2222221111 12233223333467888998887665545555665544
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213 194 GNVFTYHHLQEIAEMARKLRVMVVADE 220 (301)
Q Consensus 194 G~~~~~~~l~~i~~~~~~~~~~ii~D~ 220 (301)
|.+ +..+++++|+++|+.+++-.
T Consensus 373 GIT----ea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 373 TVT----ESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred CHH----HHHHHHHHHHHCCCEEEeCC
Confidence 433 47889999999999887544
No 463
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=43.52 E-value=72 Score=24.71 Aligned_cols=56 Identities=23% Similarity=0.205 Sum_probs=40.5
Q ss_pred CCHHHHHhhccc-CccEEEEcCCCCCcccCCCHH-HHHHHHHHHHhC-CC-eEEEccCCc
Q 022213 168 VDLDAVEALADK-NTAAMVIINPGNPCGNVFTYH-HLQEIAEMARKL-RV-MVVADEVYG 223 (301)
Q Consensus 168 ~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~-~l~~i~~~~~~~-~~-~ii~D~~y~ 223 (301)
.+.+.+.+.+++ ++..+++-.|.|..|...+.. ..+++++..+++ ++ +++.||-..
T Consensus 40 ~~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DERlt 99 (141)
T COG0816 40 QDFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDERLS 99 (141)
T ss_pred hhHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCccC
Confidence 488888888876 567889999999999888753 467777766543 44 446666654
No 464
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=43.38 E-value=2.3e+02 Score=25.01 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=57.8
Q ss_pred CCCCEEEcCCHH--------HHHHHHHHHhcCCC--CEEEEc--CCCCcc-h--HHHHHhcCceEEEeecCCCCCCCCCH
Q 022213 106 SADDVYVTLGCK--------QAVEVILSVLARPG--ANVLLP--RPGWPY-Y--EGIAQRKQVEVRHFDLLPERNWEVDL 170 (301)
Q Consensus 106 ~~~~i~~t~g~~--------~al~~~~~~l~~~g--d~Vl~~--~p~~~~-~--~~~~~~~g~~~~~~~~~~~~~~~~~~ 170 (301)
....+++|.|.+ .....+++...+.| -+|++. .|.+.+ . ...+...|+++..+. |
T Consensus 117 ~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~---------D- 186 (303)
T TIGR00524 117 KDGDTVLTHCNAGALATSDYGTALGVIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLIT---------D- 186 (303)
T ss_pred cCCCEEEEecCCccccccCcchHHHHHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEC---------h-
Confidence 345678877765 33333444443333 345554 566665 2 244455787776653 1
Q ss_pred HHHHhhccc-CccEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEc
Q 022213 171 DAVEALADK-NTAAMVI-INPGNPCGNVFTYHHLQEIAEMARKLRVMVVAD 219 (301)
Q Consensus 171 ~~l~~~~~~-~~~~v~l-~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D 219 (301)
..+...++. +...+++ ..---..|.+.++----.++-.|+.+++.+++=
T Consensus 187 sa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~ 237 (303)
T TIGR00524 187 SMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVA 237 (303)
T ss_pred hHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEe
Confidence 233333332 4555555 333345566666666667788888999877653
No 465
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=43.32 E-value=2.4e+02 Score=25.04 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=59.2
Q ss_pred CCCCCEEEcCCHHHHHHHHHHHhcCCC--CEEEEc--CCCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc
Q 022213 105 LSADDVYVTLGCKQAVEVILSVLARPG--ANVLLP--RPGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD 178 (301)
Q Consensus 105 ~~~~~i~~t~g~~~al~~~~~~l~~~g--d~Vl~~--~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (301)
+....+++|.|.+.....++....+.| -+|++. .|...+. ...+...|+++..++- ..+...++
T Consensus 118 i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~D----------sav~~~m~ 187 (310)
T PRK08535 118 IRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVD----------SAVRYFMK 187 (310)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEeh----------hHHHHHHH
Confidence 345567888876666655666554444 345544 3444442 2334457887776641 22222232
Q ss_pred cCccEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213 179 KNTAAMVI-INPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 179 ~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
+...+++ ..---..|.+.++----.++-.|+.+++.+++
T Consensus 188 -~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V 227 (310)
T PRK08535 188 -DVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMV 227 (310)
T ss_pred -hCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEE
Confidence 3555555 33344567777766667788888999987765
No 466
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=42.83 E-value=2.2e+02 Score=24.45 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=39.4
Q ss_pred CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhh---cccCccEEEEcCCCCCcccCCCHHHHHHHH
Q 022213 130 PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEAL---ADKNTAAMVIINPGNPCGNVFTYHHLQEIA 206 (301)
Q Consensus 130 ~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~v~l~~p~nptG~~~~~~~l~~i~ 206 (301)
++..+++..+.| ..+++.+|++...+. ..+..+....+.+. ++++...+++..++.+. +..+
T Consensus 169 ~~~~~v~~H~af---~Y~~~~ygl~~~~~~---~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~------~~~~--- 233 (266)
T cd01018 169 KQRAFMVYHPAW---GYFARDYGLTQIPIE---EEGKEPSPADLKRLIDLAKEKGVRVVFVQPQFST------KSAE--- 233 (266)
T ss_pred CCCeEEEECchh---HHHHHHcCCEEEecC---CCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCc------HHHH---
Confidence 455677766665 456788999976542 13334655555554 44433334445554333 1233
Q ss_pred HHHHhCCCeEE
Q 022213 207 EMARKLRVMVV 217 (301)
Q Consensus 207 ~~~~~~~~~ii 217 (301)
.++++.|+.++
T Consensus 234 ~la~~~g~~v~ 244 (266)
T cd01018 234 AIAREIGAKVV 244 (266)
T ss_pred HHHHHcCCeEE
Confidence 44556776554
No 467
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=42.74 E-value=84 Score=27.05 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=50.0
Q ss_pred CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC-ccEEEEc
Q 022213 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN-TAAMVII 187 (301)
Q Consensus 109 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~l~ 187 (301)
.|++..|++++-. +...|.+.|..|+...-+=.+- ..+...|...+... .++.+.+.+.+.++ .++| .
