Query 022220
Match_columns 300
No_of_seqs 132 out of 1707
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 08:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 7.4E-33 1.6E-37 250.3 24.8 254 8-268 71-336 (358)
2 TIGR00817 tpt Tpt phosphate/ph 100.0 5E-28 1.1E-32 215.9 19.8 232 6-264 56-297 (302)
3 PRK11453 O-acetylserine/cystei 100.0 4.3E-27 9.3E-32 209.5 22.3 224 17-263 60-290 (299)
4 PF06027 DUF914: Eukaryotic pr 100.0 9.9E-27 2.2E-31 206.5 22.9 236 11-266 75-311 (334)
5 PRK11272 putative DMT superfam 100.0 1.3E-26 2.7E-31 205.8 23.0 224 10-263 63-288 (292)
6 TIGR00950 2A78 Carboxylate/Ami 100.0 1.3E-26 2.9E-31 202.2 22.1 216 11-255 42-259 (260)
7 PRK11689 aromatic amino acid e 99.9 2.2E-26 4.7E-31 204.6 20.4 223 18-263 63-290 (295)
8 PRK10532 threonine and homoser 99.9 1.1E-25 2.3E-30 199.9 23.2 221 9-264 65-285 (293)
9 TIGR03340 phn_DUF6 phosphonate 99.9 8.2E-25 1.8E-29 193.2 21.6 223 7-257 55-280 (281)
10 PRK15430 putative chlorampheni 99.9 5.3E-24 1.2E-28 189.3 22.2 216 12-261 70-286 (296)
11 PTZ00343 triose or hexose phos 99.9 3.4E-24 7.3E-29 194.5 20.9 223 12-261 111-349 (350)
12 COG0697 RhaT Permeases of the 99.9 8.1E-21 1.7E-25 167.7 21.7 216 16-261 70-288 (292)
13 COG5006 rhtA Threonine/homoser 99.9 2.2E-20 4.8E-25 154.9 16.5 224 3-260 59-282 (292)
14 KOG4510 Permease of the drug/m 99.9 8.3E-23 1.8E-27 170.3 1.1 232 13-262 95-327 (346)
15 KOG2765 Predicted membrane pro 99.9 2.9E-20 6.2E-25 162.2 16.2 221 26-264 170-394 (416)
16 PF08449 UAA: UAA transporter 99.8 7.3E-19 1.6E-23 156.8 22.0 238 11-265 60-302 (303)
17 TIGR00688 rarD rarD protein. T 99.8 2.1E-19 4.6E-24 156.6 17.9 186 15-235 70-255 (256)
18 COG2962 RarD Predicted permeas 99.8 5.3E-17 1.1E-21 138.3 20.3 219 11-263 68-286 (293)
19 TIGR00776 RhaT RhaT L-rhamnose 99.8 3E-17 6.6E-22 145.3 19.5 220 12-260 56-288 (290)
20 KOG1441 Glucose-6-phosphate/ph 99.7 2.7E-17 5.8E-22 144.7 10.6 227 11-268 79-315 (316)
21 KOG1580 UDP-galactose transpor 99.7 3.7E-16 8E-21 128.5 15.1 226 15-260 85-313 (337)
22 KOG2766 Predicted membrane pro 99.7 1.1E-17 2.3E-22 139.1 5.0 225 13-261 76-300 (336)
23 PF04142 Nuc_sug_transp: Nucle 99.7 5.6E-15 1.2E-19 127.1 19.8 230 11-251 13-244 (244)
24 KOG2234 Predicted UDP-galactos 99.6 9.5E-14 2.1E-18 121.7 21.5 238 11-264 88-326 (345)
25 COG2510 Predicted membrane pro 99.6 2.7E-14 5.8E-19 106.8 12.6 134 123-259 5-138 (140)
26 KOG1443 Predicted integral mem 99.6 9.4E-14 2E-18 118.7 15.4 223 9-258 77-313 (349)
27 KOG1581 UDP-galactose transpor 99.5 1.7E-13 3.8E-18 117.1 15.0 236 11-264 79-317 (327)
28 KOG1444 Nucleotide-sugar trans 99.5 1.1E-12 2.3E-17 113.5 17.7 236 7-269 69-309 (314)
29 PF00892 EamA: EamA-like trans 99.5 9.3E-14 2E-18 107.0 8.9 125 131-259 1-125 (126)
30 KOG3912 Predicted integral mem 99.4 7.9E-13 1.7E-17 111.7 10.5 228 16-259 87-333 (372)
31 KOG1442 GDP-fucose transporter 99.4 4.3E-13 9.2E-18 112.9 4.7 238 10-271 97-338 (347)
32 PF03151 TPT: Triose-phosphate 99.3 8.4E-11 1.8E-15 94.1 12.5 138 122-260 1-153 (153)
33 KOG4314 Predicted carbohydrate 99.3 4.8E-11 1E-15 96.1 10.2 210 26-260 64-276 (290)
34 PRK15430 putative chlorampheni 99.2 5E-10 1.1E-14 99.7 13.9 139 117-259 4-144 (296)
35 KOG1582 UDP-galactose transpor 99.2 2.2E-10 4.7E-15 96.6 10.4 230 7-262 101-334 (367)
36 KOG1583 UDP-N-acetylglucosamin 99.2 1E-09 2.2E-14 92.9 14.3 240 8-261 60-315 (330)
37 PF06800 Sugar_transport: Suga 99.2 2.9E-09 6.2E-14 91.8 16.9 226 7-257 35-268 (269)
38 TIGR03340 phn_DUF6 phosphonate 99.1 1.4E-09 3E-14 96.1 14.9 133 123-260 3-135 (281)
39 COG5070 VRG4 Nucleotide-sugar 99.1 8.7E-11 1.9E-15 96.3 6.6 236 12-267 65-303 (309)
40 TIGR00688 rarD rarD protein. T 99.1 1.3E-09 2.9E-14 94.9 13.3 136 121-259 2-141 (256)
41 PF05653 Mg_trans_NIPA: Magnes 99.0 5.9E-09 1.3E-13 92.5 13.7 230 17-263 51-295 (300)
42 PLN00411 nodulin MtN21 family 98.9 2.1E-08 4.5E-13 91.3 14.1 139 121-261 13-157 (358)
43 PF13536 EmrE: Multidrug resis 98.9 1E-09 2.2E-14 83.4 4.6 76 11-93 30-106 (113)
44 TIGR00803 nst UDP-galactose tr 98.9 6.7E-09 1.5E-13 88.5 10.0 206 41-258 4-222 (222)
45 PRK02971 4-amino-4-deoxy-L-ara 98.9 2.8E-08 6E-13 76.9 12.1 121 122-263 3-125 (129)
46 PF13536 EmrE: Multidrug resis 98.9 1.2E-08 2.6E-13 77.4 8.9 107 156-263 3-109 (113)
47 TIGR00950 2A78 Carboxylate/Ami 98.9 2.9E-08 6.3E-13 86.4 11.9 119 133-260 1-119 (260)
48 COG2510 Predicted membrane pro 98.9 9.9E-10 2.1E-14 82.5 2.1 77 10-92 62-138 (140)
49 PF00892 EamA: EamA-like trans 98.8 4.6E-09 9.9E-14 80.6 5.3 79 7-91 45-124 (126)
50 PRK11272 putative DMT superfam 98.8 1E-07 2.2E-12 84.7 14.0 131 123-260 10-141 (292)
51 PRK11453 O-acetylserine/cystei 98.8 1.9E-07 4.1E-12 83.2 13.7 126 123-260 6-132 (299)
52 PRK11689 aromatic amino acid e 98.7 4.5E-07 9.9E-12 80.6 13.7 129 122-260 5-137 (295)
53 KOG2922 Uncharacterized conser 98.6 2.2E-07 4.7E-12 80.8 10.2 227 17-263 65-309 (335)
54 PTZ00343 triose or hexose phos 98.6 1.1E-06 2.4E-11 80.1 15.2 128 130-259 58-185 (350)
55 TIGR00817 tpt Tpt phosphate/ph 98.6 8E-07 1.7E-11 79.3 13.9 120 135-258 16-135 (302)
56 COG2962 RarD Predicted permeas 98.6 5.2E-07 1.1E-11 77.6 11.8 140 118-260 4-144 (293)
57 PRK15051 4-amino-4-deoxy-L-ara 98.6 3.6E-07 7.9E-12 68.9 9.3 68 192-259 41-108 (111)
58 PRK13499 rhamnose-proton sympo 98.6 1.9E-05 4.2E-10 70.9 21.6 241 10-261 68-342 (345)
59 PRK15051 4-amino-4-deoxy-L-ara 98.5 7.9E-07 1.7E-11 67.1 8.0 66 21-92 42-108 (111)
60 COG0697 RhaT Permeases of the 98.4 1.2E-05 2.6E-10 70.6 14.1 142 119-264 5-147 (292)
61 TIGR00776 RhaT RhaT L-rhamnose 98.2 1.5E-05 3.2E-10 70.7 11.6 131 122-261 2-137 (290)
62 PRK10532 threonine and homoser 98.1 6.1E-05 1.3E-09 67.0 13.2 128 118-259 9-136 (293)
63 PRK10452 multidrug efflux syst 98.1 2.9E-05 6.3E-10 59.0 9.4 69 194-262 36-105 (120)
64 PF06027 DUF914: Eukaryotic pr 98.1 8E-05 1.7E-09 66.9 13.3 145 118-264 10-155 (334)
65 PF08449 UAA: UAA transporter 98.0 9.6E-05 2.1E-09 66.0 12.3 129 133-267 12-143 (303)
66 PRK02971 4-amino-4-deoxy-L-ara 97.9 4.7E-05 1E-09 58.9 7.2 69 18-92 50-121 (129)
67 PRK09541 emrE multidrug efflux 97.9 0.00018 3.9E-09 54.0 9.8 68 194-261 36-104 (110)
68 KOG4510 Permease of the drug/m 97.9 4.4E-06 9.6E-11 70.9 1.0 135 118-260 35-169 (346)
69 COG4975 GlcU Putative glucose 97.8 2.1E-06 4.5E-11 72.0 -2.1 229 7-259 51-284 (288)
70 PF05653 Mg_trans_NIPA: Magnes 97.8 8.6E-05 1.9E-09 66.0 7.9 119 117-260 3-122 (300)
71 PF04657 DUF606: Protein of un 97.7 0.00076 1.6E-08 52.9 10.6 131 123-257 3-138 (138)
72 PRK10650 multidrug efflux syst 97.6 0.00086 1.9E-08 50.1 9.8 64 195-258 42-106 (109)
73 PRK10452 multidrug efflux syst 97.6 0.00034 7.4E-09 53.2 7.6 68 19-92 34-102 (120)
74 COG2076 EmrE Membrane transpor 97.6 0.00025 5.4E-09 52.3 6.3 67 195-261 37-104 (106)
75 PRK10650 multidrug efflux syst 97.5 0.00035 7.6E-09 52.2 6.6 70 16-91 36-106 (109)
76 PRK11431 multidrug efflux syst 97.5 0.0011 2.3E-08 49.3 9.1 66 195-260 36-102 (105)
77 COG2076 EmrE Membrane transpor 97.5 0.00037 7.9E-09 51.4 5.9 67 19-91 34-101 (106)
78 PF04142 Nuc_sug_transp: Nucle 97.4 0.00042 9E-09 59.8 7.0 69 197-265 26-94 (244)
79 PRK11431 multidrug efflux syst 97.4 0.00058 1.3E-08 50.8 6.7 67 19-91 33-100 (105)
80 PRK09541 emrE multidrug efflux 97.4 0.00053 1.2E-08 51.4 6.5 64 23-92 38-102 (110)
81 PF06800 Sugar_transport: Suga 97.4 0.0026 5.7E-08 55.2 11.5 82 185-267 43-129 (269)
82 PF00893 Multi_Drug_Res: Small 97.4 0.0012 2.5E-08 48.1 7.8 57 195-251 36-93 (93)
83 PRK13499 rhamnose-proton sympo 97.3 0.0027 5.8E-08 57.3 11.1 141 118-263 4-156 (345)
84 COG3238 Uncharacterized protei 97.3 0.0035 7.6E-08 49.3 10.3 139 120-261 4-147 (150)
85 PF03151 TPT: Triose-phosphate 97.2 0.0011 2.4E-08 52.6 6.9 73 12-90 78-150 (153)
86 PF07857 DUF1632: CEO family ( 97.0 0.0038 8.2E-08 53.9 8.3 127 122-265 1-139 (254)
87 PF00893 Multi_Drug_Res: Small 96.8 0.0043 9.4E-08 45.1 6.0 54 24-83 38-92 (93)
88 KOG2234 Predicted UDP-galactos 96.8 0.078 1.7E-06 47.5 14.8 138 123-261 17-165 (345)
89 PF06379 RhaT: L-rhamnose-prot 96.6 0.21 4.7E-06 44.6 16.2 241 11-261 69-341 (344)
90 PF10639 UPF0546: Uncharacteri 96.4 0.012 2.5E-07 44.2 6.2 109 128-258 3-112 (113)
91 COG5006 rhtA Threonine/homoser 96.3 0.013 2.8E-07 49.9 6.6 75 11-91 205-280 (292)
92 COG4975 GlcU Putative glucose 96.3 0.0021 4.5E-08 54.3 1.6 132 122-263 3-139 (288)
93 KOG2922 Uncharacterized conser 95.8 0.0033 7.2E-08 55.2 0.7 124 114-261 14-137 (335)
94 PF10639 UPF0546: Uncharacteri 95.2 0.043 9.4E-07 41.2 4.8 64 22-91 47-112 (113)
95 KOG1441 Glucose-6-phosphate/ph 94.9 0.018 3.8E-07 51.4 2.4 118 135-255 31-150 (316)
96 KOG2765 Predicted membrane pro 94.4 0.024 5.3E-07 50.9 2.1 67 199-265 170-236 (416)
97 KOG1580 UDP-galactose transpor 94.3 0.053 1.1E-06 45.7 3.7 74 13-92 239-312 (337)
98 TIGR00803 nst UDP-galactose tr 94.1 0.047 1E-06 46.3 3.2 66 18-89 155-220 (222)
99 KOG1581 UDP-galactose transpor 92.7 0.19 4.1E-06 44.1 4.7 75 11-91 237-311 (327)
100 KOG1444 Nucleotide-sugar trans 92.2 2.4 5.2E-05 37.6 10.9 123 130-258 21-147 (314)
101 KOG4314 Predicted carbohydrate 92.1 0.064 1.4E-06 44.0 1.0 63 201-263 66-128 (290)
102 PF06379 RhaT: L-rhamnose-prot 91.6 1.7 3.7E-05 39.0 9.4 144 117-264 3-157 (344)
103 PRK02237 hypothetical protein; 90.8 0.91 2E-05 33.5 5.7 45 218-262 63-107 (109)
104 KOG3912 Predicted integral mem 89.2 0.37 8E-06 41.9 3.1 66 196-261 94-159 (372)
105 KOG1443 Predicted integral mem 88.9 3 6.5E-05 36.9 8.4 121 140-260 35-156 (349)
106 PF04657 DUF606: Protein of un 87.8 0.87 1.9E-05 35.6 4.2 70 15-90 64-138 (138)
107 PF02694 UPF0060: Uncharacteri 87.4 0.72 1.6E-05 33.9 3.2 43 220-262 63-105 (107)
108 PF05977 MFS_3: Transmembrane 87.4 6 0.00013 38.2 10.5 40 219-258 351-390 (524)
109 PF05297 Herpes_LMP1: Herpesvi 87.4 0.18 3.8E-06 43.7 0.0 45 40-90 48-94 (381)
110 PRK06638 NADH:ubiquinone oxido 85.8 19 0.00042 29.9 13.0 32 229-260 133-166 (198)
111 KOG4831 Unnamed protein [Funct 83.2 5.7 0.00012 29.2 6.1 59 201-259 65-124 (125)
112 PF07168 Ureide_permease: Urei 79.9 2 4.4E-05 37.9 3.4 130 127-259 2-145 (336)
113 TIGR02865 spore_II_E stage II 78.9 80 0.0017 32.2 16.2 45 41-91 10-54 (764)
114 KOG1583 UDP-N-acetylglucosamin 78.5 2.7 5.9E-05 36.6 3.7 136 122-268 7-145 (330)
115 KOG1442 GDP-fucose transporter 78.3 1.1 2.4E-05 38.9 1.3 111 148-260 59-174 (347)
116 PF04342 DUF486: Protein of un 77.9 2.1 4.6E-05 31.4 2.5 30 229-258 77-106 (108)
117 PF03547 Mem_trans: Membrane t 76.6 61 0.0013 29.6 13.8 19 187-205 62-80 (385)
118 COG1742 Uncharacterized conser 75.9 5.3 0.00012 29.3 4.0 44 218-261 62-105 (109)
119 PRK13108 prolipoprotein diacyl 74.0 20 0.00043 34.0 8.5 25 240-264 254-278 (460)
120 PF07857 DUF1632: CEO family ( 74.0 32 0.00069 29.9 9.1 126 17-143 57-205 (254)
121 COG3169 Uncharacterized protei 73.4 8.2 0.00018 28.0 4.4 32 229-260 84-115 (116)
122 PF08507 COPI_assoc: COPI asso 70.3 9.6 0.00021 29.6 4.7 17 243-259 88-104 (136)
123 PRK02237 hypothetical protein; 69.3 25 0.00054 26.1 6.3 48 39-92 56-104 (109)
124 PF02694 UPF0060: Uncharacteri 66.7 21 0.00045 26.4 5.4 52 35-92 50-102 (107)
125 COG5070 VRG4 Nucleotide-sugar 66.6 12 0.00025 31.8 4.6 79 9-93 218-296 (309)
126 KOG2766 Predicted membrane pro 65.4 0.49 1.1E-05 40.6 -3.7 139 116-262 13-152 (336)
127 PF01102 Glycophorin_A: Glycop 63.3 5.4 0.00012 30.4 2.0 7 282-288 108-114 (122)
128 PF10225 DUF2215: Uncharacteri 58.8 73 0.0016 27.5 8.4 28 116-144 35-62 (249)
129 KOG1582 UDP-galactose transpor 58.1 39 0.00085 29.6 6.4 75 12-92 257-331 (367)
130 PF15345 TMEM51: Transmembrane 57.6 11 0.00024 31.9 3.0 24 246-269 67-90 (233)
131 COG3238 Uncharacterized protei 56.4 23 0.0005 28.0 4.5 74 12-91 66-144 (150)
132 PF06946 Phage_holin_5: Phage 55.4 76 0.0017 22.9 6.7 74 190-265 8-85 (93)
133 KOG4831 Unnamed protein [Funct 54.2 23 0.0005 26.1 3.8 59 27-91 64-123 (125)
134 PF06570 DUF1129: Protein of u 52.7 1.4E+02 0.0029 24.9 9.0 23 120-142 178-200 (206)
135 PF15048 OSTbeta: Organic solu 51.9 20 0.00044 27.2 3.3 28 233-260 25-56 (125)
136 COG3086 RseC Positive regulato 51.4 7.1 0.00015 30.5 0.8 25 211-235 71-95 (150)
137 PRK10666 ammonium transporter; 51.3 2.2E+02 0.0047 26.9 15.1 23 17-39 221-244 (428)
138 PRK10263 DNA translocase FtsK; 49.0 2.5E+02 0.0055 30.5 11.6 18 74-91 21-38 (1355)
139 COG1742 Uncharacterized conser 48.8 52 0.0011 24.2 4.9 38 50-93 67-104 (109)
140 KOG1623 Multitransmembrane pro 47.7 94 0.002 26.8 7.1 31 117-147 124-154 (243)
141 MTH00057 ND6 NADH dehydrogenas 47.5 1.6E+02 0.0034 24.2 10.9 32 229-260 132-165 (186)
142 PF04342 DUF486: Protein of un 45.8 25 0.00055 25.9 2.9 48 38-91 58-106 (108)
143 PRK13755 putative mercury tran 45.1 1.4E+02 0.003 22.8 6.7 77 15-91 17-95 (139)
144 PF15102 TMEM154: TMEM154 prot 45.0 23 0.00049 27.8 2.7 22 247-268 68-89 (146)
145 PF04277 OAD_gamma: Oxaloaceta 44.5 34 0.00073 23.5 3.4 12 245-256 9-20 (79)
146 TIGR03644 marine_trans_1 proba 42.3 2.9E+02 0.0064 25.8 14.6 21 17-37 206-227 (404)
147 PF15471 TMEM171: Transmembran 42.2 31 0.00067 29.9 3.4 23 242-264 161-183 (319)
148 PF06609 TRI12: Fungal trichot 41.4 3.7E+02 0.0079 26.7 12.7 174 63-257 232-419 (599)
149 PRK09412 anaerobic C4-dicarbox 40.8 2.3E+02 0.0049 26.7 9.3 32 54-93 6-37 (433)
150 PRK11010 ampG muropeptide tran 40.8 3.3E+02 0.0071 25.9 13.7 19 243-261 384-402 (491)
151 PF11044 TMEMspv1-c74-12: Plec 40.6 18 0.00038 22.0 1.2 17 240-256 2-18 (49)
152 PF09656 PGPGW: Putative trans 39.8 86 0.0019 20.1 4.3 47 76-147 4-50 (53)
153 COG3169 Uncharacterized protei 39.5 33 0.00071 25.0 2.6 32 54-91 82-113 (116)
154 PF06123 CreD: Inner membrane 39.3 3.4E+02 0.0073 25.7 13.8 81 42-148 298-378 (430)
155 PF13038 DUF3899: Domain of un 39.0 14 0.0003 26.4 0.8 19 241-259 3-21 (92)
156 TIGR02840 spore_YtaF putative 38.9 29 0.00064 29.0 2.8 45 215-259 34-80 (206)
157 PRK11469 hypothetical protein; 38.6 20 0.00044 29.5 1.7 42 218-259 44-86 (188)
158 PF07444 Ycf66_N: Ycf66 protei 38.5 29 0.00063 24.6 2.2 29 238-266 3-31 (84)
159 PF12606 RELT: Tumour necrosis 37.4 51 0.0011 20.8 3.0 13 251-263 14-26 (50)
160 COG1971 Predicted membrane pro 37.4 34 0.00075 28.2 2.8 42 219-260 45-87 (190)
161 PHA03049 IMV membrane protein; 35.7 50 0.0011 22.1 2.8 19 245-263 7-25 (68)
162 PRK05771 V-type ATP synthase s 35.4 4.6E+02 0.01 26.1 11.1 27 237-263 502-528 (646)
163 PF00909 Ammonium_transp: Ammo 35.2 3.7E+02 0.008 24.9 16.3 25 14-38 188-213 (399)
164 TIGR00836 amt ammonium transpo 34.6 3.9E+02 0.0084 25.0 14.8 23 16-38 196-219 (403)
165 COG4657 RnfA Predicted NADH:ub 33.7 2.5E+02 0.0055 22.6 10.4 69 52-146 82-157 (193)
166 PF15099 PIRT: Phosphoinositid 33.1 18 0.00039 27.5 0.5 21 237-257 74-94 (129)
167 COG3086 RseC Positive regulato 32.3 95 0.0021 24.4 4.3 35 35-70 68-102 (150)
168 PF08693 SKG6: Transmembrane a 32.1 33 0.00072 20.5 1.4 17 247-263 22-38 (40)
169 PF15108 TMEM37: Voltage-depen 31.4 1.6E+02 0.0035 23.5 5.5 75 77-164 91-167 (184)
170 PLN00028 nitrate transmembrane 31.4 4.5E+02 0.0097 24.7 10.8 12 246-257 418-429 (476)
171 PRK10489 enterobactin exporter 31.2 4.1E+02 0.0088 24.2 13.3 19 244-262 382-400 (417)
172 PRK11902 ampG muropeptide tran 30.6 4.1E+02 0.0089 24.1 14.7 18 241-258 369-386 (402)
173 PF10754 DUF2569: Protein of u 30.3 2.6E+02 0.0057 21.8 6.8 30 117-146 117-146 (149)
174 PRK09776 putative diguanylate 30.3 6.7E+02 0.015 26.4 16.2 13 51-63 28-40 (1092)
175 PRK12437 prolipoprotein diacyl 30.0 1.9E+02 0.0042 25.2 6.6 45 218-262 208-257 (269)
176 PF05961 Chordopox_A13L: Chord 29.8 75 0.0016 21.3 3.0 18 245-262 7-24 (68)
177 PF04971 Lysis_S: Lysis protei 29.6 75 0.0016 21.4 2.9 17 254-270 48-64 (68)
178 PRK15419 proline:sodium sympor 29.5 5.1E+02 0.011 24.8 11.3 14 133-146 347-360 (502)
179 PF04246 RseC_MucC: Positive r 28.4 24 0.00051 27.2 0.5 19 217-235 70-88 (135)
180 PRK14789 lipoprotein signal pe 27.8 3.1E+02 0.0067 22.7 7.0 13 230-242 107-119 (191)
181 PF15330 SIT: SHP2-interacting 27.7 1.3E+02 0.0028 22.4 4.3 21 244-264 5-26 (107)
182 PF05337 CSF-1: Macrophage col 27.1 21 0.00045 31.1 0.0 19 244-262 234-252 (285)
183 KOG1479 Nucleoside transporter 26.5 5.4E+02 0.012 24.1 11.8 15 77-91 17-31 (406)
184 COG5336 Uncharacterized protei 26.4 2E+02 0.0044 21.4 5.0 36 225-260 56-92 (116)
185 TIGR01998 PTS-II-BC-nag PTS sy 25.8 4.9E+02 0.011 24.9 9.0 30 185-214 348-377 (476)
186 PRK12405 electron transport co 25.5 4.3E+02 0.0093 22.6 12.5 23 148-170 64-86 (231)
187 KOG1619 Cytochrome b [Energy p 25.5 4.4E+02 0.0095 22.7 10.3 17 181-197 122-138 (245)
188 TIGR02005 PTS-IIBC-alpha PTS s 25.3 5.4E+02 0.012 25.0 9.1 28 188-215 385-412 (524)
189 PRK10110 bifunctional PTS syst 24.9 3.2E+02 0.007 26.6 7.6 32 185-216 395-426 (530)
190 PRK10921 twin-arginine protein 24.9 4.6E+02 0.01 22.8 13.5 35 202-236 171-208 (258)
191 TIGR00544 lgt prolipoprotein d 24.7 2.5E+02 0.0054 24.7 6.3 24 240-263 246-269 (278)
192 KOG2533 Permease of the major 24.3 6.5E+02 0.014 24.2 10.3 21 217-237 406-426 (495)
193 TIGR01167 LPXTG_anchor LPXTG-m 24.2 1E+02 0.0022 17.1 2.6 13 241-253 11-23 (34)
194 PRK15049 L-asparagine permease 24.1 6.4E+02 0.014 24.1 15.6 7 223-229 424-430 (499)
195 PF13994 PgaD: PgaD-like prote 24.1 1.7E+02 0.0036 22.7 4.6 18 245-262 66-83 (138)
196 PRK10862 SoxR reducing system 24.0 1.3E+02 0.0028 23.9 4.0 28 36-63 69-96 (154)
197 PRK10862 SoxR reducing system 23.8 37 0.0008 27.0 0.8 16 219-234 79-94 (154)
198 PRK11715 inner membrane protei 23.6 6.4E+02 0.014 23.9 13.5 80 43-148 305-384 (436)
199 cd08764 Cyt_b561_CG1275_like N 23.3 4.6E+02 0.0099 22.1 12.8 20 244-263 177-196 (214)
200 PF11295 DUF3096: Protein of u 23.1 69 0.0015 19.0 1.7 33 225-257 1-33 (39)
201 COG0004 AmtB Ammonia permease 22.7 6.4E+02 0.014 23.6 13.3 32 8-40 190-222 (409)
202 PF05393 Hum_adeno_E3A: Human 22.7 1.3E+02 0.0029 21.3 3.3 30 240-269 35-64 (94)
203 PF10753 DUF2566: Protein of u 22.7 1.1E+02 0.0024 19.7 2.7 24 47-70 8-31 (55)
204 CHL00196 psbY photosystem II p 22.6 1.6E+02 0.0034 17.2 3.0 19 121-139 6-24 (36)
205 PF08370 PDR_assoc: Plant PDR 22.0 31 0.00068 23.1 0.1 30 12-41 25-56 (65)
206 PF03547 Mem_trans: Membrane t 21.6 5.6E+02 0.012 23.2 8.4 13 47-59 3-15 (385)
207 KOG1623 Multitransmembrane pro 21.4 5.4E+02 0.012 22.2 9.4 46 213-258 154-204 (243)
208 PRK00052 prolipoprotein diacyl 21.1 79 0.0017 27.6 2.5 44 218-261 210-258 (269)
209 KOG0569 Permease of the major 20.8 6.2E+02 0.013 24.4 8.5 77 192-268 377-459 (485)
210 TIGR03810 arg_ornith_anti argi 20.7 7.1E+02 0.015 23.4 16.7 32 231-263 401-432 (468)
211 PF03616 Glt_symporter: Sodium 20.7 87 0.0019 28.8 2.7 24 54-77 13-36 (368)
212 COG4854 Predicted membrane pro 20.6 2.1E+02 0.0045 21.4 4.1 52 75-146 72-123 (126)
213 TIGR00893 2A0114 d-galactonate 20.5 5.8E+02 0.012 22.3 13.1 7 141-147 50-56 (399)
214 PF02404 SCF: Stem cell factor 20.1 34 0.00075 29.5 0.0 17 278-294 254-270 (273)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=7.4e-33 Score=250.34 Aligned_cols=254 Identities=40% Similarity=0.729 Sum_probs=198.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHH------hhhccccccccccchhhhh
Q 022220 8 PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIF------RMEKLKWRSKSSQAKSLGT 81 (300)
Q Consensus 8 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~------~~e~~~~~~~~~~~~~~~~ 81 (300)
++.+++++..+.+.|++++.++.+++.|++|+++++++++.++.|+++.++++++ +|||++++ +++|+
T Consensus 71 ~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~ 144 (358)
T PLN00411 71 PPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGT 144 (358)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHH
Confidence 4445778889999999997777899999999999999999999999999999999 58999888 99999
Q ss_pred HhhhhhhhhhhhccCCCccCC---CCCcc-ccc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHH
Q 022220 82 IVSIAGAFVVTFYKGPPIVRP---RLDIA-SLD-QIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCY 156 (300)
Q Consensus 82 ~l~~~Gv~ll~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~ 156 (300)
+++++|+.++...+++..... +..+. ... .......++..|+++++.++++|++|.+++|+..+++++....+++
T Consensus 145 ~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~ 224 (358)
T PLN00411 145 ILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFL 224 (358)
T ss_pred HHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHH
Confidence 999999998854443221100 00000 000 0011223457799999999999999999999999998756677777
Q ss_pred HHHHHHHHHHHHHHHhhc-ccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 022220 157 QYFFSTILAAMFSLTVVT-ELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII 235 (300)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~ 235 (300)
+..++.+...+.....+. +...|........+.++|.+++ +.++|.+|++++++.+|+++++..+++|++++++++++
T Consensus 225 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~ 303 (358)
T PLN00411 225 YTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIF 303 (358)
T ss_pred HHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHH
Confidence 777777766666655443 2333432233345668888875 56899999999999999999999999999999999999
Q ss_pred hcCCcchhhhhhhHHHHHHHHHHhhcccccccc
Q 022220 236 FGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT 268 (300)
Q Consensus 236 ~ge~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 268 (300)
+||++++.+++|+++|+.|+++..+.++++.|+
T Consensus 304 LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~ 336 (358)
T PLN00411 304 LNDSLYLGCLIGGILITLGFYAVMWGKANEEKD 336 (358)
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 999999999999999999999998866555433
No 2
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.96 E-value=5e-28 Score=215.91 Aligned_cols=232 Identities=13% Similarity=0.137 Sum_probs=187.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhh
Q 022220 6 IFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSI 85 (300)
Q Consensus 6 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~ 85 (300)
++++.++++++.++..|++++.+..+.+.|++|++++.++++.++.|+++++++++++|||++++ +++++++++
T Consensus 56 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~ 129 (302)
T TIGR00817 56 KRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIV 129 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh--hcChhHHHHHHHHHHHHH
Q 022220 86 AGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK--EFPALIVMLCYQYFFSTI 163 (300)
Q Consensus 86 ~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~ 163 (300)
+|+.+.. .+ +.+....|++++++++++|++|.+..|+..+ +. |+...+.+++..+.+
T Consensus 130 ~Gv~l~~--~~------------------~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~ 188 (302)
T TIGR00817 130 GGVALAS--DT------------------ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLF 188 (302)
T ss_pred HHHhhhc--CC------------------cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHH
Confidence 9997652 11 1123356999999999999999999999888 55 488999999999999
Q ss_pred HHHHHHHHhhcccc---ccee-----cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 022220 164 LAAMFSLTVVTELS---AWKL-----RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII 235 (300)
Q Consensus 164 ~~~~~~~~~~~~~~---~~~~-----~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~ 235 (300)
.+.|.....++... .+.. .....+...++.++.+....+.+++.++++.+|++.++...++|++++++++++
T Consensus 189 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~ 268 (302)
T TIGR00817 189 LLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILF 268 (302)
T ss_pred HHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhh
Confidence 99988775543211 0100 000111112233332333333456689999999999999999999999999999
Q ss_pred hcCCcchhhhhhhHHHHHHHHHHhhcccc
Q 022220 236 FGDGLFLGSLVGAVIIVIGFYVVMWGKAK 264 (300)
Q Consensus 236 ~ge~~~~~~~~G~~li~~g~~l~~~~~~~ 264 (300)
+||++++.+++|.++++.|++++.+.|++
T Consensus 269 lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 269 FGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999875543
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=4.3e-27 Score=209.50 Aligned_cols=224 Identities=16% Similarity=0.153 Sum_probs=177.2
Q ss_pred HHHHHHHHH-HHHHHHHHHhccc-cchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhc
Q 022220 17 KIFLLSLIS-CSSDFSSYIGLQY-SSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFY 94 (300)
Q Consensus 17 ~~~~~g~~~-~~~~~~~~~al~~-~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~ 94 (300)
.+...|++. .....+++.++++ .+++.++++.++.|+++.+++++++|||++++ ++++++++++|+.++..
