Query 022224
Match_columns 300
No_of_seqs 202 out of 407
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:58:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bij_A Uncharacterized protein 99.5 9.4E-14 3.2E-18 128.6 10.8 158 58-281 2-232 (285)
2 4af8_A Metacaspase MCA2; hydro 99.4 4.8E-12 1.6E-16 122.3 14.0 193 54-289 87-322 (367)
3 4f6o_A Metacaspase-1; rossmann 99.3 1.5E-11 5E-16 118.3 13.8 133 54-227 48-201 (350)
4 3uoa_B Mucosa-associated lymph 98.7 1.9E-07 6.6E-12 90.9 14.5 167 58-289 4-190 (390)
5 4ehd_A Caspase-3; caspase, apo 95.9 0.044 1.5E-06 50.7 10.1 146 56-250 41-207 (277)
6 2j32_A Caspase-3; Pro-caspase3 95.6 0.047 1.6E-06 49.4 9.0 144 58-250 15-179 (250)
7 1m72_A Caspase-1; caspase, cys 95.3 0.091 3.1E-06 48.2 10.0 144 58-250 31-196 (272)
8 2h54_A Caspase-1; allosteric s 95.2 0.17 5.7E-06 43.9 10.8 120 58-224 42-170 (178)
9 3sir_A Caspase; hydrolase; 2.6 95.2 0.12 4.2E-06 47.0 10.3 116 58-225 19-143 (259)
10 3h11_B Caspase-8; cell death, 95.0 0.21 7.3E-06 45.8 11.4 119 58-224 16-148 (271)
11 3od5_A Caspase-6; caspase doma 94.8 0.18 6.2E-06 46.4 10.6 120 57-225 19-145 (278)
12 1f1j_A Caspase-7 protease; cas 94.8 0.14 4.8E-06 47.9 9.8 144 58-250 68-235 (305)
13 3e4c_A Caspase-1; zymogen, inf 94.5 0.4 1.4E-05 44.7 12.2 123 56-225 57-188 (302)
14 2nn3_C Caspase-1; cysteine pro 94.1 0.28 9.4E-06 46.1 10.2 144 58-250 59-224 (310)
15 1nw9_B Caspase 9, apoptosis-re 93.4 0.42 1.5E-05 43.6 9.9 118 58-223 20-151 (277)
16 2fp3_A Caspase NC; apoptosis, 92.8 0.83 2.8E-05 42.8 11.2 119 58-223 60-187 (316)
17 1pyo_A Caspase-2; apoptosis, c 90.5 1.8 6.2E-05 37.0 9.9 122 57-225 31-159 (167)
18 2dko_A Caspase-3; low barrier 85.9 1.9 6.6E-05 36.0 6.9 118 58-224 15-139 (146)
19 1qtn_A Caspase-8; apoptosis, d 83.0 0.78 2.7E-05 39.1 3.3 120 58-225 22-155 (164)
20 3h11_A CAsp8 and FADD-like apo 74.8 3.5 0.00012 37.8 5.1 110 58-222 42-154 (272)
21 2ql9_A Caspase-7; cysteine pro 70.2 2.4 8.4E-05 36.6 2.7 118 58-224 43-167 (173)
22 3p45_A Caspase-6; protease, hu 69.5 3.1 0.00011 36.1 3.3 120 58-226 43-169 (179)
23 1tbf_A CGMP-specific 3',5'-cyc 35.5 18 0.00063 34.1 2.6 25 68-92 97-122 (347)
24 2r8q_A Class I phosphodiestera 34.9 18 0.00061 34.4 2.4 25 68-92 96-121 (359)
25 3ca8_A Protein YDCF; two domai 34.5 33 0.0011 31.1 4.0 35 63-99 65-119 (266)
26 1taz_A Calcium/calmodulin-depe 33.2 16 0.00056 34.7 1.8 24 69-92 79-103 (365)
27 1y2k_A DPDE3, PDE43, CAMP-spec 28.1 21 0.00071 33.7 1.5 25 68-92 92-117 (349)
28 3itu_A CGMP-dependent 3',5'-cy 26.5 26 0.00088 33.2 1.9 25 68-92 78-103 (345)
29 1cvr_A Gingipain R, RGPB; casp 23.9 34 0.0012 33.2 2.3 63 137-226 188-250 (435)
30 3m7v_A Phosphopentomutase; str 23.4 26 0.0009 31.1 1.2 22 160-181 324-345 (413)
31 4gdk_A Ubiquitin-like protein 23.3 54 0.0019 25.2 2.9 34 137-181 28-61 (91)
32 3bjc_A CGMP-specific 3',5'-cyc 23.1 43 0.0015 34.8 2.9 26 68-93 612-638 (878)
33 3v93_A Cyclic nucleotide speci 21.6 39 0.0013 31.9 2.1 24 68-91 95-119 (345)
34 1f0j_A PDE4B, phosphodiesteras 20.3 49 0.0017 31.6 2.5 25 68-92 79-104 (377)
