BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022221
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 350 bits (898), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 195/305 (63%), Positives = 223/305 (73%), Gaps = 13/305 (4%)
Query: 1 MELGGGRKRGRHDGASNGNGGFKKSKQEMENFPTGIGSKSKPCTKFFSTSGCPFGEGCHF 60
ME+GG RKRG+ DGA NG GG K +E E+F TG+GSKSKPCTKFFSTSGCPFGEGCHF
Sbjct: 1 MEVGG-RKRGKPDGA-NGAGG--KRARESESFQTGVGSKSKPCTKFFSTSGCPFGEGCHF 56
Query: 61 LHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGC 120
LH+ PGG++AV++M NLGG PA PPP R + PDG P VK+RLCNKYN+AEGC
Sbjct: 57 LHHFPGGYQAVAKMTNLGG-PAIAPPPGRMPMGN-AVPDGPPTPTVKTRLCNKYNTAEGC 114
Query: 121 KFGDKCHFAHGEWELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQSLGAAASFGASATA 180
K+GDKCHFAHGE ELG+P + P MG G P ++ ASFGASATA
Sbjct: 115 KWGDKCHFAHGERELGKPMLMDSSMPPPMGPRPTGHFAPPPMPS-PAMSTPASFGASATA 173
Query: 181 KISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAM 240
KIS+DA LAG IIG+ GVN+KQI R+TGAKL+IRDHE D NL+NIELEGTFDQIK ASAM
Sbjct: 174 KISVDASLAGGIIGRGGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNASAM 233
Query: 241 VRELIVNVGSGSGHSMK------SNSSSQSNNFKTKLCENFAKGSCTFGDRCHFAHGSEE 294
VRELIV++G G+ K +NFKTKLCENF KGSCTFGDRCHFAHG E
Sbjct: 234 VRELIVSIGGGAPPQGKKPVGGSHRGGGPGSNFKTKLCENFTKGSCTFGDRCHFAHGENE 293
Query: 295 LRKSV 299
LRKS
Sbjct: 294 LRKSA 298
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 266 NFKTKLCENFAKGS-CTFGDRCHFAHGSEELRKSVI 300
KT+LC + C +GD+CHFAHG EL K ++
Sbjct: 99 TVKTRLCNKYNTAEGCKWGDKCHFAHGERELGKPML 134
>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa
subsp. japonica GN=Os04g0665700 PE=2 SV=1
Length = 309
Score = 310 bits (795), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 180/309 (58%), Positives = 207/309 (66%), Gaps = 22/309 (7%)
Query: 4 GGGRKRGRHDGASNGNGGFKKSKQEMENFPTGIGSKSKPCTKFFSTSGCPFGEGCHFLHY 63
G RKR R D A+ G G K+S+ E E+F TG+ SK KPCTKFFST GCPFGEGCHF H+
Sbjct: 5 GAARKRSRPDTANGGAAGGKRSR-ETESFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHF 63
Query: 64 VPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAV--KSRLCNKYNSAEGCK 121
VPGG++AV++ LNLG P A G+S PA K+R+C KYN+AEGCK
Sbjct: 64 VPGGYQAVAKTLNLGNPAVPAPARAPMDHAA----GGNSHPASSGKTRMCTKYNTAEGCK 119
Query: 122 FGDKCHFAHGEWELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQSLGAAA--SFGASAT 179
FGDKCHFAHGE ELG+P S+E AM PM GR GGR EPPP + +FGASAT
Sbjct: 120 FGDKCHFAHGERELGKPAYMSHES--AMAPPMGGRYGGRPEPPPPAAMGPPAGNFGASAT 177
Query: 180 AKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASA 239
AKIS+DA LAG IIGK GVN+KQICR+TG KLSIRDHE D NL+NIELEG FDQIKQAS
Sbjct: 178 AKISVDASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQASN 237
Query: 240 MVRELIVNVGSGS-----------GHSMKSNSSSQSNNFKTKLCENFAKGSCTFGDRCHF 288
MV ELI + + +N+KTKLCENF KG+CTFGDRCHF
Sbjct: 238 MVGELIATISPSTPAKKPAGSAAGAAPAGRGGPGGRSNYKTKLCENFVKGTCTFGDRCHF 297
Query: 289 AHGSEELRK 297
AHG E RK
Sbjct: 298 AHGENEQRK 306
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 305 bits (781), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/305 (55%), Positives = 203/305 (66%), Gaps = 23/305 (7%)
Query: 1 MELGGGRKRGRHDGASNGNGGFKKSKQEMENFPTGIGSKSKPCTKFFSTSGCPFGEGCHF 60
ME GGG++ A G G K + E+ G+GSK KPCTKFFSTSGCPFG CHF
Sbjct: 1 MEAGGGKR-----AAPEGTNGAAKRARASESSQVGVGSKLKPCTKFFSTSGCPFGSSCHF 55
Query: 61 LHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGC 120
LH PGG++A ++M + GGT PP G P P+G +VK+R+CNKYN+AEGC
Sbjct: 56 LHNFPGGYQAAAKMTSHGGTAVAAPPGRMPLG--PGAPNGPPTSSVKTRMCNKYNTAEGC 113
Query: 121 KFGDKCHFAHGEWELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQ---SLGAAASFGAS 177
K+G KCHFAHGE ELG+P + P MG E PP + ++FGAS
Sbjct: 114 KWGSKCHFAHGERELGKPMLLDNSMPHPMGS-------MPFEAPPMPGPDIVPPSTFGAS 166
Query: 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQA 237
ATAKIS+DA LAG IIGK G N+K I R+TGAKL+IRD+E +PNL+NIELEGTFDQIK A
Sbjct: 167 ATAKISVDASLAGGIIGKGGTNTKHISRMTGAKLAIRDNESNPNLKNIELEGTFDQIKHA 226
Query: 238 SAMVRELIVNVGSGSGHSMK-----SNSSSQSNNFKTKLCENFAKGSCTFGDRCHFAHGS 292
SAMV ELIV + SG+ K S++ +NFKTKLCENF KGSCTFGDRCHFAHG
Sbjct: 227 SAMVTELIVRI-SGNAPPAKNPGRGSHAGGPGSNFKTKLCENFNKGSCTFGDRCHFAHGE 285
Query: 293 EELRK 297
ELRK
Sbjct: 286 SELRK 290
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRP 138
K++LC +N C FGD+CHFAHGE EL +P
Sbjct: 261 KTKLCENFNKGS-CTFGDRCHFAHGESELRKP 291
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 264 SNNFKTKLCE--NFAKGSCTFGDRCHFAHGSEELRKSVI 300
+++ KT++C N A+G C +G +CHFAHG EL K ++
Sbjct: 96 TSSVKTRMCNKYNTAEG-CKWGSKCHFAHGERELGKPML 133
>sp|Q9C7C3|C3H36_ARATH Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis
thaliana GN=At3g12130 PE=2 SV=1
Length = 248
Score = 248 bits (632), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 151/307 (49%), Positives = 178/307 (57%), Gaps = 76/307 (24%)
Query: 7 RKRGRHD-GASNGNGG-FKKSKQEMENFPTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYV 64
RKRGR + G+ N NGG +KKSKQEME++ TG+GSKSKPCTKFFSTSGCPFGE CHFLHYV
Sbjct: 4 RKRGRPEAGSFNSNGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFLHYV 63
