Query 022224
Match_columns 300
No_of_seqs 202 out of 407
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1348 Asparaginyl peptidases 100.0 2E-107 5E-112 778.0 21.6 247 33-286 26-272 (477)
2 PF01650 Peptidase_C13: Peptid 100.0 1E-80 2.2E-85 577.0 21.6 215 60-284 1-215 (256)
3 KOG1349 Gpi-anchor transamidas 100.0 4.5E-65 9.7E-70 469.3 16.7 228 57-295 26-255 (309)
4 COG5206 GPI8 Glycosylphosphati 100.0 1.3E-56 2.8E-61 416.4 16.9 215 58-282 27-243 (382)
5 PF00656 Peptidase_C14: Caspas 99.2 5.7E-11 1.2E-15 105.5 7.7 161 60-281 1-203 (248)
6 KOG1546 Metacaspase involved i 98.7 2E-07 4.3E-12 90.0 11.2 132 53-227 57-211 (362)
7 smart00115 CASc Caspase, inter 96.5 0.059 1.3E-06 49.7 12.9 119 58-223 7-129 (241)
8 cd00032 CASc Caspase, interleu 96.3 0.062 1.4E-06 49.4 11.8 120 58-225 8-132 (243)
9 PF14538 Raptor_N: Raptor N-te 94.3 0.046 1E-06 47.9 3.7 72 138-228 71-152 (154)
10 PF12770 CHAT: CHAT domain 90.7 0.24 5.2E-06 45.2 3.4 68 132-223 122-201 (287)
11 COG4249 Uncharacterized protei 74.9 3.8 8.2E-05 41.0 4.2 60 167-230 132-207 (380)
12 KOG1017 Predicted uracil phosp 74.1 3.2 6.9E-05 38.8 3.2 23 79-101 204-226 (267)
13 PF03568 Peptidase_C50: Peptid 58.9 9.3 0.0002 37.8 3.3 43 168-227 308-350 (383)
14 PF11181 YflT: Heat induced st 57.9 15 0.00032 29.6 3.7 30 75-104 7-36 (103)
15 COG2143 Thioredoxin-related pr 57.5 1.5E+02 0.0033 26.9 10.4 44 163-213 113-156 (182)
16 KOG3332 N-acetylglucosaminyl p 53.3 30 0.00065 32.8 5.4 66 31-105 44-111 (247)
17 PRK10834 vancomycin high tempe 51.6 15 0.00032 34.7 3.2 39 58-99 80-118 (239)
18 PF02698 DUF218: DUF218 domain 46.6 21 0.00045 29.8 3.1 35 63-99 41-75 (155)
19 cd06259 YdcF-like YdcF-like. Y 46.4 18 0.00038 30.1 2.6 38 60-99 35-72 (150)
20 PF03415 Peptidase_C11: Clostr 39.7 27 0.00058 34.9 3.1 73 137-225 76-160 (397)
21 PRK10494 hypothetical protein; 38.9 28 0.00061 32.8 3.0 39 59-99 120-158 (259)
22 cd06183 cyt_b5_reduct_like Cyt 35.7 20 0.00043 31.6 1.3 35 59-100 200-234 (234)
23 KOG1552 Predicted alpha/beta h 34.6 38 0.00083 32.5 3.1 43 77-122 112-162 (258)
24 PF01364 Peptidase_C25: Peptid 33.2 40 0.00086 32.8 3.1 47 170-225 239-285 (378)
25 PF14681 UPRTase: Uracil phosp 31.9 34 0.00074 30.9 2.2 23 79-101 136-158 (207)
26 TIGR02855 spore_yabG sporulati 30.4 66 0.0014 31.3 4.0 101 113-235 103-221 (283)
27 COG4566 TtrR Response regulato 30.4 50 0.0011 30.6 3.0 59 133-207 55-122 (202)
28 PF10686 DUF2493: Protein of u 29.7 53 0.0012 25.1 2.7 21 62-82 5-25 (71)
29 TIGR01689 EcbF-BcbF capsule bi 28.5 96 0.0021 26.3 4.2 41 59-99 39-85 (126)
30 PF00233 PDEase_I: 3'5'-cyclic 28.1 34 0.00074 31.6 1.6 23 71-93 1-24 (237)
31 COG5155 ESP1 Separase, a prote 26.3 38 0.00083 38.5 1.8 43 168-227 1489-1531(1622)
32 PF05582 Peptidase_U57: YabG p 26.2 56 0.0012 31.8 2.7 101 113-235 104-222 (287)
33 PRK10629 EnvZ/OmpR regulon mod 24.6 1.3E+02 0.0029 25.6 4.4 36 60-99 35-71 (127)
34 COG0657 Aes Esterase/lipase [L 24.4 83 0.0018 29.2 3.5 25 76-100 129-157 (312)
35 PLN02541 uracil phosphoribosyl 23.9 85 0.0018 29.6 3.4 23 79-101 172-194 (244)
36 PRK10649 hypothetical protein; 23.4 45 0.00097 35.0 1.6 17 165-181 449-465 (577)
37 KOG1387 Glycosyltransferase [C 23.3 79 0.0017 32.2 3.2 33 134-175 82-115 (465)
38 PF00691 OmpA: OmpA family; I 22.3 1.4E+02 0.0031 22.6 4.0 25 80-104 56-80 (97)
39 KOG1654 Microtubule-associated 22.3 83 0.0018 26.8 2.7 35 136-181 52-86 (116)
40 PF06866 DUF1256: Protein of u 22.0 1.1E+02 0.0024 27.4 3.6 31 191-222 67-97 (163)
41 cd06212 monooxygenase_like The 21.8 58 0.0013 28.9 1.8 31 61-99 198-228 (232)
42 TIGR02841 spore_YyaC putative 21.7 98 0.0021 27.2 3.1 31 191-222 43-73 (140)
43 COG2194 Predicted membrane-ass 21.7 47 0.001 35.0 1.3 17 164-180 440-456 (555)
44 PF10116 Host_attach: Protein 21.5 1.3E+02 0.0028 25.2 3.7 38 191-228 72-109 (138)
45 COG2949 SanA Uncharacterized m 21.5 1.1E+02 0.0024 28.9 3.5 39 58-99 92-130 (235)
46 TIGR02911 sulfite_red_B sulfit 21.4 88 0.0019 28.9 3.0 40 60-107 190-229 (261)
47 KOG2091 Predicted member of gl 21.0 2.8E+02 0.0061 27.9 6.4 59 136-203 312-370 (392)
48 PF01972 SDH_sah: Serine dehyd 20.7 2.4E+02 0.0051 27.6 5.7 55 165-219 45-99 (285)
No 1
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-107 Score=777.97 Aligned_cols=247 Identities=72% Similarity=1.263 Sum_probs=235.3
Q ss_pred CChhhhhcccCCCCCCCcCCCCCCCCCeeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCC
Q 022224 33 LPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENP 112 (300)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np 112 (300)
+|+-...|++|. ++++.+|++||||||||+||||||||||||||||+||++|+|+||||||||||||+||+||
T Consensus 26 ~~~la~~~~~p~-------d~~ddggt~waVLVAGSngyyNYRHQADvcHAYqiLrkgGikeEnIvv~MYDDIA~~~~NP 98 (477)
T KOG1348|consen 26 LPLLASGFARPA-------DDDDDGGTRWAVLVAGSNGYYNYRHQADVCHAYQILRKGGIKEENIVVMMYDDIANNEENP 98 (477)
T ss_pred CccccccccCcC-------cCCccCceeEEEEEecCCcccchhhhhhHHHHHHHHHhcCCCchhEEEEEehhhhcCCCCC
Confidence 444456677762 2233348999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeeCCCCCcccCCcCccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCc
Q 022224 113 RPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYI 192 (300)
Q Consensus 113 ~pG~i~n~p~g~dvY~gv~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L 192 (300)
+||+|||+|+|+|||+||+|||||++||++||++||+|++++++||||||++|+|||||||||+||||||.|+||+++.|
T Consensus 99 rpG~iiN~P~G~DvY~GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pGvl~mP~~~~l 178 (477)
T KOG1348|consen 99 RPGVIINRPNGKDVYQGVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPGVLGMPTSPDL 178 (477)
T ss_pred CCceeecCCCchhhhcCCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCceEecCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCceEEEEeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCcccchhhHH
Q 022224 193 YADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLY 272 (300)
Q Consensus 193 ~a~dL~~~L~~M~~~~~YkklVf~vEAC~SGSmfe~llp~~~NV~~iTASn~~ESSys~yc~~~~~~~~~~~~tcLgD~f 272 (300)
+++||+++|++||+.++||+||||+|||||||||+++||+++||||+||||+.||||+||||+++|+||+++.|||||+|
T Consensus 179 ~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~tcLGDly 258 (477)
T KOG1348|consen 179 YAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYSTCLGDLY 258 (477)
T ss_pred hHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccch
Q 022224 273 SIAWMEDRYDNIYD 286 (300)
Q Consensus 273 Sv~wme~~~~~~~~ 286 (300)
||+||||||.|+..
