Query 022220
Match_columns 300
No_of_seqs 132 out of 1707
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 15:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.2 4.3E-11 1.5E-15 92.4 6.3 71 192-262 34-105 (137)
2 3b5d_A Multidrug transporter E 98.7 3.4E-08 1.1E-12 73.5 7.3 70 192-261 34-104 (110)
3 3b5d_A Multidrug transporter E 98.4 7.4E-07 2.5E-11 66.1 7.7 68 20-93 34-103 (110)
4 2i68_A Protein EMRE; transmemb 98.4 4.9E-07 1.7E-11 69.6 6.0 68 20-93 34-103 (137)
5 3rko_J NADH-quinone oxidoreduc 78.5 23 0.00078 28.0 13.6 32 229-260 127-160 (184)
6 3l1l_A Arginine/agmatine antip 51.9 55 0.0019 29.0 8.5 45 221-266 387-432 (445)
7 1pw4_A Glycerol-3-phosphate tr 49.6 1.3E+02 0.0044 26.0 11.2 20 240-259 412-431 (451)
8 2l2t_A Receptor tyrosine-prote 48.6 15 0.00051 21.7 2.6 6 256-261 31-36 (44)
9 2jo1_A Phospholemman; FXYD1, N 38.4 22 0.00075 23.1 2.4 18 245-262 22-39 (72)
10 2zxe_G FXYD10, phospholemman-l 36.3 20 0.00069 23.5 2.1 20 245-264 25-44 (74)
11 3b9w_A Ammonium transporter fa 33.2 2.6E+02 0.0089 24.9 12.0 221 54-300 151-394 (407)
12 4djk_A Probable glutamate/gamm 31.8 2.8E+02 0.0095 24.8 10.1 14 247-260 451-464 (511)
13 2jwa_A Receptor tyrosine-prote 31.4 29 0.001 20.4 2.0 7 254-260 28-34 (44)
14 2jp3_A FXYD domain-containing 23.9 46 0.0016 21.4 2.1 20 245-264 23-42 (67)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.15 E-value=4.3e-11 Score=92.39 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcc
Q 022220 192 YSAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 192 ~~g~~~~~~~~~~~~~al~~~~a~~~s~~-~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~ 262 (300)
.+++++++++|.++.+++++.+++.+..+ ..+.|+++++++++++||++++.+++|+++|++|+++....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45677889999999999999999999998 899999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.71 E-value=3.4e-08 Score=73.46 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220 192 YSAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 261 (300)
Q Consensus 192 ~~g~~~~~~~~~~~~~al~~~~a~~~s~~-~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~ 261 (300)
..++++.++++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||++++.+++|.++|+.|+.+....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35566788999999999999999999888 89999999999999999999999999999999999988653
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.42 E-value=7.4e-07 Score=66.12 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=61.7
Q ss_pred HHHHHH-HHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhh
Q 022220 20 LLSLIS-CSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTF 93 (300)
Q Consensus 20 ~~g~~~-~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~ 93 (300)
..+.+. .+++.++..++++.|.+.+..+ ..+.|+++.+++++++||+++.. +++|+.+.++|+.++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 344444 9999999999999999999888 79999999999999999999999 99999999999998843
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.37 E-value=4.9e-07 Score=69.59 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=51.6
Q ss_pred HHHHHH-HHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhh
Q 022220 20 LLSLIS-CSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTF 93 (300)
Q Consensus 20 ~~g~~~-~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~ 93 (300)
..+++. ++++++++.++++.|++.+..+ .++.|+++.++++++++|+++.. +++|+.+.++|+.++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 445555 9999999999999999999888 89999999999999999999999 99999999999999864
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=78.49 E-value=23 Score=27.99 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCcchhhhhhhHHHHH--HHHHHhh
Q 022220 229 TVMGVIIFGDGLFLGSLVGAVIIVI--GFYVVMW 260 (300)
Q Consensus 229 ~~l~~~~~ge~~~~~~~~G~~li~~--g~~l~~~ 260 (300)
--+|..++++-.=+.++++..|.+. |.....+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLar 160 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR 160 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999988766 5555444
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=51.88 E-value=55 Score=28.96 Aligned_cols=45 Identities=7% Similarity=-0.017 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHH-hcCCcchhhhhhhHHHHHHHHHHhhcccccc
Q 022220 221 KPLAILFSTVMGVII-FGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE 266 (300)
Q Consensus 221 ~~~~pv~a~~l~~~~-~ge~~~~~~~~G~~li~~g~~l~~~~~~~~~ 266 (300)
...-++.+.++..+. +... ....+.|..+++.|+.++.+.+++++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 387 YLAVTTIAFLYCIWAVVGSG-AKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp THHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 334445554444333 3332 23455688888888887776554433
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=49.57 E-value=1.3e+02 Score=26.04 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=8.5
Q ss_pred cchhhhhhhHHHHHHHHHHh
Q 022220 240 LFLGSLVGAVIIVIGFYVVM 259 (300)
Q Consensus 240 ~~~~~~~G~~li~~g~~l~~ 259 (300)
