Query 022223
Match_columns 300
No_of_seqs 217 out of 557
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 15:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.7 1.6E-16 5.6E-21 119.1 8.4 65 90-156 7-71 (72)
2 2yus_A SWI/SNF-related matrix- 99.6 8.8E-16 3E-20 118.6 4.0 47 91-139 17-63 (79)
3 2elk_A SPCC24B10.08C protein; 99.5 6E-15 2E-19 107.0 6.4 48 92-140 9-57 (58)
4 2yum_A ZZZ3 protein, zinc fing 99.5 4.2E-15 1.4E-19 111.6 5.7 53 91-144 7-64 (75)
5 1x41_A Transcriptional adaptor 99.5 1.2E-14 4.2E-19 105.7 5.6 49 92-141 8-56 (60)
6 2eqr_A N-COR1, N-COR, nuclear 99.5 2.9E-14 1E-18 104.4 7.0 56 84-144 4-59 (61)
7 1guu_A C-MYB, MYB proto-oncoge 99.4 1.6E-13 5.3E-18 96.4 6.5 47 92-139 3-49 (52)
8 1gvd_A MYB proto-oncogene prot 99.4 2.3E-13 7.9E-18 95.7 5.6 47 92-139 3-49 (52)
9 2yqk_A Arginine-glutamic acid 99.4 9.1E-13 3.1E-17 97.5 7.3 55 86-144 3-57 (63)
10 2d9a_A B-MYB, MYB-related prot 99.4 6.5E-13 2.2E-17 95.8 5.8 49 90-139 6-54 (60)
11 1ity_A TRF1; helix-turn-helix, 99.3 2.1E-12 7.1E-17 95.9 7.4 54 87-141 5-60 (69)
12 2dim_A Cell division cycle 5-l 99.3 1.9E-12 6.5E-17 96.1 6.3 50 90-140 7-56 (70)
13 1w0t_A Telomeric repeat bindin 99.3 2.7E-12 9.3E-17 90.9 6.6 47 92-139 2-50 (53)
14 3sjm_A Telomeric repeat-bindin 99.3 5E-12 1.7E-16 93.9 6.8 47 92-139 11-59 (64)
15 2iw5_B Protein corest, REST co 99.3 1.7E-12 5.7E-17 118.5 4.7 49 89-139 130-178 (235)
16 2crg_A Metastasis associated p 99.2 1.6E-11 5.4E-16 92.7 7.4 52 89-144 5-56 (70)
17 2xag_B REST corepressor 1; ami 99.2 5.3E-12 1.8E-16 124.8 5.0 50 89-140 377-426 (482)
18 2din_A Cell division cycle 5-l 99.2 3.7E-11 1.3E-15 88.3 7.3 51 91-144 8-58 (66)
19 1irz_A ARR10-B; helix-turn-hel 99.2 3.2E-11 1.1E-15 91.0 7.1 56 88-145 3-63 (64)
20 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2.2E-11 7.5E-16 93.2 5.6 50 89-139 15-67 (73)
21 2ltp_A Nuclear receptor corepr 98.8 2.4E-12 8.2E-17 100.7 0.0 49 92-142 16-64 (89)
22 1gv2_A C-MYB, MYB proto-oncoge 99.1 4.9E-11 1.7E-15 93.7 5.6 47 92-139 4-50 (105)
23 2ckx_A NGTRF1, telomere bindin 99.1 2.3E-10 7.9E-15 89.4 7.8 50 94-143 2-54 (83)
24 2k9n_A MYB24; R2R3 domain, DNA 99.1 9.7E-11 3.3E-15 92.9 5.6 46 93-139 2-47 (107)
25 3osg_A MYB21; transcription-DN 99.1 1.4E-10 4.7E-15 94.6 6.5 52 87-140 6-57 (126)
26 3zqc_A MYB3; transcription-DNA 99.0 2E-10 6.9E-15 94.0 5.5 47 93-140 3-49 (131)
27 1wgx_A KIAA1903 protein; MYB D 99.0 1.4E-10 4.7E-15 89.4 4.1 45 93-138 9-56 (73)
28 2aje_A Telomere repeat-binding 99.0 4.3E-10 1.5E-14 91.5 7.3 56 87-142 8-66 (105)
29 1h8a_C AMV V-MYB, MYB transfor 99.0 2.5E-10 8.4E-15 92.8 5.8 48 91-139 26-73 (128)
30 2cjj_A Radialis; plant develop 99.0 3.5E-10 1.2E-14 90.1 6.4 50 93-143 9-61 (93)
31 2k9n_A MYB24; R2R3 domain, DNA 99.0 5.1E-10 1.8E-14 88.8 7.0 52 91-144 52-103 (107)
32 4a69_C Nuclear receptor corepr 99.0 2.3E-10 7.9E-15 90.8 4.5 51 88-143 39-89 (94)
33 2roh_A RTBP1, telomere binding 99.0 9.2E-10 3.2E-14 91.8 7.6 57 87-143 26-85 (122)
34 2juh_A Telomere binding protei 98.9 1.2E-09 4.1E-14 91.0 6.8 56 88-143 13-71 (121)
35 3osg_A MYB21; transcription-DN 98.9 1.5E-09 5.1E-14 88.5 7.2 51 91-143 61-111 (126)
36 1gv2_A C-MYB, MYB proto-oncoge 98.9 7.7E-10 2.6E-14 86.8 5.3 47 91-139 55-101 (105)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.9 2.5E-09 8.7E-14 81.4 6.4 45 92-138 8-55 (72)
38 2llk_A Cyclin-D-binding MYB-li 98.9 2.4E-09 8.1E-14 82.0 5.8 44 90-136 21-64 (73)
39 3zqc_A MYB3; transcription-DNA 98.8 3E-09 1E-13 87.0 5.6 49 92-142 54-102 (131)
40 1h89_C C-MYB, MYB proto-oncoge 98.8 3.7E-09 1.3E-13 88.6 5.9 48 91-139 57-104 (159)
41 1h8a_C AMV V-MYB, MYB transfor 98.8 3E-09 1E-13 86.4 4.6 46 91-138 78-123 (128)
42 4eef_G F-HB80.4, designed hema 98.8 1.1E-09 3.8E-14 84.9 0.6 47 89-136 17-66 (74)
43 1h89_C C-MYB, MYB proto-oncoge 98.6 1.8E-08 6.1E-13 84.4 4.1 47 90-138 108-154 (159)
44 1x58_A Hypothetical protein 49 98.5 1.4E-07 5E-12 70.8 6.1 44 92-136 8-53 (62)
45 1ign_A Protein (RAP1); RAP1,ye 98.3 4.7E-07 1.6E-11 83.3 3.9 48 93-141 9-61 (246)
46 2xag_B REST corepressor 1; ami 97.7 3.9E-06 1.3E-10 83.3 0.0 46 93-143 190-235 (482)
47 1fex_A TRF2-interacting telome 97.6 5.3E-05 1.8E-09 55.5 4.5 48 92-139 2-57 (59)
48 1ofc_X ISWI protein; nuclear p 97.5 0.00011 3.7E-09 69.3 5.8 49 91-139 211-273 (304)
49 1ofc_X ISWI protein; nuclear p 97.4 0.00019 6.7E-09 67.5 6.7 49 94-143 112-160 (304)
50 3hm5_A DNA methyltransferase 1 96.9 0.0022 7.6E-08 51.3 6.8 42 93-136 31-77 (93)
51 4b4c_A Chromodomain-helicase-D 96.9 0.0014 4.7E-08 56.4 5.8 55 88-142 3-60 (211)
52 4b4c_A Chromodomain-helicase-D 96.8 0.0025 8.4E-08 54.8 6.8 51 92-143 134-197 (211)
53 1ug2_A 2610100B20RIK gene prod 96.6 0.0078 2.7E-07 48.6 7.8 51 87-138 28-80 (95)
54 2ebi_A DNA binding protein GT- 96.2 0.0046 1.6E-07 47.0 4.4 55 89-144 1-68 (86)
55 2y9y_A Imitation switch protei 95.7 0.012 4.1E-07 57.0 5.7 49 94-143 125-174 (374)
56 2xb0_X Chromo domain-containin 95.7 0.0061 2.1E-07 56.5 3.6 27 93-119 169-195 (270)
57 2lr8_A CAsp8-associated protei 94.1 0.0035 1.2E-07 48.2 0.0 46 91-138 13-60 (70)
58 4iej_A DNA methyltransferase 1 94.7 0.081 2.8E-06 42.4 6.7 49 94-143 32-84 (93)
59 1dsq_A Nucleic acid binding pr 94.2 0.026 8.9E-07 34.9 2.2 20 2-21 2-21 (26)
60 2hzd_A Transcriptional enhance 93.9 0.076 2.6E-06 41.8 4.9 47 90-137 4-70 (82)
61 2y9y_A Imitation switch protei 93.0 0.16 5.3E-06 49.3 6.6 51 91-142 227-291 (374)
62 1nc8_A Nucleocapsid protein; H 89.4 0.14 4.8E-06 32.2 1.4 18 3-20 7-24 (29)
63 1a6b_B Momulv, zinc finger pro 87.8 0.25 8.4E-06 33.8 1.9 20 3-22 11-30 (40)
64 2ihx_A Nucleocapsid (NC) prote 83.7 0.52 1.8E-05 33.8 2.1 19 4-22 32-50 (61)
65 1u6p_A GAG polyprotein; MLV, A 82.6 0.47 1.6E-05 34.5 1.5 20 3-22 24-43 (56)
66 2a51_A Nucleocapsid protein; s 81.1 0.87 3E-05 29.9 2.2 16 4-19 2-17 (39)
67 1ign_A Protein (RAP1); RAP1,ye 80.6 2.4 8.2E-05 39.2 5.7 28 114-142 173-200 (246)
68 2bl6_A Nucleocapsid protein P1 80.1 0.7 2.4E-05 30.0 1.5 17 4-20 2-18 (37)
