Query 022221
Match_columns 300
No_of_seqs 207 out of 1061
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.7 1.7E-18 5.8E-23 126.1 3.4 71 34-134 6-76 (77)
2 1m9o_A Tristetraproline; Cys3H 99.7 2.4E-17 8.1E-22 120.0 3.6 34 103-136 7-40 (77)
3 2d9n_A Cleavage and polyadenyl 99.4 4E-13 1.4E-17 97.4 5.3 66 33-139 3-68 (77)
4 2cqe_A KIAA1064 protein; CCCH 99.3 8.6E-13 3E-17 99.9 3.9 53 35-132 8-60 (98)
5 2rhk_C Cleavage and polyadenyl 99.3 1.3E-12 4.5E-17 93.3 2.3 61 34-135 10-70 (72)
6 3d2q_A Muscleblind-like protei 99.1 4E-11 1.4E-15 85.1 2.0 64 38-136 4-68 (70)
7 2d9m_A Zinc finger CCCH-type d 99.0 5.8E-11 2E-15 82.5 1.2 30 268-297 19-48 (69)
8 2d9n_A Cleavage and polyadenyl 99.0 2.6E-10 9E-15 82.4 4.2 28 104-132 6-33 (77)
9 2cqe_A KIAA1064 protein; CCCH 99.0 4.5E-10 1.5E-14 84.9 5.3 26 105-131 10-35 (98)
10 1x4n_A FAR upstream element bi 99.0 1.3E-10 4.5E-15 87.0 2.3 73 177-249 14-86 (92)
11 1wvn_A Poly(RC)-binding protei 99.0 7.7E-11 2.6E-15 86.4 1.0 74 175-248 3-76 (82)
12 1zzk_A Heterogeneous nuclear r 99.0 9.8E-11 3.4E-15 85.8 1.3 72 177-248 6-77 (82)
13 2hh3_A KH-type splicing regula 99.0 9.3E-11 3.2E-15 90.1 0.7 75 177-251 10-84 (106)
14 2e5s_A Otthump00000018578; ZF- 98.9 1.5E-10 5E-15 87.5 1.2 65 37-136 17-82 (98)
15 2p2r_A Poly(RC)-binding protei 98.9 9.3E-11 3.2E-15 84.6 0.0 70 177-246 4-73 (76)
16 3d2q_A Muscleblind-like protei 98.9 3.8E-10 1.3E-14 80.0 2.5 30 267-297 40-69 (70)
17 2hh2_A KH-type splicing regula 98.9 6.5E-10 2.2E-14 85.6 3.2 71 179-249 8-81 (107)
18 2rhk_C Cleavage and polyadenyl 98.9 5.5E-10 1.9E-14 79.6 2.4 28 104-132 12-39 (72)
19 1j5k_A Heterogeneous nuclear r 98.9 2.1E-10 7.3E-15 85.3 -0.4 72 177-248 13-84 (89)
20 1dtj_A RNA-binding neurooncolo 98.8 4.9E-10 1.7E-14 80.8 1.2 69 178-246 3-74 (76)
21 1x4m_A FAR upstream element bi 98.8 1.1E-09 3.7E-14 82.3 2.6 73 177-249 14-88 (94)
22 2dgr_A Ring finger and KH doma 98.8 1E-09 3.6E-14 80.4 1.4 69 176-247 8-76 (83)
23 2axy_A Poly(RC)-binding protei 98.8 5.7E-10 1.9E-14 79.8 -0.3 67 178-246 5-71 (73)
24 1ec6_A RNA-binding protein NOV 98.8 8.5E-10 2.9E-14 81.7 0.2 70 178-247 3-75 (87)
25 2opv_A KHSRP protein; KH domai 98.7 1.8E-09 6E-14 79.6 1.4 69 177-245 13-83 (85)
26 2e5s_A Otthump00000018578; ZF- 98.7 2.8E-09 9.6E-14 80.4 2.5 30 267-297 54-83 (98)
27 2d9m_A Zinc finger CCCH-type d 98.6 3.5E-09 1.2E-13 73.5 0.1 33 104-137 16-48 (69)
28 3d2n_A Muscleblind-like protei 98.6 1.5E-08 5E-13 74.0 3.1 64 36-136 5-69 (83)
29 1we8_A Tudor and KH domain con 98.6 4.6E-09 1.6E-13 80.4 0.3 70 178-247 15-86 (104)
30 1vig_A Vigilin; RNA-binding pr 98.5 3.3E-08 1.1E-12 70.2 1.5 66 177-244 4-69 (71)
31 2ctl_A Vigilin; K homology typ 98.5 4E-08 1.4E-12 74.1 1.8 71 177-247 16-87 (97)
32 2cte_A Vigilin; K homology typ 98.4 4.3E-08 1.5E-12 73.5 0.6 71 177-249 16-86 (94)
33 2rpp_A Muscleblind-like protei 98.4 1.6E-07 5.5E-12 69.3 3.5 64 36-136 13-77 (89)
34 1j4w_A FUSE binding protein; s 98.4 3.9E-08 1.3E-12 81.9 -0.3 73 177-249 2-74 (174)
35 2ctm_A Vigilin; K homology typ 98.3 1.1E-07 3.7E-12 71.4 1.4 73 176-249 15-87 (95)
36 2jvz_A KH type-splicing, FAR u 98.3 7.2E-08 2.5E-12 79.4 0.5 70 178-247 91-160 (164)
37 3d2n_A Muscleblind-like protei 98.3 2.1E-07 7.1E-12 67.9 2.4 28 269-297 43-70 (83)
38 2jvz_A KH type-splicing, FAR u 98.3 1.8E-07 6.2E-12 76.9 2.0 72 178-249 2-75 (164)
39 1j4w_A FUSE binding protein; s 98.3 1.4E-07 4.8E-12 78.6 1.2 68 177-244 103-173 (174)
40 2anr_A Neuro-oncological ventr 98.3 1.2E-07 4.1E-12 79.2 0.4 71 177-247 103-175 (178)
41 3krm_A Insulin-like growth fac 98.3 1.6E-07 5.6E-12 77.2 1.0 71 178-248 3-74 (163)
42 2jzx_A Poly(RC)-binding protei 98.2 9.5E-08 3.3E-12 78.4 -0.7 69 178-246 89-158 (160)
43 2ctk_A Vigilin; K homology typ 98.2 1.6E-07 5.4E-12 71.7 0.5 68 178-247 17-84 (104)
44 3krm_A Insulin-like growth fac 98.2 1.5E-07 5.1E-12 77.5 0.2 72 178-249 85-158 (163)
45 2anr_A Neuro-oncological ventr 98.2 2.2E-07 7.5E-12 77.6 0.3 73 176-248 4-79 (178)
46 2qnd_A FMR1 protein; KH domain 98.1 4.7E-07 1.6E-11 73.2 -0.3 68 180-247 69-142 (144)
47 2rpp_A Muscleblind-like protei 98.0 1.9E-06 6.3E-11 63.6 2.4 28 269-297 51-78 (89)
48 2cpq_A FragIle X mental retard 98.0 3.5E-06 1.2E-10 62.2 3.1 71 174-249 11-83 (91)
49 2jzx_A Poly(RC)-binding protei 98.0 7.6E-07 2.6E-11 73.0 -0.8 68 178-247 5-72 (160)
50 3u9g_A Zinc finger CCCH-type a 97.9 8.1E-06 2.8E-10 69.6 3.9 21 271-292 177-197 (229)
51 2ctj_A Vigilin; K homology typ 97.8 3.9E-06 1.3E-10 62.8 0.8 72 176-249 15-87 (95)
52 2ctf_A Vigilin; K homology typ 97.6 1.3E-05 4.5E-10 60.7 1.1 67 178-249 27-94 (102)
53 2fc6_A Nuclear, target of EGR1 97.2 0.00014 4.7E-09 46.6 2.2 29 37-65 17-45 (50)
54 1k1g_A SF1-BO isoform; splicin 97.1 0.00012 4.2E-09 57.8 1.5 70 178-247 7-99 (131)
55 3n89_A Defective in GERM LINE 97.1 0.00017 6E-09 66.6 2.4 70 175-244 27-103 (376)
56 2yqr_A KIAA0907 protein; struc 97.1 9E-05 3.1E-09 57.6 0.4 71 178-248 12-100 (119)
57 3v69_A Protein filia; RNA-bind 97.0 0.00032 1.1E-08 55.1 2.8 66 179-245 57-122 (140)
58 2e3u_A PH-DIM2P, hypothetical 96.5 0.00044 1.5E-08 59.4 -0.1 63 178-245 34-101 (219)
59 2e3u_A PH-DIM2P, hypothetical 96.4 0.00034 1.2E-08 60.2 -1.3 53 187-246 138-190 (219)
60 2bl5_A MGC83862 protein, quaki 96.3 0.00054 1.8E-08 54.6 -0.4 70 179-248 3-102 (140)
61 3u9g_A Zinc finger CCCH-type a 96.3 0.0019 6.5E-08 55.0 2.9 43 40-132 151-197 (229)
62 2fc6_A Nuclear, target of EGR1 96.3 0.0017 5.7E-08 41.6 1.7 28 266-293 17-45 (50)
63 3u1k_A Polyribonucleotide nucl 96.1 0.0014 4.8E-08 64.7 1.3 62 178-245 567-629 (630)
64 1tua_A Hypothetical protein AP 96.0 0.0013 4.4E-08 55.2 0.4 62 180-246 6-72 (191)
65 3n89_A Defective in GERM LINE 96.0 0.0025 8.6E-08 58.8 2.2 69 177-245 185-259 (376)
66 2qnd_A FMR1 protein; KH domain 95.8 0.0036 1.2E-07 50.1 2.1 60 177-239 3-62 (144)
67 1tua_A Hypothetical protein AP 95.6 0.001 3.5E-08 55.8 -1.9 53 187-246 107-159 (191)
68 3u1l_A PRE-mRNA-splicing facto 93.6 0.011 3.8E-07 51.4 -0.3 22 270-291 71-92 (240)
69 4aid_A Polyribonucleotide nucl 93.6 0.02 7E-07 57.2 1.6 65 179-249 571-636 (726)
70 3u1l_A PRE-mRNA-splicing facto 91.6 0.04 1.4E-06 47.8 0.5 27 40-67 70-96 (240)
71 2lhn_A Nuclear polyadenylated 88.0 0.091 3.1E-06 37.4 0.0 21 40-64 9-29 (80)
72 2lhn_A Nuclear polyadenylated 84.6 0.2 6.9E-06 35.6 0.0 19 110-132 54-72 (80)
73 3v33_A Ribonuclease ZC3H12A; r 82.3 0.26 9E-06 42.0 0.0 28 266-295 189-216 (223)
