BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022216
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 15/223 (6%)
Query: 60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKA 119
EN+ + ++ V GA G + ++ +L KG A VR+ ++ ++ + IV A
Sbjct: 15 ENLYFQGXRVLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQGPEL--RERGASDIVVA 72
Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
++ E + +I +AVV A G P +D +G + ++ KRG+ RFI
Sbjct: 73 NLEEDFSHAFASI----DAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIX 128
Query: 180 ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPT 239
+SS+ G Y L+AK A+ +++S ++YTI+RPG L NE T
Sbjct: 129 VSSVGTVDPDQGPXNXRHY---------LVAKRLADDELKRSSLDYTIVRPGPLSNEEST 179
Query: 240 GNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS 282
G + + + +I+R VA+V E + + K E+++
Sbjct: 180 GKVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVLN 222
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 41/260 (15%)
Query: 69 IFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
+ V GA+G +G +IV + L +G F K VR + K + D+T+
Sbjct: 7 VLVTGASGRTG-QIVYKKLKEGSDKFVAKGLVR----SAQGKEKIGGEADVFIGDITDAD 61
Query: 126 AKLSEAIGDDSEAVVCAT--GFQPGWD---------LFA----PWKVDNFGTVNLVEACR 170
+ G D+ ++ + +PG+D +F P +VD G N ++A +
Sbjct: 62 SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAK 121
Query: 171 KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL--TLIAKLQAEQYIRKSGINYTII 228
GV +++ S MG NP + LN G L+ K +AEQY+ SG YTII
Sbjct: 122 VAGVKHIVVVGS-------MGGT-NPDHP-LNKLGNGNILVWKRKAEQYLADSGTPYTII 172
Query: 229 RPGGLRN-EPPTGNIIMETEDTLYE---GTISRDQVAEVAVEALLHPESSYKVVEIISRV 284
R GGL + E +++ +D L + T+ R VAEV ++ALL E+ K ++ S+
Sbjct: 173 RAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKP 232
Query: 285 DA---PKRSYEDLFGSIKQR 301
+ P + ++ LF + R
Sbjct: 233 EGTSTPTKDFKALFSQVTSR 252
>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr121
Length = 219
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 30/188 (15%)
Query: 68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKA---DVTEG 124
KIF+ G+TG GK +++ L + + AG R +++ P VKA DV
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV--------PQYNNVKAVHFDVDWT 53
Query: 125 SAKLSEAI-GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
+ ++ + G D+ V +G G L KVD +G V L +A K V RFIL+S+I
Sbjct: 54 PEEXAKQLHGXDAIINVSGSG---GKSLL---KVDLYGAVKLXQAAEKAEVKRFILLSTI 107
Query: 184 LVNGAAMGQILNPAYIF---LNVFGLTLIAKLQAEQYIRK-SGINYTIIRPGGLRNEPPT 239
L P + IAK A+ Y+ K + ++YTII+PG L E T
Sbjct: 108 FS--------LQPEKWIGAGFDALKDYYIAKHFADLYLTKETNLDYTIIQPGALTEEEAT 159
Query: 240 GNIIMETE 247
G I + E
Sbjct: 160 GLIDINDE 167
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
KK+F+ G G G I E LL +G V G+ + + KD+P+L V+ + + A
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKV-VGIDNFATGRREHLKDHPNLTFVEGSIAD-HA 79
Query: 127 KLSEAIGD-DSEAVV-CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
+++ IGD +AVV A ++ D + + G N+V+A +K V RF+ + L
Sbjct: 80 LVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTAL 139
Query: 185 VNGAA-------MGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIR 229
G + NPA I+K E Y+ SG+++ R
Sbjct: 140 CYGVKPIQQPVRLDHPRNPAN------SSYAISKSANEDYLEYSGLDFVTFR 185
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
K KKI + GA+G G ++ + L +GF V A VR +K K +N L++ KADV+
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI----ENEHLKVKKADVSSL 58
Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNL--VEACRKRGVNRFILISS 182
G D AV+ A F PGW+ P D V L ++ +K GVNRF+ +
Sbjct: 59 DEVCEVCKGAD--AVISA--FNPGWN--NPDIYDETIKVYLTIIDGVKKAGVNRFLXVGG 112
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP-SLQIVKADVTEGS 125
KKI + GATG +G + Q + G+ V VRD + L + P +V DV + +
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD----SSRLPSEGPRPAHVVVGDVLQAA 59
Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
G D+ V+ T + +P V + G N+V A + GV++ + +S +