69 2bl6_A Nucleocapsid protein P1 78.9 1 3.5E-05 29.2 2.0 17 4-20 21-37 (37)
70 1a1t_A Nucleocapsid protein; s 77.9 0.99 3.4E-05 31.4 1.8 16 4-19 14-29 (55)
71 2ihx_A Nucleocapsid (NC) prote 77.7 1.1 3.6E-05 32.2 2.0 21 1-21 3-23 (61)
72 2ec7_A GAG polyprotein (PR55GA 76.5 1.2 4.2E-05 30.6 1.9 18 3-20 7-24 (49)
73 2a51_A Nucleocapsid protein; s 76.0 1.2 4.2E-05 29.2 1.7 15 5-19 24-38 (39)
74 2xb0_X Chromo domain-containin 74.3 6.7 0.00023 36.2 6.8 44 93-136 4-50 (270)
75 2ec7_A GAG polyprotein (PR55GA 74.3 1.4 4.9E-05 30.3 1.8 19 3-21 28-46 (49)
76 1a1t_A Nucleocapsid protein; s 73.6 1.4 4.8E-05 30.6 1.6 19 3-21 34-52 (55)
77 1cl4_A Protein (GAG polyprotei 71.0 0.85 2.9E-05 32.3 0.0 20 2-21 1-20 (60)
78 1cl4_A Protein (GAG polyprotei 69.4 2.6 8.9E-05 29.8 2.3 20 3-22 31-50 (60)
79 3nyb_B Protein AIR2; polya RNA 64.2 3.4 0.00012 31.8 2.2 20 3-22 47-66 (83)
80 2cqf_A RNA-binding protein LIN 63.5 3.6 0.00012 29.7 2.1 18 3-20 8-25 (63)
81 2cqf_A RNA-binding protein LIN 63.1 3.7 0.00013 29.6 2.1 19 3-21 30-48 (63)
82 2li8_A Protein LIN-28 homolog 60.9 3.8 0.00013 30.8 1.8 16 4-19 26-41 (74)
83 2li8_A Protein LIN-28 homolog 60.5 4.3 0.00015 30.5 2.1 19 3-21 47-65 (74)
84 3ts2_A Protein LIN-28 homolog 57.6 4.1 0.00014 34.0 1.7 18 3-20 98-115 (148)
85 2lli_A Protein AIR2; RNA surve 55.4 6.1 0.00021 31.3 2.3 20 3-22 65-84 (124)
86 3nyb_B Protein AIR2; polya RNA 53.7 4.7 0.00016 31.0 1.3 19 3-21 6-24 (83)
87 2ysa_A Retinoblastoma-binding 50.5 7.1 0.00024 28.2 1.8 20 2-21 7-26 (55)
88 2li6_A SWI/SNF chromatin-remod 48.7 19 0.00064 28.6 4.2 31 113-144 71-101 (116)
89 2eqy_A RBP2 like, jumonji, at 47.9 42 0.0014 26.9 6.2 33 113-146 64-100 (122)
90 2lli_A Protein AIR2; RNA surve 45.8 11 0.00036 29.9 2.3 18 3-20 5-22 (124)
91 2lm1_A Lysine-specific demethy 38.6 60 0.002 25.0 5.6 32 113-145 66-101 (107)
92 2jrz_A Histone demethylase jar 37.6 40 0.0014 26.8 4.5 32 113-145 62-97 (117)
93 2cxy_A BAF250B subunit, HBAF25 33.9 60 0.002 26.0 5.0 32 113-145 73-108 (125)
94 2rq5_A Protein jumonji; develo 33.2 28 0.00096 28.3 2.9 33 113-146 64-101 (121)
95 1kkx_A Transcription regulator 32.7 37 0.0013 27.5 3.6 32 113-145 70-101 (123)
96 1ig6_A MRF-2, modulator recogn 32.2 26 0.00089 27.2 2.5 31 113-144 55-90 (107)
97 1c20_A DEAD ringer protein; DN 31.3 63 0.0022 25.9 4.7 33 113-146 74-111 (128)
98 2lc3_A E3 ubiquitin-protein li 29.9 61 0.0021 25.7 4.3 53 87-143 8-81 (88)
99 3o2i_A Uncharacterized protein 29.4 31 0.0011 28.4 2.6 26 92-117 48-74 (125)
100 2jxj_A Histone demethylase jar 25.3 64 0.0022 24.4 3.6 30 113-143 58-91 (96)
101 1x3u_A Transcriptional regulat 25.0 1.5E+02 0.005 20.3 5.2 46 94-144 16-61 (79)
102 3ukw_C Bimax1 peptide; arm rep 23.7 14 0.00049 23.4 -0.3 17 84-100 3-19 (28)
103 2kk0_A AT-rich interactive dom 22.9 85 0.0029 25.9 4.2 32 113-145 86-122 (145)
104 1fse_A GERE; helix-turn-helix 20.9 2E+02 0.0067 19.3 5.6 48 92-144 9-56 (74)
105 1je8_A Nitrate/nitrite respons 20.4 2E+02 0.0068 20.6 5.3 46 94-144 21-66 (82)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=1.6e-16 Score=119.11 Aligned_cols=65 Identities=32% Similarity=0.529 Sum_probs=59.8
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhhcccccCCCcccc
Q 022223 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFNQNKRRRRSSLFD 156 (300)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~~~k~krr~Sl~d 156 (300)
.+..+||+|||++|++++++||. +|..|| .+|++||..||+.||++||.+..+.+..+++.|||+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia-~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKIS-KLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 34567999999999999999999 999999 699999999999999999999988888888898885
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.57 E-value=8.8e-16 Score=118.57 Aligned_cols=47 Identities=32% Similarity=0.501 Sum_probs=43.4
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
...+||+||+++||+||++|| ++|..|| .+|++||..||+.||++|+
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA-~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHH-HHHSSCCHHHHHHHHTTSC
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHhc
Confidence 367899999999999999999 6999999 7999999999999998764
No 3
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=6e-15 Score=107.01 Aligned_cols=48 Identities=27% Similarity=0.598 Sum_probs=44.9
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcC-CCCHHHHHHHHHHHHH
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK-TRTPTQVASHAQKYFL 140 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~-TRT~~QVrSHAQKYF~ 140 (300)
..+||+||+++|++++++||.++|..|| .+|+ +||..||+.|+++||+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA-~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIA-DYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHH-HHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHHCCCCCHHHHHHHHHHHcc
Confidence 3469999999999999999988999999 7999 9999999999999986
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.2e-15 Score=111.65 Aligned_cols=53 Identities=32% Similarity=0.465 Sum_probs=47.8
Q ss_pred CCCccCHHHHHHHHHHHHHcCC-----CCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGK-----GDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGk-----GdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~ 144 (300)
...+||+|||++|+++|++||. ++|..|| .+|++||..||+.||++||.++.+
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA-~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHH-HHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHH-HHhCCCCHHHHHHHHHHHHHHHHh
Confidence 3457999999999999999996 6899999 799999999999999999987554
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.2e-14 Score=105.65 Aligned_cols=49 Identities=29% Similarity=0.552 Sum_probs=45.3
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHH
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r 141 (300)
..+||+||+++|++++++||.++|..|| .+|++||..||+.||++||..
