Query 022219
Match_columns 300
No_of_seqs 145 out of 227
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 15:54:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xjv_A Protection of telomeres 100.0 1.7E-63 5.9E-68 459.4 27.7 270 6-300 2-285 (294)
2 1jb7_A Telomere-binding protei 100.0 2E-54 6.7E-59 421.7 18.3 251 3-291 31-317 (495)
3 1qzg_A Protection of telomeres 100.0 4.9E-35 1.7E-39 249.2 17.6 141 6-148 25-174 (187)
4 4hik_A Protection of telomeres 100.0 1.9E-32 6.5E-37 224.7 13.0 123 154-298 2-133 (143)
5 2k50_A Replication factor A re 98.7 1.2E-07 4E-12 74.6 9.6 93 5-103 2-99 (115)
6 2k75_A Uncharacterized protein 98.5 5.8E-07 2E-11 69.8 10.2 88 8-108 1-91 (106)
7 1jmc_A Protein (replication pr 98.4 8.5E-06 2.9E-10 72.1 15.6 218 8-297 6-234 (246)
8 4gop_C Putative uncharacterize 98.4 1.6E-06 5.4E-11 83.6 11.1 88 6-95 117-212 (444)
9 1jmc_A Protein (replication pr 98.4 1.6E-06 5.6E-11 76.7 10.3 92 5-101 121-218 (246)
10 1o7i_A SSB, SSO2364, single st 98.4 5.3E-06 1.8E-10 65.6 12.1 89 10-108 2-94 (119)
11 2k75_A Uncharacterized protein 98.0 8.9E-05 3E-09 57.3 12.4 96 159-295 4-100 (106)
12 2kbn_A Conserved protein; nucl 98.0 6.1E-05 2.1E-09 58.5 10.8 88 10-108 5-92 (109)
13 2kbn_A Conserved protein; nucl 97.9 0.00026 9E-09 54.9 13.0 94 159-296 6-102 (109)
14 3dm3_A Replication factor A; p 97.9 6E-05 2.1E-09 58.2 9.1 84 9-101 4-92 (105)
15 4gop_C Putative uncharacterize 97.8 0.00037 1.2E-08 67.0 15.5 211 10-287 3-224 (444)
16 1wjj_A Hypothetical protein F2 97.8 0.00045 1.5E-08 56.3 13.7 55 238-296 74-128 (145)
17 3e0e_A Replication protein A; 97.8 0.00016 5.6E-09 54.9 9.4 82 11-101 3-88 (97)
18 2k50_A Replication factor A re 97.7 0.00024 8E-09 55.4 10.1 94 156-292 6-109 (115)
19 1o7i_A SSB, SSO2364, single st 97.6 0.00075 2.6E-08 53.0 10.8 88 159-291 3-99 (119)
20 1wjj_A Hypothetical protein F2 97.5 0.00025 8.7E-09 57.8 7.8 89 6-102 12-113 (145)
21 3dm3_A Replication factor A; p 96.9 0.012 3.9E-07 45.2 11.1 98 156-290 4-102 (105)
22 3e0e_A Replication protein A; 96.6 0.02 6.8E-07 43.1 9.9 92 159-286 3-94 (97)
23 1ynx_A Replication factor-A pr 96.3 0.03 1E-06 43.4 9.9 103 156-292 3-113 (114)
24 1xjv_A Protection of telomeres 95.4 0.2 6.9E-06 45.1 12.5 93 156-289 5-102 (294)
25 1qzg_A Protection of telomeres 95.0 0.43 1.5E-05 40.2 12.5 91 161-287 36-133 (187)
26 1ynx_A Replication factor-A pr 94.9 0.0082 2.8E-07 46.6 1.4 82 9-95 3-88 (114)
27 1miu_A BRCA2, breast cancer ty 94.8 0.35 1.2E-05 48.7 13.1 168 44-286 511-688 (738)
28 4gop_B Putative uncharacterize 94.1 0.46 1.6E-05 37.6 10.3 69 22-101 37-109 (136)
29 3ebe_A Protein MCM10 homolog; 93.8 0.06 2E-06 46.0 4.7 82 7-90 35-123 (200)
30 3kdf_D Replication protein A 3 93.8 0.71 2.4E-05 36.3 10.7 69 22-100 32-103 (132)
31 3u4z_A Telomerase-associated p 93.5 0.81 2.8E-05 32.9 9.4 86 13-107 4-90 (109)
32 1jb7_A Telomere-binding protei 93.0 0.83 2.9E-05 44.2 11.7 106 156-292 37-153 (495)
33 4hik_A Protection of telomeres 92.1 0.27 9.1E-06 39.7 5.9 77 9-94 4-101 (143)
34 2pi2_A Replication protein A 3 91.7 1.5 5E-05 38.9 11.0 82 10-101 48-144 (270)
35 3u58_A Tetrahymena TEB1 AB; te 89.9 2.6 8.7E-05 33.6 9.5 85 11-103 120-205 (213)
36 4gop_B Putative uncharacterize 84.5 10 0.00035 29.6 10.3 83 166-294 35-120 (136)
37 3kdf_D Replication protein A 3 81.1 17 0.00058 28.1 11.1 83 168-295 32-116 (132)
38 2pi2_A Replication protein A 3 76.1 27 0.00094 30.5 11.3 83 168-295 72-156 (270)
39 3kf6_A Protein STN1; OB fold, 70.1 6.7 0.00023 31.9 5.3 71 22-101 48-121 (159)
40 3r8s_P 50S ribosomal protein L 67.8 13 0.00046 28.4 6.1 41 70-111 14-62 (114)
41 1miu_A BRCA2, breast cancer ty 65.0 17 0.00056 36.8 7.8 72 11-93 597-672 (738)
42 2ftc_K 39S ribosomal protein L 62.6 15 0.0005 27.4 5.3 41 72-113 1-48 (98)
43 3f2b_A DNA-directed DNA polyme 62.3 12 0.00041 39.4 6.5 84 9-98 6-93 (1041)
44 3f2b_A DNA-directed DNA polyme 61.2 22 0.00076 37.4 8.3 40 159-198 8-51 (1041)
45 3v2d_T 50S ribosomal protein L 57.1 25 0.00086 28.0 6.1 40 70-110 17-64 (146)
46 2hpi_A DNA polymerase III alph 53.6 10 0.00034 40.7 4.2 76 11-91 1027-1107(1220)
47 1kxl_A Cell division control p 42.1 90 0.0031 26.1 7.4 110 159-285 13-145 (199)
48 2lcs_A NAP1-binding protein 2; 39.5 46 0.0016 22.6 4.6 35 254-291 23-57 (73)
49 1yn8_A NBP2, NAP1-binding prot 36.2 48 0.0016 21.1 4.1 33 254-289 19-51 (59)
50 3afp_A Single-stranded DNA-bin 35.9 45 0.0015 27.0 4.7 73 22-94 5-90 (168)
51 2zjr_M 50S ribosomal protein L 32.0 37 0.0013 27.7 3.4 41 70-111 22-70 (166)
52 2ct3_A Vinexin; SH3 domian, st 31.2 68 0.0023 21.1 4.4 35 254-291 25-59 (70)
53 2lj0_A Sorbin and SH3 domain-c 30.7 57 0.002 21.8 3.9 36 254-292 24-59 (65)
54 1tg0_A BBC1 protein, myosin ta 30.5 77 0.0026 20.8 4.5 34 254-290 25-61 (68)
55 1j6q_A Cytochrome C maturation 28.4 2.1E+02 0.0072 22.3 8.4 69 9-85 11-88 (136)
56 3au7_A TIAS, putative uncharac 28.4 54 0.0018 30.6 4.4 68 11-87 276-345 (402)
57 2g6f_X RHO guanine nucleotide 27.6 81 0.0028 20.0 4.1 23 254-279 22-44 (59)
58 2ecz_A Sorbin and SH3 domain-c 27.4 78 0.0027 20.9 4.1 35 254-291 25-59 (70)
59 3u58_A Tetrahymena TEB1 AB; te 25.7 1E+02 0.0035 24.3 4.9 134 24-201 26-162 (213)
60 2o9s_A Ponsin; SH3 domain, sig 24.5 95 0.0032 20.3 4.1 34 254-290 24-57 (67)
61 1jo8_A ABP1P, actin binding pr 23.5 67 0.0023 20.3 3.1 33 254-289 18-50 (58)
62 1sr3_A APO-CCME; OB fold, beta 23.1 2.7E+02 0.0092 21.7 8.1 66 10-84 8-82 (136)
63 2ed1_A 130 kDa phosphatidylino 22.5 82 0.0028 21.3 3.5 25 254-281 28-52 (76)
64 2xmf_A Myosin 1E SH3; motor pr 21.6 1.3E+02 0.0045 19.0 4.3 23 254-279 23-45 (60)
65 1qvc_A Single stranded DNA bin 20.4 1.6E+02 0.0055 22.9 5.3 71 23-94 7-90 (145)
66 3cqt_A P59-FYN, proto-oncogene 20.4 67 0.0023 22.1 2.7 33 254-289 23-55 (79)
67 2qcp_X Cation efflux system pr 20.2 1.8E+02 0.0061 20.3 5.0 56 22-86 6-64 (80)
68 2kgt_A Tyrosine-protein kinase 20.1 1.7E+02 0.0058 19.2 4.8 34 254-291 28-65 (72)
No 1
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=100.00 E-value=1.7e-63 Score=459.41 Aligned_cols=270 Identities=23% Similarity=0.346 Sum_probs=232.6
Q ss_pred CCcceeehhhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 022219 6 NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (300)
Q Consensus 6 ~~y~y~~l~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (300)
++|+|++|+++. .++.|||||||+|+++|++|+|+||+|||+|+|+|.. ||+|+||++++++||.+.++||||+||
T Consensus 2 ~~y~y~~l~~l~--~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~--gl~v~iF~~~~~~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 2 TNYIYTPLNQLK--GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV--KLTCLLFSGNYEALPIIYKNGDIVRFH 77 (294)
T ss_dssp CCCCCCCGGGCC--SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC--EEEEEEEESSGGGSCCCCSTTCEEEEE
T ss_pred CcceEEEHHHhh--CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCC--CEEEEEECCChHHCCCCCCCCCEEEEE
Confidence 689999999885 5889999999999999999999999999999999984 699999999999999998899999999
Q ss_pred eEEEEEEcCeEEEEeecCceEEEEEeCCCCCCccccccCCCCcCCCHHHHHHHHHHHHhhhcCccccCCccccccccccc
Q 022219 86 NVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDIS 165 (300)
Q Consensus 86 r~kv~~~~g~~~~~~~~~~ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~~~~~L~di~ 165 (300)
|++|+.|+|+++++++.++ +|++|+|..+.++.|++.+. +|+++++|++++..||+|+.++.... .+| ++|+||+
T Consensus 78 ~vki~~~~g~~~~v~~~~~-s~~~f~g~~~~~~~p~~~~~-~~~~~~~e~~~~~~Lr~w~~~~~~~~--~~~-~~L~di~ 152 (294)
T 1xjv_A 78 RLKIQVYKKETQGITSSGF-ASLTFEGTLGAPIIPRTSSK-YFNFTTEDHKMVEALRVWASTHMSPS--WTL-LKLCDVQ 152 (294)
T ss_dssp EEEEEEETTEEEEEEEEEE-EEEEECCSTTCCCCCBCSCS-SCCCCHHHHHHHHHHHHHHHHHCC-----CC-CCGGGCC
T ss_pred EEEEEEECCeEEEEccCCe-EEEEECCCCCCCcCCcccCC-CcCCCHHHHHHHHHHHHHHHhccCCC--Cce-eEHHHcc
Confidence 9999999999999998774 45589999888889988776 59999999999999999998876543 358 8999999
Q ss_pred CCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCC-CChhhhhcCCCcc-cEEEEEe
Q 022219 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSP-LDLETLRNFFPVG-TVLRVST 243 (300)
Q Consensus 166 ~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~G-~~l~V~~ 243 (300)
+++||||+||||+++ ..++++++|||||||+||+++++...++++. +++. .++. .| .+++|++
T Consensus 153 ~~~f~DLv~qVv~v~-~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~-------~gd~~~~~~-------~~~lt~~V~~ 217 (294)
T 1xjv_A 153 PMQYFDLTCQLLGKA-EVDGASFLLKVWDGTRTPFPSWRVLIQDLVL-------EGDLSHIHR-------LQNLTIDILV 217 (294)
T ss_dssp SSCEEEEEEEEEEEE-ECSSSEEEEEEECSSCCSSCBCCCCCCSSCC-------EECHHHHHH-------HGGGSEEEEE
T ss_pred cCCeeeEEEEEEEEE-ecCCCeEEEEEECCCCCCCCccccccccccc-------cCccccccc-------ccCeeEEEEE
Confidence 999999999999999 4478999999999999999988886654321 2211 1111 23 3789998
Q ss_pred cCchhhhhhcCCCCCcEEEEeccEEEee--------CcEEEEEEeeCC----ceEEcCCCCcccccccC
Q 022219 244 DRSYENFGRYFTATGKWVRIRNMSCQVS--------SGMWHGLLQSSS----KIRLFSDNDNVVWDYMR 300 (300)
Q Consensus 244 ~~~~~~~~~~~lk~G~wv~l~Nv~~k~~--------~g~leg~l~~~s----k~~~l~~~d~~v~~~~~ 300 (300)
|+.|+.+++ .+|+||||+|+|||+|++ +|.|||.||+++ ||++|+++|+.|.+++|
T Consensus 218 ~d~h~~~~~-~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~ 285 (294)
T 1xjv_A 218 YDNHVHVAR-SLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKK 285 (294)
T ss_dssp ETTHHHHHH-HCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHH
T ss_pred EcchhHHHh-cCCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHH
Confidence 888887654 799999999999999997 789999999995 59999999999987653
No 2
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=100.00 E-value=2e-54 Score=421.71 Aligned_cols=251 Identities=21% Similarity=0.290 Sum_probs=215.4
Q ss_pred CCCCCcceeehhhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCC-----CCCe-----EEEEecCCCCCC
Q 022219 3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQ-----SPEL-----LVNIFTSSIDQL 72 (300)
Q Consensus 3 ~~~~~y~y~~l~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~-----~~gl-----~v~iF~~~~~~L 72 (300)
+...+|+|++|++|....++.|||||||+|+++|++|+|+||+|+|+|+|+|+. +.|| +|+||++++++|
T Consensus 31 ~~~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L 110 (495)
T 1jb7_A 31 DKGHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL 110 (495)
T ss_dssp -----CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS
T ss_pred cccCCCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC
Confidence 457889999999998778999999999999999999999999999999999998 2489 999999999999
Q ss_pred CCCCCCCCEEEEeeEEEEEEcCeEEEEeecCc-eEEEEEeCCC------------CCCccccccCCCCcCCCHHHHHHHH
Q 022219 73 PRVLSPRDLILLKNVMIKKHQAELSAVFYKDS-SSFALFDGNS------------GSNLLPYQSSPQRFEITEAEERRIN 139 (300)
Q Consensus 73 P~v~~~GDII~l~r~kv~~~~g~~~~~~~~~~-ss~~vf~~~~------------~~~~~P~~~s~~~~~~~~~e~~~v~ 139 (300)
|.|.++||||+|||++|+.|+|+++++++.++ |+||||++.. +.++.||+.++.+|+++++|++++.