Sbjct: 60 DVDKTVAGQDAVIVLLGT-----RNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL 114
Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG 240
+ +P + + +T ++ + +R+SG+ Y + P + ++P TG
Sbjct: 115 -------LWDPTKVPPRLQAVT-DDHIRMHKVLRESGLKYVAVMPPHIGDQPLTG 161
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKA 119
+ +K V G TG +V+ LL KG+AV VRD D K ++ L+I +A
Sbjct: 7 IGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRA 66
Query: 120 DVT-EGSAKLSEAIGDDSEAVVCATGF---QPGWDLFAPWKVDNFGTVNLVEAC-RKRGV 174
D+T E S + A D V F P D+ P G VN+++AC R + V
Sbjct: 67 DLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQ---GVVNVMKACTRAKSV 123
Query: 175 NRFILISS 182
R IL SS
Sbjct: 124 KRVILTSS 131
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKA 119
+ + + V GA+G G +V +LL +G+ V+A VRD K L K L + KA
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKA 63
Query: 120 DVT-EGSAKLSEAI 132
D+ EGS EAI
Sbjct: 64 DLADEGS--FDEAI 75
>pdb|2BKA|A Chain A, Cc3(Tip30)crystal Strucure
Length = 242
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 49 MGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS 108
M ++E + E+ ++ K +F+ GA+G +G+ +++++L +G K + + L+
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL----IGRRKLT 56
Query: 109 KDNPSLQIVKADVT--EGSAKLSEAIGDDSEAVVC--ATGFQPGWDLFAPWKVDNFGTVN 164
D + + V +V E + A C T + G + F +VD +
Sbjct: 57 FDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFV--RVDRDYVLK 114
Query: 165 LVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGIN 224
E + G F L+SS G + +++L V G + AK++ ++ R
Sbjct: 115 SAELAKAGGCKHFNLLSS-------KGADKSSNFLYLQVKG-EVEAKVEELKFDR----- 161
Query: 225 YTIIRPGGL 233
Y++ RPG L
Sbjct: 162 YSVFRPGVL 170
>pdb|3EW7|A Chain A, Crystal Structure Of The Lmo0794 Protein From Listeria
Monocytogenes. Northeast Structural Genomics Consortium
Target Lmr162
Length = 221
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
KI + GATG +G RI+E+ +G V A VR+ K +++ + + I++ D+ +
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK----ITQTHKDINILQKDIFD---- 53
Query: 128 LSEAIGDDSEAVVCATGFQP 147
L+ + D VV A G P
Sbjct: 54 LTLSDLSDQNVVVDAYGISP 73
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 31/213 (14%)
Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPS-LQIVKADVTEGS 125
K + + GA G + ++ QL K +K + AK + K P+ QI+ DV +
Sbjct: 24 KNVLILGAGGQIARHVINQLADKQ-TIKQTLFARQPAK--IHKPYPTNSQIIXGDVLNHA 80
Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
A G D +V A G DL + +++ A + V R I + S+ +
Sbjct: 81 ALKQAXQGQD---IVYAN--LTGEDL-------DIQANSVIAAXKACDVKRLIFVLSLGI 128
Query: 186 NGAAMGQIL--NPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNII 243
G+ + N A V G L +A I SG+ YTI+RP L +E +II
Sbjct: 129 YDEVPGKFVEWNNA-----VIGEPLKPFRRAADAIEASGLEYTILRPAWLTDE----DII 179
Query: 244 ---METEDTLYEGTI-SRDQVAEVAVEALLHPE 272
+ + + ++GTI SR VA + + + PE
Sbjct: 180 DYELTSRNEPFKGTIVSRKSVAALITDIIDKPE 212
>pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|B Chain B, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|C Chain C, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|D Chain D, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
Length = 264
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD----LDKAKTTLSKDNPSLQIVKADVT 122
+ + T GK++ E+LLAKG++V ++ K T LQ V+ADVT
Sbjct: 8 RHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVT 67
Query: 123 E 123
+
Sbjct: 68 K 68
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
KI V GATG +G IV + +G V A VRD KA L +L VK +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATL--VKEPLV----- 54
Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPW 155
L+EA D +AVV A L PW
Sbjct: 55 LTEADLDSVDAVVDA--------LSVPW 74
>pdb|4HNG|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008
pdb|4HNH|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
pdb|4HNH|B Chain B, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
