Query 022218
Match_columns 301
No_of_seqs 194 out of 1136
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4453 Predicted ER membrane 100.0 1E-43 2.2E-48 316.7 15.8 245 18-299 22-269 (269)
2 COG0170 SEC59 Dolichol kinase 99.9 4.8E-25 1E-29 199.6 17.0 193 93-298 14-214 (216)
3 KOG2468 Dolichol kinase [Lipid 99.8 1.2E-20 2.6E-25 183.2 14.2 189 92-294 307-507 (510)
4 PF01148 CTP_transf_1: Cytidyl 99.8 1.7E-19 3.7E-24 164.0 21.0 214 70-299 23-256 (259)
5 PRK11624 cdsA CDP-diglyceride 99.1 2.6E-09 5.7E-14 100.8 17.0 107 166-276 122-241 (285)
6 COG0575 CdsA CDP-diglyceride s 98.9 3.5E-07 7.6E-12 85.3 19.5 106 167-275 109-223 (265)
7 PLN02594 phosphatidate cytidyl 98.7 1.1E-07 2.3E-12 91.5 12.5 54 192-245 129-183 (342)
8 PLN02953 phosphatidate cytidyl 98.7 1E-06 2.2E-11 86.0 19.3 74 199-276 280-357 (403)
9 PRK04032 hypothetical protein; 97.5 0.00021 4.6E-09 62.1 6.5 65 208-276 23-91 (159)
10 COG4589 Predicted CDP-diglycer 97.0 0.04 8.6E-07 51.4 15.6 48 198-246 184-233 (303)
11 KOG1440 CDP-diacylglycerol syn 96.9 0.0071 1.5E-07 59.6 10.6 51 194-244 226-277 (432)
12 TIGR00297 conserved hypothetic 95.2 1.5 3.2E-05 40.8 16.0 78 191-275 115-202 (237)
13 PF01940 DUF92: Integral membr 94.2 2.3 5E-05 39.2 14.8 99 191-296 110-223 (226)
14 COG1836 Predicted membrane pro 89.5 18 0.00039 33.7 20.4 45 197-241 130-184 (247)
15 PF01864 DUF46: Putative integ 88.7 0.99 2.2E-05 40.0 5.6 57 218-275 44-104 (175)
16 PF14126 DUF4293: Domain of un 79.3 3.3 7.2E-05 35.6 4.6 34 125-158 115-148 (149)
17 PF07281 INSIG: Insulin-induce 58.5 49 0.0011 29.8 7.5 78 203-293 88-176 (193)
18 PF01554 MatE: MatE; InterPro 56.2 57 0.0012 26.5 7.2 24 194-217 43-66 (162)
19 KOG1608 Protein transporter of 40.5 2.7E+02 0.0058 27.1 9.7 20 94-113 189-208 (374)
20 PF09335 SNARE_assoc: SNARE as 33.0 2.2E+02 0.0048 22.2 7.0 23 192-214 22-44 (123)
21 PF11283 DUF3084: Protein of u 24.8 64 0.0014 25.0 2.3 14 204-217 20-33 (79)
22 PF11712 Vma12: Endoplasmic re 23.8 2.9E+02 0.0062 23.1 6.4 47 229-275 83-129 (142)
23 COG0586 DedA Uncharacterized m 22.7 60 0.0013 29.1 2.1 20 197-216 67-86 (208)
24 COG0534 NorM Na+-driven multid 20.0 1.1E+02 0.0024 30.6 3.5 46 194-239 291-336 (455)
No 1
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=100.00 E-value=1e-43 Score=316.71 Aligned_cols=245 Identities=44% Similarity=0.700 Sum_probs=209.4
Q ss_pred cCCCCccccCCCCceeeccCCcCCcccccCCCcccchhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 022218 18 VGSAATHVFPISPRVFRGSMSVWPARVSLDPHTLRFRVSAAARVGHLLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQS 97 (301)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~~~~~~~~v~~~~~l~~r~~l~~e 97 (301)
|.+| +-.-.+|| +.+.+|++++ .+++.+++- ..+++-. +...||.++.+...+++++.+.+++...||+.++|.
T Consensus 22 f~Sp--~~~it~p~-~~~~~ss~~~-~~~~~r~s~-L~s~~w~-ns~kheiprkv~hssigf~~l~l~g~g~kr~~i~~~ 95 (269)
T KOG4453|consen 22 FCSP--GFLITSPC-FIGLTSSGSA-TQLRARRSL-LSSAVWT-NSLKHEIPRKVAHSSIGFALLLLFGSGTKRNVIQQS 95 (269)
T ss_pred cCCC--Cceeeeee-eeccccCCCc-ccchHHHhH-hHHhhcc-hhhhhhhchhHhhhhHHHHHHHHHhcccchhhhhHH
Confidence 4455 44667888 9988888777 555555432 3333333 779999999999999999999999999999999999
Q ss_pred cchhhhhHhHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccccccccchhccceeccccCcccchHHHHHHHHH
Q 022218 98 LSRKLVHILSGLLFMVSWPIFSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLI 177 (301)
Q Consensus 98 l~RKlvHi~~Glv~~l~~plf~~~~~a~~la~l~pll~~lrl~~~gl~~~~~~~~~~sl~R~~e~~~ll~G~lyy~l~~~ 177 (301)
+.||++|+..|.++.+.||+|+ |+..++++.. .||.|++ +++|++||.+++.
