Query 022220
Match_columns 300
No_of_seqs 132 out of 1707
Neff 9.1
Searched_HMMs 13730
Date Mon Mar 25 15:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022220.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022220hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 63.7 25 0.0018 26.5 9.6 28 226-253 95-122 (222)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 61.8 37 0.0027 27.3 12.4 15 201-215 361-375 (447)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 42.8 75 0.0054 25.2 15.3 17 132-148 71-87 (447)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 35.0 22 0.0016 16.7 2.8 16 121-136 3-18 (27)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 13.1 63 0.0046 23.5 3.1 33 222-254 73-105 (199)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 11.7 3.5E+02 0.025 21.6 20.2 26 17-42 197-223 (383)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.6 2.5E+02 0.018 21.0 5.7 50 17-70 4-53 (248)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 5.6 1.5E+02 0.011 18.4 2.0 15 251-265 31-45 (91)
9 d2i9wa3 g.74.1.1 (A:159-183) H 4.4 1.9E+02 0.014 13.1 1.3 17 281-297 4-20 (26)
10 d2iuba2 f.17.3.1 (A:286-349) M 4.2 2.5E+02 0.018 15.8 2.2 9 253-261 52-60 (64)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=63.73 E-value=25 Score=26.49 Aligned_cols=28 Identities=11% Similarity=0.021 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCcchhhhhhhHHHHH
Q 022220 226 LFSTVMGVIIFGDGLFLGSLVGAVIIVI 253 (300)
Q Consensus 226 v~a~~l~~~~~ge~~~~~~~~G~~li~~ 253 (300)
+.+.+.+..+.+.+++....+|..+.+.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 3455567778899999988888877655
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=61.78 E-value=37 Score=27.27 Aligned_cols=15 Identities=20% Similarity=0.000 Sum_probs=6.7
Q ss_pred HHHHHHHHHhccCce
Q 022220 201 LTTLLLWCLMRAGPL 215 (300)
Q Consensus 201 ~~~~~~~al~~~~a~ 215 (300)
....+....+..+..
T Consensus 361 ~~~~~~~~~~~~p~~ 375 (447)
T d1pw4a_ 361 VMLIGLHALELAPKK 375 (447)
T ss_dssp HHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHcCHH
Confidence 334444445555443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=42.82 E-value=75 Score=25.19 Aligned_cols=17 Identities=0% Similarity=-0.244 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhhcC
Q 022220 132 LISAWYILQAITLKEFP 148 (300)
Q Consensus 132 ~~a~~~i~~~~~~~~~~ 148 (300)
.+++......++..++.
T Consensus 71 ~~~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 71 AYGFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 33444445556666664
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=34.98 E-value=22 Score=16.69 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 022220 121 LGGFYLAAQAILISAW 136 (300)
Q Consensus 121 ~G~~~~l~aa~~~a~~ 136 (300)
+|.+..-++.++||.|
T Consensus 3 lgli~~tl~glf~aay 18 (27)
T d2e74g1 3 LGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHH
Confidence 5788888899999988
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.10 E-value=63 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHH
Q 022220 222 PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIG 254 (300)
Q Consensus 222 ~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g 254 (300)
..-.+........++|.+++.....+..+.+..
T Consensus 73 i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 73 VPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp HHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 333344444456677888888887777766663
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=11.65 E-value=3.5e+02 Score=21.60 Aligned_cols=26 Identities=8% Similarity=-0.043 Sum_probs=16.8
Q ss_pred HHHHHHHHH-HHHHHHHHHhccccchh
Q 022220 17 KIFLLSLIS-CSSDFSSYIGLQYSSPT 42 (300)
Q Consensus 17 ~~~~~g~~~-~~~~~~~~~al~~~~~~ 42 (300)
.+...|.+. ..++..++-+-......
T Consensus 197 ~~~~lG~~iLw~gW~gFN~gs~~~~~~ 223 (383)
T d1u7ga_ 197 PMVFTGTAILYIGWFGFNAGSAGTANE 223 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSSSSH
T ss_pred hhhhHHHHHHHHHHHHhccccccccch
Confidence 344555555 88888888887665433
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.65 E-value=2.5e+02 Score=21.02 Aligned_cols=50 Identities=12% Similarity=-0.018 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccc
Q 022220 17 KIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWR 70 (300)
Q Consensus 17 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~ 70 (300)
++.++|++.++..++....+..-+-..+.++ -+.+.++-++++.+|.-.+
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~~vy~s~r~~p~ 53 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAITT----LILSSAGLYIFANRKAYAW 53 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHHH----HHHHHHHHHHHSSSCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHH----HHHHHheEEEEEccCccce
Confidence 4567777776666666666655555444433 3455566677777776666
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.64 E-value=1.5e+02 Score=18.41 Aligned_cols=15 Identities=20% Similarity=-0.124 Sum_probs=6.8
Q ss_pred HHHHHHHHhhccccc
Q 022220 251 IVIGFYVVMWGKAKE 265 (300)
Q Consensus 251 i~~g~~l~~~~~~~~ 265 (300)
++.|..++...|.|+
T Consensus 31 ~V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 31 PAILMAVGFAWKYRA 45 (91)
T ss_dssp HHHHHHHTTTTTTTT
T ss_pred HHHHHHHhhheeeec
Confidence 334555554444443
No 9
>d2i9wa3 g.74.1.1 (A:159-183) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=4.38 E-value=1.9e+02 Score=13.07 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=11.0
Q ss_pred cccccCCCCCCCCccCC
Q 022220 281 SEKVPLLQNSTEDTKCC 297 (300)
Q Consensus 281 ~~~~~~~~~~~~~~~~~ 297 (300)
.|++|..-.+.|+.++|
T Consensus 4 tqkqpcicgsgekfkrc 20 (26)
T d2i9wa3 4 TQKQPCICGSGEKFKRC 20 (26)
T ss_dssp CTTSBCTTSCSSBGGGT
T ss_pred cccCCeeecCchHHHhh
Confidence 46777777766665554
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.18 E-value=2.5e+02 Score=15.80 Aligned_cols=9 Identities=22% Similarity=0.349 Sum_probs=3.5
Q ss_pred HHHHHHhhc
Q 022220 253 IGFYVVMWG 261 (300)
Q Consensus 253 ~g~~l~~~~ 261 (300)
+++.++.+.
T Consensus 52 ~~~~~~~~f 60 (64)
T d2iuba2 52 IAVIMVVYF 60 (64)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHH
Confidence 333444443
Done!