74 3v33_A Ribonuclease ZC3H12A; r 82.0 0.27 9.4E-06 41.9 0.0 24 38-64 190-213 (223)
75 3cdi_A Polynucleotide phosphor 70.5 0.88 3E-05 45.5 0.0 61 179-245 561-622 (723)
76 1e3p_A Guanosine pentaphosphat 65.2 1.4 4.9E-05 44.2 0.3 37 179-215 599-635 (757)
77 2kqb_A Aprataxin and PNK-like 57.8 3.4 0.00012 29.7 1.1 8 120-127 59-66 (89)
78 2cxc_A NUSA; transcription ter 50.8 3.1 0.00011 32.9 -0.1 40 178-217 36-75 (144)
79 2asb_A Transcription elongatio 48.0 4.5 0.00016 34.9 0.5 40 177-216 183-222 (251)
80 2cxc_A NUSA; transcription ter 41.4 2.2 7.6E-05 33.7 -2.3 39 177-215 102-140 (144)
81 1k0r_A NUSA; two component arr 37.9 8.3 0.00028 35.2 0.6 40 177-216 306-345 (366)
82 1hh2_P NUSA, N utilization sub 37.9 8 0.00027 35.0 0.5 40 177-216 302-341 (344)
83 2hgo_A CASSIICOLIN; toxin, dis 23.4 16 0.00053 19.4 -0.2 14 272-287 6-19 (27)
84 1wh9_A 40S ribosomal protein S 20.6 14 0.00049 26.6 -0.9 28 179-206 36-63 (92)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.72 E-value=1.7e-18 Score=126.11 Aligned_cols=71 Identities=30% Similarity=0.667 Sum_probs=30.5
Q ss_pred CCCccccccccccccccccCCCCCCCCCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 022221 34 TGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNK 113 (300)
Q Consensus 34 ~~~~~Kt~lC~~y~~~g~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kt~~C~~ 113 (300)
....|||+||++|+.+|.|++|++|+|+|+..+++.. ...+.+||++|++
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~------------------------------~~~~~~k~~~C~~ 55 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA------------------------------NRHPKYKTELCHK 55 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT------------------------------C------------
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccc------------------------------cccccccCCcccc
Confidence 3467999999888789999999999999998765311 0124678999998
Q ss_pred cccCcCCCCCCCCccCCCccc
Q 022221 114 YNSAEGCKFGDKCHFAHGEWE 134 (300)
Q Consensus 114 ~~~~~~C~~g~~C~f~H~~~~ 134 (300)
|...|.|++|++|+|+|+..|
T Consensus 56 f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 56 FKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp ---------------------
T ss_pred hhhCcCCCCcCcCCCCCCCCC
Confidence 888888999999999998765
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.66 E-value=2.4e-17 Score=120.01 Aligned_cols=34 Identities=41% Similarity=0.897 Sum_probs=30.1
Q ss_pred CCccccccccccccCcCCCCCCCCccCCCccccC
Q 022221 103 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELG 136 (300)
Q Consensus 103 ~~~~kt~~C~~~~~~~~C~~g~~C~f~H~~~~~~ 136 (300)
..+|||++|++|+..|.|++|++|+|+|+..+++
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~ 40 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR 40 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhc
Confidence 4589999999998778899999999999987665
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4e-13 Score=97.37 Aligned_cols=66 Identities=26% Similarity=0.442 Sum_probs=51.6
Q ss_pred CCCCccccccccccccccccCCCCCCCCCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 022221 33 PTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCN 112 (300)
Q Consensus 33 ~~~~~~Kt~lC~~y~~~g~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kt~~C~ 112 (300)
+....+|+++|++| ..|.|++|++|+|+|+.... ++.+|+
T Consensus 3 p~~~~~k~~~C~~f-l~G~C~~G~~C~fsH~~~~~---------------------------------------~~~~C~ 42 (77)
T 2d9n_A 3 SGSSGEKTVVCKHW-LRGLCKKGDQCEFLHEYDMT---------------------------------------KMPECY 42 (77)
T ss_dssp CCCSCCTTSBCHHH-HTTCCSCTTSSSSBCSCCTT---------------------------------------TSCBCH
T ss_pred CCCCCCcceeCHhH-ccCcCCCCCCCCCccccccC---------------------------------------cCCCCc
Confidence 34567899999655 55999999999999986321 245799
Q ss_pred ccccCcCCCCCCCCccCCCccccCCCC
Q 022221 113 KYNSAEGCKFGDKCHFAHGEWELGRPT 139 (300)
Q Consensus 113 ~~~~~~~C~~g~~C~f~H~~~~~~~~~ 139 (300)
+|++.|.|. |++|+|+|...+.....
T Consensus 43 ~f~~~G~C~-~~~C~f~H~~~~~~~~~ 68 (77)
T 2d9n_A 43 FYSKFGECS-NKECPFLHIDPESKIKD 68 (77)
T ss_dssp HHHHTCCCC-CSSCSSBCCCTTSSCSS
T ss_pred ccCCCCccC-CCCeeccCCCccccCCC
Confidence 999966799 99999999986655443
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.31 E-value=8.6e-13 Score=99.91 Aligned_cols=53 Identities=28% Similarity=0.627 Sum_probs=45.3
Q ss_pred CCccccccccccccccccCCCCCCCCCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 022221 35 GIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKY 114 (300)
Q Consensus 35 ~~~~Kt~lC~~y~~~g~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kt~~C~~~ 114 (300)
.+.+|+.+|++| ..|.|++|++|+|+|+. .+|++|
T Consensus 8 ~~~~k~~lC~~f-~~G~C~~G~~C~f~H~~--------------------------------------------~~C~~f 42 (98)
T 2cqe_A 8 ELPKKRELCKFY-ITGFCARAENCPYMHGD--------------------------------------------FPCKLY 42 (98)
T ss_dssp CCSCCCSBCTTT-TTTCCSCSTTCSSBSSS--------------------------------------------SBCSHH
T ss_pred CCCCCCccCccc-ccCcCCCCCCCCCCCCC--------------------------------------------CcCcCc
Confidence 356899999655 68999999999999972 259999
Q ss_pred ccCcCCCCCCCCccCCCc
Q 022221 115 NSAEGCKFGDKCHFAHGE 132 (300)
Q Consensus 115 ~~~~~C~~g~~C~f~H~~ 132 (300)
+..|.|++|++|+|+|..
T Consensus 43 ~~~G~C~~G~~C~f~H~~ 60 (98)
T 2cqe_A 43 HTTGNCINGDDCMFSHDP 60 (98)
T ss_dssp HHTSCCSSCTTCSSBCCC
T ss_pred ccCCcCCCCCCCcccCCC
Confidence 877779999999999975
No 5
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.26 E-value=1.3e-12 Score=93.26 Aligned_cols=61 Identities=28% Similarity=0.466 Sum_probs=48.0
Q ss_pred CCCccccccccccccccccCCCCCCCCCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 022221 34 TGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNK 113 (300)
Q Consensus 34 ~~~~~Kt~lC~~y~~~g~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kt~~C~~ 113 (300)
.+.+.|+++|++| ..|.|++|++|+|+|+.... ++.+|++
T Consensus 10 ~~~~~k~~vCk~f-l~G~C~~G~~C~fsH~~~~~---------------------------------------~~~~C~~ 49 (72)
T 2rhk_C 10 HMSGEKTVVCKHW-LRGLCKKGDQCEFLHEYDMT---------------------------------------KMSECYF 49 (72)
T ss_dssp SSSCCCCSBCHHH-HTTCCCCGGGSSSBCSCCTT---------------------------------------SCCBCHH
T ss_pred cCCCCcCeeCHHH-hcCCCCCCCCCCCccccccc---------------------------------------cCCcccc
Confidence 4567899999655 55999999999999986311 3457999
Q ss_pred cccCcCCCCCCCCccCCCcccc
Q 022221 114 YNSAEGCKFGDKCHFAHGEWEL 135 (300)
Q Consensus 114 ~~~~~~C~~g~~C~f~H~~~~~ 135 (300)
|++.|.|.+ ++|.|.|...+.