T Consensus 2 ~ILvlGGT~egr~-la~~L~~~g~~v~~s~~t~~~~-~~~~~~g~~~v~~g-------~l~~~~l~~~l~~~~i~~V--I 70 (256)
T TIGR00715 2 TVLLMGGTVDSRA-IAKGLIAQGIEILVTVTTSEGK-HLYPIHQALTVHTG-------ALDPQELREFLKRHSIDIL--V 70 (256)
T ss_pred eEEEEechHHHHH-HHHHHHhCCCeEEEEEccCCcc-ccccccCCceEEEC-------CCCHHHHHHHHHhcCCCEE--E
Confidence 5888888888654 4445556677666443322221 22233333322221 26777787777653 4443 2
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
+...|.-..++ +.+.+.|++.|+..|
T Consensus 71 DAtHPfA~~is----~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 71 DATHPFAAQIT----TNATAVCKELGIPYV 96 (256)
T ss_pred EcCCHHHHHHH----HHHHHHHHHhCCcEE
Confidence 33334433332 556677777776554
No 468
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=42.73 E-value=28 Score=31.58 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=23.2
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 192 PCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 192 ptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
+.|..++.+++++|++.|+++|+-||
T Consensus 78 ~~~~~YT~~di~eiv~yA~~rgI~VI 103 (357)
T cd06563 78 PYGGFYTQEEIREIVAYAAERGITVI 103 (357)
T ss_pred ccCceECHHHHHHHHHHHHHcCCEEE
Confidence 55778999999999999999998776
No 469
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=42.43 E-value=1.3e+02 Score=21.82 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=42.0
Q ss_pred HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc-ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC--CCeEEEccC
Q 022213 145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA-DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL--RVMVVADEV 221 (301)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~ 221 (301)
...++..|.++..++.. .+.+++.+.+ +.+++.+.++... ..+.+...++++..++. ++.+++=..
T Consensus 21 a~~l~~~G~~v~~~d~~------~~~~~l~~~~~~~~pd~V~iS~~~-----~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 21 AAYLRKAGHEVDILDAN------VPPEELVEALRAERPDVVGISVSM-----TPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHTTBEEEEEESS------B-HHHHHHHHHHTTCSEEEEEESS-----STHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHCCCeEEEECCC------CCHHHHHHHHhcCCCcEEEEEccC-----cCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 45667789998888653 3447776655 3477888775542 23345577888877766 566665444
Q ss_pred C
Q 022213 222 Y 222 (301)
Q Consensus 222 y 222 (301)
+
T Consensus 90 ~ 90 (121)
T PF02310_consen 90 H 90 (121)
T ss_dssp S
T ss_pred c
Confidence 4
No 470
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=42.28 E-value=60 Score=28.90 Aligned_cols=109 Identities=13% Similarity=0.008 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCC
Q 022213 88 PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWE 167 (301)
Q Consensus 88 ~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 167 (301)
.+.++|++.++++ .++-+++.++|.+.+...-..+..-=|.|..++-.|..+. +. .+....
T Consensus 191 ~~i~~Ia~~ar~~-----~P~~~II~NnG~eil~~~~g~~~~~idgV~~Eslf~~~~~-------------~~-~e~dr~ 251 (315)
T TIGR01370 191 AFVCEIAAYARAQ-----NPQFVIIPQNGEELLRDDHGGLAATVSGWAVEELFYYAAN-------------RP-TEAERQ 251 (315)
T ss_pred HHHHHHHHHHHHH-----CCCEEEEecCchhhhhccccchhhhceEEEecceEEcCCC-------------CC-CHHHHH
Confidence 3445555555442 4567888899988886310001111256666664433210 00 010001
Q ss_pred CCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCe
Q 022213 168 VDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVM 215 (301)
Q Consensus 168 ~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ 215 (301)
--++.|.++...+..++.+....+.+...-+++..+++.+.|+++|++
T Consensus 252 ~~l~~L~~~~~~G~~Vl~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf~ 299 (315)
T TIGR01370 252 RRLLALYRLWQQGKFVLTVDYVDDGTKTNENPARMKDAAEKARAAGLI 299 (315)
T ss_pred HHHHHHHHHHHCCCcEEEEEecCCcccchhhHHHHHHHHHHHHHcCCe
Confidence 112223333333344445544333233334567789999999999974
No 471
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=42.26 E-value=37 Score=32.76 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEccCCcccc
Q 022213 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLT 226 (301)
Q Consensus 196 ~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~ 226 (301)
.-+.++++++++.|+++|+-||.|-+|....