Query: 65 PGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGCKFGD 124
PGG+ AVSQM N+G PP P+ S N S G +F
Sbjct: 64 PGGYNAVSQMTNMG------PPIPQVSR-------------------NMQGSGNGGRFSG 98
Query: 125 KCHFAHGEWELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQSLGAAASFGASATAKISI 184
R GP H ++FG SATA+ S+
Sbjct: 99 ----------------------RGESGPGH----------------VSNFGDSATARFSV 120
Query: 185 DAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVREL 244
DA LAGAIIGK GV+SKQICR TG KLSI+DHE DPNL+NI LEGT +QI +ASAMV++L
Sbjct: 121 DASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVKDL 180
Query: 245 IVNVGSGSGHSMKSNSSSQS-----------NNFKTKLCENFAKGSCTFGDRCHFAHGSE 293
I + S + +NFKTK+CE F+KG+CTFGDRCHFAHG
Sbjct: 181 IGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFAHGEA 240
Query: 294 ELRKSVI 300
ELRKS I
Sbjct: 241 ELRKSGI 247
>sp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis
thaliana GN=At5g06770 PE=2 SV=1
Length = 240
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 132/207 (63%), Gaps = 18/207 (8%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAH---------GEWELGRPTVPSY-EDPRAMGGPMHGR 156
KS+ C K+ S GC FGD CHF H + RP V + + GGP GR
Sbjct: 38 KSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGP-GGR 96
Query: 157 MGGRLEPPPQSLGAAASFGASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDH 216
GR +P G + FGAS T+KIS+DA LAGAIIGK G++SKQICR TGAKLSI+DH
Sbjct: 97 FSGRGDP---GSGPVSIFGAS-TSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDH 152
Query: 217 EVDPNLRNIELEGTFDQIKQASAMVRELIVNVGSG---SGHSMKSNSSSQSNNFKTKLCE 273
E DPNL+ IELEGTF+QI AS MVRELI +GS G +N+KTK+C+
Sbjct: 153 ERDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKPHPGSNYKTKICD 212
Query: 274 NFAKGSCTFGDRCHFAHGSEELRKSVI 300
++KG+CT+GDRCHFAHG ELR+S I
Sbjct: 213 RYSKGNCTYGDRCHFAHGESELRRSGI 239
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 62/73 (84%), Gaps = 2/73 (2%)
Query: 7 RKRGRHDGAS--NGNGGFKKSKQEMENFPTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYV 64
RKRGR + A+ N NGGFK+SKQEME+ TG+GSKSKPCTKFFSTSGCPFG+ CHFLHYV
Sbjct: 4 RKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLHYV 63
Query: 65 PGGFKAVSQMLNL 77
PGG+ A +QM NL
Sbjct: 64 PGGYNAAAQMTNL 76
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 30/124 (24%)
Query: 36 IGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKA------VSQMLNLGGTPAHPP---- 85
I + K C KF CP+G+ C+F+H F+ S ++++G T A P
Sbjct: 182 IILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTA 241
Query: 86 --------------PPPRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHG 131
P P N+G K+RLC K++ C FGDKCHFAHG
Sbjct: 242 SNLIEVNRQGSIPVPAPMNNGG------VVKTVYWKTRLCMKFDITGQCPFGDKCHFAHG 295
Query: 132 EWEL 135
+ EL
Sbjct: 296 QAEL 299
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 84/221 (38%), Gaps = 17/221 (7%)
Query: 86 PPPRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYED 145
PPP N G F K+R+C K+ A C+ G+ C+FAHG +L +P E
Sbjct: 93 PPPVNKGTANIF--------YKTRMCAKFR-AGTCRNGELCNFAHGIEDLRQPPSNWQEI 143
Query: 146 --PRAMGGPMHGRMGGRLEPPPQSLGAAASFGASATAKISIDAKLAGAIIGKNGVNSKQI 203
P G E SL + KI + KL
Sbjct: 144 VGPPPAGQDRERERERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDR 203
Query: 204 CRLTGAKLSIRDHEVDPNLRN---IELEGTF-DQIKQASAMVRELIVNVGSGSGHSMKSN 259
C LS + E LR I + T DQ ++ + E+ M +
Sbjct: 204 CNFIHEDLS-KFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNG 262
Query: 260 SSSQSNNFKTKLCENF-AKGSCTFGDRCHFAHGSEELRKSV 299
++ +KT+LC F G C FGD+CHFAHG EL SV
Sbjct: 263 GVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSV 303
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 36 IGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPP 95
I K++ C KF + + C GE C+F H + + S + G PPP ++
Sbjct: 103 IFYKTRMCAKFRAGT-CRNGELCNFAHGIEDLRQPPSNWQEIVG----PPPAGQDRERER 157
Query: 96 SFPDGSSPPAV----------------KSRLCNKYNSAEGCKFGDKCHFAHGE 132
P++ + +LC K+ E C +GD+C+F H +
Sbjct: 158 ERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHED 210
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLHYVPGGFK---AVS---QMLNLGGTPAHPPPPPRNSG 92
K + C KF++ GCP+G+ C FLH + A+S + GG ++ +
Sbjct: 171 KGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGGGGSYNSAAAAAAS 230
Query: 93 APPSFPDG--SSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGR 137
A + +G P K+R+CNK+ C FG KCHFAHG EL +
Sbjct: 231 ASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHK 277
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 267 FKTKLCENFAKGSCTFGDRCHFAHGSEELRK 297
FKTKLC F G+C + C+FAHG EELRK
Sbjct: 88 FKTKLCCKFRAGTCPYVTNCNFAHGMEELRK 118
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 265 NNFKTKLCENF-AKGSCTFGDRCHFAHGSEELRK 297
+N+KT++C + G C FG +CHFAHG+ EL K
Sbjct: 244 SNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHK 277
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 105 AVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV 140
A K R C K+ + EGC +GD C F H E R +V
Sbjct: 169 AYKGRHCKKFYTDEGCPYGDACTFLHDEQSKARESV 204