T Consensus 96 Li~kfi~ifigdlirlnWP~Fs------------------rLy~r~lg~l---------mre~erh-l~nGvLfYvLgl~ 147 (269)
T KOG4453|consen 96 LIRKFIHIFIGDLIRLNWPIFS------------------RLYIRGLGIL---------MREVERH-LLNGVLFYVLGLL 147 (269)
T ss_pred HHHHHHHHHHhHHHHhccHHHH------------------HHHHhccccc---------chHHHHH-HhcchHHHHHHHH
Confidence 9999999999999999999985 5555666643 4444333 6899999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhhHHHHhhhcccCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc--ccccch
Q 022218 178 LSALVFWRDSPVGVISLSMMCGGDGIADVIGRRFGSMKIFYNEKKSWAGSISMFVFGFLVSTGMLYFYSILG--YYQLDW 255 (301)
Q Consensus 178 l~~~lf~~~~piai~~i~~l~~GDg~AaiVG~~fGr~kl~~~~~KS~eGSla~fi~s~l~~~~~l~~f~~~g--~~~~~~ 255 (301)
+...+||+|.|++.+.++.+| |++|++||||||+.|.++++|||++||++||.++++.++.+++||.+.| +.+.+|
T Consensus 148 fs~~ff~kespi~s~~Llswc--Dt~AdtvGRKfG~~tpk~aknKSlAGSIgaft~Gvf~c~vy~gyf~s~g~~~l~~s~ 225 (269)
T KOG4453|consen 148 FSAVFFWKESPIGSISLLSWC--DTIADTVGRKFGSTTPKYAKNKSLAGSIGAFTFGVFICIVYLGYFSSLGPDYLHMSW 225 (269)
T ss_pred HHhhccccccHHHHHHHHHHh--hhHHHHHhhhccccCCCcCCCccccchHHHHHHHHHHHHHHHHHHhccCcchhcccc
Confidence 999999999998888888887 9999999999999999999999999999999999999999999999888 877776
Q ss_pred -HHHHHHHHHHHHHHHHHhhcCCCCCCCcccchHHHHHHHHHHHh
Q 022218 256 -IETLQRVALVSLVATVVESLPITEVVDDNISVPLASMVAAYLSF 299 (301)
Q Consensus 256 -~~~~~~~liia~vatlvEal~~~~~~dDNLtIPl~~~ll~~L~~ 299 (301)
.......++++++++++|++++.+ .|||+|||+++++.+|+.|
T Consensus 226 r~~~~~l~l~~g~vaAlvEsldi~~-lDDNltIpv~Sal~~yl~f 269 (269)
T KOG4453|consen 226 RETTLQLVLMVGMVAALVESLDITD-LDDNLTIPVASALAAYLSF 269 (269)
T ss_pred ccchHHHHHHHHHHHHHHhcCCccC-CCCCeeehHHHHHHHHhcC
Confidence 344557889999999999999986 9999999999999999975
No 2
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=99.93 E-value=4.8e-25 Score=199.61 Aligned_cols=193 Identities=28% Similarity=0.414 Sum_probs=119.8
Q ss_pred ccccccchhhhhHhHHHHHHHHhhhccCchHHHHHH--HHHHH--HHHHHHHHhcc---ccccccchhccceeccccCcc
Q 022218 93 LIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFA--ALVPL--VNCLRLVINGL---SLVKDDGLIKSVTREGNPKEL 165 (301)
Q Consensus 93 ~l~~el~RKlvHi~~Glv~~l~~plf~~~~~a~~la--~l~pl--l~~lrl~~~gl---~~~~~~~~~~sl~R~~e~~~l 165 (301)
..+.|+.||..|+..+.+... .-+..+........ .+.+. ++..|....+. .....+++.+..+|++|+++.