T Consensus 259 SV~WmeDSd~hdL~ 272 (477)
T KOG1348|consen 259 SVNWMEDSDVHDLK 272 (477)
T ss_pred eeeeeccCccccch
Confidence 99999999988753
No 2
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=100.00 E-value=1e-80 Score=576.97 Aligned_cols=215 Identities=56% Similarity=0.997 Sum_probs=207.6
Q ss_pred eeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCccCCCCCC
Q 022224 60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDV 139 (300)
Q Consensus 60 ~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~iDY~g~~V 139 (300)
+||||||||++|+|||||||+|||||+||++|+|+||||||||||+||||+||+||+|||+|++.|+|+||+|||+|.+|
T Consensus 1 ~wAvlvagS~~~~NYRh~ad~~~~Y~~l~~~G~~~~~Iil~~~dd~a~~~~Np~~g~i~~~~~~~n~y~~~~iDY~g~~v 80 (256)
T PF01650_consen 1 NWAVLVAGSNGWFNYRHQADVCHAYQLLKRNGIPDENIILMMYDDIACNPRNPFPGKIFNDPDGTNVYKGVEIDYRGEDV 80 (256)
T ss_pred CEEEEEeccCCceeeeEehHHHHHHHHHHHcCCCCceEEEEecCCccchhhCCCCceEEeCCCcccccCCcccccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecc
Q 022224 140 TVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEA 219 (300)
Q Consensus 140 T~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~YkklVf~vEA 219 (300)
|+++|++||+|+++ + +++|||+++++|+|||||+|||++|+|+||+.+.|+++||+++|++|+++++||||||++||
T Consensus 81 ~~~~fl~vL~G~~~-~--~~~kvl~s~~~D~vfiy~~~HG~~~~l~~~~~~~l~~~~L~~~L~~m~~~~~y~~lv~~vea 157 (256)
T PF01650_consen 81 TPENFLNVLTGDKS-V--PSGKVLNSTENDNVFIYFTGHGGPGFLKFPDGEELTADDLADALDKMHEKKRYKKLVFVVEA 157 (256)
T ss_pred CHHHHHHHhcCCCC-C--CccccccCCCCCeEEEEEeccCCCCcccCCCcccccHHHHHHHHHHHHhhCCcceEEEEEec
Confidence 99999999999998 5 57899999999999999999999999999988889999999999999999999999999999
Q ss_pred ccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCcccchhhHHHHHHHHhhhhcc
Q 022224 220 CESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRYDNI 284 (300)
Q Consensus 220 C~SGSmfe~llp~~~NV~~iTASn~~ESSys~yc~~~~~~~~~~~~tcLgD~fSv~wme~~~~~~ 284 (300)
|||||||+. |++++||++||||+++|+||+|+|+ +++++|||||+||++||++++.++
T Consensus 158 C~SGs~~~~-L~~~~nv~~iTAa~~~e~Sy~~~~~------~~~~~~~l~d~fs~~~m~~~~~~~ 215 (256)
T PF01650_consen 158 CYSGSFFEG-LLKSPNVYVITAANADESSYGCYCS------DDSIGTYLGDAFSYNWMEDSDSHP 215 (256)
T ss_pred ccccchhhc-cCCCCCEEEEecCCccccccccccc------ccccccEeHHHHHHHhhhhhccCC
Confidence 999999999 6788999999999999999999993 258999999999999999999754
No 3
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-65 Score=469.33 Aligned_cols=228 Identities=29% Similarity=0.512 Sum_probs=209.3
Q ss_pred CCCeeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCC-CCcccC-CcCccC
Q 022224 57 VGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPH-GDDVYK-GVPKDY 134 (300)
Q Consensus 57 ~~~~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~-g~dvY~-gv~iDY 134 (300)
+.+||||||++||+|+||||.|||+.+|+.+||.||||+|||+|++||.|||+|||+||.+|++.+ +-|+|. .|++||
T Consensus 26 htnNwAVLv~tSRfwfNYRH~aNvl~~YrsvKrlGipDsqIilmladd~acn~RN~~pg~Vy~n~~~~~nlygd~vevdy 105 (309)
T KOG1349|consen 26 HTNNWAVLVCTSRFWFNYRHVANVLSVYRSVKRLGIPDSQIILMLADDMACNSRNPRPGTVYNNENHALNLYGDDVEVDY 105 (309)
T ss_pred ccCceEEEEecchhhhhHHHHHHHHHHHHHHHHcCCCcccEEEEeccccccccCCCCCcceeccccccccccCCcceeec
Confidence 579999999999999999999999999999999999999999999999999999999999999886 579996 678999
Q ss_pred CCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEE
Q 022224 135 TGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLV 214 (300)
Q Consensus 135 ~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~YkklV 214 (300)
+|.+||+|||+++|+|+.+.-+|+|+| |.+++.+|||||+|||||++||+|||.++|+.+||++++++|++++||++++
T Consensus 106 rgyevtvEnflr~LTgR~~~~tprSKr-lltDe~SNIlIYmtGHGgd~FlKFqd~eelts~dLadai~qm~e~~Ryneil 184 (309)
T KOG1349|consen 106 RGYEVTVENFLRVLTGRHPNNTPRSKR-LLTDEGSNILIYLTGHGGDGFLKFQDAEELTSDDLADAIQQMWEKKRYNEIL 184 (309)
T ss_pred ccchhHHHHHHHHHcCCCCCCCchhhh-hcccCCCcEEEEEccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEE
Confidence 999999999999999999999999877 5689999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCcccchhhHHHHHHHHhhhhccchhhHHHHhh
Q 022224 215 FYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRYDNIYDFIYFTLAT 294 (300)
Q Consensus 215 f~vEAC~SGSmfe~llp~~~NV~~iTASn~~ESSys~yc~~~~~~~~~~~~tcLgD~fSv~wme~~~~~~~~~~~~~~~~ 294 (300)
|++|||||.||++++. .|||+++++|.-+|+||+++.++ .+++++.|.|++.-++.-++.+.--.. +|-|
T Consensus 185 ~miDTCQaasly~~~~--sPNVLav~SS~~ge~SySh~~d~-------~Igv~vIDrftyy~l~flek~~~~~~~-~l~d 254 (309)
T KOG1349|consen 185 FMIDTCQAASLYERFY--SPNVLAVASSLVGEPSYSHHSDS-------DIGVYVIDRFTYYTLEFLEKGIGAKNR-TLQD 254 (309)
T ss_pred EEeeccchHHHHHhhc--CCCeEEEeecccCCcccccCCCc-------ccceeeeccchHHHHHHHHhcccchhh-hHHH
Confidence 9999999999999984 45999999999999999999764 899999999999888776654433333 4444
Q ss_pred h
Q 022224 295 F 295 (300)
Q Consensus 295 ~ 295 (300)
.