>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis
thaliana GN=At2g35430 PE=2 SV=1
Length = 252
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 39 KSKPCTKFFSTSGCPF-GEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSF 97
K+K C KF + + CP+ CHF H N T R S A
Sbjct: 73 KTKLCFKFRAGT-CPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRN-RESFAVSLG 130
Query: 98 PDGS-----SPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
P G+ P K+R+CNK+ + C FG CHFAHG EL
Sbjct: 131 PRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 267 FKTKLCENFAKGSCTF-GDRCHFAHGSEELR 296
FKTKLC F G+C + CHFAH +EELR
Sbjct: 72 FKTKLCFKFRAGTCPYSASSCHFAHSAEELR 102
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 263 QSNNFKTKLCENF-AKGSCTFGDRCHFAHGSEEL 295
+S N+KT++C + G C FG CHFAHG EL
Sbjct: 140 KSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 268 KTKLCENFAKGSCTFGDRCHFAHGSEELRKSV 299
KT+LC + +G+C +G RC FAHG +ELR +
Sbjct: 384 KTELCNKWERGACPYGARCRFAHGLQELRPVI 415
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 105 AVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV--PSYE 144
A K+ LCNK+ C +G +C FAHG EL RP + P Y+
Sbjct: 382 AAKTELCNKWERG-ACPYGARCRFAHGLQEL-RPVIRHPRYK 421
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLH 62
K+ PC F + SGCP+G CHF H
Sbjct: 421 KTLPCQMFAAASGCPYGHRCHFRH 444
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 32/103 (31%)
Query: 28 EMENFPTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPP 87
E+E + G +K++ C K+ CP+G C F H G + + ++ HP
Sbjct: 374 EVEAYRQG-AAKTELCNKW-ERGACPYGARCRFAH----GLQELRPVIR------HP--- 418
Query: 88 PRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAH 130
K+ C + +A GC +G +CHF H
Sbjct: 419 -----------------RYKTLPCQMFAAASGCPYGHRCHFRH 444
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 266 NFKTKLCENFAKGS-CTFGDRCHFAH 290
+KT C+ FA S C +G RCHF H
Sbjct: 419 RYKTLPCQMFAAASGCPYGHRCHFRH 444
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 267 FKTKLCENFA-KGSCTFGDRCHFAHGSEELR 296
+KT+LCE+F KG C +G++C FAHG EL+
Sbjct: 205 YKTELCESFTIKGYCKYGNKCQFAHGLNELK 235
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 263 QSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEE 294
+SNN++TK C N++K G C +G RC F HG ++
Sbjct: 239 KSNNYRTKPCINWSKLGYCPYGKRCCFKHGDDK 271
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 93 APPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
AP P + K+ LC + CK+G+KC FAHG EL
Sbjct: 192 APLQLPQLVNKTLYKTELCESFTIKGYCKYGNKCQFAHGLNEL 234
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 103 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGR 137
P K+R+CNK+ C FG KCHFAHG EL R
Sbjct: 258 PSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHR 292
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRP------TVPSYEDPRA--MGGPMHGRMG 158
K++LC K+ A C + C+FAH EL RP V ++E+ R+ MG P
Sbjct: 93 KTKLCCKFR-AGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPT----V 147
Query: 159 GRLEPPPQSLGAAASFGASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEV 218
+E P + + ++A + S + + G + C + S V
Sbjct: 148 SVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESV 207
Query: 219 -----DPNLRNIELEGTFDQIKQASAMVRELIVNVGSGSGHSMKSNSSSQSNNFKTKLCE 273
+ G+ ++V G G S + +N+KT++C
Sbjct: 208 AISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICN 267
Query: 274 NF-AKGSCTFGDRCHFAHGSEELRK 297
+ G C FG +CHFAHG+ EL +
Sbjct: 268 KWEITGYCPFGAKCHFAHGAAELHR 292
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 267 FKTKLCENFAKGSCTFGDRCHFAHGSEELRK 297
FKTKLC F G+C + C+FAH EELR+
Sbjct: 92 FKTKLCCKFRAGTCPYITNCNFAHTVEELRR 122
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 15/116 (12%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLHYV------PGGFKAVSQMLN------LGGTPAHPPP 86
K+K C KF + + CP+ C+F H V P ++ + +G
Sbjct: 93 KTKLCCKFRAGT-CPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVE 151
Query: 87 PPRNSGAPPSFPDGSSPP--AVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV 140
PR PS ++ + K R C K+ + EGC +G+ C F H E R +V
Sbjct: 152 IPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESV 207
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 34 TGIGSKSKPCTKFFSTSGCPFGEGCHFLH 62
+G K + C KF++ GCP+GE C FLH
Sbjct: 169 SGRSFKGRHCKKFYTEEGCPYGESCTFLH 197
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLH 62
K++ C K+ T CPFG CHF H
Sbjct: 262 KTRICNKWEITGYCPFGAKCHFAH 285
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 265 NNFKTKLCENFAKG--SCTFGDRCHFAHGSEELRKSVI 300
+NFKT+LC A G C G RC FAHG +ELR S I
Sbjct: 272 HNFKTRLCMTHAAGINPCALGARCKFAHGLKELRASDI 309
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 264 SNNFKTKLCENFAK---GSCTFGDRCHFAHGSE 293
+N +KTKLC+NFA+ G C +G RC F H S+
Sbjct: 315 NNKYKTKLCKNFARGGSGVCPYGLRCEFVHPSD 347
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 99 DGSSPPAVKSRLCNKYNS-AEGCKFGDKCHFAHGEWELGRPTVPS 142
D P K+RLC + + C G +C FAHG EL +P+
Sbjct: 267 DSQLPHNFKTRLCMTHAAGINPCALGARCKFAHGLKELRASDIPT 311
>sp|Q5VR07|C3H1_ORYSJ Zinc finger CCCH domain-containing protein 1 OS=Oryza sativa subsp.