T Consensus 111 P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~ 190 (495)
T 1jb7_A 111 PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQ 190 (495)
T ss_dssp CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHH
T ss_pred CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHH
Confidence 99988999999999999999999999999776 8999999987 6778999988556999999999999
Q ss_pred HHHHhhhcCccc---cCCcccccccc-cccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCC
Q 022219 140 VLRQWCVGFEFS---SGSNDYLLSLK-DISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPL 215 (300)
Q Consensus 140 ~Lr~W~~~~~~~---~~~~~~~~~L~-di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~ 215 (300)
.||+|+.++... .++++| .+|+ ||++++||||+||||+++ ..++++++|||||||++|+++
T Consensus 191 ~LR~W~~~~~~~~~~~~~~~f-~~L~~di~~~~f~DLv~qVv~~~-~~d~~~~~L~VwDgT~~~~~~------------- 255 (495)
T 1jb7_A 191 NLRKWANQYFSSYSVISSDMY-TALNKAQAQKGDFDVVAKILQVH-ELDEYTNELKLKDASGQVFYT------------- 255 (495)
T ss_dssp HHHHHHHHHHHHSCSSCGGGS-CCGGGGGGCSSCEEEEEEEEEEE-ECSSSEEEEEEEETTCCEEEE-------------
T ss_pred HHHHHHHhcccccccccccch-hhhhhhhccCCceeEEEEEeEEe-ccCCCeEEEEEEeCCCCCcce-------------
Confidence 999999887652 356778 8999 999999999999999999 547899999999999998864
Q ss_pred CCcccCCCCChhhhhcCCCc--ccEEEEEecCchhhhh-hcCCCCCcEEEEeccEEEeeCcEEEEEEeeCCceE------
Q 022219 216 PLHIESSPLDLETLRNFFPV--GTVLRVSTDRSYENFG-RYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR------ 286 (300)
Q Consensus 216 ~~~~~~~~~~~~~~~~~p~~--G~~l~V~~~~~~~~~~-~~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~------ 286 (300)
.+.++++|.+ |++++|..++..+... .+.++.|+| +|+. ++..+||++
T Consensus 256 ----------~~~~~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w---~ni~----------~~~~~sk~~ke~~~~ 312 (495)
T 1jb7_A 256 ----------LSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHY---SNII----------TFIQSSKLAKELRAK 312 (495)
T ss_dssp ----------EEETTTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEE---EEEE----------EECTTCHHHHHHHHH
T ss_pred ----------eeccccCCceeeEEEEEEecCccchhhhhhhhhccccc---ccee----------EEcccchhhhhhhhc
Confidence 2346889989 9999998764443322 566899999 5776 455578888
Q ss_pred EcCCC
Q 022219 287 LFSDN 291 (300)
Q Consensus 287 ~l~~~ 291 (300)
+|+++
T Consensus 313 ~l~~~ 317 (495)
T 1jb7_A 313 IQDDH 317 (495)
T ss_dssp SCCCC
T ss_pred ccchh
Confidence 88777
No 3
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=100.00 E-value=4.9e-35 Score=249.22 Aligned_cols=141 Identities=21% Similarity=0.293 Sum_probs=123.2
Q ss_pred CCcceeehhhhhh--ccCCEEEEEEEEEecCCceec-CCC-ceEEEEEEEeCCCC--CCCeEEEEecCCCCCCCCCCCCC
Q 022219 6 NQGGIVRIKELAM--HVKHKVNLLGVVLEFSIPRKS-QGT-DYVCVLKIVDDSQQ--SPELLVNIFTSSIDQLPRVLSPR 79 (300)
Q Consensus 6 ~~y~y~~l~~~~~--~~~~~vnviGVVvd~~~P~~t-rG~-D~~~tl~I~D~S~~--~~gl~v~iF~~~~~~LP~v~~~G 79 (300)
..++|++++++++ ..++.||+||||+|+++|++| +|+ ||+|+|+|+|+|+. +.||+|+||++++++||.|.++|
T Consensus 25 ~~~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~G 104 (187)
T 1qzg_A 25 GELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVG 104 (187)
T ss_dssp TTEEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTT
T ss_pred cceeEEEHHHHHhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCC
Confidence 4689999999986 457889999999999999999 999 99999999999965 56999999999999999999999
Q ss_pred CEEEEeeEEEEEEcCeEEEEeecCceEEEEEeCCCCCC---ccccccCCCCcCCCHHHHHHHHHHHHhhhcC
Q 022219 80 DLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSN---LLPYQSSPQRFEITEAEERRINVLRQWCVGF 148 (300)
Q Consensus 80 DII~l~r~kv~~~~g~~~~~~~~~~ss~~vf~~~~~~~---~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~ 148 (300)
|||+|||+|||.|+|+++++++++ ++|++|++..+.. ..|+.+++ ++.++++|++|+..|++||..+
T Consensus 105 DIIlL~rvkiq~~~g~~~~v~~~~-~s~a~f~~~~~~~~~~~~~~~~p~-~~~~~~~E~~ya~~L~~~w~~~ 174 (187)
T 1qzg_A 105 QPLLLHQITLRSYRDRTQGLSKDQ-FRYALWPDFSSNSKDTLCPQPMPR-LMKTGDKEEQFALLLNKIWDEQ 174 (187)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEE-EEEEECCCTTCSCSCCSCCCCSTT-BCCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEEECCeEEEEEcCc-eeEEEEeccCCCCCCCCCCccCcc-CCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999977 4799999865433 33333344 4899999999999999887654
No 4
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=99.98 E-value=1.9e-32 Score=224.70 Aligned_cols=123 Identities=18% Similarity=0.288 Sum_probs=103.5
Q ss_pred CcccccccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCC
Q 022219 154 SNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFF 233 (300)
Q Consensus 154 ~~~~~~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 233 (300)
++|| ++|+||++++||||+||||+++++ + ++++|||||||+||.++.+....+ + ..||
T Consensus 2 ~~kf-~llkdv~~~~F~Dl~~qVv~~~~~-~-~~~~LyVTDYT~N~~~~~~~~~~~-----------~--------~~W~ 59 (143)
T 4hik_A 2 SDSF-SLLSQITPHQRCSFYAQVIKTWYS-D-KNFTLYVTDYTENELFFPMSPYTS-----------S--------SRWR 59 (143)
T ss_dssp --CC-CCGGGCCSSCEEEEEEEEEEEEEC-S-SCEEEEEECSCCCTTSCCBCTTCT-----------T--------CSCC
T ss_pred Cchh-hhHHhCCCCCeEEEEEEEEEEEcC-C-CeEEEEEecCCCCCcccccccCCC-----------C--------cccc
Confidence 3579 999999999999999999999954 4 999999999999999764432211 0 2466
Q ss_pred -Cccc-EEEEEecCchhhhhhcCCCCCcEEEEeccEEEee-CcEEEEEEeeCC------ceEEcCCCCcccccc
Q 022219 234 -PVGT-VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-SGMWHGLLQSSS------KIRLFSDNDNVVWDY 298 (300)
Q Consensus 234 -~~G~-~l~V~~~~~~~~~~~~~lk~G~wv~l~Nv~~k~~-~g~leg~l~~~s------k~~~l~~~d~~v~~~ 298 (300)
|+|. +|||++|++|+.++++++|+|+||+|+|||+|++ +|.|||+||+++ .|+.|+.+|+-+++.
T Consensus 60 Gp~G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~l 133 (143)
T 4hik_A 60 GPFGRFSIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEI 133 (143)
T ss_dssp CCCBSCCEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHH
T ss_pred CCCCcEEEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHH
Confidence 6675 9999999999999999999999999999999997 799999999998 588898888777654
No 5
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.66 E-value=1.2e-07 Score=74.56 Aligned_cols=93 Identities=24% Similarity=0.343 Sum_probs=77.2
Q ss_pred CCCcceeehhhhhhccCCEEEEEEEEEecCCce--ecC-CC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 022219 5 RNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPR--KSQ-GT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRD 80 (300)
Q Consensus 5 ~~~y~y~~l~~~~~~~~~~vnviGVVvd~~~P~--~tr-G~-D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GD 80 (300)
..+|.+++|+++. .|..++++|+|++.+.++ .++ |+ .-+..++|.|.|- .|.+.+|.+..+.+..+ ..||
T Consensus 2 ~~~~~~~~I~~L~--~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG---~I~~t~w~~~~~~~~~l-~~G~ 75 (115)
T 2k50_A 2 KPEHRMDTISKLE--EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG---ELRAVFWTENIKLLKKF-REGD 75 (115)
T ss_dssp CCTTCCCCTTTCC--TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE---EEEEEEETTGGGGGGTC-CTTS
T ss_pred ccccceEEHHHCC--CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC---eEEEEEeCchhhhhhcC-CCCC
Confidence 4678899999997 788999999999998776 454 43 5789999999975 39999998765666667 7999
Q ss_pred EEEEeeEEEEE-EcCeEEEEeecC
Q 022219 81 LILLKNVMIKK-HQAELSAVFYKD 103 (300)
Q Consensus 81 II~l~r~kv~~-~~g~~~~~~~~~ 103 (300)
+|++.+..++. |+|++++.....
T Consensus 76 vv~i~g~~v~~~f~g~~qL~~~~~ 99 (115)
T 2k50_A 76 VIRIKDVNIRGGFGGRKEAHLMPR 99 (115)
T ss_dssp EEEEEEEEECCCSSSSCEEEECTT
T ss_pred EEEEEeeEEccccCCeEEEEECCC
Confidence 99999999986 999999887643
No 6
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.53 E-value=5.8e-07 Score=69.81 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=71.7
Q ss_pred cceeehhhhhhccCCE-EEEEEEEEecCCceecC-CCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 022219 8 GGIVRIKELAMHVKHK-VNLLGVVLEFSIPRKSQ-GTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (300)
Q Consensus 8 y~y~~l~~~~~~~~~~-vnviGVVvd~~~P~~tr-G~D-~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l 84 (300)
|.++.|+|+. ++.. ||++|.|++...|+.++ |+. ..+++.|.|+|= .|.++++.+. + ..||+|+|
T Consensus 1 ~~~~kI~dl~--pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG---~I~~tlW~~~------l-~~Gdvv~i 68 (106)
T 2k75_A 1 SDLVKIRDVS--LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA---RIRISSFGKQ------L-QDSDVVRI 68 (106)
T ss_dssp CCBCCSTTCC--TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC---EEEEEEESSC------C-CTTEEEEE
T ss_pred CCcEEHHHcC--CCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC---eEEEEEEcCc------c-CCCCEEEE
Confidence 6788999997 4544 99999999999886554 543 588999999975 3999999864 5 79999999
Q ss_pred eeEEEEEEcCeEEEEeecCceEEE
Q 022219 85 KNVMIKKHQAELSAVFYKDSSSFA 108 (300)
Q Consensus 85 ~r~kv~~~~g~~~~~~~~~~ss~~ 108 (300)
++.++..|+|++++..++. +...
T Consensus 69 ~ng~v~~~~g~~~L~v~~~-~~I~ 91 (106)
T 2k75_A 69 DNARVAQFNGYLSLSVGDS-SRIE 91 (106)
T ss_dssp EEEEEEEETTEEEEEECTT-SEEE
T ss_pred EeeEEeEECCEEEEEECCc-EEEE
Confidence 9999999999999988743 4443
No 7
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.40 E-value=8.5e-06 Score=72.06 Aligned_cols=218 Identities=17% Similarity=0.212 Sum_probs=131.7
Q ss_pred cceeehhhhhhccCCEEEEEEEEEecCCcee---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEE
Q 022219 8 GGIVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLIL 83 (300)
Q Consensus 8 y~y~~l~~~~~~~~~~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~L-P~v~~~GDII~ 83 (300)
-.|++|++|... ....++.|-|+....++. .+|.--..++.|.|++- .|.+.+|.+..+.+ |.+ ++|+++.
T Consensus 6 ~~~~~I~~L~p~-~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~~~~~l-~~G~vy~ 80 (246)
T 1jmc_A 6 SKVVPIASLTPY-QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG---EIRATAFNEQVDKFFPLI-EVNKVYY 80 (246)
T ss_dssp -CBCCGGGCCTT-CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEEHHHHHHHGGGC-CTTCEEE
T ss_pred cceEEHHHCCCC-CCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC---eEEEEEChHHHHHhhhhc-ccCCEEE
Confidence 468899999633 236899999999877653 24555678899999876 39999998654444 456 7999999
Q ss_pred EeeEEEEEEcCeE-------EEEeecCceEEEEEeCCCCCCccccccCCCCcCCCHHHHHHHHHHHHhhhcCccccCCcc
Q 022219 84 LKNVMIKKHQAEL-------SAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSND 156 (300)
Q Consensus 84 l~r~kv~~~~g~~-------~~~~~~~~ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~ 156 (300)
|.+++++..++.. ...++.. +.....+.. .. .| ...|.|. +
T Consensus 81 i~~~~v~~~~~~y~~~~~~~ei~~~~~-T~I~~~~~~--~~-iP----~~~~~f~------------------------~ 128 (246)
T 1jmc_A 81 FSKGTLKIANKQFTAVKNDYEMTFNNE-TSVMPCEDD--HH-LP----TVQFDFT------------------------G 128 (246)
T ss_dssp EECCEEEECCGGGCCCCCSEEEECCTT-CEEEECCSC--SC-CC----CCCCCBC------------------------C
T ss_pred ECCCEEEEcccCcccCCCCEEEEEcCC-cEEEEccCc--cc-CC----cceeeeE------------------------E
Confidence 9999999875443 2223221 222111110 00 11 0011111 1
Q ss_pred cccccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCCcc
Q 022219 157 YLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVG 236 (300)
Q Consensus 157 ~~~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G 236 (300)
+ .-|.++..+.++|+++.|+.+. +.. .+.- -.||++..... +.+.. .-|
T Consensus 129 i-~~i~~~~~~~~vDViG~V~~v~-~~~--~~~~-k~~g~~~~~r~--------------~~l~D------------~sg 177 (246)
T 1jmc_A 129 I-DDLENKSKDSLVDIIGICKSYE-DAT--KITV-RSNNREVAKRN--------------IYLMD------------TSG 177 (246)
T ss_dssp G-GGGGGSCTTCEEEEEEEEEEEC-CCE--EEEE-TTTTEEEEEEE--------------EEEEC------------TTC
T ss_pred H-HHHhcccCCCceeEEEEEEEec-CeE--EEEE-ecCCCccEEEE--------------EEEEC------------CCC
Confidence 2 3344445688999999999987 311 1100 01232211100 10000 013
Q ss_pred cEEEEEecCchhhhhhcCCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCCCccccc
Q 022219 237 TVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWD 297 (300)
Q Consensus 237 ~~l~V~~~~~~~~~~~~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~d~~v~~ 297 (300)
+.++|++|...+.. -..+.|..|.|++++++..+| ++......|+|. ++.+.|-+.+
T Consensus 178 ~~i~~tLWg~~a~~--~~~~~~~vv~i~~~~v~~f~g-~~ls~~~~s~i~-inpd~pe~~~ 234 (246)
T 1jmc_A 178 KVVTATLWGEDADK--FDGSRQPVLAIKGARVSDFGG-RSLSVLSSSTII-ANPDIPEAYK 234 (246)
T ss_dssp CEEEEEEEHHHHHH--CCCTTCCEEEEEEEEEECTTS-SEEECCSSCEEE-SSCCSHHHHH
T ss_pred CEEEEEEEchhhhh--cccCCCCEEEEEEEEEEecCC-eEEEecCcceEE-ECCCCHHHHH
Confidence 56789999887752 236899999999999998755 667778888884 6666655543
No 8
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.38 E-value=1.6e-06 Score=83.56 Aligned_cols=88 Identities=15% Similarity=0.288 Sum_probs=70.5
Q ss_pred CCcceeehhhhhhc-cCCEEEEEEEEEecCCcee--c--CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCC--CCC
Q 022219 6 NQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--S--QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPR--VLS 77 (300)
Q Consensus 6 ~~y~y~~l~~~~~~-~~~~vnviGVVvd~~~P~~--t--rG~-D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~--v~~ 77 (300)
..|.|++|.++... .+..|+|||+|++++++.. + .|+ -.+..|+|.|.|.. .|.|.++.+..+.+.. ...