T Consensus 60 ~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~- 132 (299)
T PRK11453 60 LLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE- 132 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-
Confidence 345556655 5666688889988 58899999999999999999999999999999 99999999999988831
Q ss_pred cCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC--hhHHHHHHHHHHHHHHHHHHHHHh
Q 022220 95 KGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP--ALIVMLCYQYFFSTILAAMFSLTV 172 (300)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 172 (300)
.+ .. ..+....|+.+++.++++|+.|.+..|+..++.+ +......+....+.+.........
T Consensus 133 ~~-~~---------------~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (299)
T PRK11453 133 DS-LN---------------GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL 196 (299)
T ss_pred cc-CC---------------CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 11 00 1122346999999999999999999999876653 233444555555544333333333
Q ss_pred hccc---ccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhH
Q 022220 173 VTEL---SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAV 249 (300)
Q Consensus 173 ~~~~---~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~ 249 (300)
+++. ..+...+...+..++|++++++.++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~ 276 (299)
T PRK11453 197 DGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAV 276 (299)
T ss_pred cCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 3221 1122235568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccc
Q 022220 250 IIVIGFYVVMWGKA 263 (300)
Q Consensus 250 li~~g~~l~~~~~~ 263 (300)
++++|+++..+.++
T Consensus 277 lI~~gv~l~~~~~~ 290 (299)
T PRK11453 277 LIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHhcchh
Confidence 99999998877554
No 4
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.95 E-value=9.9e-27 Score=206.55 Aligned_cols=236 Identities=20% Similarity=0.293 Sum_probs=196.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220 11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV 90 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l 90 (300)
.+++|++.++.|++.+.++++.+.|++|++.+.++++.++..+++++++++++|+|+++. +++|++++++|+.+
T Consensus 75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~l 148 (334)
T PF06027_consen 75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVL 148 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhh
Confidence 346788899999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 022220 91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSL 170 (300)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (300)
+...+....+ .+...++...|+++++.++++||+++++.++..++.+ .....++..+++.++..+...
T Consensus 149 v~~sD~~~~~-----------~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ 216 (334)
T PF06027_consen 149 VVVSDVLSGS-----------DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLA 216 (334)
T ss_pred eeeecccccc-----------cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 8543322111 0123567899999999999999999999999999986 888899999999999888877
Q ss_pred Hhhcc-cccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhH
Q 022220 171 TVVTE-LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAV 249 (300)
Q Consensus 171 ~~~~~-~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~ 249 (300)
+.+.. ....+ +.......+....++...-|.+....++..+|+..++-..+..+++++++++++|+++++..++|.+
T Consensus 217 ile~~~i~~~~--w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~ 294 (334)
T PF06027_consen 217 ILERSGIESIH--WTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFA 294 (334)
T ss_pred heehhhhhccC--CChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHH
Confidence 66543 21111 1222333333344567788888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccc
Q 022220 250 IIVIGFYVVMWGKAKEE 266 (300)
Q Consensus 250 li~~g~~l~~~~~~~~~ 266 (300)
+|++|+.++...+++++
T Consensus 295 lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 295 LIIIGFVVYNLAESPEE 311 (334)
T ss_pred HHHHHhheEEccCCccc
Confidence 99999999887655443
No 5
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.95 E-value=1.3e-26 Score=205.81 Aligned_cols=224 Identities=15% Similarity=0.166 Sum_probs=186.4
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHhc-cccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhh
Q 022220 10 VTTSVLWKIFLLSLIS-CSSDFSSYIGL-QYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAG 87 (300)
Q Consensus 10 ~~~~~~~~~~~~g~~~-~~~~~~~~~al-~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~G 87 (300)
.+++++......|.++ +.++.+++.+. ++++++.++++.++.|+++.+++++ +|||++++ +++|++++++|
T Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~G 135 (292)
T PRK11272 63 PTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAG 135 (292)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHh
Confidence 3566788888888887 78888999999 9999999999999999999999985 69999999 99999999999
Q ss_pred hhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHH
Q 022220 88 AFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAM 167 (300)
Q Consensus 88 v~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (300)
+.++.. ++ . .+....|++++++++++||.|.+..|+..++. +...+.++..++.+...+
T Consensus 136 v~ll~~-~~-~-----------------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 194 (292)
T PRK11272 136 IVLLNS-GG-N-----------------LSGNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLI 194 (292)
T ss_pred HHHHhc-Cc-c-----------------cccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHH
Confidence 988732 11 0 11234699999999999999999988875432 455667777888777777
Q ss_pred HHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhh
Q 022220 168 FSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVG 247 (300)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G 247 (300)
.....+.... ...+...|..+++++++++.+++.+|++++++.++++++.+.+++|+++++++++++||++++.+++|
T Consensus 195 ~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG 272 (292)
T PRK11272 195 ASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLA 272 (292)
T ss_pred HHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 6654332211 11244678899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccc
Q 022220 248 AVIIVIGFYVVMWGKA 263 (300)
Q Consensus 248 ~~li~~g~~l~~~~~~ 263 (300)
+++++.|+++..+.++
T Consensus 273 ~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 273 LGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876433
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=1.3e-26 Score=202.22 Aligned_cols=216 Identities=19% Similarity=0.222 Sum_probs=186.0
Q ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220 11 TTSVLWKIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF 89 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ 89 (300)
+++++.+....|.++ ++++.+++.|++++++++++++.++.|+++.+++++++|||++++ ++.|+.++++|+.
T Consensus 42 ~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~ 115 (260)
T TIGR00950 42 PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAV 115 (260)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHH
Confidence 455777788888887 999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHH
Q 022220 90 VVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMF 168 (300)
Q Consensus 90 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (300)
++. ..+ . .+....|+++++.++++|+.+.+..|+..++.+ ++.....+.+.++.++..+.
T Consensus 116 li~-~~~---~---------------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 176 (260)
T TIGR00950 116 LLL-SDG---N---------------LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPF 176 (260)
T ss_pred hhc-cCC---c---------------ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 883 211 0 123467999999999999999999999987764 34455557788888888877
Q ss_pred HHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhh
Q 022220 169 SLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGA 248 (300)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~ 248 (300)
....+++. .+ +...+..+++.+++++.++|.+|++++++.++.+++.+.+++|+++++++++++||++++.+++|+
T Consensus 177 ~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~ 252 (260)
T TIGR00950 177 AWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGG 252 (260)
T ss_pred HHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 76543221 11 455777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 022220 249 VIIVIGF 255 (300)
Q Consensus 249 ~li~~g~ 255 (300)
++++.|+
T Consensus 253 ~li~~g~ 259 (260)
T TIGR00950 253 ALIIAAV 259 (260)
T ss_pred HHHHHhc
Confidence 9999986
No 7
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.95 E-value=2.2e-26 Score=204.55 Aligned_cols=223 Identities=11% Similarity=0.099 Sum_probs=167.5
Q ss_pred HHHHHHHH-HHHHHHHHHhccc----cchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220 18 IFLLSLIS-CSSDFSSYIGLQY----SSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT 92 (300)
Q Consensus 18 ~~~~g~~~-~~~~~~~~~al~~----~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~ 92 (300)
..+.+.++ +.+..+++.++++ +++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++.
T Consensus 63 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 63 YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVL 136 (295)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhhee
Confidence 33444445 7888888888754 57888899999999999999999999999999 9999999999999884
Q ss_pred hccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHh
Q 022220 93 FYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV 172 (300)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (300)
. .+...+ . .+...+......|++++++++++||.|.+..|+..++.+ +..... ..+.+...+.....
T Consensus 137 ~-~~~~~~-~-------~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~~---~~~~~~l~~~~~~~ 203 (295)
T PRK11689 137 G-GDNGLS-L-------AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLFF---ILTALALWIKYFLS 203 (295)
T ss_pred c-CCccch-h-------hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHHH---HHHHHHHHHHHHHh
Confidence 2 211000 0 000001112346999999999999999999999877664 554322 22333333322322
Q ss_pred hcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHH
Q 022220 173 VTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIV 252 (300)
Q Consensus 173 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~ 252 (300)
+... . ..+...+..+++.++ +++++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+
T Consensus 204 ~~~~--~-~~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~ 279 (295)
T PRK11689 204 PQPA--M-VFSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVT 279 (295)
T ss_pred cCcc--c-cCCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 2111 1 123456777888884 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 022220 253 IGFYVVMWGKA 263 (300)
Q Consensus 253 ~g~~l~~~~~~ 263 (300)
.|+.+..+.++
T Consensus 280 ~gv~~~~~~~~ 290 (295)
T PRK11689 280 AGSLLCWLATR 290 (295)
T ss_pred HhHHHHhhhHh
Confidence 99988866443
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.95 E-value=1.1e-25 Score=199.92 Aligned_cols=221 Identities=10% Similarity=0.063 Sum_probs=175.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhh
Q 022220 9 TVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGA 88 (300)
Q Consensus 9 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv 88 (300)
+.++++++..+..|++....+.+++.+++++|++.++++..+.|+++.+++ +|++++ ..++.++++|+
T Consensus 65 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--------~~~~~i~~~Gv 132 (293)
T PRK10532 65 RFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--------FVWVVLAVLGL 132 (293)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--------HHHHHHHHHHH
Confidence 456778888889999888888999999999999999999999999999886 355433 44567788999
Q ss_pred hhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHH
Q 022220 89 FVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMF 168 (300)
Q Consensus 89 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (300)
.++. ..+... ......|++++++++++|+.|.+..|+..++.+ +... .+...+++++..++
T Consensus 133 ~li~-~~~~~~----------------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~ 193 (293)
T PRK10532 133 WFLL-PLGQDV----------------SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPI 193 (293)
T ss_pred heee-ecCCCc----------------ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHH
Confidence 8873 111111 122357999999999999999999999987765 5554 45556666666666
Q ss_pred HHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhh
Q 022220 169 SLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGA 248 (300)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~ 248 (300)
....+. ...+ +...+..++++|++++.++|.+|++++++.++++++++.+++|+++.+++++++||++++.+++|+
T Consensus 194 ~~~~~~-~~~~---~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~ 269 (293)
T PRK10532 194 GALQAG-EALW---HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLAL 269 (293)
T ss_pred HHHccC-cccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 554322 1111 334566678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccc
Q 022220 249 VIIVIGFYVVMWGKAK 264 (300)
Q Consensus 249 ~li~~g~~l~~~~~~~ 264 (300)
++|+.|.....+..++
T Consensus 270 ~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 270 GAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999988765444
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.94 E-value=8.2e-25 Score=193.20 Aligned_cols=223 Identities=15% Similarity=0.159 Sum_probs=167.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhh
Q 022220 7 FPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIA 86 (300)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~ 86 (300)
+++.+++.+..++..++.+..++.+++.|+++.+++.++++.++.|+++.+++++++|||++++ +++|+.+++.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~ 128 (281)
T TIGR03340 55 WSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITL 128 (281)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHH
Confidence 3444444444555555555999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhH---HHHHHHHHHHHH
Q 022220 87 GAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALI---VMLCYQYFFSTI 163 (300)
Q Consensus 87 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~ 163 (300)
|+.++.. .+ .. .....|+.++++++++|+.|.+..|+..++.++.. ....+......+
T Consensus 129 Gv~ll~~-~~--~~----------------~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (281)
T TIGR03340 129 GLLVLGL-SR--FA----------------QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGW 189 (281)
T ss_pred HHHHHhc-cc--cc----------------ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHH
Confidence 9998832 11 10 11235788899999999999998777654433111 122222222211
Q ss_pred HHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchh
Q 022220 164 LAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLG 243 (300)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~ 243 (300)
...+.....+. ..+. .....++.+++.+.+++.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.
T Consensus 190 ~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~ 266 (281)
T TIGR03340 190 PFLLLYLKRHG--RSMF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT 266 (281)
T ss_pred HHHHHHHHHhc--cchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH
Confidence 11111111111 1111 12335567788888899999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHH
Q 022220 244 SLVGAVIIVIGFYV 257 (300)
Q Consensus 244 ~~~G~~li~~g~~l 257 (300)
+++|+++++.|+.+
T Consensus 267 ~~iG~~lil~Gv~l 280 (281)
T TIGR03340 267 RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHhHHh
Confidence 99999999999875
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.93 E-value=5.3e-24 Score=189.32 Aligned_cols=216 Identities=10% Similarity=0.070 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
++++......++..+.++.+++.|++++|+++++++.++.|+++.+++++++|||++++ +++|++++++|+.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li 143 (296)
T PRK15430 70 PQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQ 143 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHH
Confidence 33333333334444899999999999999999999999999999999999999999999 999999999999988
Q ss_pred hhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHHH
Q 022220 92 TFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSL 170 (300)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (300)
.... ++. ..++++++++|+.|.+..|+..++.. +......+...++.....+.
T Consensus 144 ~~~~--------------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 197 (296)
T PRK15430 144 LWTF--------------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI-- 197 (296)
T ss_pred HHHc--------------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH--
Confidence 3110 001 14578889999999999887653321 22333344444443332211
Q ss_pred HhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHH
Q 022220 171 TVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI 250 (300)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~l 250 (300)
.......+...+...+..+++.|+ ++.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~l 275 (296)
T PRK15430 198 -ADSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAF 275 (296)
T ss_pred -ccCCcccccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 111111111111112333444454 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 022220 251 IVIGFYVVMWG 261 (300)
Q Consensus 251 i~~g~~l~~~~ 261 (300)
|+.|+.+....
T Consensus 276 I~~~~~v~~~~ 286 (296)
T PRK15430 276 IWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHH
Confidence 99988776654
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.93 E-value=3.4e-24 Score=194.45 Aligned_cols=223 Identities=15% Similarity=0.149 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
+++++.++..|+++...+...+.|+++++++.++++..+.|+++++++++++|||++++ ++++++++++|+.+.
T Consensus 111 ~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~ 184 (350)
T PTZ00343 111 KLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALA 184 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHhe
Confidence 45788999999999666777889999999999999999999999999999999999999 999999999999988
Q ss_pred hhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC------hhHHHHHHHHHHHHHHH
Q 022220 92 TFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP------ALIVMLCYQYFFSTILA 165 (300)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 165 (300)
.. + +.+....|++++++++++|+.+.+..|+..++.+ ++.....+...++.++.
T Consensus 185 ~~--~------------------~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (350)
T PTZ00343 185 SV--K------------------ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLIS 244 (350)
T ss_pred ec--c------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHH
Confidence 42 1 1123467999999999999999999999987642 25556666688899888
Q ss_pred HHHHHHhhcc--cccce----ecchhhHHHHHHHHHHHHHHHHHHHHH----HHhccCceeeecchhhHHHHHHHHHHHH
Q 022220 166 AMFSLTVVTE--LSAWK----LRLDVGLFAIAYSAVIGAAFLTTLLLW----CLMRAGPLYVSMFKPLAILFSTVMGVII 235 (300)
Q Consensus 166 ~~~~~~~~~~--~~~~~----~~~~~~~~~ll~~g~~~~~~~~~~~~~----al~~~~a~~~s~~~~~~pv~a~~l~~~~ 235 (300)
+|+....+.. ...+. ......+..+++. ++.+++.+.+|+. ++++++|.+.++...++|++++++++++
T Consensus 245 lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~ 323 (350)
T PTZ00343 245 LPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIII 323 (350)
T ss_pred HHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHH
Confidence 8887755432 11110 0011122334453 5567889999985 9999999999999999999999999999
Q ss_pred hcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220 236 FGDGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 236 ~ge~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
+||++++.+++|.++++.|++++...
T Consensus 324 ~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 324 FQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred hCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998764
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.88 E-value=8.1e-21 Score=167.68 Aligned_cols=216 Identities=22% Similarity=0.364 Sum_probs=171.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHH-HHhhhccccccccccchhhhhHhhhhhhhhhhh
Q 022220 16 WKIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAI-IFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTF 93 (300)
Q Consensus 16 ~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~-~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~ 93 (300)
+...+.+.++ ..++.+++.++++++++.++++.++.|+++.++++ +++|||++++ +++++.+++.|+.++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~ 143 (292)
T COG0697 70 LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILL 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheec
Confidence 4455555555 99999999999999999999999999999999997 7779999999 99999999999999942
Q ss_pred ccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHH-HHHHHHHHHHHHHHHHh
Q 022220 94 YKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLC-YQYFFSTILAAMFSLTV 172 (300)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 172 (300)
... ... .. ...|+.+++.++++|+.+.+..|+.. +.+ +..... +..........+...
T Consensus 144 ~~~-~~~---------------~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~-- 202 (292)
T COG0697 144 GGG-GGG---------------IL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLLLALLLLLLFFL-- 202 (292)
T ss_pred CCC-cch---------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHh--
Confidence 111 110 01 57899999999999999999999887 443 444444 333311111111111
Q ss_pred hcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHH
Q 022220 173 VTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIV 252 (300)
Q Consensus 173 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~ 252 (300)
.... .......+..+.+.|++++++++.++++++++.++...+.+.+++|+++.++++++++|+++..+++|+.+++
T Consensus 203 ~~~~---~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~ 279 (292)
T COG0697 203 SGFG---APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVV 279 (292)
T ss_pred cccc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 1111 1224557888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 022220 253 IGFYVVMWG 261 (300)
Q Consensus 253 ~g~~l~~~~ 261 (300)
.|+.+...+
T Consensus 280 ~g~~l~~~~ 288 (292)
T COG0697 280 LGVLLASLR 288 (292)
T ss_pred HHHHHHhcc
Confidence 999988765
No 13
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.86 E-value=2.2e-20 Score=154.88 Aligned_cols=224 Identities=11% Similarity=0.047 Sum_probs=184.6
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhH
Q 022220 3 GRLIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTI 82 (300)
Q Consensus 3 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~ 82 (300)
.|.-++++++++|..++.+|.+....|.+||.+++..|.+.+..+.++-|+.+++++. |. .+ +...+.
T Consensus 59 ~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s---Rr---~~------d~vwva 126 (292)
T COG5006 59 FRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS---RR---LR------DFVWVA 126 (292)
T ss_pred hhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc---cc---hh------hHHHHH
Confidence 3444577888999999999999999999999999999999999999999999988862 22 22 666677
Q ss_pred hhhhhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHH
Q 022220 83 VSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFST 162 (300)
Q Consensus 83 l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (300)
+++.|+.++ ...++.. .+....|..+++.++.||+.|.+..+|..+..+ .-.-...-+.+++
T Consensus 127 LAvlGi~lL-~p~~~~~----------------~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAa 188 (292)
T COG5006 127 LAVLGIWLL-LPLGQSV----------------WSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAA 188 (292)
T ss_pred HHHHHHHhh-eeccCCc----------------CcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHH
Confidence 888999888 3233222 345568999999999999999999888876544 6677778888999
Q ss_pred HHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcch
Q 022220 163 ILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 242 (300)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~ 242 (300)
++.+|+.....++ . ..++.-...-+..+++++.+.|.+-..++++.++...+.++.+||.++.+.|++++||.+|+
T Consensus 189 viv~Pig~~~ag~-~---l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~ 264 (292)
T COG5006 189 LIVLPIGAAQAGP-A---LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTL 264 (292)
T ss_pred HHHhhhhhhhcch-h---hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCH
Confidence 9999998854332 1 11334555667889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhh
Q 022220 243 GSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 243 ~~~~G~~li~~g~~l~~~ 260 (300)
.||.|.++|+.+..-..+
T Consensus 265 ~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 265 IQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999998765544
No 14
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.85 E-value=8.3e-23 Score=170.32 Aligned_cols=232 Identities=19% Similarity=0.195 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220 13 SVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT 92 (300)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~ 92 (300)
...+++.++|+.|..+....|+|++|++.+++++|.++.|++|.+++|+++|||.++. ..++..+.+.|++++.
T Consensus 95 g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 95 GKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV 168 (346)
T ss_pred CcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe
Confidence 3446788999999999999999999999999999999999999999999999999999 9999999999999984
Q ss_pred hccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHh
Q 022220 93 FYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV 172 (300)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (300)
+.+.....++.+++. ++......|.+.++.++++-+-.+++.|+.-|+.+ ......+...++.+.........
T Consensus 169 --RPpFlFG~~t~g~~~----s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~i 241 (346)
T KOG4510|consen 169 --RPPFLFGDTTEGEDS----SQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASI 241 (346)
T ss_pred --cCCcccCCCcccccc----ccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhc
Confidence 222222122112222 22344455777888888888877788788877764 55555555666666655444322
Q ss_pred hcccccceec-chhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHH
Q 022220 173 VTELSAWKLR-LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII 251 (300)
Q Consensus 173 ~~~~~~~~~~-~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li 251 (300)
..|..+ ...+++.+..+|+++ .+++.+...++++..|.++++..+.+.+++.++++++|||.||++.|.|++++
T Consensus 242 ----g~~~lP~cgkdr~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~v 316 (346)
T KOG4510|consen 242 ----GAVQLPHCGKDRWLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMV 316 (346)
T ss_pred ----cceecCccccceEEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeee
Confidence 123322 356778888888854 68888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 022220 252 VIGFYVVMWGK 262 (300)
Q Consensus 252 ~~g~~l~~~~~ 262 (300)
+.+.......|
T Consensus 317 vsS~v~~a~~k 327 (346)
T KOG4510|consen 317 VSSTVWVALKK 327 (346)
T ss_pred ehhHHHHHHHH
Confidence 99776655433
No 15
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.85 E-value=2.9e-20 Score=162.20 Aligned_cols=221 Identities=20% Similarity=0.275 Sum_probs=189.2
Q ss_pred HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhccCCCccCCCCC
Q 022220 26 CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLD 105 (300)
Q Consensus 26 ~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~~ 105 (300)
.+++++++.|+.+++++..+++.+++.+||.+++.++..||++.. |++++.++++|+++++..+....+
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~~~----- 238 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQNS----- 238 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccccc-----
Confidence 999999999999999999999999999999999999999999999 999999999999999654332211
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC---hhHHHHHHHHHHHHHHHHHHHHHhhc-cccccee
Q 022220 106 IASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP---ALIVMLCYQYFFSTILAAMFSLTVVT-ELSAWKL 181 (300)
Q Consensus 106 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 181 (300)
.........|+++++++|+.||+|.++.|+...+.. |.-.+.++..++..++++|..++... ..+.+..
