Query 022218
Match_columns 301
No_of_seqs 194 out of 1136
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 15:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022218.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022218hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56d_ f.23.8.1 (D:) Bacteria 11.1 62 0.0045 19.6 1.9 30 209-239 2-31 (42)
2 d1xmec1 f.23.9.1 (C:2-34) Bact 6.6 2.3E+02 0.016 15.7 4.2 19 166-184 4-22 (33)
3 d1pv7a_ f.38.1.2 (A:) Lactose 6.0 5.3E+02 0.039 19.3 7.9 18 191-208 316-333 (417)
4 d1qled_ f.23.8.1 (D:) Bacteria 4.8 3.6E+02 0.026 16.0 3.3 20 220-239 13-32 (43)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 4.3 8.2E+02 0.06 20.4 7.0 41 78-118 290-330 (383)
6 d1gjsa_ a.8.1.2 (A:) IgG bindi 3.9 1.2E+02 0.0085 19.8 0.4 12 218-229 44-55 (65)
7 d2r7ga2 a.74.1.3 (A:644-785) R 3.6 3.2E+02 0.023 20.2 2.9 57 76-133 11-68 (142)
8 d1v54l_ f.23.6.1 (L:) Mitochon 3.5 4E+02 0.029 15.9 2.8 17 189-205 18-34 (46)
9 d1lpba2 g.3.10.1 (A:45-90) (Pr 3.4 2.2E+02 0.016 17.1 1.4 12 218-229 25-36 (46)
10 d2gvia1 d.81.3.1 (A:1-168) Unc 2.8 3.3E+02 0.024 20.3 2.3 20 197-216 60-79 (168)
No 1
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.09 E-value=62 Score=19.57 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=17.4
Q ss_pred cccCCccccCCCCCchHHHHHHHHHHHHHHH
Q 022218 209 RRFGSMKIFYNEKKSWAGSISMFVFGFLVST 239 (301)
Q Consensus 209 ~~fGr~kl~~~~~KS~eGSla~fi~s~l~~~ 239 (301)
.+-|...+. ..+||.+|-+-+-.=..++++
T Consensus 2 HkHG~MDi~-vQEKTF~gFik~~t~~~i~~i 31 (42)
T d1m56d_ 2 HVAGSMDIT-QQEKTFAGFVRMVTWAAVVIV 31 (42)
T ss_dssp CCTTCSCCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 257999998887544444443
No 2
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=6.62 E-value=2.3e+02 Score=15.66 Aligned_cols=19 Identities=47% Similarity=0.936 Sum_probs=13.1
Q ss_pred cchHHHHHHHHHHHHHHhc
Q 022218 166 LRGPLYYVLMLILSALVFW 184 (301)
Q Consensus 166 l~G~lyy~l~~~l~~~lf~ 184 (301)
..|.+-....+.+..+.||
T Consensus 4 p~gal~vi~il~l~ilvfw 22 (33)
T d1xmec1 4 PKGALAVILVLTLTILVFW 22 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 3577766666667777787
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.02 E-value=5.3e+02 Score=19.35 Aligned_cols=18 Identities=17% Similarity=-0.228 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhHHHHhhh
Q 022218 191 VISLSMMCGGDGIADVIG 208 (301)
Q Consensus 191 i~~i~~l~~GDg~AaiVG 208 (301)
++.....+++.++.....