T Consensus 50 f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 50 YSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp HHHHSCCSB-TTCCSBCCCCC-
T ss_pred cCCCCCCCC-CCeeccCCCccc
Confidence 999566999 999999987543
No 6
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.06 E-value=4e-11 Score=85.13 Aligned_cols=64 Identities=22% Similarity=0.511 Sum_probs=49.5
Q ss_pred cccccccccccccccCCCC-CCCCCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 022221 38 SKSKPCTKFFSTSGCPFGE-GCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKYNS 116 (300)
Q Consensus 38 ~Kt~lC~~y~~~g~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kt~~C~~~~~ 116 (300)
.|..+|+.| ..|.|..|+ .|+|+|...+.+.. ....++.+|.+|++
T Consensus 4 ~k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~~~--------------------------------~~~~~~~vC~~flk 50 (70)
T 3d2q_A 4 DRLEVCREY-QRGNCNRGENDCRFAHPADSTMID--------------------------------TNDNTVTVCMDYIK 50 (70)
T ss_dssp CEEEBCHHH-HTTCCSSCTTTCSSBCCCTTSCCB--------------------------------TTTTEEEBCHHHHT
T ss_pred ccchhCHHH-hcCCCCCCCCCCCCccCccccccc--------------------------------ccCCcceeccccCc
Confidence 467899666 789999999 59999987543210 12446788999998
Q ss_pred CcCCCCCCCCccCCCccccC
Q 022221 117 AEGCKFGDKCHFAHGEWELG 136 (300)
Q Consensus 117 ~~~C~~g~~C~f~H~~~~~~ 136 (300)
+. |..+ .|+|+|...+|+
T Consensus 51 G~-C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 51 GR-CSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp TC-CCCT-TCCSBCCCHHHH
T ss_pred CC-CCCC-CcCeeCCHHHHh
Confidence 65 9999 999999987775
No 7
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.8e-11 Score=82.52 Aligned_cols=30 Identities=37% Similarity=0.967 Sum_probs=28.5
Q ss_pred ccccccccccccccCCCCCcCCCCcchhcc
Q 022221 268 KTKLCENFAKGSCTFGDRCHFAHGSEELRK 297 (300)
Q Consensus 268 kt~~C~~~~~G~C~~G~~C~faH~~~el~~ 297 (300)
|++||.+|++|.|+||++|+||||++|||.
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence 669999999999999999999999999986
No 8
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.6e-10 Score=82.45 Aligned_cols=28 Identities=32% Similarity=0.688 Sum_probs=24.3
Q ss_pred CccccccccccccCcCCCCCCCCccCCCc
Q 022221 104 PAVKSRLCNKYNSAEGCKFGDKCHFAHGE 132 (300)
Q Consensus 104 ~~~kt~~C~~~~~~~~C~~g~~C~f~H~~ 132 (300)
..+|+.+|+||+.+ .|++|+.|.|+|..
T Consensus 6 ~~~k~~~C~~fl~G-~C~~G~~C~fsH~~ 33 (77)
T 2d9n_A 6 SGEKTVVCKHWLRG-LCKKGDQCEFLHEY 33 (77)
T ss_dssp SCCTTSBCHHHHTT-CCSCTTSSSSBCSC
T ss_pred CCCcceeCHhHccC-cCCCCCCCCCcccc
Confidence 46788999999984 59999999999965
No 9
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.98 E-value=4.5e-10 Score=84.92 Aligned_cols=26 Identities=31% Similarity=0.691 Sum_probs=22.5
Q ss_pred ccccccccccccCcCCCCCCCCccCCC
Q 022221 105 AVKSRLCNKYNSAEGCKFGDKCHFAHG 131 (300)
Q Consensus 105 ~~kt~~C~~~~~~~~C~~g~~C~f~H~ 131 (300)
.+|+.+|++|+ .|.|++|++|+|+|.
T Consensus 10 ~~k~~lC~~f~-~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 10 PKKRELCKFYI-TGFCARAENCPYMHG 35 (98)
T ss_dssp SCCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred CCCCccCcccc-cCcCCCCCCCCCCCC
Confidence 46889999996 556999999999995
No 10
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.98 E-value=1.3e-10 Score=87.02 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=66.1
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEeccC
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~~ 249 (300)
..+..+.||..++|.|||++|.+|+.|++.|+++|.|.+......++.+.|.|+++++++|..+|..++.+..
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 5678899999999999999999999999999999999876555678999999999999999999999887655
No 11
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.98 E-value=7.7e-11 Score=86.36 Aligned_cols=74 Identities=24% Similarity=0.461 Sum_probs=65.1
Q ss_pred ccCcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEecc
Q 022221 175 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNV 248 (300)
Q Consensus 175 g~~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~ 248 (300)
+...+..+.||..++|.|||++|++|++|++.|+++|.|.+..+...++.+.|.|++++++.|..+|..++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 34567899999999999999999999999999999999987555667899999999999999999999887654
No 12
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.97 E-value=9.8e-11 Score=85.80 Aligned_cols=72 Identities=33% Similarity=0.454 Sum_probs=65.0
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEecc
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNV 248 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~ 248 (300)
..+..+.||+.++|.|||++|++|++|++.|+++|.|.+..++..++.+.|+|+++++++|..+|..++.+.
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999999999999999999999987655667899999999999999999998887654
No 13
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.96 E-value=9.3e-11 Score=90.05 Aligned_cols=75 Identities=17% Similarity=0.361 Sum_probs=65.0
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEeccCCC
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGSG 251 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~~~~ 251 (300)
..+..+.||+.+++.|||++|++|++|++.|+++|+|.+......++.++|+|+++++++|..+|.+++.+.+..
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSG 84 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhccccC
Confidence 457899999999999999999999999999999999976555566789999999999999999999998776643
No 14
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1.5e-10 Score=87.45 Aligned_cols=65 Identities=25% Similarity=0.515 Sum_probs=49.7
Q ss_pred ccccccccccccccccCCCC-CCCCCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 022221 37 GSKSKPCTKFFSTSGCPFGE-GCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKYN 115 (300)
Q Consensus 37 ~~Kt~lC~~y~~~g~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kt~~C~~~~ 115 (300)
..|..+|++| ..|.|..|| .|+|+|+....+.. ....+..+|.+|+
T Consensus 17 ~~k~~VCr~F-lrG~C~rgd~~C~FsH~~~~~~~~--------------------------------~~~~~~~vC~~fl 63 (98)
T 2e5s_A 17 TDKLEVCREF-QRGNCARGETDCRFAHPADSTMID--------------------------------TSDNTVTVCMDYI 63 (98)
T ss_dssp SSEEEBCSHH-HHTCCSSHHHHCSSBCCSSCCSCC--------------------------------TTTCEEEBCHHHH
T ss_pred hhhhhhhHHH-hcCcCCCCCCCCCCcCCchhcccc--------------------------------ccCCccccchhhc
Confidence 3588899666 459999999 79999987543210 1234677899999
Q ss_pred cCcCCCCCCCCccCCCccccC
Q 022221 116 SAEGCKFGDKCHFAHGEWELG 136 (300)
Q Consensus 116 ~~~~C~~g~~C~f~H~~~~~~ 136 (300)
++. |.++ .|+|.|...+|.
T Consensus 64 kG~-C~r~-~C~y~H~~~~l~ 82 (98)
T 2e5s_A 64 KGR-CMRE-KCKYFHPPAHLQ 82 (98)
T ss_dssp HTC-CCCT-TCCSBCCCHHHH
T ss_pred cCC-CCCC-CcCccCChHHHH
Confidence 976 9999 999999987665
No 15
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.94 E-value=9.3e-11 Score=84.64 Aligned_cols=70 Identities=21% Similarity=0.433 Sum_probs=63.2
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEe
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIV 246 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~ 246 (300)
..+..+.||..++|.|||++|.+|+.|++.||++|.|.+..+...++.+.|.|++++++.|..+|..++.
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLS 73 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999876666778999999999999999999987764
No 16
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.91 E-value=3.8e-10 Score=80.03 Aligned_cols=30 Identities=23% Similarity=0.682 Sum_probs=27.3
Q ss_pred cccccccccccccccCCCCCcCCCCcchhcc
Q 022221 267 FKTKLCENFAKGSCTFGDRCHFAHGSEELRK 297 (300)
Q Consensus 267 ykt~~C~~~~~G~C~~G~~C~faH~~~el~~ 297 (300)
.++.+|.+|++|.|.+| +|+|.|...+|+.