T Consensus 156 ~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~ 186 (542)
T TIGR02402 156 YGGPDDLKALVDAAHGLGLGVILDVVYNHFG 186 (542)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEccCCCC
Confidence 3347899999999999999999999998643
No 472
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.06 E-value=2.1e+02 Score=23.95 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=20.9
Q ss_pred CCCEEEcCCHHHHHHHHHHHhcCCCCEEEEc
Q 022213 107 ADDVYVTLGCKQAVEVILSVLARPGANVLLP 137 (301)
Q Consensus 107 ~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~ 137 (301)
...+++|.++...-..+.+.|.+.|..|++.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVL 37 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 3456677666555566777777888777654
No 473
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=41.97 E-value=1.1e+02 Score=22.10 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHhCCCeEEE
Q 022213 197 FTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 197 ~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
.+.++.+++.+.+++++..+.+
T Consensus 97 ~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 97 LTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp SSHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHHHHHHHHHHHHHhCCEEEE
Confidence 3567777777777777776654
No 474
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=41.24 E-value=1.1e+02 Score=26.31 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=49.2
Q ss_pred CEEEcCCHHHHHHHHHHHhcCCCCEEEEcC-CCCcchHHHHHh--cCceEEEeecCCCCCCCC-CHHHHHhhcccCccEE
Q 022213 109 DVYVTLGCKQAVEVILSVLARPGANVLLPR-PGWPYYEGIAQR--KQVEVRHFDLLPERNWEV-DLDAVEALADKNTAAM 184 (301)
Q Consensus 109 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~-p~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~v 184 (301)
+|++..|++++-.++- .|.+.|. |++.. ..|.. ..... .+..+. . + .+ +.+.+++.++++...+
T Consensus 2 ~ILvlgGTtE~r~la~-~L~~~g~-v~~sv~t~~g~--~~~~~~~~~~~v~---~---G--~lg~~~~l~~~l~~~~i~~ 69 (249)
T PF02571_consen 2 KILVLGGTTEGRKLAE-RLAEAGY-VIVSVATSYGG--ELLKPELPGLEVR---V---G--RLGDEEGLAEFLRENGIDA 69 (249)
T ss_pred EEEEEechHHHHHHHH-HHHhcCC-EEEEEEhhhhH--hhhccccCCceEE---E---C--CCCCHHHHHHHHHhCCCcE
Confidence 5788889999986554 4555666 54442 22221 11111 122221 1 1 25 8888888886544333
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
+ ...+.|.-..++ +.+.+.|++.|+.++
T Consensus 70 v-IDATHPfA~~is----~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 70 V-IDATHPFAAEIS----QNAIEACRELGIPYL 97 (249)
T ss_pred E-EECCCchHHHHH----HHHHHHHhhcCcceE
Confidence 3 334445433333 566677777776654
No 475
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=41.12 E-value=93 Score=25.82 Aligned_cols=100 Identities=21% Similarity=0.132 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHHHhcCCC-CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCC---CCCCHHHHHhhcccCccEEEEcC
Q 022213 113 TLGCKQAVEVILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERN---WEVDLDAVEALADKNTAAMVIIN 188 (301)
Q Consensus 113 t~g~~~al~~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~v~l~~ 188 (301)
+.|-|-++-...+.+.+.| |.|+-.--+|..-.-.....|++..+......++ ..+|++.+.. .++..+++..
T Consensus 15 GVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~E~DldaiL~---R~P~vvLVDE 91 (211)
T PF02702_consen 15 GVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLEEMDLDAILA---RRPQVVLVDE 91 (211)
T ss_dssp TSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEEE--HHHHHH---H--SEEEES-
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEecccCCHHHHHh---cCCCEEEeCc
Confidence 4566777777777777777 6666333334322223334565544322211122 2466665543 4678877753
Q ss_pred --CCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 189 --PGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 189 --p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
..|+.|... .++++.+-++.. .|+=++
T Consensus 92 LAHtN~pgsr~-~kR~qDVeeLL~-aGIdV~ 120 (211)
T PF02702_consen 92 LAHTNAPGSRH-KKRYQDVEELLD-AGIDVY 120 (211)
T ss_dssp TT-B--TT-SS-SBHHHHHHHHHH-TT-EEE
T ss_pred ccccCCCCCCC-cccHHhHHHHHH-CCCeEE
Confidence 368888754 467787777664 577554
No 476
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=41.11 E-value=44 Score=25.22 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=22.8
Q ss_pred HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213 172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
.+++.++.++.+++++.-..| -+.+.++|+++++.++.
T Consensus 73 ~l~~l~~~~~P~iIvt~~~~~---------p~~l~e~a~~~~ipll~ 110 (127)
T PF02603_consen 73 RLEKLFSYNPPCIIVTRGLEP---------PPELIELAEKYNIPLLR 110 (127)
T ss_dssp HHHHHCTTT-S-EEEETTT------------HHHHHHHHHCT--EEE
T ss_pred HHHHHhCCCCCEEEEECcCCC---------CHHHHHHHHHhCCcEEE
Confidence 455566667888888876644 37788889899987763
No 477
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=40.85 E-value=2.6e+02 Score=24.72 Aligned_cols=116 Identities=17% Similarity=0.162 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCC--EEEEc--CCCCcch--HHHHHhcCceEEEeecC
Q 022213 88 PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGA--NVLLP--RPGWPYY--EGIAQRKQVEVRHFDLL 161 (301)
Q Consensus 88 ~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd--~Vl~~--~p~~~~~--~~~~~~~g~~~~~~~~~ 161 (301)
..++.|+++-... +....+++|.|.+.....+++...+.|. +|++. .|.+.+. ...+...|+++..++-
T Consensus 100 ~a~~~I~~~a~~~----i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~D- 174 (301)
T TIGR00511 100 KAQERIGEIGAKR----IRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVD- 174 (301)
T ss_pred HHHHHHHHHHHHH----cCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEeh-
Confidence 3444444444332 3445678877766655555555544442 44444 3444442 2334456777776531
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVI-INPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
..+...++ +...+++ ..---..|.+.++----.++-.|+.+++.+++
T Consensus 175 ---------sa~~~~m~-~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V 222 (301)
T TIGR00511 175 ---------SAVRYFMK-EVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMV 222 (301)
T ss_pred ---------hHHHHHHH-hCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEE
Confidence 22222332 2444544 23334556666666667788888999987765
No 478
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=40.33 E-value=31 Score=32.59 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhCCCeEEEccCCcccc
Q 022213 198 TYHHLQEIAEMARKLRVMVVADEVYGHLT 226 (301)
Q Consensus 198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~ 226 (301)
+.++++++++.|+++|+.||.|-+.-...