T Consensus 239 -------~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~l 311 (416)
T KOG2765|consen 239 -------DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFEL 311 (416)
T ss_pred -------cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccC
Confidence 023567789999999999999999999999988873 44556667777777777766655422 2344566
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220 182 RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 182 ~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
++..+...++..++++++++-.+|.+|.-..++..+++-+.+++..+++.++++-|..+++.+++|...|+.|.+.+...
T Consensus 312 P~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 312 PSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred CCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence 67777888889999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ccc
Q 022220 262 KAK 264 (300)
Q Consensus 262 ~~~ 264 (300)
.+.
T Consensus 392 ~~~ 394 (416)
T KOG2765|consen 392 SEN 394 (416)
T ss_pred ccc
Confidence 443
No 16
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.84 E-value=7.3e-19 Score=156.83 Aligned_cols=238 Identities=18% Similarity=0.204 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220 11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV 90 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l 90 (300)
++..++.++..+++..++..+.+.|++|.|.....++.++.|+++++++.+++|+|.+++ ++.++++..+|+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~ 133 (303)
T PF08449_consen 60 RKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAI 133 (303)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHhe
Confidence 344567788889999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHH
Q 022220 91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFS 169 (300)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 169 (300)
..+.+.......+ .....+..|+++++.+.++.+...+.+++..++++ ++...+++.+.++.+..++..
T Consensus 134 ~~~~~~~~~~~~~----------~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~ 203 (303)
T PF08449_consen 134 FTLSDSSSSSSSN----------SSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILL 203 (303)
T ss_pred eeecccccccccc----------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8653322221110 11223344999999999999999999999999875 688999999999999888777
Q ss_pred HH--hhcccccc--eecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhh
Q 022220 170 LT--VVTELSAW--KLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSL 245 (300)
Q Consensus 170 ~~--~~~~~~~~--~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~ 245 (300)
.. ..+....+ ....+..+..++...+ +..++....+...++.+|...+++..++-+++++++++++|+++++.+|
T Consensus 204 ~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~ 282 (303)
T PF08449_consen 204 FLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQW 282 (303)
T ss_pred HHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHH
Confidence 76 22211111 1112334444444444 5566666777889999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccccc
Q 022220 246 VGAVIIVIGFYVVMWGKAKE 265 (300)
Q Consensus 246 ~G~~li~~g~~l~~~~~~~~ 265 (300)
+|.++++.|..++.+.++|+
T Consensus 283 ~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 283 IGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHhHHHHHHHHHhhccC
Confidence 99999999999998876654
No 17
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.83 E-value=2.1e-19 Score=156.60 Aligned_cols=186 Identities=10% Similarity=0.022 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhc
Q 022220 15 LWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFY 94 (300)
Q Consensus 15 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~ 94 (300)
+..+...|++.++++.+++.|++++++++++++.++.|+++++++++++|||++++ ++++++++++|+.++...
T Consensus 70 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~ 143 (256)
T TIGR00688 70 ILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVL 143 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHH
Confidence 44567788888999999999999999999999999999999999999999999999 999999999999887421
Q ss_pred cCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 022220 95 KGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVT 174 (300)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (300)
+ .+.. .+++.++++|+.|.+..|+..++ + ........ ........+.... .+
T Consensus 144 ~--------------------~~~~----~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~-~~ 195 (256)
T TIGR00688 144 K--------------------GSLP----WEALVLAFSFTAYGLIRKALKNT-D-LAGFCLET-LSLMPVAIYYLLQ-TD 195 (256)
T ss_pred c--------------------CCch----HHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHHH-HHHHHHHHHHHHH-hc
Confidence 0 0011 35688999999999998876543 2 22221111 1111121111111 11
Q ss_pred ccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 022220 175 ELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII 235 (300)
Q Consensus 175 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~ 235 (300)
........+...|..+++.|++ +.++|.++++++++.+++++++..+++|+++.+++++.
T Consensus 196 ~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 196 FATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred cCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 1110111122367888888875 88999999999999999999999999999999999764
No 18
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.78 E-value=5.3e-17 Score=138.27 Aligned_cols=219 Identities=14% Similarity=0.105 Sum_probs=171.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220 11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV 90 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l 90 (300)
+++.+..+.+.++....++..|.+|.++-.+-++++=++..|++.++++++|+|||+++. |++++.++.+||..
T Consensus 68 ~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~ 141 (293)
T COG2962 68 QPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLI 141 (293)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHH
Confidence 345667777777777999999999999999999999999999999999999999999999 99999999999998
Q ss_pred hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 022220 91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSL 170 (300)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (300)
..+..| +... ..+.=+++|+.|... ||..+- ++.+-.......-....+.+.+
T Consensus 142 ~~~~~g--------------------~lpw----val~la~sf~~Ygl~-RK~~~v--~a~~g~~lE~l~l~p~al~yl~ 194 (293)
T COG2962 142 QTWLLG--------------------SLPW----VALALALSFGLYGLL-RKKLKV--DALTGLTLETLLLLPVALIYLL 194 (293)
T ss_pred HHHHcC--------------------CCcH----HHHHHHHHHHHHHHH-HHhcCC--chHHhHHHHHHHHhHHHHHHHH
Confidence 855322 1122 235557889999777 444443 3555555555555555554444
Q ss_pred HhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHH
Q 022220 171 TVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI 250 (300)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~l 250 (300)
..+...+.....+...++.+...|. .+.++..++..+-|+++-+..+.++|.+|..-.+++++++||+++..+++..++
T Consensus 195 ~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~ 273 (293)
T COG2962 195 FLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAF 273 (293)
T ss_pred HHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4433322011124445666677776 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccc
Q 022220 251 IVIGFYVVMWGKA 263 (300)
Q Consensus 251 i~~g~~l~~~~~~ 263 (300)
|-+|+.++.+..-
T Consensus 274 IW~aL~l~~~d~l 286 (293)
T COG2962 274 IWLALALFSIDGL 286 (293)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999886544
No 19
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.77 E-value=3e-17 Score=145.33 Aligned_cols=220 Identities=13% Similarity=0.141 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhh-hhHHHHHHHHHHHhhhccccccccccch----hhhhHhhhh
Q 022220 12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLN-LIPAFTFILAIIFRMEKLKWRSKSSQAK----SLGTIVSIA 86 (300)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~-~~pi~~~ila~~~~~e~~~~~~~~~~~~----~~~~~l~~~ 86 (300)
++.+..-.+.|+.-+.++.+++.+.++++.+.+..+.+ +.+++..+++.+++|||.+++ + ++|++++++
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~ 129 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIII 129 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHH
Confidence 33444445555555888899999999999999999988 889999999999999999999 8 999999999
Q ss_pred hhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHH---HHHHH
Q 022220 87 GAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQY---FFSTI 163 (300)
Q Consensus 87 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~ 163 (300)
|+.++...+++.. ++ .+..+...|+++++.++++|+.|.+..|.. ++ ++....+.+. ++++.
T Consensus 130 G~~l~~~~~~~~~----------~~--~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~ 194 (290)
T TIGR00776 130 GVYLTSRSKDKSA----------GI--KSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGI 194 (290)
T ss_pred hHheEEecccccc----------cc--ccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHH
Confidence 9988743211100 00 000233569999999999999999998865 34 3666633333 33333
Q ss_pred HHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHh-ccCceeeecchhhHHHHHHHHHHHHhcCCcch
Q 022220 164 LAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM-RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 242 (300)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~-~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~ 242 (300)
+..+... ....+ ..+..+..+..|++ ..+++.+|..+.+ +.+++..+.+...+|+.+.+++++++||+.++
T Consensus 195 ~~~~~~~----~~~~~---~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~ 266 (290)
T TIGR00776 195 IFNLGHI----LAKPL---KKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTK 266 (290)
T ss_pred HHHHHHh----cccch---HHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 2222110 11112 22233334448887 6999999999999 99999999999999999999999999999999
Q ss_pred hhh----hhhHHHHHHHHHHhh
Q 022220 243 GSL----VGAVIIVIGFYVVMW 260 (300)
Q Consensus 243 ~~~----~G~~li~~g~~l~~~ 260 (300)
.++ +|+++++.|+.+...
T Consensus 267 ~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 267 REMIAISVGIILIIIAANILGI 288 (290)
T ss_pred ceeehhHHHHHHHHHHHHHHhc
Confidence 999 999999999887643
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.72 E-value=2.7e-17 Score=144.71 Aligned_cols=227 Identities=19% Similarity=0.243 Sum_probs=190.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220 11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV 90 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l 90 (300)
++..+..++.+|++.+++..+.+.++.+.|++.++++..+.|++++++++++.+|+.+.. .+..++....|+.+
T Consensus 79 ~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~i 152 (316)
T KOG1441|consen 79 SKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAI 152 (316)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEE
Confidence 345788999999999999999999999999999999999999999999999999999999 89999999999988
Q ss_pred hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh--cC-hhHHHHHHHHHHHHHHHH-
Q 022220 91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKE--FP-ALIVMLCYQYFFSTILAA- 166 (300)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~- 166 (300)
-+. .+.+.+..|...++++.+..+..++..++..++ .+ |++....++.-++.+.++
T Consensus 153 as~--------------------~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~ 212 (316)
T KOG1441|consen 153 ASV--------------------TELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLI 212 (316)
T ss_pred eee--------------------ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhc
Confidence 753 123466789999999999999999999999953 32 799999999999999998
Q ss_pred HHHHHhhcccc------cceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCc
Q 022220 167 MFSLTVVTELS------AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGL 240 (300)
Q Consensus 167 ~~~~~~~~~~~------~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~ 240 (300)
|+....+++.. .|+. .....++..+ +........+..+.+++|.+.++.+.+.-++.++.++++|+++.
T Consensus 213 P~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sv-~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pv 287 (316)
T KOG1441|consen 213 PFLDYVEGNKFVGFLTAPWFV----TFLILLLNSV-LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPV 287 (316)
T ss_pred chHhhhcccceeeeeccccch----hhHHHHHHHH-HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCC
Confidence 88776555432 2322 2333333333 44444555568999999999999999999999999999999999
Q ss_pred chhhhhhhHHHHHHHHHHhhcccccccc
Q 022220 241 FLGSLVGAVIIVIGFYVVMWGKAKEENT 268 (300)
Q Consensus 241 ~~~~~~G~~li~~g~~l~~~~~~~~~~~ 268 (300)
|+.+..|.++.+.|+++|.+.|.++++.
T Consensus 288 t~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 288 TFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999887765543
No 21
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.71 E-value=3.7e-16 Score=128.51 Aligned_cols=226 Identities=16% Similarity=0.174 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhc
Q 022220 15 LWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFY 94 (300)
Q Consensus 15 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~ 94 (300)
-+....++..+.++...-+.|++|+|--...+-.++-|+-+++++..+.|++.+++ +..+++..++|+.+. ++
T Consensus 85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValF-mY 157 (337)
T KOG1580|consen 85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALF-MY 157 (337)
T ss_pred chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHh-hc
Confidence 36677888888889999999999999988888899999999999999999999999 999999999999988 55
Q ss_pred cCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHHHHhh
Q 022220 95 KGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVV 173 (300)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (300)
+.+... +..+.....|.++.+++-..-++....+.+..+.+. ....++++.++.+.+.+....++..
T Consensus 158 K~~Kv~------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTG 225 (337)
T KOG1580|consen 158 KENKVG------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTG 225 (337)
T ss_pred cccccC------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehh
Confidence 533322 133567788999999999999999999888887773 5678899999999988776666443
Q ss_pred cc--cccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHH
Q 022220 174 TE--LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII 251 (300)
Q Consensus 174 ~~--~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li 251 (300)
+- +..+....+..++.+..+++ ++.+++++.+..+...+|-.-|++....-.|+++.++++++.+++..||+|..++
T Consensus 226 ElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlV 304 (337)
T KOG1580|consen 226 ELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLV 304 (337)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 21 11222334456777888877 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 022220 252 VIGFYVVMW 260 (300)
Q Consensus 252 ~~g~~l~~~ 260 (300)
+.|+..-..
T Consensus 305 F~aL~~D~~ 313 (337)
T KOG1580|consen 305 FSALTADVV 313 (337)
T ss_pred HHHhhhHhh
Confidence 999887544
No 22
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.70 E-value=1.1e-17 Score=139.07 Aligned_cols=225 Identities=16% Similarity=0.174 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220 13 SVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT 92 (300)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~ 92 (300)
..|+...++|+..+-++++...|.+|++...++++-.-....+.+++|+++|.|.++. ++.|+++|++|++++.
T Consensus 76 ~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV 149 (336)
T KOG2766|consen 76 AKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVV 149 (336)
T ss_pred HHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEE
Confidence 3556677777777888889999999999999999999999999999999999999999 9999999999999985
Q ss_pred hccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHh
Q 022220 93 FYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV 172 (300)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (300)
+.+-... +...+.+...|+++.+++|-+||+.++..+.+.|+.+ ....+....++|+++...-....
T Consensus 150 ~sDV~ag------------d~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ~i~~ 216 (336)
T KOG2766|consen 150 FSDVHAG------------DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQFIFE 216 (336)
T ss_pred Eeeeccc------------cccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 4221111 1134677889999999999999999999999999986 89999999999999988884432
Q ss_pred hcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHH
Q 022220 173 VTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIV 252 (300)
Q Consensus 173 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~ 252 (300)
..... ...++......+. ..+++.+-|.+--..+|..+++..++-..+.-.++.+. ..||-+.++...+..+.+.
T Consensus 217 ~~~~~--tl~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~ 291 (336)
T KOG2766|consen 217 RHHVS--TLHWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIA 291 (336)
T ss_pred cccee--eEeehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHH
Confidence 22221 1111222222222 44466666777777789999999999999999999998 6688889999999999999
Q ss_pred HHHHHHhhc
Q 022220 253 IGFYVVMWG 261 (300)
Q Consensus 253 ~g~~l~~~~ 261 (300)
.|++++..+
T Consensus 292 ~GliiYs~r 300 (336)
T KOG2766|consen 292 TGLIIYSTR 300 (336)
T ss_pred HhhEEeecc
Confidence 999998443
No 23
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.68 E-value=5.6e-15 Score=127.09 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=170.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220 11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV 90 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l 90 (300)
++++..++..-++++++++.+.|.++++++++..+++.++..++|++++++++|+|++++ ||.++.+.++|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 456788999999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHH
Q 022220 91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFS 169 (300)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 169 (300)
+........+.. .+.+. +......+...|.++.++++++-+...+..++.+|+.+ +....+......+.++.++..
T Consensus 87 v~~~~~~~~~~~--~~~~~-~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~ 163 (244)
T PF04142_consen 87 VQLSSSQSSDNS--SSSSV-HHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLAL 163 (244)
T ss_pred eecCCccccccc--ccccc-ccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 843221111100 00000 00113456789999999999999999999999999985 344555555666666665554
Q ss_pred HHhhcc-cccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhh
Q 022220 170 LTVVTE-LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGA 248 (300)
Q Consensus 170 ~~~~~~-~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~ 248 (300)
...+.. ..+.. ...++-...+.-++...++=.+....+|+.+...-+....+..+.+.++++++++.+++....+|.
T Consensus 164 ~~~~~~~~~~~g--~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~ 241 (244)
T PF04142_consen 164 LLSDGSAISESG--FFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGA 241 (244)
T ss_pred hcccccccccCC--chhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhe
Confidence 433221 11110 111222223333444444555566789999999999999999999999999999999999999998
Q ss_pred HHH
Q 022220 249 VII 251 (300)
Q Consensus 249 ~li 251 (300)
.++
T Consensus 242 ~~V 244 (244)
T PF04142_consen 242 ALV 244 (244)
T ss_pred ecC
Confidence 753
No 24
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.63 E-value=9.5e-14 Score=121.70 Aligned_cols=238 Identities=18% Similarity=0.165 Sum_probs=179.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220 11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV 90 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l 90 (300)
.+++..++..-++++++.+.++|.++.+.+++..++..++-.+.|+++..+++++|++++ ||.+..+.+.|+.+
T Consensus 88 ~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~ 161 (345)
T KOG2234|consen 88 APRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVAL 161 (345)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHH
Confidence 345678888899999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCh-hHHHHHHHHHHHHHHHHHHH
Q 022220 91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPA-LIVMLCYQYFFSTILAAMFS 169 (300)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 169 (300)
+.....+... ..+.....+...|....+.+++.-+...+..++.+|+.+. .+..+.-..+++.++.+...
T Consensus 162 vQ~~~~~~~~---------a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~ 232 (345)
T KOG2234|consen 162 VQLPSLSPTG---------AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTI 232 (345)
T ss_pred HhccCCCCCC---------ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9522111111 0001345678899999999999999999999999998753 33444445555655555555
Q ss_pred HHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhH
Q 022220 170 LTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAV 249 (300)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~ 249 (300)
+..+.....|. ....+|-...+.-++....+=.+....+|+.+-..-+....+..+++.+.++.+++.+||....+|..
T Consensus 233 ~~~d~~~i~~~-gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~ 311 (345)
T KOG2234|consen 233 LLQDGEAINEY-GFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGAL 311 (345)
T ss_pred hhccccccccC-CccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 54432211121 11223333444444444555555557778888888888888999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 022220 250 IIVIGFYVVMWGKAK 264 (300)
Q Consensus 250 li~~g~~l~~~~~~~ 264 (300)
+++.++.++...+.+
T Consensus 312 lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 312 LVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHHHHHhhcCCcc
Confidence 999999999844443
No 25
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.60 E-value=2.7e-14 Score=106.75 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHH
Q 022220 123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT 202 (300)
Q Consensus 123 ~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 202 (300)
.++++++++++++..+..|...++.+ |...+..+.+...+++..+.+... +.+.....+...|..+...|+ ++++++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g-~~~~~~~~~~k~~lflilSGl-a~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTG-NWQAGGEIGPKSWLFLILSGL-AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcC-ceecccccCcceehhhhHHHH-HHHHHH
Confidence 57899999999999999999988885 888899998888887777766443 222222236678888888885 889999
Q ss_pred HHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220 203 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 203 ~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~ 259 (300)
.+|+++++...++++..+..+.|+++++++++++||++|..+++|+++|.+|..++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999999987754
No 26
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.57 E-value=9.4e-14 Score=118.66 Aligned_cols=223 Identities=19% Similarity=0.226 Sum_probs=174.7
Q ss_pred CCCHH-HHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhh
Q 022220 9 TVTTS-VLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAG 87 (300)
Q Consensus 9 ~~~~~-~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~G 87 (300)
+..|+ ..+++...|++.++...+-+.+++|++.+..++..++.++|+.+++.+|.-||+++. -..-+++..+|
T Consensus 77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~G 150 (349)
T KOG1443|consen 77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVG 150 (349)
T ss_pred CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhh
Confidence 55665 456777899999999999999999999999999999999999999999999999998 77777777778
Q ss_pred hhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC----hhHHHHHHHHHHHHH
Q 022220 88 AFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP----ALIVMLCYQYFFSTI 163 (300)
Q Consensus 88 v~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~ 163 (300)
+.+++. + ..+....|.++..++.++-++.....+..+++.| +|...++...-.-.+
T Consensus 151 lflft~-K-------------------sTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~ 210 (349)
T KOG1443|consen 151 LFLFTY-K-------------------STQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSI 210 (349)
T ss_pred eeEEEe-c-------------------ccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHH
Confidence 877743 2 2345678999999999999998888888888754 678888877777777
Q ss_pred HHHHHHHHhhccccc-----ceecchhhHH-H---HHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHH
Q 022220 164 LAAMFSLTVVTELSA-----WKLRLDVGLF-A---IAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVI 234 (300)
Q Consensus 164 ~~~~~~~~~~~~~~~-----~~~~~~~~~~-~---ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~ 234 (300)
.++|..+.+|+.... |+..+....+ . +...|..+.++. ..-+..+.+++....++.....-+.+.+++.+
T Consensus 211 ~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~-~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~i 289 (349)
T KOG1443|consen 211 GLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLE-FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAII 289 (349)
T ss_pred HHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHH-HHHHheeeeccceeeeHHHHHHHHHHHHHHHH
Confidence 788888877765332 2221221111 1 222233222222 23335678899999999999999999999999
Q ss_pred HhcCCcchhhhhhhHHHHHHHHHH
Q 022220 235 IFGDGLFLGSLVGAVIIVIGFYVV 258 (300)
Q Consensus 235 ~~ge~~~~~~~~G~~li~~g~~l~ 258 (300)
+.+|.++...|.|..+...|+.+.
T Consensus 290 i~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 290 ILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HhhcchhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999988
No 27
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.7e-13 Score=117.07 Aligned_cols=236 Identities=17% Similarity=0.191 Sum_probs=191.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220 11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV 90 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l 90 (300)
.++.|+.+...++.+.++..|.|.|++|++--...+-.++--+-++++..+..|.|.+.. +.....+.-.|+.+
T Consensus 79 ~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~------eYl~~~LIs~Gvsi 152 (327)
T KOG1581|consen 79 GVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSF------EYLVAFLISLGVSI 152 (327)
T ss_pred CCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcH------HHHHHHHHHhheee
Confidence 344678888999999999999999999999988889999999999999999999999999 99999999999988
Q ss_pred hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHH
Q 022220 91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFS 169 (300)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 169 (300)
.++.+.... .......+...|+.++...-++-+..+..+.++.+++. ++..++++.++++++.-....
T Consensus 153 F~l~~~s~s-----------~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~l 221 (327)
T KOG1581|consen 153 FSLFPNSDS-----------SSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYL 221 (327)
T ss_pred EEEecCCCC-----------ccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhh
Confidence 865432221 11133467889999999999999999999999999875 789999999999999877775
Q ss_pred HHhhcccc--cceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhh
Q 022220 170 LTVVTELS--AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVG 247 (300)
Q Consensus 170 ~~~~~~~~--~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G 247 (300)
+....-.. .+.-..+..++-++...+ |..+++.+.++.+++.|+...+.++.++-++++.++.+.+|.+++..||+|
T Consensus 222 i~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g 300 (327)
T KOG1581|consen 222 ILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLG 300 (327)
T ss_pred hcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccC
Confidence 43222111 111112334444555555 556778888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccc
Q 022220 248 AVIIVIGFYVVMWGKAK 264 (300)
Q Consensus 248 ~~li~~g~~l~~~~~~~ 264 (300)
..+++.|+.+-...+++
T Consensus 301 ~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 301 VLIVFGGIFLEILLKKK 317 (327)
T ss_pred eeeehHHHHHHHHHHHh
Confidence 99999999987765555
No 28
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.1e-12 Score=113.54 Aligned_cols=236 Identities=14% Similarity=0.138 Sum_probs=194.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhh
Q 022220 7 FPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIA 86 (300)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~ 86 (300)
.++++++..++++...++..+..+.--.+++|.+....+++.+..|+++++....++|.+++.. .+.++...++
T Consensus 69 ~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~ 142 (314)
T KOG1444|consen 69 FRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMII 142 (314)
T ss_pred cCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHH
Confidence 3778899999999999999999999999999999999999999999999999999999999998 8888888887
Q ss_pred hhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHH
Q 022220 87 GAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILA 165 (300)
Q Consensus 87 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (300)
|...... ++......|..+++...++-+.+.+..|+..+..+ +...+.++..+.+...+
T Consensus 143 ~s~~~~~--------------------~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l 202 (314)
T KOG1444|consen 143 GSVAAAF--------------------TDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPL 202 (314)
T ss_pred HHHhhcc--------------------ccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHH
Confidence 7776632 11233345899999999999999999998888764 56778889998888888
Q ss_pred HHHHHHhhccc---ccc-eecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcc
Q 022220 166 AMFSLTVVTEL---SAW-KLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLF 241 (300)
Q Consensus 166 ~~~~~~~~~~~---~~~-~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~ 241 (300)
....++.++-. .+. +......+..+...++++.++.|+.+ ++.+..++...++++..+-..+.+-+.++.+++.+
T Consensus 203 ~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~ 281 (314)
T KOG1444|consen 203 LILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFT 281 (314)
T ss_pred HHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCceec
Confidence 87776554311 010 11134457778888888888988888 99999999999999988888888888888888999
Q ss_pred hhhhhhhHHHHHHHHHHhhccccccccc
Q 022220 242 LGSLVGAVIIVIGFYVVMWGKAKEENTI 269 (300)
Q Consensus 242 ~~~~~G~~li~~g~~l~~~~~~~~~~~~ 269 (300)
+..++|..+-++|-.++.+.+.++++.+
T Consensus 282 ~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 282 FLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred hhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 9999999999999999988776655544
No 29
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.50 E-value=9.3e-14 Score=107.04 Aligned_cols=125 Identities=15% Similarity=0.334 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 022220 131 ILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM 210 (300)
Q Consensus 131 ~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~ 210 (300)
++|+.+.+..|+..++.+ +....++++..+.+ .++......... +...+...+...++.+++++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 468899999999999975 99999999999998 666655444322 22235567788888999888999999999999
Q ss_pred ccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220 211 RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 211 ~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~ 259 (300)
+.+++.++.+..++|+++.++++++++|++++.+++|+++++.|+.+..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 30
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.44 E-value=7.9e-13 Score=111.68 Aligned_cols=228 Identities=12% Similarity=0.153 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhcc
Q 022220 16 WKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYK 95 (300)
Q Consensus 16 ~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~ 95 (300)
...+.-++|...+..++|.|+.+++++.-+++....-+|+.+++.-+++.+++.+ +|+|+....+|++++...+
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d 160 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD 160 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee
Confidence 4445577888889999999999999999999999999999999999999999999 9999999999999884321
Q ss_pred CCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHHHHhh-
Q 022220 96 GPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVV- 173 (300)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (300)
-...+ ++-.+.++.+.|+.+.+.+-+.-|+.+++.+|.+++.+ +|....+|..+++.++...++....
T Consensus 161 ~~~~~----------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~y 230 (372)
T KOG3912|consen 161 VHLVT----------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYY 230 (372)
T ss_pred ccccc----------CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 11111 01123466788999999999999999999999999875 7999999999999776655554331
Q ss_pred ---c-cc-----ccce-------ecchhhHHHHHHHHHHHHHHHHHHHHHH-HhccCceeeecchhhHHHHHHHHHHHHh
Q 022220 174 ---T-EL-----SAWK-------LRLDVGLFAIAYSAVIGAAFLTTLLLWC-LMRAGPLYVSMFKPLAILFSTVMGVIIF 236 (300)
Q Consensus 174 ---~-~~-----~~~~-------~~~~~~~~~ll~~g~~~~~~~~~~~~~a-l~~~~a~~~s~~~~~~pv~a~~l~~~~~ 236 (300)
+ +. ..|. .....-.+.+...|...+..-|-+-..+ -|+.++++-.++-.+...+-.+++....