T Consensus 14 ~~~~~~~rk~~hi~~~~l~~~-~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~e~~~~ 92 (216)
T COG0170 14 DTRLEVRRKLLHISGGLLFLL-YILRDKFAIILFLLILLIILLLEFELFRLLIPGLEGKVTLLLSELLSLIEREREKNGP 92 (216)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhHHHhcCC
Confidence 457789999999977665542 22222211111111 11222 22333222110 001224577788999887764
Q ss_pred cchHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHhhhHHHHhhhcccCCccccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 022218 166 LRGPLYYVLML-ILSALVFWRDSPVGVISLSMMCGGDGIADVIGRRFGSMKIFYNEKKSWAGSISMFVFGFLVSTGMLYF 244 (301)
Q Consensus 166 l~G~lyy~l~~-~l~~~lf~~~~piai~~i~~l~~GDg~AaiVG~~fGr~kl~~~~~KS~eGSla~fi~s~l~~~~~l~~ 244 (301)
..|..+|..+. .+...+|.+ ..+.++++++++|||+|+++|+||||||.+.+++||+|||++||+++++++..+..+
T Consensus 93 ~~g~~~~~~~~~i~~~~lf~~--~~~~~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~KSleGSla~fi~~~l~~~~~~~~ 170 (216)
T COG0170 93 GLGGIIYFIGGGLLASLLFPI--EVAIAGILVLALGDGLASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVLLVLYGY 170 (216)
T ss_pred CcCcHHHHHHHHHHHHHHccH--HHHHHHHHHHHHhhHHHHHhCcccCccccccCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 23445555444 444445543 578899999999999999999999999888899999999999999999998765433
Q ss_pred HhhccccccchHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchHHHHHHHHHHH
Q 022218 245 YSILGYYQLDWIETLQRVALVSLVATVVESLPITEVVDDNISVPLASMVAAYLS 298 (301)
Q Consensus 245 f~~~g~~~~~~~~~~~~~liia~vatlvEal~~~~~~dDNLtIPl~~~ll~~L~ 298 (301)
.. ............++..++..| .. ..|||+|||+.+++.+++.
T Consensus 171 ~~------~~~~~i~~~~~~~~~~~~~~~--~~--~~~DNltIPl~~~~~~~~~ 214 (216)
T COG0170 171 LG------AFVGAIGALVLEVGATATSLE--LL--PLDDNLTIPLFAALLAYLL 214 (216)
T ss_pred HH------hHHHHHHHHHHHHHHHHhhcc--CC--CCCCceeHHHHHHHHHHHh
Confidence 22 111111111223333444555 32 3799999999999998875
No 3
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=99.85 E-value=1.2e-20 Score=183.16 Aligned_cols=189 Identities=22% Similarity=0.402 Sum_probs=129.9
Q ss_pred hccccccchhhhhHhHHHHHHHHhhhccCchHHHHHH-----HHHHHHHHHHHHHh-ccccccccchhccceeccccCcc
Q 022218 92 KLIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFA-----ALVPLVNCLRLVIN-GLSLVKDDGLIKSVTREGNPKEL 165 (301)
Q Consensus 92 ~~l~~el~RKlvHi~~Glv~~l~~plf~~~~~a~~la-----~l~pll~~lrl~~~-gl~~~~~~~~~~sl~R~~e~~~l 165 (301)
.+.++...||.+|...-++++ |-..-++.-.++| +.+..+|++|+... .++- .-+..++....|+|..++
T Consensus 307 s~~~~t~~RK~~HlliV~l~i---P~li~d~~fL~lA~s~~LavFl~lE~IR~~ri~PlG~-~l~~fl~~F~DeRDsGpL 382 (510)
T KOG2468|consen 307 SKLNETTSRKYFHLLIVLLYI---PGLIFDPNFLYLAFSGALAVFLFLEYIRFLRIPPLGS-ALHLFLSRFTDERDSGPL 382 (510)
T ss_pred hhhhHHHHHHHHHHHHHHHHh---hHHhcCchhHHHHHhhHHHHHHHHHHHHHhcCCCchH-HHHHHHHHhcccccCCce
Confidence 334445999999996544433 3322233333333 24556789997521 1110 012455556667777777
Q ss_pred cchHHHHHHHHHHHHHHhcC--C--chHH-HHHHHHHHhhhHHHHhhhcccCCccccCCCCCchHHHHHHHHHHHHHHHH
Q 022218 166 LRGPLYYVLMLILSALVFWR--D--SPVG-VISLSMMCGGDGIADVIGRRFGSMKIFYNEKKSWAGSISMFVFGFLVSTG 240 (301)
Q Consensus 166 l~G~lyy~l~~~l~~~lf~~--~--~pia-i~~i~~l~~GDg~AaiVG~~fGr~kl~~~~~KS~eGSla~fi~s~l~~~~ 240 (301)
...++|..+|+.+..+.-.. + ...+ ..|++.+++||++|+++|+||||+||+ +.+||+||++|+.++.++++..