T Consensus 79 t~~dl~~Li~~~H~~Gi~vi~D~V~NH~~ 107 (479)
T PRK09441 79 TKEELLNAIDALHENGIKVYADVVLNHKA 107 (479)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 56789999999999999999999988765
No 479
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=39.35 E-value=2.8e+02 Score=25.32 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCCCCEEE-----cCCHHHHHHHHHHHhcCCCCEEEEcCCCCc--chHHHHHhcCceEE
Q 022213 84 SGIPPARRAIADYLSRDLPYKLSADDVYV-----TLGCKQAVEVILSVLARPGANVLLPRPGWP--YYEGIAQRKQVEVR 156 (301)
Q Consensus 84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~-----t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~--~~~~~~~~~g~~~~ 156 (301)
.|+.+|-+.+-. ++.+..+++ ..|=|..+..++..+.+.|.+|++.+-.-. ....-++..|....
T Consensus 66 TGi~eLD~vLgG--------Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~ 137 (372)
T cd01121 66 TGIEELDRVLGG--------GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTE 137 (372)
T ss_pred cCCHHHHHhhcC--------CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcc
Confidence 467776654432 234444444 223344444444444445556654332211 12222334454322
Q ss_pred EeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCc-----ccCCC----HHHHHHHHHHHHhCCCeEE
Q 022213 157 HFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPC-----GNVFT----YHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~npt-----G~~~~----~~~l~~i~~~~~~~~~~ii 217 (301)
.+.+..+ .+++.+.+.+.. +++.+++.+-++-. +..-+ ++.+.++.++++++++.++
T Consensus 138 ~l~l~~e----~~le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvi 204 (372)
T cd01121 138 NLYLLAE----TNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIF 204 (372)
T ss_pred cEEEEcc----CcHHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 2222111 456777776644 67777776654321 11112 2334567888999997553
No 480
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.08 E-value=3.3e+02 Score=25.45 Aligned_cols=97 Identities=10% Similarity=0.008 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEc-CCCCc-ch----HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc---c--CccE
Q 022213 115 GCKQAVEVILSVLARPGANVLLP-RPGWP-YY----EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD---K--NTAA 183 (301)
Q Consensus 115 g~~~al~~~~~~l~~~gd~Vl~~-~p~~~-~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~--~~~~ 183 (301)
|=|..+..+...+.+.|-+|.+. .-.|- +. ....+..|+.+... .+.+.+.+.+. . +...
T Consensus 253 GKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~---------~d~~~L~~aL~~lk~~~~~Dv 323 (436)
T PRK11889 253 GKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---------RDEAAMTRALTYFKEEARVDY 323 (436)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEec---------CCHHHHHHHHHHHHhccCCCE
Confidence 33555555555566667665533 32332 22 22233445443321 24555655542 1 3577
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHH---HhCCCeEEEccCCc
Q 022213 184 MVIINPGNPCGNVFTYHHLQEIAEMA---RKLRVMVVADEVYG 223 (301)
Q Consensus 184 v~l~~p~nptG~~~~~~~l~~i~~~~---~~~~~~ii~D~~y~ 223 (301)
|++..+.... .+.+.++++.++. ..+.++++.|....
T Consensus 324 VLIDTaGRs~---kd~~lm~EL~~~lk~~~PdevlLVLsATtk 363 (436)
T PRK11889 324 ILIDTAGKNY---RASETVEEMIETMGQVEPDYICLTLSASMK 363 (436)
T ss_pred EEEeCccccC---cCHHHHHHHHHHHhhcCCCeEEEEECCccC
Confidence 8887773322 2333345554444 34567777887644
No 481
>PRK06483 dihydromonapterin reductase; Provisional
Probab=39.02 E-value=2.2e+02 Score=23.40 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=28.9
Q ss_pred CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeec
Q 022213 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDL 160 (301)
Q Consensus 109 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~ 160 (301)
.+++|.++...-..+.+.|.+.|.+|++..-.-......++..+......++
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~ 55 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADF 55 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCC
Confidence 4666666665556666677778888776543322222333444544444443
No 482
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=39.01 E-value=82 Score=27.90 Aligned_cols=80 Identities=21% Similarity=0.210 Sum_probs=48.7
Q ss_pred CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCc-eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEc
Q 022213 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQV-EVRHFDLLPERNWEVDLDAVEALADKNTAAMVII 187 (301)
Q Consensus 109 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~ 187 (301)
++++|++ .|...+-.+ ..+|+|++-.-.|.+ ..+.+..|. +++.++-...--..+..+++++.-...+.+.++.
T Consensus 141 Di~cTSs--NAvkvVe~~--~~~~~Iif~PD~~Lg-~yva~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~~~Pda~vlv 215 (324)
T COG0379 141 DICCTSS--NAVKVVESA--LDGDKILFLPDKNLG-RYVAKQTGAKKIILWPGHCIVHEEFTAEDIEELKEKYPDAEVLV 215 (324)
T ss_pred CeEEecc--hHHHHHHhc--cCCCcEEEcCcHHHH-HHHHHHcCCCcEEEECCccchhhhcCHHHHHHHHHHCCCCEEEE
Confidence 4555544 344333332 467888876656655 345667777 6666542111112367788888777789999999
Q ss_pred CCCCCc
Q 022213 188 NPGNPC 193 (301)
Q Consensus 188 ~p~npt 193 (301)
||-.|.