T Consensus 255 l 255 (309)
T KOG1349|consen 255 L 255 (309)
T ss_pred H
Confidence 3
No 4
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-56 Score=416.43 Aligned_cols=215 Identities=26% Similarity=0.490 Sum_probs=200.5
Q ss_pred CCeeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCC-CCcccC-CcCccCC
Q 022224 58 GTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPH-GDDVYK-GVPKDYT 135 (300)
Q Consensus 58 ~~~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~-g~dvY~-gv~iDY~ 135 (300)
.+|||||+++||+|+||||.|||+.+|..+|+.||||+|||+|.|||.|||.||-+||.+||+.+ +.++|. .++|||+
T Consensus 27 tnNwAvLlstSRfwfNYRHmANVl~~Yr~vkrlGipDsQIilm~~dd~acnsRnlfpgsvf~N~Dra~dlyge~~eidY~ 106 (382)
T COG5206 27 TNNWAVLLSTSRFWFNYRHMANVLVFYRVVKRLGIPDSQIILMSYDDQACNSRNLFPGSVFNNSDRAGDLYGEDSEIDYS 106 (382)
T ss_pred CCceEEEEecccceeehhhhhhHHHHHHHHHHcCCCcceEEEEechhhhhhhcccCCcccccCcccccceeCcccccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999876 567885 7899999
Q ss_pred CCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEE
Q 022224 136 GEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVF 215 (300)
Q Consensus 136 g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~YkklVf 215 (300)
|.+||+|+|.+.|+.+...-+|.|++ +..++++|||||++||||++||+|+|-++++++||++++.+|+++|||++++|
T Consensus 107 gyevTve~firLLt~r~~en~p~sKr-lltdE~SNIfIYmtGHGgd~FlKFqdaeemtseDladai~ql~~~kRyNeIlf 185 (382)
T COG5206 107 GYEVTVEVFIRLLTARSGENHPKSKR-LLTDESSNIFIYMTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEILF 185 (382)
T ss_pred cccchHHHHHHHHHhhccCCChhhhh-hcccccCcEEEEEccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEEE
Confidence 99999999999999988877787766 56789999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCcccchhhHHHHHHHHhhhh
Q 022224 216 YLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRYD 282 (300)
Q Consensus 216 ~vEAC~SGSmfe~llp~~~NV~~iTASn~~ESSys~yc~~~~~~~~~~~~tcLgD~fSv~wme~~~~ 282 (300)
++||||+.+|+++.. .|||+++.+|.-+||||+++.+. .++.-..|.|.+..++.-++
T Consensus 186 miDTCQAnaly~k~y--sPNvLavgsSeig~ssyShhsd~-------~IgvaVIDrFty~~l~fle~ 243 (382)
T COG5206 186 MIDTCQANALYDKSY--SPNVLAVGSSEIGQSSYSHHSDS-------LIGVAVIDRFTYFFLKFLEK 243 (382)
T ss_pred Eeeccccchhhhhcc--CCceEEEeccccCCccccccchh-------hhhHHHhhcchHHHHHHHhh
Confidence 999999999999875 35999999999999999999874 78889999999998876654
No 5
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=99.18 E-value=5.7e-11 Score=105.54 Aligned_cols=161 Identities=23% Similarity=0.297 Sum_probs=110.8
Q ss_pred eeEEEEeccCCCC-Cchh--hhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCccCCC
Q 022224 60 RWAVLLAGSNGFW-NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTG 136 (300)
Q Consensus 60 ~wAVLVagS~gw~-NYRH--qADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~iDY~g 136 (300)
+|||||+-+.+=. +-++ ..|+-.+.+.|++.|++.++| ++ ++
T Consensus 1 ~~AliIg~~~y~~~~~L~~~~~D~~~~~~~L~~~gf~~~~~-l~--~~-------------------------------- 45 (248)
T PF00656_consen 1 KRALIIGVNYYQNPPPLPGAVNDAEAMAEALEKLGFDVENI-LI--DN-------------------------------- 45 (248)
T ss_dssp EEEEEEEESSTSSTCHCTTHHHHHHHHHHHHHHTTEEEEEE-EE--ES--------------------------------
T ss_pred CEEEEEEeeCCCCCCCCCCHHHHHHHHHHHHHHcCCceeec-cc--cc--------------------------------
Confidence 5899999886411 2333 379999999999999999999 32 21
Q ss_pred CCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCC--C----cccCCCCCCcCHHH---HHHHHHHHHHc
Q 022224 137 EDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP--G----VLGMPTSRYIYADE---LIDVLKKKHAS 207 (300)
Q Consensus 137 ~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~--g----~l~fpd~~~L~a~d---L~~~L~~M~~~ 207 (300)
+|.+++.+.|+--. -...++|.++|||+|||.. + ...-.++..+..+. +.+.|..+..+
T Consensus 46 --~t~~~i~~~l~~l~----------~~~~~~D~~~~yfsGHG~~~~~~~~~~~~~~d~~~~~~d~~~~~~~~l~~~~~~ 113 (248)
T PF00656_consen 46 --ATRANILKALRELL----------QRAQPGDSVVFYFSGHGIQVDGEGGDEDSGYDGYLLPLDANLILDDELRDLLCK 113 (248)
T ss_dssp --SSHHHHHHHHHHHH----------TSGGTCSEEEEEEESEEETETTCCSTEEEETSSEEEEHHHHEEHHHHTSTTTTG
T ss_pred --hHHHHHHHHHhhhh----------ccCCCCCeeEEEEeccccccCCccCcccccccceeeecchhhhHHHHHhhhhhh
Confidence 78899999888211 1123789999999999965 1 11111333344444 67777776554
Q ss_pred C-CCc-eEEEEeccccccccccccC----------------------------CCCCcEEEEeecCCCCccccccCCCCC
Q 022224 208 G-NYK-SLVFYLEACESGSIFEGLL----------------------------PEGLNIYATTASNAEESSWGTYCPGEI 257 (300)
Q Consensus 208 ~-~Yk-klVf~vEAC~SGSmfe~ll----------------------------p~~~NV~~iTASn~~ESSys~yc~~~~ 257 (300)
. .-+ + +|++|+|+||.+..... +...++++++|+.++|.||.. ++
T Consensus 114 ~~~~~~k-~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~~~~s~e~--~~-- 188 (248)
T PF00656_consen 114 SLPKKPK-LFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPPEDPNRSDVPSPSGFIVLSASRPGQTSYED--SP-- 188 (248)
T ss_dssp GGTTS-E-EEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCCSSCCSEEEETTTSEEEEESSSTTBCEEEE--CT--
T ss_pred hccCCcc-EEeeccccCCccCCccccccccccccccccccccccccccccccccCCCCcEEEEeccccceeecc--cC--
Confidence 2 122 4 99999999999866311 123489999999999999998 21
Q ss_pred CCCCCCcccchhhHHHHHHHHhhh
Q 022224 258 PGPPPEYSTCLGDLYSIAWMEDRY 281 (300)
Q Consensus 258 ~~~~~~~~tcLgD~fSv~wme~~~ 281 (300)
.. |.+|+.++++--.
T Consensus 189 ----~~-----~g~ft~~L~~~L~ 203 (248)
T PF00656_consen 189 ----GS-----GGLFTYALLEALK 203 (248)
T ss_dssp ----TT-----EEHHHHHHHHHHH
T ss_pred ----cc-----CHHHHHHHHHHHH
Confidence 12 5789999887553
No 6
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2e-07 Score=90.04 Aligned_cols=132 Identities=22% Similarity=0.323 Sum_probs=90.0
Q ss_pred CCCCCCCeeEEEEeccCCCCCchhh-----hHHHHHHHHH-HhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcc
Q 022224 53 DDDSVGTRWAVLLAGSNGFWNYRHQ-----ADICHAYQLL-RKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDV 126 (300)
Q Consensus 53 ~~~~~~~~wAVLVagS~gw~NYRHq-----ADv~~~YqiL-k~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dv 126 (300)
-..-.+++-||||.-+ |-|=+++ .||-.|.+.| .+.||+.|+|.+|.-+| ++|. .