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHH-HHhCCCCHHHHHHHHHHHccC
Confidence 4579999999999999999988999999 799999999999999999763
No 6
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.9e-14 Score=104.45 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=49.3
Q ss_pred cCCccccCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022223 84 GRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 84 ~~~~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~ 144 (300)
+..++|+...+||+|||++|++||.+||+ +|..|| .+|++||..||+.| ||...+.
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v~~---Yy~~Kk~ 59 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCVLY---YYLTKKN 59 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHHHH---HHHHTCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHH---HHHhcCC
Confidence 45677888999999999999999999997 999999 89999999999887 6665443
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.44 E-value=1.6e-13 Score=96.40 Aligned_cols=47 Identities=28% Similarity=0.495 Sum_probs=44.2
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
..+||+||+++|++++++||.++|..|| .++++||..||+.|+++|+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHH-HTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999999999 7999999999999999886
No 8
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.41 E-value=2.3e-13 Score=95.70 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=43.7
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
..+||+||+++|++++++||.++|..|| .++++||..||+.|+++|+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 3579999999999999999988999999 7999999999999998875
No 9
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=9.1e-13 Score=97.46 Aligned_cols=55 Identities=24% Similarity=0.472 Sum_probs=46.4
Q ss_pred CccccCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022223 86 SRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 86 ~~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~ 144 (300)
.+++.....||+||+++|++||.+||+ ||..|++++|++||..||..+ ||...+.
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~f---YY~wKkt 57 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITF---YYYWKKT 57 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHH---HHHHHCS
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHH---HhcccCC
Confidence 455566678999999999999999999 999999558999999999876 6665443
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=6.5e-13 Score=95.85 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=44.4
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
.+..+||+||+++|++++++||.++|..|| .++++||..||+.||++|+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHH-HHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHccCCCHHHHHHHHHHHc
Confidence 344579999999999999999977999999 7999999999999998775
No 11
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.34 E-value=2.1e-12 Score=95.85 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=48.2
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcC--CCCHHHHHHHHHHHHHH
Q 022223 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYFLR 141 (300)
Q Consensus 87 ~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~--TRT~~QVrSHAQKYF~r 141 (300)
..+++..+||+||++++++++++||.++|..|| .+++ +||..||+.++.+|+..
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHH-HHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHH-HHcCcCCCCHHHHHHHHHHHcCC
Confidence 345667789999999999999999988999999 7899 99999999999988754
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.9e-12 Score=96.14 Aligned_cols=50 Identities=18% Similarity=0.456 Sum_probs=44.9
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHH
Q 022223 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140 (300)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~ 140 (300)
.+..+||+||+++|++++++||.++|..|| .+|++||..||+.|+++|+.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHH-HHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHhcCCCHHHHHHHHHHHcC
Confidence 345579999999999999999977999999 79999999999999887753
No 13
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.32 E-value=2.7e-12 Score=90.87 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=43.5
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcC--CCCHHHHHHHHHHHH
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYF 139 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~--TRT~~QVrSHAQKYF 139 (300)
..+||+||++++++++++||.++|..|| .+++ +||..||+.++.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999988999999 6899 999999999998875
No 14
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.29 E-value=5e-12 Score=93.89 Aligned_cols=47 Identities=28% Similarity=0.466 Sum_probs=42.0
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcC--CCCHHHHHHHHHHHH
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYF 139 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~--TRT~~QVrSHAQKYF 139 (300)
..+||+||+++|++++++||.++|..|| .+++ +||..||+.++.++.
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAIS-KNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHH-hhcCCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999999999 5654 899999999998764
No 15
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.28 E-value=1.7e-12 Score=118.51 Aligned_cols=49 Identities=27% Similarity=0.504 Sum_probs=44.6
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
.+...+||+||+++|++||.+||+ ||..|| .+|+|||..||+.||++|.
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IA-k~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHH-HHHSSCCHHHHHHHHHHTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 355778999999999999999998 999999 6999999999999987664
No 16
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.24 E-value=1.6e-11 Score=92.73 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=44.8
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022223 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~ 144 (300)
|+....||+||+++|++||.+||+ ||..|++++|+|||..||..+ ||.....
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~f---YY~wKkt 56 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEY---YYMWKTT 56 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHH---HHHHHTC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHH---HHhhcCC
Confidence 466778999999999999999999 999999548999999999988 5555443
No 17
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.22 E-value=5.3e-12 Score=124.82 Aligned_cols=50 Identities=26% Similarity=0.479 Sum_probs=45.2
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHH
Q 022223 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140 (300)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~ 140 (300)
.+...+||+||+++|++||.+||+ ||+.|| .+|+|||..||+.||++|+.
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA-~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHH-HHHSSCCHHHHHHHHHHTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHhCCCCHHHHHHHHHHHHH
Confidence 355789999999999999999999 999999 79999999999999887643
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=3.7e-11 Score=88.26 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=45.0
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~ 144 (300)
+..+||+||+++|++++++||. +|..||+ +++ ||..||+.||++|+....+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhc
Confidence 3457999999999999999998 9999995 665 9999999999999877654
No 19
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.19 E-value=3.2e-11 Score=90.99 Aligned_cols=56 Identities=29% Similarity=0.428 Sum_probs=48.4
Q ss_pred cccCCCccCHHHHHHHHHHHHHcCCCC---HHhHhhhhcC--CCCHHHHHHHHHHHHHHhhhc
Q 022223 88 ERKRGVPWTEDEHRLFLLGLQKVGKGD---WRGISRNFVK--TRTPTQVASHAQKYFLRRFNQ 145 (300)
Q Consensus 88 ~rKkg~~WTeEEh~lFLegLekyGkGd---Wk~IAr~~V~--TRT~~QVrSHAQKYF~r~~~~ 145 (300)
.+|.+..||+|+|++|++|++++|. + |+.|. ++++ ..|..||+||.|||+.++.+.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il-~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKIL-DLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHH-HHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 4677888999999999999999994 5 89998 5765 579999999999999988753
No 20
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.18 E-value=2.2e-11 Score=93.17 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=43.8
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCC---CCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 89 RKRGVPWTEDEHRLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGk---GdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
+....+||.||+++|++||++||+ .+|..|| .+|++||..||+.||+++.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA-~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 344678999999999999999995 3799999 7999999999999988653
No 21
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.79 E-value=2.4e-12 Score=100.66 Aligned_cols=49 Identities=29% Similarity=0.449 Sum_probs=44.9
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHh
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~ 142 (300)
..+||+||+++|++++++||. +|..|| .+|++||..||+.||++|+.+.
T Consensus 16 ~~~WT~eEd~~l~~~~~~~G~-~W~~IA-~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEHGR-NWSAIA-RMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 347999999999999999998 899999 7999999999999999887654
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.13 E-value=4.9e-11 Score=93.66 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=43.6
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
..+||+||+++|++++++||.++|..|| .++++||..||+.|+++|+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHh-hhhcCCCHHHHHHHHHhcc
Confidence 3579999999999999999998999999 7999999999999998875
No 23
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.09 E-value=2.3e-10 Score=89.39 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=45.0
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhHhhh---hcCCCCHHHHHHHHHHHHHHhh
Q 022223 94 PWTEDEHRLFLLGLQKVGKGDWRGISRN---FVKTRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 94 ~WTeEEh~lFLegLekyGkGdWk~IAr~---~V~TRT~~QVrSHAQKYF~r~~ 143 (300)
+||+||++.+++|+++||.|+|..|++. ++..||..||+.++.+++.+..
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999954 3789999999999999876554
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.08 E-value=9.7e-11 Score=92.92 Aligned_cols=46 Identities=30% Similarity=0.475 Sum_probs=43.2
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 93 ~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
..||+||+++|++++++||.++|..|| .+|++||..||+.++.+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHH-HHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHh-hhcCCCCHHHHHHHHHHHH
Confidence 469999999999999999988999999 7999999999999998775
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.08 E-value=1.4e-10 Score=94.63 Aligned_cols=52 Identities=17% Similarity=0.357 Sum_probs=45.9
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHH
Q 022223 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140 (300)
Q Consensus 87 ~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~ 140 (300)
.+..+..+||+||++++++++++||. +|..|| .++++||..||+.|+++|+.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIA-ATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHH-HTCTTCCHHHHHHHHHHHTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHhhhcc
Confidence 34455667999999999999999998 999999 79999999999999988863
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.03 E-value=2e-10 Score=94.02 Aligned_cols=47 Identities=26% Similarity=0.409 Sum_probs=43.8
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHH
Q 022223 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140 (300)
Q Consensus 93 ~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~ 140 (300)
.+||+||++++++++++||.++|..|| .+|++||..||+.|+++|+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGT-TSCTTSCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHH-HHHCCCCHHHHHHHHhhccC
Confidence 469999999999999999988999999 79999999999999988863
No 27
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.03 E-value=1.4e-10 Score=89.37 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=40.9
Q ss_pred CccCHHHHHHHHHHHHHcCC---CCHHhHhhhhcCCCCHHHHHHHHHHH
Q 022223 93 VPWTEDEHRLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKY 138 (300)
Q Consensus 93 ~~WTeEEh~lFLegLekyGk---GdWk~IAr~~V~TRT~~QVrSHAQKY 138 (300)
..||+||+++|++||..|++ ++|..|| .+|++||..||+.||+..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA-~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVA-AAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHH-HHTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 46999999999999999998 5799999 799999999999997644
No 28
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.03 E-value=4.3e-10 Score=91.53 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=47.7
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhh---cCCCCHHHHHHHHHHHHHHh
Q 022223 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRR 142 (300)
Q Consensus 87 ~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~---V~TRT~~QVrSHAQKYF~r~ 142 (300)
..+++..+||+||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++...