T Consensus 383 IiSh~yLLiGcslPIWms~~p~~~~ral~~laGiLalGiGDTmASiiG~r~G~~RW~-~TkKTlEGT~Afivs~~iv~~l 461 (510)
T KOG2468|consen 383 IISHFYLLIGCSLPIWMSNSPCGGDRALALLAGILALGIGDTMASIIGKRYGRIRWS-GTKKTLEGTLAFIVSSFIVCLL 461 (510)
T ss_pred eHHHHHHHHhcccchhccCCCCCchhhhhhhhhheeeccchHHHHHHhhhhcceecC-CCcceeehhhHHHHHHHHHHHH
Confidence 88899999999888776432 1 2222 468999999999999999999999998 5699999999999999998877
Q ss_pred HHHHHhhcccc-ccchHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchHHHHHHH
Q 022218 241 MLYFYSILGYY-QLDWIETLQRVALVSLVATVVESLPITEVVDDNISVPLASMVA 294 (301)
Q Consensus 241 ~l~~f~~~g~~-~~~~~~~~~~~liia~vatlvEal~~~~~~dDNLtIPl~~~ll 294 (301)
.. .+ +.|+. +..|. ..+..+..++++|+++. .+||+.+|+....+
T Consensus 462 l~-i~-~~~v~~~~t~~----~~L~a~~~salLEa~T~---q~DNlllPl~~~il 507 (510)
T KOG2468|consen 462 LL-IF-KAGVFLSLTWW----QTLFACLLSALLEAYTT---QNDNLLLPLYMYIL 507 (510)
T ss_pred HH-Hh-hcccccchHHH----HHHHHHHHHHHHHHhhh---ccccchHHHHHHHH
Confidence 55 33 34543 23343 34667788889999964 79999999976544
No 4
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=99.85 E-value=1.7e-19 Score=164.02 Aligned_cols=214 Identities=25% Similarity=0.413 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhHhHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccccccc
Q 022218 70 ATAAVLVGAYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFAALVPLVNCLRLVINGLSLVKD 149 (301)
Q Consensus 70 a~~~~~~~~~~~v~~~~~l~~r~~l~~el~RKlvHi~~Glv~~l~~plf~~~~~a~~la~l~pll~~lrl~~~gl~~~~~ 149 (301)
.....+..+...+...|+...++..+++..|+..|+.....+...............+..........+++...
T Consensus 23 ~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------ 96 (259)
T PF01148_consen 23 WYFLLLVAVIIFLGFWELFRLFRIKSRSKFRLIIRILSWIFFLILFLFFYLRWLIPYFFATILIIALLLFLVLG------ 96 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHhhhc------
Confidence 33445555666677777777777777778888887755544443333332222333333333333333222111
Q ss_pred cchhccceeccccC-cccchHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHhhhHHHHhhhcccCCcccc-CCCCCchHH
Q 022218 150 DGLIKSVTREGNPK-ELLRGPLYYVLMLILSALVFWR-DSPVGVISLSMMCGGDGIADVIGRRFGSMKIF-YNEKKSWAG 226 (301)
Q Consensus 150 ~~~~~sl~R~~e~~-~ll~G~lyy~l~~~l~~~lf~~-~~piai~~i~~l~~GDg~AaiVG~~fGr~kl~-~~~~KS~eG 226 (301)
+++.++. ....+..|....+.......+. +.+..+.+++++++||++|+++||+||||+.| .++||||||
T Consensus 97 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EG 169 (259)
T PF01148_consen 97 -------ERRIRRIISTLFGLIYFGIFLLLLLIFFWFFGPPLALIGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEG 169 (259)
T ss_pred -------chHHHHHHHHHHHHHHHhHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHH
Confidence 1111111 1122333333222111222232 33456789999999999999999999999554 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH---HHHHHHHHhh--------------cCCCCCCCcccchHH
Q 022218 227 SISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVAL---VSLVATVVES--------------LPITEVVDDNISVPL 289 (301)
Q Consensus 227 Sla~fi~s~l~~~~~l~~f~~~g~~~~~~~~~~~~~li---ia~vatlvEa--------------l~~~~~~dDNLtIPl 289 (301)
|++|++++++++.++..+.+... .++...+..+++ ++.++.++|+ +|-.+..+||+..|+
T Consensus 170 si~~~i~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~~iKD~g~lipghGg~lDr~d~~l 246 (259)
T PF01148_consen 170 SIAGFISSFIISFLLLYYLSSFF---LSWWQAILISLLASIVEAFGDLFESAIKRDAGIKDSGNLIPGHGGILDRFDSLL 246 (259)
T ss_pred HhHHHHHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCcCCcccchHhHH
Confidence 99999999999887766543210 122222233333 4444557777 454445799999999
Q ss_pred HHHHHHHHHh
Q 022218 290 ASMVAAYLSF 299 (301)
Q Consensus 290 ~~~ll~~L~~ 299 (301)
.++.+.|.++
T Consensus 247 ~~~~~~~~~~ 256 (259)
T PF01148_consen 247 FAAPVFYILL 256 (259)
T ss_pred HHHHHHHHHH
Confidence 9999988875
No 5
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=99.13 E-value=2.6e-09 Score=100.79 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=67.1
Q ss_pred cchHHHHHHHHHHHHHHhcC----C---chHHHHHHHHH-HhhhHHHHhhhcccCCcccc--CCCCCchHHHHHHHHHHH
Q 022218 166 LRGPLYYVLMLILSALVFWR----D---SPVGVISLSMM-CGGDGIADVIGRRFGSMKIF--YNEKKSWAGSISMFVFGF 235 (301)
Q Consensus 166 l~G~lyy~l~~~l~~~lf~~----~---~piai~~i~~l-~~GDg~AaiVG~~fGr~kl~--~~~~KS~eGSla~fi~s~ 235 (301)
..|.+|+.........+... + .+..+..++++ ..+|..|+++||+|||||+. .+|||||||++++++++.
