Query 022218
Match_columns 301
No_of_seqs 194 out of 1136
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8f_C Cytochrome C oxidase po 6.6 3.9E+02 0.013 16.5 2.6 20 165-184 4-23 (34)
2 1jdm_A Sarcolipin; helix, memb 5.1 3.1E+02 0.011 16.4 1.5 18 281-298 8-25 (31)
3 3mkt_A Multi antimicrobial ext 5.0 9.2E+02 0.031 21.4 5.5 24 194-217 288-311 (460)
4 4aps_A DI-OR tripeptide H+ sym 4.6 1.7E+03 0.057 19.6 7.6 18 189-206 110-127 (491)
5 2qjy_B Cytochrome C1; cytochro 3.9 6.6E+02 0.023 22.5 3.4 48 57-104 200-262 (269)
6 1jh4_B PAIP1, polyadenylate-bi 2.8 5.8E+02 0.02 14.8 1.2 14 4-18 5-18 (26)
7 2oqj_C Peptide 2G12.1 (ACPPSHV 2.7 3.6E+02 0.012 15.3 0.2 6 13-18 2-7 (26)
8 2glz_A Similar to formylmethan 2.5 6.6E+02 0.023 19.9 1.7 21 197-217 55-75 (153)
9 2lkw_A Membrane fusion protein 2.5 6E+02 0.02 14.4 1.0 12 6-17 6-17 (26)
10 3mly_P HIV-1 GP120 third varia 2.5 1.6E+02 0.0054 15.9 -1.5 10 99-108 3-12 (23)
No 1
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=6.60 E-value=3.9e+02 Score=16.51 Aligned_cols=20 Identities=45% Similarity=0.855 Sum_probs=14.3
Q ss_pred ccchHHHHHHHHHHHHHHhc
Q 022218 165 LLRGPLYYVLMLILSALVFW 184 (301)
Q Consensus 165 ll~G~lyy~l~~~l~~~lf~ 184 (301)
.++|++..........+++|
T Consensus 4 ~l~GTl~~V~ilg~~I~i~W 23 (34)
T 3s8f_C 4 KPKGALAVILVLTLTILVFW 23 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CccceehHHHHHHHHHHHHH
Confidence 36899887776666666666
No 2
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=5.13 E-value=3.1e+02 Score=16.44 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.0
Q ss_pred CCcccchHHHHHHHHHHH
Q 022218 281 VDDNISVPLASMVAAYLS 298 (301)
Q Consensus 281 ~dDNLtIPl~~~ll~~L~ 298 (301)
.-=|+|+-+...++.|++
T Consensus 8 Lf~NFt~vLI~vlLi~ll 25 (31)
T 1jdm_A 8 LFLNFTIVLITVILMWLL 25 (31)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445888888888888876
No 3
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=5.02 E-value=9.2e+02 Score=21.37 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=18.6
Q ss_pred HHHHHhhhHHHHhhhcccCCcccc
Q 022218 194 LSMMCGGDGIADVIGRRFGSMKIF 217 (301)
Q Consensus 194 i~~l~~GDg~AaiVG~~fGr~kl~ 217 (301)
+...+++.+....+|+.+|+++..
T Consensus 288 ~~~~~~~~a~~p~i~~~~g~~~~~ 311 (460)
T 3mkt_A 288 MFPMSIGAAVSIRVGHKLGEQDTK 311 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344567888999999999987664
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=4.57 E-value=1.7e+03 Score=19.64 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhHHHHh
Q 022218 189 VGVISLSMMCGGDGIADV 206 (301)
Q Consensus 189 iai~~i~~l~~GDg~Aai 206 (301)
..+++.++.++|.|...-
T Consensus 110 ~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 110 ALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 344555666666665443
No 5
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=3.93 E-value=6.6e+02 Score=22.53 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=24.5
Q ss_pred hhccccchhhhhHHHHH---------------HHHHHHHHHHHHHHHHhhhccccccchhhhh
Q 022218 57 AAARVGHLLHDAGATAA---------------VLVGAYGLVLSFDNLSQRKLIQQSLSRKLVH 104 (301)
Q Consensus 57 ~~~~~~~~~~d~~a~~~---------------~~~~~~~~v~~~~~l~~r~~l~~el~RKlvH 104 (301)
++.+.+...+|+.+++. ...++++++.++.++.||..=+.-=.||++.