35 3dyn_A High affinity CGMP-spec 20.1 45 0.0016 31.2 2.2 25 68-92 71-96 (329)
No 1
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=99.49 E-value=9.4e-14 Score=128.55 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=114.4
Q ss_pred CCeeEEEEeccCC----CCC----ch-hhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccC
Q 022224 58 GTRWAVLLAGSNG----FWN----YR-HQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYK 128 (300)
Q Consensus 58 ~~~wAVLVagS~g----w~N----YR-HqADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~ 128 (300)
+++||+||+-+++ |.+ -+ =..|+..+.++|++.|++ |++++-+
T Consensus 2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~~~Gf~---v~~l~~~------------------------- 53 (285)
T 3bij_A 2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAAERGFA---VTTLMTK------------------------- 53 (285)
T ss_dssp CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHHHTTCE---EEEEEGG-------------------------
T ss_pred CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHHHcCCc---eEEecCC-------------------------
Confidence 4789999998874 311 11 248999999999999997 6666522
Q ss_pred CcCccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCC-------------CcccCCCCCCcCHH
Q 022224 129 GVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP-------------GVLGMPTSRYIYAD 195 (300)
Q Consensus 129 gv~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~-------------g~l~fpd~~~L~a~ 195 (300)
+.|.+|+++.|..- +-+..++|.+||||+|||.. ++|...|.. |..+
T Consensus 54 ---------~~t~~~i~~al~~l----------~~~~~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~~-i~~~ 113 (285)
T 3bij_A 54 ---------AATRAKVIDAIGKA----------AKALGKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDGE-LIDD 113 (285)
T ss_dssp ---------GCCHHHHHHHHHHH----------HHHCCTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSSE-EEHH
T ss_pred ---------ccCHHHHHHHHHHH----------HHhCCCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCCC-ccHH
Confidence 15888998888621 11346789999999999962 355555554 7788
Q ss_pred HHHHHHHHHHHcCCCceEEEEeccccccccccc----------------------cCC----------------------
Q 022224 196 ELIDVLKKKHASGNYKSLVFYLEACESGSIFEG----------------------LLP---------------------- 231 (300)
Q Consensus 196 dL~~~L~~M~~~~~YkklVf~vEAC~SGSmfe~----------------------llp---------------------- 231 (300)
+|.+.|+.+. +-+++++++|||+||++.+. .+|
T Consensus 114 ~l~~~l~~l~---~~~~~~vilD~C~SG~~~~~~p~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (285)
T 3bij_A 114 ELYALLGKFA---AGVRVLVFSDSCHSGTVVKMAYYNGTTAARSAGPDEGEIRYRAMPQSVAMRTYRANREFYDTIQQKT 190 (285)
T ss_dssp HHHHHHTTSC---SSCEEEEEEECCCCCCHHHHHHTTC-------------CEESBCCHHHHHHHHHHTHHHHHHHHHHC
T ss_pred HHHHHHHhcc---CCCeEEEEEecCCCCccccccccccccccccccccccccceeecCchhhhhhhhcchhHHHHHhhhc
Confidence 9999987762 35789999999999998762 011
Q ss_pred -------CCCcEEEEeecCCCCccccccCCCCCCCCCCCcccchhhHHHHHHHHhhh
Q 022224 232 -------EGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRY 281 (300)
Q Consensus 232 -------~~~NV~~iTASn~~ESSys~yc~~~~~~~~~~~~tcLgD~fSv~wme~~~ 281 (300)
...++++++|+.++|.|+-.- . ..+|+.+.++-..