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 356667789999999999999999999999999643 27899999999999887544
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.02 E-value=2.5e-10 Score=92.83 Aligned_cols=48 Identities=25% Similarity=0.451 Sum_probs=44.1
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
+..+||+||++++++++++||.++|..|| .++++||..||+.|+++|+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIA-KHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHH-HHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHH-HHhcCCcHHHHHHHHHHhc
Confidence 34579999999999999999988999999 7999999999999998775
No 30
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.02 E-value=3.5e-10 Score=90.08 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=44.2
Q ss_pred CccCHHHHHHHHHHHHHcCC---CCHHhHhhhhcCCCCHHHHHHHHHHHHHHhh
Q 022223 93 VPWTEDEHRLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 93 ~~WTeEEh~lFLegLekyGk---GdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~ 143 (300)
..||.||+++|++||.+||+ .+|..|| .+|++||..||+.||+++.....
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA-~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVA-RAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999985 3699999 79999999999999998765543
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.01 E-value=5.1e-10 Score=88.75 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=46.0
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~ 144 (300)
+..+||+||+++|++++++||. +|..|| .+|++||..||+.|+..+..+..+
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKIS-KFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHH-HHCCCCCHHHHHHHHHHHHhhHHH
Confidence 3568999999999999999998 999999 699999999999999877665543
No 32
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=99.00 E-value=2.3e-10 Score=90.81 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=44.9
Q ss_pred cccCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhh
Q 022223 88 ERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 88 ~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~ 143 (300)
.|+....||+||+++|.+++.+||+ +|..|+ ++|++||..||..| ||...+
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~cV~~---YY~~Kk 89 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLY---YYLTKK 89 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHHHHH---HHHHSC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHHHHH---Hhcccc
Confidence 4466778999999999999999998 999998 89999999999988 665543
No 33
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.98 E-value=9.2e-10 Score=91.80 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=48.9
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhh---cCCCCHHHHHHHHHHHHHHhh
Q 022223 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 87 ~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~---V~TRT~~QVrSHAQKYF~r~~ 143 (300)
..+++..+||+||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++....
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 345667789999999999999999999999999643 378999999999999876544
No 34
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.94 E-value=1.2e-09 Score=91.00 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=48.6
Q ss_pred cccCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhh---cCCCCHHHHHHHHHHHHHHhh
Q 022223 88 ERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 88 ~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~---V~TRT~~QVrSHAQKYF~r~~ 143 (300)
.+++..+||+||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++....
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 45667789999999999999999999999999644 478999999999998877544
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.94 E-value=1.5e-09 Score=88.46 Aligned_cols=51 Identities=24% Similarity=0.427 Sum_probs=45.2
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhh
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~ 143 (300)
+..+||+||+++|++++++||. +|..|| .+|++||..||+.|+..+..++.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIA-KFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHhcC
Confidence 3458999999999999999997 899999 79999999999999877666554
No 36
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.94 E-value=7.7e-10 Score=86.80 Aligned_cols=47 Identities=23% Similarity=0.580 Sum_probs=42.6
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
+..+||+||+++|++++++||. +|..|| .+|++||..||+.|+..+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHH-TTCTTCCHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 4568999999999999999997 999999 7999999999999987553
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.89 E-value=2.5e-09 Score=81.44 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=39.6
Q ss_pred CCccCHHHHHHHHHHHHHcCCC---CHHhHhhhhcCCCCHHHHHHHHHHH
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKG---DWRGISRNFVKTRTPTQVASHAQKY 138 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkG---dWk~IAr~~V~TRT~~QVrSHAQKY 138 (300)
...||+||+++|.+||.+|+.| +|..|| .++ .||..||+.||+++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA-~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIA-HEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHh-CCCHHHHHHHHHHH
Confidence 3469999999999999999964 599999 678 59999999998765
No 38
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.87 E-value=2.4e-09 Score=81.97 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=39.4
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHH
Q 022223 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQ 136 (300)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQ 136 (300)
-+..+||+||++++++++++||. +|..|| .++ .||..||+.++.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~-kW~~IA-~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN-DWATIG-AAL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS-CHHHHH-HHH-TSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CHHHHH-HHh-CCCHHHHHHHHH
Confidence 34567999999999999999998 699999 677 999999999975
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.84 E-value=3e-09 Score=87.04 Aligned_cols=49 Identities=20% Similarity=0.434 Sum_probs=43.9
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHh
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~ 142 (300)
..+||+||+++|++++.+||. +|..|| .++++||..||+.|+..++.+.
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIA-KLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHT-TTSTTCCHHHHHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHH
Confidence 457999999999999999997 999999 7999999999999988776544
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.82 E-value=3.7e-09 Score=88.58 Aligned_cols=48 Identities=25% Similarity=0.393 Sum_probs=44.3
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
+..+||+||++++++++++||.++|..|| .++++||..||+.++++|+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHH-HTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHH-HHcCCCCHHHHHHHHHHHh
Confidence 45689999999999999999987899999 7999999999999998775
No 41
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.81 E-value=3e-09 Score=86.44 Aligned_cols=46 Identities=26% Similarity=0.583 Sum_probs=41.8
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHH
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 138 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKY 138 (300)
+..+||+||++++++++++||. +|..|| .+|++||..||+.|+..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHG-GGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 4568999999999999999997 999999 799999999999997643
No 42
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.76 E-value=1.1e-09 Score=84.91 Aligned_cols=47 Identities=34% Similarity=0.680 Sum_probs=39.9
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCC---CHHhHhhhhcCCCCHHHHHHHHH
Q 022223 89 RKRGVPWTEDEHRLFLLGLQKVGKG---DWRGISRNFVKTRTPTQVASHAQ 136 (300)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGkG---dWk~IAr~~V~TRT~~QVrSHAQ 136 (300)
+-.+..||.||+++|..||.+|+++ +|.+|| ..|+.||+.||+.|||
T Consensus 17 ~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA-~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVA-QYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -----CCCTTHHHHHHHHTSSSCSSCCSSSTTTG-GGSCSSCHHHHHGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHcCCCCHHHHHHHHH
Confidence 3345679999999999999999986 799999 7999999999999986
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.63 E-value=1.8e-08 Score=84.42 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=42.3
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHH
Q 022223 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 138 (300)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKY 138 (300)
.+..+||+||++++++++++||. +|..|| .+|++||..||+.|+..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCC-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 34678999999999999999997 999999 699999999999997643
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.52 E-value=1.4e-07 Score=70.82 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=39.2
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhh--hhcCCCCHHHHHHHHH
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISR--NFVKTRTPTQVASHAQ 136 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr--~~V~TRT~~QVrSHAQ 136 (300)
..+||+||++.+++|+++||+ .|..|+. .|+..||...+++.+.