T Consensus 40 ~~~~vC~~flkG~C~r~-~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 40 NTVTVCMDYIKGRCSRE-KCKYFHPPAHLQA 69 (70)
T ss_dssp TEEEBCHHHHTTCCCCT-TCCSBCCCHHHHC
T ss_pred CcceeccccCcCCCCCC-CcCeeCCHHHHhc
Confidence 46678999999999999 9999999999974
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.89 E-value=6.5e-10 Score=85.56 Aligned_cols=71 Identities=31% Similarity=0.416 Sum_probs=63.3
Q ss_pred ceEEEeCccccceeccCCCccccchhcccCCeeEeccCC---CCCCccceeecCcHHHHHHHhhcceeeEeccC
Q 022221 179 TAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE---VDPNLRNIELEGTFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 179 t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~---~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~~ 249 (300)
+.++.||..++|.|||++|++|++|++.|+++|+|.+.. .+..++.+.|.|+++++++|..+|.+++.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999997642 23467999999999999999999999987644
No 18
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.88 E-value=5.5e-10 Score=79.57 Aligned_cols=28 Identities=32% Similarity=0.688 Sum_probs=23.6
Q ss_pred CccccccccccccCcCCCCCCCCccCCCc
Q 022221 104 PAVKSRLCNKYNSAEGCKFGDKCHFAHGE 132 (300)
Q Consensus 104 ~~~kt~~C~~~~~~~~C~~g~~C~f~H~~ 132 (300)
...++.+|+||+.+ .|++|+.|.|+|..
T Consensus 12 ~~~k~~vCk~fl~G-~C~~G~~C~fsH~~ 39 (72)
T 2rhk_C 12 SGEKTVVCKHWLRG-LCKKGDQCEFLHEY 39 (72)
T ss_dssp SCCCCSBCHHHHTT-CCCCGGGSSSBCSC
T ss_pred CCCcCeeCHHHhcC-CCCCCCCCCCcccc
Confidence 35578899999995 59999999999964
No 19
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.86 E-value=2.1e-10 Score=85.32 Aligned_cols=72 Identities=33% Similarity=0.454 Sum_probs=65.0
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEecc
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNV 248 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~ 248 (300)
..+.++.||..++|.|||++|.+|++|++.|+++|+|.+..++..++.+.|+|+++++++|..+|.+++.+.
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999999999999999999999987656677899999999999999999998887654
No 20
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.85 E-value=4.9e-10 Score=80.76 Aligned_cols=69 Identities=22% Similarity=0.399 Sum_probs=60.6
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCC---CCCCccceeecCcHHHHHHHhhcceeeEe
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE---VDPNLRNIELEGTFDQIKQASAMVRELIV 246 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~---~~~~~~~~~i~G~~~qi~~A~~~I~~~l~ 246 (300)
.+..+.||...+|.|||++|.+|+.|++.|+++|.|.+.. +...++.+.|.|+++++..|..+|..++.
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999997532 34567999999999999999999987764
No 21
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.83 E-value=1.1e-09 Score=82.28 Aligned_cols=73 Identities=32% Similarity=0.413 Sum_probs=64.7
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCC--CCCccceeecCcHHHHHHHhhcceeeEeccC
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEV--DPNLRNIELEGTFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~--~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~~ 249 (300)
..+.++.||+.++|.|||++|.+|++|++.|+++|.|.+... ...++.+.|.|++++++.|..+|..++.+.+
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 14 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred cEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 567889999999999999999999999999999999976432 3467999999999999999999999987654
No 22
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=1e-09 Score=80.38 Aligned_cols=69 Identities=14% Similarity=0.272 Sum_probs=60.1
Q ss_pred cCcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEec
Q 022221 176 ASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVN 247 (300)
Q Consensus 176 ~~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~ 247 (300)
...+..+.||..++|+|||++|++|++|++.|+++|+|.... .++.+.|+|+++++++|..+|.+.+..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~---~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD---KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS---SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC---CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 356788999999999999999999999999999999996432 246799999999999999999986543
No 23
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.78 E-value=5.7e-10 Score=79.85 Aligned_cols=67 Identities=30% Similarity=0.427 Sum_probs=59.9
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEe
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIV 246 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~ 246 (300)
.+.++.||+..+|.|||++|.+|+.|++.||++|.|.+. +..++.+.|.|+++++..|..+|.+.+.
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999764 3567899999999999999999877654
No 24
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.77 E-value=8.5e-10 Score=81.67 Aligned_cols=70 Identities=23% Similarity=0.394 Sum_probs=61.9
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCC---CCCCccceeecCcHHHHHHHhhcceeeEec
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE---VDPNLRNIELEGTFDQIKQASAMVRELIVN 247 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~---~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~ 247 (300)
.+..+.||..++|.|||++|.+|+.|+..||++|.|.+.. +...++.+.|.|+++++..|..+|..++.+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999997542 345679999999999999999999888754
No 25
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.75 E-value=1.8e-09 Score=79.58 Aligned_cols=69 Identities=26% Similarity=0.364 Sum_probs=60.1
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCC--CCCccceeecCcHHHHHHHhhcceeeE
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEV--DPNLRNIELEGTFDQIKQASAMVRELI 245 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~--~~~~~~~~i~G~~~qi~~A~~~I~~~l 245 (300)
.....+.||+..+|.|||++|++|+.|++.|+++|.|.+... ...++.+.|.|+++++..|..+|..++
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 83 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999976432 456788999999999999999987664
No 26
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.8e-09 Score=80.39 Aligned_cols=30 Identities=23% Similarity=0.659 Sum_probs=26.5
Q ss_pred cccccccccccccccCCCCCcCCCCcchhcc
Q 022221 267 FKTKLCENFAKGSCTFGDRCHFAHGSEELRK 297 (300)
Q Consensus 267 ykt~~C~~~~~G~C~~G~~C~faH~~~el~~ 297 (300)
.++.+|.+|++|.|.++ +|+|.|...+|+.
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHPPAHLQA 83 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCCCHHHHH
T ss_pred CccccchhhccCCCCCC-CcCccCChHHHHH
Confidence 45568999999999999 9999999988864
No 27
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=3.5e-09 Score=73.52 Aligned_cols=33 Identities=36% Similarity=0.796 Sum_probs=28.1
Q ss_pred CccccccccccccCcCCCCCCCCccCCCccccCC
Q 022221 104 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGR 137 (300)
Q Consensus 104 ~~~kt~~C~~~~~~~~C~~g~~C~f~H~~~~~~~ 137 (300)
+..|++||.+|.++ .|+||++|.|||+++||+.
T Consensus 16 P~~k~~LC~~~~~G-~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 16 PTGYFSICDRYMNG-TCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSCCSBCHHHHHS-CCSSCSSCSSBSSHHHHHH
T ss_pred CCCCcccCcccCcC-CCCCCCccCCcCCHHHHhh
Confidence 34467999999655 6999999999999999985
No 28
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.63 E-value=1.5e-08 Score=74.04 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=47.7
Q ss_pred CccccccccccccccccCCCC-CCCCCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 022221 36 IGSKSKPCTKFFSTSGCPFGE-GCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKY 114 (300)
Q Consensus 36 ~~~Kt~lC~~y~~~g~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kt~~C~~~ 114 (300)
-+.|..+|+.|.+ |.|..|| .|+|+|...... + ...+...|.+|
T Consensus 5 ~~~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~--~--------------------------------~~~~~~vC~df 49 (83)
T 3d2n_A 5 KWLTLEVCREFQR-GTCSRPDTECKFAHPSKSCQ--V--------------------------------ENGRVIACFDS 49 (83)
T ss_dssp GGGEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCC--E--------------------------------ETTEEECCHHH
T ss_pred ccccchhcHHHhc-CCCCCCCCCCCCcCCCcccc--c--------------------------------cCCceeehhHh
Confidence 4678889966654 9999997 999999864320 0 01234569999
Q ss_pred ccCcCCCCCCCCccCCCccccC
Q 022221 115 NSAEGCKFGDKCHFAHGEWELG 136 (300)
Q Consensus 115 ~~~~~C~~g~~C~f~H~~~~~~ 136 (300)
+++. |..+ .|+|.|....|.