japonica GN=Os01g0174600 PE=2 SV=1
Length = 279
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 267 FKTKLCENFAK-GSCTFGDRCHFAHGSEELRKSV 299
+KT++CE F G C F D C FAHG EELR S+
Sbjct: 57 YKTRVCETFVTSGRCMFEDGCTFAHGDEELRPSL 90
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV 140
K+R+C + ++ C F D C FAHG+ EL RP++
Sbjct: 58 KTRVCETFVTSGRCMFEDGCTFAHGDEEL-RPSL 90
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 264 SNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 296
S+ +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 106 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC + CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 37.7 bits (86), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 267 FKTKLCENF-AKGSCTFGDRCHFAHGSEELR 296
+KT+LC F G C +G RCHF H +EE R
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERR 183
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 30/96 (31%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFP 98
K++ C F C +G+ C F H + ++ +L P +
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAH-------GIHELRSLTRHPKY--------------- 153
Query: 99 DGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 134
K+ LC +++ C +G +CHF H E
Sbjct: 154 --------KTELCRTFHTIGFCPYGPRCHFIHNAEE 181
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 264 SNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 296
S+ +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 106 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC + CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 37.7 bits (86), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 267 FKTKLCENF-AKGSCTFGDRCHFAHGSEELR 296
+KT+LC F G C +G RCHF H +EE R
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERR 183
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 30/96 (31%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFP 98
K++ C F C +G+ C F H + ++ +L P +
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAH-------GIHELRSLTRHPKY--------------- 153
Query: 99 DGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 134
K+ LC +++ C +G +CHF H E
Sbjct: 154 --------KTELCRTFHTIGFCPYGPRCHFIHNAEE 181
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 264 SNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 296
S+ +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 106 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC + CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 37.7 bits (86), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 267 FKTKLCENF-AKGSCTFGDRCHFAHGSEELR 296
+KT+LC F G C +G RCHF H +EE R
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERR 183
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 30/96 (31%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFP 98
K++ C F C +G+ C F H + ++ +L P +
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAH-------GIHELRSLTRHPKY--------------- 153
Query: 99 DGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 134
K+ LC +++ C +G +CHF H E
Sbjct: 154 --------KTELCRTFHTIGFCPYGPRCHFIHNAEE 181
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 237 ASAMVRELIVNVGSGSGHSMKSNSSSQ---------SNNFKTKLCENFAK-GSCTFGDRC 286
A A + + N+G+ + H + S+ ++ +KT+LC F + G C +G++C
Sbjct: 97 AVASLVTITENLGNMNLHRKLERTQSEPLPPQQPMNTSRYKTELCRPFEEAGECKYGEKC 156
Query: 287 HFAHGSEELR 296
FAHGS ELR
Sbjct: 157 QFAHGSHELR 166
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 94 PPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
PP P +S K+ LC + A CK+G+KC FAHG EL
Sbjct: 126 PPQQPMNTS--RYKTELCRPFEEAGECKYGEKCQFAHGSHEL 165
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 267 FKTKLCENF-AKGSCTFGDRCHFAHGSEE 294
+KT+ C F + G C +G RCHF H ++E
Sbjct: 174 YKTEYCRTFHSVGFCPYGPRCHFVHNADE 202
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 22 FKKSKQEMENFPTGIGSKSKPCTKFFSTSGCPFGEGCHFLH 62
F E+ N K++ C F S CP+G CHF+H
Sbjct: 158 FAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPYGPRCHFVH 198
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 104 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 134
P K+ C ++S C +G +CHF H E
Sbjct: 172 PKYKTEYCRTFHSVGFCPYGPRCHFVHNADE 202
>sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K OS=Rattus norvegicus
GN=Hnrnpk PE=1 SV=1
Length = 463
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 175 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQI 234
G T +++I LAG+IIGK G KQI +GA + I + R I + GT DQI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 235 KQASAMVR 242
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K OS=Oryctolagus cuniculus
GN=HNRNPK PE=2 SV=1
Length = 463
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 175 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQI 234
G T +++I LAG+IIGK G KQI +GA + I + R I + GT DQI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 235 KQASAMVR 242
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|P61979|HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K OS=Mus musculus GN=Hnrnpk
PE=1 SV=1
Length = 463
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 175 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQI 234
G T +++I LAG+IIGK G KQI +GA + I + R I + GT DQI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 235 KQASAMVR 242
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|P61978|HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK
PE=1 SV=1
Length = 463
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 175 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQI 234
G T +++I LAG+IIGK G KQI +GA + I + R I + GT DQI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 235 KQASAMVR 242
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 267 FKTKLCENFA-KGSCTFGDRCHFAHGSEELR 296
+KT+LCE+F KGSC +G +C FAHG EL+
