BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022215
         (301 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1X4T|A Chain A, Solution Structure Of Isy1 Domain In Hypothetical Protein
          Length = 92

 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 62/71 (87%)

Query: 32  YLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERR 91
           +LASEC +L +A+KWR+QI+ EI +KVA+IQN GLGE R+RDLNDEINKL+REKGHWE R
Sbjct: 15  FLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVR 74

Query: 92  IFELGGPNYTK 102
           I ELGGP+Y K
Sbjct: 75  IKELGGPDYGK 85


>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
 pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
          Length = 391

 Score = 31.2 bits (69), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 20/44 (45%)

Query: 119 NPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRI 162
           N +G  P  R   AA +LPGV  +   PPE R   T      RI
Sbjct: 231 NATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARI 274


>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
           Aglycone
 pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
           Aglycone
 pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
           Thymidine Diphosphate
 pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
           Thymidine Diphosphate
          Length = 387

 Score = 31.2 bits (69), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 20/44 (45%)

Query: 119 NPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRI 162
           N +G  P  R   AA +LPGV  +   PPE R   T      RI
Sbjct: 231 NATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARI 274


>pdb|2D9W|A Chain A, Solution Structure Of The Ph Domain Of Docking Protein 2
           From Human
          Length = 127

 Score = 28.5 bits (62), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 149 LRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWRRLDEIKKEAMK 208
           L++++T    ++R  AS YG  D     LE  EGP E+  R +A ++  RL +     ++
Sbjct: 20  LQQQQTFGKKWRRFGASLYGGSDCALARLELQEGP-EKPRRCEAARKVIRLSDC----LR 74

Query: 209 TVKSGEEAS 217
             ++G EAS
Sbjct: 75  VAEAGGEAS 83


>pdb|2ZYZ|B Chain B, Pyrobaculum Aerophilum Splicing Endonuclease
 pdb|2ZYZ|D Chain D, Pyrobaculum Aerophilum Splicing Endonuclease
          Length = 183

 Score = 28.1 bits (61), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 40  LSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLND--EINKLIREKGH 87
           L  A+K R ++M E GR+VA  +   LG  R+R+ ++  +I K  R+ G+
Sbjct: 56  LYLAEKGRLKVMGEDGREVAPEELAALGRERMRNFDEIYKIYKYFRDLGY 105


>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
 pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
 pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
          Length = 582

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 70  RLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLE 111
           RLRDLN  +N L+  K   ++ +  +G  +         DLE
Sbjct: 66  RLRDLNQAVNNLVELKSTQQKSVLRVGTLSSDDLLTLAADLE 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,050,499
Number of Sequences: 62578
Number of extensions: 334952
Number of successful extensions: 686
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 10
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)