T Consensus 191 ~~~~~~~~~~~~i~lsa~~~~q~A~e~~----------~-----~G~FT~aLl~~L~ 232 (285)
T 3bij_A 191 KKVDLADVKASILLISGCQDNQLSQDGA----------F-----NGAFTGQLLRVWK 232 (285)
T ss_dssp CCCCTTTCSSEEEEEESSCTTSCCEECS----------S-----SCHHHHHHHHHHG
T ss_pred ccccccCCCCCEEEEEeCCCCccccccc----------c-----CCHHHHHHHHHHh
Confidence 123689999999999998531 1 2689999987544
No 2
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=99.37 E-value=4.8e-12 Score=122.32 Aligned_cols=193 Identities=18% Similarity=0.164 Sum_probs=125.1
Q ss_pred CCCCCCeeEEEEeccCCC--CCch-hhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCc
Q 022224 54 DDSVGTRWAVLLAGSNGF--WNYR-HQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGV 130 (300)
Q Consensus 54 ~~~~~~~wAVLVagS~gw--~NYR-HqADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv 130 (300)
....+++||+||+-+.+= .+-+ =..|+-.+.+.|++.|++.++|+++.-++ ..| +
T Consensus 87 ~~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~GF~~~~i~~L~D~~-----~~p--~--------------- 144 (367)
T 4af8_A 87 PLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKRGLPINEAVILVDED-----NFP--G--------------- 144 (367)
T ss_dssp CCTTCCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHTTCCCSEEEEEECCT-----TCT--T---------------
T ss_pred CCCCCCeEEEEEEeCCCCCccCCCCHHHHHHHHHHHHHHcCCCchheEEecccc-----ccc--c---------------
Confidence 445689999999988421 1122 14789999999999999999999886432 111 1
Q ss_pred CccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCC---------Cc---ccCCCC---CCcCHH
Q 022224 131 PKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP---------GV---LGMPTS---RYIYAD 195 (300)
Q Consensus 131 ~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~---------g~---l~fpd~---~~L~a~ 195 (300)
.....|.+|+++.|.-- +-+..++|.+||||+|||.. |+ |.-.|. ..|..+
T Consensus 145 ----~~~~pTr~nI~~aL~~L----------~~~a~pgD~l~fyFSGHG~q~~d~~de~dg~De~LvP~D~~~~g~I~dd 210 (367)
T 4af8_A 145 ----RTDQPTRDNIVRYMAWL----------VKDAKPGDVLFFHYSGHGTQCKSRGDSDEKYDQCIAPVDFQKSGCIVDD 210 (367)
T ss_dssp ----CCBCCCHHHHHHHHHHH----------HHTCCTTCEEEEEEESCEEEECCC-----CCEEEECCTTHHHHCCEEHH
T ss_pred ----cccCCCHHHHHHHHHHH----------HHhCCCCCEEEEEEcCCcCccCCCCCCCCCcceEEEeecCCcCCCccHH
Confidence 12467999999988721 11346789999999999982 11 333331 247788
Q ss_pred HHHHHH-HHHHHcCCCceEEEEeccccccccccccC-----------------------CCCCcEEEEeecCCCCccccc
Q 022224 196 ELIDVL-KKKHASGNYKSLVFYLEACESGSIFEGLL-----------------------PEGLNIYATTASNAEESSWGT 251 (300)
Q Consensus 196 dL~~~L-~~M~~~~~YkklVf~vEAC~SGSmfe~ll-----------------------p~~~NV~~iTASn~~ESSys~ 251 (300)
||.+.| +.+ ..=+++++++|+||||++.+--. +..-+++.++|+..+|.|.-.
