Query 022215
Match_columns 301
No_of_seqs 161 out of 195
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 15:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022215.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022215hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4ta1 a.2.15.1 (A:7-86) Pre- 100.0 4.9E-40 3.6E-44 254.8 9.4 78 25-102 2-79 (80)
2 d2uubl1 b.40.4.5 (L:5-122) Rib 35.3 4.2 0.00031 31.7 0.3 13 131-143 84-96 (118)
3 d1tjla1 a.2.14.1 (A:7-110) Dna 20.3 47 0.0034 24.5 4.0 59 30-93 18-83 (104)
4 d2hg7a1 d.186.2.1 (A:1-60) Pha 18.2 26 0.0019 24.0 1.8 16 254-269 35-50 (60)
5 d1q9ca_ a.22.1.3 (A:) Histone 17.5 30 0.0022 28.0 2.3 50 35-85 3-54 (172)
6 d2doaa1 a.4.5.81 (A:8-98) RNA 17.2 13 0.00091 26.9 -0.1 17 156-172 62-78 (91)
7 d1jiha1 d.240.1.1 (A:390-509) 14.0 82 0.006 23.1 4.0 27 36-62 16-42 (120)
8 d1yf2a2 d.287.1.2 (A:221-425) 13.4 66 0.0048 23.3 3.3 13 256-268 152-164 (205)
9 d1bg1a1 a.47.1.1 (A:136-321) S 12.8 2.3E+02 0.017 22.5 6.8 63 12-84 105-180 (186)
10 d3bi1a1 a.48.2.1 (A:594-750) G 11.9 84 0.0061 23.6 3.5 26 70-95 35-60 (157)
No 1
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00 E-value=4.9e-40 Score=254.80 Aligned_cols=78 Identities=73% Similarity=1.230 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHHHHhhcCCCcchhhhchHHHHHHHHHhhchHHHHHHhcCCCCcc
Q 022215 25 KPKERRPYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTK 102 (301)
Q Consensus 25 ~~~~rRP~~~s~v~~l~~aekWR~~Ii~EIs~kv~~Iqd~~L~E~~IRDLNDeINkL~rEK~~WE~rI~eLGGpdY~~ 102 (301)
.++.+||+++++|+||++|++||++||+|||+||++||||+||||+||||||+||+||+||+|||.||++||||||++
T Consensus 2 ~~~~rRP~~~~~v~~l~~aekwR~~iikEI~~kvs~Iqn~~L~e~~IRdLNDeINkL~reK~~WE~rI~eLGGpdY~r 79 (80)
T d1x4ta1 2 KVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGK 79 (80)
T ss_dssp SSCCCCCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSTT
T ss_pred CccccCCCCchhccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]}
Probab=35.30 E-value=4.2 Score=31.73 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=11.2
Q ss_pred eccccCchhhhhh
Q 022215 131 GAAKKLPGVRELF 143 (301)
Q Consensus 131 GrAKeLPgVkELf 143 (301)
||.+||||||--+
T Consensus 84 Grv~DlPGVry~v 96 (118)
T d2uubl1 84 GRVKDLPGVRYHI 96 (118)
T ss_dssp CCCTTSTTCCEEB
T ss_pred CccccCCCcEEEE
Confidence 8999999998644
No 3
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA, alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Probab=20.28 E-value=47 Score=24.49 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCCCCCCCCChHHH-------HHHHHHHHHHHHHhHHHHhhcCCCcchhhhchHHHHHHHHHhhchHHHHH
Q 022215 30 RPYLASECRDLSEA-------DKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIF 93 (301)
Q Consensus 30 RP~~~s~v~~l~~a-------ekWR~~Ii~EIs~kv~~Iqd~~L~E~~IRDLNDeINkL~rEK~~WE~rI~ 93 (301)
+|.--..--+-.+- ..|+.+|+.+|...+..+++.+.. +-|.+|.-. .-+-+.++.||+
T Consensus 18 ~p~~~e~YMn~~QL~~Fr~~L~~~k~eL~~e~~~t~~~~~~~~~~---~~D~~DrAs--~E~~~~leLR~~ 83 (104)
T d1tjla1 18 QEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAAN---FPDPVDRAA--QEEEFSLELRNR 83 (104)
T ss_dssp CCCTTCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CCCGGGHHH--HHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc---cCChHHHHH--HHHHHHHHHHHH
Confidence 44433444554443 467788899999999999863322 335555432 224445555554
No 4
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=18.22 E-value=26 Score=24.02 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=13.2
Q ss_pred cccccCCCHHHHHHHH
Q 022215 254 VVHVPLPDDKEIEKMV 269 (301)
Q Consensus 254 ~~~v~vPt~~eIe~~L 269 (301)
-...|+||++|+++|-
T Consensus 35 ~l~aP~PTe~EL~~~w 50 (60)
T d2hg7a1 35 NLRAPLPTQAELETWW 50 (60)
T ss_dssp CSSSCCCCHHHHHHHH
T ss_pred ecCCCCCcHHHHHHHH
Confidence 4456899999999986
No 5