T Consensus 216 HPEC~~ 221 (324)
T COG0379 216 HPECPP 221 (324)
T ss_pred CCCCCH
Confidence 997654
No 483
>PRK09354 recA recombinase A; Provisional
Probab=38.82 E-value=1.3e+02 Score=27.18 Aligned_cols=95 Identities=12% Similarity=0.154 Sum_probs=46.6
Q ss_pred CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCc---------ccC-C
Q 022213 129 RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPC---------GNV-F 197 (301)
Q Consensus 129 ~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~npt---------G~~-~ 197 (301)
+.|..+++.+..+......++..|+.+..+-+.......-.++.++..+++ ..+.|++.+...-. |.. .
T Consensus 86 ~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~ 165 (349)
T PRK09354 86 KAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHV 165 (349)
T ss_pred HcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccch
Confidence 456666666555554455666677653322221111101112333334433 46667776654321 111 0
Q ss_pred -CH-----HHHHHHHHHHHhCCCeEEE-ccCCc
Q 022213 198 -TY-----HHLQEIAEMARKLRVMVVA-DEVYG 223 (301)
Q Consensus 198 -~~-----~~l~~i~~~~~~~~~~ii~-D~~y~ 223 (301)
.. ..+.+|..+++++++.+|. ..++.
T Consensus 166 ~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~ 198 (349)
T PRK09354 166 GLQARLMSQALRKLTGNISKSNTTVIFINQIRE 198 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeee
Confidence 01 2367788889999986644 44444
No 484
>PTZ00081 enolase; Provisional
Probab=38.63 E-value=1.4e+02 Score=28.03 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEcCCCCc----chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCC
Q 022213 115 GCKQAVEVILSVLARPGANVLLPRPGWP----YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPG 190 (301)
Q Consensus 115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~ 190 (301)
++.+.++...+.+-+ -+.+.+++|... +|..+.+..|-.+ ++.-++.+..+++.+.+.+..+..-++..-++
T Consensus 282 s~~eli~~~~~~l~~-y~I~~IEDPl~~~D~eg~~~Lt~~lg~~i---~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvn 357 (439)
T PTZ00081 282 TGEELVELYLDLVKK-YPIVSIEDPFDQDDWEAYAKLTAAIGQKV---QIVGDDLLVTNPTRIKKAIEKKACNALLLKVN 357 (439)
T ss_pred CHHHHHHHHHHHHhc-CCcEEEEcCCCcccHHHHHHHHHhhCCCc---eEEcCCcccCCHHHHHHHHHhCCCCEEEeccc
Confidence 556666666655543 346788999865 4555555553232 22222233456888988887665555666666
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEc
Q 022213 191 NPCGNVFTYHHLQEIAEMARKLRVMVVAD 219 (301)
Q Consensus 191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D 219 (301)
.-.|.+ +..+++++|+++++.+++=
T Consensus 358 qiGGIT----e~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 358 QIGTVT----EAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred cccCHH----HHHHHHHHHHHcCCcEEEe
Confidence 544333 5888999999999877753
No 485
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=38.46 E-value=3.7e+02 Score=25.92 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=40.0
Q ss_pred CCCEEEEcCCCCcch-HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCC
Q 022213 130 PGANVLLPRPGWPYY-EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFT 198 (301)
Q Consensus 130 ~gd~Vl~~~p~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~ 198 (301)
+||+|++--|.-+.. ...+....+..+..++. . .+..++++..+.. +.++++...-....|....
T Consensus 64 kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf--~--~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~ 130 (528)
T COG0365 64 KGDRVAIYMPNSPEAVIALLATARIGAIPAVVS--P--GLSAEAVADRIADLGPKVLIADDGTFRNGKEIA 130 (528)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecc--c--CCCHHHHHHHHHccCCCEEEEeccccccccccc
Confidence 789988877765532 22333333333444442 2 3668888877754 6777776666777777766
No 486
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.45 E-value=2.9e+02 Score=24.89 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=30.5
Q ss_pred CCHHHHHhhcccCccEEEEcCCCCCccc----CCCHHHHHHHHHHHHhCCCeEEE
Q 022213 168 VDLDAVEALADKNTAAMVIINPGNPCGN----VFTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 168 ~~~~~l~~~~~~~~~~v~l~~p~nptG~----~~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
-+.+++.+.++.....| =--|-||+|. ..+.++++++.++.+++|+-+.+
T Consensus 267 eda~~La~llk~l~~~V-nLiPyn~~~~~~~~~ps~e~l~~f~~~l~~~gi~v~i 320 (342)
T PRK14454 267 EDAKELGKLLKGMLCHV-NLIPVNEVKENGFKKSSKEKIKKFKNILKKNGIETTI 320 (342)
T ss_pred HHHHHHHHHHhcCCceE-EEEecCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 34555555555421111 1145566553 45788999999999999877655
No 487
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=38.09 E-value=1.6e+02 Score=25.43 Aligned_cols=118 Identities=22% Similarity=0.196 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCC--EEEEc--CCCCcc--hHHHHHhcCceEEEeecC
Q 022213 88 PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGA--NVLLP--RPGWPY--YEGIAQRKQVEVRHFDLL 161 (301)
Q Consensus 88 ~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd--~Vl~~--~p~~~~--~~~~~~~~g~~~~~~~~~ 161 (301)
..++.++++..+ .+....+++|.|-+..+..++....+.|. +|++. .|.+.+ ....+...|+++..++-