T Consensus 57 ~~~~~gkrrAvLiGIN--Y~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~-----~s~~-----~------- 117 (362)
T KOG1546|consen 57 YPQMAGKRRAVLIGIN--YPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTD-----ESPV-----R------- 117 (362)
T ss_pred CccccccceEEEEeec--CCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCC-----Cccc-----c-------
Confidence 3455688999999863 2222222 5899999988 67999999999886443 2220 0
Q ss_pred cCCcCccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCC-------CcccCC------C----C
Q 022224 127 YKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP-------GVLGMP------T----S 189 (300)
Q Consensus 127 Y~gv~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~-------g~l~fp------d----~ 189 (300)
-.|.+|+++.|+ +. |....++|-+|+=|||||+. ..-+|. | +
T Consensus 118 -----------~PT~~Nir~Al~---wL-------V~~aq~gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G 176 (362)
T KOG1546|consen 118 -----------IPTGKNIRRALR---WL-------VESAQPGDSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQG 176 (362)
T ss_pred -----------cCcHHHHHHHHH---HH-------HhcCCCCCEEEEEecCCCCcCCCCCCCCCCCCcceeecccccccc
Confidence 236788888888 22 22335789999999999982 122221 1 1
Q ss_pred CCcCHHHHHHHHHHHHHcCCCceEEEEecccccccccc
Q 022224 190 RYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (300)
Q Consensus 190 ~~L~a~dL~~~L~~M~~~~~YkklVf~vEAC~SGSmfe 227 (300)
..|++++.....+.+. .=-++-.++|+||||++.+
T Consensus 177 ~iIdDe~~r~lV~plp---~G~~lt~I~DSCHSGgliD 211 (362)
T KOG1546|consen 177 PIIDDEIFRILVRPLP---KGCKLTAISDSCHSGGLID 211 (362)
T ss_pred cccchHHHHHHHhccC---CCceEEEEeecccCCCccc
Confidence 2566677777777762 3358999999999999988
No 7
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=96.50 E-value=0.059 Score=49.74 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=77.4
Q ss_pred CCeeEEEEeccCCCC-Cchhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCccC
Q 022224 58 GTRWAVLLAGSNGFW-NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDY 134 (300)
Q Consensus 58 ~~~wAVLVagS~gw~-NYRHq--ADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~iDY 134 (300)
....|+||+-+++-. .=|.- .|+-.+-++|++.|+. +.+ +.
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~---V~~--~~------------------------------- 50 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYE---VHV--KN------------------------------- 50 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCE---EEE--ec-------------------------------
Confidence 477899998887521 11222 3899999999999992 222 11
Q ss_pred CCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCCceE
Q 022224 135 TGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNYKSL 213 (300)
Q Consensus 135 ~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~Ykkl 213 (300)
+.|.+.+.+.|..-. .+ .+-...|-+++||.+||..++|.-.|+..+.-++|.+.+..-. ..-.-|=.
T Consensus 51 ---dlt~~em~~~l~~~~-------~~-~~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~c~~L~~kPK 119 (241)
T smart00115 51 ---NLTAEEMLEELKEFA-------ER-PEHSDSDSFVCVLLSHGEEGGIYGTDHSPLPLDEIFSLFNGDNCPSLAGKPK 119 (241)
T ss_pred ---CCCHHHHHHHHHHHH-------hc-cccCCCCEEEEEEcCCCCCCeEEEecCCEEEHHHHHHhccccCChhhcCCCc
Confidence 357777777776311 01 1223468899999999999988877776677777777763211 01123446
Q ss_pred EEEecccccc
Q 022224 214 VFYLEACESG 223 (300)
Q Consensus 214 Vf~vEAC~SG 223 (300)
+|+++||...
T Consensus 120 lffiqACRg~ 129 (241)
T smart00115 120 LFFIQACRGD 129 (241)
T ss_pred EEEEeCCCCC
Confidence 8999999654
No 8
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=96.30 E-value=0.062 Score=49.43 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=80.4
Q ss_pred CCeeEEEEeccCCCC--Cchh--hhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCcc
Q 022224 58 GTRWAVLLAGSNGFW--NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKD 133 (300)
Q Consensus 58 ~~~wAVLVagS~gw~--NYRH--qADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~iD 133 (300)
....|+||+-+++-. .=|. ..|+-.+-++|++.|+. +.+.
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~---V~~~--------------------------------- 51 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYE---VEVK--------------------------------- 51 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCE---EEEe---------------------------------
Confidence 578999998887643 1232 36888999999999992 2221
Q ss_pred CCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCCce
Q 022224 134 YTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNYKS 212 (300)
Q Consensus 134 Y~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~Ykk 212 (300)
.++|.+.+.+.|..-.. + +....|-+++||.+||..+.|.-.|...+.-++|.+.|..-. .+-.-|=
T Consensus 52 ---~nlt~~~~~~~l~~f~~-------~--~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kP 119 (243)
T cd00032 52 ---NNLTAEEILEELKEFAS-------P--DHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKP 119 (243)
T ss_pred ---CCCCHHHHHHHHHHHHh-------c--cCCCCCeeEEEECCCCCCCEEEEecCcEEEHHHHHHhhccCCCccccCCC
Confidence 14577777777763210 1 234567899999999999988777755677777777765211 1112355
Q ss_pred EEEEecccccccc
Q 022224 213 LVFYLEACESGSI 225 (300)
Q Consensus 213 lVf~vEAC~SGSm 225 (300)
.+|+++||...-+
T Consensus 120 Kl~~iqACRg~~~ 132 (243)
T cd00032 120 KLFFIQACRGDEL 132 (243)
T ss_pred cEEEEECCCCCcC
Confidence 6899999986643
No 9
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=94.33 E-value=0.046 Score=47.94 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCC------cccCCCCC----CcCHHHHHHHHHHHHHc
Q 022224 138 DVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG------VLGMPTSR----YIYADELIDVLKKKHAS 207 (300)
Q Consensus 138 ~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g------~l~fpd~~----~L~a~dL~~~L~~M~~~ 207 (300)
+.|++.+.+.+..- | .+.+++.|.+-|.|||-|. +..|.+.- .++-.||.+.+..
T Consensus 71 dpt~e~~~~~~~~~---------R--~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~---- 135 (154)
T PF14538_consen 71 DPTVEDLKRLCQSL---------R--RNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGS---- 135 (154)
T ss_pred CCCHHHHHHHHHHH---------H--hhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCC----
Confidence 57888888877732 1 2344689999999999984 44444321 3777888777765
Q ss_pred CCCceEEEEeccccccccccc
Q 022224 208 GNYKSLVFYLEACESGSIFEG 228 (300)
Q Consensus 208 ~~YkklVf~vEAC~SGSmfe~ 228 (300)
-.++|.|+..||++++.
T Consensus 136 ----Psi~V~DC~~AG~il~~ 152 (154)
T PF14538_consen 136 ----PSIYVFDCSNAGSILNA 152 (154)
T ss_pred ----CEEEEEECCcHHHHHHh
Confidence 78999999999998875
No 10
>PF12770 CHAT: CHAT domain
Probab=90.69 E-value=0.24 Score=45.22 Aligned_cols=68 Identities=22% Similarity=0.365 Sum_probs=46.9
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCC-------cccCC-----CCCCcCHHHHHH
Q 022224 132 KDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG-------VLGMP-----TSRYIYADELID 199 (300)
Q Consensus 132 iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g-------~l~fp-----d~~~L~a~dL~~ 199 (300)
.-..+.+.|.+++++.|... .-=.|.|+|||... .|.+. +...|++.||.+
T Consensus 122 ~~~~~~~at~~~l~~~l~~~-----------------~~~ilH~a~Hg~~~~~~~~~~~l~l~~~~~~~~~~l~~~~l~~ 184 (287)
T PF12770_consen 122 RVLVGPEATKDALLEALERR-----------------GPDILHFAGHGTFDPDPPDQSGLVLSDESGQEDGLLSAEELAQ 184 (287)
T ss_pred eEeeccCCCHHHHHhhhccC-----------------CCCEEEEEcccccCCCCCCCCEEEEeccCCCCCcccCHHHHHh
Confidence 34567778888888888311 11268999999976 67775 345699999988
Q ss_pred HHHHHHHcCCCceEEEEecccccc
Q 022224 200 VLKKKHASGNYKSLVFYLEACESG 223 (300)
Q Consensus 200 ~L~~M~~~~~YkklVf~vEAC~SG 223 (300)
++- .+ --++++.||+||
T Consensus 185 -l~l---~~---~~lVvLsaC~s~ 201 (287)
T PF12770_consen 185 -LDL---RG---PRLVVLSACESA 201 (287)
T ss_pred -hcC---CC---CCEEEecCcCCc
Confidence 321 11 336678999999
No 11
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=74.89 E-value=3.8 Score=41.01 Aligned_cols=60 Identities=27% Similarity=0.470 Sum_probs=37.8
Q ss_pred CCCeEEEEEecCCCCC-------cccCCCC---------CCcCHHHHHHHHHHHHHcCCCceEEEEeccccccccccccC
Q 022224 167 PNDHIFIFYSDHGGPG-------VLGMPTS---------RYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL 230 (300)
Q Consensus 167 ~~D~VFIY~tgHGg~g-------~l~fpd~---------~~L~a~dL~~~L~~M~~~~~YkklVf~vEAC~SGSmfe~ll 230 (300)
+.|++++||+|||... ++.|-.. .-+... .....+|. ..-++.+..+++|++|.+|....