.....++..++.+++..+..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=48.58 E-value=15 Score=21.67 Aligned_cols=6 Identities=17% Similarity=-0.047 Sum_probs=2.3
Q ss_pred HHHhhc
Q 022220 256 YVVMWG 261 (300)
Q Consensus 256 ~l~~~~ 261 (300)
+++.++
T Consensus 31 ~~~~RR 36 (44)
T 2l2t_A 31 AVYVRR 36 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 333333
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=38.36 E-value=22 Score=23.10 Aligned_cols=18 Identities=11% Similarity=0.630 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHHHhhcc
Q 022220 245 LVGAVIIVIGFYVVMWGK 262 (300)
Q Consensus 245 ~~G~~li~~g~~l~~~~~ 262 (300)
++++++.++|+.+....+
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 456666677777776554
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=36.35 E-value=20 Score=23.49 Aligned_cols=20 Identities=40% Similarity=0.760 Sum_probs=12.9
Q ss_pred hhhhHHHHHHHHHHhhcccc
Q 022220 245 LVGAVIIVIGFYVVMWGKAK 264 (300)
Q Consensus 245 ~~G~~li~~g~~l~~~~~~~ 264 (300)
+++.++.++|+.+...+|-|
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 45667777788887776544
No 11
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=33.23 E-value=2.6e+02 Score=24.87 Aligned_cols=221 Identities=11% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHH
Q 022220 54 FTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILI 133 (300)
Q Consensus 54 ~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~ 133 (300)
+.++...+++++|..+..... ..--...++++|..++-+ .=..+|.....+.......+--.+++..-
T Consensus 151 ~~aLa~a~~LG~R~~~~~~~~-~~~hn~~~~~lGt~lLW~-----------GWfGFN~Gl~~~~~~~~a~~NT~lAaaag 218 (407)
T 3b9w_A 151 YFGLGVSIALTTAAQRAQPIE-SDATSDRFSMLGSMVLWL-----------FWPSFATAIVPFEQMPQTIVNTLLALCGA 218 (407)
T ss_dssp HHHHHHHHHHCCHHHHTSCCC-CCHHHHHHHHHHHHHHHH-----------HHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCCc-CCCCCHHHHHHHHHHHHH-----------HHHhhhhhhccchhhHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHH-----
Q 022220 134 SAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWC----- 208 (300)
Q Consensus 134 a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a----- 208 (300)
++...+..+..++.+ +-........++.++..-... .....+.-+.+|+++..+++....+.
T Consensus 219 ~l~~~~~~~~~~~gK-~~~~~~~nG~LAGLVAITa~~------------~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~ 285 (407)
T 3b9w_A 219 TLATYFLSALFHKGK-ASIVDMANAALAGGVAIGSVC------------NIVGPVGAFVIGLLGGAISVVGFVFIQPMLE 285 (407)
T ss_dssp HHHHHHHHHHHTTTC-CCHHHHHHHTTHHHHHHTTTT------------TTSCHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CCHHHHHHhhhhhhheeccCC------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHH-----HHHHHhhccccccccccCCC--------
Q 022220 209 --LMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVI-----GFYVVMWGKAKEENTIDDRG-------- 273 (300)
Q Consensus 209 --l~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~-----g~~l~~~~~~~~~~~~~~~~-------- 273 (300)
++.-++..+-.+=.+-=+++.+.. .++....+..|++|.+.++. +..+...-+.|..++++..+
T Consensus 286 ~~l~iDD~l~a~~vHgv~Gi~G~l~~-glfa~~~~~~Ql~g~~~~~~~s~v~~~i~~~il~~r~~~e~e~~g~~~we~p~ 364 (407)
T 3b9w_A 286 SKAKTIDTCGVHNLHGLPGLLGGFSA-ILIVPGIAVAQLTGIGITLALALIGGVIAGALIKLTGTTKQAYEDSHEFIHLA 364 (407)
T ss_dssp HHSCCCCTTCHHHHTTHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCGGGTSSSCC
T ss_pred hcCCCCCCCCCeecchHHHHHHHHHH-HHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHcCCcccccCcc
Q ss_pred CCCcccccccccCCC---CCCCCccCCCCC
Q 022220 274 TWSSELSSEKVPLLQ---NSTEDTKCCPSV 300 (300)
Q Consensus 274 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 300 (300)
.+..+-.++..|... .+.|..+-..++
T Consensus 365 ld~~~hg~~ayp~~~~~~~~~~~~r~~~~~ 394 (407)
T 3b9w_A 365 GPEDEHKAERLVLEAKTEIQGLKNRIDAAV 394 (407)
T ss_dssp CGGGC-------------------------
T ss_pred ccHHHhchhhccchhhhhccccccCCChhh
No 12
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=31.78 E-value=2.8e+02 Score=24.76 Aligned_cols=14 Identities=7% Similarity=0.465 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHhh
Q 022220 247 GAVIIVIGFYVVMW 260 (300)
Q Consensus 247 G~~li~~g~~l~~~ 260 (300)
+..+++.++..+.+
T Consensus 451 ~~~~~~~~i~~~~~ 464 (511)
T 4djk_A 451 VSFLVVLALPFILY 464 (511)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 13
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=31.41 E-value=29 Score=20.39 Aligned_cols=7 Identities=14% Similarity=0.202 Sum_probs=2.5
Q ss_pred HHHHHhh
Q 022220 254 GFYVVMW 260 (300)
Q Consensus 254 g~~l~~~ 260 (300)
|+.+..+
T Consensus 28 ~l~~~~~ 34 (44)
T 2jwa_A 28 GVVFGIL 34 (44)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 3333333
No 14
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=23.94 E-value=46 Score=21.38 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHhhcccc
Q 022220 245 LVGAVIIVIGFYVVMWGKAK 264 (300)
Q Consensus 245 ~~G~~li~~g~~l~~~~~~~ 264 (300)
++++++.+.|+.+...+|-|
T Consensus 23 ifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 45666777788887765443
Done!