T Consensus 122 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~G~~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~ 201 (285)
T PRK11624 122 IFGVLTIVPFFWGMLALRAWHYDENHYSGAWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAA 201 (285)
T ss_pred HHHHHHHHHHHHHHHHHHcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHH
Confidence 45777765544333323211 1 22233333333 45999999999999999983 899999999999999999
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHH---HHHHHHHHHHhhcC
Q 022218 236 LVSTGMLYFYSILGYYQLDWIETLQRV---ALVSLVATVVESLP 276 (301)
Q Consensus 236 l~~~~~l~~f~~~g~~~~~~~~~~~~~---liia~vatlvEal~ 276 (301)
+.+..+..+.. .. .++...+..+ .+.+.++.++||.-
T Consensus 202 ~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~GDL~ES~l 241 (285)
T PRK11624 202 VISWLFGMWAP-LD---VAPVTLLICSIVAALASVLGDLTESMF 241 (285)
T ss_pred HHHHHHHHHHc-cc---ccHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88876644322 11 1121122222 33466677999974
No 6
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=98.85 E-value=3.5e-07 Score=85.34 Aligned_cols=106 Identities=25% Similarity=0.264 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHhhhHHHHhhhcccCCccc-c-CCCCCchHHHHHHHHHHHHHHHH
Q 022218 167 RGPLYYVLMLILSALVFWR----DSPVGVISLSMMCGGDGIADVIGRRFGSMKI-F-YNEKKSWAGSISMFVFGFLVSTG 240 (301)
Q Consensus 167 ~G~lyy~l~~~l~~~lf~~----~~piai~~i~~l~~GDg~AaiVG~~fGr~kl-~-~~~~KS~eGSla~fi~s~l~~~~ 240 (301)
.+..|+...+......+.. ...+.....+..-.+|..|+.+||++||||+ | .+|||||||.+++.+.+.+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~ 188 (265)
T COG0575 109 FGLLYVGVGLLALLPFRLGVLYSGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVL 188 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHH
Confidence 5667776665444333321 1112223333444699999999999999985 4 79999999999999998888776
Q ss_pred HHHHHhhccccccchHHHHH---HHHHHHHHHHHHhhc
Q 022218 241 MLYFYSILGYYQLDWIETLQ---RVALVSLVATVVESL 275 (301)
Q Consensus 241 ~l~~f~~~g~~~~~~~~~~~---~~liia~vatlvEal 275 (301)
+..+.+. .+..+...+. ...+++.++.++||.
T Consensus 189 ~~~~~~~---~~~~~~~~~~l~~~~~l~~~lGDL~eS~ 223 (265)
T COG0575 189 VIFLLSS---LILNIWTLLILGLLLVLTSQLGDLFESY 223 (265)
T ss_pred HHHHHhh---hhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5544321 1111221222 234456667799954
No 7
>PLN02594 phosphatidate cytidylyltransferase
Probab=98.75 E-value=1.1e-07 Score=91.50 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=45.4
Q ss_pred HHHHHHHhhhHHHHhhhcccCCcccc-CCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 022218 192 ISLSMMCGGDGIADVIGRRFGSMKIF-YNEKKSWAGSISMFVFGFLVSTGMLYFY 245 (301)
Q Consensus 192 ~~i~~l~~GDg~AaiVG~~fGr~kl~-~~~~KS~eGSla~fi~s~l~~~~~l~~f 245 (301)
..+.+....|.+|+++|+++||||+. .++||||||.++.++++.+.+.++..++
T Consensus 129 l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKTwEGfiGg~i~T~i~~~~~~~~~ 183 (342)
T PLN02594 129 LPASLIVINDIAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANIM 183 (342)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 34444456999999999999999986 7899999999999999999988776543
No 8
>PLN02953 phosphatidate cytidylyltransferase
Probab=98.75 E-value=1e-06 Score=86.03 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=52.7
Q ss_pred hhhHHHHhhhcccCCcccc-CCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHH---HHHHHHHHHHHhh
Q 022218 199 GGDGIADVIGRRFGSMKIF-YNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQR---VALVSLVATVVES 274 (301)
Q Consensus 199 ~GDg~AaiVG~~fGr~kl~-~~~~KS~eGSla~fi~s~l~~~~~l~~f~~~g~~~~~~~~~~~~---~liia~vatlvEa 274 (301)
..|..|+++|+++||||+. .++||||||.+++++++++++.+...++. . ...+...+.. ..+.+.++.++|+
T Consensus 280 ~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l~---~-~~~~~~~i~lg~li~~~~~~GDL~eS 355 (403)
T PLN02953 280 ATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLS---W-PQSLFSSIAFGFLNFFGSVFGDLTES 355 (403)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4899999999999999997 78999999999999999888776543321 1 0111111222 2344667779999
Q ss_pred cC
Q 022218 275 LP 276 (301)
Q Consensus 275 l~ 276 (301)
.-
T Consensus 356 ~i 357 (403)
T PLN02953 356 MI 357 (403)
T ss_pred HH
Confidence 74
No 9
>PRK04032 hypothetical protein; Provisional
Probab=97.54 E-value=0.00021 Score=62.13 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=41.1
Q ss_pred hccc-CCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHH---HHHHHHHHHhhcC
Q 022218 208 GRRF-GSMKIFYNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVA---LVSLVATVVESLP 276 (301)
Q Consensus 208 G~~f-Gr~kl~~~~~KS~eGSla~fi~s~l~~~~~l~~f~~~g~~~~~~~~~~~~~l---iia~vatlvEal~ 276 (301)
||++ +++|+ .++||||||.+++++.+.+.+.++.+++.. . ..++...+..++ +.+.++.++||.-
T Consensus 23 g~~~~dg~~i-iSP~KTwEG~iGGv~~~~l~~~~~~~~~~~-~--~~~~~~~~~~g~li~v~~~~GDL~eS~i 91 (159)
T PRK04032 23 GKTFVDGRRI-LGDGKTWRGLIGGILFGTLVGLIQNLLVPA-Y--IGALGVAIILAFLLSFGALLGDMLGSFI 91 (159)
T ss_pred CCcCCCCCee-CCCCCcHHHhHHHHHHHHHHHHHHHHHHcc-c--hhHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6777 45566 689999999999999999888766443221 0 011221222233 3455566999874
No 10
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=97.02 E-value=0.04 Score=51.37 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=41.5
Q ss_pred HhhhHHHHhhhcccCCcccc--CCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 022218 198 CGGDGIADVIGRRFGSMKIF--YNEKKSWAGSISMFVFGFLVSTGMLYFYS 246 (301)
Q Consensus 198 ~~GDg~AaiVG~~fGr~kl~--~~~~KS~eGSla~fi~s~l~~~~~l~~f~ 246 (301)
=..|-+-++-|+.|||||+- .+++||+||-+++.+...+.+.... |+.
