Query 022215
Match_columns 301
No_of_seqs 161 out of 195
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:50:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4t_A Hypothetical protein LO 100.0 1.4E-39 4.9E-44 259.8 9.5 79 26-104 9-87 (92)
2 1use_A VAsp, vasodilator-stimu 32.5 58 0.002 22.7 4.0 36 40-80 6-41 (45)
3 1j1e_C Troponin I, TNI; THIN f 29.3 20 0.00068 31.6 1.5 71 7-81 26-105 (180)
4 1j1d_C Troponin I, TNI; THIN f 28.9 26 0.0009 29.3 2.1 71 7-81 26-105 (133)
5 3u5c_X RP37, S28, YS14, 40S ri 23.8 25 0.00084 30.0 1.1 11 131-141 112-122 (145)
6 2jee_A YIIU; FTSZ, septum, coi 21.5 56 0.0019 25.3 2.6 24 74-97 53-76 (81)
7 2vqe_L 30S ribosomal protein S 19.9 25 0.00086 29.7 0.3 17 129-145 86-102 (135)
8 3gz2_P Invasin IPAB, 62 kDa an 19.6 37 0.0013 25.4 1.2 28 64-97 26-53 (78)
9 2xzm_L 40S ribosomal protein S 15.2 36 0.0012 28.9 0.2 11 131-141 111-121 (142)
10 2ff6_H CG4944-PC, isoform C; p 14.6 1.3E+02 0.0044 18.7 2.5 19 257-278 6-24 (26)
No 1
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=100.00 E-value=1.4e-39 Score=259.81 Aligned_cols=79 Identities=71% Similarity=1.181 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHHHHhhcCCCcchhhhchHHHHHHHHHhhchHHHHHHhcCCCCcccc
Q 022215 26 PKERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHF 104 (301)
Q Consensus 26 ~~~rRP~~~s~v~~l~~aekWR~~Ii~EIs~kv~~Iqd~~L~E~~IRDLNDeINkL~rEK~~WE~rI~eLGGpdY~~~~ 104 (301)
++.+||++|++|+||++||+||++||+|||+||++||||+||||+|||||||||+||+||+|||+||++||||||++.+
T Consensus 9 ~~~~RP~~~~~v~~l~~AekWR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY~~~~ 87 (92)
T 1x4t_A 9 VKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVS 87 (92)
T ss_dssp SCCCCCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSTTTS
T ss_pred ccccCCCChhhcCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999765
No 2
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=32.53 E-value=58 Score=22.70 Aligned_cols=36 Identities=17% Similarity=0.467 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhcCCCcchhhhchHHHHH
Q 022215 40 LSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINK 80 (301)
Q Consensus 40 l~~aekWR~~Ii~EIs~kv~~Iqd~~L~E~~IRDLNDeINk 80 (301)
-.+-++|...|+.|+-+-|++..|. -|..+..|+|+
T Consensus 6 ~~dle~~KqEIL~E~RkElqK~K~E-----IIeAi~~El~~ 41 (45)
T 1use_A 6 YSDLQRVKQELLEEVKKELQKVKEE-----IIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 3678999999999999999888753 24445555554
No 3
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=29.30 E-value=20 Score=31.58 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHHHHhhcCC--------CcchhhhchHH
Q 022215 7 KAQSMLNRYIALQAEEKKK-PKERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGL--------GEHRLRDLNDE 77 (301)
Q Consensus 7 KA~smL~R~~~~k~~e~~~-~~~rRP~~~s~v~~l~~aekWR~~Ii~EIs~kv~~Iqd~~L--------~E~~IRDLNDe 77 (301)
||...|.+=++.++++... --.|+|-+ .+.+|.+++ -+++.+|+-..|..+-..-. .+|.|-|||-.
T Consensus 26 kA~e~L~~E~e~k~eEKkkiLaER~kPL--nid~Lse~~--L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~r 101 (180)
T 1j1e_C 26 IAKQELEREAEERRGEKGRALSTRAQPL--ELAGLGFAE--LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQK 101 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCC--CGGGCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCCCCHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 5677777777777766541 12456654 567766665 46677777777666543221 34555555555
Q ss_pred HHHH
Q 022215 78 INKL 81 (301)
Q Consensus 78 INkL 81 (301)
||.|
T Consensus 102 V~DL 105 (180)
T 1j1e_C 102 IFDL 105 (180)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 4
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=28.92 E-value=26 Score=29.33 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHHHHhhcCC--------CcchhhhchHH
Q 022215 7 KAQSMLNRYIALQAEEKKK-PKERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGL--------GEHRLRDLNDE 77 (301)
Q Consensus 7 KA~smL~R~~~~k~~e~~~-~~~rRP~~~s~v~~l~~aekWR~~Ii~EIs~kv~~Iqd~~L--------~E~~IRDLNDe 77 (301)
||...|.+=++.++++... --.|+|-+ .++++.+.+ -..+.+|+-.+|..+-..-. .+|.|-|||-.