T Consensus 8 r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 8 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHH
Confidence 346999999999999999999 9999995 3788999999998765
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.25 E-value=4.7e-07 Score=83.34 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=43.6
Q ss_pred CccCHHHHHHHHHHHHHcCCCC-----HHhHhhhhcCCCCHHHHHHHHHHHHHH
Q 022223 93 VPWTEDEHRLFLLGLQKVGKGD-----WRGISRNFVKTRTPTQVASHAQKYFLR 141 (300)
Q Consensus 93 ~~WTeEEh~lFLegLekyGkGd-----Wk~IAr~~V~TRT~~QVrSHAQKYF~r 141 (300)
..||+||++++|+.+++||..+ |..|| .+++.||..||+.||.+|+.+
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHhh
Confidence 4799999999999999999753 99999 799999999999999988754
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.75 E-value=3.9e-06 Score=83.29 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=0.0
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhh
Q 022223 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 93 ~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~ 143 (300)
..||+||+.+|.+||.+||+ +|..|+ .+|++||..||..| ||.+.+
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~-~~lp~Ksv~e~V~y---YY~WKK 235 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQ-QMLPDKSIASLVKF---YYSWKK 235 (482)
T ss_dssp ---------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHH-HHcCCCCHHHHHHH---hccccc
Confidence 47999999999999999999 999999 79999999999988 444443
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.62 E-value=5.3e-05 Score=55.47 Aligned_cols=48 Identities=10% Similarity=0.269 Sum_probs=42.1
Q ss_pred CCccCHHHHHHHHHHHHHc--------CCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223 92 GVPWTEDEHRLFLLGLQKV--------GKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 92 g~~WTeEEh~lFLegLeky--------GkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (300)
..+||+||+..+++.|.+| |..-|+.|++..++.+|-.++|.|+.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999 65679999954799999999999988764
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.49 E-value=0.00011 Score=69.25 Aligned_cols=49 Identities=24% Similarity=0.428 Sum_probs=43.3
Q ss_pred CCCccCHHHHHHHHHHHHHcCC---CCHHhHhh-----------hhcCCCCHHHHHHHHHHHH
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGK---GDWRGISR-----------NFVKTRTPTQVASHAQKYF 139 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGk---GdWk~IAr-----------~~V~TRT~~QVrSHAQKYF 139 (300)
++..||+|||+.||-+|.+||. |+|..|.. -|+.+||+.++..|++--.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 5567999999999999999999 99999962 4899999999999998443
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.43 E-value=0.00019 Score=67.55 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=45.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhh
Q 022223 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 94 ~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~ 143 (300)
.||..+-..|+.|+.+||+.+|..|| ..|++||+.+|+.|++-|+.+-.
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA-~ev~~Kt~eEV~~Y~~vFw~ry~ 160 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERCT 160 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHT-TSSTTCCHHHHHHHHHHHHHHGG
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhHH
Confidence 59999999999999999999999999 79999999999999988877663
No 50
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.89 E-value=0.0022 Score=51.27 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=37.7
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhHhhhhc-----CCCCHHHHHHHHH
Q 022223 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFV-----KTRTPTQVASHAQ 136 (300)
Q Consensus 93 ~~WTeEEh~lFLegLekyGkGdWk~IAr~~V-----~TRT~~QVrSHAQ 136 (300)
..||.||...+++.+++||- .|-.|+ ... +.||..+++.++-
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~-DRy~~~~~~~Rt~EdLK~RyY 77 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIH-DRYDHQQFKKRSVEDLKERYY 77 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHH-HHSCTTTSCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-Ceeeeh-hhhccCCCCCCCHHHHHHHHH
Confidence 57999999999999999998 999999 555 5799999999953
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.86 E-value=0.0014 Score=56.44 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=42.6
Q ss_pred cccCCCccCHHHHHHHHHHHHHcC--CCCHHhHhhh-hcCCCCHHHHHHHHHHHHHHh
Q 022223 88 ERKRGVPWTEDEHRLFLLGLQKVG--KGDWRGISRN-FVKTRTPTQVASHAQKYFLRR 142 (300)
Q Consensus 88 ~rKkg~~WTeEEh~lFLegLekyG--kGdWk~IAr~-~V~TRT~~QVrSHAQKYF~r~ 142 (300)
+++....||+.|-+.|+.|+.+|| .++|..|++. -+..||..+|+.+++.+..+.
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 355667899999999999999999 6899999842 256799999999888776554
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.79 E-value=0.0025 Score=54.85 Aligned_cols=51 Identities=22% Similarity=0.551 Sum_probs=39.6
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhh-------------hhcCCCCHHHHHHHHHHHHHHhh
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISR-------------NFVKTRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr-------------~~V~TRT~~QVrSHAQKYF~r~~ 143 (300)
...||+||++.+|.|+.+||.|+|..|-. .+..+++..++..++. |+++.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~l 197 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKLL 197 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHHH
Confidence 44699999999999999999999999953 1234566777887775 666544
No 53
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.58 E-value=0.0078 Score=48.60 Aligned_cols=51 Identities=24% Similarity=0.383 Sum_probs=44.2
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCC--CCHHhHhhhhcCCCCHHHHHHHHHHH
Q 022223 87 RERKRGVPWTEDEHRLFLLGLQKVGK--GDWRGISRNFVKTRTPTQVASHAQKY 138 (300)
Q Consensus 87 ~~rKkg~~WTeEEh~lFLegLekyGk--GdWk~IAr~~V~TRT~~QVrSHAQKY 138 (300)
...++-+.||.||++..|.+.++-|. .-|..|| ..++.|++.||..+.|..
T Consensus 28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA-~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVIS-QQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHH-HHHSSCCHHHHHHHHHHH
T ss_pred CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHH-HHHccCCHHHHHHHHHHH
Confidence 34456788999999999999999985 4799999 799999999999998754
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.23 E-value=0.0046 Score=46.99 Aligned_cols=55 Identities=20% Similarity=0.365 Sum_probs=40.1
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCC---------CCHHhHhhhhcC----CCCHHHHHHHHHHHHHHhhh
Q 022223 89 RKRGVPWTEDEHRLFLLGLQKVGK---------GDWRGISRNFVK----TRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGk---------GdWk~IAr~~V~----TRT~~QVrSHAQKYF~r~~~ 144 (300)
+++...||++|-.+||++....-. ..|..||. .+. .||+.||+.-+.+-...-.+
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 356678999999999999875221 26999994 443 69999999987655444333
No 55
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.70 E-value=0.012 Score=57.02 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=44.2
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhHhhhhcC-CCCHHHHHHHHHHHHHHhh
Q 022223 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVK-TRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 94 ~WTeEEh~lFLegLekyGkGdWk~IAr~~V~-TRT~~QVrSHAQKYF~r~~ 143 (300)
.||..+=..|+.|+.+||+.+...|| ..|. +||..+|+.+++-|+.+..
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA-~ev~~~Kt~eEV~~Y~~vFw~Ry~ 174 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIA-RELAPGKTLEEVRAYAKAFWSNIE 174 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHH-SSCCCSSSHHHHHHHHHHHHHTCS
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHH-HHHccCCCHHHHHHHHHHHHHhhh
Confidence 59999999999999999999999999 6887 9999999999887776554
No 56
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.70 E-value=0.0061 Score=56.47 Aligned_cols=27 Identities=37% Similarity=0.816 Sum_probs=25.7
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhHh
Q 022223 93 VPWTEDEHRLFLLGLQKVGKGDWRGIS 119 (300)
Q Consensus 93 ~~WTeEEh~lFLegLekyGkGdWk~IA 119 (300)
..|+.+|+..+|.||-+||.|+|..|.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 469999999999999999999999996
No 57
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.14 E-value=0.0035 Score=48.17 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=39.4
Q ss_pred CCCccCHHHHHHHHHHHHHcCC--CCHHhHhhhhcCCCCHHHHHHHHHHH
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGK--GDWRGISRNFVKTRTPTQVASHAQKY 138 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGk--GdWk~IAr~~V~TRT~~QVrSHAQKY 138 (300)
.-+.||.||++..|...++-|. .-|..|| ..+ .||+.||..+.|..
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA-~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLA-AKL-DKNPNQVSERFQQL 60 (70)
Confidence 3568999999999999999996 4699999 566 79999999987754
No 58
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.66 E-value=0.081 Score=42.41 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=40.2
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhHhhhhc----CCCCHHHHHHHHHHHHHHhh
Q 022223 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFV----KTRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 94 ~WTeEEh~lFLegLekyGkGdWk~IAr~~V----~TRT~~QVrSHAQKYF~r~~ 143 (300)
.||.||-..+++.+++|+- .|--|+..|- ..||..+++.++-..-.++.
T Consensus 32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~ 84 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999997 9999995444 37999999999654444443
No 59
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=94.16 E-value=0.026 Score=34.87 Aligned_cols=20 Identities=40% Similarity=0.934 Sum_probs=17.9
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 022223 2 SRSCSQCGNNGHNSRTCAEA 21 (300)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~~~ 21 (300)
.++|-.||..||-+|.|+..