T Consensus 50 lkG~-C~r~-~C~y~H~~~~l~ 69 (83)
T 3d2n_A 50 LKGR-CSRE-NCKYLHPPPHLK 69 (83)
T ss_dssp HTTC-CCCS-SCSSCCCCHHHH
T ss_pred hhcc-ccCC-CcceeCChHHHH
Confidence 9876 9998 999999876554
No 29
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.62 E-value=4.6e-09 Score=80.36 Aligned_cols=70 Identities=24% Similarity=0.448 Sum_probs=61.2
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCC--CCccceeecCcHHHHHHHhhcceeeEec
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVD--PNLRNIELEGTFDQIKQASAMVRELIVN 247 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~--~~~~~~~i~G~~~qi~~A~~~I~~~l~~ 247 (300)
.+..+.||..++|.|||++|.+|++|++.|+++|.|.+.... ..++.+.|.|+++++++|..+|..++.+
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999999764322 3578999999999999999999888744
No 30
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.48 E-value=3.3e-08 Score=70.17 Aligned_cols=66 Identities=27% Similarity=0.335 Sum_probs=57.4
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceee
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVREL 244 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~ 244 (300)
..+..+.||+.+++.|||++|.+|+.|++.|+++|.+.+.. ...+.+.|.|..+.++.|..+|..+
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g--~~~~~V~I~G~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS--EKSNLIRIEGDPQGVQQAKRELLEL 69 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC--SSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC--CcccEEEEEcCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999996643 2457899999999999999888654
No 31
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.47 E-value=4e-08 Score=74.09 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=61.4
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCC-CCCCccceeecCcHHHHHHHhhcceeeEec
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE-VDPNLRNIELEGTFDQIKQASAMVRELIVN 247 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~-~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~ 247 (300)
..+..+.||+.+++.|||++|.+|+.|+..|+++|.|.+.. +....+.+.|.|..+++..|..+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999996543 223568899999999999999999877654
No 32
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.40 E-value=4.3e-08 Score=73.49 Aligned_cols=71 Identities=24% Similarity=0.297 Sum_probs=61.2
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEeccC
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~~ 249 (300)
..+..+.||...+|.|||++|.+|+.|+..|+++|.|.+.. .....+.|.|.++++.+|..+|..++.+..
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~--~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD--DPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT--SSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC--CCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 45788999999999999999999999999999999996532 234689999999999999999988876544
No 33
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.39 E-value=1.6e-07 Score=69.29 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=46.7
Q ss_pred CccccccccccccccccCCCC-CCCCCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 022221 36 IGSKSKPCTKFFSTSGCPFGE-GCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKY 114 (300)
Q Consensus 36 ~~~Kt~lC~~y~~~g~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kt~~C~~~ 114 (300)
-+-+..+|+.|. .|.|..|| .|+|+|...... + ..-+...|..|
T Consensus 13 ~~~~~~VCrdFl-rG~C~r~d~~CrfsH~~~~~~--v--------------------------------~~~~~~vC~df 57 (89)
T 2rpp_A 13 KWLTLEVCRQFQ-RGTCSRSDEECKFAHPPKSCQ--V--------------------------------ENGRVIACFDS 57 (89)
T ss_dssp SSSEECBCHHHH-HTCCCCCTTTSSSBCCCSSSC--C--------------------------------BTTBEEBCHHH
T ss_pred CcchhhhchHHh-cCCCCCCCCCCCCcCCCcccc--c--------------------------------cCCceeeehhh
Confidence 345778997775 59999998 999999764310 0 01134569999
Q ss_pred ccCcCCCCCCCCccCCCccccC
Q 022221 115 NSAEGCKFGDKCHFAHGEWELG 136 (300)
Q Consensus 115 ~~~~~C~~g~~C~f~H~~~~~~ 136 (300)
+++. |..+ .|+|.|....|.
T Consensus 58 lkG~-C~r~-~Cky~H~~~hl~ 77 (89)
T 2rpp_A 58 LKGR-CSRE-NCKYLHPPTHLK 77 (89)
T ss_dssp HHTC-CCCT-TCCSBCCCHHHH
T ss_pred hhCc-CCCC-CcceecCHHHHH
Confidence 9876 9998 999999876544
No 34
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.37 E-value=3.9e-08 Score=81.93 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=64.6
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEeccC
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~~ 249 (300)
+.+.++.||..++|.|||++|.+|+.|+..|+++|.|.+......++.+.|.|+++++.+|..+|.+++.+..
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~ 74 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQ 74 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 4568899999999999999999999999999999999765555667899999999999999999988886654
No 35
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.34 E-value=1.1e-07 Score=71.43 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=62.5
Q ss_pred cCcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEeccC
Q 022221 176 ASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 176 ~~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~~ 249 (300)
...+..+.||+.+++.|||++|.+|+.|+..|+++|.+.+.. +.+.+.+.|.|.+++++.|..+|..++.+..
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-APDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-CSCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999996532 2345789999999999999999988776544
No 36
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.34 E-value=7.2e-08 Score=79.35 Aligned_cols=70 Identities=16% Similarity=0.339 Sum_probs=62.3
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEec
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVN 247 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~ 247 (300)
.+..+.||..++|.|||++|.+|+.|+..|+++|.|.+......++.+.|.|+++++..|..+|..++.+
T Consensus 91 ~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 91 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp SSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhh
Confidence 3578899999999999999999999999999999997765555679999999999999999999887654
No 37
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.31 E-value=2.1e-07 Score=67.89 Aligned_cols=28 Identities=25% Similarity=0.583 Sum_probs=24.4
Q ss_pred cccccccccccccCCCCCcCCCCcchhcc
Q 022221 269 TKLCENFAKGSCTFGDRCHFAHGSEELRK 297 (300)
Q Consensus 269 t~~C~~~~~G~C~~G~~C~faH~~~el~~ 297 (300)
...|.+|++|.|..+ +|+|.|....|..
T Consensus 43 ~~vC~dflkG~C~r~-~C~y~H~~~~l~~ 70 (83)
T 3d2n_A 43 VIACFDSLKGRCSRE-NCKYLHPPPHLKT 70 (83)
T ss_dssp EECCHHHHTTCCCCS-SCSSCCCCHHHHH
T ss_pred eeehhHhhhccccCC-CcceeCChHHHHH
Confidence 347999999999998 9999999887754
No 38
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.30 E-value=1.8e-07 Score=76.90 Aligned_cols=72 Identities=25% Similarity=0.328 Sum_probs=62.3
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCC--CCCCccceeecCcHHHHHHHhhcceeeEeccC
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE--VDPNLRNIELEGTFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~--~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~~ 249 (300)
.+.++.||+..+|.|||++|.+|+.|+..|+++|.+.+.. ....++.+.|.|+++++..|..+|..++.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999999999996432 34557899999999999999999988876544
No 39
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.29 E-value=1.4e-07 Score=78.57 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=59.1
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCC---CCCCccceeecCcHHHHHHHhhcceee
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE---VDPNLRNIELEGTFDQIKQASAMVREL 244 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~---~~~~~~~~~i~G~~~qi~~A~~~I~~~ 244 (300)
..+..+.||..++|.|||++|.+|++|++.|+++|.|.+.. .+..++.+.|.|+++++..|..+|.++
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEK 173 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHH
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999996542 235679999999999999999988764
No 40
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.27 E-value=1.2e-07 Score=79.24 Aligned_cols=71 Identities=25% Similarity=0.389 Sum_probs=61.8
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCC--CCCCccceeecCcHHHHHHHhhcceeeEec
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE--VDPNLRNIELEGTFDQIKQASAMVRELIVN 247 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~--~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~ 247 (300)
..+..+.||..++|.|||++|.+|++|++.|+++|.|.+.. ++..++.+.|.|+++++..|..+|.+++.+
T Consensus 103 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 103 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQE 175 (178)
T ss_dssp GGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred ceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999996543 345678999999999999999999887754
No 41
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.26 E-value=1.6e-07 Score=77.24 Aligned_cols=71 Identities=25% Similarity=0.358 Sum_probs=63.3
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccC-CCCCCccceeecCcHHHHHHHhhcceeeEecc
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDH-EVDPNLRNIELEGTFDQIKQASAMVRELIVNV 248 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~-~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~ 248 (300)
.+.++.||...+|+|||++|.+|+.|+..|+++|.+.+. .++..++.+.|.|+++++..|..+|.+.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEE 74 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999999999999999764 45677899999999999999999998877654
No 42
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.25 E-value=9.5e-08 Score=78.42 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=60.8
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEecc-CCCCCCccceeecCcHHHHHHHhhcceeeEe
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRD-HEVDPNLRNIELEGTFDQIKQASAMVRELIV 246 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~-~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~ 246 (300)
.+..+.||..++|.|||++|.+|++|++.|+++|.|.+ ..+...++.+.|.|+++++..|..+|.+++.
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVML 158 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999964 3345678999999999999999998876653
No 43
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.24 E-value=1.6e-07 Score=71.67 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=59.0
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEec
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVN 247 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~ 247 (300)
.+..+.||+.+++.|||++|.+|+.|+..|+++|.|.+... ....+.|.|.+++++.|..+|..++.+
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--QSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--TCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC--CcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 56889999999999999999999999999999999976432 235899999999999999998877644
No 44
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.24 E-value=1.5e-07 Score=77.49 Aligned_cols=72 Identities=25% Similarity=0.403 Sum_probs=61.6
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCC-CCCCc-cceeecCcHHHHHHHhhcceeeEeccC
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE-VDPNL-RNIELEGTFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~-~~~~~-~~~~i~G~~~qi~~A~~~I~~~l~~~~ 249 (300)
.+..+.||..++|.|||++|.+|+.|+..|+++|.+.+.. ++.+. +.+.|.|+++++..|..+|..++.+..