T Consensus 92 ~~~~~I~~~~~~----~I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d- 166 (282)
T PF01008_consen 92 QAREKIADHASE----LINDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPD- 166 (282)
T ss_dssp HHHHHHHHHHHC----CC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-G-
T ss_pred HHHHHHHHHHHH----hccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhhhcceeEEEEec-
Confidence 344444444433 35566788888888887777777655552 34444 444444 23344557888777642
Q ss_pred CCCCCCCCHHHHHhhcccCccEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEc
Q 022213 162 PERNWEVDLDAVEALADKNTAAMVI-INPGNPCGNVFTYHHLQEIAEMARKLRVMVVAD 219 (301)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D 219 (301)
..+...++.....+++ +.---+.|.+.++---..++-.|+++++.+++=
T Consensus 167 ---------~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~ 216 (282)
T PF01008_consen 167 ---------SAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVL 216 (282)
T ss_dssp ---------GGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE
T ss_pred ---------hHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEE
Confidence 2233333222444433 222234454444444556777788999877654
No 488
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.75 E-value=36 Score=30.33 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=23.2
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 192 PCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 192 ptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
+.+-.++.+++++|++.|+++|+-||
T Consensus 74 ~~~~~YT~~di~eiv~yA~~rgI~vI 99 (326)
T cd06564 74 ANDGYYTKEEFKELIAYAKDRGVNII 99 (326)
T ss_pred CCCCcccHHHHHHHHHHHHHcCCeEe
Confidence 45778999999999999999998776
No 489
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=37.65 E-value=1.5e+02 Score=22.82 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=38.7
Q ss_pred CCHHHHHhhccc-CccEEEEcCCCCCcccCCCH-HHHHHHHHHHHhC-CC-eEEEccCCcc
Q 022213 168 VDLDAVEALADK-NTAAMVIINPGNPCGNVFTY-HHLQEIAEMARKL-RV-MVVADEVYGH 224 (301)
Q Consensus 168 ~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~-~~l~~i~~~~~~~-~~-~ii~D~~y~~ 224 (301)
.+.+.|.+.+++ ++..+++-.|-|..|..-+. ..+++.++..++. ++ +..+||.|..
T Consensus 41 ~~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT 101 (138)
T PRK00109 41 PDWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLST 101 (138)
T ss_pred hHHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCH
Confidence 457788887765 56788889998888886442 3455555555432 44 5678888875
No 490
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.50 E-value=2.7e+02 Score=23.98 Aligned_cols=159 Identities=13% Similarity=0.145 Sum_probs=81.5
Q ss_pred CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH--H
Q 022213 40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC--K 117 (301)
Q Consensus 40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~--~ 117 (301)
.+-++|.+++.-.+ | ...=+.++++-.++++++. ....+-+.+.++-.+. .+..=+++|--. .
T Consensus 38 ~Gad~iElGiPfSD--P-~aDGpvIq~a~~~AL~~G~--------~~~~~~~~~~~~r~~~----~~~p~vlm~Y~N~i~ 102 (258)
T PRK13111 38 AGADIIELGIPFSD--P-VADGPVIQAASLRALAAGV--------TLADVFELVREIREKD----PTIPIVLMTYYNPIF 102 (258)
T ss_pred CCCCEEEECCCCCC--C-cccCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHhcC----CCCCEEEEecccHHh
Confidence 36788888776222 2 1222466777777776431 1223444444432121 111124444221 2
Q ss_pred -HHHHHHHHHhcCCC-CEEEEcCCCCc---chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCC
Q 022213 118 -QAVEVILSVLARPG-ANVLLPRPGWP---YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNP 192 (301)
Q Consensus 118 -~al~~~~~~l~~~g-d~Vl~~~p~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np 192 (301)
-+++..+..+.+-| |.+++++--+. .+...++.+|+..+.+-. +. ...+.++...+....-+++..-.-.
T Consensus 103 ~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lva-p~----t~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVA-PT----TTDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeC-CC----CCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 25566666666666 88999877665 345566778888776422 11 2345555544433333444333334
Q ss_pred cccCC-CHHHHHHHHHHHHhC-CCeEEE
Q 022213 193 CGNVF-TYHHLQEIAEMARKL-RVMVVA 218 (301)
Q Consensus 193 tG~~~-~~~~l~~i~~~~~~~-~~~ii~ 218 (301)
||..- ....+.+.++.++++ ++.+++
T Consensus 178 TG~~~~~~~~~~~~i~~vk~~~~~pv~v 205 (258)
T PRK13111 178 TGARSADAADLAELVARLKAHTDLPVAV 205 (258)
T ss_pred CCcccCCCccHHHHHHHHHhcCCCcEEE
Confidence 66632 224466666666664 555553
No 491
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=37.43 E-value=3e+02 Score=24.52 Aligned_cols=114 Identities=22% Similarity=0.194 Sum_probs=61.2
Q ss_pred CEEEcCCHHHHHHHHHHHhcC--CCCE-EEEcCCCCcchHHHHHhc-C-ceEEEeecCCCCCCCCCHHHHHhhccc-Ccc
Q 022213 109 DVYVTLGCKQAVEVILSVLAR--PGAN-VLLPRPGWPYYEGIAQRK-Q-VEVRHFDLLPERNWEVDLDAVEALADK-NTA 182 (301)
Q Consensus 109 ~i~~t~g~~~al~~~~~~l~~--~gd~-Vl~~~p~~~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 182 (301)
.+++|.|+-=.-...++.+++ +.++ +.+...+|.+....+... + -+..++..+ .-|.+.+.+.+++ ++.