T Consensus 117 ~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~--~i~~tLWg~~A~~f~~~~~~~ 194 (444)
T 4gop_C 117 VKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNR--SVKLTLWGKTAETFPTNAGVD 194 (444)
T ss_dssp CCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCB--EEEEEEEHHHHHTSTTSTTSS
T ss_pred eeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCC--EEEEEEEhhhhhhhhhhhccC
Confidence 46889999999763 4678999999999998754 2 254 57789999999863 3999999876665552 125
Q ss_pred CCCEEEEeeEEEEEEcCe
Q 022219 78 PRDLILLKNVMIKKHQAE 95 (300)
Q Consensus 78 ~GDII~l~r~kv~~~~g~ 95 (300)
.|+||.++.++|+.|+|.
T Consensus 195 ~~~VV~i~~~kV~~f~G~ 212 (444)
T 4gop_C 195 EKPVLAFKGVKVGDFGGR 212 (444)
T ss_dssp SCCEEEEESCEEECTTSS
T ss_pred CCCEEEEEeEEEeecCCe
Confidence 799999999999999996
No 9
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.37 E-value=1.6e-06 Score=76.71 Aligned_cols=92 Identities=13% Similarity=0.201 Sum_probs=72.2
Q ss_pred CCCcceeehhhhhhc-cCCEEEEEEEEEecCCcee--cC--CCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCC
Q 022219 5 RNQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--SQ--GTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSP 78 (300)
Q Consensus 5 ~~~y~y~~l~~~~~~-~~~~vnviGVVvd~~~P~~--tr--G~D-~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~ 78 (300)
...|.|++|+++.+. .+..|+|+|+|++++++.. ++ |++ .+..|+|.|+|.. .|.|.++.+..+.++. ..
T Consensus 121 ~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~--~i~~tLWg~~a~~~~~--~~ 196 (246)
T 1jmc_A 121 TVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGK--VVTATLWGEDADKFDG--SR 196 (246)
T ss_dssp CCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCC--EEEEEEEHHHHHHCCC--TT
T ss_pred cceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCC--EEEEEEEchhhhhccc--CC
Confidence 356889999999763 5678999999999998754 22 554 6779999999863 4999999976666663 57
Q ss_pred CCEEEEeeEEEEEEcCeEEEEee
Q 022219 79 RDLILLKNVMIKKHQAELSAVFY 101 (300)
Q Consensus 79 GDII~l~r~kv~~~~g~~~~~~~ 101 (300)
|+||.|+.++|+.|+| ..+...
T Consensus 197 ~~vv~i~~~~v~~f~g-~~ls~~ 218 (246)
T 1jmc_A 197 QPVLAIKGARVSDFGG-RSLSVL 218 (246)
T ss_dssp CCEEEEEEEEEECTTS-SEEECC
T ss_pred CCEEEEEEEEEEecCC-eEEEec
Confidence 9999999999999955 455443
No 10
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=98.37 E-value=5.3e-06 Score=65.57 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=70.5
Q ss_pred eeehhhhhhccCC-EEEEEEEEEecCCce--ecC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 022219 10 IVRIKELAMHVKH-KVNLLGVVLEFSIPR--KSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (300)
Q Consensus 10 y~~l~~~~~~~~~-~vnviGVVvd~~~P~--~tr-G~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (300)
|+.|+++. .+. .++++|+|++..+++ .++ |+--..++.|.|.|-. |.++++.+..+ .+ ..||||+++
T Consensus 2 f~~I~dL~--~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~---I~~tlW~~~~~---~~-~~G~vv~i~ 72 (119)
T 1o7i_A 2 EEKVGNLK--PNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR---VKLTLWGKHAG---SI-KEGQVVKIE 72 (119)
T ss_dssp BCCGGGCC--TTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE---EEEEEEGGGTT---CC-CTTCEEEEE
T ss_pred cEEHHHCc--CCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE---EEEEEECChhh---cC-CCCCEEEEE
Confidence 56789997 454 699999999998766 455 4337889999999852 99999986543 34 789999999
Q ss_pred eEEEEEEcCeEEEEeecCceEEE
Q 022219 86 NVMIKKHQAELSAVFYKDSSSFA 108 (300)
Q Consensus 86 r~kv~~~~g~~~~~~~~~~ss~~ 108 (300)
+.+++.|+|++++...+. +...
T Consensus 73 ~g~v~~~~g~~qL~i~~~-~~i~ 94 (119)
T 1o7i_A 73 NAWTTAFKGQVQLNAGSK-TKIA 94 (119)
T ss_dssp EEEEEEETTEEEEEECTT-CEEE
T ss_pred eEEEEEeCCEEEEEECCC-EEEE
Confidence 999999999999877643 4444
No 11
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.04 E-value=8.9e-05 Score=57.33 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=69.3
Q ss_pred cccccccCCce-EeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCCccc
Q 022219 159 LSLKDISEHRY-FDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGT 237 (300)
Q Consensus 159 ~~L~di~~~~f-~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~ 237 (300)
..|+||+++.- ++++++|+.+. +.. .=-||+ +.........| + -|
T Consensus 4 ~kI~dl~pg~~~v~v~~~V~~~~-~~~------~~k~G~--~~~v~~~~l~D----------e--------------TG- 49 (106)
T 2k75_A 4 VKIRDVSLSTPYVSVIGKITGIH-KKE------YESDGT--TKSVYQGYIED----------D--------------TA- 49 (106)
T ss_dssp CCSTTCCTTCSEEEEEEEEEEEE-EEE------EEETTE--EEEEEEEEEEC----------S--------------SC-
T ss_pred EEHHHcCCCCceEEEEEEEEEcc-ccc------cccCCC--eeEEEEEEEEc----------C--------------CC-
Confidence 67999999865 89999999998 411 111332 10010111101 0 01
Q ss_pred EEEEEecCchhhhhhcCCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCCCccc
Q 022219 238 VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVV 295 (300)
Q Consensus 238 ~l~V~~~~~~~~~~~~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~d~~v 295 (300)
.+++++|+.. +++|+.|+|+|..++...|.++-.+...++|..+++.+++-
T Consensus 50 ~I~~tlW~~~-------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~~~~~~~~~ 100 (106)
T 2k75_A 50 RIRISSFGKQ-------LQDSDVVRIDNARVAQFNGYLSLSVGDSSRIESVNVNIPLE 100 (106)
T ss_dssp EEEEEEESSC-------CCTTEEEEEEEEEEEEETTEEEEEECTTSEEEECCSCCCCS
T ss_pred eEEEEEEcCc-------cCCCCEEEEEeeEEeEECCEEEEEECCcEEEEECCCCCccc
Confidence 4678888864 99999999999999999999999999999999999888764
No 12
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.00 E-value=6.1e-05 Score=58.55 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=68.0
Q ss_pred eeehhhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEE
Q 022219 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMI 89 (300)
Q Consensus 10 y~~l~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r~kv 89 (300)
++.|+|+... +..||++|.|++...|+ .|+.+ ..+.|-|+|= .|.++++.+. ..+.+ ..||+|+|+++++
T Consensus 5 ~~kI~dl~~~-~~~v~v~~~V~~~~~~~--~~~~~-~~~~l~DeTG---~I~~t~W~~~--~~~~~-~~G~~V~i~n~~v 74 (109)
T 2kbn_A 5 LTKIVDIVEN-GQWANLKAKVIQLWENT--HESIS-QVGLLGDETG---IIKFTIWKNA--ELPLL-EQGESYLLRSVVV 74 (109)
T ss_dssp BCCTTTCCST-TCEEEEEEEEEEEEECC--CSSEE-EEEEEECTTC---CEEEEEEGGG--CCCCC-CTTCEEEEEEEEE
T ss_pred ceEHHHCCCC-CCcEEEEEEEEEeEcCC--CCeEE-EEEEEECCCC---eEEEEEECcc--ccccc-CCCCEEEEEEEEE
Confidence 4568888632 56799999999988753 24444 4589999975 3999999843 56788 7999999999999
Q ss_pred EEEcCeEEEEeecCceEEE
Q 022219 90 KKHQAELSAVFYKDSSSFA 108 (300)
Q Consensus 90 ~~~~g~~~~~~~~~~ss~~ 108 (300)
+.|+|++++..++. +...
T Consensus 75 ~~~~G~~~L~v~~~-~~I~ 92 (109)
T 2kbn_A 75 GEYNDRFQVQVNKN-SSIE 92 (109)
T ss_dssp EEETTEEEEEECSS-SEEE
T ss_pred EEECCEEEEEECCc-eEEE
Confidence 99999999987743 4443
No 13
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.91 E-value=0.00026 Score=54.88 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=69.9
Q ss_pred cccccccC-CceEeEEEEEEEEEeeCCCCeE--EEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCCc
Q 022219 159 LSLKDISE-HRYFDLVCKVFHVSYDDSKGLW--MLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (300)
Q Consensus 159 ~~L~di~~-~~f~Dl~~qVv~~~~~~~~~~~--~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 235 (300)
..|+||++ +.-++++++|+.+. +...+.. .+-|=|.|
T Consensus 6 ~kI~dl~~~~~~v~v~~~V~~~~-~~~~~~~~~~~~l~DeT--------------------------------------- 45 (109)
T 2kbn_A 6 TKIVDIVENGQWANLKAKVIQLW-ENTHESISQVGLLGDET--------------------------------------- 45 (109)
T ss_dssp CCTTTCCSTTCEEEEEEEEEEEE-ECCCSSEEEEEEEECTT---------------------------------------
T ss_pred eEHHHCCCCCCcEEEEEEEEEeE-cCCCCeEEEEEEEECCC---------------------------------------
Confidence 67999998 77899999999998 4222111 11111111
Q ss_pred ccEEEEEecCchhhhhhcCCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCCCcccc
Q 022219 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVW 296 (300)
Q Consensus 236 G~~l~V~~~~~~~~~~~~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~d~~v~ 296 (300)
| .+++++|+... ...+++|++|+|+|..++..+|.++-.+...+.+..++.+.....
T Consensus 46 G-~I~~t~W~~~~---~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~~~~~~~~ 102 (109)
T 2kbn_A 46 G-IIKFTIWKNAE---LPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEPIEVGL 102 (109)
T ss_dssp C-CEEEEEEGGGC---CCCCCTTCEEEEEEEEEEEETTEEEEEECSSSEEEECSSCCCCCC
T ss_pred C-eEEEEEECccc---ccccCCCCEEEEEEEEEEEECCEEEEEECCceEEEECCCcccccc
Confidence 1 36788888432 457999999999999999999999999999999999887655443
No 14
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=97.90 E-value=6e-05 Score=58.22 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=65.9
Q ss_pred ceeehhhhhhccCCEEEEEEEEEecCCceec---CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 022219 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKS---QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (300)
Q Consensus 9 ~y~~l~~~~~~~~~~vnviGVVvd~~~P~~t---rG~-D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l 84 (300)
.+.+|++|. ++..+|+.|+|++..+++.- .|+ -...+++|.|+|- .+.+.+|.+..+ + .+ .+||+|.+
T Consensus 4 ~~~~I~dL~--~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG---~IrvtlW~~~a~-~-~l-~~Gdvv~i 75 (105)
T 3dm3_A 4 DTYNIGELS--PGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG---SIRVTLWDNLTD-I-DV-GRGDYVRV 75 (105)
T ss_dssp CEECGGGCC--SSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE---EEEEEEEGGGGG-S-CC-CTTCEEEE
T ss_pred cceEHHHCC--CCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECcccc-c-cc-CCCCEEEE
Confidence 578999997 56789999999999887542 354 4678899999875 399999986543 4 55 79999999
Q ss_pred eeEEEEEEc-CeEEEEee
Q 022219 85 KNVMIKKHQ-AELSAVFY 101 (300)
Q Consensus 85 ~r~kv~~~~-g~~~~~~~ 101 (300)
+.+++.++ |.+.+...
T Consensus 76 -~g~vk~~~~g~~eL~~g 92 (105)
T 3dm3_A 76 -RGYIREGYYGGLECTAN 92 (105)
T ss_dssp -EEEEEECTTSSEEEEEE
T ss_pred -EEEEEEccCCCEEEEeC
Confidence 89999874 47777654
No 15
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=97.84 E-value=0.00037 Score=66.95 Aligned_cols=211 Identities=12% Similarity=0.145 Sum_probs=124.5
Q ss_pred eeehhhhhhccCCEEEEEEEEEecCCcee---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEEEe
Q 022219 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLILLK 85 (300)
Q Consensus 10 y~~l~~~~~~~~~~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~L-P~v~~~GDII~l~ 85 (300)
+++|++|.... ....+.|-|+.....+. .+|..-..++.|.|++- .|.+.+|.+..+.+ |.+ .+|+++.|.
T Consensus 3 ~~~I~~L~p~~-~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~Is 77 (444)
T 4gop_C 3 IYPIEGLSPYQ-NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG---EIKATGFNDAVDRFYPLL-QENHVYLIS 77 (444)
T ss_dssp CCCSTTCCTTC-CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEETHHHHHHTTTC-CTTCEEEEE
T ss_pred ceeHHHCCCCC-cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC---EEEEEEeHHHHHHHHHhe-ecCCEEEEc
Confidence 67899996332 35899999998776543 24444678899999854 49999998654545 556 899999999
Q ss_pred eEEEEEEcCeEEEEeecCceEEEEEeCCCCCCccccccCCCCcCCCHHHHHHHHHHHHhhhcCccccCCccccccccccc
Q 022219 86 NVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDIS 165 (300)
Q Consensus 86 r~kv~~~~g~~~~~~~~~~ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~~~~~L~di~ 165 (300)
+++|+..++......+ . .... |... ..+.+...... + +.....| ..|.||.