T Consensus 85 ~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 158 (163)
T 3krm_A 85 LETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQVK 158 (163)
T ss_dssp EEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999996532 33333 489999999999999999998887655
No 45
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.19 E-value=2.2e-07 Score=77.62 Aligned_cols=73 Identities=25% Similarity=0.361 Sum_probs=63.1
Q ss_pred cCcceEEEeCccccceeccCCCccccchhcccCCeeEeccCC---CCCCccceeecCcHHHHHHHhhcceeeEecc
Q 022221 176 ASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE---VDPNLRNIELEGTFDQIKQASAMVRELIVNV 248 (300)
Q Consensus 176 ~~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~---~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~ 248 (300)
+..+.++.||...+|.|||++|.+|+.|++.|+++|.|.+.. +...++.+.|.|+++++.+|..+|.+.+.+.
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 346788999999999999999999999999999999996532 3456789999999999999999988877554
No 46
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.06 E-value=4.7e-07 Score=73.18 Aligned_cols=68 Identities=25% Similarity=0.388 Sum_probs=56.3
Q ss_pred eEEEeCccccceeccCCCccccchhcccCC-eeEeccCC-CC-C-Cc--cceeecCcHHHHHHHhhcceeeEec
Q 022221 180 AKISIDAKLAGAIIGKNGVNSKQICRLTGA-KLSIRDHE-VD-P-NL--RNIELEGTFDQIKQASAMVRELIVN 247 (300)
Q Consensus 180 ~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga-~i~i~~~~-~~-~-~~--~~~~i~G~~~qi~~A~~~I~~~l~~ 247 (300)
..+.||...+|.+|||+|.+|+.+++.||+ +|.|.+.. .. + .+ ..++|+|++++++.|..+|.+.+.+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999997 89995432 11 1 12 3588999999999999999877654
No 47
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.03 E-value=1.9e-06 Score=63.56 Aligned_cols=28 Identities=25% Similarity=0.587 Sum_probs=24.2
Q ss_pred cccccccccccccCCCCCcCCCCcchhcc
Q 022221 269 TKLCENFAKGSCTFGDRCHFAHGSEELRK 297 (300)
Q Consensus 269 t~~C~~~~~G~C~~G~~C~faH~~~el~~ 297 (300)
...|.+|++|.|..+ +|+|.|....|+.
T Consensus 51 ~~vC~dflkG~C~r~-~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 51 VIACFDSLKGRCSRE-NCKYLHPPTHLKT 78 (89)
T ss_dssp EEBCHHHHHTCCCCT-TCCSBCCCHHHHH
T ss_pred eeeehhhhhCcCCCC-CcceecCHHHHHH
Confidence 346999999999998 9999999887754
No 48
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.97 E-value=3.5e-06 Score=62.23 Aligned_cols=71 Identities=18% Similarity=0.340 Sum_probs=59.8
Q ss_pred cccCcceEEEeCccccceeccCCCccccchhcccCCe-eEeccCCCCCCccceeecC-cHHHHHHHhhcceeeEeccC
Q 022221 174 FGASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAK-LSIRDHEVDPNLRNIELEG-TFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 174 ~g~~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~-i~i~~~~~~~~~~~~~i~G-~~~qi~~A~~~I~~~l~~~~ 249 (300)
..++....+.||+.+++.+||++|.+|+.|+..||++ |.|.+. +..+.|.| +.+++++|..+|..+-..+.
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed-----dG~V~I~g~~~ea~~~A~~~I~~ie~~~~ 83 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED-----TGTFRIYGESADAVKKARGFLEFVEDFIQ 83 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHSCCCCCCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC-----CCEEEEEECCHHHHHHHHHHHHhhheEEe
Confidence 3446678899999999999999999999999999998 999642 26788998 88999999999987765444
No 49
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.96 E-value=7.6e-07 Score=72.96 Aligned_cols=68 Identities=29% Similarity=0.426 Sum_probs=59.8
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEec
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVN 247 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~ 247 (300)
.+.++.||...+|.|||++|.+|+.|++.|+++|.+.+. ...++.+.|.|.++++..|..+|.+.+.+
T Consensus 5 ~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~e 72 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999999999999764 34578999999999999999988777654
No 50
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.87 E-value=8.1e-06 Score=69.55 Aligned_cols=21 Identities=33% Similarity=1.001 Sum_probs=18.8
Q ss_pred cccccccccccCCCCCcCCCCc
Q 022221 271 LCENFAKGSCTFGDRCHFAHGS 292 (300)
Q Consensus 271 ~C~~~~~G~C~~G~~C~faH~~ 292 (300)
+|++|.+|+|+| .+|+-+|..
T Consensus 177 IC~~Fl~G~C~f-~~CkRsH~~ 197 (229)
T 3u9g_A 177 ICEHFTRGNCSY-LNCLRSHNL 197 (229)
T ss_dssp SCHHHHTTCCCC-SSCSSCCCT
T ss_pred ccchhhcCCcCC-CCccCccCc
Confidence 599999999999 799999975
No 51
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.80 E-value=3.9e-06 Score=62.77 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=61.9
Q ss_pred cCcceEEEeCccccceeccCCCccccchhccc-CCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEeccC
Q 022221 176 ASATAKISIDAKLAGAIIGKNGVNSKQICRLT-GAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 176 ~~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~S-ga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~~ 249 (300)
...+..+.||+.+.+.|||++|.+|+.|+..+ +++|.+.+.. .....+.|.|....+++|..+|..++.+.+
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g--~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG--SGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT--TTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC--CCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 35678899999999999999999999999999 9999996533 345689999999999999999998876544
No 52
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.60 E-value=1.3e-05 Score=60.68 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=57.3
Q ss_pred cceEEEeCccccceeccCCCccccchhcc-cCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEeccC
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRL-TGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~-Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~~~~ 249 (300)
.+..+.||+.+.+.|||++|.+|+.|+.. +++.|.+.+ ....++|.|..+++.+|...|..++.+..
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999995 688888755 24689999999999999999887775533
No 53
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.23 E-value=0.00014 Score=46.59 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=26.6
Q ss_pred ccccccccccccccccCCCCCCCCCCCCC
Q 022221 37 GSKSKPCTKFFSTSGCPFGEGCHFLHYVP 65 (300)
Q Consensus 37 ~~Kt~lC~~y~~~g~C~~G~~C~F~H~~~ 65 (300)
..++.+|.+|..-|.|++|..|.|.|++.
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 36899999999999999999999999873
No 54
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.12 E-value=0.00012 Score=57.80 Aligned_cols=70 Identities=23% Similarity=0.381 Sum_probs=54.4
Q ss_pred cceEEEeCcc------ccceeccCCCccccchhcccCCeeEeccCCC----------------CCCccceeecC-cHHHH
Q 022221 178 ATAKISIDAK------LAGAIIGKNGVNSKQICRLTGAKLSIRDHEV----------------DPNLRNIELEG-TFDQI 234 (300)
Q Consensus 178 ~t~~~~iP~~------~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~----------------~~~~~~~~i~G-~~~qi 234 (300)
.+.++.||.. .+|.|||.+|.+|+.|+..||++|.|....+ ....-.+.|++ +.+.+
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~ 86 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENV 86 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHH
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHH
Confidence 4577888877 8899999999999999999999999965221 01123455666 67889
Q ss_pred HHHhhcceeeEec
Q 022221 235 KQASAMVRELIVN 247 (300)
Q Consensus 235 ~~A~~~I~~~l~~ 247 (300)
++|..+|..++..
T Consensus 87 ~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 87 KKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998854
No 55
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=97.10 E-value=0.00017 Score=66.57 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=59.3
Q ss_pred ccCcceEEEeCccccceeccCCC--ccccchhcccCCeeEeccCC-----CCCCccceeecCcHHHHHHHhhcceee
Q 022221 175 GASATAKISIDAKLAGAIIGKNG--VNSKQICRLTGAKLSIRDHE-----VDPNLRNIELEGTFDQIKQASAMVREL 244 (300)
Q Consensus 175 g~~~t~~~~iP~~~~G~iiG~gG--~~ik~i~~~Sga~i~i~~~~-----~~~~~~~~~i~G~~~qi~~A~~~I~~~ 244 (300)
....|.++.||......|||++| ++|+.|.+.|+++|++-+.. .......++|+|..+.+++|...|..+
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 34678899999999999999999 99999999999999995543 123456899999999999999888653
No 56
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=9e-05 Score=57.55 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=52.2
Q ss_pred cceEEEeCcc-------ccceeccCCCccccchhcccCCeeEeccCCC---------CC-Cccceeec-CcHHHHHHHhh
Q 022221 178 ATAKISIDAK-------LAGAIIGKNGVNSKQICRLTGAKLSIRDHEV---------DP-NLRNIELE-GTFDQIKQASA 239 (300)
Q Consensus 178 ~t~~~~iP~~-------~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~---------~~-~~~~~~i~-G~~~qi~~A~~ 239 (300)
.+.++.||.. .+|.|||.+|.+|+.|+..||++|.|....+ .. ..-.+.|. .+++.+++|..
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 3456777644 6678999999999999999999999964321 01 12245555 47889999999
Q ss_pred cceeeEecc
Q 022221 240 MVRELIVNV 248 (300)
Q Consensus 240 ~I~~~l~~~ 248 (300)
+|.+++...