T Consensus 132 ~~d~~~~~fsG~g~~~~~d~~~~lia~~t~p~~~a~~~~~~~s~~---~~~~~~~~-~~~~~ql~~~d~~~~~~~~~~~~ 207 (380)
T COG4249 132 PADTILFFFSGHGATPGADGRAYLIAFDTRPGAVAYDGEGGISPY---SVAQALHL-SEPGNQLVDLDACVRGDVFKATA 207 (380)
T ss_pred hhhhhhheeeccccccCCCCceeEEeecCChhhhcccCCCcccHH---HHHHHHHh-ccCCceeehhhhhcchhhhcccc
Confidence 4799999999999962 2222111 112222 23333333 34566788999999999999754
No 12
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=74.05 E-value=3.2 Score=38.81 Aligned_cols=23 Identities=35% Similarity=0.746 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEe
Q 022224 79 DICHAYQLLRKGGLKDENIIVFM 101 (300)
Q Consensus 79 Dv~~~YqiLk~~GipdenIIlmm 101 (300)
-||.|-..||++|+||++||+..
T Consensus 204 TV~~Av~VL~EhgVp~s~IiL~s 226 (267)
T KOG1017|consen 204 TVCKAVEVLKEHGVPDSNIILVS 226 (267)
T ss_pred cHHHHHHHHHHcCCCcccEEEEE
Confidence 69999999999999999999974
No 13
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=58.88 E-value=9.3 Score=37.80 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=27.2
Q ss_pred CCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecccccccccc
Q 022224 168 NDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (300)
Q Consensus 168 ~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~YkklVf~vEAC~SGSmfe 227 (300)
+.++|| |.||||= ..|+..+++.+ + -+.-+.++=+|-||.+-.
T Consensus 308 ~~dlf~-Y~GHG~G-------~qy~~~~~i~~----~-----~~~~~~lL~GCsS~~l~~ 350 (383)
T PF03568_consen 308 SSDLFL-YCGHGSG-------EQYISGSTIQR----L-----DCCAVSLLMGCSSGRLKE 350 (383)
T ss_pred hCCeEE-EecCCcH-------HHhCCHhhhcc----c-----cccCceEEecCCcccccc
Confidence 345888 5699982 22455544432 2 234577788999998765
No 14
>PF11181 YflT: Heat induced stress protein YflT
Probab=57.91 E-value=15 Score=29.65 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHHhCCCCCCCEEEEeccc
Q 022224 75 RHQADICHAYQLLRKGGLKDENIIVFMYDD 104 (300)
Q Consensus 75 RHqADv~~~YqiLk~~GipdenIIlmmyDD 104 (300)
.=+..+.++-+-|++.|+..++|.|+..|+
T Consensus 7 ~~~~E~~~~I~~L~~~Gy~~ddI~Vva~d~ 36 (103)
T PF11181_consen 7 DNEEEALSAIEELKAQGYSEDDIYVVAKDK 36 (103)
T ss_pred CCHHHHHHHHHHHHHcCCCcccEEEEEcCc
Confidence 346788999999999999999999998653
No 15
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.51 E-value=1.5e+02 Score=26.95 Aligned_cols=44 Identities=32% Similarity=0.613 Sum_probs=33.1
Q ss_pred ccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceE
Q 022224 163 VDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSL 213 (300)
Q Consensus 163 L~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~Ykkl 213 (300)
++|+|+ +.|.||-|.+++..|. ++..+++..+|+... ++.|+++
T Consensus 113 vrstPt----fvFfdk~Gk~Il~lPG--Y~ppe~Fl~vlkYVa-~g~ykd~ 156 (182)
T COG2143 113 VRSTPT----FVFFDKTGKTILELPG--YMPPEQFLAVLKYVA-DGKYKDT 156 (182)
T ss_pred cccCce----EEEEcCCCCEEEecCC--CCCHHHHHHHHHHHH-HHHHhhh
Confidence 357776 4456788889999986 799999999999874 4566654
No 16
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=53.29 E-value=30 Score=32.83 Aligned_cols=66 Identities=20% Similarity=0.107 Sum_probs=43.0
Q ss_pred ccCChhhhhcccCCCCCCCcCCCCCCCCCeeEEEEeccCCCCCchhhhHHH--HHHHHHHhCCCCCCCEEEEecccc
Q 022224 31 LKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADIC--HAYQLLRKGGLKDENIIVFMYDDI 105 (300)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wAVLVagS~gw~NYRHqADv~--~~YqiLk~~GipdenIIlmmyDDi 105 (300)
+-=|.++..||.|.-. .-..+..|.=|++=|+| |+-++.-+- ..-+---..|+|.+|++++-+.+.
T Consensus 44 iAhpdDE~mFFsPtI~-------~L~~~~~~v~iLClSnG--N~dg~G~iR~kEL~ra~~~lgi~~s~v~~l~~~~f 111 (247)
T KOG3332|consen 44 IAHPDDESMFFSPTIL-------YLTSGACNVHILCLSNG--NADGLGKIREKELHRACAVLGIPLSNVVVLDTPFF 111 (247)
T ss_pred EeccCccccchhhHHH-------HHhcCCccEEEEEecCC--CccccchHHHHHHHHHHHHHCCchhheEEecCCcC
Confidence 3346667788876211 11235668888899999 888887664 222233348999999999965544
No 17
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=51.58 E-value=15 Score=34.69 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=28.5
Q ss_pred CCeeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022224 58 GTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 58 ~~~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIl 99 (300)
++.=.+||+|-++=..| ..+-.|.+.|.+.|||++.|++
T Consensus 80 gk~~~ilvSGg~~~~~~---~Ea~~M~~yLi~~GVp~e~Ii~ 118 (239)
T PRK10834 80 GKVNYLLLSGDNALQSY---NEPMTMRKDLIAAGVDPSDIVL 118 (239)
T ss_pred CCCCEEEEeCCCCCCCC---CHHHHHHHHHHHcCCCHHHEEe
Confidence 33445888987642222 3556699999999999999988
No 18
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=46.65 E-value=21 Score=29.83 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022224 63 VLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 63 VLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIl 99 (300)
||++|..+... ....+-.+-++|.+.|+|+++|++
T Consensus 41 il~SGg~~~~~--~~~ea~~~~~~l~~~gvp~~~I~~ 75 (155)
T PF02698_consen 41 ILFSGGYGHGD--GRSEAEAMRDYLIELGVPEERIIL 75 (155)
T ss_dssp EEEE--SSTTH--TS-HHHHHHHHHHHT---GGGEEE
T ss_pred EEECCCCCCCC--CCCHHHHHHHHHHhcccchheeEc
Confidence 78887665554 334555667788888999999988
No 19
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=46.40 E-value=18 Score=30.10 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=27.7
Q ss_pred eeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022224 60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 60 ~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIl 99 (300)
.--||++|..+....+ +.+-.+.+.|.+.|+|++.|++
T Consensus 35 ~~~ii~sGg~~~~~~~--~ea~~m~~~l~~~gv~~~~I~~ 72 (150)
T cd06259 35 APKLIVSGGQGPGEGY--SEAEAMARYLIELGVPAEAILL 72 (150)
T ss_pred CCEEEEcCCCCCCCCC--CHHHHHHHHHHHcCCCHHHeee
Confidence 4457778877655333 3455677999999999999887
No 20
>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification.; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.