T Consensus 231 i~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~ 310 (372)
T KOG3912|consen 231 IPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMG 310 (372)
T ss_pred eecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHH
Confidence 1 10 0111 0000112333344444333333333333 3778999999999999999999999999
Q ss_pred cCCcchhhhhhhHHHHHHHHHHh
Q 022220 237 GDGLFLGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 237 ge~~~~~~~~G~~li~~g~~l~~ 259 (300)
.|.+...|+.|.++.+.|+.++.
T Consensus 311 ~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 311 WEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986
No 31
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.3e-13 Score=112.94 Aligned_cols=238 Identities=13% Similarity=0.067 Sum_probs=188.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220 10 VTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF 89 (300)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ 89 (300)
++.+..+.+..+.+...+...+-+.+++|.+++...+=.++..+|+.++.++++|+|-+.. ...+..+.+.|..
T Consensus 97 ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 97 LDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFG 170 (347)
T ss_pred ccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccc------cceeehhheehhe
Confidence 4556667777888888888888889999999999999999999999999999999999998 6666665555554
Q ss_pred hhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHH
Q 022220 90 VVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMF 168 (300)
Q Consensus 90 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (300)
+= . ++++..+.....|.++.+.+.++-|+..+..|+...... .-+.++.+.+..+.++.+|.
T Consensus 171 lG-----v------------dqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpl 233 (347)
T KOG1442|consen 171 LG-----V------------DQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPL 233 (347)
T ss_pred ec-----c------------ccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHH
Confidence 32 1 112234567788999999999999999999887766653 35688889999999999988
Q ss_pred HHHhhcccccce---ecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhh
Q 022220 169 SLTVVTELSAWK---LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSL 245 (300)
Q Consensus 169 ~~~~~~~~~~~~---~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~ 245 (300)
..+..+-...+. .+....|..+...|+++..++|.-. +=+|..+|.+-++-..-.-..-.++++.+++|..+..-|
T Consensus 234 l~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg-~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lww 312 (347)
T KOG1442|consen 234 LILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTG-WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWW 312 (347)
T ss_pred HHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheee-EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhee
Confidence 876543222222 2244566667777888777777655 668999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccccccccccC
Q 022220 246 VGAVIIVIGFYVVMWGKAKEENTIDD 271 (300)
Q Consensus 246 ~G~~li~~g~~l~~~~~~~~~~~~~~ 271 (300)
-|-.+++.|...+.+.|+.+.+++.+
T Consensus 313 tsn~~vLvgs~~YT~vk~~em~~~~~ 338 (347)
T KOG1442|consen 313 TSNIVVLVGSLAYTLVKEHEMRKASA 338 (347)
T ss_pred eeeEEEEehhHHHHHHHHHHHHhhcc
Confidence 99999999999999987766555433
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.27 E-value=8.4e-11 Score=94.14 Aligned_cols=138 Identities=15% Similarity=0.209 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc------ChhHHHHHHHHHHHHHHHHHHHHHhhccccccee--------c-chhh
Q 022220 122 GGFYLAAQAILISAWYILQAITLKEF------PALIVMLCYQYFFSTILAAMFSLTVVTELSAWKL--------R-LDVG 186 (300)
Q Consensus 122 G~~~~l~aa~~~a~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~ 186 (300)
|.++++.+.++.+++.+..|+..++. .++..+..+....+.+...+..+..+........ . +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999999882 2799999999999999999998877654311110 0 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 187 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 187 ~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
+..++..|+++. ......+..+++.+|...+++..+..+..++++++++||++++.+++|.++.+.|.++|.|
T Consensus 81 ~~~~~~~~~~~~-~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAF-LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 566666666554 4455555999999999999999999999999999999999999999999999999988754
No 33
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.26 E-value=4.8e-11 Score=96.11 Aligned_cols=210 Identities=17% Similarity=0.200 Sum_probs=155.6
Q ss_pred HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhccCCCccCCCCC
Q 022220 26 CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLD 105 (300)
Q Consensus 26 ~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~~ 105 (300)
...++.|..|+...+++.++.+..+..-|+.+++++.+|+|+... +++++++++.|+++++..+
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D---------- 127 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD---------- 127 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc----------
Confidence 678899999999999999999999999999999999999999999 9999999999999884211
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC--hhHHHHHHHHHHHHHHH-HHHHHHhhcccccceec
Q 022220 106 IASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP--ALIVMLCYQYFFSTILA-AMFSLTVVTELSAWKLR 182 (300)
Q Consensus 106 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 182 (300)
+.....+.|+.+++.+++.-|+|-++.|+...+.+ +....+.-..++...+. .+.........+.|...
T Consensus 128 --------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsF 199 (290)
T KOG4314|consen 128 --------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSF 199 (290)
T ss_pred --------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHH
Confidence 12345678999999999999999999999888753 22222222222222221 11111111223333321
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 183 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 183 ~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
...-|..+...+.+.... .++.+.++....|...|+-+..........+.++-+-..+...+.|..+|++|..+...
T Consensus 200 A~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii 276 (290)
T KOG4314|consen 200 AAAPWGCLCGAAGLSLAF-NFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII 276 (290)
T ss_pred hhCCchhhhhHHHHHHHH-hhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence 223456666665544433 34455888899999999999999899999999977778899999999999999888654
No 34
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.18 E-value=5e-10 Score=99.68 Aligned_cols=139 Identities=13% Similarity=0.104 Sum_probs=110.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccce--ecchhhHHHHHHHH
Q 022220 117 SNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK--LRLDVGLFAIAYSA 194 (300)
Q Consensus 117 ~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~g 194 (300)
++...|++++++++++|+...+..|.. .+.+ +....+++..++.++..+......+ ..... ..+...+ .....+
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~ 79 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKI-FMLAVS 79 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHH-HHHHHH
Confidence 355689999999999999999998754 5565 9999999999998877766543311 11110 0012222 333456
Q ss_pred HHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220 195 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 195 ~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~ 259 (300)
.++.+..+.++++++++.+++.++++.++.|+++.++++++++|+++..+++|.++.++|+.+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999988765
No 35
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.17 E-value=2.2e-10 Score=96.64 Aligned_cols=230 Identities=12% Similarity=0.101 Sum_probs=177.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhh
Q 022220 7 FPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIA 86 (300)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~ 86 (300)
++..++ +-....+.+......+-..++.|++--.-.++.++--+-+++.+.++-+.|.+.. +.++.++...
T Consensus 101 ~r~iP~---rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~l 171 (367)
T KOG1582|consen 101 RRVIPW---RTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSL 171 (367)
T ss_pred ceecch---hHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHH
Confidence 344455 4455666666777777788888887777778888888999999999999999999 9999999999
Q ss_pred hhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHH
Q 022220 87 GAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILA 165 (300)
Q Consensus 87 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (300)
|+.+..+.+..- .+..+..|..+...|-++-|.-..++++.++..+ +...+.++...++.+.+
T Consensus 172 Gli~FTLADs~~----------------sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vfl 235 (367)
T KOG1582|consen 172 GLIWFTLADSQT----------------SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFL 235 (367)
T ss_pred HHHhhhhccccc----------------CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHH
Confidence 999887643221 2345567999999999999999999999999886 56788888888888888
Q ss_pred HHHHHHhhcccccceec---chhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcch
Q 022220 166 AMFSLTVVTELSAWKLR---LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 242 (300)
Q Consensus 166 ~~~~~~~~~~~~~~~~~---~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~ 242 (300)
+.......+-...|..- +.......+..+. .+.++......-++..+|..+..+....-.+++++++++|..++|.
T Consensus 236 f~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~ 314 (367)
T KOG1582|consen 236 FAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTE 314 (367)
T ss_pred HHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHH
Confidence 87777665555555311 1112222222222 4455556665677889999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhcc
Q 022220 243 GSLVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 243 ~~~~G~~li~~g~~l~~~~~ 262 (300)
...-|..+++.|+++-.+.+
T Consensus 315 qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 315 QYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHhhhhHHHHHHHHhhcccC
Confidence 99999999999999988765
No 36
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1e-09 Score=92.94 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=167.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc-chhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhh
Q 022220 8 PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYS-SPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIA 86 (300)
Q Consensus 8 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~-~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~ 86 (300)
++++.|++...+. .....+.+-+.++++- |...=.++.+-.++.+++++|++.|+|.+.+ |+.++.+.-+
T Consensus 60 ~kiplk~Y~i~V~---mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi 130 (330)
T KOG1583|consen 60 PKIPLKDYAITVA---MFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI 130 (330)
T ss_pred CCCchhhhheehh---eeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence 5566655443332 2244455566777764 5555556677899999999999999999999 9999999999
Q ss_pred hhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHH
Q 022220 87 GAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILA 165 (300)
Q Consensus 87 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (300)
|+.+.++.+.++... ...+-+.+++......|..|+.+..++-+.-|.-.+.++...+++. ++-..+++.-..+....
T Consensus 131 GiiIcTl~s~~d~~~-~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~F 209 (330)
T KOG1583|consen 131 GIIICTLFSSKDGRS-KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLF 209 (330)
T ss_pred hheeEEeecCcchhh-hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchH
Confidence 999998776655543 2223445555566778899999999999999999999999999984 78888888877765543
Q ss_pred HHHHH-Hh-----hcccccceec-----chhhHHHHHHHHHHHHHHHHHHH---HHHHhccCceeeecchhhHHHHHHHH
Q 022220 166 AMFSL-TV-----VTELSAWKLR-----LDVGLFAIAYSAVIGAAFLTTLL---LWCLMRAGPLYVSMFKPLAILFSTVM 231 (300)
Q Consensus 166 ~~~~~-~~-----~~~~~~~~~~-----~~~~~~~ll~~g~~~~~~~~~~~---~~al~~~~a~~~s~~~~~~pv~a~~l 231 (300)
+...- +. ....+.+..+ -+..|..++. .....|.|. +..-.+.++-+++++..+.-.++.++
T Consensus 210 lf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~----n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~ 285 (330)
T KOG1583|consen 210 LFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF----NVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLF 285 (330)
T ss_pred HHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHH----HHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhh
Confidence 32210 00 0001111110 1222333322 233444443 23336678889999999999999999
Q ss_pred HHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220 232 GVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 232 ~~~~~ge~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
+.+.|..++++.-|+|.+++.+|..++.-.
T Consensus 286 SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 286 SIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred eeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887643
No 37
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.16 E-value=2.9e-09 Score=91.77 Aligned_cols=226 Identities=14% Similarity=0.150 Sum_probs=155.4
Q ss_pred CCCCCH--HHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhh-hhHHHHHHHHHHHhhhccccccccccchhhhhHh
Q 022220 7 FPTVTT--SVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLN-LIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIV 83 (300)
Q Consensus 7 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~-~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l 83 (300)
+|.++. +.+..-++.|++-++++..+|.+.++.+++.+..+.. .+-+.+.+++.++++|.-+..+ -..-..++++
T Consensus 35 ~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~--~~~G~~Al~l 112 (269)
T PF06800_consen 35 QPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQ--KIIGFLALVL 112 (269)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcch--HHHHHHHHHH
Confidence 345543 6777777888888999999999999999999999975 7888899999999999888761 1123447777
Q ss_pred hhhhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHH
Q 022220 84 SIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTI 163 (300)
Q Consensus 84 ~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (300)
.++|+.+.+..+++... .++..+...|....+.+.+.|..|.+..+.. +. ++.....-+. ++.+
T Consensus 113 iiiGv~lts~~~~~~~~------------~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~-~~~~~~lPqa-iGm~ 176 (269)
T PF06800_consen 113 IIIGVILTSYQDKKSDK------------SSSKSNMKKGILALLISTIGYWIYSVIPKAF--HV-SGWSAFLPQA-IGML 176 (269)
T ss_pred HHHHHHHhccccccccc------------cccccchhhHHHHHHHHHHHHHHHHHHHHhc--CC-ChhHhHHHHH-HHHH
Confidence 88888877542221111 0124566779999999999999998885542 22 3554444333 2333
Q ss_pred HHH-HHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcch
Q 022220 164 LAA-MFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL 242 (300)
Q Consensus 164 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~ 242 (300)
+.. .+......+ .+ .. ..+.-+..|++ -.++..++..+.++.+.+..=.+..+.++++.+.+.+++||+=+.
T Consensus 177 i~a~i~~~~~~~~--~~---~k-~~~~nil~G~~-w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ 249 (269)
T PF06800_consen 177 IGAFIFNLFSKKP--FF---EK-KSWKNILTGLI-WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTK 249 (269)
T ss_pred HHHHHHhhccccc--cc---cc-chHHhhHHHHH-HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCch
Confidence 222 222222111 11 11 22233444443 356677788999999999999999999999999999999998776
Q ss_pred hhh----hhhHHHHHHHHH
Q 022220 243 GSL----VGAVIIVIGFYV 257 (300)
Q Consensus 243 ~~~----~G~~li~~g~~l 257 (300)
.++ +|+++++.|..+
T Consensus 250 ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 250 KEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hhHHHHHHHHHHHHHhhhc
Confidence 644 588888887654
No 38
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.14 E-value=1.4e-09 Score=96.12 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHH
Q 022220 123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT 202 (300)
Q Consensus 123 ~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 202 (300)
.++.++++++++.+.+..|+..++.+ +. ..+....+++...++..... ....|..... .++..+..+.++....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYL-AQVGWSRLPA-TFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhc-ccCCCCCcch-hhHHHHHHHHHHHHHHH
Confidence 46789999999999999998887754 33 35555566666666655321 1123332222 33444444555777888
Q ss_pred HHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 203 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 203 ~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
.++++++++.+++.++++.++.|+++.+++++++||+++..+++|.++++.|+.+...
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999988764
No 39
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.14 E-value=8.7e-11 Score=96.35 Aligned_cols=236 Identities=16% Similarity=0.146 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
.++.+.++..+++-+...+.-..+++|++....+++.++..+.++.....++|.|.+.. .....++.+..-+.-
T Consensus 65 ~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va 138 (309)
T COG5070 65 LTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVA 138 (309)
T ss_pred hhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHh
Confidence 34455667777777788888889999999999999999999999999999999999988 776666554443322
Q ss_pred hhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHHH
Q 022220 92 TFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSL 170 (300)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (300)
.. ++.+. . .........|.+++...++.-+.+....|+..+-.. .....+++.++.+..++..+.+
T Consensus 139 ~w--~D~q~-------~----~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~ 205 (309)
T COG5070 139 TW--GDQQA-------S----AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSF 205 (309)
T ss_pred cc--chhhH-------H----HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHH
Confidence 11 11100 0 011123345888889999999999888887776543 4678899999999999988888
Q ss_pred Hhhccccc-ce-ecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhh
Q 022220 171 TVVTELSA-WK-LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGA 248 (300)
Q Consensus 171 ~~~~~~~~-~~-~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~ 248 (300)
++++-.+. .. -.+.....+++..|+.+.++.|.. .|+++..+.+..+++..++-.-..+-|.++++|+.+...+...
T Consensus 206 ~~edws~~n~annl~~d~l~am~ISgl~svgiSy~s-aWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~si 284 (309)
T COG5070 206 LFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCS-AWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSI 284 (309)
T ss_pred HhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhcc-ceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHH
Confidence 76542111 11 112334567777888666666654 4999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhccccccc
Q 022220 249 VIIVIGFYVVMWGKAKEEN 267 (300)
Q Consensus 249 ~li~~g~~l~~~~~~~~~~ 267 (300)
.+-.++-.++...+.++++
T Consensus 285 llGflsg~iYavaks~k~q 303 (309)
T COG5070 285 LLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888876777665554333
No 40
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.11 E-value=1.3e-09 Score=94.86 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhccc---ccceecchh-hHHHHHHHHHH
Q 022220 121 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTEL---SAWKLRLDV-GLFAIAYSAVI 196 (300)
Q Consensus 121 ~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~ll~~g~~ 196 (300)
.|..+.++++++|+...+..|. ..+.+ +....+++++++++++.+......... ..++..... .+..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3889999999999999999887 45564 999999999999888766654332110 111111112 23345555554
Q ss_pred HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220 197 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 197 ~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~ 259 (300)
..+.+.++++++++++++.++.+.++.|++++++++++++|+++..+++|..+.++|+.+..
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999987653
No 41
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.03 E-value=5.9e-09 Score=92.46 Aligned_cols=230 Identities=18% Similarity=0.244 Sum_probs=131.0
Q ss_pred HHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhcc
Q 022220 17 KIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYK 95 (300)
Q Consensus 17 ~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~ 95 (300)
..+..|++. .++..+.+.|+.+.|++..+.+..+.-++.++++..++|||++++ ++.|..+++.|..++.. .
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~-~ 123 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI-F 123 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE-e
Confidence 445556655 788889999999999999999999999999999999999999999 99999999999988743 3
Q ss_pred CCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHH-------HHHH
Q 022220 96 GPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTIL-------AAMF 168 (300)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 168 (300)
++......+. ++..+ .-..... ......... +...+.....+|..++. ..........+++.. ...+
T Consensus 124 ~~~~~~~~t~-~~l~~-~~~~~~f-l~y~~~~~~-~~~~L~~~~~~r~g~~~--i~vyi~i~sl~Gs~tvl~~K~i~~~i 197 (300)
T PF05653_consen 124 APKEEPIHTL-DELIA-LLSQPGF-LVYFILVLV-LILILIFFIKPRYGRRN--ILVYISICSLIGSFTVLSAKAISILI 197 (300)
T ss_pred CCCCCCcCCH-HHHHH-HhcCcce-ehhHHHHHH-HHHHHHHhhcchhcccc--eEEEEEEeccccchhhhHHHHHHHHH
Confidence 3332211100 00000 0000111 111111111 11222222212211111 110000000111110 0011
Q ss_pred HHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhH-HHHHHHHHHHHhcCC--cchhh-
Q 022220 169 SLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA-ILFSTVMGVIIFGDG--LFLGS- 244 (300)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~-pv~a~~l~~~~~ge~--~~~~~- 244 (300)
.....++ ..+ ..+..|..++. -+.+........++++++.+++.+.++.+.. ...+++-+.++++|. .++.+
T Consensus 198 ~~~~~g~-~~f--~~~~~y~l~~~-~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~ 273 (300)
T PF05653_consen 198 KLTFSGD-NQF--TYPLTYLLLLV-LVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQI 273 (300)
T ss_pred HHHhcCc-hhh--hhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHH
Confidence 1101111 111 12233433333 3456778888889999999999988887765 556666788888985 45533
Q ss_pred ---hhhhHHHHHHHHHHhhccc
Q 022220 245 ---LVGAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 245 ---~~G~~li~~g~~l~~~~~~ 263 (300)
..|+.+++.|+++....|+
T Consensus 274 ~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 274 IGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHhhheeeccCc
Confidence 4577888888888755433
No 42
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.94 E-value=2.1e-08 Score=91.28 Aligned_cols=139 Identities=13% Similarity=0.137 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHH
Q 022220 121 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAF 200 (300)
Q Consensus 121 ~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 200 (300)
.-...+++.-++|+.+.++.|..++..-++....++++.+++++++++.+..+... .+...+...+..+..+|+++ .+
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~~ 90 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-SM 90 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-HH
Confidence 34567778889999999999999988766899999999999999988877543211 11111234566777778776 45
Q ss_pred HHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH------hcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220 201 LTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII------FGDGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 201 ~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~------~ge~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
.+.+++.++++++++.++++.++.|+++.++++++ ++|+++..+++|.++.++|+.+....
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 66688899999999999999999999999999999 69999999999999999999887653
No 43
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.93 E-value=1e-09 Score=83.40 Aligned_cols=76 Identities=22% Similarity=0.402 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220 11 TTSVLWKIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF 89 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ 89 (300)
+++.+.++...|+++ ..++.+++.|+++.+ +.++++.++.|+++.+++++++|||++++ ++.++.++++|+.
T Consensus 30 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~ 102 (113)
T PF13536_consen 30 RRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVI 102 (113)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHH
Confidence 334556677778888 699999999999999 58899999999999999999999999999 9999999999999
Q ss_pred hhhh
Q 022220 90 VVTF 93 (300)
Q Consensus 90 ll~~ 93 (300)
++..
T Consensus 103 li~~ 106 (113)
T PF13536_consen 103 LIAW 106 (113)
T ss_pred HHhh
Confidence 9953
No 44
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.93 E-value=6.7e-09 Score=88.51 Aligned_cols=206 Identities=13% Similarity=0.040 Sum_probs=126.4
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhccCCC-----------ccCCCCCcccc
Q 022220 41 PTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPP-----------IVRPRLDIASL 109 (300)
Q Consensus 41 ~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~~~~-----------~~~~~~~~~~~ 109 (300)
........+..++++++..+.+.++|.+.. ++++..+...|+....+.+... ..+.++...+
T Consensus 4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~- 76 (222)
T TIGR00803 4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK- 76 (222)
T ss_pred ccchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc-
Confidence 334556677888888888888888888877 8888888888876532211100 0000000000
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHH-HHHHHHHHHHHHHHHHHHhhcc-cccceecchhhH
Q 022220 110 DQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVM-LCYQYFFSTILAAMFSLTVVTE-LSAWKLRLDVGL 187 (300)
Q Consensus 110 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 187 (300)
.....+...|..+.+.++++-+...+..++..|+.+..... ......++.+............ ...+.. ..++
T Consensus 77 ---~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 151 (222)
T TIGR00803 77 ---TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGF--FIGY 151 (222)
T ss_pred ---ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCc--ccCC
Confidence 01123556788888888888788888888877765422111 1222222222211111111111 111110 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220 188 FAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 258 (300)
Q Consensus 188 ~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~ 258 (300)
....+.-+++..++..+..+.+|+.++...+....++++++.+++++++||+++..+++|..+++.|++++
T Consensus 152 ~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 152 PTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred chHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 11122222345667777889999999999999999999999999999999999999999999999987653
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.92 E-value=2.8e-08 Score=76.91 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHH
Q 022220 122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL 201 (300)
Q Consensus 122 G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 201 (300)
|.++.+.+.++-+...++.|+-+++.+ ....... . . ...... . .....+++|+++.+++
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~-~----~~~~~~--------~------~p~~~i~lgl~~~~la 61 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-F-I----AALLAF--------G------LALRAVLLGLAGYALS 61 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-H-H----HHHHHH--------h------ccHHHHHHHHHHHHHH
Confidence 677888888888999999998888864 2221111 0 0 000000 0 1122577889999999
Q ss_pred HHHHHHHHhccCceeeecchhhHHHHHHHHHHH--HhcCCcchhhhhhhHHHHHHHHHHhhccc
Q 022220 202 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVI--IFGDGLFLGSLVGAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 202 ~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~--~~ge~~~~~~~~G~~li~~g~~l~~~~~~ 263 (300)
+.+|.+++++.+++.+..+....++...+.++. ++||++|+.+++|.++|++|+++..+.++
T Consensus 62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999998888888875 89999999999999999999999865433
No 46
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.88 E-value=1.2e-08 Score=77.45 Aligned_cols=107 Identities=16% Similarity=0.334 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 022220 156 YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII 235 (300)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~ 235 (300)
++..++.++............+.+.....+.+...+..|+++...++.++.+++++.++ .++.+..++|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555542221111111122345566666777777899999999999995 88899999999999999999
Q ss_pred hcCCcchhhhhhhHHHHHHHHHHhhccc
Q 022220 236 FGDGLFLGSLVGAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 236 ~ge~~~~~~~~G~~li~~g~~l~~~~~~ 263 (300)
++|++++.+++|.+++.+|+.+..+.+.
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999887544
No 47
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.86 E-value=2.9e-08 Score=86.40 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022220 133 ISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRA 212 (300)
Q Consensus 133 ~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~ 212 (300)
|+...+..|...++..++....+++...+.++..+..... .+..++...+..|.++..+.+.++++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566677766655588889999988888776654421 1334566677778888889999999999999
Q ss_pred CceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 213 GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 213 ~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
+++.++++..++|+++.+++.++++|++++.+++|.++.++|+.+...
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999988754
No 48
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.86 E-value=9.9e-10 Score=82.45 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220 10 VTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF 89 (300)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ 89 (300)
+++|.|..+.+.|+.+++++.+||.|++...++.+..+..++|+++.+++++++|||++.. +++|+++..+|++
T Consensus 62 ~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gai 135 (140)
T COG2510 62 IGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAI 135 (140)
T ss_pred cCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCee
Confidence 4778899999999999999999999999999999999999999999999999999999999 9999999999998
Q ss_pred hhh
Q 022220 90 VVT 92 (300)
Q Consensus 90 ll~ 92 (300)
+++
T Consensus 136 lvs 138 (140)
T COG2510 136 LVS 138 (140)
T ss_pred eEe
Confidence 874
No 49
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.84 E-value=4.6e-09 Score=80.62 Aligned_cols=79 Identities=24% Similarity=0.485 Sum_probs=74.0
Q ss_pred CCCCCHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhh
Q 022220 7 FPTVTTSVLWKIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSI 85 (300)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~ 85 (300)
.+..+++++......+.++ .+++.+++.|+++.+++.++++.++.|+++.+++++++||+++++ +++|+++++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~ 118 (126)
T PF00892_consen 45 FKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILII 118 (126)
T ss_pred ccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHH
Confidence 3567777888889999997 999999999999999999999999999999999999999999999 999999999
Q ss_pred hhhhhh
Q 022220 86 AGAFVV 91 (300)
Q Consensus 86 ~Gv~ll 91 (300)
.|+.++
T Consensus 119 ~g~~l~ 124 (126)
T PF00892_consen 119 IGVVLI 124 (126)
T ss_pred HHHHHH
Confidence 999876
No 50
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.82 E-value=1e-07 Score=84.69 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHH
Q 022220 123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT 202 (300)
Q Consensus 123 ~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 202 (300)
.+..+...+.|+...+..|....+.+ +....++++.+++++.+++....... . ....++...+..|++.....+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~---~--~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHP---L--PTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHHHHHHHH
Confidence 45567779999999999888877665 99999999999999988776542211 1 133456666777777666777
Q ss_pred HHHHHHH-hccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 203 TLLLWCL-MRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 203 ~~~~~al-~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
.+++.+. ++.+++.++++..+.|+++.+++.+ +||+++..+++|..+.++|+++...
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 8888898 9999999999999999999999986 7999999999999999999988754
No 51
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.76 E-value=1.9e-07 Score=83.22 Aligned_cols=126 Identities=14% Similarity=0.217 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHH
Q 022220 123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT 202 (300)
Q Consensus 123 ~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 202 (300)
.++.++++++|+...+..|...++.+ +....++++.++++...++.. .+ . . .+..++..|++.....+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~---~~-~-~------~~~~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA---RP-K-V------PLNLLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc---CC-C-C------chHHHHHHHHHHHHHHH
Confidence 35678899999999999998888775 999999999988766544321 11 1 1 11223344554445556
Q ss_pred HHHHHHHhc-cCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 203 TLLLWCLMR-AGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 203 ~~~~~al~~-~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
.+++.++++ .+++.++++..+.|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 677788887 5778999999999999999999999999999999999999999988764
No 52
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.68 E-value=4.5e-07 Score=80.65 Aligned_cols=129 Identities=13% Similarity=-0.016 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHH
Q 022220 122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL 201 (300)
Q Consensus 122 G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 201 (300)
+.+++++++++|+...+..|...+..+ |....++++.++.++..++.. .+ ..+. ..+..++. +.+.....
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~---~~--~~~~---~~~~~~~~-~~l~~~~~ 74 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG---FP--RLRQ---FPKRYLLA-GGLLFVSY 74 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc---cc--cccc---ccHHHHHH-HhHHHHHH
Confidence 577889999999999999999888886 999999999999888775421 11 1111 11222222 33344455
Q ss_pred HHHHHHHHh----ccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 202 TTLLLWCLM----RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 202 ~~~~~~al~----~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
..+++.+++ ..++..++++.++.|+++.++++++++|++++.+++|+++.++|+.+...