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGELK 200
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 266 NFKTKLCENFAK-GSCTFGDRCHFAHGSE 293
NF+TK C N+ K G C +G RC F HG +
Sbjct: 207 NFRTKPCVNWEKLGYCPYGRRCCFKHGDD 235
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 88 PRNSGAPPSFPDGSSPPAVKSR------------LCNKYNSAEGCKFGDKCHFAHGEWEL 135
P+N + S + S+ P VKS+ LC + C +G KC FAHG EL
Sbjct: 140 PKNDASFSSEKESSAQPKVKSQVQETPKQLYKTELCESFTLKGSCPYGSKCQFAHGLGEL 199
>sp|Q5R5H8|HNRPK_PONAB Heterogeneous nuclear ribonucleoprotein K OS=Pongo abelii GN=HNRNPK
PE=2 SV=1
Length = 464
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 175 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQI 234
G T +++I LAG+IIGK G KQI +GA + I + R I + GT DQI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 235 KQASAMVR 242
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|Q4R4M6|HNRPK_MACFA Heterogeneous nuclear ribonucleoprotein K OS=Macaca fascicularis
GN=HNRNPK PE=2 SV=1
Length = 464
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 175 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQI 234
G T +++I LAG+IIGK G KQI +GA + I + R I + GT DQI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 235 KQASAMVR 242
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|Q3T0D0|HNRPK_BOVIN Heterogeneous nuclear ribonucleoprotein K OS=Bos taurus GN=HNRNPK
PE=2 SV=1
Length = 464
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 175 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQI 234
G T +++I LAG+IIGK G KQI +GA + I + R I + GT DQI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 235 KQASAMVR 242
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|Q5ZIQ3|HNRPK_CHICK Heterogeneous nuclear ribonucleoprotein K OS=Gallus gallus
GN=HNRNPK PE=2 SV=1
Length = 427
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 175 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQI 234
G T +++I LAG+IIGK G KQI +GA + I + R I + GT DQI
Sbjct: 349 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 408
Query: 235 KQASAMVR 242
+ A +++
Sbjct: 409 QNAQYLLQ 416
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV--PSYE 144
K+ LCNK+ C +GD+C FAHG EL RP + P Y+
Sbjct: 260 KTELCNKWEETGDCPYGDQCQFAHGVTEL-RPVIRHPRYK 298
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 267 FKTKLCENFAK-GSCTFGDRCHFAHGSEELRKSV 299
FKT+LC + + G C +GD+C FAHG ELR +
Sbjct: 259 FKTELCNKWEETGDCPYGDQCQFAHGVTELRPVI 292
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 31/104 (29%)
Query: 28 EMENFPTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPP 87
E+E + G+ K++ C K+ T CP+G+ C F H G T P
Sbjct: 250 ELEVYNQGMF-KTELCNKWEETGDCPYGDQCQFAH---------------GVTELRP--- 290
Query: 88 PRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHG 131
P K+ +C + + C +G +CHF H
Sbjct: 291 ------------VIRHPRYKTAVCRMVLAGDVCPYGHRCHFRHS 322
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans
GN=pie-1 PE=1 SV=1
Length = 335
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 245 IVNVGSGSGHSMKSNSSSQSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 296
+ + S++ + +KT+LC+ F + G C + D C +AHG +ELR
Sbjct: 77 LAQIDEAPATKRHSSAKDKHTEYKTRLCDAFRREGYCPYNDNCTYAHGQDELR 129
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 246 VNVGSGSGHSMKSNSSSQSNNF----KTKLCENFAKGSCTFGDRCHFAHGSE 293
+N S S + SNN + ++C NF +G+C +G RC F H +
Sbjct: 160 INRSSSSASKHHDENRRPSNNHGSSNRRQICHNFERGNCRYGPRCRFIHVEQ 211
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 106 VKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRP 138
K+RLC+ + C + D C +AHG+ EL P
Sbjct: 99 YKTRLCDAFRREGYCPYNDNCTYAHGQDELRVP 131
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 258 SNSSSQSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 296
S S S +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 118 SGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 157
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 106 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC + + CK+G+KC FAHG EL
Sbjct: 127 YKTELCRPFEESGTCKYGEKCQFAHGFHEL 156
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 267 FKTKLCENF-AKGSCTFGDRCHFAHGSEELR 296
+KT+LC F G C +G RCHF H ++E R
Sbjct: 165 YKTELCRTFHTIGFCPYGPRCHFIHNADERR 195
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 30/96 (31%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFP 98
K++ C F + C +GE C F H GF + +
Sbjct: 128 KTELCRPFEESGTCKYGEKCQFAH----GFHELRSL------------------------ 159
Query: 99 DGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 134
+ P K+ LC +++ C +G +CHF H E
Sbjct: 160 --TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 193
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV--PSYE 144
K+ LCNK+ C +GD+C FAHG EL RP + P Y+
Sbjct: 270 KTELCNKWEETGACPYGDQCQFAHGVAEL-RPVIRHPRYK 308
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 267 FKTKLCENFAK-GSCTFGDRCHFAHGSEELRKSV 299
FKT+LC + + G+C +GD+C FAHG ELR +
Sbjct: 269 FKTELCNKWEETGACPYGDQCQFAHGVAELRPVI 302
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 38/125 (30%)
Query: 13 DGASNGNG--GFKKSK-----QEMENFPTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVP 65
DGA G G KK + E E + G+ K++ C K+ T CP+G+ C F H V
Sbjct: 238 DGAEGGEHKVGVKKEEPPMGGLEFEVYNQGM-FKTELCNKWEETGACPYGDQCQFAHGV- 295
Query: 66 GGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDK 125
A P R+ P K+++C + C +G +
Sbjct: 296 ----------------AELRPVIRH-------------PRYKTQVCRMVLAGGVCPYGHR 326
Query: 126 CHFAH 130
CHF H
Sbjct: 327 CHFRH 331
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 253 GHSMKSNSSSQSNNFKTKLCENFAKG--SCTFGDRCHFAHGSEELRKS 298
G + S Q N+KT+LC A G C G RC FAHG +ELR +
Sbjct: 257 GFPIPETDSQQPPNYKTRLCMMHASGIKPCDMGARCKFAHGLKELRAT 304
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 264 SNNFKTKLCENFAKGS---CTFGDRCHFAHGSEELRKSV 299