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC
T ss_pred CCeeEeCCCCCcccccCCCc
Confidence 46899999999999999954
No 60
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=93.92 E-value=0.076 Score=41.77 Aligned_cols=47 Identities=32% Similarity=0.391 Sum_probs=34.6
Q ss_pred cCCCccCHHHHHHHHHHHHHcCC-CCH--------------HhHhhhhc-----CCCCHHHHHHHHHH
Q 022223 90 KRGVPWTEDEHRLFLLGLQKVGK-GDW--------------RGISRNFV-----KTRTPTQVASHAQK 137 (300)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGk-GdW--------------k~IAr~~V-----~TRT~~QVrSHAQK 137 (300)
+...-|.++=+..|++||..|-. |.| ..|+ .|| .+||.+||.||-|-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs-~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIA-RYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHH-HHHHHHHSCCCCSHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHH-HHHHHHHcccCCccchhHHHHH
Confidence 34456999999999999999874 222 2344 333 57999999999873
No 61
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.02 E-value=0.16 Score=49.31 Aligned_cols=51 Identities=25% Similarity=0.428 Sum_probs=42.4
Q ss_pred CCCccCHHHHHHHHHHHHHcCC---CCHHhHhh-----------hhcCCCCHHHHHHHHHHHHHHh
Q 022223 91 RGVPWTEDEHRLFLLGLQKVGK---GDWRGISR-----------NFVKTRTPTQVASHAQKYFLRR 142 (300)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGk---GdWk~IAr-----------~~V~TRT~~QVrSHAQKYF~r~ 142 (300)
++..||+||++.+|-+|.+||. |.|..|-. -|+.+||+.++.-++. .+++.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~-tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN-TLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH-HHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH-HHHHH
Confidence 3457999999999999999999 99999943 3599999999998886 44443
No 62
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=89.36 E-value=0.14 Score=32.17 Aligned_cols=18 Identities=39% Similarity=1.041 Sum_probs=16.4
Q ss_pred CccCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAE 20 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (300)
.+|-.||..||-+|.|+.
T Consensus 7 ~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CBCTTTSCBSSCGGGCCS
T ss_pred CEEEECCccccCHhHCcc
Confidence 479999999999999984
No 63
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=87.77 E-value=0.25 Score=33.82 Aligned_cols=20 Identities=25% Similarity=0.778 Sum_probs=17.5
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAEAG 22 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (300)
-+|-.||..||-+|+|+...
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 47999999999999999643
No 64
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=83.72 E-value=0.52 Score=33.84 Aligned_cols=19 Identities=32% Similarity=0.908 Sum_probs=12.1
Q ss_pred ccCCCCCCCCCCCCCCCCC
Q 022223 4 SCSQCGNNGHNSRTCAEAG 22 (300)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~~~ 22 (300)
+|-.||..||-+|.|+...
T Consensus 32 ~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 32 RCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp BCTTTCCBSSCGGGCCCCC
T ss_pred eeCCCCCCCCCcCCCcCCC
Confidence 4666666666666666543
No 65
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=82.64 E-value=0.47 Score=34.52 Aligned_cols=20 Identities=25% Similarity=0.778 Sum_probs=17.5
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAEAG 22 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (300)
-+|-.||..||-+|.|+...
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 36999999999999999654
No 66
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=81.07 E-value=0.87 Score=29.90 Aligned_cols=16 Identities=44% Similarity=1.209 Sum_probs=9.9
Q ss_pred ccCCCCCCCCCCCCCC
Q 022223 4 SCSQCGNNGHNSRTCA 19 (300)
Q Consensus 4 ~CS~Cgn~GHNsRTC~ 19 (300)
+|-.||..||-+|.|+
T Consensus 2 ~C~~Cg~~GH~a~~C~ 17 (39)
T 2a51_A 2 TCFNCGKPGHTARMCR 17 (39)
T ss_dssp BCTTTCCBSSCTTTCC
T ss_pred eeeccCCCCcccccCC
Confidence 4556666666666665
No 67
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=80.62 E-value=2.4 Score=39.15 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=25.2
Q ss_pred CHHhHhhhhcCCCCHHHHHHHHHHHHHHh
Q 022223 114 DWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (300)
Q Consensus 114 dWk~IAr~~V~TRT~~QVrSHAQKYF~r~ 142 (300)
-|+.|| .+.+.||...+|.++.|+..+.
T Consensus 173 ~fk~ia-~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFA-EEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHH-HHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHH-HHCCCCChhhHHHHHHHHHhhc
Confidence 699999 7999999999999999887655
No 68
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=80.15 E-value=0.7 Score=30.04 Aligned_cols=17 Identities=41% Similarity=1.024 Sum_probs=11.7
Q ss_pred ccCCCCCCCCCCCCCCC
Q 022223 4 SCSQCGNNGHNSRTCAE 20 (300)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~ 20 (300)
+|-.||..||-+|.|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 56677777777777763
No 69
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=78.94 E-value=1 Score=29.22 Aligned_cols=17 Identities=35% Similarity=0.880 Sum_probs=14.9
Q ss_pred ccCCCCCCCCCCCCCCC
Q 022223 4 SCSQCGNNGHNSRTCAE 20 (300)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~ 20 (300)
.|-.||..||-+|.|++
T Consensus 21 ~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 21 VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TCSSCCCTTGGGGTTCC
T ss_pred eEccCCCcCCccCcCcC
Confidence 57789999999999983
No 70
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=77.88 E-value=0.99 Score=31.45 Aligned_cols=16 Identities=38% Similarity=1.130 Sum_probs=8.1
Q ss_pred ccCCCCCCCCCCCCCC
Q 022223 4 SCSQCGNNGHNSRTCA 19 (300)
Q Consensus 4 ~CS~Cgn~GHNsRTC~ 19 (300)
+|-.||..||-+|.|+
T Consensus 14 ~C~~Cg~~GH~a~~C~ 29 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCR 29 (55)
T ss_dssp BCTTTCCBSSCGGGCS
T ss_pred ceeeeCCCCcChhhcC
Confidence 4555555555555553
No 71
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=77.74 E-value=1.1 Score=32.20 Aligned_cols=21 Identities=29% Similarity=0.748 Sum_probs=18.5
Q ss_pred CCCccCCCCCCCCCCCCCCCC
Q 022223 1 MSRSCSQCGNNGHNSRTCAEA 21 (300)
Q Consensus 1 m~R~CS~Cgn~GHNsRTC~~~ 21 (300)
+..+|-.||..||-+|.|+..
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTT
T ss_pred CCCcccccCCCCeehhhCcCC
Confidence 457899999999999999964
No 72
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=76.53 E-value=1.2 Score=30.60 Aligned_cols=18 Identities=39% Similarity=1.041 Sum_probs=15.6
Q ss_pred CccCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAE 20 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (300)
.+|-.||..||-+|.|+.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 578999999999999985
No 73
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=75.96 E-value=1.2 Score=29.18 Aligned_cols=15 Identities=33% Similarity=0.946 Sum_probs=13.8
Q ss_pred cCCCCCCCCCCCCCC
Q 022223 5 CSQCGNNGHNSRTCA 19 (300)
Q Consensus 5 CS~Cgn~GHNsRTC~ 19 (300)
|-.||..||-+|.|+
T Consensus 24 C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 24 CWNCGSKEHRFAQCP 38 (39)
T ss_dssp CTTTCCSSSCTTTSC
T ss_pred cccCCCCCCccCcCc
Confidence 668999999999998
No 74
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.35 E-value=6.7 Score=36.22 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=34.3
Q ss_pred CccCHHHHHHHHHHHHHcC--CCCHHhHhhh-hcCCCCHHHHHHHHH
Q 022223 93 VPWTEDEHRLFLLGLQKVG--KGDWRGISRN-FVKTRTPTQVASHAQ 136 (300)
Q Consensus 93 ~~WTeEEh~lFLegLekyG--kGdWk~IAr~-~V~TRT~~QVrSHAQ 136 (300)
+.||+.|-+.|+.+|.+|| .++|..|.++ -+..|+...++.-++
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~ 50 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD 50 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 4699999999999999999 4689999642 345688877774443
No 75
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=74.32 E-value=1.4 Score=30.28 Aligned_cols=19 Identities=37% Similarity=0.952 Sum_probs=16.5
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAEA 21 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (300)
..|-.||..||-+|.|+..
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 3689999999999999953
No 76
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=73.58 E-value=1.4 Score=30.64 Aligned_cols=19 Identities=37% Similarity=1.092 Sum_probs=16.7
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAEA 21 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (300)
..|-.||..||-+|.|+..
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 4689999999999999953
No 77
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=70.98 E-value=0.85 Score=32.32 Aligned_cols=20 Identities=40% Similarity=0.979 Sum_probs=0.0
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 022223 2 SRSCSQCGNNGHNSRTCAEA 21 (300)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~~~ 21 (300)
+++|-.||..||-+|.|+..