Probab=39.71 E-value=27 Score=34.90 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCC---------cccCCC---CCCcCHHHHHHHHHHH
Q 022224 137 EDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG---------VLGMPT---SRYIYADELIDVLKKK 204 (300)
Q Consensus 137 ~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g---------~l~fpd---~~~L~a~dL~~~L~~M 204 (300)
+..+++.+..+|.= +.+.=|.++-.+-+.+||+-- -+++.+ +..|+-.||+++|+
T Consensus 76 nm~dp~tL~~fi~~-----------~~~~yPA~~y~LIlw~HG~Gw~~~~~~~~rg~~~D~~~~~~~l~i~el~~aL~-- 142 (397)
T PF03415_consen 76 NMGDPDTLSDFINW-----------AKENYPADRYGLILWDHGGGWLPASDSSTRGIGFDETSGGDYLSIPELAEALE-- 142 (397)
T ss_dssp -TTSHHHHHHHHHH-----------HHHHS-ECEEEEEEES-B-TT--TTGGG---EEEETTE---EE-HHHHHHHS---
T ss_pred CCCCHHHHHHHHHH-----------HHHhCCcccEEEEEEECCCCCCcCCCCCcceEecCCCChhhcccHHHHHHHHc--
Confidence 56778888887771 223346788888899999721 244433 24799999999999
Q ss_pred HHcCCCceEEEEecccccccc
Q 022224 205 HASGNYKSLVFYLEACESGSI 225 (300)
Q Consensus 205 ~~~~~YkklVf~vEAC~SGSm 225 (300)
..-+==++..|||.-|++
T Consensus 143 ---~~~~~d~I~FDaClM~~v 160 (397)
T PF03415_consen 143 ---GGPKFDFIGFDACLMGSV 160 (397)
T ss_dssp ----TT-EEEEEEESTT--BH
T ss_pred ---CCCCCcEEEECcccchhH
Confidence 122333667799999985
No 21
>PRK10494 hypothetical protein; Provisional
Probab=38.94 E-value=28 Score=32.77 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=29.6
Q ss_pred CeeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022224 59 TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 59 ~~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIl 99 (300)
..--||++|..+..+- .+.+-.+-+.|++.|+|++.|++
T Consensus 120 ~~~~ii~SGg~~~~~~--~sEA~~~~~~l~~lGVp~~~Ii~ 158 (259)
T PRK10494 120 PGAKLIFTGGAAKTNT--VSTAEVGARVAQSLGVPREDIIT 158 (259)
T ss_pred CCCEEEEECCCCCCCC--CCHHHHHHHHHHHcCCCHHHeee
Confidence 3456888987775542 35666778889999999999977
No 22
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=35.68 E-value=20 Score=31.58 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=27.0
Q ss_pred CeeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEE
Q 022224 59 TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVF 100 (300)
Q Consensus 59 ~~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIlm 100 (300)
..-.|.|+|+.++-+ -.+.+.|++.|+|++||.+|
T Consensus 200 ~~~~~~icGp~~~~~-------~~~~~~l~~~G~~~~~i~~~ 234 (234)
T cd06183 200 EDTLVLVCGPPPMIE-------GAVKGLLKELGYKKDNVFKF 234 (234)
T ss_pred CCeEEEEECCHHHHH-------HHHHHHHHHcCCCHHHEEeC
Confidence 345688899977642 16778889999999999875
No 23
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=34.63 E-value=38 Score=32.47 Aligned_cols=43 Identities=35% Similarity=0.546 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHh-CCCCCCCEEEEecc-------ccccCCCCCCCCeEeeCCC
Q 022224 77 QADICHAYQLLRK-GGLKDENIIVFMYD-------DIAFNEENPRPGVIINHPH 122 (300)
Q Consensus 77 qADv~~~YqiLk~-~GipdenIIlmmyD-------DiA~np~Np~pG~i~n~p~ 122 (300)
.+|+-++|+.||+ .| ++|+|||+-.- |.|+ |+|..|.|-+.|=
T Consensus 112 y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Las--r~~~~alVL~SPf 162 (258)
T KOG1552|consen 112 YADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLAS--RYPLAAVVLHSPF 162 (258)
T ss_pred hhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhh--cCCcceEEEeccc
Confidence 4899999999976 78 99999998532 2232 5566777777663
No 24
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=33.19 E-value=40 Score=32.78 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=23.0
Q ss_pred eEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecccccccc
Q 022224 170 HIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSI 225 (300)
Q Consensus 170 ~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~YkklVf~vEAC~SGSm 225 (300)
..+|.|.|||++... ..+.++.+++. .+. +..|--+++.-||+.|.+
T Consensus 239 ~~~v~y~GHG~~~~w---~~~~~~~~d~~----~l~--N~~~~p~~~s~~C~~g~f 285 (378)
T PF01364_consen 239 AGFVNYFGHGSPTSW---ADEDFTSSDIS----NLN--NKNKLPVVISAACYTGNF 285 (378)
T ss_dssp -SEEEEES-B-SSBB---TTT--BTTTGG----G-----TT---EEEEESSSTT-T
T ss_pred CeEEEEecCCchhhc---ccCcccHhHHH----Hhc--CCCCceEEEEeECCCcCC
Confidence 468899999998755 11223333322 221 223556778899999998
No 25
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=31.88 E-value=34 Score=30.94 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEe
Q 022224 79 DICHAYQLLRKGGLKDENIIVFM 101 (300)
Q Consensus 79 Dv~~~YqiLk~~GipdenIIlmm 101 (300)
.+|.+.+.|+++|+++++|+++.
T Consensus 136 s~~~ai~~L~~~G~~~~~I~~v~ 158 (207)
T PF14681_consen 136 SAIAAIEILKEHGVPEENIIIVS 158 (207)
T ss_dssp HHHHHHHHHHHTTG-GGEEEEEE
T ss_pred hHHHHHHHHHHcCCCcceEEEEE
Confidence 68999999999999999999985
No 26
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=30.36 E-value=66 Score=31.27 Aligned_cols=101 Identities=24% Similarity=0.431 Sum_probs=62.6
Q ss_pred CCCeEeeCCCCC--------cccCCcCccCCCCCC----CHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCC
Q 022224 113 RPGVIINHPHGD--------DVYKGVPKDYTGEDV----TVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180 (300)
Q Consensus 113 ~pG~i~n~p~g~--------dvY~gv~iDY~g~~V----T~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg 180 (300)
.||+|.+ -+|. ++|+-..++-.|.-+ -|+.+.+.|.- . .|+ | +-+|||=|
T Consensus 103 ~PGrVLH-iDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~------------~--~PD--I-lViTGHD~ 164 (283)
T TIGR02855 103 MPGRVLH-IDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEE------------V--RPD--I-LVITGHDA 164 (283)
T ss_pred CCCcEEe-ecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHH------------h--CCC--E-EEEeCchh
Confidence 4999887 4442 466644444445433 34555555551 1 222 3 34799965
Q ss_pred CCcccC----CC-CCCcCHHHHHHHHHHHHHcC-CCceEEEEeccccccccccccCCCCCc
Q 022224 181 PGVLGM----PT-SRYIYADELIDVLKKKHASG-NYKSLVFYLEACESGSIFEGLLPEGLN 235 (300)
Q Consensus 181 ~g~l~f----pd-~~~L~a~dL~~~L~~M~~~~-~YkklVf~vEAC~SGSmfe~llp~~~N 235 (300)
+++= .| ..|-.++.+.++.+...+.. .+-+|||+.-|||| -||.+|..+-|
T Consensus 165 --~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGACQS--~yEall~AGAN 221 (283)
T TIGR02855 165 --YSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGACQS--HFESLIRAGAN 221 (283)
T ss_pred --hhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcchhHH--HHHHHHHcCcc
Confidence 4432 22 24778899999999875544 56699999999996 56766644444
No 27
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=30.36 E-value=50 Score=30.59 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=38.4
Q ss_pred cCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCC---------CCcccCCCCCCcCHHHHHHHHHH
Q 022224 133 DYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG---------PGVLGMPTSRYIYADELIDVLKK 203 (300)
Q Consensus 133 DY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg---------~g~l~fpd~~~L~a~dL~~~L~~ 203 (300)
|-+-...+--.|++-|..... +-=.||+||||- .|.+-|=..+ +..++|.++++.
T Consensus 55 DvrMPg~sGlelq~~L~~~~~---------------~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP-~~~q~Lldav~~ 118 (202)
T COG4566 55 DVRMPGMSGLELQDRLAERGI---------------RLPVIFLTGHGDIPMAVQAMKAGAVDFLEKP-FSEQDLLDAVER 118 (202)
T ss_pred ecCCCCCchHHHHHHHHhcCC---------------CCCEEEEeCCCChHHHHHHHHcchhhHHhCC-CchHHHHHHHHH
Confidence 444444555667777764321 223588999998 3555555454 888999999988
Q ss_pred HHHc
Q 022224 204 KHAS 207 (300)
Q Consensus 204 M~~~ 207 (300)
..+.