T Consensus 200 tpat~~q~a~DVvaFL~waaEP~~~~Rk~lG~~Vl~fL~il~~l~y~~kr~~W~~vk~~~~~~ 262 (269)
T 2qjy_B 200 HDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVLLYLTNKRLWAGVKGKKKTN 262 (269)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccceec
Confidence 44566777889888763 2234555555666666664333333677764
No 6
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=2.83 E-value=5.8e+02 Score=14.78 Aligned_cols=14 Identities=14% Similarity=-0.009 Sum_probs=10.0
Q ss_pred cccccccCCCCCCCc
Q 022218 4 SLSLLSRHPISGRHV 18 (301)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (301)
++|..+|.|.|. |+
T Consensus 5 ~LS~~ApeF~Ps-gy 18 (26)
T 1jh4_B 5 KLSVNAPEFYPS-GY 18 (26)
T ss_dssp CSSCCCSCCCCT-TC
T ss_pred ccCcCCceeccC-cc
Confidence 577788888774 44
No 7
>2oqj_C Peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK); immunoglobulin fold, immune system; 2.80A {Homo sapiens}
Probab=2.67 E-value=3.6e+02 Score=15.29 Aligned_cols=6 Identities=33% Similarity=0.385 Sum_probs=2.9
Q ss_pred CCCCCc
Q 022218 13 ISGRHV 18 (301)
Q Consensus 13 ~~~~~~ 18 (301)
|||.|+
T Consensus 2 cppshv 7 (26)
T 2oqj_C 2 CPPSHV 7 (26)
T ss_pred cCchhe
Confidence 455554
No 8
>2glz_A Similar to formylmethanofuran dehydrogenase subun; structural genomics, joint center for structural genomics; HET: MSE; 1.45A {Desulfitobacterium hafniense} SCOP: d.81.3.1
Probab=2.52 E-value=6.6e+02 Score=19.95 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=17.0
Q ss_pred HHhhhHHHHhhhcccCCcccc
Q 022218 197 MCGGDGIADVIGRRFGSMKIF 217 (301)
Q Consensus 197 l~~GDg~AaiVG~~fGr~kl~ 217 (301)
-|.-||+-.+-|-.+||+.+.
T Consensus 55 ~C~~Daiq~ltGct~Gkg~L~ 75 (153)
T 2glz_A 55 SCALDAIQVLNKATIGRHALI 75 (153)
T ss_dssp STTHHHHHHHTCCCTTTTCEE
T ss_pred CcccCceeeccCcEecCCCeE
Confidence 456799999999889987663
No 9
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=2.49 E-value=6e+02 Score=14.36 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=5.4
Q ss_pred cccccCCCCCCC
Q 022218 6 SLLSRHPISGRH 17 (301)
Q Consensus 6 ~~~~~~~~~~~~ 17 (301)
|...|+-+|+..
T Consensus 6 sivqppapppna 17 (26)
T 2lkw_A 6 SIVQPPAPPPNA 17 (26)
T ss_pred ccccCCCcCCCe
Confidence 444444444443
No 10
>3mly_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.70A {Human immunodeficiency virus 1} PDB: 2b1h_P 3mlu_P 3ujj_P
Probab=2.47 E-value=1.6e+02 Score=15.89 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred chhhhhHhHH
Q 022218 99 SRKLVHILSG 108 (301)
Q Consensus 99 ~RKlvHi~~G 108 (301)
.||-+|++-|
T Consensus 3 trk~i~iGpG 12 (23)
T 3mly_P 3 TKKSIKIRPR 12 (26)
T ss_pred eEEEEeecCC
Done!