T Consensus 1 G~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 1 GGSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp --------------------
T ss_pred CCccccCCCCCcCHhhCcCC
Confidence 46788999999999999854
No 78
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=69.38 E-value=2.6 Score=29.76 Aligned_cols=20 Identities=20% Similarity=0.564 Sum_probs=17.7
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAEAG 22 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (300)
..|-.||..||-+|.|+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCTT
T ss_pred cceeECCCCCCccCcCCCcc
Confidence 67999999999999999653
No 79
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=64.25 E-value=3.4 Score=31.80 Aligned_cols=20 Identities=35% Similarity=0.803 Sum_probs=17.9
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAEAG 22 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (300)
..|-.||..||=+|.|+...
T Consensus 47 ~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSCC
T ss_pred CeecccCCCCcCcccCCccc
Confidence 57999999999999999754
No 80
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.55 E-value=3.6 Score=29.65 Aligned_cols=18 Identities=28% Similarity=0.826 Sum_probs=13.6
Q ss_pred CccCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAE 20 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (300)
.+|-.||..||-+|.|+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 467778888888888873
No 81
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.10 E-value=3.7 Score=29.61 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=16.9
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAEA 21 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (300)
++|-.||..||-+|.|+..
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGG
T ss_pred CccCCcCCcCCccCcCCCc
Confidence 5788999999999999964
No 82
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=60.89 E-value=3.8 Score=30.82 Aligned_cols=16 Identities=31% Similarity=0.993 Sum_probs=7.8
Q ss_pred ccCCCCCCCCCCCCCC
Q 022223 4 SCSQCGNNGHNSRTCA 19 (300)
Q Consensus 4 ~CS~Cgn~GHNsRTC~ 19 (300)
+|-.||..||-+|.|+
T Consensus 26 ~C~~Cg~~GH~a~~C~ 41 (74)
T 2li8_A 26 RCYNCGGLDHHAKECK 41 (74)
T ss_dssp CCTTTCCSSSCTTTCS
T ss_pred cccccCCcCcCcccCC
Confidence 3444555555555444
No 83
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=60.47 E-value=4.3 Score=30.51 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=16.7
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAEA 21 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (300)
+.|-.||..||-+|.|+..
T Consensus 47 ~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 47 KKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp CCCTTTCCTTSCGGGCTTG
T ss_pred CccCCcCCcCCccCcCcCC
Confidence 4688999999999999964
No 84
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=57.57 E-value=4.1 Score=34.02 Aligned_cols=18 Identities=28% Similarity=0.826 Sum_probs=16.4
Q ss_pred CccCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAE 20 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (300)
.+|-.||..||-+|.|+.
T Consensus 98 ~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CCCTTTCCSSCCGGGCCS
T ss_pred CcccEeCCccchhhhCCC
Confidence 369999999999999995
No 85
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=55.41 E-value=6.1 Score=31.34 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=16.4
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAEAG 22 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (300)
..|-.||..||-+|.|+...
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSIW 84 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCST
T ss_pred ccCCCCCcCCcchhhCCCcc
Confidence 46888999999999998643
No 86
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=53.68 E-value=4.7 Score=31.02 Aligned_cols=19 Identities=21% Similarity=0.684 Sum_probs=16.5
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAEA 21 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (300)
..|-.||..||-+|.|++.
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 4799999999999999953
No 87
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.51 E-value=7.1 Score=28.16 Aligned_cols=20 Identities=30% Similarity=0.871 Sum_probs=17.4
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 022223 2 SRSCSQCGNNGHNSRTCAEA 21 (300)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~~~ 21 (300)
...|=-||.-||-.+-|++.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 35799999999999999954
No 88
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=48.69 E-value=19 Score=28.63 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=24.5
Q ss_pred CCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022223 113 GDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 113 GdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~ 144 (300)
+.|+.|+ ..++--...+++.||.||+.....
T Consensus 71 ~~W~~Va-~~lg~~~~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 71 QQWSMVA-QRLQISDYQQLESIYFRILLPYER 101 (116)
T ss_dssp TCHHHHH-HHHTSCCTTHHHHHHHHHHSHHHH
T ss_pred CcHHHHH-HHhCCChHHHHHHHHHHHHHHHHH
Confidence 4899999 566665589999999999766554
No 89
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.88 E-value=42 Score=26.92 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=24.4
Q ss_pred CCHHhHhhhhcCCCC----HHHHHHHHHHHHHHhhhcc
Q 022223 113 GDWRGISRNFVKTRT----PTQVASHAQKYFLRRFNQN 146 (300)
Q Consensus 113 GdWk~IAr~~V~TRT----~~QVrSHAQKYF~r~~~~~ 146 (300)
+.|+.|++ .++-.. ..+++.||+||+.......
T Consensus 64 k~W~~V~~-~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 64 RKWTKIAT-KMGFAPGKAVGSHIRGHYERILNPYNLFL 100 (122)
T ss_dssp TTHHHHHH-HTTCCSSSHHHHHHHHHHHHTHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHHHH
Confidence 58999995 554422 4689999999988877654
No 90
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=45.84 E-value=11 Score=29.90 Aligned_cols=18 Identities=28% Similarity=0.922 Sum_probs=12.8
Q ss_pred CccCCCCCCCCCCCCCCC
Q 022223 3 RSCSQCGNNGHNSRTCAE 20 (300)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (300)
+.|-.||..||.+|.|+.
T Consensus 5 ~~C~~C~~~GH~~~~Cp~ 22 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPH 22 (124)
T ss_dssp SCCSSCSSSSCCTTTTTS
T ss_pred CcccCCCCCCcCcccCcC
Confidence 457777777777777764
No 91
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=38.58 E-value=60 Score=25.01 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=23.6
Q ss_pred CCHHhHhhhhcCCCC----HHHHHHHHHHHHHHhhhc
Q 022223 113 GDWRGISRNFVKTRT----PTQVASHAQKYFLRRFNQ 145 (300)
Q Consensus 113 GdWk~IAr~~V~TRT----~~QVrSHAQKYF~r~~~~ 145 (300)
+.|+.|++ .++--. ..+++.||.||+......
T Consensus 66 ~~W~~va~-~lg~~~~~~~~~~lk~~Y~k~L~~yE~~ 101 (107)
T 2lm1_A 66 RKWAKVAN-RMQYPSSKSVGATLKAHYERILHPFEVY 101 (107)
T ss_dssp TTHHHHHH-HTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 47999995 555432 578999999998776654
No 92
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=37.61 E-value=40 Score=26.77 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=23.5
Q ss_pred CCHHhHhhhhcCCCC----HHHHHHHHHHHHHHhhhc
Q 022223 113 GDWRGISRNFVKTRT----PTQVASHAQKYFLRRFNQ 145 (300)
Q Consensus 113 GdWk~IAr~~V~TRT----~~QVrSHAQKYF~r~~~~ 145 (300)
+.|+.|++ .++--. ..+++.||.||+......
T Consensus 62 ~~W~~Va~-~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~ 97 (117)
T 2jrz_A 62 RRWARVAQ-RLNYPPGKNIGSLLRSHYERIVYPYEMY 97 (117)
T ss_dssp TTHHHHHH-HTTCCTTCTHHHHHHHHHHHTTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 47999995 554432 678999999997766654
No 93
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=33.87 E-value=60 Score=26.00 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCHHhHhhhhcCCCC----HHHHHHHHHHHHHHhhhc
Q 022223 113 GDWRGISRNFVKTRT----PTQVASHAQKYFLRRFNQ 145 (300)
Q Consensus 113 GdWk~IAr~~V~TRT----~~QVrSHAQKYF~r~~~~ 145 (300)
+.|+.|++ .++--+ ..+++.||.||+......
T Consensus 73 ~~W~~Va~-~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 73 KKWRELAT-NLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp TCHHHHHH-HTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 48999995 555433 468999999998777654
No 94
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=33.16 E-value=28 Score=28.34 Aligned_cols=33 Identities=9% Similarity=0.300 Sum_probs=24.1
Q ss_pred CCHHhHhhhhcCC-C----CHHHHHHHHHHHHHHhhhcc
Q 022223 113 GDWRGISRNFVKT-R----TPTQVASHAQKYFLRRFNQN 146 (300)
Q Consensus 113 GdWk~IAr~~V~T-R----T~~QVrSHAQKYF~r~~~~~ 146 (300)
+.|+.|++ -++- . ...+++.||.||+.......