+N +KTKLC+NFA+G C +G RC F H +++ +++
Sbjct: 312 NNKYKTKLCKNFARGGTGFCPYGLRCEFVHPTDKEFQNI 350
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 99 DGSSPPAVKSRLCNKYNS-AEGCKFGDKCHFAHGEWELGRPTVPS 142
D PP K+RLC + S + C G +C FAHG EL P+
Sbjct: 264 DSQQPPNYKTRLCMMHASGIKPCDMGARCKFAHGLKELRATDAPA 308
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 257 KSNSSSQSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 296
K+ + S +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 92 KAGAQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELR 132
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 106 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC + + CK+G+KC FAHG EL
Sbjct: 102 YKTELCRPFEESGACKYGEKCQFAHGFHEL 131
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 267 FKTKLCENF-AKGSCTFGDRCHFAHGSEELRKS 298
+KT+LC F G C +G RCH H +EE R++
Sbjct: 140 YKTELCRTFHTIGFCPYGPRCHLIHNAEERRQA 172
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 30/96 (31%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFP 98
K++ C F + C +GE C F H GF + +
Sbjct: 103 KTELCRPFEESGACKYGEKCQFAH----GFHELRSL------------------------ 134
Query: 99 DGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 134
+ P K+ LC +++ C +G +CH H E
Sbjct: 135 --TRHPKYKTELCRTFHTIGFCPYGPRCHLIHNAEE 168
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 257 KSNSSSQSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 296
K+ + S +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 122 KAGAQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELR 162
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 267 FKTKLCENF-AKGSCTFGDRCHFAHGSEELRKS 298
+KT+LC F G C +G RCHF H +EE R++
Sbjct: 170 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQA 202
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 106 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC + + CK+G+KC FAHG EL
Sbjct: 132 YKTELCRPFEESGACKYGEKCQFAHGFHEL 161
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 30/96 (31%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFP 98
K++ C F + C +GE C F H GF + +
Sbjct: 133 KTELCRPFEESGACKYGEKCQFAH----GFHELRSL------------------------ 164
Query: 99 DGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 134
+ P K+ LC +++ C +G +CHF H E
Sbjct: 165 --TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 198
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 263 QSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 296
S +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 150 NSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 184
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 106 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC + + CK+G+KC FAHG EL
Sbjct: 154 YKTELCRPFEESGTCKYGEKCQFAHGFHEL 183
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 260 SSSQSNNFKTKLCENF-AKGSCTFGDRCHFAHGSEELR 296
S ++ +KT+LC F G C +G RCHF H ++E R
Sbjct: 185 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERR 222
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 30/96 (31%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFP 98
K++ C F + C +GE C F H GF + +
Sbjct: 155 KTELCRPFEESGTCKYGEKCQFAH----GFHELRSL------------------------ 186
Query: 99 DGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 134
+ P K+ LC +++ C +G +CHF H E
Sbjct: 187 --TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 220
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 257 KSNSSSQSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 296
K+ + S +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 124 KAGAQVNSTRYKTELCRPFEENGACKYGEKCQFAHGFHELR 164
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 267 FKTKLCENF-AKGSCTFGDRCHFAHGSEELRKS 298
+KT+LC F G C +G RCHF H +EE R++
Sbjct: 172 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQA 204
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 52/145 (35%), Gaps = 45/145 (31%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFP 98
K++ C F C +GE C F H GF + +
Sbjct: 135 KTELCRPFEENGACKYGEKCQFAH----GFHELRSL------------------------ 166
Query: 99 DGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVP-SYEDPRAM------GG 151
+ P K+ LC +++ C +G +CHF H E R P + E P+ G
Sbjct: 167 --TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE--RRQAPGAGERPKLHHSLSFSGF 222
Query: 152 PMHGRMGGRLE------PPPQSLGA 170
P H LE PPPQS G+
Sbjct: 223 PNHSLDSPLLESPTSRTPPPQSSGS 247
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 106 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC + CK+G+KC FAHG EL
Sbjct: 134 YKTELCRPFEENGACKYGEKCQFAHGFHEL 163
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 106 VKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV--PSYE 144
K+ LCNK+ C +GD C FAHG EL RP + P Y+
Sbjct: 223 TKTELCNKWQETGTCPYGDHCQFAHGIKEL-RPVIRHPRYK 262
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 30/94 (31%)
Query: 38 SKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSF 97
+K++ C K+ T CP+G+ C F H G K + P R+
Sbjct: 223 TKTELCNKWQETGTCPYGDHCQFAH----GIKELR-------------PVIRH------- 258
Query: 98 PDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHG 131
P K+ +C + + C +G +CHF H
Sbjct: 259 ------PRYKTEVCRMVLAGDNCPYGHRCHFRHS 286
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 268 KTKLCENFAK-GSCTFGDRCHFAHGSEELR 296
KT+LC + + G+C +GD C FAHG +ELR
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELR 253
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 267 FKTKLCENFAKG-SCTFGDRCHFAHGSEELRKSV 299
+KT++C G +C +G RCHF H E K V
Sbjct: 261 YKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLV 294
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 106 VKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV--PSY 143
+K+ LCNK+ C +GD C FAHG EL RP + P Y
Sbjct: 233 MKTELCNKWQETGACCYGDNCQFAHGIDEL-RPVIRHPRY 271