T Consensus 75 ~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 75 EICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 555556664 46777888999999999999999999999999999999999999988764
No 53
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=2.2e-07 Score=80.81 Aligned_cols=227 Identities=16% Similarity=0.128 Sum_probs=135.1
Q ss_pred HHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhcc
Q 022220 17 KIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYK 95 (300)
Q Consensus 17 ~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~ 95 (300)
+.+-.|++. .++...-|.|..+.|++..+.+..+.-++.++++..++|||++.. ..+|..++++|-.++ +.+
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~i-V~h 137 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTI-VIH 137 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEE-EEe
Confidence 344456666 888888889999999999999999999999999999999999999 999999999999988 445
Q ss_pred CCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHH---------
Q 022220 96 GPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAA--------- 166 (300)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 166 (300)
+|..+.-.+..+-.+.-.+....-..+....+ ..++.-....++. ......+..+.+.+-.+
T Consensus 138 aP~e~~i~t~~el~~~~~~~~Fliy~~~iil~--------~~il~~~~~p~~g-~tnilvyi~i~s~iGS~tV~svKalg 208 (335)
T KOG2922|consen 138 APKEQEIESVEEVWELATEPGFLVYVIIIILI--------VLILIFFYAPRYG-QTNILVYIGICSLIGSLTVMSVKALG 208 (335)
T ss_pred cCcccccccHHHHHHHhcCccHHHHHHHHHHH--------HHHHheeeccccc-ccceeehhhHhhhhcceeeeeHHHHH
Confidence 55443221111000000000111111111111 1111111122221 11222333333332111
Q ss_pred -HHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhH-HHHHHHHHHHHhcCC--cch
Q 022220 167 -MFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA-ILFSTVMGVIIFGDG--LFL 242 (300)
Q Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~-pv~a~~l~~~~~ge~--~~~ 242 (300)
.+-....+..+.. .+..|..++.+.. |........++|++..+++.++.+.+.. ..++++-+.++|+|- .+.
T Consensus 209 ~aiklt~~g~~ql~---~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~ 284 (335)
T KOG2922|consen 209 IAIKLTFSGNNQLF---YPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDA 284 (335)
T ss_pred HHHHHHhcCCcccc---cHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 1111112221111 2334555555444 5667777788999999999998887765 666777788999884 344
Q ss_pred h----hhhhhHHHHHHHHHHhhccc
Q 022220 243 G----SLVGAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 243 ~----~~~G~~li~~g~~l~~~~~~ 263 (300)
. .+.|+..++.|+++....|.
T Consensus 285 ~~i~~~~~Gf~ti~~G~flL~~~kd 309 (335)
T KOG2922|consen 285 LDIAGELCGFVTIFLGIFLLHRTKD 309 (335)
T ss_pred HHHHHHHHhHHHhhheeeEeeeecc
Confidence 4 34688888889888754433
No 54
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.64 E-value=1.1e-06 Score=80.09 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022220 130 AILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCL 209 (300)
Q Consensus 130 a~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al 209 (300)
-.+-..+.+..|..++..+-|+.+..+++.++.++..........+.+... .....+..++.+|++.... +...+.++
T Consensus 58 y~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~~-~~~~~~sl 135 (350)
T PTZ00343 58 YALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLFV-HFGAVISM 135 (350)
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333355677788888887669999999999998765444321111111111 0233566778888866544 56667999
Q ss_pred hccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220 210 MRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 210 ~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~ 259 (300)
++.+++.++++..++|++++++++++++|+++..+++|.+++++|+.+..
T Consensus 136 ~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 136 GLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999999999999998764
No 55
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.63 E-value=8e-07 Score=79.31 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=95.1
Q ss_pred HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 022220 135 AWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGP 214 (300)
Q Consensus 135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a 214 (300)
.+++.+|...++.+.|......++.++.+...+.......+. .. .+..++..++..|++ ....+.+.+.++++.++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~ 91 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKR--LK-ISSALLKLLLPVAIV-HTIGHVTSNVSLSKVAV 91 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCC--CC-CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccH
Confidence 344667888888666999999999888776554411111111 11 134577778888886 47778999999999999
Q ss_pred eeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220 215 LYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 258 (300)
Q Consensus 215 ~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~ 258 (300)
+..+++..+.|+++.++++++++|+++..+++|.+++++|+.+.
T Consensus 92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999764
No 56
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.63 E-value=5.2e-07 Score=77.62 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=110.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccce-ecchhhHHHHHHHHHH
Q 022220 118 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK-LRLDVGLFAIAYSAVI 196 (300)
Q Consensus 118 ~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~g~~ 196 (300)
+...|+++++.+-+.|+.-.... +..+..+ +......+.+.+..++.............+. ...+..+..+...++
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~-kll~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~- 80 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYF-KLLEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL- 80 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHH-HHHccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-
Confidence 34469999999999999887774 4556665 8899999999998888777665432211111 223445555555555
Q ss_pred HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 197 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 197 ~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
-....+.+|.++.++....++|.-.+++|++.+++|.++++|++++.|++..++..+|+....+
T Consensus 81 li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 81 LIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999887654
No 57
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.61 E-value=3.6e-07 Score=68.92 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220 192 YSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 192 ~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~ 259 (300)
..++++.++++.++..++++.+.+.+-.+..+.++++.+++++++||++++.+++|.++++.|+.+..
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33446778899999999999999999999999999999999999999999999999999999998754
No 58
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.60 E-value=1.9e-05 Score=70.91 Aligned_cols=241 Identities=12% Similarity=0.083 Sum_probs=147.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHh-hhhHHHHHHHHHHHhhhcc---ccccccccchhhhhHhhh
Q 022220 10 VTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAML-NLIPAFTFILAIIFRMEKL---KWRSKSSQAKSLGTIVSI 85 (300)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ila~~~~~e~~---~~~~~~~~~~~~~~~l~~ 85 (300)
.+.+.+..-++.|.+-.+++..++.++++...+.+..+. .++-+...++..++++|-. +-. ..+...+|+++.+
T Consensus 68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~lil 145 (345)
T PRK13499 68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVAL 145 (345)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHH
Confidence 355666777777877799999999999999999998884 5889999999999998654 221 1233788889999
Q ss_pred hhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHH-------HHHHHHhhhcChhHHHHHHHH
Q 022220 86 AGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWY-------ILQAITLKEFPALIVMLCYQY 158 (300)
Q Consensus 86 ~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~-------i~~~~~~~~~~~~~~~~~~~~ 158 (300)
+|+.+.+......... ..++..++.+...|++.++.+.+.++.|. ...+...+...++.....-+.
T Consensus 146 iGi~l~s~Ag~~k~~~-------~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~ 218 (345)
T PRK13499 146 IGVAIVGRAGQLKERK-------MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSY 218 (345)
T ss_pred HHHHHHHHhhhhcccc-------cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHH
Confidence 9999886522111110 00000234677889999999999999998 443322111112332222222
Q ss_pred ---HHHHHHHH-HHHHHh--h-cccccceec--c----hhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeee----cch
Q 022220 159 ---FFSTILAA-MFSLTV--V-TELSAWKLR--L----DVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVS----MFK 221 (300)
Q Consensus 159 ---~~~~~~~~-~~~~~~--~-~~~~~~~~~--~----~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s----~~~ 221 (300)
..+.++.- .+.... . .+...+... + ......-+..|+ .=.++...|..+-.+.+..... +.+
T Consensus 219 ~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m 297 (345)
T PRK13499 219 VVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHM 297 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhc
Confidence 23333222 222211 1 111111110 1 112111123333 3356667777777777655443 344
Q ss_pred hhHHHHHHHHHHHHhcCCcc------hhhhhhhHHHHHHHHHHhhc
Q 022220 222 PLAILFSTVMGVIIFGDGLF------LGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 222 ~~~pv~a~~l~~~~~ge~~~------~~~~~G~~li~~g~~l~~~~ 261 (300)
.+..+++.+.|.+ +||.=+ ..-++|++++++|..+....
T Consensus 298 ~~~ViistlwGi~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 298 SFYVLCGNLWGLV-LKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cHHHHHHHHhhhh-hhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 8888999999995 999755 56678999999998887654
No 59
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.48 E-value=7.9e-07 Score=67.09 Aligned_cols=66 Identities=20% Similarity=0.154 Sum_probs=60.9
Q ss_pred HHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220 21 LSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT 92 (300)
Q Consensus 21 ~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~ 92 (300)
.++++ .++..++..+++..|.+.+..+.++.++++.+++++++|||++.+ +++|+.+.++|+.++.
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 33344 889999999999999999999999999999999999999999999 9999999999998873
No 60
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.36 E-value=1.2e-05 Score=70.61 Aligned_cols=142 Identities=17% Similarity=0.282 Sum_probs=104.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHH
Q 022220 119 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGA 198 (300)
Q Consensus 119 ~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~ 198 (300)
...+..+.+..++.|+......+.............+.+...+.+...+.... . ...... ....+...+..+.+..
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~~~~~~~~~~~~~~ 80 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-E-PRGLRP--ALRPWLLLLLLALLGL 80 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-h-cccccc--cccchHHHHHHHHHHH
Confidence 44577888888899999988888777763324555555776666663322221 1 111111 1112445566667788
Q ss_pred HHHHHHHHHHHhccCceeeecchhhHHHHHHHHHH-HHhcCCcchhhhhhhHHHHHHHHHHhhcccc
Q 022220 199 AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGV-IIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 264 (300)
Q Consensus 199 ~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~-~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~ 264 (300)
...+.+++.++++.++...+.+.++.|+++.++++ ++++|+++..++.|..+.+.|+.+..+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 89999999999999999999999999999999997 7679999999999999999999998775444
No 61
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.23 E-value=1.5e-05 Score=70.74 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHH
Q 022220 122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL 201 (300)
Q Consensus 122 G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 201 (300)
|+++++.++++|+...+..|+.. ..+ +.... ...++.++..........+. .. ....+..-+..|+ .-.++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~~--~~--~~~~~~~g~l~G~-~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLPE--FW--ALSIFLVGLLSGA-FWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCCc--cc--ccHHHHHHHHHHH-HHHhh
Confidence 67889999999999999988765 333 33332 34445554444433322211 11 1122222222233 35677
Q ss_pred HHHHHHHHhccCceeeecchh-hHHHHHHHHHHHHhcCCcchhh----hhhhHHHHHHHHHHhhc
Q 022220 202 TTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLFLGS----LVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 202 ~~~~~~al~~~~a~~~s~~~~-~~pv~a~~l~~~~~ge~~~~~~----~~G~~li~~g~~l~~~~ 261 (300)
+.++..++++.+.+....+.+ +.+++..+++.+++||+++..+ ++|.+++++|+++....
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 899999999999999988888 8999999999999999999999 99999999998886443
No 62
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.12 E-value=6.1e-05 Score=66.95 Aligned_cols=128 Identities=9% Similarity=0.014 Sum_probs=96.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHH
Q 022220 118 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIG 197 (300)
Q Consensus 118 ~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~ 197 (300)
+...|..++++++++|+...+..|...++.+ +....++++.+++++++++...... .+ +..++...+..|++
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~---~~---~~~~~~~~~~~g~~- 80 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL---RF---AKEQRLPLLFYGVS- 80 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc---cC---CHHHHHHHHHHHHH-
Confidence 4467899999999999999999998888876 8999999999999887765431111 11 23455556666664
Q ss_pred HHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220 198 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 198 ~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~ 259 (300)
.+..+.++++++++.+++.++.+..+.|+++.+++. |++. +..+..+.++|+.+..
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~ 136 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLL 136 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheee
Confidence 466677788999999999999999999999988873 5554 3455666677877654
No 63
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.12 E-value=2.9e-05 Score=59.04 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcc
Q 022220 194 AVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 194 g~~~~~~~~~~~~~al~~~~a~~~s~~-~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~ 262 (300)
.+++.++++.++..++++++.+.+=.+ ..+..+.+.+.+++++||++++.+++|..+|++|+.......
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 455668899999999999998776555 468889999999999999999999999999999998875443
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.09 E-value=8e-05 Score=66.89 Aligned_cols=145 Identities=10% Similarity=0.096 Sum_probs=99.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhc-ChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHH
Q 022220 118 NWILGGFYLAAQAILISAWYILQAITLKEF-PALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVI 196 (300)
Q Consensus 118 ~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~ 196 (300)
+...+.++.-.-+++-+...+.+..+.++. ..|..-+++.+..-.++..+......+. ..|.......|+..+.++++
T Consensus 10 ~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~-~~~~~~~~~~~w~y~lla~~ 88 (334)
T PF06027_consen 10 RFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGF-KKWLKVLKRPWWKYFLLALL 88 (334)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcccc-ccchhhcchhHHHHHHHHHH
Confidence 334455555555556666666656665553 2355555555555444544444432222 22222223455666666774
Q ss_pred HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcccc
Q 022220 197 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 264 (300)
Q Consensus 197 ~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~ 264 (300)
-..+..+...|+++++.+.++++.....++++++++++++++.++.+++|+.+.+.|+.+....+..
T Consensus 89 -Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 89 -DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred -HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 4577777779999999999999999999999999999999999999999999999999988776543
No 65
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.01 E-value=9.6e-05 Score=66.00 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhhhcC-h--hHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022220 133 ISAWYILQAITLKEFP-A--LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCL 209 (300)
Q Consensus 133 ~a~~~i~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al 209 (300)
+..+.+.+++..++.. . +..+++.++....+...+.......+.. ....+...+..++ ...++..+.+.++
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~al 85 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSF-LFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3445677788777753 3 7788889888888887776664431111 1112333344444 4567778888999
Q ss_pred hccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhccccccc
Q 022220 210 MRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN 267 (300)
Q Consensus 210 ~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 267 (300)
++++.....+.....|+.+++++++++|++.+..++.+.+++.+|+.+....+.++.+
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 9999999999999999999999999999999999999999999999998776544433
No 66
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.90 E-value=4.7e-05 Score=58.91 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=62.6
Q ss_pred HHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHH--HhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220 18 IFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAII--FRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT 92 (300)
Q Consensus 18 ~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~--~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~ 92 (300)
+...|+.. .++..++..+++..|++.+..+.+..+.++.+.++. ++||+++.. +++|+.+.++|+.++.
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 45667766 999999999999999999999999999888888884 899999999 9999999999999984
No 67
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.88 E-value=0.00018 Score=53.99 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220 194 AVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 194 g~~~~~~~~~~~~~al~~~~a~~~s~~-~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
.+++.++++.++..++++++.+.+=.+ ..+..+.+.+.++++|||++++.+++|.+++++|+.+....
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345667888999999999988765444 66788899999999999999999999999999999988543
No 68
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.87 E-value=4.4e-06 Score=70.89 Aligned_cols=135 Identities=9% Similarity=0.129 Sum_probs=92.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHH
Q 022220 118 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIG 197 (300)
Q Consensus 118 ~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~ 197 (300)
....|..+...+ .++...+++.++..... +......++.+-.+...+..+..... .|. +...-.+++.=|+.+
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~~--v~g--p~g~R~~LiLRg~mG 107 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQP--VIG--PEGKRKWLILRGFMG 107 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEeee--eec--CCCcEEEEEeehhhh
Confidence 556788888888 77778888888887764 45444444444433333333221111 111 111111223334444
Q ss_pred HHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 198 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 198 ~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
+.. ..+.++++++++-+.++++....|+++++++|++++|+.|....+|..+.+.|+.+..+
T Consensus 108 ~tg-vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR 169 (346)
T KOG4510|consen 108 FTG-VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR 169 (346)
T ss_pred hhH-HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence 333 34444999999999999999999999999999999999999999999999999998764
No 69
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.79 E-value=2.1e-06 Score=72.00 Aligned_cols=229 Identities=12% Similarity=0.140 Sum_probs=146.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhh-hhHHHHHHHHHHHhhhccccccccccchhhhhHhhh
Q 022220 7 FPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLN-LIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSI 85 (300)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~-~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~ 85 (300)
+|..+.+.+..-++.|++=..++...+.|.++.+++.+..+.. ++-+-+.+++.+.++|-.+.. .-.....++++.+
T Consensus 51 ~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~--~~IlG~iAliliv 128 (288)
T COG4975 51 SPELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT--QIILGFIALILIV 128 (288)
T ss_pred cCccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch--hHHHHHHHHHHHH
Confidence 3455555555555555555899999999999999999999966 788899999999999988876 1111234555556
Q ss_pred hhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHH
Q 022220 86 AGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILA 165 (300)
Q Consensus 86 ~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (300)
.|+.+-+. +++ .|.+.++.++.-.|....+.+.+.|..|.++.+...-+.-+...-...-+.++++.
T Consensus 129 iG~~lTs~-~~~-----------~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali- 195 (288)
T COG4975 129 IGIYLTSK-QDR-----------NNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALI- 195 (288)
T ss_pred HhheEeee-ecc-----------ccccccChHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHH-
Confidence 66665532 111 11112345566789999999999999998775544322212222233323333222
Q ss_pred HHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhh
Q 022220 166 AMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSL 245 (300)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~ 245 (300)
+.. ... +....+..+.-+.-|++-. .+...+..+-++.+..+.=.+..+..+.+.+-+.++++|+=|..++
T Consensus 196 --~~~-~~~-----~~~~~K~t~~nii~G~~Wa-~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm 266 (288)
T COG4975 196 --LGF-FKM-----EKRFNKYTWLNIIPGLIWA-IGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM 266 (288)
T ss_pred --Hhh-ccc-----ccchHHHHHHHHhhHHHHH-hhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh
Confidence 122 111 1112233344445555443 4455555788888888887888888999999999999999888775
Q ss_pred ----hhhHHHHHHHHHHh
Q 022220 246 ----VGAVIIVIGFYVVM 259 (300)
Q Consensus 246 ----~G~~li~~g~~l~~ 259 (300)
+|..+++.|..+.-
T Consensus 267 ~~v~iGiilivvgai~lg 284 (288)
T COG4975 267 VYVIIGIILIVVGAILLG 284 (288)
T ss_pred hhhhhhHHHHHHHhhhhh
Confidence 57888888766543
No 70
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.79 E-value=8.6e-05 Score=66.02 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=88.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCh-hHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHH
Q 022220 117 SNWILGGFYLAAQAILISAWYILQAITLKEFPA-LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAV 195 (300)
Q Consensus 117 ~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ 195 (300)
.++..|..+++.++++.+...+++|+...|.+. ..... .+....+. ++ ..+.|+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~------------------~~~~~~l~--~~-----~W~~G~ 57 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG------------------SGGRSYLR--RP-----LWWIGL 57 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc------------------chhhHHHh--hH-----HHHHHH
Confidence 567889999999999999999999988777541 00000 00000000 11 122333
Q ss_pred HHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 196 IGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 196 ~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
+...++..+...++...+++.++++..+..+++.+++..++||+++...+.|+++++.|..+...
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 34456667777899999999999999999999999999999999999999999999999887654
No 71
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.66 E-value=0.00076 Score=52.90 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHH
Q 022220 123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT 202 (300)
Q Consensus 123 ~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 202 (300)
.++++.+..+-++...++.++.++..++....+..+..+.+......++..+. .+.......|+..+ .|++ .....
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHHH
Confidence 56788889999999999999988876799999999999999988887766543 22211222333333 4554 45556
Q ss_pred HHHHHHHhccCceeeecchhh-HHHHHHHHHHH----HhcCCcchhhhhhhHHHHHHHHH
Q 022220 203 TLLLWCLMRAGPLYVSMFKPL-AILFSTVMGVI----IFGDGLFLGSLVGAVIIVIGFYV 257 (300)
Q Consensus 203 ~~~~~al~~~~a~~~s~~~~~-~pv~a~~l~~~----~~ge~~~~~~~~G~~li~~g~~l 257 (300)
.+..+.+++++++....+... +.+.+.+++.+ .-++++++.+++|.+++++|+.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 666688999999877665544 56677777775 34568899999999999999864
No 72
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.61 E-value=0.00086 Score=50.12 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhccCcee-eecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220 195 VIGAAFLTTLLLWCLMRAGPLY-VSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 258 (300)
Q Consensus 195 ~~~~~~~~~~~~~al~~~~a~~-~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~ 258 (300)
+++..+++.+...++|+++.+. .++...+-.+.+.+.+++++||++++.+++|.++++.|+...
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3355788889999999988855 466667888899999999999999999999999999999875
No 73
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.60 E-value=0.00034 Score=53.22 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHh-hhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220 19 FLLSLISCSSDFSSYIGLQYSSPTLNTAML-NLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT 92 (300)
Q Consensus 19 ~~~g~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~ 92 (300)
.+.-.+.+.+.+++..++++.|.+.+-.+. ...-+.+.+++++++||+++.. +++|+.+.++|+..+-
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 344444499999999999999999997664 6889999999999999999999 9999999999998884
No 74
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00025 Score=52.28 Aligned_cols=67 Identities=24% Similarity=0.399 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHhccCcee-eecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220 195 VIGAAFLTTLLLWCLMRAGPLY-VSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 195 ~~~~~~~~~~~~~al~~~~a~~-~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
+++..++|.+..+++|+++... .++....-.+.+.+.++++|||++++.+++|..+++.|+......
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 3455788999999999988754 467778889999999999999999999999999999999887654
No 75
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.52 E-value=0.00035 Score=52.23 Aligned_cols=70 Identities=13% Similarity=0.025 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 16 WKIFLLSLISCSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 16 ~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
......-.+..+++++...++++.|.+.+-.+ ....-+.+.+.+++++||+++.. +++|+.+.+.|++.+
T Consensus 36 ~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 36 IYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 33444444458899999999999999998555 55888999999999999999999 999999999999876
No 76
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.51 E-value=0.0011 Score=49.30 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhccCcee-eecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 195 VIGAAFLTTLLLWCLMRAGPLY-VSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 195 ~~~~~~~~~~~~~al~~~~a~~-~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
+++.++++.+...++|+++.+. .++...+-.+.+.+.+++++||++++.+++|..+++.|+.....
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 4456788899999999988855 46667788899999999999999999999999999999988643
No 77
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00037 Score=51.40 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHH-HHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 19 FLLSLISCSSDFSSYIGLQYSSPTLNT-AMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 19 ~~~g~~~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
.+.-++..++++++-.++++.|.+.+- +-...-.+-+++.+++++||+++.. +++++.+.++|++.+
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L 101 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence 333444489999999999999999984 4466888999999999999999999 999999999999887
No 78
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.43 E-value=0.00042 Score=59.84 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhccccc
Q 022220 197 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 265 (300)
Q Consensus 197 ~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~~ 265 (300)
.-.++..+.+.++++++|+...++..+..+++.++++++++.+++..||++..+.++|+.+........
T Consensus 26 lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 26 LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 456777888899999999999999999999999999999999999999999999999999987755443
No 79
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.43 E-value=0.00058 Score=50.76 Aligned_cols=67 Identities=12% Similarity=-0.039 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 19 FLLSLISCSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 19 ~~~g~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
...-.+...+++++..+++..|.+.+-.+ ....-+.+.+.+++++||+++.. +++++.+.++|++.+
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l 100 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence 34444449999999999999999998555 55888999999999999999999 999999999999887
No 80
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.42 E-value=0.00053 Score=51.45 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220 23 LISCSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT 92 (300)
Q Consensus 23 ~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~ 92 (300)
.+..++.+++..+++..|.+.+-.+ ....-+.+.+++++++||+++.. +++|+.+.++|+..+-
T Consensus 38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3338899999999999999999666 55888999999999999999999 9999999999999883
No 81
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.41 E-value=0.0026 Score=55.20 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecch-hhHHHHHHHHHHHHhcCCcchhhhh----hhHHHHHHHHHHh
Q 022220 185 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGLFLGSLV----GAVIIVIGFYVVM 259 (300)
Q Consensus 185 ~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~-~~~pv~a~~l~~~~~ge~~~~~~~~----G~~li~~g~~l~~ 259 (300)
..++.-+..|++- .+++..++.+.++.+.++..++. .++-+.+.++++++|||..+..+++ +.+++++|+++..
T Consensus 43 ~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 43 TSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4555556666654 57888888999999999999988 5677789999999999988766654 6777788998887
Q ss_pred hccccccc
Q 022220 260 WGKAKEEN 267 (300)
Q Consensus 260 ~~~~~~~~ 267 (300)
++++++++
T Consensus 122 ~~~~~~~~ 129 (269)
T PF06800_consen 122 YQDKKSDK 129 (269)
T ss_pred cccccccc
Confidence 76555443
No 82
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.38 E-value=0.0012 Score=48.12 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHH
Q 022220 195 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII 251 (300)
Q Consensus 195 ~~~~~~~~~~~~~al~~~~a~~~-s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li 251 (300)
+.+.++++.++.+++|+++.+.+ .+...+..+.+.+.+++++||++|+.+++|..+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34667888999999999999888 4456689999999999999999999999999876
No 83
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.33 E-value=0.0027 Score=57.27 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=89.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHH--HHHHHHH-HHHHHHHhhcc-cccceecchhhHHHHHHH
Q 022220 118 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQ--YFFSTIL-AAMFSLTVVTE-LSAWKLRLDVGLFAIAYS 193 (300)
Q Consensus 118 ~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~ 193 (300)
+...|+++++++++||+.+.+-.|+ .|+.+ .+.. |- .+++.++ ....+.+..+. .......+...+..-+..
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 4578999999999999999999887 55543 1111 11 1111111 11112211111 111111234445555555
Q ss_pred HHHHHHHHHHHHHHHHhccCceeeecch-hhHHHHHHHHHHHHhcCCc---c----hhhhhhhHHHHHHHHHHhhccc
Q 022220 194 AVIGAAFLTTLLLWCLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGL---F----LGSLVGAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 194 g~~~~~~~~~~~~~al~~~~a~~~s~~~-~~~pv~a~~l~~~~~ge~~---~----~~~~~G~~li~~g~~l~~~~~~ 263 (300)
|++- .++...+..++++.+.+....+. -++-+.+.+++.+++||-. + ...++|.+++++|+.+..+...
T Consensus 80 G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 80 GALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6644 57788888999999998876654 5678899999999999754 2 2355788999999999887433
No 84
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.0035 Score=49.35 Aligned_cols=139 Identities=9% Similarity=0.105 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHH
Q 022220 120 ILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 199 (300)
Q Consensus 120 ~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~ 199 (300)
.+..++.+.+.++-....-+..++.+...+|....+..+..+++.+..+.++.+. ...+.......|| ....|++ ..