T Consensus 64 k~W~~Va~-~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~~~ 101 (121)
T 2rq5_A 64 KKWNKLAD-MLRIPKTAQDRLAKLQEAYCQYLLSYDSLS 101 (121)
T ss_dssp TCHHHHHH-HTCCCTTCSSHHHHHHHHHHTTHHHHHHCC
T ss_pred CcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHhHHHHCcC
Confidence 58999995 4432 2 35789999999988877543
No 95
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=32.74 E-value=37 Score=27.52 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=25.8
Q ss_pred CCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhhc
Q 022223 113 GDWRGISRNFVKTRTPTQVASHAQKYFLRRFNQ 145 (300)
Q Consensus 113 GdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~~ 145 (300)
+.|+.|+ .-++--...+++.||.||+......
T Consensus 70 k~W~~Va-~~lg~~~~~~Lr~~Y~k~L~~yE~~ 101 (123)
T 1kkx_A 70 QQWSMVA-QRLQISDYQQLESIYFRILLPYERH 101 (123)
T ss_dssp HHHHHHH-HHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHCCChHHHHHHHHHHHHHHHHHH
Confidence 4799999 4666555999999999998887753
No 96
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=32.23 E-value=26 Score=27.24 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=21.9
Q ss_pred CCHHhHhhhhcC-----CCCHHHHHHHHHHHHHHhhh
Q 022223 113 GDWRGISRNFVK-----TRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 113 GdWk~IAr~~V~-----TRT~~QVrSHAQKYF~r~~~ 144 (300)
+.|+.|++ .++ |-...+++.||.+|+.....
T Consensus 55 ~~W~~Va~-~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~ 90 (107)
T 1ig6_A 55 RQWKHIYD-ELGGNPGSTSAATCTRRHYERLILPYER 90 (107)
T ss_dssp TTHHHHHH-HHTCCTTCTTTTTTHHHHHHHHTTTTHH
T ss_pred CcHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 48999995 444 22347899999999665543
No 97
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=31.26 E-value=63 Score=25.91 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=24.3
Q ss_pred CCHHhHhhhhcCC-C----CHHHHHHHHHHHHHHhhhcc
Q 022223 113 GDWRGISRNFVKT-R----TPTQVASHAQKYFLRRFNQN 146 (300)
Q Consensus 113 GdWk~IAr~~V~T-R----T~~QVrSHAQKYF~r~~~~~ 146 (300)
+.|+.|++ .++- . ...+++.||.+|+.......
T Consensus 74 k~W~~Va~-~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~ 111 (128)
T 1c20_A 74 KLWQEIIK-GLHLPSSITSAAFTLRTQYMKYLYPYECEK 111 (128)
T ss_dssp TTHHHHHH-HTCCCSSCCSHHHHHHHHHHHHTHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 48999995 4442 2 26799999999988777554
No 98
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=29.93 E-value=61 Score=25.70 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=36.8
Q ss_pred ccccCCCccCHHH-----------HHHHHHHHHHcCC----------CCHHhHhhhhcCCCCHHHHHHHHHHHHHHhh
Q 022223 87 RERKRGVPWTEDE-----------HRLFLLGLQKVGK----------GDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (300)
Q Consensus 87 ~~rKkg~~WTeEE-----------h~lFLegLekyGk----------GdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~ 143 (300)
.+.-++..||.|+ ..-++..|+..|. |+-+ +..+|+...|...-|.++|-.-.
T Consensus 8 ~~~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniK----NVaKtanK~qLiaAY~~lfE~~~ 81 (88)
T 2lc3_A 8 KENGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNK----SIRKNRNCSQLIAAYKDFCEHGT 81 (88)
T ss_dssp HCSCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHH----HHHHHSCHHHHHHHHHHHHHHTC
T ss_pred cccCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHH----HHHhcCcHHHHHHHHHHHHhccc
Confidence 3455678899999 3456667777774 3344 44468999999988887776544
No 99
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=29.42 E-value=31 Score=28.40 Aligned_cols=26 Identities=38% Similarity=0.690 Sum_probs=21.5
Q ss_pred CCccCHHHH-HHHHHHHHHcCCCCHHh
Q 022223 92 GVPWTEDEH-RLFLLGLQKVGKGDWRG 117 (300)
Q Consensus 92 g~~WTeEEh-~lFLegLekyGkGdWk~ 117 (300)
...|||||- +++|||++.--..+|+.
T Consensus 48 ~~~~TE~EF~~LLLEA~~~sSsS~W~~ 74 (125)
T 3o2i_A 48 SEYWTEDEFYNLLLEAFQRSSASDWHL 74 (125)
T ss_dssp SSCCCHHHHHHHHHHHHTTSCSCCHHH
T ss_pred cccccHHHHHHHHHHHHHhccCCcHHH
Confidence 347999996 67889999888889984
No 100
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=25.28 E-value=64 Score=24.38 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=21.4
Q ss_pred CCHHhHhhhhcCC-C---CHHHHHHHHHHHHHHhh
Q 022223 113 GDWRGISRNFVKT-R---TPTQVASHAQKYFLRRF 143 (300)
Q Consensus 113 GdWk~IAr~~V~T-R---T~~QVrSHAQKYF~r~~ 143 (300)
+.|+.|++ .++- . ...+++.|++||+....
T Consensus 58 ~~W~~v~~-~lg~~~~~~~~~~Lk~~Y~k~L~~yE 91 (96)
T 2jxj_A 58 KKWSKVGS-RLGYLPGKGTGSLLKSHYERILYPYE 91 (96)
T ss_dssp TTHHHHHH-HHTCCSCSCHHHHHHHHHTTTTHHHH
T ss_pred CcHHHHHH-HhCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 58999995 4443 2 25689999998876554
No 101
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=24.97 E-value=1.5e+02 Score=20.33 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=33.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022223 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 94 ~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~ 144 (300)
.+|+.|.+.|.. + ..|. ..+.|| +.++ -+...|+.|-.+-+.++..
T Consensus 16 ~L~~~e~~vl~l-~-~~g~-s~~eIA-~~l~-is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGL-PNKSIA-YDLD-ISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTC-CHHHHH-HHTT-SCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHH-H-HcCC-CHHHHH-HHHC-cCHHHHHHHHHHHHHHHcC
Confidence 378888888776 4 5666 899999 5665 5888888887666665553
No 102
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=23.69 E-value=14 Score=23.45 Aligned_cols=17 Identities=53% Similarity=0.911 Sum_probs=11.1
Q ss_pred cCCccccCCCccCHHHH
Q 022223 84 GRSRERKRGVPWTEDEH 100 (300)
Q Consensus 84 ~~~~~rKkg~~WTeEEh 100 (300)
.+++.||+-..|.++|+
T Consensus 3 rrrrprkrplewdedee 19 (28)
T 3ukw_C 3 RRRRPRKRPLEWDEDEE 19 (28)
T ss_dssp ----CCCCCCCCCGGGS
T ss_pred cccccccCCcccccccC
Confidence 46678888899998875
No 103
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=22.94 E-value=85 Score=25.87 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCHHhHhhhhcCC-C----CHHHHHHHHHHHHHHhhhc
Q 022223 113 GDWRGISRNFVKT-R----TPTQVASHAQKYFLRRFNQ 145 (300)
Q Consensus 113 GdWk~IAr~~V~T-R----T~~QVrSHAQKYF~r~~~~ 145 (300)
+.|+.|++ -++- . ...+++.||.||+......
T Consensus 86 ~~W~~Va~-~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 86 KLWREITK-GLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp TCHHHHHH-HTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred CcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 58999995 4443 2 2578999999997776654
No 104
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.86 E-value=2e+02 Score=19.26 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=35.2
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022223 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~ 144 (300)
...+|+.|.+.|.. + ..|. ..+.|| ..++ -+..-|+.|-.+-+.++..
T Consensus 9 ~~~L~~~e~~il~~-~-~~g~-s~~eIA-~~l~-is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFEL-L-VQDK-TTKEIA-SELF-ISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHH-H-TTTC-CHHHHH-HHHT-SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHH-H-HcCC-CHHHHH-HHHC-CCHHHHHHHHHHHHHHHCC
Confidence 34589999888877 4 5666 899999 5666 4788888887766666553
No 105
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.43 E-value=2e+02 Score=20.56 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=34.8
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 022223 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (300)
Q Consensus 94 ~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~ 144 (300)
.+|+.|.+.|.. + ..|. ..+.|| +.++ -+..-|+.|-++-+.++..
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~-s~~eIA-~~l~-is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGL-PNKMIA-RRLD-ITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTC-CHHHHH-HHHT-SCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHH-H-HcCC-CHHHHH-HHHC-cCHHHHHHHHHHHHHHHcC
Confidence 589999888877 4 5776 899999 5666 5788888887766666554
Done!