Score = 38.5 bits (88), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 267 FKTKLCENFAK-GSCTFGDRCHFAHGSEELR 296
KT+LC + + G+C +GD C FAHG +ELR
Sbjct: 233 MKTELCNKWQETGACCYGDNCQFAHGIDELR 263
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 266 NFKTKLCENFAK-GSCTFGDRCHFAHGSEELRKS 298
+KT+LC F++ G C +G +C FAHG ELR++
Sbjct: 103 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQA 136
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 266 NFKTKLCENF-AKGSCTFGDRCHFAHGSEE 294
+KT+LC F +G C +G RCHF H E
Sbjct: 141 KYKTELCHKFYLQGRCPYGSRCHFIHNPSE 170
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLH------YVPGGFKAVSQMLNLGGTPA----HPPPP 87
K++ C KF+ CP+G CHF+H PG + Q ++ G P+ PPPP
Sbjct: 143 KTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPP 201
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC ++ + C++G KC FAHG EL
Sbjct: 105 KTELCRTFSESGRCRYGAKCQFAHGLGEL 133
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 104 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 134
P K+ LC+K+ C +G +CHF H E
Sbjct: 140 PKYKTELCHKFYLQGRCPYGSRCHFIHNPSE 170
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 267 FKTKLCENFA-KGSCTFGDRCHFAHGSEELRK 297
+KT+ C+N+ G+C +G +C FAHG++EL++
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELKE 358
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV-PSYEDPRAMGGPMHG 155
K+ C + + C++G KC FAHG EL P P Y+ R M+G
Sbjct: 328 KTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYG 377
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 46/138 (33%), Gaps = 35/138 (25%)
Query: 43 CTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSS 102
C +F T GC +GE C F H +P A + LN G P P
Sbjct: 164 CKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRP------------------ 205
Query: 103 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYEDPRAMGGPMHGRMGGRLE 162
C Y CK+G +C F H DP +GG G
Sbjct: 206 ----GEVECPYYMRNGSCKYGAECKFNH-------------PDPTTIGGTDSPSFRGNNG 248
Query: 163 PPPQSLGAAASFGASATA 180
+ A+F AS+T+
Sbjct: 249 VSIGTFSPKATFQASSTS 266
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 26/119 (21%)
Query: 13 DGASNGNGGFKKSKQEMEN-FPTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAV 71
DG G+G S+ E EN +P G++ C+ + T C FG C F H + F+
Sbjct: 90 DGYGYGDGW---SENESENVYPVRPGAED--CSFYMRTGSCKFGSSCKFNHPLARKFQIA 144
Query: 72 SQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAH 130
R++ DG + C Y GCK+G+ C F H
Sbjct: 145 -----------------RDNKVREKEDDGGKLGLID---CKYYFRTGGCKYGETCRFNH 183
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 48/134 (35%), Gaps = 27/134 (20%)
Query: 3 LGGGRKRGRHDGASNGNGGFKKSKQE----MENFPTGIGSKSKPCTKFFSTSGCPFGEGC 58
LG G+ + + K+ K E + +P G K CT + T C FGE C
Sbjct: 138 LGAHNTIGQTEAWYTTDYFTKRPKLESTSHLPIYPQRAGEKD--CTHYMQTRTCKFGESC 195
Query: 59 HFLH--YVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKYNS 116
F H +VP GG P + P P+ P C Y
Sbjct: 196 RFDHPIWVPE-----------GGIP--------DWKEAPVVPNEEYPERPGEPDCPYYIK 236
Query: 117 AEGCKFGDKCHFAH 130
+ CK+G KC F H
Sbjct: 237 TQRCKYGSKCKFNH 250
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 111 CNKYNSAEGCKFGDKCHFAHGEW--ELG------RPTVPSYEDPRAMGGP 152
C Y CKFG+ C F H W E G P VP+ E P G P
Sbjct: 180 CTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEP 229
>sp|Q9PW80|IF2B3_DANRE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Danio rerio
GN=igf2bp3 PE=1 SV=1
Length = 582
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 163 PPPQSLGAAASFGA---SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE-V 218
PPP + SFGA S T + I A GAIIGK G + KQ+ R GA + I + +
Sbjct: 391 PPPGAQAGYQSFGAQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGI 450
Query: 219 DPNLRNIELEG 229
D R + + G
Sbjct: 451 DAKQRMVIISG 461
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 163 PPPQ---SLGAAASFGASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE 217
PP Q SLGA + ++ + + GAIIGK G + I + T +K+ I E
Sbjct: 177 PPRQGSPSLGARPKLQSDVPLRLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKE 234
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
subsp. japonica GN=Os01g0917400 PE=2 SV=2
Length = 439
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 83/260 (31%), Gaps = 45/260 (17%)
Query: 43 CTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSS 102
C + T C FG C F H A LN G P P
Sbjct: 131 CQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRP------------------ 172
Query: 103 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEW------ELGRPTVPSYEDPRAMGGPMHGR 156
+ C Y CK+G+ C F H E G P PS G P G
Sbjct: 173 ----SEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGT 228
Query: 157 MGGRLEPPPQSLGAAASFGASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDH 216
M P SF S + + A I+ + V TG + +
Sbjct: 229 MASWAFP-------RGSFIPS--PRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSS 279
Query: 217 EVDPNLRNIELEGTFDQIKQASAMV-RELIVNVGSGSGHSMKSNSSSQSNNFKTK----L 271
E L++ + T+ +Q A + +++ S + + + + N F +
Sbjct: 280 ES--RLQSPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPE 337
Query: 272 CENFAK-GSCTFGDRCHFAH 290
C+ + K G C FG C F H
Sbjct: 338 CQYYMKTGDCKFGAVCKFHH 357
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 266 NFKTKLCENFAK-GSCTFGDRCHFAHGSEELRKS 298
+KT+LC F++ G C +G +C FAHG ELR++
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQA 134
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 261 SSQSNNFKTKLCENF-AKGSCTFGDRCHFAHGSEE 294
+S+ +KT+LC F +G C +G RCHF H E
Sbjct: 134 ASRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLH------YVPGGFKAVSQMLNLGGTPA----HPPP 86
K++ C KF+ CP+G CHF+H PG + Q ++ G P+ PPP
Sbjct: 141 KTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPHVLRQSISFSGLPSGRRTSPPP 198
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC ++ + C++G KC FAHG EL
Sbjct: 103 KTELCRTFSESGRCRYGAKCQFAHGLGEL 131