T Consensus 2 ~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~D-----I~D~~~v~~~~~~~~~D 76 (340)
T COG1088 2 KILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGD-----ICDRELVDRLFKEYQPD 76 (340)
T ss_pred cEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEecc-----ccCHHHHHHHHHhcCCC
Confidence 477888875444555555554 3343 557788998765444332 2 234443321 2456777777765 344
Q ss_pred EEEE----cCCC----CCc----ccCCCHHHHHHHHHHHHhCCC-----eEEEccCCcccccCCC
Q 022213 183 AMVI----INPG----NPC----GNVFTYHHLQEIAEMARKLRV-----MVVADEVYGHLTFGSI 230 (301)
Q Consensus 183 ~v~l----~~p~----npt----G~~~~~~~l~~i~~~~~~~~~-----~ii~D~~y~~~~~~~~ 230 (301)
+|+= +|.. .|. ..++. --.|++.++++.. .|=.||+|+++..++.
T Consensus 77 ~VvhfAAESHVDRSI~~P~~Fi~TNv~G---T~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~ 138 (340)
T COG1088 77 AVVHFAAESHVDRSIDGPAPFIQTNVVG---TYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDD 138 (340)
T ss_pred eEEEechhccccccccChhhhhhcchHH---HHHHHHHHHHhcccceEEEeccccccccccCCCC
Confidence 3321 1111 111 11111 2456777778762 4567999999887643
No 492
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=37.37 E-value=1e+02 Score=28.44 Aligned_cols=106 Identities=17% Similarity=0.250 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHhcCCC-CEEEEcCCCCcchHH-HHHhcCceEEEeecCCCCCCC-CCHHHHHhhccc---CccEEEE
Q 022213 113 TLGCKQAVEVILSVLARPG-ANVLLPRPGWPYYEG-IAQRKQVEVRHFDLLPERNWE-VDLDAVEALADK---NTAAMVI 186 (301)
Q Consensus 113 t~g~~~al~~~~~~l~~~g-d~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~v~l 186 (301)
..|--++-..+...+-..+ |.=++..++.+.... -....+-++..++. +..+. .+.+.+.+.++. +.+++++
T Consensus 72 vvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~--Ee~~~~~~~~~ll~~~~~~l~~~~~vVL 149 (467)
T COG2870 72 VVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDF--EEKFPIEDENKLLEKIKNALKSFDALVL 149 (467)
T ss_pred eeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecc--cccCcchhHHHHHHHHHHHhhcCCEEEE
Confidence 3344444444444443222 334444555543211 11122334444443 32221 333444443332 4677787
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccc
Q 022213 187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHL 225 (301)
Q Consensus 187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~ 225 (301)
+.-. -|...+ .++++++|++.|+++++|--=.+|
T Consensus 150 SDY~--KG~L~~---~q~~I~~ar~~~~pVLvDPKg~Df 183 (467)
T COG2870 150 SDYA--KGVLTN---VQKMIDLAREAGIPVLVDPKGKDF 183 (467)
T ss_pred eccc--cccchh---HHHHHHHHHHcCCcEEECCCCcch
Confidence 7655 455555 899999999999999999655443
No 493
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=37.23 E-value=2.3e+02 Score=23.20 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCCeEEE
Q 022213 201 HLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 201 ~l~~i~~~~~~~~~~ii~ 218 (301)
.+.++++.++++|+.+|.
T Consensus 124 ~v~~a~~~Ak~~G~~vI~ 141 (196)
T PRK10886 124 DIVKAVEAAVTRDMTIVA 141 (196)
T ss_pred HHHHHHHHHHHCCCEEEE
Confidence 389999999999998874
No 494
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=37.21 E-value=2.1e+02 Score=25.38 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=52.4
Q ss_pred HHHHHhcCCCCEEEEcC---CCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccC--
Q 022213 122 VILSVLARPGANVLLPR---PGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNV-- 196 (301)
Q Consensus 122 ~~~~~l~~~gd~Vl~~~---p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~-- 196 (301)
-+..-|.+.|..|++|- +.+.......-.+| ++.+.+.+. .|.+.++++.+....++=+..-..+|+..
T Consensus 76 yvvnklak~GSQviiPyR~d~~~~r~lkvmGdLG-Qvl~~~fd~-----~DedSIr~vvk~sNVVINLIGrd~eTknf~f 149 (391)
T KOG2865|consen 76 YVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDLG-QVLFMKFDL-----RDEDSIRAVVKHSNVVINLIGRDYETKNFSF 149 (391)
T ss_pred HHHHHHhhcCCeEEEeccCCccchhheeeccccc-ceeeeccCC-----CCHHHHHHHHHhCcEEEEeeccccccCCccc
Confidence 44556667899999983 33333222222232 455554433 57888988887655555444455666653
Q ss_pred --CCHHHHHHHHHHHHhCCC
Q 022213 197 --FTYHHLQEIAEMARKLRV 214 (301)
Q Consensus 197 --~~~~~l~~i~~~~~~~~~ 214 (301)
.+..--++|+++|++.|+
T Consensus 150 ~Dvn~~~aerlAricke~GV 169 (391)
T KOG2865|consen 150 EDVNVHIAERLARICKEAGV 169 (391)
T ss_pred ccccchHHHHHHHHHHhhCh
Confidence 233345899999999886
No 495
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=37.19 E-value=3.5e+02 Score=26.40 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcc-------hHHHHHhcCceEEE
Q 022213 85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPY-------YEGIAQRKQVEVRH 157 (301)
Q Consensus 85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~-------~~~~~~~~g~~~~~ 157 (301)
..+++++.|++...- +.|+.|+++.|+.+-.+.+...+++.|..+-+..+.|.+ ...+++......+.