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pwW-~~~GG~l-Ga 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPWW-AWIGGLL-GA 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCchH-HHHccch-hh
Confidence 3457788888999999999999998888779999999999999988888776433 2223211222233 3333443 33
Q ss_pred HHHHHHHHHHhccCcee-eecchhhHHHHHHHHHHHHhc----CCcchhhhhhhHHHHHHHHHHhhc
Q 022220 200 FLTTLLLWCLMRAGPLY-VSMFKPLAILFSTVMGVIIFG----DGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 200 ~~~~~~~~al~~~~a~~-~s~~~~~~pv~a~~l~~~~~g----e~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
+-.+.......+.+++. ...+..-+.+.+.+++-+=+. .+++...++|.+++++|+++.+++
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 44444446667777654 445555667778888776554 578999999999999996665443
No 85
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.24 E-value=0.0011 Score=52.63 Aligned_cols=73 Identities=18% Similarity=0.389 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220 12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV 90 (300)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l 90 (300)
.+.+..+...|++....+.+.+..++++++-..++......+.+.++++++++|+++.. ++.|++++++|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 34566777778888999999999999999999999999999999999999999999999 99999999999864
No 86
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.00 E-value=0.0038 Score=53.88 Aligned_cols=127 Identities=9% Similarity=0.095 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcc-cccceecch-----hhHHHHHHHHH
Q 022220 122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTE-LSAWKLRLD-----VGLFAIAYSAV 195 (300)
Q Consensus 122 G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~ll~~g~ 195 (300)
|.+.++.|+++++...+=.|+.-.. |.+....++.....+..+...+..+.+ ...|....+ .....+-..-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~ 78 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKT 78 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence 5677888889998887765554322 577777777776666666666544321 111110000 00111111112
Q ss_pred HHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHH-HhcCC-----cchhhhhhhHHHHHHHHHHhhccccc
Q 022220 196 IGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVI-IFGDG-----LFLGSLVGAVIIVIGFYVVMWGKAKE 265 (300)
Q Consensus 196 ~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~-~~ge~-----~~~~~~~G~~li~~g~~l~~~~~~~~ 265 (300)
++.++++.+| ...+.+.+...+.+ +||++ -....++|.+++++|..++..-|.++
T Consensus 79 iGLglg~liW---------------~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 79 IGLGLGMLIW---------------GSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhhHHHHHHH---------------HHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 2334445554 34455666666644 55543 25677899999999988887765554
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.79 E-value=0.0043 Score=45.10 Aligned_cols=54 Identities=19% Similarity=0.037 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHh
Q 022220 24 ISCSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIV 83 (300)
Q Consensus 24 ~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l 83 (300)
+++.+..++..++++.|.+.+-.+ ..+..+.+.+.+.+++||+++.. ++.|+.+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 448899999999999999999555 56899999999999999999999 9988765
No 88
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.078 Score=47.45 Aligned_cols=138 Identities=12% Similarity=0.054 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC---hhHHHHHHHHHHHHHHHHHHHHHhhcc-cccc----e---ecchhhHHHHH
Q 022220 123 GFYLAAQAILISAWYILQAITLKEFP---ALIVMLCYQYFFSTILAAMFSLTVVTE-LSAW----K---LRLDVGLFAIA 191 (300)
Q Consensus 123 ~~~~l~aa~~~a~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~---~~~~~~~~~ll 191 (300)
.+.++...+.++......+...++.+ .+.+..+..-++-.++.....+..+.. ...+ + ...+.+.+-+.
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 44445555566666666555555441 355666666666666655555544311 0111 0 11111222222
Q ss_pred HHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220 192 YSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 192 ~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
.= .+...+...+++.++.+.+|++..+...+..+.+.++.+++++++++..||...++...|+.+.+..
T Consensus 97 vP-a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 97 VP-ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HH-HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 11 2234566668889999999999999999999999999999999999999999999999999999843
No 89
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.59 E-value=0.21 Score=44.63 Aligned_cols=241 Identities=15% Similarity=0.169 Sum_probs=138.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH-HhhhhHHHHHHHHHHHhhhccc-cccccccchhhhhHhhhhhh
Q 022220 11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTA-MLNLIPAFTFILAIIFRMEKLK-WRSKSSQAKSLGTIVSIAGA 88 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~-i~~~~pi~~~ila~~~~~e~~~-~~~~~~~~~~~~~~l~~~Gv 88 (300)
+...+....+.|++=.++...|-.+++|+..+...- ...+..++-.++-.++.++--. ..+...+..++|+.++++|+
T Consensus 69 ~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGI 148 (344)
T PF06379_consen 69 PASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGI 148 (344)
T ss_pred ChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHH
Confidence 445667777888888899999999999998887744 4556777777776666442100 11112344899999999999
Q ss_pred hhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh------h-cChhH----HHHHHH
Q 022220 89 FVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK------E-FPALI----VMLCYQ 157 (300)
Q Consensus 89 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~------~-~~~~~----~~~~~~ 157 (300)
.++.......+. +.. ...++.+.-.|.+.++.+.+.-|..++-...-.. . ..++. ......
T Consensus 149 ai~g~AG~~Ke~-------~~~-~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv 220 (344)
T PF06379_consen 149 AICGKAGSMKEK-------ELG-EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVV 220 (344)
T ss_pred HHHhHHHHhhhh-------hhc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhh
Confidence 998542111111 000 1123556778999999998888877665322111 0 00111 122233
Q ss_pred HHHHHHHHHHHHHHhhcccccc---ee------cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCce----eeecchhhH
Q 022220 158 YFFSTILAAMFSLTVVTELSAW---KL------RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPL----YVSMFKPLA 224 (300)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~----~~s~~~~~~ 224 (300)
+.-+.+.-+.+.+........+ .. .....+..-+..|++- ..++++|.++-.++++. --.+.+.+.
T Consensus 221 ~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lW-y~qfffYg~G~s~lg~~~~~~sW~i~ma~~ 299 (344)
T PF06379_consen 221 LWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLW-YSQFFFYGMGESKLGASGPFSSWAIHMALI 299 (344)
T ss_pred hhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 3444444445544332111111 10 0112333333334432 35566666776777643 345667778
Q ss_pred HHHHHHHHHHHhcC------CcchhhhhhhHHHHHHHHHHhhc
Q 022220 225 ILFSTVMGVIIFGD------GLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 225 pv~a~~l~~~~~ge------~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
.+++-+++.+ ++| ++-..-++|++++++++.++-++
T Consensus 300 vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 300 VLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred HHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888887 666 23344567888888888776543
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.42 E-value=0.012 Score=44.23 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHH
Q 022220 128 AQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW 207 (300)
Q Consensus 128 ~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~ 207 (300)
+-+++|+..+-+.||..+..++..... +..-.... .+ ..| .+. ..+.....+...|++
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~--~~~~~~~~----Ll------~n~------~y~----ipf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASL--QLLQEIKF----LL------LNP------KYI----IPFLLNQSGSVLFFL 60 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchH--HHHHHHHH----HH------HhH------HHH----HHHHHHHHHHHHHHH
Confidence 346788999889898888764222111 21111111 11 011 111 122233456677779
Q ss_pred HHhccCceeeecch-hhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220 208 CLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 258 (300)
Q Consensus 208 al~~~~a~~~s~~~-~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~ 258 (300)
.+.+.+-+.+.++. .+.-+++.+.++++.+|..++..++|+++++.|+.++
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 99999999999994 9999999999998888888999999999999998764
No 91
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.31 E-value=0.013 Score=49.93 Aligned_cols=75 Identities=21% Similarity=0.166 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220 11 TTSVLWKIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF 89 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ 89 (300)
+++....-+..|++. ++.+.+--.+++..|...-+++.++.|.+.++.++++++|+++.. ||+++...+.+..
T Consensus 205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa 278 (292)
T COG5006 205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA 278 (292)
T ss_pred ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence 445556667788888 999999999999999999999999999999999999999999999 9999988877765
Q ss_pred hh
Q 022220 90 VV 91 (300)
Q Consensus 90 ll 91 (300)
=.
T Consensus 279 G~ 280 (292)
T COG5006 279 GS 280 (292)
T ss_pred cc
Confidence 33
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.26 E-value=0.0021 Score=54.33 Aligned_cols=132 Identities=12% Similarity=0.038 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHH
Q 022220 122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL 201 (300)
Q Consensus 122 G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 201 (300)
+.+.++.=++.|+.......+.-.+ |..-+..+.+.+.++.+.+.+ ...+. . +...+..-+..|++-+ .+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG~---p~qQ~lGtT~GALifaiiv~~-~~~p~--~---T~~~~iv~~isG~~Ws-~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGGK---PYQQTLGTTLGALIFAIIVFL-FVSPE--L---TLTIFIVGFISGAFWS-FG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCCC---hhHhhhhccHHHHHHHHHHhe-eecCc--c---chhhHHHHHHhhhHhh-hh
Confidence 4567788889998876664433222 333333333333333333333 22211 1 2334444455566554 67
Q ss_pred HHHHHHHHhccCceeeecchh-hHHHHHHHHHHHHhcCCcchhhhh----hhHHHHHHHHHHhhccc
Q 022220 202 TTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLFLGSLV----GAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 202 ~~~~~~al~~~~a~~~s~~~~-~~pv~a~~l~~~~~ge~~~~~~~~----G~~li~~g~~l~~~~~~ 263 (300)
+..++++++.++.+++.++.. ++-+-+.+++++.|||..++.+++ ..+++++|+++..++++
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 888889999999999998765 667888999999999999988874 55666678777665444
No 93
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.0033 Score=55.19 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=95.4
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHH
Q 022220 114 PLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYS 193 (300)
Q Consensus 114 ~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 193 (300)
....++..|.++++.+.++.+...++.|+..+|.. . ... ..+ ...+.. ......|.
T Consensus 14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~---------------ra~-~gg~~y----l~~~~Ww~ 69 (335)
T KOG2922|consen 14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGL---------------RAG-EGGYGY----LKEPLWWA 69 (335)
T ss_pred hhccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hcc---------------ccc-CCCcch----hhhHHHHH
Confidence 34567788999999999999999999888777753 1 110 000 111111 11234566
Q ss_pred HHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220 194 AVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 194 g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
|++.++++-...+.+....+++.++.+..+..+.+.+++..+++|+++....+|+++.++|..+....
T Consensus 70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 77777888888888889999999999999999999999999999999999999999999998765543
No 94
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.18 E-value=0.043 Score=41.18 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=54.5
Q ss_pred HHHH-HHHHHHHHHhccccchhhHHHHh-hhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 22 SLIS-CSSDFSSYIGLQYSSPTLNTAML-NLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 22 g~~~-~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
.+.. -.+...||..+...+.+.+..+. ++.=++|++.++++.+|..+++ .++|+.+.++|+.++
T Consensus 47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 3433 67778889999999999999996 5788999999988888888888 899999999998764
No 95
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.89 E-value=0.018 Score=51.44 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=83.6
Q ss_pred HHHHHHHHHhh--hcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022220 135 AWYILQAITLK--EFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRA 212 (300)
Q Consensus 135 ~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~ 212 (300)
..++..|+.++ ..+-|...+......+.+.....-.+...+. .+..+...+..++-+|++ ..++..+-+.++++.
T Consensus 31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~--~~~~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v 107 (316)
T KOG1441|consen 31 GVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPP--SKISSKLPLRTLLPLGLV-FCISHVLGNVSLSYV 107 (316)
T ss_pred eeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCC--CccccccchHHHHHHHHH-HHHHHHhcchhhhcc
Confidence 34556777777 4556788888877777777665555432222 222234467777777774 457777778999999
Q ss_pred CceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHH
Q 022220 213 GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGF 255 (300)
Q Consensus 213 ~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~ 255 (300)
+.+...++-.++|+++.++++++.+|+.+...+.-...++.|+
T Consensus 108 ~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV 150 (316)
T KOG1441|consen 108 PVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGV 150 (316)
T ss_pred chhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeE
Confidence 9999999999999999999999999998775544444444443
No 96
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.43 E-value=0.024 Score=50.91 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhccccc
Q 022220 199 AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 265 (300)
Q Consensus 199 ~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~~ 265 (300)
.++...++.++++.+.+..+++....-+|+..++.++.+|++|..+.++..+-+.|++++..++.++
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 4566777899999999999999999999999999999999999999999999999999988876665
No 97
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.26 E-value=0.053 Score=45.74 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220 13 SVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT 92 (300)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~ 92 (300)
..|+.+.+.+++++++++|.|.-..+-++-.-+++..+--+||.+.+.++++.+++.+ ||+|..+.+.|...-.
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence 3678888999999999999999999999888888999999999999999999999999 9999999999987663
No 98
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.10 E-value=0.047 Score=46.28 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220 18 IFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF 89 (300)
Q Consensus 18 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ 89 (300)
.+...++.+....|....+++.++...++...+.++++.+++.++++|+++.. ++.|+.+.+.|+.
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 34444556777788899999999999999999999999999999999999999 9999999988875
No 99
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.70 E-value=0.19 Score=44.08 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220 11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV 90 (300)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l 90 (300)
.++.++.+++++.++++++.+.|+-++.-++-.-+.|.-+-=++..+++.+.++.++++. |+.|+.+.+.|+.+
T Consensus 237 hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 237 HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFL 310 (327)
T ss_pred ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHH
Confidence 456788999999999999999999999988888888888999999999999999999999 99999999988865
Q ss_pred h
Q 022220 91 V 91 (300)
Q Consensus 91 l 91 (300)
=
T Consensus 311 ~ 311 (327)
T KOG1581|consen 311 E 311 (327)
T ss_pred H
Confidence 4
No 100
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.24 E-value=2.4 Score=37.63 Aligned_cols=123 Identities=14% Similarity=0.197 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhhhcC--hhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHH--HHHHHHHHHHHHHHHH
Q 022220 130 AILISAWYILQAITLKEFP--ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFA--IAYSAVIGAAFLTTLL 205 (300)
Q Consensus 130 a~~~a~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ll~~g~~~~~~~~~~~ 205 (300)
+++-..-.+..|..+..++ ..+....+|.+.+.+.....-...-...+.........|.- +++.+ ....-
T Consensus 21 ~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~------~i~t~ 94 (314)
T KOG1444|consen 21 CLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVG------MLFTG 94 (314)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHH------HHHHc
Confidence 3333344566677777775 34444558888877776655443222222221112222221 22222 12223
Q ss_pred HHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220 206 LWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 258 (300)
Q Consensus 206 ~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~ 258 (300)
..++++++.....++..++|+++++.+..++|-+++...+....++++|....
T Consensus 95 ~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 95 SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 37899999999999999999999999999999999999999999999886654
No 101
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=92.12 E-value=0.064 Score=44.01 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=56.5
Q ss_pred HHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhccc
Q 022220 201 LTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 201 ~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~ 263 (300)
+...|..++++++|+.++.+..-+-.+..+++++.+|++.....++...+.+.|+.+..+.+.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 355677999999999999999999999999999999999999999999999999888765443
No 102
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.64 E-value=1.7 Score=39.03 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=83.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHH--Hhhccc-ccceecchhhHHHHHHH
Q 022220 117 SNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSL--TVVTEL-SAWKLRLDVGLFAIAYS 193 (300)
Q Consensus 117 ~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~ll~~ 193 (300)
..-..|+++..+++++-+.+++=.||. |+.+ -...=..+.+++-+ ..|... +.-++. +.+...+...+......
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 345789999999999999998886655 4442 22222222223322 233322 221121 11112133344444555
Q ss_pred HHHHHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcCC-------cchhhhhhhHHHHHHHHHHhhcccc
Q 022220 194 AVIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDG-------LFLGSLVGAVIIVIGFYVVMWGKAK 264 (300)
Q Consensus 194 g~~~~~~~~~~~~~al~~~~a~~~-s~~~~~~pv~a~~l~~~~~ge~-------~~~~~~~G~~li~~g~~l~~~~~~~ 264 (300)
|++- +++-..|-.++++++.+.. ++..-+..++..++--++.|+. -....++|.+++++|+.+.-+....
T Consensus 80 G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 80 GVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 6644 4666777799999998654 3444555666666666654431 2335678999999999988765443
No 103
>PRK02237 hypothetical protein; Provisional
Probab=90.78 E-value=0.91 Score=33.52 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=38.2
Q ss_pred ecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcc
Q 022220 218 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 218 s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~ 262 (300)
+...-.-.+.+.++++.+-|++|+...++|.+++++|+.+..+..
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 344556678899999999999999999999999999998876543
No 104
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=89.20 E-value=0.37 Score=41.90 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220 196 IGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 196 ~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
+|-..+..+.+.++..++|+...++.....+|+-+++.-+++.+++..+|+|...+.+|+..+...
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 466677777779999999999999999999999999999999999999999999999999876543
No 105
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=88.89 E-value=3 Score=36.91 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=80.2
Q ss_pred HHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccc-eecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeee
Q 022220 140 QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAW-KLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVS 218 (300)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s 218 (300)
.++..++++=|+..+...+.+-.+...............- ...+....+--+.-..+++++-..+.++++++.+.+..+
T Consensus 35 ~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYT 114 (349)
T KOG1443|consen 35 FKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYT 114 (349)
T ss_pred hhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeee
Confidence 3445455544666666666555555544444433222211 111122222222333347788899999999999999999
Q ss_pred cchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 219 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 219 ~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
+.-...++|-.+++.++-=|++++.-..=..+|-.|+++..+
T Consensus 115 M~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~ 156 (349)
T KOG1443|consen 115 MTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTY 156 (349)
T ss_pred eccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEe
Confidence 999999999999999999999998877777777777766543
No 106
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=87.82 E-value=0.87 Score=35.61 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhh-hHHHHHHHHHH----HhhhccccccccccchhhhhHhhhhhhh
Q 022220 15 LWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNL-IPAFTFILAII----FRMEKLKWRSKSSQAKSLGTIVSIAGAF 89 (300)
Q Consensus 15 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~-~pi~~~ila~~----~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ 89 (300)
.++..+-|++++..-.+.......++++.+..+.-+ +-+...++..+ .-|++++++ +++|+++.++|+.
T Consensus 64 p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 64 PWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVI 137 (138)
T ss_pred ChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHh
Confidence 456667999999999999999999999998887665 44444444443 356888888 9999999999986
Q ss_pred h
Q 022220 90 V 90 (300)
Q Consensus 90 l 90 (300)
+
T Consensus 138 L 138 (138)
T PF04657_consen 138 L 138 (138)
T ss_pred C
Confidence 4
No 107
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=87.45 E-value=0.72 Score=33.94 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=36.7
Q ss_pred chhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcc
Q 022220 220 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 220 ~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~ 262 (300)
..-.-.+.+.++++.+-|++|+...++|..++++|+.+..+..
T Consensus 63 YGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 63 YGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred hhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 3445567899999999999999999999999999998876643
No 108
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=87.39 E-value=6 Score=38.23 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=18.3
Q ss_pred cchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220 219 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 258 (300)
Q Consensus 219 ~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~ 258 (300)
......|+-+.++|.+.-.-..+....++++.++++..+.
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 3344456666667766443333333333333333333333
No 109
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=87.36 E-value=0.18 Score=43.68 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred chhhHHHHhhhhHHHHHH-HHHHHhhhcc-ccccccccchhhhhHhhhhhhhh
Q 022220 40 SPTLNTAMLNLIPAFTFI-LAIIFRMEKL-KWRSKSSQAKSLGTIVSIAGAFV 90 (300)
Q Consensus 40 ~~~~~~~i~~~~pi~~~i-la~~~~~e~~-~~~~~~~~~~~~~~~l~~~Gv~l 90 (300)
+-+-.+++++.+.+.+.| +.++++|+|+ -.. ..+++++.+.-+.+
T Consensus 48 t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPL------GlLCiilimi~lLv 94 (381)
T PF05297_consen 48 TQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPL------GLLCIILIMIVLLV 94 (381)
T ss_dssp -----------------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcc------hHHHHHHHHHHHHH
Confidence 333344555544433333 3334455443 344 55555555544433
No 110
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=85.76 E-value=19 Score=29.92 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCcchhhhhhhHHHHH--HHHHHhh
Q 022220 229 TVMGVIIFGDGLFLGSLVGAVIIVI--GFYVVMW 260 (300)
Q Consensus 229 ~~l~~~~~ge~~~~~~~~G~~li~~--g~~l~~~ 260 (300)
-.+|..++++-.=+.+++|..|.+. |.....+
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~ 166 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLAR 166 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4457788888888888888888776 5554443
No 111
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=83.23 E-value=5.7 Score=29.24 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=46.3
Q ss_pred HHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220 201 LTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 201 ~~~~~~~al~~~~a~~~s~~-~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~ 259 (300)
+..+|+..+.+.+-+.+..+ +.+.-.++.+.|...-.|......++|..++++|+.++.
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 44566677888888777665 456788899999986666778888999999999998764
No 112
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=79.93 E-value=2 Score=37.85 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccc-----------cceecchhhHHHHHHHHH
Q 022220 127 AAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELS-----------AWKLRLDVGLFAIAYSAV 195 (300)
Q Consensus 127 l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ll~~g~ 195 (300)
+++.+||+.+...+|-..++.. ......|=+.++.++..++..+..+... +....+...+..-+..|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 4577899999998777766542 1122344444444433333322211111 111111222333333344
Q ss_pred HHHHHHHHHHHHHHhccCceeeecchh-hHHHHHHHHHHHHhcCCcc--hhhhhhhHHHHHHHHHHh
Q 022220 196 IGAAFLTTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLF--LGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 196 ~~~~~~~~~~~~al~~~~a~~~s~~~~-~~pv~a~~l~~~~~ge~~~--~~~~~G~~li~~g~~l~~ 259 (300)
..-++..+..+++...+.+..-++.. +..+.++++.++. ..+.+ ..-..|.+++++++++-.
T Consensus 81 -vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 81 -VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred -hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHH
Confidence 33455666668887777766554442 2233344444443 33333 245568888888887754
No 113
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=78.88 E-value=80 Score=32.20 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=31.9
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 41 PTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 41 ~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
.+.+.++..++|+-.+.++.+...+|.+.. .+.+.+-.++|.+.+
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~------~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDK------AFFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccch------HHHHHHHHHHHHHHh
Confidence 356788888999999999988877775444 455555555666544
No 114
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=78.47 E-value=2.7 Score=36.62 Aligned_cols=136 Identities=12% Similarity=0.108 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCh-hHHHHHHHHHHHHHHHHHHHHHhhccccccee-cchhhHHHHHHHHHHHHH
Q 022220 122 GGFYLAAQAILISAWYILQAITLKEFPA-LIVMLCYQYFFSTILAAMFSLTVVTELSAWKL-RLDVGLFAIAYSAVIGAA 199 (300)
Q Consensus 122 G~~~~l~aa~~~a~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~g~~~~~ 199 (300)
++.+.+.++++... ..+.+.+..|+ ....++.++++-+.-+++.. .+....+. .+-.++.....+ ..
T Consensus 7 ai~~vf~GCcsnvv---~lE~L~~~~pgsgNLITFaqFlFia~eGlif~----skf~~~k~kiplk~Y~i~V~m----FF 75 (330)
T KOG1583|consen 7 AISLVFGGCCSNVV---FLELLVRNEPGSGNLITFAQFLFIATEGLIFT----SKFFTVKPKIPLKDYAITVAM----FF 75 (330)
T ss_pred HHHHHHHhhhchHH---HHHHHHHhCCCCeeehHHHHHHHHHHhceeee----ccccccCCCCchhhhheehhe----ee
Confidence 33444444444432 23455555553 33555666655554443332 23222211 122333222221 13
Q ss_pred HHHHHHHHHHhc-cCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcccccccc
Q 022220 200 FLTTLLLWCLMR-AGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT 268 (300)
Q Consensus 200 ~~~~~~~~al~~-~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 268 (300)
....+.+++++. ++...--++....++.++++++++.|.+-+..|+...+++-+|+++....+.++-+.
T Consensus 76 ~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 76 IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 445667788865 666777788899999999999999999999999999999999999988766554433
No 115
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.29 E-value=1.1 Score=38.93 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=74.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcc-----cccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchh
Q 022220 148 PALIVMLCYQYFFSTILAAMFSLTVVTE-----LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKP 222 (300)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~ 222 (300)
+.|...+.++++....+...+....... .....+ +...-.-++=+.+ .........+.++++.+.+-.-+-..
T Consensus 59 d~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~l-dl~t~r~vlplsv-Vfi~mI~fnnlcL~yVgVaFYyvgRs 136 (347)
T KOG1442|consen 59 DAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQL-DLATARQVLPLSV-VFILMISFNNLCLKYVGVAFYYVGRS 136 (347)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccc-cHHHHHhhcchhh-eeeeehhccceehhhcceEEEEeccc
Confidence 3577788888877776665555432111 111111 1111111111111 12344566789999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 223 LAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 223 ~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
+..+|++++.+++++++-+..-..++++|++|..+-..
T Consensus 137 LttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvd 174 (347)
T KOG1442|consen 137 LTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVD 174 (347)
T ss_pred hhhhHHHHhHHhhcccccccccceeehhheehheeccc
Confidence 99999999999999999999999999999999877544
No 116
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=77.93 E-value=2.1 Score=31.45 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220 229 TVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 258 (300)
Q Consensus 229 ~~l~~~~~ge~~~~~~~~G~~li~~g~~l~ 258 (300)
+.++++++||++++..+.|.++++.+++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456788999999999999999999887653
No 117
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=76.63 E-value=61 Score=29.62 Aligned_cols=19 Identities=26% Similarity=-0.012 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022220 187 LFAIAYSAVIGAAFLTTLL 205 (300)
Q Consensus 187 ~~~ll~~g~~~~~~~~~~~ 205 (300)
++.+...+++..++++.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 62 LWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444
No 118
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=75.87 E-value=5.3 Score=29.28 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=37.0
Q ss_pred ecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220 218 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 218 s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
+...-.-.+.+.++.++.-|.+|+.+.++|.++.++|..+....
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 34455677889999999999999999999999999997776554
No 119
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=74.02 E-value=20 Score=33.99 Aligned_cols=25 Identities=4% Similarity=0.169 Sum_probs=20.3
Q ss_pred cchhhhhhhHHHHHHHHHHhhcccc
Q 022220 240 LFLGSLVGAVIIVIGFYVVMWGKAK 264 (300)
Q Consensus 240 ~~~~~~~G~~li~~g~~l~~~~~~~ 264 (300)
++..|++.+.++++|++++.+.+++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~ 278 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKG 278 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7889999999999999887664443
No 120
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=73.95 E-value=32 Score=29.88 Aligned_cols=126 Identities=9% Similarity=0.024 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHH-HH-HhhhccccccccccchhhhhHhhhhhhhhhhhc
Q 022220 17 KIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILA-II-FRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFY 94 (300)
Q Consensus 17 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila-~~-~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~ 94 (300)
+.++-|.+-+.++.+-.-.++....+.+.++.++.-+.+.-.. ++ +++++.... ..-.+.++|++++++|..+..+-
T Consensus 57 ~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 57 WAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred HHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeee
Confidence 3445555558889999999999999999999887665555443 22 343332221 12345788999999998877554
Q ss_pred cCCCccCC---------CCCccccccc-------cc-----ccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 022220 95 KGPPIVRP---------RLDIASLDQI-------QP-----LQSNWILGGFYLAAQAILISAWYILQAIT 143 (300)
Q Consensus 95 ~~~~~~~~---------~~~~~~~~~~-------~~-----~~~~~~~G~~~~l~aa~~~a~~~i~~~~~ 143 (300)
+.+..... .+...+.+++ +. ...+...|+.+++++.++|+...+=....
T Consensus 136 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi 205 (254)
T PF07857_consen 136 KSEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYI 205 (254)
T ss_pred cCCCCCccccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHH
Confidence 33321100 0000111010 10 11246778888888888887765544443
No 121
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.36 E-value=8.2 Score=27.99 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220 229 TVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 229 ~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~ 260 (300)
..++++.++|++.+..+.|.+++..|++...+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 45689999999999999999999999887643
No 122
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=70.35 E-value=9.6 Score=29.57 Aligned_cols=17 Identities=12% Similarity=0.606 Sum_probs=10.6
Q ss_pred hhhhhhHHHHHHHHHHh
Q 022220 243 GSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 243 ~~~~G~~li~~g~~l~~ 259 (300)
..++|..+++.|+....
T Consensus 88 ~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 88 SIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44567777777766544
No 123
>PRK02237 hypothetical protein; Provisional
Probab=69.27 E-value=25 Score=26.08 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=36.4
Q ss_pred cchhhHHHHh-hhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220 39 SSPTLNTAML-NLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT 92 (300)
Q Consensus 39 ~~~~~~~~i~-~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~ 92 (300)
...+.+-.-+ ....+...+..+..-|+|++++ +++|..++++|+.++.