T Consensus 119 Al~~ 122 (202)
T COG4566 119 ALAR 122 (202)
T ss_pred HHHH
Confidence 7653
No 28
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=29.71 E-value=53 Score=25.12 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=16.0
Q ss_pred EEEEeccCCCCCchhhhHHHH
Q 022224 62 AVLLAGSNGFWNYRHQADICH 82 (300)
Q Consensus 62 AVLVagS~gw~NYRHqADv~~ 82 (300)
-|||+||+.|.++..-.+++.
T Consensus 5 rVli~GgR~~~D~~~i~~~Ld 25 (71)
T PF10686_consen 5 RVLITGGRDWTDHELIWAALD 25 (71)
T ss_pred EEEEEECCccccHHHHHHHHH
Confidence 489999999998776555544
No 29
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=28.45 E-value=96 Score=26.30 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=30.1
Q ss_pred CeeEEEEeccCCCCCch------hhhHHHHHHHHHHhCCCCCCCEEE
Q 022224 59 TRWAVLLAGSNGFWNYR------HQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 59 ~~wAVLVagS~gw~NYR------HqADv~~~YqiLk~~GipdenIIl 99 (300)
+.+-|+++++|....+. ++...-...+.|+++|+|=++|++
T Consensus 39 ~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~ 85 (126)
T TIGR01689 39 LGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYV 85 (126)
T ss_pred CCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEe
Confidence 44669999999877655 222233567889999999999887
No 30
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=28.06 E-value=34 Score=31.55 Aligned_cols=23 Identities=48% Similarity=0.970 Sum_probs=18.5
Q ss_pred CCCchhhhHHH-HHHHHHHhCCCC
Q 022224 71 FWNYRHQADIC-HAYQLLRKGGLK 93 (300)
Q Consensus 71 w~NYRHqADv~-~~YqiLk~~Gip 93 (300)
|.|.+|.+||+ .+|.+|++.++.
T Consensus 1 yHN~~Ha~dV~q~~~~ll~~~~~~ 24 (237)
T PF00233_consen 1 YHNFRHAADVLQFVYYLLSNGGLR 24 (237)
T ss_dssp SSSHHHHHHHHHHHHHHHHHGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHccCcc
Confidence 78999999998 567777776653
No 31
>COG5155 ESP1 Separase, a protease involved in sister chromatid separation [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=26.29 E-value=38 Score=38.50 Aligned_cols=43 Identities=23% Similarity=0.566 Sum_probs=28.1
Q ss_pred CCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecccccccccc
Q 022224 168 NDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (300)
Q Consensus 168 ~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~YkklVf~vEAC~SGSmfe 227 (300)
+.++|+|| ||||- ..|+.+.||+.. ++- .+.++=+|.|+.|..
T Consensus 1489 g~d~flYf-GHGgG-------eQY~~s~ei~~~-------~~~--a~~~L~GCSS~al~~ 1531 (1622)
T COG5155 1489 GCDVFLYF-GHGGG-------EQYLKSSEIKKC-------GEG--ATMLLFGCSSVALLC 1531 (1622)
T ss_pred CCCEEEEE-ecCCc-------ceeeeHhhhhhh-------ccc--ceeEEecCcHHHHHH
Confidence 35588887 89982 236777776532 222 245577999998865
No 32
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=26.24 E-value=56 Score=31.81 Aligned_cols=101 Identities=30% Similarity=0.533 Sum_probs=60.7
Q ss_pred CCCeEeeCCCCC--------cccCCcCccCCCCCCC----HHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCC
Q 022224 113 RPGVIINHPHGD--------DVYKGVPKDYTGEDVT----VENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180 (300)
Q Consensus 113 ~pG~i~n~p~g~--------dvY~gv~iDY~g~~VT----~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg 180 (300)
.||+|.+ -+|. ++|+-..|+=.|.-+. |+.+.+.|.- -.|+ | +-+|||=|
T Consensus 104 ~PGkVLH-lDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~--------------~~PD--I-lViTGHD~ 165 (287)
T PF05582_consen 104 RPGKVLH-LDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEE--------------YRPD--I-LVITGHDG 165 (287)
T ss_pred CCCeEEE-ecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHH--------------cCCC--E-EEEeCchh
Confidence 7999887 3442 4666444555555444 3444444441 1222 3 34799966
Q ss_pred CCcccC----CC-CCCcCHHHHHHHHHHHHHc-CCCceEEEEeccccccccccccCCCCCc
Q 022224 181 PGVLGM----PT-SRYIYADELIDVLKKKHAS-GNYKSLVFYLEACESGSIFEGLLPEGLN 235 (300)
Q Consensus 181 ~g~l~f----pd-~~~L~a~dL~~~L~~M~~~-~~YkklVf~vEAC~SGSmfe~llp~~~N 235 (300)
+++= .+ ..|=.++.+.++.+...+- ..+-+|||+.-|||| -||.+|..+-|
T Consensus 166 --~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQS--~fEall~AGAN 222 (287)
T PF05582_consen 166 --YLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQS--HFEALLEAGAN 222 (287)
T ss_pred --hhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcchhHH--HHHHHHHcCcc
Confidence 3332 22 2366788899998887532 345689999999996 56766644444
No 33
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=24.59 E-value=1.3e+02 Score=25.61 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=27.2
Q ss_pred eeEEEEecc-CCCCCchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022224 60 RWAVLLAGS-NGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 60 ~wAVLVagS-~gw~NYRHqADv~~~YqiLk~~GipdenIIl 99 (300)
.-||=|+++ +|-.- .|...+||.|++.||+.+.|..
T Consensus 35 dpavQIs~~~~g~~~----~~~~~v~~~L~~~gI~~ksi~~ 71 (127)
T PRK10629 35 ESTLAIRAVHQGASL----PDGFYVYQHLDANGIHIKSITP 71 (127)
T ss_pred CceEEEecCCCCCcc----chHHHHHHHHHHCCCCcceEEe
Confidence 346777776 55322 7899999999999999888754
No 34
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=24.44 E-value=83 Score=29.25 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHhC----CCCCCCEEEE
Q 022224 76 HQADICHAYQLLRKG----GLKDENIIVF 100 (300)
Q Consensus 76 HqADv~~~YqiLk~~----GipdenIIlm 100 (300)
+-.|+..+|+.|+++ |++.+||+++
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v~ 157 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAVA 157 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEEE
Confidence 347889999999876 7999999998
No 35
>PLN02541 uracil phosphoribosyltransferase
Probab=23.94 E-value=85 Score=29.65 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEe
Q 022224 79 DICHAYQLLRKGGLKDENIIVFM 101 (300)
Q Consensus 79 Dv~~~YqiLk~~GipdenIIlmm 101 (300)
.++.+.+.|+++|.+.++|+++.
T Consensus 172 S~~~ai~~L~~~Gv~~~~I~~v~ 194 (244)
T PLN02541 172 TIVAAIDELVSRGASVEQIRVVC 194 (244)
T ss_pred HHHHHHHHHHHcCCCcccEEEEE
Confidence 58999999999999999999885
No 36
>PRK10649 hypothetical protein; Provisional
Probab=23.36 E-value=45 Score=35.03 Aligned_cols=17 Identities=24% Similarity=0.661 Sum_probs=13.9
Q ss_pred CCCCCeEEEEEecCCCC
Q 022224 165 SGPNDHIFIFYSDHGGP 181 (300)
Q Consensus 165 S~~~D~VFIY~tgHGg~ 181 (300)
...++.++||++|||..