T Consensus 78 ~~~V~~~~~~y~~~~~-~-~ei~-~~~~--T~V~~~~d~~~-i----------------------P~~~~~f-~~i~~i~ 128 (444)
T 4gop_C 78 KARVNIAKKQFSNLQN-E-YEIT-FENS--TEIEECTDATD-V----------------------PEVKYEF-VRINELE 128 (444)
T ss_dssp SCEEEECCGGGCSCCC-S-EEEE-ECTT--CEEEECSCCSS-S----------------------CCCCCCB-CCGGGGG
T ss_pred CCEEEecCCccccCCC-C-EEEE-EcCC--cEEEEccCccc-C----------------------cceeecc-cCHHHHh
Confidence 9999988765332211 1 1111 2221 11111000000 0 0001124 4555554
Q ss_pred ---CCceEeEEEEEEEEEeeCCCCeEEEEEE--cCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCCcccEEE
Q 022219 166 ---EHRYFDLVCKVFHVSYDDSKGLWMLFVW--DGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLR 240 (300)
Q Consensus 166 ---~~~f~Dl~~qVv~~~~~~~~~~~~L~Vw--DgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~~l~ 240 (300)
.+.++|+++.|+.+. +.. .+ .. ||++..... +.+.. --|..++
T Consensus 129 ~~~~~~~vDViG~V~~v~-~~~--~i---~~k~~g~~~~kr~--------------i~L~D------------~sg~~i~ 176 (444)
T 4gop_C 129 SVEANQQCDVIGILDSYG-ELS--EI---VSKASQRPVQKRE--------------LTLVD------------QGNRSVK 176 (444)
T ss_dssp GSCSSCCCBEEEEEEEEC-CCE--EE---CCTTTCSCEEEEE--------------EEEEC------------TTCBEEE
T ss_pred ccCCCCceEEEEEEEEcC-CcE--EE---EEccCCceeeEEE--------------EEEEe------------CCCCEEE
Confidence 688999999999987 311 10 11 222111100 00000 0134678
Q ss_pred EEecCchhhhhh--cCCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEE
Q 022219 241 VSTDRSYENFGR--YFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRL 287 (300)
Q Consensus 241 V~~~~~~~~~~~--~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~ 287 (300)
|++|...+.... .....|..|.|++++++..+|. .......|+|.+
T Consensus 177 ~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~-~ls~~~~s~i~i 224 (444)
T 4gop_C 177 LTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGR-SLSMFSSSTMLI 224 (444)
T ss_dssp EEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSS-EEECCTTCEEEE
T ss_pred EEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCe-EEeccccceEEE
Confidence 999888775322 1267899999999999987775 556667788744
No 16
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.84 E-value=0.00045 Score=56.33 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=46.4
Q ss_pred EEEEEecCchhhhhhcCCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCCCcccc
Q 022219 238 VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVW 296 (300)
Q Consensus 238 ~l~V~~~~~~~~~~~~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~d~~v~ 296 (300)
++++++|+..+ +.+++||.|+|+|..+++..|.++-.+...++|..++..+-.|.
T Consensus 74 ~I~ftlW~e~~----~~l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~e~~~~v~ 128 (145)
T 1wjj_A 74 CILFTARNDQV----DLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVK 128 (145)
T ss_dssp EEEEEECTTHH----HHTCTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCSCCCSCCC
T ss_pred EEEEEEecCCc----CcCCCCCEEEEeccEEEeECCEEEEEECCCEEEEECCCCcEEEe
Confidence 57889998644 34899999999999999999999999999999999887655444
No 17
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=97.76 E-value=0.00016 Score=54.85 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=62.8
Q ss_pred eehhhhhhccCCEEEEEEEEEecCCcee-cC--CC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 022219 11 VRIKELAMHVKHKVNLLGVVLEFSIPRK-SQ--GT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (300)
Q Consensus 11 ~~l~~~~~~~~~~vnviGVVvd~~~P~~-tr--G~-D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r 86 (300)
.+|+++. ++..++++|.|++..+++. ++ |+ --..+++|.|+|- .|.+.+|.+.. .+ .+ ++||+|.+ +
T Consensus 3 ~kI~dl~--~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG---~I~~tlW~~~~-~~-~i-~~Gdvv~i-~ 73 (97)
T 3e0e_A 3 YKISELM--PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG---SIRGTLWNELA-DF-EV-KKGDIAEV-S 73 (97)
T ss_dssp ECGGGCC--TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE---EEEEEEEGGGG-GC-CC-CTTCEEEE-E
T ss_pred eEHHHCC--CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECCcc-cc-cc-CCCCEEEE-E
Confidence 3788887 5678999999999998765 32 54 3678899999865 39999998654 34 56 79999999 8
Q ss_pred EEEEEEcCeEEEEee
Q 022219 87 VMIKKHQAELSAVFY 101 (300)
Q Consensus 87 ~kv~~~~g~~~~~~~ 101 (300)
.+++.+.|++++...
T Consensus 74 g~v~~~~~~~el~~g 88 (97)
T 3e0e_A 74 GYVKQGYSGLEISVD 88 (97)
T ss_dssp EEEEEC--CEEEEEE
T ss_pred EEEEEcCCeEEEEEC
Confidence 899999998887665
No 18
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.73 E-value=0.00024 Score=55.39 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=72.2
Q ss_pred ccccccccccCCceEeEEEEEEEEEeeCC-----C----CeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCh
Q 022219 156 DYLLSLKDISEHRYFDLVCKVFHVSYDDS-----K----GLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDL 226 (300)
Q Consensus 156 ~~~~~L~di~~~~f~Dl~~qVv~~~~~~~-----~----~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (300)
.+ ..|+|+++|..+|+++.|+.+. +.. + ....+.+.|.|+
T Consensus 6 ~~-~~I~~L~~g~~v~i~~~V~~~~-~~~~~~~k~G~~~~~~~~~l~D~TG----------------------------- 54 (115)
T 2k50_A 6 RM-DTISKLEEGAETPVTGRVMKIS-SPRTFTTRKGREGKLANVIIADDTG----------------------------- 54 (115)
T ss_dssp CC-CCTTTCCTTCEEEEEEEEEEEC-CCEECCCTTSSCCEEEEEEEEETTE-----------------------------
T ss_pred ce-EEHHHCCCCCEeEEEEEEEECC-CceEEEcCCCCEEEEEEEEEEeCCC-----------------------------
Confidence 35 7899999999999999999994 211 1 234555666553
Q ss_pred hhhhcCCCcccEEEEEecCchhhhhhcCCCCCcEEEEeccEEEe-eCcEEEEEEeeCCceEEcCCCC
Q 022219 227 ETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV-SSGMWHGLLQSSSKIRLFSDND 292 (300)
Q Consensus 227 ~~~~~~p~~G~~l~V~~~~~~~~~~~~~lk~G~wv~l~Nv~~k~-~~g~leg~l~~~sk~~~l~~~d 292 (300)
.+++++|+..+.. .+.+++|+.|+|.|..++. .+|.++-.+...+.+...++-.
T Consensus 55 -----------~I~~t~w~~~~~~-~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~~~ 109 (115)
T 2k50_A 55 -----------ELRAVFWTENIKL-LKKFREGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDPLE 109 (115)
T ss_dssp -----------EEEEEEETTGGGG-GGTCCTTSEEEEEEEEECCCSSSSCEEEECTTCCEEEESSCC
T ss_pred -----------eEEEEEeCchhhh-hhcCCCCCEEEEEeeEEccccCCeEEEEECCCceEEECCccc
Confidence 2568888877643 4679999999999999886 6789999999999998876543
No 19
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=97.56 E-value=0.00075 Score=53.02 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=66.0
Q ss_pred cccccccCCc-eEeEEEEEEEEEeeC-----CCC---eEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhh
Q 022219 159 LSLKDISEHR-YFDLVCKVFHVSYDD-----SKG---LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETL 229 (300)
Q Consensus 159 ~~L~di~~~~-f~Dl~~qVv~~~~~~-----~~~---~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (300)
..|+||+++. -+|+++.|+.+. +. .++ ...+.+-|-|
T Consensus 3 ~~I~dL~~~~~~v~~~~~V~~~~-~~~~~~~k~G~~~~~~~~l~D~T--------------------------------- 48 (119)
T 1o7i_A 3 EKVGNLKPNMESVNVTVRVLEAS-EARQIQTKNGVRTISEAIVGDET--------------------------------- 48 (119)
T ss_dssp CCGGGCCTTCSSEEEEEEEEEEC-CCEEECCTTCCEEEEEEEEEETT---------------------------------
T ss_pred EEHHHCcCCCCcEEEEEEEEECC-CCeeEEecCCCEEEEEEEEEeCC---------------------------------
Confidence 6799999986 799999999886 21 111 1122222222
Q ss_pred hcCCCcccEEEEEecCchhhhhhcCCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCC
Q 022219 230 RNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (300)
Q Consensus 230 ~~~p~~G~~l~V~~~~~~~~~~~~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~ 291 (300)
| .+++++|+..+ +.+++|+.|+|+|..++..+|.++-.+...++|...++.
T Consensus 49 ------G-~I~~tlW~~~~----~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~~~i~~~~~~ 99 (119)
T 1o7i_A 49 ------G-RVKLTLWGKHA----GSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASED 99 (119)
T ss_dssp ------E-EEEEEEEGGGT----TCCCTTCEEEEEEEEEEEETTEEEEEECTTCEEEECCCT
T ss_pred ------C-EEEEEEECChh----hcCCCCCEEEEEeEEEEEeCCEEEEEECCCEEEEEcCCc
Confidence 2 26788888754 358999999999999999999999999999999998753
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.53 E-value=0.00025 Score=57.81 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=67.3
Q ss_pred CCcceeehhhhhhccCCEEEEEEEEEecCCce---ec-C--C-------CceEEEEEEEeCCCCCCCeEEEEecCCCCCC
Q 022219 6 NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPR---KS-Q--G-------TDYVCVLKIVDDSQQSPELLVNIFTSSIDQL 72 (300)
Q Consensus 6 ~~y~y~~l~~~~~~~~~~vnviGVVvd~~~P~---~t-r--G-------~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~L 72 (300)
.+-.|+.|+||... ...+|+.|.|++...+. +. | | ..-.+++.|-|++=. |.+.+..+ ..
T Consensus 12 ~kp~~~kI~dL~pg-~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~---I~ftlW~e---~~ 84 (145)
T 1wjj_A 12 RKPVFVKVEQLKPG-TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC---ILFTARND---QV 84 (145)
T ss_dssp CCCSSCCSTTCCTT-CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE---EEEEECTT---HH
T ss_pred cCccceEHHHcCCC-CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE---EEEEEecC---Cc
Confidence 45678899999732 23499999999988765 22 2 3 456788899998752 77777764 23
Q ss_pred CCCCCCCCEEEEeeEEEEEEcCeEEEEeec
Q 022219 73 PRVLSPRDLILLKNVMIKKHQAELSAVFYK 102 (300)
Q Consensus 73 P~v~~~GDII~l~r~kv~~~~g~~~~~~~~ 102 (300)
+.+ ..||+|+|+++.+..|+|++.+..++
T Consensus 85 ~~l-~~Gd~v~i~na~v~~~~G~~~L~vgk 113 (145)
T 1wjj_A 85 DLM-KPGATVILRNSRIDMFKGTMRLGVDK 113 (145)
T ss_dssp HHT-CTTCEEEEEEEEEEEETTEEEEEECT
T ss_pred CcC-CCCCEEEEeccEEEeECCEEEEEECC
Confidence 445 58999999999999999999887764
No 21
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.93 E-value=0.012 Score=45.22 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=64.1
Q ss_pred ccccccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCCc
Q 022219 156 DYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (300)
Q Consensus 156 ~~~~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 235 (300)
.+ ..|+||+++..+|+++.|+.+. +. ..+ .-.||+.-.-.. ....| --
T Consensus 4 ~~-~~I~dL~~~~~v~v~g~V~~~~-~~--r~~--~~~~G~~~~v~~--~~l~D------------------------~T 51 (105)
T 3dm3_A 4 DT-YNIGELSPGMTATFEGEVISAL-PI--KEF--KRADGSIGKLKS--FIVRD------------------------ET 51 (105)
T ss_dssp CE-ECGGGCCSSEEEEEEEEEEEEE-EE--EEE--ECTTSCEEEEEE--EEEEE------------------------TT
T ss_pred cc-eEHHHCCCCCeEEEEEEEEECC-Cc--eEE--EcCCCCeeEEEE--EEEEC------------------------CC
Confidence 35 7899999999999999999988 31 011 112333211100 00000 01
Q ss_pred ccEEEEEecCchhhhhhcCCCCCcEEEEeccEEEee-CcEEEEEEeeCCceEEcCC
Q 022219 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-SGMWHGLLQSSSKIRLFSD 290 (300)
Q Consensus 236 G~~l~V~~~~~~~~~~~~~lk~G~wv~l~Nv~~k~~-~g~leg~l~~~sk~~~l~~ 290 (300)
| .+++++|+..+.. .+++|+.|.| |-.++.. .|.+|-.+-.++.+...+.
T Consensus 52 G-~IrvtlW~~~a~~---~l~~Gdvv~i-~g~vk~~~~g~~eL~~g~~~~i~~~~~ 102 (105)
T 3dm3_A 52 G-SIRVTLWDNLTDI---DVGRGDYVRV-RGYIREGYYGGLECTANYVEILKKGEK 102 (105)
T ss_dssp E-EEEEEEEGGGGGS---CCCTTCEEEE-EEEEEECTTSSEEEEEEEEEEEECCC-
T ss_pred C-cEEEEEECccccc---ccCCCCEEEE-EEEEEEccCCCEEEEeCCceEEEeccc
Confidence 2 3689988877743 7999999999 9889886 6688998888887765443
No 22
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.58 E-value=0.02 Score=43.11 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=57.9
Q ss_pred cccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCCcccE
Q 022219 159 LSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTV 238 (300)
Q Consensus 159 ~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~~ 238 (300)
..|+||+++..+++++.|+.+. + .-...=-||++-.-.. ....| + -| .
T Consensus 3 ~kI~dl~~g~~v~i~~~V~~~~-~----~r~~~~~~G~~~~v~~--~~l~D----------e--------------TG-~ 50 (97)
T 3e0e_A 3 YKISELMPNLSGTINAEVVTAY-P----KKEFSRKDGTKGQLKS--LFLKD----------D--------------TG-S 50 (97)
T ss_dssp ECGGGCCTTEEEEEEEEEEEEC-C----CEEEC----CCEEEEE--EEEEE----------T--------------TE-E
T ss_pred eEHHHCCCCCcEEEEEEEEECC-C----ceEEEcCCCCeeEEEE--EEEEC----------C--------------CC-c
Confidence 4699999999999999999887 2 1111122443211100 10000 0 11 4
Q ss_pred EEEEecCchhhhhhcCCCCCcEEEEeccEEEeeCcEEEEEEeeCCceE
Q 022219 239 LRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR 286 (300)
Q Consensus 239 l~V~~~~~~~~~~~~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~ 286 (300)
+++++|+..+.. .+++||.|++ |=.++...|.+|-.+...+.|.
T Consensus 51 I~~tlW~~~~~~---~i~~Gdvv~i-~g~v~~~~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 51 IRGTLWNELADF---EVKKGDIAEV-SGYVKQGYSGLEISVDNIGIIE 94 (97)
T ss_dssp EEEEEEGGGGGC---CCCTTCEEEE-EEEEEEC--CEEEEEEEEEEEE
T ss_pred EEEEEECCcccc---ccCCCCEEEE-EEEEEEcCCeEEEEECCCcEEE
Confidence 689988876642 7999999999 6677887778898888887775
No 23
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.03 Score=43.37 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=69.0
Q ss_pred ccccccccccCCce-EeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCC
Q 022219 156 DYLLSLKDISEHRY-FDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFP 234 (300)
Q Consensus 156 ~~~~~L~di~~~~f-~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 234 (300)
.+ .+|++|+++.- ..+.++|++++ + ++.|-....+...+...+-| -
T Consensus 3 ~~-~~Is~L~p~~~~w~I~~rV~~k~-~-------~r~~~~~~~~g~~~~~~L~D------------------------e 49 (114)
T 1ynx_A 3 PI-FAIEQLSPYQNVWTIKARVSYKG-E-------IKTWHNQRGDGKLFNVNFLD------------------------T 49 (114)
T ss_dssp CB-CCGGGCCTTTCCCEEEEEEEEEE-E-------EEEEECSSCEEEEEEEEEEE------------------------T
T ss_pred ce-EEHHHCCCCCCceEEEEEEEEec-c-------ceEEecCCCCceEEEEEEEC------------------------C
Confidence 35 78999999765 89999999887 3 11121100000000000000 0
Q ss_pred cccEEEEEecCchhhhhhcCCCCCcEEEEeccEEEee-------CcEEEEEEeeCCceEEcCCCC
Q 022219 235 VGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-------SGMWHGLLQSSSKIRLFSDND 292 (300)
Q Consensus 235 ~G~~l~V~~~~~~~~~~~~~lk~G~wv~l~Nv~~k~~-------~g~leg~l~~~sk~~~l~~~d 292 (300)
-| .+++++|+..+......|++|+|+.|.|-+++.. ..-+|-.|...|.|....+++
T Consensus 50 ~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~ 113 (114)
T 1ynx_A 50 SG-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDES 113 (114)
T ss_dssp TE-EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCCCC
T ss_pred CC-eEEEEECHHHHHHHHhhcccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCCCC
Confidence 24 5788888877655577899999999999999872 457899999999999887654
No 24
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=95.38 E-value=0.2 Score=45.09 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=64.5
Q ss_pred ccccccccccCCceEeEEEEEEEEEee--C-CCC-eEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhc
Q 022219 156 DYLLSLKDISEHRYFDLVCKVFHVSYD--D-SKG-LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRN 231 (300)
Q Consensus 156 ~~~~~L~di~~~~f~Dl~~qVv~~~~~--~-~~~-~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (300)
+| ..|++++.++.+|+++-|+..... . ..+ ..+|.++|=+..