T Consensus 184 q~nDV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~-~lT 233 (303)
T COG4589 184 ELNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILG-LLT 233 (303)
T ss_pred HHHHHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHH-HhC
Confidence 37999999999999999994 7899999999999999988887654 444
No 11
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=96.93 E-value=0.0071 Score=59.65 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=40.7
Q ss_pred HHHHHhhhHHHHhhhcccCCccc-cCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 022218 194 LSMMCGGDGIADVIGRRFGSMKI-FYNEKKSWAGSISMFVFGFLVSTGMLYF 244 (301)
Q Consensus 194 i~~l~~GDg~AaiVG~~fGr~kl-~~~~~KS~eGSla~fi~s~l~~~~~l~~ 244 (301)
......+|=+|+++|.+|||+++ ..+++|||||-+++.++.++.++++.+.
T Consensus 226 ~~lvicnDi~AY~~Gf~fGktPLiklSPKKTwEGFiGg~~~tvv~~i~~s~v 277 (432)
T KOG1440|consen 226 AGLVICNDIFAYLFGFFFGKTPLIKLSPKKTWEGFIGGTFGTVVFGILFSYV 277 (432)
T ss_pred hHhheeCchHHHHHhhhhcCCcccccCCCCccchhhchhHHHHHHHHHHHHH
Confidence 33334599999999999999876 4789999999999977777777665544
No 12
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=95.17 E-value=1.5 Score=40.76 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhHHHHhhhcccCCc--------ccc--CCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHH
Q 022218 191 VISLSMMCGGDGIADVIGRRFGSM--------KIF--YNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQ 260 (301)
Q Consensus 191 i~~i~~l~~GDg~AaiVG~~fGr~--------kl~--~~~~KS~eGSla~fi~s~l~~~~~l~~f~~~g~~~~~~~~~~~ 260 (301)
.++-..-+-+|..|+=+|..++|+ |.| .|+.=|++|+++.++++++++..... . +..+ +. .+.
T Consensus 115 f~~s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~~~~~-~---~~~~--~~-~~~ 187 (237)
T TIGR00297 115 YVASVATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALLGYL-L---GLIS--FK-GIL 187 (237)
T ss_pred HHHHHHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHHHHHH-H---hhcc--hH-HHH
Confidence 344445567999999999998873 223 56788999999999999988754322 1 2222 21 123
Q ss_pred HHHHHHHHHHHHhhc
Q 022218 261 RVALVSLVATVVESL 275 (301)
Q Consensus 261 ~~liia~vatlvEal 275 (301)
...+.+++++++|++
T Consensus 188 ~~~~aG~~Gsl~DSl 202 (237)
T TIGR00297 188 FSTLAAFAGTNLDSL 202 (237)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667778888874
No 13
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=94.25 E-value=2.3 Score=39.17 Aligned_cols=99 Identities=14% Similarity=0.071 Sum_probs=60.9
Q ss_pred HHHHHHHHhhhHHHHhhhcccCCccc--------c--CCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHH
Q 022218 191 VISLSMMCGGDGIADVIGRRFGSMKI--------F--YNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQ 260 (301)
Q Consensus 191 i~~i~~l~~GDg~AaiVG~~fGr~kl--------~--~~~~KS~eGSla~fi~s~l~~~~~l~~f~~~g~~~~~~~~~~~ 260 (301)
.++-+.-+-+|..|+=+|..++++.. | .|+.=|++|+++.+.++++++........ .+... +.