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRW------DWIGAAICLVGMAVIM 104 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChh------HHHhHHHHHHhHHHhe
Confidence 3344443333 3455666688899999999999 9999999999998884
No 124
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=66.73 E-value=21 Score=26.43 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=39.0
Q ss_pred hccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220 35 GLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT 92 (300)
Q Consensus 35 al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~ 92 (300)
.++-.+.+.+-.- -....+...+..+.+-|+++.++ +++|..++++|+.++.
T Consensus 50 Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 50 TLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIIL 102 (107)
T ss_pred hcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheE
Confidence 3444444444333 33566777788899999999999 9999999999999884
No 125
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=66.59 E-value=12 Score=31.81 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhh
Q 022220 9 TVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGA 88 (300)
Q Consensus 9 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv 88 (300)
.++......++..|++.+.-.+|--+.++-++.+..++...+.-...++-+.++++|+.++. .+.++.+++...
T Consensus 218 nl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg 291 (309)
T COG5070 218 NLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSG 291 (309)
T ss_pred CCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHH
Confidence 34555667888899999888889999999999999999999999999999999999999999 999999888766
Q ss_pred hhhhh
Q 022220 89 FVVTF 93 (300)
Q Consensus 89 ~ll~~ 93 (300)
.+-+.
T Consensus 292 ~iYav 296 (309)
T COG5070 292 AIYAV 296 (309)
T ss_pred HHHHH
Confidence 65533
No 126
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=65.42 E-value=0.49 Score=40.64 Aligned_cols=139 Identities=12% Similarity=0.067 Sum_probs=91.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-ChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHH
Q 022220 116 QSNWILGGFYLAAQAILISAWYILQAITLKEF-PALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSA 194 (300)
Q Consensus 116 ~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g 194 (300)
..+.+.|..+.-.-.++-......+..+.++. +.|..-++.....-+++..+...+.... .+ .-|-+-+.++
T Consensus 13 tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~---~~----~~~~hYilla 85 (336)
T KOG2766|consen 13 TKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKY---IK----AKWRHYILLA 85 (336)
T ss_pred chhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHH---HH----HHHHHhhhee
Confidence 34455555555444444444555556666664 3466666666666666666666643211 11 1233334444
Q ss_pred HHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcc
Q 022220 195 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 195 ~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~ 262 (300)
++-. =+..+...|.++.+.+.+..+.....+.-.+++|++++-+-.+.++.|.++++.|+.++...+
T Consensus 86 ~~DV-EaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 86 FVDV-EANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred EEee-cccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 4333 333334488899999999999999999999999999999999999999999999998876543
No 127
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=63.28 E-value=5.4 Score=30.38 Aligned_cols=7 Identities=43% Similarity=0.643 Sum_probs=0.0
Q ss_pred ccccCCC
Q 022220 282 EKVPLLQ 288 (300)
Q Consensus 282 ~~~~~~~ 288 (300)
+++|+-.
T Consensus 108 ~~~p~~~ 114 (122)
T PF01102_consen 108 TDVPLSS 114 (122)
T ss_dssp -------
T ss_pred CCCCcce
Confidence 3444433
No 128
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=58.76 E-value=73 Score=27.55 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=19.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 022220 116 QSNWILGGFYLAAQAILISAWYILQAITL 144 (300)
Q Consensus 116 ~~~~~~G~~~~l~aa~~~a~~~i~~~~~~ 144 (300)
...+..|+.+++.+.+...++... |.+-
T Consensus 35 ~FyY~sg~~lGv~~s~li~~~~~~-k~lP 62 (249)
T PF10225_consen 35 LFYYSSGISLGVLASLLILLFQLS-KLLP 62 (249)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHH-HHcc
Confidence 456777888888888888777444 4443
No 129
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=58.07 E-value=39 Score=29.63 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
++.....++.++.+.++..+.-.=++.-.+..++.+...---.|.+++++++.++++.. ..-+..+.+.|+.+=
T Consensus 257 ~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln 330 (367)
T KOG1582|consen 257 VRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLN 330 (367)
T ss_pred HhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhh
Confidence 44555666666666555544444445556777777777777889999999999999998 788888888899876
Q ss_pred h
Q 022220 92 T 92 (300)
Q Consensus 92 ~ 92 (300)
.
T Consensus 331 ~ 331 (367)
T KOG1582|consen 331 M 331 (367)
T ss_pred c
Confidence 4
No 130
>PF15345 TMEM51: Transmembrane protein 51
Probab=57.62 E-value=11 Score=31.93 Aligned_cols=24 Identities=8% Similarity=0.303 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHhhccccccccc
Q 022220 246 VGAVIIVIGFYVVMWGKAKEENTI 269 (300)
Q Consensus 246 ~G~~li~~g~~l~~~~~~~~~~~~ 269 (300)
.|.+|.++++|+..+.|+|++...
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq~~ 90 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQGE 90 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 477788889999888776654443
No 131
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.36 E-value=23 Score=28.03 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhh-hHHHHHHHHHHHh----hhccccccccccchhhhhHhhhh
Q 022220 12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNL-IPAFTFILAIIFR----MEKLKWRSKSSQAKSLGTIVSIA 86 (300)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~-~pi~~~ila~~~~----~e~~~~~~~~~~~~~~~~~l~~~ 86 (300)
++..++.+.-|++++.+-+.-......+.++....+.-. +-+...++-.+=. +.+++.. +++|+.+.++
T Consensus 66 ~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~ 139 (150)
T COG3238 66 ASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLA 139 (150)
T ss_pred cCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHH
Confidence 345677788888888887777788888877776655443 4444444433211 3667777 9999999999
Q ss_pred hhhhh
Q 022220 87 GAFVV 91 (300)
Q Consensus 87 Gv~ll 91 (300)
|+.++
T Consensus 140 gil~~ 144 (150)
T COG3238 140 GILLA 144 (150)
T ss_pred HHHHh
Confidence 95554
No 132
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=55.38 E-value=76 Score=22.86 Aligned_cols=74 Identities=12% Similarity=0.202 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH---hcCC-cchhhhhhhHHHHHHHHHHhhccccc
Q 022220 190 IAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII---FGDG-LFLGSLVGAVIIVIGFYVVMWGKAKE 265 (300)
Q Consensus 190 ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~---~ge~-~~~~~~~G~~li~~g~~l~~~~~~~~ 265 (300)
+.|..++ +.+.+.+ ..++|+++-...-.+-.+..+.+++++.+. .++. +--..|.|...=+.+..+.....+|.
T Consensus 8 ~~y~t~~-~ii~~~l-Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~ 85 (93)
T PF06946_consen 8 LTYMTFL-SIITPAL-VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRS 85 (93)
T ss_pred HHHHHHH-HHHHHHH-HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhh
Confidence 3444443 2333443 488888877777777777888888887663 3332 33334778766666666765544433
No 133
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=54.15 E-value=23 Score=26.14 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=43.6
Q ss_pred HHHHHHHHhccccchhhHHHHhh-hhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 27 SSDFSSYIGLQYSSPTLNTAMLN-LIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 27 ~~~~~~~~al~~~~~~~~~~i~~-~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
-+..+||.-++..+.+.+..+.+ +.-.|+++.+..+-.|...++ .++|..+.++|+.+.
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC 123 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence 34556788888999998888766 466778888776655555566 788888888888665
No 134
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=52.69 E-value=1.4e+02 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.184 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 022220 120 ILGGFYLAAQAILISAWYILQAI 142 (300)
Q Consensus 120 ~~G~~~~l~aa~~~a~~~i~~~~ 142 (300)
+-+....+++++.++++..+-||
T Consensus 178 l~~~~~iiig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 178 LPPWVYIIIGVIAFALRFYLKKK 200 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 33677788889999888666443
No 135
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=51.92 E-value=20 Score=27.23 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=16.5
Q ss_pred HHHhcCCcchhhhh----hhHHHHHHHHHHhh
Q 022220 233 VIIFGDGLFLGSLV----GAVIIVIGFYVVMW 260 (300)
Q Consensus 233 ~~~~ge~~~~~~~~----G~~li~~g~~l~~~ 260 (300)
|+|--|.++++.+. .++.+++|+++..+
T Consensus 25 W~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgr 56 (125)
T PF15048_consen 25 WFFRVEDATPWNYSILALSFVVLVISFFLLGR 56 (125)
T ss_pred HheecCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 45557778777653 44444557666544
No 136
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=51.40 E-value=7.1 Score=30.52 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=16.2
Q ss_pred ccCceeeecchhhHHHHHHHHHHHH
Q 022220 211 RAGPLYVSMFKPLAILFSTVMGVII 235 (300)
Q Consensus 211 ~~~a~~~s~~~~~~pv~a~~l~~~~ 235 (300)
.-+....+.+.|+.|+++++++.+.
T Consensus 71 EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 71 EKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777888877776654
No 137
>PRK10666 ammonium transporter; Provisional
Probab=51.28 E-value=2.2e+02 Score=26.89 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=15.1
Q ss_pred HHHHHHHHH-HHHHHHHHHhcccc
Q 022220 17 KIFLLSLIS-CSSDFSSYIGLQYS 39 (300)
Q Consensus 17 ~~~~~g~~~-~~~~~~~~~al~~~ 39 (300)
.+...|.+. ..+++.|+.+-...
T Consensus 221 ~~~~lGt~lLw~GW~gFN~Gs~~~ 244 (428)
T PRK10666 221 PMVFTGTAILYIGWFGFNAGSAGA 244 (428)
T ss_pred HHHHHHHHHHHHHHHhccchhhcc
Confidence 345555555 88888888876543
No 138
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.99 E-value=2.5e+02 Score=30.50 Aligned_cols=18 Identities=6% Similarity=0.211 Sum_probs=11.5
Q ss_pred ccchhhhhHhhhhhhhhh
Q 022220 74 SQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 74 ~~~~~~~~~l~~~Gv~ll 91 (300)
++....++++.+++++++
T Consensus 21 rL~E~~gIlLlllAlfL~ 38 (1355)
T PRK10263 21 RLLEALLILIVLFAVWLM 38 (1355)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444667777777776555
No 139
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=48.81 E-value=52 Score=24.23 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhh
Q 022220 50 LIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTF 93 (300)
Q Consensus 50 ~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~ 93 (300)
.......+..+..-|.++.++ ++.|..+|++|+.++.+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~------D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRY------DWIGAAICLAGVAVILF 104 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHH------HhhhHHHHHhceeeeEe
Confidence 455666677788889999999 99999999999988743
No 140
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=47.75 E-value=94 Score=26.78 Aligned_cols=31 Identities=13% Similarity=-0.018 Sum_probs=24.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022220 117 SNWILGGFYLAAQAILISAWYILQAITLKEF 147 (300)
Q Consensus 117 ~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~ 147 (300)
....+|.+|+.+....+|.=....++..|..
T Consensus 124 ~~~~lG~vc~~~nI~~~~sPL~~m~~VIktk 154 (243)
T KOG1623|consen 124 RVSVLGIVCAVFNISMFAAPLSVIRKVIKTK 154 (243)
T ss_pred eeeeeehhhhhhhHHhhhccHHhhhhheecC
Confidence 3567899999999999988777777777765
No 141
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=47.52 E-value=1.6e+02 Score=24.21 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCcchhhhhhhHHHHH--HHHHHhh
Q 022220 229 TVMGVIIFGDGLFLGSLVGAVIIVI--GFYVVMW 260 (300)
Q Consensus 229 ~~l~~~~~ge~~~~~~~~G~~li~~--g~~l~~~ 260 (300)
-.+|..++.|-.-+..++|..+.+. |.....+
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~ 165 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTH 165 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4457888888888888999888777 5444433
No 142
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=45.78 E-value=25 Score=25.93 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=31.0
Q ss_pred ccchhhHHHHhh-hhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 38 YSSPTLNTAMLN-LIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 38 ~~~~~~~~~i~~-~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
..+.++--+++= ..-...+.++.+++||++++. .+.|....+.++.++
T Consensus 58 ~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~fi 106 (108)
T PF04342_consen 58 TFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWN------YLWAFLCILGAVYFI 106 (108)
T ss_pred ccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHH------HHHHHHHHHHhhhee
Confidence 345555555543 233445567788999999998 888777666555443
No 143
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=45.13 E-value=1.4e+02 Score=22.84 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=44.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccc-cccchhhhhHhhhhhhhhh
Q 022220 15 LWKIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSK-SSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 15 ~~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~-~~~~~~~~~~l~~~Gv~ll 91 (300)
....+-++.|. +++..---.++.+++-=+.-.+..+.|+|..+--..=.---++-+|| |+++..+|=.+.++++..+
T Consensus 17 vVsamgCA~CFPAlASLGAAIGLGFLsq~EGLFi~~LlPlFA~iALlanalgW~sHRQW~Rs~lG~iGP~lvl~~~~~~ 95 (139)
T PRK13755 17 VVSAMGCAACFPALASLGAAIGLGFLSQYEGLFISTLLPLFAAIALLANALGWFSHRQWLRSALGMIGPALVLAAVFLL 95 (139)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 34445556666 67777777777777777777888888988765321111111111212 2445566666666666665
No 144
>PF15102 TMEM154: TMEM154 protein family
Probab=44.98 E-value=23 Score=27.84 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHhhcccccccc
Q 022220 247 GAVIIVIGFYVVMWGKAKEENT 268 (300)
Q Consensus 247 G~~li~~g~~l~~~~~~~~~~~ 268 (300)
+.+|++..++++.+.|+|+.|.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHheeEEeecccCC
Confidence 3444555566666655544443
No 145
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=44.48 E-value=34 Score=23.53 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=5.8
Q ss_pred hhhhHHHHHHHH
Q 022220 245 LVGAVIIVIGFY 256 (300)
Q Consensus 245 ~~G~~li~~g~~ 256 (300)
++|+.++++.+.
T Consensus 9 i~Gm~iVF~~L~ 20 (79)
T PF04277_consen 9 IIGMGIVFLVLI 20 (79)
T ss_pred HHHHHHHHHHHH
Confidence 445555555433
No 146
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=42.28 E-value=2.9e+02 Score=25.80 Aligned_cols=21 Identities=19% Similarity=-0.004 Sum_probs=13.5
Q ss_pred HHHHHHHHH-HHHHHHHHHhcc
Q 022220 17 KIFLLSLIS-CSSDFSSYIGLQ 37 (300)
Q Consensus 17 ~~~~~g~~~-~~~~~~~~~al~ 37 (300)
.+..+|.+. ..++..++.+-.
T Consensus 206 ~~~~lG~~iLw~gW~gFN~gs~ 227 (404)
T TIGR03644 206 PLATLGTFILWMGWFGFNGGSQ 227 (404)
T ss_pred HHHHHHHHHHHHHHHhhcchhh
Confidence 344555555 788888877754
No 147
>PF15471 TMEM171: Transmembrane protein family 171
Probab=42.19 E-value=31 Score=29.94 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=18.1
Q ss_pred hhhhhhhHHHHHHHHHHhhcccc
Q 022220 242 LGSLVGAVIIVIGFYVVMWGKAK 264 (300)
Q Consensus 242 ~~~~~G~~li~~g~~l~~~~~~~ 264 (300)
..|++|-+++++|++.....+-|
T Consensus 161 slQImGPlIVl~GLCFFVVAHvK 183 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVK 183 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeee
Confidence 47899999999999887655433
No 148
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=41.35 E-value=3.7e+02 Score=26.66 Aligned_cols=174 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred hhhccccccccccchhhhhHhhhhhhhhhhhccCCCccCCCCCccccccccc-ccccchhHHHHHHHHHHHHHHHHHHHH
Q 022220 63 RMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQP-LQSNWILGGFYLAAQAILISAWYILQA 141 (300)
Q Consensus 63 ~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~l~aa~~~a~~~i~~~ 141 (300)
.+|++... +++|.++...|+.++.+.-.-... . .+.+...=+...+.+.++..+..+...
T Consensus 232 ~~~~l~~l------D~IG~~L~~~Gl~LfLlgl~wgG~-------------~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~ 292 (599)
T PF06609_consen 232 KREQLKEL------DWIGIFLFIAGLALFLLGLSWGGY-------------PYYPWKSAHVIAPLVIGFVLLVAFVVWEW 292 (599)
T ss_pred HHHHHHHh------hHHHHHHHHHHHHHHHHHHhccCC-------------CCCCCCCccchhhHHHHHHHHHHHHHhhh
Q ss_pred HHhhhcC----------hhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchh---hHHHHHHHHHHHHHHHHHHHHHH
Q 022220 142 ITLKEFP----------ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDV---GLFAIAYSAVIGAAFLTTLLLWC 208 (300)
Q Consensus 142 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ll~~g~~~~~~~~~~~~~a 208 (300)
+...+.| ..+.......++..........+...........+.. ....+....-+++..+-.+....
T Consensus 293 ~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l 372 (599)
T PF06609_consen 293 FGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLL 372 (599)
T ss_pred hccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHH
Q ss_pred HhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHH
Q 022220 209 LMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 257 (300)
Q Consensus 209 l~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l 257 (300)
+++.+-.+--++.. ..+.+..++..---.+.+..+.+|. .++.|+..
T Consensus 373 ~~~ir~~Kw~li~~-~~~~ta~~Gama~~~~~n~~~~i~~-~~l~g~gi 419 (599)
T PF06609_consen 373 FSKIRHIKWQLIFG-SVLMTAFCGAMAAVRPDNKNAAIAF-LVLAGFGI 419 (599)
T ss_pred HHHccchhHHHHHH-HHHHHHHHHHHHHccCCCcchHHHH-HHHHHHhH
No 149
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=40.83 E-value=2.3e+02 Score=26.73 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhh
Q 022220 54 FTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTF 93 (300)
Q Consensus 54 ~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~ 93 (300)
+...++.++.+-|... ....+.+.+|+.++.+
T Consensus 6 ~~~~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~ 37 (433)
T PRK09412 6 LIIVLLAIFLGARLGG--------IGIGFAGGLGVLILTF 37 (433)
T ss_pred HHHHHHHHHHhHhhhH--------HHHHHHHHHHHHHHHH
Confidence 3456677777877643 3333445567766654
No 150
>PRK11010 ampG muropeptide transporter; Validated
Probab=40.76 E-value=3.3e+02 Score=25.89 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=10.1
Q ss_pred hhhhhhHHHHHHHHHHhhc
Q 022220 243 GSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 243 ~~~~G~~li~~g~~l~~~~ 261 (300)
...+..++.+.|+.+....
T Consensus 384 ~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 384 FYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555566555443
No 151
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=40.61 E-value=18 Score=22.03 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=9.1
Q ss_pred cchhhhhhhHHHHHHHH
Q 022220 240 LFLGSLVGAVIIVIGFY 256 (300)
Q Consensus 240 ~~~~~~~G~~li~~g~~ 256 (300)
|++..++=.++|++|++
T Consensus 2 p~wlt~iFsvvIil~If 18 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIF 18 (49)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45555555555555553
No 152
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=39.77 E-value=86 Score=20.06 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=34.1
Q ss_pred chhhhhHhhhhhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022220 76 AKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEF 147 (300)
Q Consensus 76 ~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~ 147 (300)
...+|..+.++|++++.+. .-|.+..+++-...+.+.-..++..++.
T Consensus 4 v~v~G~~lv~~Gii~~~lP-------------------------GpG~l~i~~GL~iLa~ef~wArr~l~~~ 50 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLP-------------------------GPGLLVIFLGLAILATEFPWARRLLRRL 50 (53)
T ss_pred hhhHHHHHHHHHHHhhcCC-------------------------CCcHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3678888899999887321 1267777888888888888877776653
No 153
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.45 E-value=33 Score=24.97 Aligned_cols=32 Identities=9% Similarity=0.393 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220 54 FTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV 91 (300)
Q Consensus 54 ~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll 91 (300)
+-..++.+.+||++++. .+.+..+...|+.++
T Consensus 82 iFv~Fsvfyl~epl~~~------~l~a~~~i~gav~fi 113 (116)
T COG3169 82 IFVPFSVFYLKEPLRWN------YLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHcCcchHH------HHHHHHHHHHHHHHh
Confidence 34557888999999998 888877776666655
No 154
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=39.29 E-value=3.4e+02 Score=25.65 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=45.0
Q ss_pred hhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhccCCCccCCCCCcccccccccccccchh
Q 022220 42 TLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWIL 121 (300)
Q Consensus 42 ~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (300)
...+++.-..++.+.++-=++.|.|+++. |.+-+.++++=-.++.+. -..+...
T Consensus 298 ~KYgiLFI~LTF~~fflfE~~~~~~iHpi------QY~LVGlAl~lFYlLLLS--------------------lSEhi~F 351 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFELLSKLRIHPI------QYLLVGLALVLFYLLLLS--------------------LSEHIGF 351 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHH------HHHHHHHHHHHHHHHHHH--------------------HHhhhch
Confidence 34455555555555555556677888887 776555554444333221 1223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 022220 122 GGFYLAAQAILISAWYILQAITLKEFP 148 (300)
Q Consensus 122 G~~~~l~aa~~~a~~~i~~~~~~~~~~ 148 (300)
+..++++++.|-++-....+..+++..
T Consensus 352 ~~AYliAa~a~i~Li~~Y~~~vl~~~k 378 (430)
T PF06123_consen 352 NLAYLIAALACIGLISLYLSSVLKSWK 378 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 556666666666666555566666654
No 155
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=39.04 E-value=14 Score=26.42 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=12.9
Q ss_pred chhhhhhhHHHHHHHHHHh
Q 022220 241 FLGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 241 ~~~~~~G~~li~~g~~l~~ 259 (300)
+...++|..+.++|..+..
T Consensus 3 N~~Fl~~l~lliig~~~~v 21 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFV 21 (92)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455778888888776654
No 156
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=38.92 E-value=29 Score=29.02 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=27.8
Q ss_pred eeeecchhhHHHHHHHHHHHHhcCCcc-hhhhhhhH-HHHHHHHHHh
Q 022220 215 LYVSMFKPLAILFSTVMGVIIFGDGLF-LGSLVGAV-IIVIGFYVVM 259 (300)
Q Consensus 215 ~~~s~~~~~~pv~a~~l~~~~~ge~~~-~~~~~G~~-li~~g~~l~~ 259 (300)
...+.+..+-|..++.++..+-+-.+. ..+++|++ ++++|..+..
T Consensus 34 l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 34 LIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 444555556777777887776655444 45666554 4555887664
No 157
>PRK11469 hypothetical protein; Provisional
Probab=38.56 E-value=20 Score=29.52 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=29.6
Q ss_pred ecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHH-HHHHHh
Q 022220 218 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVI-GFYVVM 259 (300)
Q Consensus 218 s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~-g~~l~~ 259 (300)
+..+.+.|..++..+..+-+-.+....|+|+.+.+. |..+..
T Consensus 44 g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 44 GAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467788888888877766666777887765544 777665
No 158
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=38.53 E-value=29 Score=24.56 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=22.5
Q ss_pred CCcchhhhhhhHHHHHHHHHHhhcccccc
Q 022220 238 DGLFLGSLVGAVIIVIGFYVVMWGKAKEE 266 (300)
Q Consensus 238 e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 266 (300)
-..++..++|..+++.|+.++..+..+++
T Consensus 3 ~~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 3 FGFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 35688999999999999999876544443
No 159
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=37.40 E-value=51 Score=20.81 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=6.3
Q ss_pred HHHHHHHHhhccc
Q 022220 251 IVIGFYVVMWGKA 263 (300)
Q Consensus 251 i~~g~~l~~~~~~ 263 (300)
+++|+.++...|+
T Consensus 14 ~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 14 GLLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHHhhc
Confidence 3445555554443
No 160
>COG1971 Predicted membrane protein [Function unknown]
Probab=37.38 E-value=34 Score=28.18 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=29.5
Q ss_pred cchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHH-HHHHHhh
Q 022220 219 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVI-GFYVVMW 260 (300)
Q Consensus 219 ~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~-g~~l~~~ 260 (300)
..+...|+.+...+.++-+-.-.+..|+|.++... |+.+..-
T Consensus 45 ~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e 87 (190)
T COG1971 45 VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIE 87 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888887766667778776665554 8876543
No 161
>PHA03049 IMV membrane protein; Provisional
Probab=35.74 E-value=50 Score=22.05 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHHHHhhccc
Q 022220 245 LVGAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 245 ~~G~~li~~g~~l~~~~~~ 263 (300)
+++...+++|+.++-...+
T Consensus 7 l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455556667666654333
No 162
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=35.39 E-value=4.6e+02 Score=26.09 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=18.2
Q ss_pred cCCcchhhhhhhHHHHHHHHHHhhccc
Q 022220 237 GDGLFLGSLVGAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 237 ge~~~~~~~~G~~li~~g~~l~~~~~~ 263 (300)
.....+...+|..++++|+.+......
T Consensus 502 ~~~~~~~~~~~~~~~~~g~~~~~~~~~ 528 (646)
T PRK05771 502 VVGLGPLGLIGKYLIIGGVVLIILGEG 528 (646)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455667788888888877765543
No 163
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=35.18 E-value=3.7e+02 Score=24.93 Aligned_cols=25 Identities=12% Similarity=-0.057 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhccc
Q 022220 14 VLWKIFLLSLIS-CSSDFSSYIGLQY 38 (300)
Q Consensus 14 ~~~~~~~~g~~~-~~~~~~~~~al~~ 38 (300)
+-..+...|.+. ..++..++.+-..
T Consensus 188 ~s~~~~~lG~~lLw~gW~gFN~gs~~ 213 (399)
T PF00909_consen 188 HSPPLAMLGTLLLWFGWFGFNAGSAL 213 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCGS
T ss_pred CcHHHhhhhHHHHHHHhccccccccc
Confidence 335555666666 8888888855444
No 164
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=34.65 E-value=3.9e+02 Score=24.99 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=14.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHhccc
Q 022220 16 WKIFLLSLIS-CSSDFSSYIGLQY 38 (300)
Q Consensus 16 ~~~~~~g~~~-~~~~~~~~~al~~ 38 (300)
..+..+|.+. ..++..++.+-..
T Consensus 196 ~~~~~lGt~lLw~gW~gFN~Gs~~ 219 (403)
T TIGR00836 196 VPLVVLGTFILWFGWFGFNAGSAL 219 (403)
T ss_pred HHHHHHHHHHHHHHHhcccchhhc
Confidence 3444555555 8888888876654
No 165
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=33.70 E-value=2.5e+02 Score=22.59 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhhccccccccccchhhhhHh-------hhhhhhhhhhccCCCccCCCCCcccccccccccccchhHHH
Q 022220 52 PAFTFILAIIFRMEKLKWRSKSSQAKSLGTIV-------SIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGF 124 (300)
Q Consensus 52 pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l-------~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 124 (300)
..++-+...+..|..+... +.+|+.+ ++.|+.++.. +++.+......