T Consensus 5 ~y-~~l~~l~~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~--------------------------------- 50 (294)
T 1xjv_A 5 IY-TPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV--------------------------------- 50 (294)
T ss_dssp CC-CCGGGCCSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC---------------------------------
T ss_pred eE-EEHHHhhCCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCC---------------------------------
Confidence 46 789999999999999999987631 1 122 668888885510
Q ss_pred CCCcccEEEEEecCchhhhhhcCC-CCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcC
Q 022219 232 FFPVGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFS 289 (300)
Q Consensus 232 ~p~~G~~l~V~~~~~~~~~~~~~l-k~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~ 289 (300)
| +.|.+...+.+ ....+ ++||.|+|+|++++..+|.+.|.......+...+
T Consensus 51 ----g--l~v~iF~~~~~-~LP~v~~~GDII~l~~vki~~~~g~~~~v~~~~~s~~~f~ 102 (294)
T 1xjv_A 51 ----K--LTCLLFSGNYE-ALPIIYKNGDIVRFHRLKIQVYKKETQGITSSGFASLTFE 102 (294)
T ss_dssp ----E--EEEEEEESSGG-GSCCCCSTTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred ----C--EEEEEECCChH-HCCCCCCCCCEEEEEEEEEEEECCeEEEEccCCeEEEEEC
Confidence 1 34544333332 25556 9999999999999999988888776655554443
No 25
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=95.03 E-value=0.43 Score=40.20 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=60.0
Q ss_pred cccccCCceEeEEEEEEEEEeeC----CC-C-eEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCC
Q 022219 161 LKDISEHRYFDLVCKVFHVSYDD----SK-G-LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFP 234 (300)
Q Consensus 161 L~di~~~~f~Dl~~qVv~~~~~~----~~-~-~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 234 (300)
|.+++.++.+|+++-|+...... .. + ..+|.++|=+- +. . +
T Consensus 36 l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~-~~-~-------------------------------~ 82 (187)
T 1qzg_A 36 QELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTC-DT-S-------------------------------S 82 (187)
T ss_dssp TSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTS-CT-T-------------------------------S
T ss_pred HhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCC-CC-C-------------------------------C
Confidence 45667899999999998776322 12 3 56888998663 11 0 0
Q ss_pred cccEEEEEecCchhhhhhcCC-CCCcEEEEeccEEEeeCcEEEEEEeeCCceEE
Q 022219 235 VGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRL 287 (300)
Q Consensus 235 ~G~~l~V~~~~~~~~~~~~~l-k~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~ 287 (300)
..|.|.+-.+... ....+ ++||.|+|+|++++..+|...|.....+.+..
T Consensus 83 --~gL~v~iF~~~~e-~LP~V~~~GDIIlL~rvkiq~~~g~~~~v~~~~~s~a~ 133 (187)
T 1qzg_A 83 --IGLQIHLFSKQGN-DLPVIKQVGQPLLLHQITLRSYRDRTQGLSKDQFRYAL 133 (187)
T ss_dssp --CCEEEEEEESSSS-CSCCCCSTTCEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred --CceEEEEECCChh-hCCCCCCCCCEEEEEEEEEEEECCeEEEEEcCceeEEE
Confidence 1134543222221 24455 88999999999999999999997777644444
No 26
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.0082 Score=46.62 Aligned_cols=82 Identities=11% Similarity=0.136 Sum_probs=62.9
Q ss_pred ceeehhhhhhccCCEEEEEEEEEecCCcee---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEEE
Q 022219 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLILL 84 (300)
Q Consensus 9 ~y~~l~~~~~~~~~~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~L-P~v~~~GDII~l 84 (300)
.+++|++|.... ...++.|-|+....++. .+|.--.+++.|.|++- .|.+.+|.+..+.+ +.+ ++|+++.+
T Consensus 3 ~~~~Is~L~p~~-~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~I 77 (114)
T 1ynx_A 3 PIFAIEQLSPYQ-NVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG---EIRATAFNDFATKFNEIL-QEGKVYYV 77 (114)
T ss_dssp CBCCGGGCCTTT-CCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE---EEEEEECHHHHHHHHHHS-CSSSEEEE
T ss_pred ceEEHHHCCCCC-CceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC---eEEEEECHHHHHHHHhhc-ccCcEEEE
Confidence 578999997322 35899999998776533 25667888999999975 49999998755544 446 89999999
Q ss_pred eeEEEEEEcCe
Q 022219 85 KNVMIKKHQAE 95 (300)
Q Consensus 85 ~r~kv~~~~g~ 95 (300)
.+++|+.-++.
T Consensus 78 s~~~V~~a~~~ 88 (114)
T 1ynx_A 78 SKAKLQPAKPQ 88 (114)
T ss_dssp ESCEEEECCTT
T ss_pred CCcEEEECCCC
Confidence 99999986554
No 27
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=94.76 E-value=0.35 Score=48.74 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=102.1
Q ss_pred eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEEEEEcC-----eEEEEeecCceEEEEEeCCCCCCc
Q 022219 44 YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA-----ELSAVFYKDSSSFALFDGNSGSNL 118 (300)
Q Consensus 44 ~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r~kv~~~~g-----~~~~~~~~~~ss~~vf~~~~~~~~ 118 (300)
=++.++|+|-.-......++|-+|.++ +......|.++++.++.....++ .+++.+.+. +.|---+..
T Consensus 511 p~~klRV~d~~~~~k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAtk~-T~~~~L~~~----- 583 (738)
T 1miu_A 511 TVWKLRVTSYKKKEKSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTATKR-TQYQQLPVS----- 583 (738)
T ss_dssp CEEEEEEEESSSSCCCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEEEE-EEEEEECCC-----
T ss_pred eeEEEEEEeccCCCceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCCCccCccceEEEeeccc-ceeEECCcc-----
Confidence 357788888554445688999998755 44434799999999998876654 256555533 666522211
Q ss_pred cccccCCCCcCCCHHHHHHHHHHHHhhhcCccccCCccccccccc---ccCCceEeEEEEEEEEEeeCCCCeEEEEEEcC
Q 022219 119 LPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKD---ISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDG 195 (300)
Q Consensus 119 ~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~~~~~L~d---i~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDg 195 (300)
++. |.. ..++....+ | ..|.+ ..+.+.||++|-||.+- ...+..-.+|+.|+
T Consensus 584 -------------~~~------~~~--~~~pR~~~~--~-~~l~~~~f~p~~~EvDivG~Vv~v~-~~~~~~~~vylsD~ 638 (738)
T 1miu_A 584 -------------SET------LLQ--VYQPRESLH--F-SRLSDPAFQPPCSEVDVVGVVVSVV-KPIGLAPLVYLSDE 638 (738)
T ss_dssp -------------HHH------HTT--TCCCCCBCC--S-GGGGSSSCCTTTTEEEEEEEEEEEE-CCTTSCCEEEEECS
T ss_pred -------------hhh------hcc--ccCCcceee--H-HHhcCccccCCCCceeEEEEEEEEc-ccCcccceEEEEcC
Confidence 100 000 011111111 4 44444 45689999999999997 43444558888885
Q ss_pred CCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCCcccEEEEEecCchhhhhhcCCCCCcEEEEeccEEEee--Cc
Q 022219 196 TDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS--SG 273 (300)
Q Consensus 196 T~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~~l~V~~~~~~~~~~~~~lk~G~wv~l~Nv~~k~~--~g 273 (300)
.-| .+-|.+|.... .+ +++|..|-+.|++.+-- .|
T Consensus 639 ~~n---------------------------------------ll~Ikf~~~l~---eD-~~~~~~va~sNL~~r~~~~~~ 675 (738)
T 1miu_A 639 CLN---------------------------------------LLVVKFGIDLN---ED-IKPRVLIAASNLQCQPESTSG 675 (738)
T ss_dssp SSC---------------------------------------EEEEEESSCCC---SC-CCSSCEEEEEEEECCSCCSSS
T ss_pred CCc---------------------------------------EEEEEEecCch---hh-CccccEEEEeeeEeecccccc
Confidence 421 13456666644 34 99999999999999863 44
Q ss_pred EEEEEEeeCCceE
Q 022219 274 MWHGLLQSSSKIR 286 (300)
Q Consensus 274 ~leg~l~~~sk~~ 286 (300)
.--.+-.+.|-+.
T Consensus 676 ip~~~a~~~t~fs 688 (738)
T 1miu_A 676 VPTLFAGHFSIFS 688 (738)
T ss_dssp CCCEEECTTCEEE
T ss_pred CceEEeccceEEe
Confidence 4333334444333
No 28
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=94.11 E-value=0.46 Score=37.61 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=50.4
Q ss_pred CEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCC----CCCCCCCCCCEEEEeeEEEEEEcCeEE
Q 022219 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID----QLPRVLSPRDLILLKNVMIKKHQAELS 97 (300)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~----~LP~v~~~GDII~l~r~kv~~~~g~~~ 97 (300)
..|.++|+|..... ..=.++++|-|.|- .|.+.++-...+ ..+.+ .+|++|++..- ++.|+|+.+
T Consensus 37 ~~V~iVG~V~~~~~------~~~~~~~~ldD~TG---~I~~~~W~~~~~~~~~~~~~~-~~g~yVrV~G~-v~~f~g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISR------NATNVAYSVEDGTG---QIEVRQWLDSSSDDSSKASEI-RNNVYVRVLGT-LKSFQNRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEE------CSSEEEEEEECSSC---EEEEEEECC--------CCSC-CTTCEEEEEEE-EEEETTEEE
T ss_pred EEEEEEEEEEEEEe------cCCeEEEEEECCCC---CEEEEEecccCCccccccccc-CCCCEEEEEEE-EEEeCCEEE
Confidence 45899999999853 12267889999765 399999975443 46777 79999999665 899999987
Q ss_pred EEee
Q 022219 98 AVFY 101 (300)
Q Consensus 98 ~~~~ 101 (300)
+...
T Consensus 106 i~~~ 109 (136)
T 4gop_B 106 ISSG 109 (136)
T ss_dssp EEES
T ss_pred EEEE
Confidence 7653
No 29
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=93.85 E-value=0.06 Score=46.02 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=58.1
Q ss_pred Ccceeehhhhhhc------cCCEEEEEEEEEecCCceecC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 022219 7 QGGIVRIKELAMH------VKHKVNLLGVVLEFSIPRKSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPR 79 (300)
Q Consensus 7 ~y~y~~l~~~~~~------~~~~vnviGVVvd~~~P~~tr-G~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~G 79 (300)
...+++|++++.. .....-++|||++-..|+.+. |+.| +..+|.|-.-....+.+-+|....+.+=.+ .+|
T Consensus 35 ~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~gk~y-~~w~l~DL~~~~~~V~lfLFg~a~~~~~k~-~~G 112 (200)
T 3ebe_A 35 GRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTF-SIWRLNDLKDLDKYISLFLFGDVHKEHWKT-DQG 112 (200)
T ss_dssp TCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-------CC-EEEEEECSSSTTCCEEEEECHHHHHHHTTC-CTT
T ss_pred CCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCCCCeE-EEEEEEecCCCCcEEEEEEechHHHHhcCc-CCc
Confidence 4578888888652 123577999999999998874 6666 468999877655569999998655555577 799
Q ss_pred CEEEEeeEEEE
Q 022219 80 DLILLKNVMIK 90 (300)
Q Consensus 80 DII~l~r~kv~ 90 (300)
+||-|=|-.+-
T Consensus 113 ~ViaiLNP~i~ 123 (200)
T 3ebe_A 113 TVIGLLNANPM 123 (200)
T ss_dssp EEEEEESCEEC
T ss_pred eEEEEECCEEc
Confidence 99999999874
No 30
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=93.80 E-value=0.71 Score=36.32 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=48.7
Q ss_pred CEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCCCCCCCEEEEeeEEEEEEcCeEEE
Q 022219 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRVLSPRDLILLKNVMIKKHQAELSA 98 (300)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~---~LP~v~~~GDII~l~r~kv~~~~g~~~~ 98 (300)
..|.+.|+|.+... .+-.++++|-|.|-. .|.|.++-...+ ....+ ..||.|++..- ++.|+|+.++
T Consensus 32 ~~V~iVG~V~~~~~------~~~~~~~~ldD~TG~--~I~~~~W~~~~~~~~~~~~~-~~g~yVrV~G~-l~~f~g~~qi 101 (132)
T 3kdf_D 32 SQVTIVGIIRHAEK------APTNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTVV-PPETYVKVAGH-LRSFQNKKSL 101 (132)
T ss_dssp CEEEEEEEEEEEEE------CSSEEEEEEECSSSS--CEEEEEEC---------CCC-CTTCEEEEEEE-EEEETTEEEE
T ss_pred EEEEEEEEEEEEEE------cCCeEEEEEECCCCC--EEEEEEEccCCCcccccccc-cCCCEEEEEEE-EEeECCEEEE
Confidence 45889999999852 234678899997642 399999975432 25556 78999999765 8899999776
Q ss_pred Ee
Q 022219 99 VF 100 (300)
Q Consensus 99 ~~ 100 (300)
..
T Consensus 102 ~~ 103 (132)
T 3kdf_D 102 VA 103 (132)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 31
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=93.51 E-value=0.81 Score=32.93 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=66.1
Q ss_pred hhhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEEEE
Q 022219 13 IKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMIKK 91 (300)
Q Consensus 13 l~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~-~~~~LP~v~~~GDII~l~r~kv~~ 91 (300)
|++++....+...+.+-|+|... +|--+.++|.|.|+.. .++|.||-. .-|.--.. ++.---.+..+.-|.
T Consensus 4 isevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvrqi 75 (109)
T 3u4z_A 4 ISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVRQI 75 (109)
T ss_dssp HHHHTTCCCSEEEEEEEEEEEEC------CSSCEEEEEECSSCSS-CEEEEECTTHHHHHTTTC-CTTCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc------CCCceEEEeecccccc-eeEEEEchhHHHHHHhhc-chhhhhhHHHHHHHH
Confidence 56777667788999999999743 5667899999999974 499999974 12344444 677888888899999
Q ss_pred EcCeEEEEeecCceEE
Q 022219 92 HQAELSAVFYKDSSSF 107 (300)
Q Consensus 92 ~~g~~~~~~~~~~ss~ 107 (300)
||++.++-.+-. ||.