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.46 E-value=30 Score=27.99 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=38.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHHHHhhcCCC--cchhhhchHHHHHHHHHh
Q 022215 35 SECRDLSEADKWRQQIMREIGRKVAEIQNEGLG--EHRLRDLNDEINKLIREK 85 (301)
Q Consensus 35 s~v~~l~~aekWR~~Ii~EIs~kv~~Iqd~~L~--E~~IRDLNDeINkL~rEK 85 (301)
-+.++-..+-+||+-.+-=|.+-+.+++ |+|+ +-.+--+|+.||.|+.+-
T Consensus 3 ~~~~~~~~~~~w~g~f~~~i~KVl~qvh-P~l~i~~~Al~~i~~~i~~ll~~L 54 (172)
T d1q9ca_ 3 YEFFSEENAPKWRGLLVPALKKVQGQVH-PTLESNDDALQYVEELILQLLNML 54 (172)
T ss_dssp CCTTSTTTHHHHTTSSHHHHHHHHHHHC-SSSBCCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHhC-CCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3456666788999988877877777777 7775 667788999999996553
No 6
>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.21 E-value=13 Score=26.92 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=14.2
Q ss_pred HHHhccCCCCCccccCC
Q 022215 156 YDIYKRIDASYYGYRDD 172 (301)
Q Consensus 156 ~~l~k~id~~YYG~~De 172 (301)
.++++.||+.||+|..+
T Consensus 62 ~~~~~Evdp~~~~Ys~~ 78 (91)
T d2doaa1 62 DCMYKDVQKDWPGYSEG 78 (91)
T ss_dssp SSGGGGCCSCCTTCCSH
T ss_pred HHHHhHcCccCCCCCHH
Confidence 45789999999999664
No 7
>d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.98 E-value=82 Score=23.06 Aligned_cols=27 Identities=11% Similarity=0.537 Sum_probs=23.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHHHHh
Q 022215 36 ECRDLSEADKWRQQIMREIGRKVAEIQ 62 (301)
Q Consensus 36 ~v~~l~~aekWR~~Ii~EIs~kv~~Iq 62 (301)
.|+++.+|.+|-..+..||...+.+-.
T Consensus 16 ~~~s~~~~~~WL~~la~el~~RL~~~~ 42 (120)
T d1jiha1 16 SCNSIVDCISWLEVFCAELTSRIQDLE 42 (120)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999988776543
No 8
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=13.38 E-value=66 Score=23.32 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=8.7
Q ss_pred cccCCCHHHHHHH
Q 022215 256 HVPLPDDKEIEKM 268 (301)
Q Consensus 256 ~v~vPt~~eIe~~ 268 (301)
.+|||+.++-++.
T Consensus 152 ~i~lP~~~eQ~~I 164 (205)
T d1yf2a2 152 KIPLPPLEEQKQI 164 (205)
T ss_dssp EEEECCHHHHHHH
T ss_pred cccCCCHHHHHHH
Confidence 4688887775544
No 9
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.84 E-value=2.3e+02 Score=22.46 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCChHHHHHHH-----------HHH--HHHHHHhHHHHhhcCCCcchhhhchHHH
Q 022215 12 LNRYIALQAEEKKKPKERRPYLASECRDLSEADKWR-----------QQI--MREIGRKVAEIQNEGLGEHRLRDLNDEI 78 (301)
Q Consensus 12 L~R~~~~k~~e~~~~~~rRP~~~s~v~~l~~aekWR-----------~~I--i~EIs~kv~~Iqd~~L~E~~IRDLNDeI 78 (301)
|..|...|.-...|. |.+. +|.+-..|= .+| +.|...|++-.. +.+.. .+..||+.+
T Consensus 105 L~~WKrrQQlA~iG~----P~~~----~LDqLQ~W~e~lAe~i~q~Rqqlk~l~~l~~k~~y~~-dpi~~-~~~~L~~~~ 174 (186)
T d1bg1a1 105 LADWKRRQQIACIGG----PPNI----CLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKG-DPIVQ-HRPMLEERI 174 (186)
T ss_dssp HHHHHHHHHHHHTTC----CCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTT-CTTTT-THHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----Cccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Ccccc-chhHHHHHH
Confidence 678888776444432 4333 377777774 333 556777777333 34433 679999999
Q ss_pred HHHHHH
Q 022215 79 NKLIRE 84 (301)
Q Consensus 79 NkL~rE 84 (301)
+.||+.
T Consensus 175 ~~Ll~~ 180 (186)
T d1bg1a1 175 VELFRN 180 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 10
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.86 E-value=84 Score=23.62 Aligned_cols=26 Identities=8% Similarity=0.279 Sum_probs=17.0
Q ss_pred hhhhchHHHHHHHHHhhchHHHHHHh
Q 022215 70 RLRDLNDEINKLIREKGHWERRIFEL 95 (301)
Q Consensus 70 ~IRDLNDeINkL~rEK~~WE~rI~eL 95 (301)
.+..|.+.|+.+...-..|+..+..+
T Consensus 35 ~~~~L~~a~~~f~~aa~~~~~~~~~~ 60 (157)
T d3bi1a1 35 SFDSLFSAVKNFTEIASKFSERLQDF 60 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666666666544
Done!