T Consensus 82 Av~VQf~Em~v~KtsP~LY------r~LGIfLPLITTNCaVLgvaLln~--------------------~~~~~f~qsv~ 135 (193)
T COG4657 82 AVVVQFTEMVVRKTSPTLY------RLLGIFLPLITTNCAVLGVALLNI--------------------NEGHNFLQSVV 135 (193)
T ss_pred HHHHHHHHHHHHccCHHHH------HHHHHhhhhHhhchHHHHHHHHHh--------------------hhhhhHHHHHH
Confidence 3444555566667777766 6666654 4556666632 12344555666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 022220 125 YLAAQAILISAWYILQAITLKE 146 (300)
Q Consensus 125 ~~l~aa~~~a~~~i~~~~~~~~ 146 (300)
..+.+++.+++..++..-..+|
T Consensus 136 ~gf~a~lGfslvmvlfA~iRER 157 (193)
T COG4657 136 YGFGAALGFSLVMVLFAAIRER 157 (193)
T ss_pred HHhhhHhhHHHHHHHHHHHHHH
Confidence 7777777777777665555544
No 166
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=33.08 E-value=18 Score=27.55 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=10.5
Q ss_pred cCCcchhhhhhhHHHHHHHHH
Q 022220 237 GDGLFLGSLVGAVIIVIGFYV 257 (300)
Q Consensus 237 ge~~~~~~~~G~~li~~g~~l 257 (300)
+...+..++.|.++...|+.+
T Consensus 74 n~~~si~~~~G~vlLs~GLml 94 (129)
T PF15099_consen 74 NSHGSIISIFGPVLLSLGLML 94 (129)
T ss_pred cCCcchhhhehHHHHHHHHHH
Confidence 344444555555555555544
No 167
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=32.30 E-value=95 Score=24.42 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=24.9
Q ss_pred hccccchhhHHHHhhhhHHHHHHHHHHHhhhccccc
Q 022220 35 GLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWR 70 (300)
Q Consensus 35 al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~ 70 (300)
++.--+.-.++++.++.|+++.+++.++.. .+...
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~-~L~~~ 102 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQ-YLFFS 102 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Confidence 344445667899999999999999887643 44443
No 168
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=32.06 E-value=33 Score=20.52 Aligned_cols=17 Identities=35% Similarity=0.964 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHhhccc
Q 022220 247 GAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 247 G~~li~~g~~l~~~~~~ 263 (300)
|..+++++.+++.|+++
T Consensus 22 ~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHHhheEEec
Confidence 45555666666655444
No 169
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=31.44 E-value=1.6e+02 Score=23.50 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=44.7
Q ss_pred hhhhhHhhhhhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC--hhHHHH
Q 022220 77 KSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP--ALIVML 154 (300)
Q Consensus 77 ~~~~~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~--~~~~~~ 154 (300)
..++++.++.|.=++++.+--+ +......|.+|..+.+.+.+.-+......-.++++.. -..+++
T Consensus 91 ~slAVV~AIFGLElLmvSQvcE-------------d~~SrrKWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFTL~ 157 (184)
T PF15108_consen 91 GSLAVVVAIFGLELLMVSQVCE-------------DAHSRRKWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFTLM 157 (184)
T ss_pred HHHHHHHHHHhHHHHHHHHHHh-------------cchhhhhhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhHHH
Confidence 5667788888886664432111 1123578889988888776665554444445555542 345667
Q ss_pred HHHHHHHHHH
Q 022220 155 CYQYFFSTIL 164 (300)
Q Consensus 155 ~~~~~~~~~~ 164 (300)
+|--+.+..+
T Consensus 158 fWCeFtAsFL 167 (184)
T PF15108_consen 158 FWCEFTASFL 167 (184)
T ss_pred HHHHHHHHHH
Confidence 7766665544
No 170
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=31.36 E-value=4.5e+02 Score=24.73 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=5.4
Q ss_pred hhhHHHHHHHHH
Q 022220 246 VGAVIIVIGFYV 257 (300)
Q Consensus 246 ~G~~li~~g~~l 257 (300)
.|+.+++.++..
T Consensus 418 ~~~~~~i~~~~~ 429 (476)
T PLN00028 418 MGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 171
>PRK10489 enterobactin exporter EntS; Provisional
Probab=31.18 E-value=4.1e+02 Score=24.19 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=9.6
Q ss_pred hhhhhHHHHHHHHHHhhcc
Q 022220 244 SLVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 244 ~~~G~~li~~g~~l~~~~~ 262 (300)
.+.|+...++++......+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 382 SASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3445555555555554433
No 172
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=30.64 E-value=4.1e+02 Score=24.08 Aligned_cols=18 Identities=22% Similarity=0.097 Sum_probs=10.1
Q ss_pred chhhhhhhHHHHHHHHHH
Q 022220 241 FLGSLVGAVIIVIGFYVV 258 (300)
Q Consensus 241 ~~~~~~G~~li~~g~~l~ 258 (300)
+....+++++.++++.+.
T Consensus 369 ~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 369 PGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455666666665554
No 173
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=30.28 E-value=2.6e+02 Score=21.84 Aligned_cols=30 Identities=7% Similarity=-0.022 Sum_probs=23.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022220 117 SNWILGGFYLAAQAILISAWYILQAITLKE 146 (300)
Q Consensus 117 ~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~ 146 (300)
.....+.+..++++..|.-|...++|..+.
T Consensus 117 ~~~i~~l~~~li~a~IwipYf~~S~RVK~T 146 (149)
T PF10754_consen 117 AEAIRELLRSLIAAAIWIPYFLRSKRVKNT 146 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Confidence 445667888999999999998887776543
No 174
>PRK09776 putative diguanylate cyclase; Provisional
Probab=30.28 E-value=6.7e+02 Score=26.40 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHh
Q 022220 51 IPAFTFILAIIFR 63 (300)
Q Consensus 51 ~pi~~~ila~~~~ 63 (300)
+|.-...++.++.
T Consensus 28 W~~~g~~~~~ll~ 40 (1092)
T PRK09776 28 WFPTAIMMVAFYR 40 (1092)
T ss_pred cccHHHHHHHHHh
Confidence 4544445554443
No 175
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=29.98 E-value=1.9e+02 Score=25.22 Aligned_cols=45 Identities=9% Similarity=0.217 Sum_probs=28.0
Q ss_pred ecchhhHHHHHHHHHHHHhcC-----CcchhhhhhhHHHHHHHHHHhhcc
Q 022220 218 SMFKPLAILFSTVMGVIIFGD-----GLFLGSLVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 218 s~~~~~~pv~a~~l~~~~~ge-----~~~~~~~~G~~li~~g~~l~~~~~ 262 (300)
.....+..+.=.+.+.+--.+ .+|..|+++..++++|+.+..+.+
T Consensus 208 ~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 208 ALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred HHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555432111 368899999999999988765433
No 176
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=29.82 E-value=75 Score=21.33 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHHHhhcc
Q 022220 245 LVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 245 ~~G~~li~~g~~l~~~~~ 262 (300)
+++...+++|+.++-...
T Consensus 7 Li~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456666666776665433
No 177
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=29.58 E-value=75 Score=21.43 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=8.2
Q ss_pred HHHHHhhcccccccccc
Q 022220 254 GFYVVMWGKAKEENTID 270 (300)
Q Consensus 254 g~~l~~~~~~~~~~~~~ 270 (300)
+.....+.|.|+.++++
T Consensus 48 t~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 48 TYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHhHhhhhhhHhhhHh
Confidence 33334455655555543
No 178
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=29.51 E-value=5.1e+02 Score=24.79 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhh
Q 022220 133 ISAWYILQAITLKE 146 (300)
Q Consensus 133 ~a~~~i~~~~~~~~ 146 (300)
.+....+.+...++
T Consensus 347 ~a~ss~~~~Diy~~ 360 (502)
T PRK15419 347 LVCSSAITEDLYKA 360 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555544
No 179
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=28.40 E-value=24 Score=27.24 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=11.4
Q ss_pred eecchhhHHHHHHHHHHHH
Q 022220 217 VSMFKPLAILFSTVMGVII 235 (300)
Q Consensus 217 ~s~~~~~~pv~a~~l~~~~ 235 (300)
.+.+.|+-|+..++.+.++
T Consensus 70 aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 70 AAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445566677766666653
No 180
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=27.80 E-value=3.1e+02 Score=22.72 Aligned_cols=13 Identities=15% Similarity=0.010 Sum_probs=5.9
Q ss_pred HHHHHHhcCCcch
Q 022220 230 VMGVIIFGDGLFL 242 (300)
Q Consensus 230 ~l~~~~~ge~~~~ 242 (300)
+++-+.+|.+...
T Consensus 107 liDRl~~G~VvDF 119 (191)
T PRK14789 107 LVDRIRQGYVVDF 119 (191)
T ss_pred HHHHHhcCceEEe
Confidence 3344555554433
No 181
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=27.67 E-value=1.3e+02 Score=22.36 Aligned_cols=21 Identities=5% Similarity=0.379 Sum_probs=10.7
Q ss_pred hhhhhHHHHH-HHHHHhhcccc
Q 022220 244 SLVGAVIIVI-GFYVVMWGKAK 264 (300)
Q Consensus 244 ~~~G~~li~~-g~~l~~~~~~~ 264 (300)
.++|.+|++. +.-+..|+.++
T Consensus 5 ~il~llLll~l~asl~~wr~~~ 26 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQ 26 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555444 55555565443
No 182
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=27.14 E-value=21 Score=31.13 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhhcc
Q 022220 244 SLVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 244 ~~~G~~li~~g~~l~~~~~ 262 (300)
.+|...+.+.|+..|.|++
T Consensus 234 SiILVLLaVGGLLfYr~rr 252 (285)
T PF05337_consen 234 SIILVLLAVGGLLFYRRRR 252 (285)
T ss_dssp -------------------
T ss_pred chhhhhhhccceeeecccc
Confidence 3444555555665555543
No 183
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=26.51 E-value=5.4e+02 Score=24.11 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=10.5
Q ss_pred hhhhhHhhhhhhhhh
Q 022220 77 KSLGTIVSIAGAFVV 91 (300)
Q Consensus 77 ~~~~~~l~~~Gv~ll 91 (300)
..+-.+..+.|+..+
T Consensus 17 ~~v~~i~~llGiG~L 31 (406)
T KOG1479|consen 17 NLVYLIFLLLGIGTL 31 (406)
T ss_pred ccHHHHHHHHhcccc
Confidence 566667777787766
No 184
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.41 E-value=2e+02 Score=21.40 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcC-CcchhhhhhhHHHHHHHHHHhh
Q 022220 225 ILFSTVMGVIIFGD-GLFLGSLVGAVIIVIGFYVVMW 260 (300)
Q Consensus 225 pv~a~~l~~~~~ge-~~~~~~~~G~~li~~g~~l~~~ 260 (300)
.++.+.++|+.=+- .-+|+.+|.+.++=.|..+.+.
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 44555666654332 2355666666555554444433
No 185
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=25.85 E-value=4.9e+02 Score=24.90 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 022220 185 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGP 214 (300)
Q Consensus 185 ~~~~~ll~~g~~~~~~~~~~~~~al~~~~a 214 (300)
..|++++.+|++-..+.|..+.+.+++.+.
T Consensus 348 ~~~~~~~~iG~~~~~iyy~~F~~~I~k~~l 377 (476)
T TIGR01998 348 NQPLMLLVQGLVFFALYYVVFRFAIRRFNL 377 (476)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467788888998899999999999998765
No 186
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=25.53 E-value=4.3e+02 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=13.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 022220 148 PALIVMLCYQYFFSTILAAMFSL 170 (300)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~ 170 (300)
++++....+...+++++...-..
T Consensus 64 ~~~lRi~v~IlvIA~~V~~v~~~ 86 (231)
T PRK12405 64 PKEIRIPIFVMIIASFVTVVQLL 86 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666665544443
No 187
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=25.50 E-value=4.4e+02 Score=22.70 Aligned_cols=17 Identities=0% Similarity=-0.072 Sum_probs=10.5
Q ss_pred ecchhhHHHHHHHHHHH
Q 022220 181 LRLDVGLFAIAYSAVIG 197 (300)
Q Consensus 181 ~~~~~~~~~ll~~g~~~ 197 (300)
..+-+.|..+..+.+..
T Consensus 122 fySLHSWlGl~~v~ly~ 138 (245)
T KOG1619|consen 122 FYSLHSWLGLCVVILYS 138 (245)
T ss_pred eeeHHHHHHHHHHHHHH
Confidence 34566777777665543
No 188
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=25.34 E-value=5.4e+02 Score=25.02 Aligned_cols=28 Identities=4% Similarity=-0.031 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCce
Q 022220 188 FAIAYSAVIGAAFLTTLLLWCLMRAGPL 215 (300)
Q Consensus 188 ~~ll~~g~~~~~~~~~~~~~al~~~~a~ 215 (300)
++++.+|++...+.|+.+.+.+++.+--
T Consensus 385 ~~~i~iGi~~~~iYy~vF~f~I~kfnlk 412 (524)
T TIGR02005 385 VTQIIIGLCFTAIYFLVFRFLILKFNIP 412 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3447888888999999999999987763
No 189
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=24.95 E-value=3.2e+02 Score=26.58 Aligned_cols=32 Identities=9% Similarity=0.083 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCcee
Q 022220 185 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLY 216 (300)
Q Consensus 185 ~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~ 216 (300)
..|++++..|++...+.|..+.+.+++.+.-+
T Consensus 395 ~~~~~~~~~g~~~~~iyy~vF~f~I~kfnlkT 426 (530)
T PRK10110 395 TKWYMVPVVAAIWFVVYYVIFRFAITRFNLKT 426 (530)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45677888889889999999999999877654
No 190
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=24.92 E-value=4.6e+02 Score=22.75 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=17.8
Q ss_pred HHHHHHHHhccCceeeecchhhHH---HHHHHHHHHHh
Q 022220 202 TTLLLWCLMRAGPLYVSMFKPLAI---LFSTVMGVIIF 236 (300)
Q Consensus 202 ~~~~~~al~~~~a~~~s~~~~~~p---v~a~~l~~~~~ 236 (300)
.-+....+.+.+......+..-.. +...+++.++-
T Consensus 171 lPli~~~L~~~giv~~~~l~~~Rr~~~v~~~iiaAiiT 208 (258)
T PRK10921 171 VPVAIVLLCWMGVTTPEDLRKKRPYVLVGAFVVGMLLT 208 (258)
T ss_pred HHHHHHHHHHcCCCCHHHHHhcCcHHhHHHHHHHHHcC
Confidence 444445666666666555544332 33444455544
No 191
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=24.73 E-value=2.5e+02 Score=24.67 Aligned_cols=24 Identities=8% Similarity=0.264 Sum_probs=19.5
Q ss_pred cchhhhhhhHHHHHHHHHHhhccc
Q 022220 240 LFLGSLVGAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 240 ~~~~~~~G~~li~~g~~l~~~~~~ 263 (300)
+|..|++...++++|+++..+.++
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~~ 269 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAYK 269 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999987755433
No 192
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=24.33 E-value=6.5e+02 Score=24.24 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=9.3
Q ss_pred eecchhhHHHHHHHHHHHHhc
Q 022220 217 VSMFKPLAILFSTVMGVIIFG 237 (300)
Q Consensus 217 ~s~~~~~~pv~a~~l~~~~~g 237 (300)
++..+...-...++.+-++.+
T Consensus 406 ~~~~i~~~~s~~~~~~~~~~~ 426 (495)
T KOG2533|consen 406 VSAIIDGTGSAGAISGQLFRS 426 (495)
T ss_pred HhhhhcchhHHHHhhhhhccc
Confidence 334444444444444444443
No 193
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=24.22 E-value=1e+02 Score=17.10 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=6.3
Q ss_pred chhhhhhhHHHHH
Q 022220 241 FLGSLVGAVIIVI 253 (300)
Q Consensus 241 ~~~~~~G~~li~~ 253 (300)
+...++|.+++..
T Consensus 11 ~~~~~~G~~l~~~ 23 (34)
T TIGR01167 11 SLLLLLGLLLLGL 23 (34)
T ss_pred HHHHHHHHHHHHH
Confidence 3445566633333
No 194
>PRK15049 L-asparagine permease; Provisional
Probab=24.11 E-value=6.4e+02 Score=24.10 Aligned_cols=7 Identities=0% Similarity=0.112 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 022220 223 LAILFST 229 (300)
Q Consensus 223 ~~pv~a~ 229 (300)
..+.++.
T Consensus 424 ~~~~~~l 430 (499)
T PRK15049 424 FTSWLTL 430 (499)
T ss_pred HHHHHHH
Confidence 3333333
No 195
>PF13994 PgaD: PgaD-like protein
Probab=24.10 E-value=1.7e+02 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.506 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHHHhhcc
Q 022220 245 LVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 245 ~~G~~li~~g~~l~~~~~ 262 (300)
....++++.++.+..|.+
T Consensus 66 ~y~~i~~~~a~~Li~Wa~ 83 (138)
T PF13994_consen 66 IYLLIALVNAVILILWAK 83 (138)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444555655543
No 196
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=24.03 E-value=1.3e+02 Score=23.92 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=20.4
Q ss_pred ccccchhhHHHHhhhhHHHHHHHHHHHh
Q 022220 36 LQYSSPTLNTAMLNLIPAFTFILAIIFR 63 (300)
Q Consensus 36 l~~~~~~~~~~i~~~~pi~~~ila~~~~ 63 (300)
+..-+.-.++++.+..|++..+++..+.
T Consensus 69 i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 69 IAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556788899999999888876554
No 197
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=23.83 E-value=37 Score=27.02 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=7.7
Q ss_pred cchhhHHHHHHHHHHH
Q 022220 219 MFKPLAILFSTVMGVI 234 (300)
Q Consensus 219 ~~~~~~pv~a~~l~~~ 234 (300)
.+.|+-|+++++.+.+
T Consensus 79 ~lvYllPLl~li~ga~ 94 (154)
T PRK10862 79 LLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554433
No 198
>PRK11715 inner membrane protein; Provisional
Probab=23.58 E-value=6.4e+02 Score=23.90 Aligned_cols=80 Identities=10% Similarity=0.058 Sum_probs=38.5
Q ss_pred hHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhccCCCccCCCCCcccccccccccccchhH
Q 022220 43 LNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILG 122 (300)
Q Consensus 43 ~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 122 (300)
..+++.-..++.+.++-=++.|.|+++. |.+-+.++++=-.++.+. -..+...+
T Consensus 305 KYgiLFI~LTF~~fFlfE~~~~~~iHpi------QYlLVGlAl~lFYLLLLS--------------------lSEHigF~ 358 (436)
T PRK11715 305 KYAILFIALTFAAFFLFELLKKLRIHPV------QYLLVGLALVLFYLLLLS--------------------LSEHIGFT 358 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCceecHH------HHHHHHHHHHHHHHHHHH--------------------HHhhhchH
Confidence 3344444444444444445556777776 665555444443333221 11222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC
Q 022220 123 GFYLAAQAILISAWYILQAITLKEFP 148 (300)
Q Consensus 123 ~~~~l~aa~~~a~~~i~~~~~~~~~~ 148 (300)
..++++|+.|-.+-..-....+++..
T Consensus 359 ~AYliAa~a~v~li~~Y~~~vl~~~k 384 (436)
T PRK11715 359 LAYLIAALACVLLIGFYLSAVLRSWK 384 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 55555555555555444455555543
No 199
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.32 E-value=4.6e+02 Score=22.15 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHhhccc
Q 022220 244 SLVGAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 244 ~~~G~~li~~g~~l~~~~~~ 263 (300)
..+|..+++.|..+.....+
T Consensus 177 N~~gl~~~~fg~~V~~~~~~ 196 (214)
T cd08764 177 NFIGIVLVIFGGLVVYLVTE 196 (214)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 45788888888877654433
No 200
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=23.15 E-value=69 Score=19.00 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHH
Q 022220 225 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 257 (300)
Q Consensus 225 pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l 257 (300)
|+.+.+-|.+++=.+--...++|.-+++.|+.-
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lg 33 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLG 33 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777766655555667788888888653
No 201
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=22.70 E-value=6.4e+02 Score=23.63 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHHHHhccccc
Q 022220 8 PTVTTSVLWKIFLLSLIS-CSSDFSSYIGLQYSS 40 (300)
Q Consensus 8 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~ 40 (300)
.+.++.. ..+..+|... -.+++.++.+=....
T Consensus 190 ~~~~pHN-l~~~~lGa~lLWfGWfGFN~GSal~~ 222 (409)
T COG0004 190 VAIPPHN-LPLVVLGAALLWFGWFGFNAGSALAA 222 (409)
T ss_pred CCCCCCc-hhHHHHHHHHHHHHHccCCccchhhh
Confidence 3444434 4444555544 888888887765543
No 202
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=22.69 E-value=1.3e+02 Score=21.33 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=14.7
Q ss_pred cchhhhhhhHHHHHHHHHHhhccccccccc
Q 022220 240 LFLGSLVGAVIIVIGFYVVMWGKAKEENTI 269 (300)
Q Consensus 240 ~~~~~~~G~~li~~g~~l~~~~~~~~~~~~ 269 (300)
+++..++|+.+.++=+++.-+.++|+.+++
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 345555666555544444445444444443
No 203
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.66 E-value=1.1e+02 Score=19.68 Aligned_cols=24 Identities=8% Similarity=0.296 Sum_probs=18.7
Q ss_pred HhhhhHHHHHHHHHHHhhhccccc
Q 022220 47 MLNLIPAFTFILAIIFRMEKLKWR 70 (300)
Q Consensus 47 i~~~~pi~~~ila~~~~~e~~~~~ 70 (300)
++...-++.+++.+++.||+.+.+
T Consensus 8 ~Y~ig~~is~~iT~flskDs~~iR 31 (55)
T PF10753_consen 8 FYAIGAVISALITFFLSKDSLRIR 31 (55)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHH
Confidence 445566778888889999988887
No 204
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=22.58 E-value=1.6e+02 Score=17.18 Aligned_cols=19 Identities=16% Similarity=-0.216 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 022220 121 LGGFYLAAQAILISAWYIL 139 (300)
Q Consensus 121 ~G~~~~l~aa~~~a~~~i~ 139 (300)
+=.++-++.+.+|++|+|.
T Consensus 6 liVl~Pil~A~~Wa~fNIg 24 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIG 24 (36)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3456678899999999987
No 205
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=22.01 E-value=31 Score=23.10 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhccccch
Q 022220 12 TSVLWKIFLLSLIS--CSSDFSSYIGLQYSSP 41 (300)
Q Consensus 12 ~~~~~~~~~~g~~~--~~~~~~~~~al~~~~~ 41 (300)
.+.|.++-+.++++ .+.+.++..|+.|+++
T Consensus 25 ~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p 56 (65)
T PF08370_consen 25 ESYWYWIGVGALLGFIVLFNILFTLALTYLNP 56 (65)
T ss_pred CCcEEeehHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34667777777777 8999999999999854
No 206
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=21.61 E-value=5.6e+02 Score=23.21 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=5.7
Q ss_pred HhhhhHHHHHHHH
Q 022220 47 MLNLIPAFTFILA 59 (300)
Q Consensus 47 i~~~~pi~~~ila 59 (300)
+....|++..++.
T Consensus 3 ~~~i~~i~~ii~~ 15 (385)
T PF03547_consen 3 FSAILPIFLIILL 15 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 3344454444443
No 207
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=21.38 E-value=5.4e+02 Score=22.23 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=23.3
Q ss_pred CceeeecchhhHHHHHHHHHHHHhcCCcc-----hhhhhhhHHHHHHHHHH
Q 022220 213 GPLYVSMFKPLAILFSTVMGVIIFGDGLF-----LGSLVGAVIIVIGFYVV 258 (300)
Q Consensus 213 ~a~~~s~~~~~~pv~a~~l~~~~~ge~~~-----~~~~~G~~li~~g~~l~ 258 (300)
..++.-....---.+.....|.++|-.++ ....+|+.+-++-+.++
T Consensus 154 kSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 154 KSVEYMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILY 204 (243)
T ss_pred CceeeechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHh
Confidence 44554444443333344445555554332 23346777777766666
No 208
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=21.13 E-value=79 Score=27.62 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=27.7
Q ss_pred ecchhhHHHHHHHHHHHHhcC-----CcchhhhhhhHHHHHHHHHHhhc
Q 022220 218 SMFKPLAILFSTVMGVIIFGD-----GLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 218 s~~~~~~pv~a~~l~~~~~ge-----~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
........+.=.+.+.+--.+ .+|..|+++..+++.|+.+..+.
T Consensus 210 ~~yl~~Y~~~Rf~iE~~R~~~~~~~~~ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 210 GLYLIGYGLGRFFIEFFREPDAQLGGGLTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred HHHHHHHHHHHHhhhhhccCchhhccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455432222 25889999999999999877654
No 209
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.78 E-value=6.2e+02 Score=24.36 Aligned_cols=77 Identities=8% Similarity=-0.114 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHH------HHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhccccc
Q 022220 192 YSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILF------STVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 265 (300)
Q Consensus 192 ~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~------a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~~ 265 (300)
+...++.+.+-.-|+..-.-.+...-+..+...-.+ .+.+.+...++...+...+=.+...+-..++.++.-.|
T Consensus 377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcc
Confidence 333344444444444444444443333333333222 23334444455555533333333333333444544444
Q ss_pred ccc
Q 022220 266 ENT 268 (300)
Q Consensus 266 ~~~ 268 (300)
.|.
T Consensus 457 Tkg 459 (485)
T KOG0569|consen 457 TKG 459 (485)
T ss_pred cCC
Confidence 443
No 210
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=20.69 E-value=7.1e+02 Score=23.39 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=20.6
Q ss_pred HHHHHhcCCcchhhhhhhHHHHHHHHHHhhccc
Q 022220 231 MGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 263 (300)
Q Consensus 231 l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~ 263 (300)
..+.++.-.+ ....+|.++++.|+.++.+.++
T Consensus 401 ~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 401 AVWLIYAAGL-KYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 3567888888999988876443
No 211
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=20.67 E-value=87 Score=28.81 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhccccccccccch
Q 022220 54 FTFILAIIFRMEKLKWRSKSSQAK 77 (300)
Q Consensus 54 ~~~ila~~~~~e~~~~~~~~~~~~ 77 (300)
...++.-.++|+|.+..+++.+|.
T Consensus 13 ~ilLliG~~Lr~ki~~lqk~~IPa 36 (368)
T PF03616_consen 13 SILLLIGKFLRAKIPFLQKLFIPA 36 (368)
T ss_pred HHHHHHHHHHHHHhHHHHHccCCc
Confidence 344444556778888876554443
No 212
>COG4854 Predicted membrane protein [Function unknown]
Probab=20.59 E-value=2.1e+02 Score=21.44 Aligned_cols=52 Identities=10% Similarity=0.053 Sum_probs=33.8
Q ss_pred cchhhhhHhhhhhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022220 75 QAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKE 146 (300)
Q Consensus 75 ~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~ 146 (300)
-.|++.+..++.|.+++.+ +. +.....+..+-++.+....+|........++
T Consensus 72 TiqV~~is~Al~gavl~a~-kn-------------------P~~~~a~~al~~A~ca~ivLy~~fY~YYsrr 123 (126)
T COG4854 72 TIQVFSISAALGGAVLLAL-KN-------------------PLHTNAAFALEFAVCAVIVLYLAFYMYYSRR 123 (126)
T ss_pred eEEEEEehHHHHHHHHHHh-cC-------------------ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999998854 21 2333456666666666666776665554444
No 213
>TIGR00893 2A0114 d-galactonate transporter.
Probab=20.52 E-value=5.8e+02 Score=22.26 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=2.8
Q ss_pred HHHhhhc
Q 022220 141 AITLKEF 147 (300)
Q Consensus 141 ~~~~~~~ 147 (300)
.+..++.
T Consensus 50 g~l~d~~ 56 (399)
T TIGR00893 50 GWLLDRF 56 (399)
T ss_pred HHHHHhc
Confidence 3444443
No 214
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=20.14 E-value=34 Score=29.50 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCCc
Q 022220 278 ELSSEKVPLLQNSTEDT 294 (300)
Q Consensus 278 ~~~~~~~~~~~~~~~~~ 294 (300)
++.+++...+++.+++.
T Consensus 254 ~eedNEiSMLq~~~~e~ 270 (273)
T PF02404_consen 254 NEEDNEISMLQEKEREF 270 (273)
T ss_dssp -----------------
T ss_pred cchhhHHHHHHhhhhhh
Confidence 34455556666655543
Done!