T Consensus 76 yndevqlknnih-ssi 90 (109)
T 3u4z_A 76 YNDEVQLKNNIH-SSI 90 (109)
T ss_dssp SSSCEEEECCTT-CEE
T ss_pred hhhHHhHhhhhh-hhh
Confidence 999999877744 443
No 32
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=92.97 E-value=0.83 Score=44.21 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=70.1
Q ss_pred ccccccccc--cCCceEeEEEEEEEEEe--eCC-CC-eEEEEEEcCCCC-CCCCCCCCCCcccCCCCCCcccCCCCChhh
Q 022219 156 DYLLSLKDI--SEHRYFDLVCKVFHVSY--DDS-KG-LWMLFVWDGTDV-PPLSIPGKLEDEEHNPLPLHIESSPLDLET 228 (300)
Q Consensus 156 ~~~~~L~di--~~~~f~Dl~~qVv~~~~--~~~-~~-~~~L~VwDgT~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (300)
.| ..|+++ +.++.+|+++-|+.... ... .+ ..+|.|+|-+-+ +...+.+ +..
T Consensus 37 ~y-~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~G------------------l~~-- 95 (495)
T 1jb7_A 37 EY-VELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAG------------------DAS-- 95 (495)
T ss_dssp CB-CCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSC------------------SCB--
T ss_pred cc-EEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccc------------------ccc--
Confidence 47 889988 47999999999997762 211 22 678999998754 1111110 000
Q ss_pred hhcCCCcccEEEEEe-cCchhhhhhcCC-CCCcEEEEeccEEEeeCcEEEEEEeeC--CceEEcCCCC
Q 022219 229 LRNFFPVGTVLRVST-DRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSS--SKIRLFSDND 292 (300)
Q Consensus 229 ~~~~p~~G~~l~V~~-~~~~~~~~~~~l-k~G~wv~l~Nv~~k~~~g~leg~l~~~--sk~~~l~~~d 292 (300)
....|.+ .++.+ ....+ ++||.|+|+|++++..+|...|..... |.|.+.+.++
T Consensus 96 --------~~~~v~iF~~~~e--~LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~ 153 (495)
T 1jb7_A 96 --------DYATLVLYAKRFE--DLPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDK 153 (495)
T ss_dssp --------CCEEEEEEESSGG--GSCCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSS
T ss_pred --------CceEEEEECCChH--HCCCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCc
Confidence 1124543 33333 25556 699999999999999999998888755 6777777655
No 33
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=92.13 E-value=0.27 Score=39.70 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=55.5
Q ss_pred ceeehhhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCC--------------CC------CeEEEEecCC
Q 022219 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQ--------------SP------ELLVNIFTSS 68 (300)
Q Consensus 9 ~y~~l~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~--------------~~------gl~v~iF~~~ 68 (300)
.|.-|+|+. .++.++++|=|+.. +. .+ -.++|.++|=+.. |. .|.|.+|-++
T Consensus 4 kf~llkdv~--~~~F~Dl~~qVv~~--~~--~~--~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~h 75 (143)
T 4hik_A 4 SFSLLSQIT--PHQRCSFYAQVIKT--WY--SD--KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEH 75 (143)
T ss_dssp CCCCGGGCC--SSCEEEEEEEEEEE--EE--CS--SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHH
T ss_pred hhhhHHhCC--CCCeEEEEEEEEEE--Ec--CC--CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcH
Confidence 456688887 78999999999983 22 22 5678889885533 11 3899998776
Q ss_pred CCCCCC-CCCCCCEEEEeeEEEEEEcC
Q 022219 69 IDQLPR-VLSPRDLILLKNVMIKKHQA 94 (300)
Q Consensus 69 ~~~LP~-v~~~GDII~l~r~kv~~~~g 94 (300)
.+..=. + .+||.|+|+|++++.-.+
T Consensus 76 a~~ar~~l-k~Gd~v~L~Nv~iK~~~~ 101 (143)
T 4hik_A 76 DFYCRNYI-KEGDYVVMKNVRTKIDHL 101 (143)
T ss_dssp HHHHTTTC-CTTCEEEEEEEEEEECTT
T ss_pred HHHHHhhC-CCCCEEEEEeEEEeecCC
Confidence 543333 5 789999999999987643
No 34
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=91.75 E-value=1.5 Score=38.94 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=56.2
Q ss_pred eeehhhhhhcc--------C----CEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCC
Q 022219 10 IVRIKELAMHV--------K----HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPR 74 (300)
Q Consensus 10 y~~l~~~~~~~--------~----~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~---~LP~ 74 (300)
=++|+++++.. + ..|.++|+|+.... ++ =.++++|-|.+-. .|.++++....+ ....
T Consensus 48 PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~-----~~-~~~~~~L~D~TG~--~I~~k~W~~~~~~~~~~~~ 119 (270)
T 2pi2_A 48 PCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK-----AP-TNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTV 119 (270)
T ss_dssp ECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEE-----CS-SEEEEEEECSSSS--CEEEEEECC-------CCC
T ss_pred EEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEe-----cc-ceEEEEEECCCCC--EEEEEEEcCcCcccchhhc
Confidence 35677777631 1 35889999998632 23 3568899997641 299999975432 3445
Q ss_pred CCCCCCEEEEeeEEEEEEcCeEEEEee
Q 022219 75 VLSPRDLILLKNVMIKKHQAELSAVFY 101 (300)
Q Consensus 75 v~~~GDII~l~r~kv~~~~g~~~~~~~ 101 (300)
+ .+|++|+++. +++.|+|+.++...
T Consensus 120 ~-~~G~yVrV~G-~v~~f~g~~qi~i~ 144 (270)
T 2pi2_A 120 V-PPETYVKVAG-HLRSFQNKKSLVAF 144 (270)
T ss_dssp C-CTTCEEEEEE-EEEEETTEEEEEEE
T ss_pred C-CCCCEEEEEE-EEEecCCeeEEEEE
Confidence 6 7899999975 88899999887654
No 35
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=89.90 E-value=2.6 Score=33.61 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=66.3
Q ss_pred eehhhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEE
Q 022219 11 VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMI 89 (300)
Q Consensus 11 ~~l~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~-~~~~LP~v~~~GDII~l~r~kv 89 (300)
.-|++++....+...|.+-|+|... +|--+.++|.|.|+.. .++|.||-+ .-|.--.. ++..--.+..+.-
T Consensus 120 llisevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvr 191 (213)
T 3u58_A 120 LLISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVR 191 (213)
T ss_dssp BCHHHHTTCCCSEEEEEEEEEEEEE------CSSCEEEEEECTTCSC-CEEEEECTTTTGGGTTCC-CTTCEEEEEEEEE
T ss_pred eehHHHHHHhHHHHHHHHHhhcccc------CCCceEEEeecccccc-eeEEEEchhHhhHhhhhc-chhhhhhHHHHHH
Confidence 3567777667788999999999743 5667899999999974 499999975 33555555 7788888888888
Q ss_pred EEEcCeEEEEeecC
Q 022219 90 KKHQAELSAVFYKD 103 (300)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (300)
|.||++.++-.+-.
T Consensus 192 qiyndevqlknnih 205 (213)
T 3u58_A 192 QIYNDEVQLKNNIH 205 (213)
T ss_dssp CCSSSSCEEECCTT
T ss_pred HHhhhhhhhhhhhh
Confidence 99999988876643
No 36
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=84.50 E-value=10 Score=29.63 Aligned_cols=83 Identities=17% Similarity=0.048 Sum_probs=53.7
Q ss_pred CCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCCcccEEEEEecC
Q 022219 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDR 245 (300)
Q Consensus 166 ~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~~l~V~~~~ 245 (300)
+=..+.+++.|+++. + ....+.+.+-|||+. . .+.+|.
T Consensus 35 ~i~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~--I--------------------------------------~~~~W~ 72 (136)
T 4gop_B 35 ELGQLTFVAVVRNIS-R-NATNVAYSVEDGTGQ--I--------------------------------------EVRQWL 72 (136)
T ss_dssp BCCEEEEEEEEEEEE-E-CSSEEEEEEECSSCE--E--------------------------------------EEEEEC
T ss_pred EEEEEEEEEEEEEEE-e-cCCeEEEEEECCCCC--E--------------------------------------EEEEec
Confidence 446789999999998 5 567889999999972 1 122222
Q ss_pred chhh---hhhcCCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCCCcc
Q 022219 246 SYEN---FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNV 294 (300)
Q Consensus 246 ~~~~---~~~~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~d~~ 294 (300)
..+. .....+++|++|++..- ++..+|..+-.. .+++.+.+-+..
T Consensus 73 ~~~~~~~~~~~~~~~g~yVrV~G~-v~~f~g~~qi~~---~~ir~v~d~Nei 120 (136)
T 4gop_B 73 DSSSDDSSKASEIRNNVYVRVLGT-LKSFQNRRSISS---GHMRPVIDYNEV 120 (136)
T ss_dssp C--------CCSCCTTCEEEEEEE-EEEETTEEEEEE---SEEEECSSHHHH
T ss_pred ccCCcccccccccCCCCEEEEEEE-EEEeCCEEEEEE---EEEEECCCccHH
Confidence 2111 02456899999999886 455566655433 467777665443
No 37
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=81.14 E-value=17 Score=28.11 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=52.8
Q ss_pred ceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCCcccEEEEEecCch
Q 022219 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSY 247 (300)
Q Consensus 168 ~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~~l~V~~~~~~ 247 (300)
..+.+++.|.++. + ....+.+.+-|||+. .. .+..|...
T Consensus 32 ~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~-~I--------------------------------------~~~~W~~~ 70 (132)
T 3kdf_D 32 SQVTIVGIIRHAE-K-APTNIVYKIDDMTAA-PM--------------------------------------DVRQWVDT 70 (132)
T ss_dssp CEEEEEEEEEEEE-E-CSSEEEEEEECSSSS-CE--------------------------------------EEEEEC--
T ss_pred EEEEEEEEEEEEE-E-cCCeEEEEEECCCCC-EE--------------------------------------EEEEEccC
Confidence 5689999999998 5 568999999999982 11 11112111
Q ss_pred hh--hhhcCCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCCCccc
Q 022219 248 EN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVV 295 (300)
Q Consensus 248 ~~--~~~~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~d~~v 295 (300)
+. .....+++|++|++..- ++..+|..+-.. .+++.+.+-+...
T Consensus 71 ~~~~~~~~~~~~g~yVrV~G~-l~~f~g~~qi~~---~~ir~v~d~Nei~ 116 (132)
T 3kdf_D 71 DDTSSENTVVPPETYVKVAGH-LRSFQNKKSLVA---FKIMPLEDMNEFT 116 (132)
T ss_dssp -------CCCCTTCEEEEEEE-EEEETTEEEEEE---EEEEECSSTHHHH
T ss_pred CCcccccccccCCCEEEEEEE-EEeECCEEEEEE---EEEEEcCCccHHH
Confidence 10 12456899999999876 555666655444 4677776655443
No 38
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=76.10 E-value=27 Score=30.51 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=54.6
Q ss_pred ceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCCcccEEEEEecCch
Q 022219 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSY 247 (300)
Q Consensus 168 ~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~~l~V~~~~~~ 247 (300)
..+.+++.|.++. . ....+.+.+-|+|+. . +.+.+|...
T Consensus 72 ~~V~ivG~V~~i~-~-~~~~~~~~L~D~TG~-~--------------------------------------I~~k~W~~~ 110 (270)
T 2pi2_A 72 SQVTIVGIIRHAE-K-APTNIVYKIDDMTAA-P--------------------------------------MDVRQWVDT 110 (270)
T ss_dssp SEEEEEEEEEEEE-E-CSSEEEEEEECSSSS-C--------------------------------------EEEEEECC-
T ss_pred EEEEEEEEEEEEE-e-ccceEEEEEECCCCC-E--------------------------------------EEEEEEcCc
Confidence 5789999999997 5 567889999999972 1 112222221
Q ss_pred hh--hhhcCCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCCCccc
Q 022219 248 EN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVV 295 (300)
Q Consensus 248 ~~--~~~~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~d~~v 295 (300)
+. .....+++|++|++.. +++..+|.++-... +|+++.+.+...
T Consensus 111 ~~~~~~~~~~~~G~yVrV~G-~v~~f~g~~qi~i~---~ir~v~d~nEi~ 156 (270)
T 2pi2_A 111 DDTSSENTVVPPETYVKVAG-HLRSFQNKKSLVAF---KIMPLEDMNEFT 156 (270)
T ss_dssp ------CCCCCTTCEEEEEE-EEEEETTEEEEEEE---EEEECSCTHHHH
T ss_pred CcccchhhcCCCCCEEEEEE-EEEecCCeeEEEEE---EEEecCCHhHHH
Confidence 10 1235689999999987 55556676666554 688877766543
No 39
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=70.13 E-value=6.7 Score=31.92 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=46.8
Q ss_pred CEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCCCCCCCEEEEeeEEEEEEcCeEEE
Q 022219 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRVLSPRDLILLKNVMIKKHQAELSA 98 (300)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~---~LP~v~~~GDII~l~r~kv~~~~g~~~~ 98 (300)
..|.+.|+|+.... +.+ ...++|=|.|- .-|.|.++.+... .+.....+|++|+++. .|+.|+|+.+.
T Consensus 48 ~~V~IvGiVv~~~~-~~~-----~~~ytIDD~TG--~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G-~v~~fr~~rqI 118 (159)
T 3kf6_A 48 RWIQIVGYIAAIDI-YEG-----KHVLTVDDCSG--MVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG-KINSFRSEVEL 118 (159)
T ss_dssp CEEEEEEEEEEEEE-ETT-----EEEEEEECSSS--CEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE-EEECSSSSCEE
T ss_pred EEEEEEEEEEEEEE-eCC-----EEEEEEecCCC--CeEEEEEEccCCCCcccccccCCCCCEEEEEE-EEEeeCCEEEE
Confidence 46899999999763 222 26667777663 2389999875411 1122237899999954 67888888776
Q ss_pred Eee
Q 022219 99 VFY 101 (300)
Q Consensus 99 ~~~ 101 (300)
...
T Consensus 119 ~~~ 121 (159)
T 3kf6_A 119 IAQ 121 (159)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 40
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=67.78 E-value=13 Score=28.43 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCEEEEee-------EEEEEEcCeEEEEeecC-ceEEEEEe
Q 022219 70 DQLPRVLSPRDLILLKN-------VMIKKHQAELSAVFYKD-SSSFALFD 111 (300)
Q Consensus 70 ~~LP~v~~~GDII~l~r-------~kv~~~~g~~~~~~~~~-~ss~~vf~ 111 (300)
.++|.+ .+||+|.+|= =++|.|.|-.-+..+.+ .++|.|=.