Length = 221
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 118 KADVTEGS----AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG 173
+ V EGS KL +A+ + VV + G D+ ++V+A ++
Sbjct: 53 RVTVIEGSFQNPGKLEQAVTNAE--VVFVGAMESGSDM-----------ASIVKALSRKN 99
Query: 174 VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
+ R I +S ++G + + F N+ + + QA +R+S +NYTI+R L
Sbjct: 100 IRRVIGVSMAGLSGEF--PVALEKWTFDNLPISYVQGERQARNVLRESNLNYTILRLTWL 157
Query: 234 RNEPPTGNIIMETEDTLY-EGTISRDQVAEVAVEALLH 270
N+P + + E + + +SR+ V + A+ +LH
Sbjct: 158 YNDPEKTDYELIPEGAQFNDAQVSREAVVK-AIFDILH 194
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 45 NSTKMGKSEITEEAEENVSVKQKKI-FVAGATGSSGKRIVEQLLAKGFAVKAGVR 98
N ++ IT ++ V+ +KI + G TG G + E LL KG+ V +R
Sbjct: 6 NGSRSDSESITAPKADSTVVEPRKIALITGITGQDGSYLTEFLLGKGYEVHGLIR 60
>pdb|4IPT|A Chain A, The Crystal Structure Of A Short-chain
Dehydrogenases/reductase (ethylated) From Veillonella
Parvula Dsm 2008
Length = 221
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 164 NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI 223
++V+A ++ + R I +S ++G + + F N+ + + QA +R+S +
Sbjct: 90 SIVKALSRKNIRRVIGVSXAGLSGEF--PVALEKWTFDNLPISYVQGERQARNVLRESNL 147
Query: 224 NYTIIRPGGLRNEPPTGNIIMETEDTLY-EGTISRDQVAEVAVEALLH 270
NYTI+R L N+P + + E + + +SR+ V A+ +LH
Sbjct: 148 NYTILRLTWLYNDPEKTDYELIPEGAQFNDAQVSREAVV-XAIFDILH 194
>pdb|3R6D|A Chain A, Crystal Structure Of Nad-Dependent EpimeraseDEHYDRATASE
FROM Veillonella Parvula Dsm 2008 With Cz-Methylated
Lysine
Length = 221
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 213 QAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLY-EGTISRDQVAEVAVEALLH 270
QA +R+S +NYTI+R L N+P + + E + + +SR+ V + A+ +LH
Sbjct: 137 QARNVLRESNLNYTILRLTWLYNDPEXTDYELIPEGAQFNDAQVSREAVVK-AIFDILH 194
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP-SLQIVKADVTEGSA 126
++ V G G G IVE LLA+G V LD T ++ P + + D+ +
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAV----LDNLATGKRENVPKGVPFFRVDLRDKEG 57
Query: 127 --------KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFI 178
+ + ++A V + P D ++V+ G +NL+EACR+ GV + +
Sbjct: 58 VERAFREFRPTHVSHQAAQASVKVSVEDPVLD----FEVNLLGGLNLLEACRQYGVEKLV 113
Query: 179 LISSILVNGAAMGQI 193
S+ GA G++
Sbjct: 114 FAST---GGAIYGEV 125
>pdb|2GYY|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GZ1|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ1|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ2|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ2|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ3|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|3PWK|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWK|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PYL|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|C Chain C, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|D Chain D, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYX|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PYX|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PZB|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3PZB|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3Q11|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q11|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q1L|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|C Chain C, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|D Chain D, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
Length = 366
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 39/146 (26%)
Query: 53 EITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP 112
E TE A E V + +F AG++ S+ +AVKAGV +D T+ + NP
Sbjct: 56 ETTETAFEGVDIA---LFSAGSSTSAKY--------APYAVKAGVVVVDN--TSYFRQNP 102
Query: 113 SLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEAC--- 169
+ +V +V + A+ + + C N T+ ++ A
Sbjct: 103 DVPLVVPEVN------AHALDAHNGIIACP----------------NCSTIQMMVALEPV 140