T Consensus 9 ~n~~l~~wv~e~~~l-----~~Pd~v~~cdGS~ee~~~l~~~~v~~G~~~~L~~~k~~~~~~~rsdp~DvARve~rTfI~ 83 (601)
T PRK04210 9 KNPKLLEWVAEVAEL-----TQPDRVVWCDGSEEEYDRLRDQAVEAGTEIKLNPEKRPNSFLARSDPSDVARVEDRTFIC 83 (601)
T ss_pred CCHHHHHHHHHHHHh-----hCCCEEEEeCCCHHHHHHHHHHHHHcCCEeeccCCCCCceeeccCChhhhhhcccceEEe
Confidence 347888888888754 689999999999999999999998888777776554432 23444544444444
Q ss_pred eecC----CCCCCCCCHHHHHhhcc
Q 022213 158 FDLL----PERNWEVDLDAVEALAD 178 (301)
Q Consensus 158 ~~~~----~~~~~~~~~~~l~~~~~ 178 (301)
.+-. +.++ ..+++++.+.+.
T Consensus 84 s~~~~dagp~nn-w~~p~e~~~~l~ 107 (601)
T PRK04210 84 SEKEEDAGPTNN-WMDPAEMRETLK 107 (601)
T ss_pred cCchhhcCCccC-cCCHHHHHHHHH
Confidence 3321 1222 367777777653
No 496
>PRK05884 short chain dehydrogenase; Provisional
Probab=36.70 E-value=2.4e+02 Score=23.17 Aligned_cols=51 Identities=24% Similarity=0.139 Sum_probs=28.3
Q ss_pred CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEee
Q 022213 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFD 159 (301)
Q Consensus 109 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~ 159 (301)
++++|.++...=..+.+.|.+.|.+|++....-.......+..+......+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D 52 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCD 52 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecC
Confidence 366776665555667777777887877664432222233333344444333
No 497
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.57 E-value=1.5e+02 Score=20.89 Aligned_cols=67 Identities=9% Similarity=0.113 Sum_probs=41.2
Q ss_pred CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVI-INPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217 (301)
Q Consensus 141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii 217 (301)
...|...++..|.+.... ...++..-....|+..++ +..+|++ ++.. +-.-...+-+.|+++++.++
T Consensus 12 ~~~~~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~~i~-~aD~VIv~t~~v-------sH~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHH--GRDGGDEKKASRLPSKIK-KADLVIVFTDYV-------SHNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred HHHHHHHHHHcCCEEEEE--ecCCCCccchhHHHHhcC-CCCEEEEEeCCc-------ChHHHHHHHHHHHHcCCcEE
Confidence 346778888999998877 222333334345777664 3555433 3331 22336778888999998776
No 498
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=36.37 E-value=3e+02 Score=24.25 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=34.6
Q ss_pred CCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc
Q 022213 168 VDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG 223 (301)
Q Consensus 168 ~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~ 223 (301)
++.+.+.+.+......-++..+..+ +..++.+.++++++..+++-=++|+|..-.
T Consensus 161 ~~~~~l~~~~~~~~~l~vl~~~~~~-~~~~~~~~l~~~l~~l~~~~D~VIID~p~~ 215 (322)
T TIGR03815 161 LPAGALRDALPRRGGLSVLSWGRAV-GAALPPAAVRAVLDAARRGGDLVVVDLPRR 215 (322)
T ss_pred cCHHHHHHhCCCcCCeEEEecCCCC-cCCCCHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 4556666655433334455555433 344777888888888776555888898744
No 499
>PRK06182 short chain dehydrogenase; Validated
Probab=36.31 E-value=2.7e+02 Score=23.58 Aligned_cols=52 Identities=17% Similarity=0.008 Sum_probs=28.5
Q ss_pred CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeec
Q 022213 108 DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDL 160 (301)
Q Consensus 108 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~ 160 (301)
..+++|.++...-..+.+.|.+.|.+|++..-.-..... +...++.....++
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~-~~~~~~~~~~~Dv 55 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMED-LASLGVHPLSLDV 55 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHhCCCeEEEeeC
Confidence 356666665555566666777789888765433222222 2223555555554
No 500
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=36.09 E-value=87 Score=29.01 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCc----chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCC
Q 022213 117 KQAVEVILSVLARPGANVLLPRPGWP----YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNP 192 (301)
Q Consensus 117 ~~al~~~~~~l~~~gd~Vl~~~p~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np 192 (301)
.+++...... +++-+.+.+++|... ++..+.+..|..+ ++..+..+..+++.+++.++.+..-++..-++.-
T Consensus 264 ~eai~~~~~l-~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~i---pi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~i 339 (408)
T cd03313 264 EELIDYYKEL-VKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKI---QIVGDDLFVTNPERLKKGIEKKAANALLIKVNQI 339 (408)
T ss_pred HHHHHHHHHH-HHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCC---eEEcCCcccCCHHHHHHHHHhCCCCEEEEccccc
Confidence 5555544433 333457789999865 3444444442222 2212222334788898888765554556666655
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213 193 CGNVFTYHHLQEIAEMARKLRVMVVA 218 (301)
Q Consensus 193 tG~~~~~~~l~~i~~~~~~~~~~ii~ 218 (301)
.|.+ +..+++++|+++|+.+++
T Consensus 340 GGit----e~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 340 GTLT----ETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred CCHH----HHHHHHHHHHHcCCeEEc
Confidence 4443 588999999999988763
Done!