T Consensus 92 ~Ie~Ll~~v 100 (119)
T 2yqr_A 92 LCENLLQTV 100 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhch
Confidence 999887543
No 57
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.01 E-value=0.00032 Score=55.06 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=57.9
Q ss_pred ceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeE
Q 022221 179 TAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELI 245 (300)
Q Consensus 179 t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l 245 (300)
...+.+.+.++++|||++|+.|+.|+..|.+.|+|..-++ ++...+.|.|++...+.+..+|..+.
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~~Q~rak~MI~sLA 122 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPPFRRDVDRMLTDLA 122 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999976654 46788999999999988888887654
No 58
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.47 E-value=0.00044 Score=59.44 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=52.3
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeec-----CcHHHHHHHhhcceeeE
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELE-----GTFDQIKQASAMVRELI 245 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~-----G~~~qi~~A~~~I~~~l 245 (300)
....+.||+..+|.|||++|..|+.|+..++++|.|...+ ..+.|. |++.++++|.++|..+.
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~-----g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSET-----GEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTT-----CEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCC-----CEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999996322 334444 45799999999998765
No 59
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.37 E-value=0.00034 Score=60.16 Aligned_cols=53 Identities=26% Similarity=0.459 Sum_probs=47.9
Q ss_pred cccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEe
Q 022221 187 KLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIV 246 (300)
Q Consensus 187 ~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~ 246 (300)
..+|.|||++|.+++.|+..|+++|.|.+ +.+.|.|++++++.|..+|..++.
T Consensus 138 r~~GriIGk~G~tik~ie~~Tg~~I~v~~-------~~v~i~G~~~~i~~A~~~i~~li~ 190 (219)
T 2e3u_A 138 RVRGRIIGRKGRTRQIIEEMSGASVSVYG-------KTVAIIGNPIQIEIAKTAIEKLAR 190 (219)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEEET-------TEEEEEECHHHHHHHHHHHHHHHT
T ss_pred hhhheeECCCchHHHHHHHHhCceEEECC-------eEEEEEeCHHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999964 458999999999999999988873
No 60
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.31 E-value=0.00054 Score=54.57 Aligned_cols=70 Identities=26% Similarity=0.370 Sum_probs=49.6
Q ss_pred ceEEEeCccc------cceeccCCCccccchhcccCCeeEeccCCCC-----------------CCc-cceeecC-cHH-
Q 022221 179 TAKISIDAKL------AGAIIGKNGVNSKQICRLTGAKLSIRDHEVD-----------------PNL-RNIELEG-TFD- 232 (300)
Q Consensus 179 t~~~~iP~~~------~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~-----------------~~~-~~~~i~G-~~~- 232 (300)
+.++.||... +|.|||.+|.+++.|+..||++|.|+...+. ..+ =-+.|++ ++.
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 3566776443 7899999999999999999999999753321 001 1344555 332
Q ss_pred ----HHHHHhhcceeeEecc
Q 022221 233 ----QIKQASAMVRELIVNV 248 (300)
Q Consensus 233 ----qi~~A~~~I~~~l~~~ 248 (300)
.+++|..+|..++...
T Consensus 83 ~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHSSCC
T ss_pred hHHHHHHHHHHHHHHHCCCC
Confidence 6788999999888643
No 61
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.30 E-value=0.0019 Score=54.99 Aligned_cols=43 Identities=21% Similarity=0.664 Sum_probs=37.4
Q ss_pred cccccccccc----cccCCCCCCCCCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 022221 40 SKPCTKFFST----SGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKYN 115 (300)
Q Consensus 40 t~lC~~y~~~----g~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kt~~C~~~~ 115 (300)
-++|..| ++ |.|.+++.|...| +|.+|+
T Consensus 151 PeiC~~Y-kG~g~~g~C~~~~~C~kLH-----------------------------------------------IC~~Fl 182 (229)
T 3u9g_A 151 PEICKSY-KGEGRKQTCGQPQPCERLH-----------------------------------------------ICEHFT 182 (229)
T ss_dssp CCBCTTC-CCSSSCCSCSSSSCCCSBC-----------------------------------------------SCHHHH
T ss_pred chHHHHh-CCCCCCCcCCCCCCCccee-----------------------------------------------ccchhh
Confidence 5689777 64 6899999999999 499998
Q ss_pred cCcCCCCCCCCccCCCc
Q 022221 116 SAEGCKFGDKCHFAHGE 132 (300)
Q Consensus 116 ~~~~C~~g~~C~f~H~~ 132 (300)
.+. |+| ..|+-.|.-
T Consensus 183 ~G~-C~f-~~CkRsH~~ 197 (229)
T 3u9g_A 183 RGN-CSY-LNCLRSHNL 197 (229)
T ss_dssp TTC-CCC-SSCSSCCCT
T ss_pred cCC-cCC-CCccCccCc
Confidence 887 999 899999975
No 62
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.26 E-value=0.0017 Score=41.59 Aligned_cols=28 Identities=32% Similarity=0.780 Sum_probs=25.3
Q ss_pred Ccccccccccc-cccccCCCCCcCCCCcc
Q 022221 266 NFKTKLCENFA-KGSCTFGDRCHFAHGSE 293 (300)
Q Consensus 266 ~ykt~~C~~~~-~G~C~~G~~C~faH~~~ 293 (300)
..++.+|..|. -|.|++|..|.|.|..+
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 47899999998 79999999999999765
No 63
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=96.11 E-value=0.0014 Score=64.72 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=51.4
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecC-cHHHHHHHhhcceeeE
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEG-TFDQIKQASAMVRELI 245 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G-~~~qi~~A~~~I~~~l 245 (300)
....+.||+..++.|||+||++|+.|+..||++|.|.+. ..+.|.+ +.+..++|..+|..++
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~------G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE------ETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS------SEEEEEESSHHHHHHHHHHTTC--
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCC------cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999752 4677776 4577899999887764
No 64
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=96.01 E-value=0.0013 Score=55.23 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=52.6
Q ss_pred eEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeec-----CcHHHHHHHhhcceeeEe
Q 022221 180 AKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELE-----GTFDQIKQASAMVRELIV 246 (300)
Q Consensus 180 ~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~-----G~~~qi~~A~~~I~~~l~ 246 (300)
..+.||+..+|+|||++|+.++.|+..+++++.++.. ++.++|. |++..+.+|.++|..+..
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~-----~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE-----NSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT-----TTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC-----CCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999999999653 3445555 899999999999966543
No 65
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=95.97 E-value=0.0025 Score=58.85 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=54.5
Q ss_pred CcceEEEeCccccceeccCCCccc--cchhcccCCeeEeccCC--CC--CCccceeecCcHHHHHHHhhcceeeE
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNS--KQICRLTGAKLSIRDHE--VD--PNLRNIELEGTFDQIKQASAMVRELI 245 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~i--k~i~~~Sga~i~i~~~~--~~--~~~~~~~i~G~~~qi~~A~~~I~~~l 245 (300)
+.+..+.|++.....|||++|.++ +.|++.||++|.+-+.. .+ .....++|+|..+++..|...|.++|
T Consensus 185 ~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 185 NFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp CEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred ceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 456788999999999999999655 99999999999985432 11 23468999999999999998887664
No 66
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.79 E-value=0.0036 Score=50.14 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=43.1
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhh
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASA 239 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~ 239 (300)
+.+.++.||...+|++||++|++|+.+++.++ |.+.....+ ....+...+++..+..+..
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~-~~~~i~~~~~p~~v~~~~~ 62 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDED-TCTFHIYGEDQDAVKKARS 62 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEETT-TTEEEEEESSHHHHHHHHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCCC-chheeeccCCHHHHHHHHH
Confidence 34688999999999999999999999999999 554322112 2234444457888877743
No 67
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=95.57 E-value=0.001 Score=55.83 Aligned_cols=53 Identities=19% Similarity=0.427 Sum_probs=47.5
Q ss_pred cccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecCcHHHHHHHhhcceeeEe
Q 022221 187 KLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIV 246 (300)
Q Consensus 187 ~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G~~~qi~~A~~~I~~~l~ 246 (300)
.+.|.|||++|.+++.|+..|++.|.|.+. .+.|.|++++++.|...|..++.
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-------~v~i~G~~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGEY-------EVAIIGDYERAMAAKQAIEMLAE 159 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECSS-------EEEEEEEHHHHHHHHHHHHHHHT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcCC-------EEEEEeChHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999753 68999999999999988888874
No 68
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.64 E-value=0.011 Score=51.35 Aligned_cols=22 Identities=41% Similarity=0.970 Sum_probs=20.8
Q ss_pred ccccccccccccCCCCCcCCCC
Q 022221 270 KLCENFAKGSCTFGDRCHFAHG 291 (300)
Q Consensus 270 ~~C~~~~~G~C~~G~~C~faH~ 291 (300)
.+|.||.+|.|++|+.|.|.|.