T Consensus 26 kA~e~l~kE~e~k~eeKkkiLaER~~pL--~id~ls~~~--L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~r 101 (133)
T 1j1d_C 26 IAKQELEREAEERRGEKGRALSTRAQPL--ELAGLGFAE--LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQK 101 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCTTCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCCCCHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHH
Confidence 5667777777777766542 12455544 377776665 46777777777766543221 45666666666
Q ss_pred HHHH
Q 022215 78 INKL 81 (301)
Q Consensus 78 INkL 81 (301)
||.|
T Consensus 102 V~Dl 105 (133)
T 1j1d_C 102 IFDL 105 (133)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 5
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Probab=23.81 E-value=25 Score=30.05 Aligned_cols=11 Identities=45% Similarity=0.652 Sum_probs=9.5
Q ss_pred eccccCchhhh
Q 022215 131 GAAKKLPGVRE 141 (301)
Q Consensus 131 GrAKeLPgVkE 141 (301)
|+.+|||||+-
T Consensus 112 g~v~DlPGVry 122 (145)
T 3u5c_X 112 KAKGDIPGVRF 122 (145)
T ss_dssp SCCSSSTTCCE
T ss_pred CccCCCCceeE
Confidence 67999999984
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.54 E-value=56 Score=25.28 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.2
Q ss_pred chHHHHHHHHHhhchHHHHHHhcC
Q 022215 74 LNDEINKLIREKGHWERRIFELGG 97 (301)
Q Consensus 74 LNDeINkL~rEK~~WE~rI~eLGG 97 (301)
|..++++|=.|...|..||..|=|
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999987633
No 7
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=19.91 E-value=25 Score=29.68 Aligned_cols=17 Identities=41% Similarity=0.516 Sum_probs=13.2
Q ss_pred eeeccccCchhhhhhcC
Q 022215 129 YFGAAKKLPGVRELFEK 145 (301)
Q Consensus 129 YFGrAKeLPgVkELfe~ 145 (301)
.-|+.+||||||--+-.
T Consensus 86 rGgrv~DlPGVrykvVr 102 (135)
T 2vqe_L 86 RGGRVKDLPGVRYHIVR 102 (135)
T ss_dssp EECCCTTSTTCCEEECT
T ss_pred cCCCcCCCCCeeEEEEe
Confidence 36999999999965443
No 8
>3gz2_P Invasin IPAB, 62 kDa antigen; tetratricopeptide repeat, TPR, chaperone, chaperone binding virulence, secreted, transmembrane; 2.65A {Shigella flexneri}
Probab=19.60 E-value=37 Score=25.41 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=22.0
Q ss_pred cCCCcchhhhchHHHHHHHHHhhchHHHHHHhcC
Q 022215 64 EGLGEHRLRDLNDEINKLIREKGHWERRIFELGG 97 (301)
Q Consensus 64 ~~L~E~~IRDLNDeINkL~rEK~~WE~rI~eLGG 97 (301)
..||+..|..-||..||||. .-|.+|-.
T Consensus 26 telgdntiqaandaanklfs------ltiadlta 53 (78)
T 3gz2_P 26 TELGDNTIQAANDAANKLFS------LTIADLTA 53 (78)
T ss_pred eccCccHHHHHHHHhhhhhe------eehhhhcc
Confidence 46899999999999999975 34555543
No 9
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Probab=15.16 E-value=36 Score=28.95 Aligned_cols=11 Identities=45% Similarity=0.658 Sum_probs=10.0
Q ss_pred eccccCchhhh
Q 022215 131 GAAKKLPGVRE 141 (301)
Q Consensus 131 GrAKeLPgVkE 141 (301)
|+.+||||||-
T Consensus 111 grv~DlPGVry 121 (142)
T 2xzm_L 111 HAVGDIPGVRF 121 (142)
T ss_dssp SCCTTCSSCCE
T ss_pred CccCCCCCceE
Confidence 89999999984
No 10
>2ff6_H CG4944-PC, isoform C; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.05A {Drosophila melanogaster}
Probab=14.59 E-value=1.3e+02 Score=18.73 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=13.5
Q ss_pred ccCCCHHHHHHHHHHHHHHHHH
Q 022215 257 VPLPDDKEIEKMVIERKKMELL 278 (301)
Q Consensus 257 v~vPt~~eIe~~LlerkK~eLL 278 (301)
.+|||.+.|++ ++..+.|+
T Consensus 6 n~LP~kE~ieq---EK~~~~l~ 24 (26)
T 2ff6_H 6 NPLPDKEGEGE---ESVHRRHR 24 (26)
T ss_pred CCCCCHHHHHH---HHHHHHHh
Confidence 48999999996 44445544
Done!