Query: 170 -RKRGVNRFILISSILVNGAAMGQIL 194
+K G++R I+ + V+GA MG IL
Sbjct: 141 RQKWGLDRIIVSTYQAVSGAGMGAIL 166
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK 102
+ V GA G +VEQLL G+ V+ R K
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASK 47
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK 102
+ V GA G +VEQLL G+ V+ R K
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASK 47
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 21/169 (12%)
Query: 65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-----DLDKAKTTLSKDNPSLQIVKA 119
K+ ++ + G TG GKRIV ++ G R ++DK + L ++++A
Sbjct: 3 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 62
Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
+ + +L +A+ + G + K LVEA ++ G + L
Sbjct: 63 SLDD-HQRLVDALKQVDVVISALAGGVLSHHILEQLK--------LVEAIKEAGNIKRFL 113
Query: 180 ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTII 228
S ++ M L P +T I K + + I + I YT +
Sbjct: 114 PSEFGMDPDIMEHALQPG-------SITFIDKRKVRRAIEAASIPYTYV 155
>pdb|1Q87|A Chain A, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Tetragonal Form)
pdb|1Q87|B Chain B, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Tetragonal Form)
pdb|1Q88|A Chain A, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Monoclinic Form)
pdb|1Q88|B Chain B, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Monoclinic Form)
pdb|1Q89|A Chain A, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Cubic Crystal Form)
Length = 221
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 252 EGTISRDQVAEVAVEALLHPESSYK-VVEIISRVDAPK----RSYEDLF 295
+GT+ RD + E A E PE + +E+IS + AP+ +S DL+
Sbjct: 51 DGTVMRDFLIEKAAEYFKQPEQPKQNAIEVISAIMAPQEEQTKSKADLY 99
>pdb|1B4J|H Chain H, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An Anti-Gamma-Interferon
Antibody
Length = 220
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 109 KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEA 168
KD +L + K+ T +L+ +DS CA GF P FA W GT+ V A
Sbjct: 65 KDKATLTVDKSSST-AYIQLNSLTSEDSAVYYCARGFLP---WFADW---GQGTLVTVSA 117
Query: 169 CRKRGVNRFILISS 182
+G + F L S
Sbjct: 118 ASTKGPSVFPLAPS 131
>pdb|2FMU|A Chain A, Crystal Structure Of A Tat-Interacting Protein Homologue
(Htatip2, Aw111545, Cc3, Tip30) From Mus Musculus At
2.30 A Resolution
Length = 248
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD---NPSLQI 116
E+ ++ K +F+ GA+G +GK +++++L + K + + + K T ++ N + ++
Sbjct: 18 EDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTL--IGRRKLTFEEEAYKNVNQEV 75
Query: 117 V---KADVTEGSAKLSEAIGDDSEAVVCATGF---QPGWDLFAPWKVDNFGTVNLVEACR 170
V K DV SA +G C G + G + F +VD + E +
Sbjct: 76 VDFEKLDVY-ASAFQGHDVG------FCCLGTTRSKAGAEGFV--RVDRDYVLKSAELAK 126
Query: 171 KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRP 230
G F L+SS G + ++++L V G + AK++ ++ R S + RP
Sbjct: 127 AGGCKHFNLLSS-------RGADKSSSFLYLQVKG-EVEAKVEELKFDRLS-----VFRP 173
Query: 231 GGL 233
G L
Sbjct: 174 GVL 176
>pdb|1LU9|A Chain A, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LU9|B Chain B, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LU9|C Chain C, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LUA|A Chain A, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
pdb|1LUA|B Chain B, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
pdb|1LUA|C Chain C, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
Length = 287
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQI-VKADV 121
SVK KK V TG G R L +G V R LDKA+ N ++ V A
Sbjct: 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE 175
Query: 122 TEGSAKLSEAI 132
T A +EA+
Sbjct: 176 TADDASRAEAV 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,188,045
Number of Sequences: 62578
Number of extensions: 315522
Number of successful extensions: 965
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 31
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)