T Consensus 110 ~~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~~~~~~------~~~~~-~~ 182 (226)
T PF01940_consen 110 FLGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVAFLLGL------ISFPL-VL 182 (226)
T ss_pred HHHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHHHHHHc------cchHH-HH
Confidence 34444556799999999988876432 2 56778999999999999998876544321 11111 12
Q ss_pred HHHHHHHHHHHHhhcCC-----CCCCCcccchHHHHHHHHH
Q 022218 261 RVALVSLVATVVESLPI-----TEVVDDNISVPLASMVAAY 296 (301)
Q Consensus 261 ~~liia~vatlvEal~~-----~~~~dDNLtIPl~~~ll~~ 296 (301)
...+.+++++++|++-= .....||=.|=+.+.++.-
T Consensus 183 ~~~~~G~~Gsl~DSlLGAtlQ~G~~~l~N~~VN~lstl~~a 223 (226)
T PF01940_consen 183 LIALAGFLGSLLDSLLGATLQRGRGWLNNDAVNFLSTLIGA 223 (226)
T ss_pred HHHHHHHHHHHHHHHhhHHHhCCCCCcChhHHHHHHHHHHH
Confidence 23455566666555421 0124667666666555443
No 14
>COG1836 Predicted membrane protein [Function unknown]
Probab=89.51 E-value=18 Score=33.73 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=37.0
Q ss_pred HHhhhHHHHhhhcccCCccc--------c--CCCCCchHHHHHHHHHHHHHHHHH
Q 022218 197 MCGGDGIADVIGRRFGSMKI--------F--YNEKKSWAGSISMFVFGFLVSTGM 241 (301)
Q Consensus 197 l~~GDg~AaiVG~~fGr~kl--------~--~~~~KS~eGSla~fi~s~l~~~~~ 241 (301)
.+-.|.+|+=+|+.+||+.. + .++.-|++|+++.+++++++.+..
T Consensus 130 ta~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~~ 184 (247)
T COG1836 130 TANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALLS 184 (247)
T ss_pred HHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence 44699999999999998643 1 457789999999999999987654
No 15
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=88.73 E-value=0.99 Score=39.99 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=33.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc----ccccchHHHHHHHHHHHHHHHHHhhc
Q 022218 218 YNEKKSWAGSISMFVFGFLVSTGMLYFYSILG----YYQLDWIETLQRVALVSLVATVVESL 275 (301)
Q Consensus 218 ~~~~KS~eGSla~fi~s~l~~~~~l~~f~~~g----~~~~~~~~~~~~~liia~vatlvEal 275 (301)
.+++|||+|.+++.+.+.+++.+.... ...+ .+..+....+...+..++.+.+=|..
T Consensus 44 lGdgKTwrG~i~gvl~g~l~g~i~~~l-~~~~~~~~~~~~~~~~~~~~g~ll~~gamlGDl~ 104 (175)
T PF01864_consen 44 LGDGKTWRGFIGGVLAGTLVGIIQGLL-LPLSIFALYFYGSLFFNLLLGFLLGLGAMLGDLP 104 (175)
T ss_pred cCCCCeEEeeeHHHHHHHHHHHHHHHH-hhhcccccccccchHHHHHHHHHHHHHHHHhHHH
Confidence 478999999999999998888754322 1110 01122222333455566666665554
No 16
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=79.32 E-value=3.3 Score=35.59 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccchhcccee
Q 022218 125 RYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTR 158 (301)
Q Consensus 125 ~~la~l~pll~~lrl~~~gl~~~~~~~~~~sl~R 158 (301)
.-++...|++..+......-++.+||+++|+++|
T Consensus 115 ~~~g~~lp~vaii~~~LA~r~I~kDEkLVrS~DR 148 (149)
T PF14126_consen 115 FGIGFFLPLVAIIFLWLANRAIKKDEKLVRSADR 148 (149)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Confidence 3356667777644333322345789999999988
No 17
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=58.54 E-value=49 Score=29.76 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHhhhcccCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCC----
Q 022218 203 IADVIGRRFGSMKIFYNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVALVSLVATVVESLPIT---- 278 (301)
Q Consensus 203 ~AaiVG~~fGr~kl~~~~~KS~eGSla~fi~s~l~~~~~l~~f~~~g~~~~~~~~~~~~~liia~vatlvEal~~~---- 278 (301)
.++.+|..|+-+|+++.+ +.+-|++..+.+... +|+ +|.... .+..+.++++.++++|..-..