T Consensus 14 ~~iP~f-~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRk 62 (114)
T 3r8s_P 14 QDVPSF-RPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRK 62 (114)
T ss_dssp SCCCCC-CTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEE
T ss_pred cCCCcc-CCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEE
Confidence 679999 7999999973 24567777655544432 26777643
No 41
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=65.02 E-value=17 Score=36.75 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=50.7
Q ss_pred eehhhhhh----ccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 022219 11 VRIKELAM----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (300)
Q Consensus 11 ~~l~~~~~----~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r 86 (300)
+++.++.+ ...+-|+++|+|+..... +.-.+ .+-|.|.+..- +.|+++..-.|+ + .+|.+|-+.|
T Consensus 597 ~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~--~~~~~---~vylsD~~~nl--l~Ikf~~~l~eD---~-~~~~~va~sN 665 (738)
T 1miu_A 597 LHFSRLSDPAFQPPCSEVDVVGVVVSVVKP--IGLAP---LVYLSDECLNL--LVVKFGIDLNED---I-KPRVLIAASN 665 (738)
T ss_dssp CCSGGGGSSSCCTTTTEEEEEEEEEEEECC--TTSCC---EEEEECSSSCE--EEEEESSCCCSC---C-CSSCEEEEEE
T ss_pred eeHHHhcCccccCCCCceeEEEEEEEEccc--Ccccc---eEEEEcCCCcE--EEEEEecCchhh---C-ccccEEEEee
Confidence 34555653 356779999999998553 21123 45689999753 677777765565 6 7999999999
Q ss_pred EEEEEEc
Q 022219 87 VMIKKHQ 93 (300)
Q Consensus 87 ~kv~~~~ 93 (300)
++.+...
T Consensus 666 L~~r~~~ 672 (738)
T 1miu_A 666 LQCQPES 672 (738)
T ss_dssp EECCSCC
T ss_pred eEeeccc
Confidence 9998654
No 42
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=62.56 E-value=15 Score=27.44 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=25.0
Q ss_pred CCCCCCCCCEEEEeeE------EEEEEcCeEEEEeecC-ceEEEEEeCC
Q 022219 72 LPRVLSPRDLILLKNV------MIKKHQAELSAVFYKD-SSSFALFDGN 113 (300)
Q Consensus 72 LP~v~~~GDII~l~r~------kv~~~~g~~~~~~~~~-~ss~~vf~~~ 113 (300)
+|.+ .+||+|++|-- ++|.|.|-.-+..+.+ .++|.|=+-.
T Consensus 1 iP~f-~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~ 48 (98)
T 2ftc_K 1 IPEF-YVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVI 48 (98)
T ss_pred CCcc-CCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEec
Confidence 5888 79999999822 2456666544444433 2667764443
No 43
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=62.33 E-value=12 Score=39.42 Aligned_cols=84 Identities=15% Similarity=0.289 Sum_probs=60.4
Q ss_pred ceeehhhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCC---CCCCCCCCCEEEEe
Q 022219 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQ---LPRVLSPRDLILLK 85 (300)
Q Consensus 9 ~y~~l~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~---LP~v~~~GDII~l~ 85 (300)
..++|.++.+.. ..|-+-|-|-+... +.+|.+-...+|.|+|-+. +|.|++|..+.+. +-.+ ..|+-|+++
T Consensus 6 ~~~~~~~~~~~~-~~~~~~g~v~~~~~-~~~~~~~~~~~~~~td~~~---~~~~k~f~~~~~~~~~~~~~-~~g~~~~~~ 79 (1041)
T 3f2b_A 6 PVRRLETIVEEE-RRVVVQGYVFDAEV-SELKSGRTLLTMKITDYTN---SILVKMFSRDKEDAELMSGV-KKGMWVKVR 79 (1041)
T ss_dssp -CBCGGGCCSCE-EEEEEEEEEEEEEE-EECTTSCEEEEEEEECSSC---EEEEEEECSSHHHHHHHHTC-CTTCEEEEE
T ss_pred CcccHHHhhccc-ceEEEEEEEEEEEE-EEccCCCEEEEEEEEeCCC---CEEEEEeecccchHHHHhcC-CCCCEEEEE
Confidence 456888886432 46888999887643 4556566889999999854 4999999865443 3456 689999997
Q ss_pred -eEEEEEEcCeEEE
Q 022219 86 -NVMIKKHQAELSA 98 (300)
Q Consensus 86 -r~kv~~~~g~~~~ 98 (300)
++....|.++...
T Consensus 80 g~~~~d~~~~~~~~ 93 (1041)
T 3f2b_A 80 GSVQNDTFVRDLVI 93 (1041)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEeccCCcceEE
Confidence 6677777776543
No 44
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=61.24 E-value=22 Score=37.40 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=29.0
Q ss_pred cccccccC-CceEeEEEEEEEEEe-eCCCC--eEEEEEEcCCCC
Q 022219 159 LSLKDISE-HRYFDLVCKVFHVSY-DDSKG--LWMLFVWDGTDV 198 (300)
Q Consensus 159 ~~L~di~~-~~f~Dl~~qVv~~~~-~~~~~--~~~L~VwDgT~n 198 (300)
..|++|.+ ..-+-+.++|.++-. +..++ .++++|||||+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~ 51 (1041)
T 3f2b_A 8 RRLETIVEEERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNS 51 (1041)
T ss_dssp BCGGGCCSCEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCE
T ss_pred ccHHHhhcccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCC
Confidence 67888864 566788889988763 33343 568899999963
No 45
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=57.08 E-value=25 Score=28.04 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCEEEEeeE-------EEEEEcCeEEEEeecC-ceEEEEE
Q 022219 70 DQLPRVLSPRDLILLKNV-------MIKKHQAELSAVFYKD-SSSFALF 110 (300)
Q Consensus 70 ~~LP~v~~~GDII~l~r~-------kv~~~~g~~~~~~~~~-~ss~~vf 110 (300)
.++|.+ .+||+|.+|=- ++|.|.|-.-+..+.+ .++|.|=
T Consensus 17 ~diP~F-~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVR 64 (146)
T 3v2d_T 17 TDLPEF-RPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVR 64 (146)
T ss_dssp CCCCCC-CTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEE
T ss_pred ccCCCc-CCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEE
Confidence 679999 79999999743 2466766544444432 2667763
No 46
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=53.61 E-value=10 Score=40.67 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=36.9
Q ss_pred eehhhhhh-----ccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 022219 11 VRIKELAM-----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (300)
Q Consensus 11 ~~l~~~~~-----~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (300)
+++.++.. ..++.|.+.|+|+..+.| .|+.++-++-++|-|.+-. +.|.+|.+..+........|.+++++
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~-~Tk~G~~maf~tleD~tg~---~evvvf~~~~~~~~~~l~~~~~~~v~ 1102 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRK-PTRSGGMMARFTLSDETGA---LEVVVFGRAYEGVSPKLKEDIPLLVL 1102 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC-------------CEEEEETTEE---EEEC-------------CTTCEEEEE
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEe-ecCCCCeEEEEEEEECCCC---EEEEEcHHHHHHHHHHhccCCEEEEE
Confidence 45666642 246779999999999876 4555677889999998753 89999988777777765566676664
Q ss_pred eEEEEE
Q 022219 86 NVMIKK 91 (300)
Q Consensus 86 r~kv~~ 91 (300)
.+++.
T Consensus 1103 -G~v~~ 1107 (1220)
T 2hpi_A 1103 -AEVEK 1107 (1220)
T ss_dssp -EEEC-
T ss_pred -EEEEE
Confidence 46653
No 47
>1kxl_A Cell division control protein 13; DNA-binding domain, telomere, single-stranded DNA, OB fold, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: b.40.4.3 PDB: 1s40_A
Probab=42.14 E-value=90 Score=26.09 Aligned_cols=110 Identities=13% Similarity=0.163 Sum_probs=63.2
Q ss_pred ccccccc----CCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhhhhcCCC
Q 022219 159 LSLKDIS----EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFP 234 (300)
Q Consensus 159 ~~L~di~----~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 234 (300)
...+|+. +..|+-.++=+|...+. .++-..+-+||.|.||-...+.... ..-.|+. .|+.+.
T Consensus 13 ikfkdl~~~~~e~~~v~~~gLLVs~~~~-~~~~~~~~FTDFT~N~~~q~y~fD~------fl~dY~n-kL~~dE------ 78 (199)
T 1kxl_A 13 IEFCQLGLDTFETKYITMFGMLVSCSFD-KPAFISFVFSDFTKNDIVQNYLYDR------YLIDYEN-KLELNE------ 78 (199)
T ss_dssp CCTTTCCCCSSCCEEEEECCCCCEEECC-CTTEEEEEECCSSCCCCCCCCCCCC------CCSCSSS-CCCTTT------
T ss_pred eEEeccccccCCceEEEEEEEEEEEecC-CCCeEEEEEeeccCCccccccccch------hhhhhhc-CCCCCC------
Confidence 4455553 56788888889998843 6778889999999999754333210 0011111 111110
Q ss_pred cccEEEE-EecCchhhh------------------hhcCCCCCcEEEEeccEEEeeCcEEEEEEeeCCce
Q 022219 235 VGTVLRV-STDRSYENF------------------GRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKI 285 (300)
Q Consensus 235 ~G~~l~V-~~~~~~~~~------------------~~~~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~ 285 (300)
.++| .|-++.+++ ...++..--.|.=-++++|+.+|.|+|..++-.=|
T Consensus 79 ---~~~v~mY~n~fe~f~~~~~~~ygy~L~e~~~~g~~Nvs~~gIVckltLK~kLYqg~Ln~i~rd~e~I 145 (199)
T 1kxl_A 79 ---GFKAIMYKNQFETFDSKLRKIFNNGLRDLQNGRDENLSQYGIVCKMNIKVKMYNGKLNAIVRECEPV 145 (199)
T ss_dssp ---CEEEEEEHHHHHHHHHHHHTTSSSCHHHHTCSTTCCCCSSCCCEEEEEEEECSSSSCEEEECCCEEC
T ss_pred ---eEEEEEhHHHHHHHHHHHHHHHCccHHHHhcCCCccccceeEEEEEEEEeeeecccccceeecceee
Confidence 1122 222222211 12344444556666889999999999998876543
No 48
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=39.49 E-value=46 Score=22.65 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=24.2
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCC
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~ 291 (300)
.++.||.|.+.. +.++|.|+|......+.-+++.+
T Consensus 23 s~~~Gd~i~v~~---~~~~gWw~g~~~~~g~~G~~P~~ 57 (73)
T 2lcs_A 23 RLAEGDIVFISY---KHGQGWLVAENESGSKTGLVPEE 57 (73)
T ss_dssp CBCTTCEEEEEE---EETTTEEEEECTTSSCEEEEEST
T ss_pred CCcCCCEEEEEE---EcCCCEEEEEECCCCCEEEeeHH
Confidence 479999998754 46688999988754454444433
No 49
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=36.17 E-value=48 Score=21.06 Aligned_cols=33 Identities=27% Similarity=0.164 Sum_probs=23.4
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcC
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFS 289 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~ 289 (300)
.++.||.|.+.. +.++|.|+|......+.-+++
T Consensus 19 s~~~Gd~i~v~~---~~~~gW~~g~~~~~g~~G~~P 51 (59)
T 1yn8_A 19 RLAEGDIVFISY---KHGQGWLVAENESGSKTGLVP 51 (59)
T ss_dssp CBCTTCEEEEEE---EEETTEEEEECTTSSCEEEEE
T ss_pred CCCCCCEEEEEE---cCCCCeEEEEECCCCCEEEEe
Confidence 478999998754 457889999877545544444
No 50
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=35.87 E-value=45 Score=27.04 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=49.2
Q ss_pred CEEEEEEEEEecCCceecCCCceEEEEEEEe-CCCC-----------CCCeEEEEecCCCCCCCCCCCCCCEEEEe-eEE
Q 022219 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVD-DSQQ-----------SPELLVNIFTSSIDQLPRVLSPRDLILLK-NVM 88 (300)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D-~S~~-----------~~gl~v~iF~~~~~~LP~v~~~GDII~l~-r~k 88 (300)
.+|.++|-|..--..+.|....-.++|+|.= .+.. ..-+.|.+|.+..+.+-.-...||-|.+. +++
T Consensus 5 N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~ 84 (168)
T 3afp_A 5 TTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLK 84 (168)
T ss_dssp CEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEEEE
Confidence 4688999988754555665556778899963 3221 11399999987555554423689988887 889
Q ss_pred EEEEcC
Q 022219 89 IKKHQA 94 (300)
Q Consensus 89 v~~~~g 94 (300)
...|.+
T Consensus 85 ~~~~~d 90 (168)
T 3afp_A 85 QRSFET 90 (168)
T ss_dssp EEEEC-
T ss_pred eeeEEC
Confidence 999974
No 51
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=31.97 E-value=37 Score=27.69 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCEEEEeeE-------EEEEEcCeEEEEeecC-ceEEEEEe
Q 022219 70 DQLPRVLSPRDLILLKNV-------MIKKHQAELSAVFYKD-SSSFALFD 111 (300)
Q Consensus 70 ~~LP~v~~~GDII~l~r~-------kv~~~~g~~~~~~~~~-~ss~~vf~ 111 (300)
.++|.+ .+||+|++|=- ++|.|.|-.-+..+.+ .++|.|=.
T Consensus 22 ~diP~F-r~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRk 70 (166)
T 2zjr_M 22 RQLPDF-RPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRK 70 (166)
T ss_dssp CCCCCC-SSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEE
T ss_pred cCCCCc-CCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEE
Confidence 579998 79999999822 3567777655544432 26777643
No 52
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.22 E-value=68 Score=21.14 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=24.6
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCC
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~ 291 (300)
.++.||.|.+.. +.++|.|+|....+.+.-+++.+
T Consensus 25 s~~~Gd~i~v~~---~~~~gW~~g~~~~~g~~G~~P~~ 59 (70)
T 2ct3_A 25 ELREGDRVDVMQ---QCDDGWFVGVSRRTQKFGTFPGN 59 (70)
T ss_dssp CBCTTEEEEEEE---ECSSSCEEEEESSSCCEEEECTT
T ss_pred cCCCCCEEEEEE---ECCCCEEEEEECCCCCEEEechH
Confidence 478999998855 34678999988755555555543
No 53
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=30.72 E-value=57 Score=21.81 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=26.0
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCCC
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDND 292 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~d 292 (300)
.++.||.|.+.. +.++|.|+|....+.+.-+.+.+.
T Consensus 24 s~~~Gd~i~v~~---~~~~gWw~g~~~~~g~~G~~P~ny 59 (65)
T 2lj0_A 24 ELRDGDIVDVME---KCDDGWFVGTSRRTKQFGTFPGNY 59 (65)
T ss_dssp CBCTTCEEEEEE---ECTTSEEEEEETTTCCEEEEETTS
T ss_pred CCCCCCEEEEeE---eCCCCEEEEEECCCCCEEEEehhH
Confidence 589999987642 456889999887766666665543
No 54
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=30.45 E-value=77 Score=20.84 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=24.4
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEEeeCC---ceEEcCC
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLLQSSS---KIRLFSD 290 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l~~~s---k~~~l~~ 290 (300)
.++.||.|.+.. +.++|.|+|....+. +.-+++.