T Consensus 316 ~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 316 VILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344455566666654443
No 4
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=4.80 E-value=3.6e+02 Score=16.02 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=12.9
Q ss_pred CCCchHHHHHHHHHHHHHHH
Q 022218 220 EKKSWAGSISMFVFGFLVST 239 (301)
Q Consensus 220 ~~KS~eGSla~fi~s~l~~~ 239 (301)
..||.+|-+-+-.=..++++
T Consensus 13 QEkTF~gFi~~~t~~~i~~i 32 (43)
T d1qled_ 13 QQATFAGFIKGATWVSILSI 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57999998877544444433
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=4.25 E-value=8.2e+02 Score=20.35 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhhccccccchhhhhHhHHHHHHHHhhhc
Q 022218 78 AYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIF 118 (301)
Q Consensus 78 ~~~~v~~~~~l~~r~~l~~el~RKlvHi~~Glv~~l~~plf 118 (301)
........+++.+|.++|+.+.==-+|-..|++-.++-++|
T Consensus 290 g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 290 GLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHh
Confidence 33444556667777778888888889998887766665555
No 6
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=3.90 E-value=1.2e+02 Score=19.81 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=9.4
Q ss_pred CCCCCchHHHHH
Q 022218 218 YNEKKSWAGSIS 229 (301)
Q Consensus 218 ~~~~KS~eGSla 229 (301)
.|+-||+||--+
T Consensus 44 IN~AKTVEGV~a 55 (65)
T d1gjsa_ 44 INNAKTVEGVKA 55 (65)
T ss_dssp HHTCCSHHHHHH
T ss_pred HhccchHHHHHH
Confidence 578999999544
No 7
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.62 E-value=3.2e+02 Score=20.25 Aligned_cols=57 Identities=5% Similarity=0.000 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhhccccccchhhhhHhHHHHHHHHhhhccC-chHHHHHHHHHHH
Q 022218 76 VGAYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIFST-STEARYFAALVPL 133 (301)
Q Consensus 76 ~~~~~~v~~~~~l~~r~~l~~el~RKlvHi~~Glv~~l~~plf~~-~~~a~~la~l~pl 133 (301)
.+-++.+++-+.-.+-...+.++.||++|+.==.+.= -.-++.+ ...-..+++++.+
T Consensus 11 vy~La~~Rl~~LC~~L~~~~~~l~~~Iw~~fe~~l~~-~t~L~~dRHLDQiilCaiY~i 68 (142)
T d2r7ga2 11 VYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQN-EYELMRDRHLDQIMMCSMYGI 68 (142)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH-CGGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHH-hHHHHhccchhHHHHHHHHHH
Confidence 3456777877755544445678999999984322211 1122323 3344556776643
No 8
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.54 E-value=4e+02 Score=15.93 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhHHHH
Q 022218 189 VGVISLSMMCGGDGIAD 205 (301)
Q Consensus 189 iai~~i~~l~~GDg~Aa 205 (301)
+-+.+++++-+|-|+|+
T Consensus 18 ~rLla~m~~~fGsgfa~ 34 (46)
T d1v54l_ 18 WRLLAMMTLFFGSGFAA 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccc
Confidence 45566666667777765
No 9
>d1lpba2 g.3.10.1 (A:45-90) (Pro)colipase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.40 E-value=2.2e+02 Score=17.06 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=9.3
Q ss_pred CCCCCchHHHHH
Q 022218 218 YNEKKSWAGSIS 229 (301)
Q Consensus 218 ~~~~KS~eGSla 229 (301)
-..+||+.||+.
T Consensus 25 Ce~D~sivGsIt 36 (46)
T d1lpba2 25 CEGDKSLVGSIT 36 (46)
T ss_dssp EESCCCHHHHHH
T ss_pred eccCceEEEEEe
Confidence 346899999875
No 10
>d2gvia1 d.81.3.1 (A:1-168) Uncharacterized protein Ta1109 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=2.85 E-value=3.3e+02 Score=20.34 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=15.5
Q ss_pred HHhhhHHHHhhhcccCCccc
Q 022218 197 MCGGDGIADVIGRRFGSMKI 216 (301)
Q Consensus 197 l~~GDg~AaiVG~~fGr~kl 216 (301)
-|.-|++-.+-|-.+||+.+
T Consensus 60 ~C~~Davq~ltGcT~Gkg~L 79 (168)
T d2gvia1 60 GCFNDGAQAATGCTYGKGLF 79 (168)
T ss_dssp THHHHHHHHHHSCCTTTTCE
T ss_pred ccHHhHHHHHhcccccCCce
Confidence 45578888888888888765
Done!