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 19/75 (25%)
Query: 104 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYEDPRAMGGPMHGRM------ 157
P K+ LC+K+ C +G +CHF H PS ED A G P R
Sbjct: 138 PKYKTELCHKFYLQGRCPYGSRCHFIHN---------PS-EDLAAPGHPHVLRQSISFSG 187
Query: 158 ---GGRLEPPPQSLG 169
G R PPP SL
Sbjct: 188 LPSGRRTSPPPASLA 202
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 266 NFKTKLCENFAK-GSCTFGDRCHFAHGSEELRK 297
+KT+LC F++ G C +G +C FAHG ELR+
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 133
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 262 SQSNNFKTKLCENF-AKGSCTFGDRCHFAHGSEE 294
S+ +KT+LC F +G C +G RCHF H E
Sbjct: 135 SRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPT 139
K+ LC ++ + C++G KC FAHG EL +P+
Sbjct: 103 KTELCRTFSESGRCRYGAKCQFAHGLGELRQPS 135
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLH------YVPGGFKAVSQMLNLGGTPA----HPPP 86
K++ C KF+ CP+G CHF+H PG + Q ++ G P+ PPP
Sbjct: 141 KTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPHVLRQSISFSGLPSGRRTSPPP 198
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 19/75 (25%)
Query: 104 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYEDPRAMGGPMHGRM------ 157
P K+ LC+K+ C +G +CHF H PS ED A G P R
Sbjct: 138 PKYKTELCHKFYLQGRCPYGSRCHFIHN---------PS-EDLAAPGHPHVLRQSISFSG 187
Query: 158 ---GGRLEPPPQSLG 169
G R PPP SL
Sbjct: 188 LPSGRRTSPPPASLA 202
>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
thaliana GN=At5g63260 PE=2 SV=2
Length = 435
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 41/125 (32%), Gaps = 39/125 (31%)
Query: 43 CTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSS 102
C +F T GC +GE C F H A LN G P P
Sbjct: 154 CKYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRP------------------ 195
Query: 103 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYEDPRAMGG---PMH-GRMG 158
+ C Y CKFG C F H DP A+GG P++ G G
Sbjct: 196 ----GEKECPFYMRNGSCKFGSDCKFNH-------------PDPTAIGGVDSPLYRGNNG 238
Query: 159 GRLEP 163
G P
Sbjct: 239 GSFSP 243
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes
GN=mkrn1 PE=2 SV=1
Length = 429
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 45 KFFSTSGCPFGEGCHFLHYVPGGFKAVS--QMLNLGGTPAHPPPPPRNSGAPPSF 97
KFF C FGE C F H P + VS QML L TP PP P S + P
Sbjct: 55 KFFQKGNCVFGERCRFEHCKPTKSEEVSNPQMLLLSSTP--PPIDPECSESGPRL 107
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 271 LCENFAKGSCTFGDRCHFAH 290
+C+ F KG+C FG+RC F H
Sbjct: 53 MCKFFQKGNCVFGERCRFEH 72
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 266 NFKTKLCENFAK-GSCTFGDRCHFAHGSEELRKS 298
+KT+LC +++ G C +G +C FAHG ELR++
Sbjct: 96 RYKTELCRTYSESGRCRYGAKCQFAHGPGELRQA 129
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC Y+ + C++G KC FAHG EL
Sbjct: 98 KTELCRTYSESGRCRYGAKCQFAHGPGEL 126
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 267 FKTKLCENF-AKGSCTFGDRCHFAHGSEE 294
+KT+LC F +G C +G RCHF H E
Sbjct: 135 YKTELCHKFYLQGRCPYGSRCHFIHNPTE 163
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 104 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 134
P K+ LC+K+ C +G +CHF H E
Sbjct: 133 PKYKTELCHKFYLQGRCPYGSRCHFIHNPTE 163
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 38.1 bits (87), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 266 NFKTKLCENFAK-GSCTFGDRCHFAHGSEELRKS 298
+KT+LC +++ G C +G +C FAHG ELR++
Sbjct: 95 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 128
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 107 KSRLCNKYNSAEGCKFGDKCHFAHGEWEL 135
K+ LC Y+ + C++G KC FAHG EL
Sbjct: 97 KTELCRTYSESGRCRYGAKCQFAHGLGEL 125
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 267 FKTKLCENF-AKGSCTFGDRCHFAHGSEE 294
+KT+LC F +G C +G RCHF H E
Sbjct: 134 YKTELCHKFYLQGRCPYGSRCHFIHNPTE 162
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 39 KSKPCTKFFSTSGCPFGEGCHFLH------YVPGGFKAVSQMLNLGGTPA 82
K++ C KF+ CP+G CHF+H +PG + Q ++ G P+
Sbjct: 135 KTELCHKFYLQGRCPYGSRCHFIHNPTEDLALPGQPHVLRQSISFSGLPS 184
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 104 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 134
P K+ LC+K+ C +G +CHF H E
Sbjct: 132 PKYKTELCHKFYLQGRCPYGSRCHFIHNPTE 162
>sp|O42254|IF2B1_CHICK Insulin-like growth factor 2 mRNA-binding protein 1 OS=Gallus
gallus GN=IGF2BP1 PE=1 SV=1
Length = 576
Score = 38.1 bits (87), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 163 PPPQSLGAAASFGA-----SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE 217
PPP S+ AA + + T + I A+ GAIIGK G + KQ+ R A + I E
Sbjct: 385 PPPSSVSGAAPYSSFMPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPE 444
Query: 218 V-DPNLRNIELEG 229
D +R + + G
Sbjct: 445 TPDSKVRMVVITG 457
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 83/216 (38%), Gaps = 48/216 (22%)
Query: 62 HYVPGGFKAVSQMLNLGG-------TPAHPPPPPRNSGAPP--SFPDGSSPPAVKSRLCN 112
H +PG LNL + A PPPP SGA P SF PP ++
Sbjct: 363 HLIPG--------LNLAAVGLFPASSNAVPPPPSSVSGAAPYSSF----MPPEQETVHVF 410
Query: 113 KYNSAEGCKFGDK-------CHFAHGEWELGRPTVP-SYEDPRAMGGP------MHGRMG 158
A G G K FA ++ P P S + GP GR+
Sbjct: 411 IPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEAQFKAQGRIY 470
Query: 159 GRLEPPPQSLGAAASFGASATAK----ISIDAKLAGAIIGKNGVNSKQICRLTGAKLSI- 213
G+L+ FG K I + A AG +IGK G ++ LT A++ +
Sbjct: 471 GKLK-------EENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVP 523
Query: 214 RDHEVDPNLRNI-ELEGTFDQIKQASAMVRELIVNV 248
RD D N + I ++ G F + A +R+++ V
Sbjct: 524 RDQTPDENEQVIVKIIGHFYASQMAQRKIRDILAQV 559
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,539,963
Number of Sequences: 539616
Number of extensions: 6033629
Number of successful extensions: 28296
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 25730
Number of HSP's gapped (non-prelim): 2432
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)