T Consensus 88 i~~FvGi~~airkl~w~s--~~Q~s~~lalln~~L-----W~l-----fDrT~s-Gf~ls~~va~~g~~~~~~l~~~~~~ 154 (193)
T PF07281_consen 88 IGAFVGISFAIRKLPWSS--SLQASITLALLNPGL-----WWL-----FDRTRS-GFLLSTAVALLGTLIEYGLVPDAVM 154 (193)
T ss_pred HHHHHHHHHHHhhCCCCc--HHHHHHHHHHHHHHH-----HHH-----hCCchh-HHHHHHHHHHHHHHhheeecccccc
Confidence 345678888989999865 578877766555432 222 233343 344577889999988876332
Q ss_pred -------CCCCcccchHHHHHH
Q 022218 279 -------EVVDDNISVPLASMV 293 (301)
Q Consensus 279 -------~~~dDNLtIPl~~~l 293 (301)
....|.+-++.-..-
T Consensus 155 ~~~~~~~~~~~d~~~v~~Wi~s 176 (193)
T PF07281_consen 155 LENGVYSYTSPDFLAVRSWIPS 176 (193)
T ss_pred ccccceeccccchhHHHHHHHH
Confidence 123466666665443
No 18
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=56.20 E-value=57 Score=26.53 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=20.4
Q ss_pred HHHHHhhhHHHHhhhcccCCcccc
Q 022218 194 LSMMCGGDGIADVIGRRFGSMKIF 217 (301)
Q Consensus 194 i~~l~~GDg~AaiVG~~fGr~kl~ 217 (301)
+...+++.|.+.++|+.+|++|..
T Consensus 43 ~~~~g~~~a~~~~~s~~~G~~~~~ 66 (162)
T PF01554_consen 43 MLIFGLATALQILISQNIGAGDYK 66 (162)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSTT
T ss_pred hhcccccccccceeeccccccccc
Confidence 455678999999999999998875
No 19
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.50 E-value=2.7e+02 Score=27.12 Aligned_cols=20 Identities=25% Similarity=0.462 Sum_probs=16.5
Q ss_pred cccccchhhhhHhHHHHHHH
Q 022218 94 IQQSLSRKLVHILSGLLFMV 113 (301)
Q Consensus 94 l~~el~RKlvHi~~Glv~~l 113 (301)
-++|+.||++|+..++..+.
T Consensus 189 Kkeeiprqlvyi~l~l~hI~ 208 (374)
T KOG1608|consen 189 KKEEIPRQLVYIILHLFHIA 208 (374)
T ss_pred hhhhccHHHHHHHHHHHHHH
Confidence 38999999999988876553
No 20
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=32.97 E-value=2.2e+02 Score=22.19 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=17.6
Q ss_pred HHHHHHHhhhHHHHhhhcccCCc
Q 022218 192 ISLSMMCGGDGIADVIGRRFGSM 214 (301)
Q Consensus 192 ~~i~~l~~GDg~AaiVG~~fGr~ 214 (301)
++.+-...||-.+..+||++|++
T Consensus 22 ~~~~g~~~g~~~~y~lgr~~~~~ 44 (123)
T PF09335_consen 22 IATLGAVLGSLLAYLLGRYFGRR 44 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444557999999999999953
No 21
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=24.81 E-value=64 Score=25.01 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=10.5
Q ss_pred HHhhhcccCCcccc
Q 022218 204 ADVIGRRFGSMKIF 217 (301)
Q Consensus 204 AaiVG~~fGr~kl~ 217 (301)
+|-+|+|.||+|+.
T Consensus 20 GD~iG~kvGKkrls 33 (79)
T PF11283_consen 20 GDRIGSKVGKKRLS 33 (79)
T ss_pred HHHHHHHHhHHHhh
Confidence 34678888888875
No 22
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=23.82 E-value=2.9e+02 Score=23.15 Aligned_cols=47 Identities=6% Similarity=0.010 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHhhc
Q 022218 229 SMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVALVSLVATVVESL 275 (301)
Q Consensus 229 a~fi~s~l~~~~~l~~f~~~g~~~~~~~~~~~~~liia~vatlvEal 275 (301)
.=++.+++.++.+.+|....-+...+...=+..+++.|++..++|..
T Consensus 83 ~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~ 129 (142)
T PF11712_consen 83 FNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVV 129 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555444433321110112222334566777777777765
No 23
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=22.70 E-value=60 Score=29.12 Aligned_cols=20 Identities=45% Similarity=0.546 Sum_probs=16.6
Q ss_pred HHhhhHHHHhhhcccCCccc
Q 022218 197 MCGGDGIADVIGRRFGSMKI 216 (301)
Q Consensus 197 l~~GDg~AaiVG~~fGr~kl 216 (301)
...||...+.+||++|++.+
T Consensus 67 a~lGd~i~Y~iGr~~G~~~l 86 (208)
T COG0586 67 ALLGDLISYWIGRRFGRKLL 86 (208)
T ss_pred HHHHHHHHHHHHHHhcHHHH
Confidence 34699999999999997644
No 24
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=20.02 E-value=1.1e+02 Score=30.62 Aligned_cols=46 Identities=7% Similarity=0.146 Sum_probs=29.4
Q ss_pred HHHHHhhhHHHHhhhcccCCccccCCCCCchHHHHHHHHHHHHHHH
Q 022218 194 LSMMCGGDGIADVIGRRFGSMKIFYNEKKSWAGSISMFVFGFLVST 239 (301)
Q Consensus 194 i~~l~~GDg~AaiVG~~fGr~kl~~~~~KS~eGSla~fi~s~l~~~ 239 (301)
+..++++-+.+.++|+.+|.++..--++-.+.+....++.+.+.+.
T Consensus 291 ~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~ 336 (455)
T COG0534 291 MPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIAL 336 (455)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446789999999999999988752233344554444444444443
Done!