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHH 92 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBS
T ss_pred eEcCccccCCCCCCCCCCccCC
Confidence 4899999999999999999996
No 69
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=93.64 E-value=0.02 Score=57.22 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=10.1
Q ss_pred ceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecC-cHHHHHHHhhcceeeEeccC
Q 022221 179 TAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEG-TFDQIKQASAMVRELIVNVG 249 (300)
Q Consensus 179 t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G-~~~qi~~A~~~I~~~l~~~~ 249 (300)
...+.||+..++.|||+||.+|+.|+..||++|.|.+. ..+.|.+ +...+++|...|..++....
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd------G~v~I~~~~~~~~~~A~~~i~~i~~~~~ 636 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD------GVVKVSASDGAKIKAAIDWIKSITDEAE 636 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC---------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC------ceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 46688999999999999999999999999999999653 2445555 56778888888888875433
No 70
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.63 E-value=0.04 Score=47.78 Aligned_cols=27 Identities=30% Similarity=0.654 Sum_probs=21.9
Q ss_pred cccccccccccccCCCCCCCCCCCCCCC
Q 022221 40 SKPCTKFFSTSGCPFGEGCHFLHYVPGG 67 (300)
Q Consensus 40 t~lC~~y~~~g~C~~G~~C~F~H~~~~~ 67 (300)
..+|.+| .-|.|+.|+.|.|.|.+|..
T Consensus 70 ~~~C~ff-akG~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 70 LFFCLFF-AKGMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp CSBCHHH-HTTCCSCGGGCSSBBSCCCH
T ss_pred CeEcCcc-ccCCCCCCCCCCccCCCCCc
Confidence 3489555 55999999999999998753
No 71
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=88.03 E-value=0.091 Score=37.44 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=15.3
Q ss_pred cccccccccccccCCCCCCCCCCCC
Q 022221 40 SKPCTKFFSTSGCPFGEGCHFLHYV 64 (300)
Q Consensus 40 t~lC~~y~~~g~C~~G~~C~F~H~~ 64 (300)
.++| +|. -.|+. +.|.|.|..
T Consensus 9 ~e~C-Kf~--~~Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 9 LEQC-KFG--THCTN-KRCKYRHAR 29 (80)
Confidence 4568 553 47888 899999954
No 72
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=84.55 E-value=0.2 Score=35.64 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=14.3
Q ss_pred cccccccCcCCCCCCCCccCCCc
Q 022221 110 LCNKYNSAEGCKFGDKCHFAHGE 132 (300)
Q Consensus 110 ~C~~~~~~~~C~~g~~C~f~H~~ 132 (300)
+|+|+. .|.+ ..|.|.|.+
T Consensus 54 ~Crf~~---~C~n-~~C~F~Hp~ 72 (80)
T 2lhn_A 54 DCRFGV---NCKN-IYCLFRHPP 72 (80)
Confidence 487753 3888 789999965
No 73
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=82.31 E-value=0.26 Score=41.98 Aligned_cols=28 Identities=25% Similarity=0.602 Sum_probs=0.0
Q ss_pred CcccccccccccccccCCCCCcCCCCcchh
Q 022221 266 NFKTKLCENFAKGSCTFGDRCHFAHGSEEL 295 (300)
Q Consensus 266 ~ykt~~C~~~~~G~C~~G~~C~faH~~~el 295 (300)
..+.++|+|-. .|-||.+|+|.|++.--
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 216 (223)
T 3v33_A 189 EHRKQPCPYGR--KCTYGIKCRFFHPERPS 216 (223)
T ss_dssp ------------------------------
T ss_pred ccCCCCCCCCc--ccccCCcceecCCccCC
Confidence 34678899953 89999999999998643
No 74
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=81.99 E-value=0.27 Score=41.86 Aligned_cols=24 Identities=29% Similarity=0.928 Sum_probs=0.0
Q ss_pred cccccccccccccccCCCCCCCCCCCC
Q 022221 38 SKSKPCTKFFSTSGCPFGEGCHFLHYV 64 (300)
Q Consensus 38 ~Kt~lC~~y~~~g~C~~G~~C~F~H~~ 64 (300)
.|..+| -| +.+|+||.+|+|.|..
T Consensus 190 ~~~~~~-~~--~~~~~~~~~~~~~~~~ 213 (223)
T 3v33_A 190 HRKQPC-PY--GRKCTYGIKCRFFHPE 213 (223)
T ss_dssp ---------------------------
T ss_pred cCCCCC-CC--CcccccCCcceecCCc
Confidence 467789 66 5799999999999964
No 75
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=70.50 E-value=0.88 Score=45.54 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=0.0
Q ss_pred ceEEEeCccccceeccCCCccccchhcccCCeeEeccCCCCCCccceeecC-cHHHHHHHhhcceeeE
Q 022221 179 TAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEG-TFDQIKQASAMVRELI 245 (300)
Q Consensus 179 t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~~~~~~~~~~i~G-~~~qi~~A~~~I~~~l 245 (300)
...+.||+..++.+||++|.+|+.|...+|+.|.|.+. ..+.|.+ +......|...|..++
T Consensus 561 ~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~d------g~v~I~~~~~~~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 561 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD------GTVKIAATDGEKAKHAIRRIEEIT 622 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred EEEEEECHHHhcccccccceeeeeeehhhCceEEecCC------ccEEEecCCHHHHHHHHHHHHHHh
Confidence 45578899999999999999999999999999888652 2333433 2334445555444443
No 76
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=65.21 E-value=1.4 Score=44.22 Aligned_cols=37 Identities=30% Similarity=0.402 Sum_probs=13.1
Q ss_pred ceEEEeCccccceeccCCCccccchhcccCCeeEecc
Q 022221 179 TAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRD 215 (300)
Q Consensus 179 t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~ 215 (300)
...+.||+..++.+||++|..|+.|...+|+.|.|.+
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~ 635 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED 635 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC----
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC
Confidence 3567899999999999999999999999999998864
No 77
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=57.84 E-value=3.4 Score=29.67 Aligned_cols=8 Identities=38% Similarity=1.302 Sum_probs=0.0
Q ss_pred CCCCCCCc
Q 022221 120 CKFGDKCH 127 (300)
Q Consensus 120 C~~g~~C~ 127 (300)
|+||..|-
T Consensus 59 C~YG~~CY 66 (89)
T 2kqb_A 59 CPYGPSCY 66 (89)
T ss_dssp --------
T ss_pred CCCchhhh
Confidence 99999995
No 78
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=50.78 E-value=3.1 Score=32.87 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=34.3
Q ss_pred cceEEEeCccccceeccCCCccccchhcccCCeeEeccCC
Q 022221 178 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE 217 (300)
Q Consensus 178 ~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~~ 217 (300)
..+.+.++...+|+.||++|++|+.++...|.+|.|....
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s 75 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS 75 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECC
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcC
Confidence 3466788888999999999999999999999999885544
No 79
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=47.95 E-value=4.5 Score=34.93 Aligned_cols=40 Identities=30% Similarity=0.481 Sum_probs=35.9
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccC
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDH 216 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~ 216 (300)
.....+.+|....++.|||+|.|++.....|+.+|.|.+.
T Consensus 183 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 183 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred CcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 3567889999999999999999999999999999999654
No 80
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=41.42 E-value=2.2 Score=33.71 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=33.7
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEecc
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRD 215 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~ 215 (300)
.....+.+|....+..||++|.+++-....++.++.|.+
T Consensus 102 ~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 102 VKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp EEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred cEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 456678899999999999999999999999998877643
No 81
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=37.87 E-value=8.3 Score=35.19 Aligned_cols=40 Identities=30% Similarity=0.481 Sum_probs=35.9
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccC
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDH 216 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~ 216 (300)
.....+.||....+..|||+|.|++-....||.+|.|...
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 4567788999999999999999999999999999999654
No 82
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=37.85 E-value=8 Score=35.02 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=35.9
Q ss_pred CcceEEEeCccccceeccCCCccccchhcccCCeeEeccC
Q 022221 177 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDH 216 (300)
Q Consensus 177 ~~t~~~~iP~~~~G~iiG~gG~~ik~i~~~Sga~i~i~~~ 216 (300)
.....+.+|....++.|||+|.|++.....|+.+|.|.+.
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 4577889999999999999999999999999999998653
No 83
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=23.45 E-value=16 Score=19.43 Aligned_cols=14 Identities=57% Similarity=1.395 Sum_probs=10.3
Q ss_pred ccccccccccCCCCCc
Q 022221 272 CENFAKGSCTFGDRCH 287 (300)
Q Consensus 272 C~~~~~G~C~~G~~C~ 287 (300)
|.+|-+|+| ||+|-
T Consensus 6 cv~fgngfc--gdncg 19 (27)
T 2hgo_A 6 CVNFGNGFC--GDNCG 19 (27)
T ss_dssp CEEETTTEE--ECSSS
T ss_pred eEeecCccc--cCCcC
Confidence 777878888 56663
No 84
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=20.63 E-value=14 Score=26.60 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=23.3
Q ss_pred ceEEEeCccccceeccCCCccccchhcc
Q 022221 179 TAKISIDAKLAGAIIGKNGVNSKQICRL 206 (300)
Q Consensus 179 t~~~~iP~~~~G~iiG~gG~~ik~i~~~ 206 (300)
.+++.|-....|.|||++|..|.+|+..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4677888888999999999888887763
Done!