T Consensus 449 ~~~~nt~iiy~SDHGe~ 465 (577)
T PRK10649 449 ATDPNGFLVYFSDHGEE 465 (577)
T ss_pred cCCCCeEEEEECCCCcc
Confidence 34578999999999975
No 37
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=23.32 E-value=79 Score=32.21 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=21.4
Q ss_pred CCCC-CCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEE
Q 022224 134 YTGE-DVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFY 175 (300)
Q Consensus 134 Y~g~-~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~ 175 (300)
|+|+ +||++++|+--+.+-. ++-+++.-.|||+
T Consensus 82 YsGD~n~t~~~IL~k~k~~F~---------idlDs~nI~Fi~L 115 (465)
T KOG1387|consen 82 YSGDFNVTPENILNKVKNKFD---------IDLDSDNIFFIYL 115 (465)
T ss_pred EeCCCCCCHHHHHHHHHHhcC---------ceecccceEEEEE
Confidence 6676 9999999987764322 3334445566765
No 38
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=22.33 E-value=1.4e+02 Score=22.59 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCCCCCEEEEeccc
Q 022224 80 ICHAYQLLRKGGLKDENIIVFMYDD 104 (300)
Q Consensus 80 v~~~YqiLk~~GipdenIIlmmyDD 104 (300)
+-.+-+.|...||+.++|.+.-+-+
T Consensus 56 A~~V~~~L~~~gi~~~ri~~~~~G~ 80 (97)
T PF00691_consen 56 AEAVKQYLVENGIPPERISVVGYGE 80 (97)
T ss_dssp HHHHHHHHHHTTSSGGGEEEEEETT
T ss_pred HHHHHHHHHHcCCChHhEEEEEEcc
Confidence 4577889999999999999877654
No 39
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=22.28 E-value=83 Score=26.77 Aligned_cols=35 Identities=29% Similarity=0.605 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCC
Q 022224 136 GEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP 181 (300)
Q Consensus 136 g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~ 181 (300)
.+++|+..|..+++ |.|+-.|++-+|++..+|--+
T Consensus 52 P~dltvgqfi~iIR-----------kRiqL~~~kA~flfVn~~~p~ 86 (116)
T KOG1654|consen 52 PDDLTVGQFIKIIR-----------KRIQLSPEKAFFLFVNNTSPP 86 (116)
T ss_pred cccccHHHHHHHHH-----------HHhccChhHeEEEEEcCcCCc
Confidence 46899999999999 336778899999999998643
No 40
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=22.01 E-value=1.1e+02 Score=27.39 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.8
Q ss_pred CcCHHHHHHHHHHHHHcCCCceEEEEeccccc
Q 022224 191 YIYADELIDVLKKKHASGNYKSLVFYLEACES 222 (300)
Q Consensus 191 ~L~a~dL~~~L~~M~~~~~YkklVf~vEAC~S 222 (300)
.++|.-|.++|++.+++. -+..++-+|||-+
T Consensus 67 PVHA~NL~e~l~~I~~~~-~~~~IIAIDAcLG 97 (163)
T PF06866_consen 67 PVHALNLEETLNEIKKKH-PNPFIIAIDACLG 97 (163)
T ss_pred CcchhhHHHHHHHHHHHC-CCCeEEEEECCCC
Confidence 499999999999986532 2567888999954
No 41
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=21.82 E-value=58 Score=28.88 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=25.4
Q ss_pred eEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022224 61 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 61 wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIl 99 (300)
.-|.|+|+.++ +-.+.+.|++.|++.+||..
T Consensus 198 ~~v~~CGp~~~--------~~~v~~~l~~~G~~~~~i~~ 228 (232)
T cd06212 198 CDVYLCGPPPM--------IDAALPVLEMSGVPPDQIFY 228 (232)
T ss_pred CEEEEECCHHH--------HHHHHHHHHHcCCCHHHeee
Confidence 45888998865 45778899999999999975
No 42
>TIGR02841 spore_YyaC putative sporulation protein YyaC. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, also called YyaC, is a member of that panel and is otherwise uncharacterized. The second round of PSI-BLAST shows many similarities to the germination protease GPR, which is found in exactly the same set of organisms and has a known role in the sporulation/germination process.
Probab=21.71 E-value=98 Score=27.19 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=24.7
Q ss_pred CcCHHHHHHHHHHHHHcCCCceEEEEeccccc
Q 022224 191 YIYADELIDVLKKKHASGNYKSLVFYLEACES 222 (300)
Q Consensus 191 ~L~a~dL~~~L~~M~~~~~YkklVf~vEAC~S 222 (300)
.++|.-|.++|++.+++.. +..++-+|||=.
T Consensus 43 PVHA~NL~e~l~~I~~~~~-~~~iIAIDAcLG 73 (140)
T TIGR02841 43 PVHAKNLEEKLKIIKKKHP-NPFIIAIDACLG 73 (140)
T ss_pred CcccccHHHHHHHHHHhCC-CCeEEEEECccC
Confidence 4999999999999965433 567888999954
No 43
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=21.67 E-value=47 Score=34.99 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=13.3
Q ss_pred cCCCCCeEEEEEecCCC
Q 022224 164 DSGPNDHIFIFYSDHGG 180 (300)
Q Consensus 164 ~S~~~D~VFIY~tgHGg 180 (300)
+..+.+..+||+||||-
T Consensus 440 k~~~~~~~liY~SDHGE 456 (555)
T COG2194 440 KDKKDNTSLIYFSDHGE 456 (555)
T ss_pred HhCCCCeEEEEEcCccH
Confidence 33334889999999997
No 44
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=21.52 E-value=1.3e+02 Score=25.19 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=30.5
Q ss_pred CcCHHHHHHHHHHHHHcCCCceEEEEeccccccccccc
Q 022224 191 YIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEG 228 (300)
Q Consensus 191 ~L~a~dL~~~L~~M~~~~~YkklVf~vEAC~SGSmfe~ 228 (300)
.-.+.+|++.|.+...++.|.++|++.+.=.-|-|-+.
T Consensus 72 ~~Fa~~vA~~L~~~~~~~~~~~LvlvA~p~~LG~LR~~ 109 (138)
T PF10116_consen 72 ERFAREVADRLEKARRAGKFDRLVLVAPPRFLGLLREH 109 (138)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 35678999999999999999999999877555555443
No 45
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=21.50 E-value=1.1e+02 Score=28.94 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=27.6
Q ss_pred CCeeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022224 58 GTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 58 ~~~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIl 99 (300)
|+.--+|++|-|+=-+|- ..-.|-+-|++.|+|.++|.+
T Consensus 92 gKV~~LLlSGDN~~~sYn---Ep~tM~kdL~~~GVp~~~i~l 130 (235)
T COG2949 92 GKVNYLLLSGDNATVSYN---EPRTMRKDLIAAGVPAKNIFL 130 (235)
T ss_pred CCeeEEEEecCCCccccc---chHHHHHHHHHcCCCHHHeee
Confidence 455556666665544332 466788899999999999986
No 46
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=21.39 E-value=88 Score=28.92 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=31.4
Q ss_pred eeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEecccccc
Q 022224 60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAF 107 (300)
Q Consensus 60 ~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIlmmyDDiA~ 107 (300)
..-|+++|+.++- -.+-+.|++.|++++||.+..-.-+.|
T Consensus 190 ~~~v~lCGp~~mv--------~~~~~~L~~~Gv~~~~i~~~~~~~m~c 229 (261)
T TIGR02911 190 EVQAIVVGPPIMM--------KFTVQELLKKGIKEENIWVSYERKMCC 229 (261)
T ss_pred ceEEEEECCHHHH--------HHHHHHHHHcCCCHHHEEEEeccceec
Confidence 3468888887653 346778999999999999998776666
No 47
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=21.00 E-value=2.8e+02 Score=27.93 Aligned_cols=59 Identities=24% Similarity=0.474 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHH
Q 022224 136 GEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKK 203 (300)
Q Consensus 136 g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~ 203 (300)
|..+|.+.++++|+|.++..+ .+.....|.|.|=-+--|...+-||. |++=++.-.|.+
T Consensus 312 ~~~IT~~rYL~lLk~~k~~~~------~Dees~EH~f~~k~n~~gkhivfyPT---L~Sl~~Ri~lA~ 370 (392)
T KOG2091|consen 312 GEAITAKRYLQLLKGEKSVFK------FDEESKEHFFEYKRNDDGKHIVFYPT---LTSLELRIELAR 370 (392)
T ss_pred CCceeHHHHHHHHhccCccee------eccccchhheeeeccCCCceEEEecc---hHhHHHHHHHHH
Confidence 567999999999999876542 34444567777775656667777774 777666655554
No 48
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=20.68 E-value=2.4e+02 Score=27.61 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=43.1
Q ss_pred CCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecc
Q 022224 165 SGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEA 219 (300)
Q Consensus 165 S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~YkklVf~vEA 219 (300)
..-+++|..|+++-...+++++|-..++.-+|....++..+....-+.+.++++|
T Consensus 45 ~kr~srvI~~Ihrqe~~~~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~T 99 (285)
T PF01972_consen 45 EKRGSRVITLIHRQERVSFLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHT 99 (285)
T ss_pred HHhCCEEEEEEEeccccceeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEEC
Confidence 3446889999998777889999987788877777777777766677778787775
Done!