T Consensus 25 sf~~Gd~i~v~~---~~~~~Ww~g~~~~~g~~~~~G~fP~ 61 (68)
T 1tg0_A 25 NFEKDQEIIVTS---VEDAEWYFGEYQDSNGDVIEGIFPK 61 (68)
T ss_dssp CBCTTCEEEEEE---ECSSSEEEEEEECTTSCEEEEEEEG
T ss_pred CCCCCCEEEEEE---ecCCCeEEEEECCCCCCCEEEEEch
Confidence 479999998764 456889999988755 5545443
No 55
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=28.42 E-value=2.1e+02 Score=22.31 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=46.5
Q ss_pred ceeehhhhhh---------ccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 022219 9 GIVRIKELAM---------HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPR 79 (300)
Q Consensus 9 ~y~~l~~~~~---------~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~G 79 (300)
-|.+.+++.+ ..+..+.|-|.|+.=+.-+ . ...-.++|.|+|+. ...+.|.+=. .||...+.|
T Consensus 11 ~f~tpsei~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r-~-~~~~~v~F~vtD~~--~~~v~V~Y~G----ilPDlFrEG 82 (136)
T 1j6q_A 11 LFYTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVR-D-PNSLHVQFAVHDSL--GGEILVTYDD----LLPDLFREG 82 (136)
T ss_dssp CEECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEE-C-TTSSCEEEEEECTT--CCCEEEEECS----CCTTSCCSS
T ss_pred EeeCHHHHHcCcccccccCCCCCEEEEeEEEeCCcEEe-c-CCCCEEEEEEEcCC--CCEEEEEECC----CCCccccCC
Confidence 3666777763 2457899999998765422 2 23457899999952 2337776533 589988999
Q ss_pred CEEEEe
Q 022219 80 DLILLK 85 (300)
Q Consensus 80 DII~l~ 85 (300)
.-|.+.
T Consensus 83 qgVVa~ 88 (136)
T 1j6q_A 83 QGIVAQ 88 (136)
T ss_dssp SEEEEE
T ss_pred CeEEEE
Confidence 866653
No 56
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=28.36 E-value=54 Score=30.63 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=46.2
Q ss_pred eehhhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCC--CCCCCCCCCCCEEEEeeE
Q 022219 11 VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSI--DQLPRVLSPRDLILLKNV 87 (300)
Q Consensus 11 ~~l~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~--~~LP~v~~~GDII~l~r~ 87 (300)
.+|.++. ..+.+-|.|.|.+. |+..+|.... |+|.|.+ ..|.|..|.|+. ..+-.-..+||.|.+..-
T Consensus 276 ~~i~~~~--~~~~~~v~G~V~~~--P~~~~GGHV~--f~l~d~~---~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~ 345 (402)
T 3au7_A 276 EEVHRLE--NYRSYRLRGRVTLE--PYDIEGGHVF--FEIDTKF---GSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGS 345 (402)
T ss_dssp GGCSSCC--TTCEEEEEEEEEEE--EEEETTTEEE--EEEEETT---EEEEEEECGGGTTHHHHHTTCCTTCEEEEEEE
T ss_pred ccccccc--cCceEEEEEEEecC--cEeccCceEE--EEEEcCC---CEEEEEEEccchHHHHHHhcCCCCCEEEEEEe
Confidence 3455554 56789999999986 5666777665 4677852 249999999643 334433368998887654
No 57
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=27.58 E-value=81 Score=20.01 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=17.5
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEE
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLL 279 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l 279 (300)
.++.||.|.+.. +.++|.|+|..
T Consensus 22 s~~~Gd~i~v~~---~~~~~Ww~g~~ 44 (59)
T 2g6f_X 22 SFSKGDVIHVTR---VEEGGWWEGTH 44 (59)
T ss_dssp CBCTTCEEEEEE---ECTTSEEEEEE
T ss_pred CCCCCCEEEEEE---ecCCCEEEEEE
Confidence 478999998764 44678899875
No 58
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}
Probab=27.35 E-value=78 Score=20.88 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=25.3
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCCC
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~~ 291 (300)
.++.||.|.+.. +.++|.|+|......+.-+++.+
T Consensus 25 s~~~Gd~i~v~~---~~~~~Ww~g~~~~~g~~G~~P~~ 59 (70)
T 2ecz_A 25 SFRKGERITLLR---QVDENWYEGRIPGTSRQGIFPIT 59 (70)
T ss_dssp CCCTTCBCEEEE---EEETTEEEEEETTTTEEEEECTT
T ss_pred CCCCCCEEEEEE---ecCCCeEEEEECCCCCEEEEchH
Confidence 479999988875 45688999988765555555543
No 59
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=25.72 E-value=1e+02 Score=24.29 Aligned_cols=134 Identities=16% Similarity=0.254 Sum_probs=84.6
Q ss_pred EEEEEEEEecCCceecC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEEEEEcCeEEEEeec
Q 022219 24 VNLLGVVLEFSIPRKSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYK 102 (300)
Q Consensus 24 vnviGVVvd~~~P~~tr-G~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r~kv~~~~g~~~~~~~~ 102 (300)
..+=|-|+.-+...+.. .+.|. -++--|.... .|.+.+..+-....-.+ .+|.--.+-.-.++.|++.+.+-+..
T Consensus 26 fkfegrvvyksstfqnqqdskyf-fitaqdannq--einlsfwqkvdqsyqtl-kvgqyyyfiggevkqfknnlelkfkf 101 (213)
T 3u58_A 26 FKFEGRVVYKSSTFQNQQDSKYF-FITAQDANNQ--EINLSFWQKVDQSYQTL-KVGQYYYFIGGEVKQFKNNLELKFKF 101 (213)
T ss_dssp EEEEEEEEEECCCBCCSTTCCBE-EEEEECTTSC--EEEEEECSSHHHHHHHC-CTTCEEEEESCEEEECSSSEEEEECS
T ss_pred EEeeeEEEEeeccccccccccEE-EEEeecCCCc--eechHHHHHhhhhhhee-eeceEEEEEcccHhhhccceEEEEec
Confidence 66788888766655543 23333 2355565553 37777776532333344 68999999899999999888777653
Q ss_pred CceEEEEEeCCCCCCccccccCCCCcCCCHHHHHHHHHHHHhhhcCccccCCcccccccccc--cCCceEeEEEEEEEEE
Q 022219 103 DSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDI--SEHRYFDLVCKVFHVS 180 (300)
Q Consensus 103 ~~ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~~~~~L~di--~~~~f~Dl~~qVv~~~ 180 (300)
+ .+-+.+.. .+ .+|+ ++ . .+|+++ ...+|..+.+||+++.
T Consensus 102 g--dyqiipke---tl---ggsg---------------------------gs-t--llisevlktskqylsvlaqvvdiq 143 (213)
T 3u58_A 102 G--DYQIIPKE---TL---GGSG---------------------------GS-T--LLISEVLKTSKQYLSVLAQVVDIQ 143 (213)
T ss_dssp S--CCEEEEST---TT---TCST---------------------------TC-C--BCHHHHTTCCCSEEEEEEEEEEEE
T ss_pred C--ceEEechh---hc---CCCC---------------------------Cc-e--eehHHHHHHhHHHHHHHHHhhccc
Confidence 3 23333221 00 1111 11 1 345555 3578999999999999
Q ss_pred eeCCCCeEEEEEEcCCCCCCC
Q 022219 181 YDDSKGLWMLFVWDGTDVPPL 201 (300)
Q Consensus 181 ~~~~~~~~~L~VwDgT~n~~~ 201 (300)
. .+....|.+-|-+.|..+
T Consensus 144 -s-sdknirlkicdnscnqel 162 (213)
T 3u58_A 144 -S-SDKNIRLKICDNSCNQEL 162 (213)
T ss_dssp -E-CSSCEEEEEECTTCSCCE
T ss_pred -c-CCCceEEEeeccccccee
Confidence 5 567889999998877654
No 60
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=24.52 E-value=95 Score=20.26 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=24.9
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcCC
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSD 290 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~~ 290 (300)
.++.||.+.+.. +.++|.|+|......+.-+++.
T Consensus 24 s~~~Gd~i~v~~---~~~~~Ww~g~~~~~g~~G~~P~ 57 (67)
T 2o9s_A 24 SFRKGERITLLR---QVDENWYEGRIPGTSRQGIFPI 57 (67)
T ss_dssp CBCTTCEEEEEE---ECSSSEEEEECTTSSCEEEEEG
T ss_pred CCCCCCEEEEEE---ecCCCEEEEEECCCCCEEEECh
Confidence 478999999875 4568899998877555555443
No 61
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=23.47 E-value=67 Score=20.35 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=22.1
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcC
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFS 289 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~ 289 (300)
.++.||.|.+.. +.++|.|+|....+.+.-+++
T Consensus 18 s~~~Gd~i~v~~---~~~~~Ww~g~~~~~g~~G~~P 50 (58)
T 1jo8_A 18 TFVENDKIINIE---FVDDDWWLGELEKDGSKGLFP 50 (58)
T ss_dssp CBCTTCEEEEEE---CCSSSEEEEEETTTCCEEEEE
T ss_pred ccCCCCEEEEEE---ecCCCcEEEEECCCCCEEEec
Confidence 478888888755 356788888877544544444
No 62
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=23.14 E-value=2.7e+02 Score=21.72 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=44.5
Q ss_pred eeehhhhhh---------ccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 022219 10 IVRIKELAM---------HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRD 80 (300)
Q Consensus 10 y~~l~~~~~---------~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GD 80 (300)
|.+.+++.+ ..++.+-|-|.|..=+. .+. +..-.++|.|+|. ...+.|.+=. .||..++.|.
T Consensus 8 F~tPSEi~~~~~~~~~~~~~g~~iRvgG~V~~GSv-~r~-~~~~~v~F~vtD~---~~~v~V~Y~G----ilPDlFrEGq 78 (136)
T 1sr3_A 8 FYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSV-QRD-PNSLKVTFTIYDA---EGSVDVSYEG----ILPDLFREGQ 78 (136)
T ss_dssp CBCTTTTTSCSTTTSCCCCTTSEEEEEEEECTTTC-EEC-SSSSEEEEEEECS---SCEEEEEEES----CCCTTCCTTS
T ss_pred EeCHHHHhcCcccccccCCCCCEEEEeeEEeCCcE-EEc-CCCCEEEEEEEeC---CcEEEEEECC----CCCccccCCC
Confidence 445566653 24578999999996544 222 2456899999995 2336666544 5899889998
Q ss_pred EEEE
Q 022219 81 LILL 84 (300)
Q Consensus 81 II~l 84 (300)
-|..
T Consensus 79 gVVa 82 (136)
T 1sr3_A 79 GVVV 82 (136)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6655
No 63
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=22.50 E-value=82 Score=21.27 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=20.2
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEEee
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLLQS 281 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l~~ 281 (300)
.++.||.|.+.+ +.+.|.|+|.+..
T Consensus 28 sf~~Gd~i~v~~---~~~~~Ww~g~~~~ 52 (76)
T 2ed1_A 28 TFIEGEVIIVTG---EEDQEWWIGHIEG 52 (76)
T ss_dssp CCCSSCEEEESS---CCSSSEEEEEETT
T ss_pred CcCCCCEEEEEE---ecCCCEEEEEECC
Confidence 489999999976 4568899998764
No 64
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=21.57 E-value=1.3e+02 Score=18.98 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=17.9
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEE
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLL 279 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l 279 (300)
.++.||.|.+.. +.++|.|+|..
T Consensus 23 s~~~Gd~i~v~~---~~~~~Ww~g~~ 45 (60)
T 2xmf_A 23 SFNANDIIDIIK---EDPSGWWTGRL 45 (60)
T ss_dssp CBCTTCEEEEEE---ECTTSEEEEEE
T ss_pred CCCCCCEEEEEE---ecCCCEEEEEE
Confidence 478999988865 33678899987
No 65
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=20.40 E-value=1.6e+02 Score=22.91 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=47.9
Q ss_pred EEEEEEEEEecCCceecCCCceEEEEEEEeCC-CC----------CCCeEEEEecCCCCCCCC-CCCCCCEEEE-eeEEE
Q 022219 23 KVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDS-QQ----------SPELLVNIFTSSIDQLPR-VLSPRDLILL-KNVMI 89 (300)
Q Consensus 23 ~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S-~~----------~~gl~v~iF~~~~~~LP~-v~~~GDII~l-~r~kv 89 (300)
+|.++|-|..--..+.|....-.++|+|.=.+ .. ..-+.|.+|.+..+.+-. + ..||-|.+ =+++.
T Consensus 7 ~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l-~KG~~V~V~G~L~~ 85 (145)
T 1qvc_A 7 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYL-RKGSQVYIEGQLRT 85 (145)
T ss_dssp EEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHC-CTTCEEEEEEEEEE
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhc-CCCCEEEEEEEEEe
Confidence 57788888765444555555678889995333 21 123999999875565554 5 68997777 57788
Q ss_pred EEEcC
Q 022219 90 KKHQA 94 (300)
Q Consensus 90 ~~~~g 94 (300)
..|.+
T Consensus 86 ~~~~d 90 (145)
T 1qvc_A 86 RKWTD 90 (145)
T ss_dssp EEECS
T ss_pred eEEEC
Confidence 88864
No 66
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=20.38 E-value=67 Score=22.14 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=21.3
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEEeeCCceEEcC
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFS 289 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l~~~sk~~~l~ 289 (300)
.++.||.|.+.+ +.++|.|+|....+.+.-+++
T Consensus 23 s~~~Gd~i~vl~---~~~~~Ww~g~~~~~g~~G~~P 55 (79)
T 3cqt_A 23 SFHKGEKFQILN---SSEGDWWEARSLTTGETGYIP 55 (79)
T ss_dssp CBCTTCEEEEEE---CTTSSEEEEEETTTCCEEEEE
T ss_pred CCCCCCEEEEEE---ecCCCeEEEEECCCCCEEEee
Confidence 478899888765 345778888774444444443
No 67
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=20.17 E-value=1.8e+02 Score=20.28 Aligned_cols=56 Identities=14% Similarity=0.258 Sum_probs=36.7
Q ss_pred CEEEEEEEEEecCCceecCCCceEEEEEEEeCC---CCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 022219 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDS---QQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (300)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S---~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r 86 (300)
+.+.+-|+|....+-. | +++|.-.- +.|++.+..+=-++...|..+ .+||-|++.=
T Consensus 6 ~~~~~~G~V~~id~~~---~-----~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~l-k~Gd~V~F~~ 64 (80)
T 2qcp_X 6 QVISATGVVKGIDLES---K-----KITIHHDPIAAVNWPEMTMRFTITPQTKMSEI-KTGDKVAFNF 64 (80)
T ss_dssp CCEEEEEEEEEEETTT---T-----EEEEEECCBGGGTBCSEEEEEECCTTCEECCC-CTTCEEEEEE
T ss_pred ceEEEEEEEEEEcCCC---C-----EEEEEcCCcccCCCCceEEEEEccChhhhhcC-CCCCEEEEEE
Confidence 3456778887765421 1 14555333 337889988655666778888 7999998754
No 68
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=20.12 E-value=1.7e+02 Score=19.19 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=23.5
Q ss_pred CCCCCcEEEEeccEEEeeCcEEEEEEeeC-Cce---EEcCCC
Q 022219 254 FTATGKWVRIRNMSCQVSSGMWHGLLQSS-SKI---RLFSDN 291 (300)
Q Consensus 254 ~lk~G~wv~l~Nv~~k~~~g~leg~l~~~-sk~---~~l~~~ 291 (300)
.++.||.|.+ + +.++|.|+|....+ .+. -+++.+
T Consensus 28 s~~~Gd~i~v-~---~~~~~Ww~g~~~~~~g~~~~~G~~P~~ 65 (72)
T 2kgt_A 28 SFRAGDVFHV-A---RKEEQWWWATLLDEAGGAVAQGYVPHN 65 (72)
T ss_dssp BCCTTCCEEE-E---EECSSCEEEEEECTTSCEEEEEEECTT
T ss_pred CCCCCCEEEE-e---eCCCCEEEEEEcCCCCCEeCCcEEcHh
Confidence 4899999998 4 34688999988643 444 455543
Done!