T Consensus 211 eL~~lLv~~l---~~g~~v~vIlD~ChSGt~~dlp~~~~~r~~~~~~~~~~~~~~~~~~~~~~~vi~~Sac~d~QtSad~ 287 (367)
T 4af8_A 211 DIHKLLFSRL---PEKVRLTAVFDCGHSGSIMDLPFTYVCSGGEQASGTPHMKRIREGNDVLGDVMMISGCADEQTSADV 287 (367)
T ss_dssp HHHHHHTTTC---CTTCEEEEEEECTTCCCCTTCSEEEECCTTCCTTSCCCCEECSSCCCCCSEEEEEEEECCCSCCCCC
T ss_pred HHHHHHHHhc---cCCCEEEEEEeCCCCCcccccccccccccccccccchhhhhhccCCCCCCCEEEEEecCCCCchhhh
Confidence 888874 444 23479999999999999977110 012268999999999999876
Q ss_pred cCCCCCCCCCCCcccchhhHHHHHHHHhhh-hccchhhH
Q 022224 252 YCPGEIPGPPPEYSTCLGDLYSIAWMEDRY-DNIYDFIY 289 (300)
Q Consensus 252 yc~~~~~~~~~~~~tcLgD~fSv~wme~~~-~~~~~~~~ 289 (300)
.-.... ..+ +.-=..+||++.++--. .....+.+
T Consensus 288 ~~~~~f-~~g---~~~~~GafTyali~~L~~~~~~Ty~~ 322 (367)
T 4af8_A 288 KNTATF-GTG---STGAGGAATQCITCMLMNNQSLSYGK 322 (367)
T ss_dssp C--------C---CCBCBSHHHHHHHHHHHCCSCCBHHH
T ss_pred hccccc-ccc---ccCcccHHHHHHHHHHHhCCCCCHHH
Confidence 421000 000 00114799999987554 23344444
No 3
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.5e-11 Score=118.28 Aligned_cols=133 Identities=25% Similarity=0.400 Sum_probs=93.6
Q ss_pred CCCCCCeeEEEEeccCCCC---Cch-hhhHHHHHHHHHHh-CCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccC
Q 022224 54 DDSVGTRWAVLLAGSNGFW---NYR-HQADICHAYQLLRK-GGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYK 128 (300)
Q Consensus 54 ~~~~~~~wAVLVagS~gw~---NYR-HqADv~~~YqiLk~-~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~ 128 (300)
....+++|||||+-+. |. +-+ =..|+-.+.+.|++ .|+++++|+++.-++ .+|
T Consensus 48 s~~~grr~ALlIGIn~-Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~-----~~~---------------- 105 (350)
T 4f6o_A 48 SQCTGRRKALIIGINY-IGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQ-----NDL---------------- 105 (350)
T ss_dssp CCCCSCEEEEEEECCC-TTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTS-----SCG----------------
T ss_pred CCCCCCEEEEEEEeCC-CCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccc-----ccc----------------
Confidence 4455899999999863 22 122 24789999999987 599999998876432 111
Q ss_pred CcCccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCC----------C---cccCCCC---CCc
Q 022224 129 GVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP----------G---VLGMPTS---RYI 192 (300)
Q Consensus 129 gv~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~----------g---~l~fpd~---~~L 192 (300)
....|.+|+++.|.-- +-+..++|.+||||+|||.. | .|.-.|. ..|
T Consensus 106 -------~~~pTr~nI~~aL~~L----------~~~a~pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I 168 (350)
T 4f6o_A 106 -------VRVPTRANMIRAMQWL----------VKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPI 168 (350)
T ss_dssp -------GGSCCHHHHHHHHHHH----------HTTCCTTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCE
T ss_pred -------ccCCCHHHHHHHHHHH----------HHhCCCCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcc
Confidence 1247999999998721 11346789999999999972 1 2333331 258
Q ss_pred CHHHHHHHHHHHHHcCCCceEEEEecccccccccc
Q 022224 193 YADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (300)
Q Consensus 193 ~a~dL~~~L~~M~~~~~YkklVf~vEAC~SGSmfe 227 (300)
..+||.+.|.+. ..+=.++++|+|+||||++.+
T Consensus 169 ~ddeL~~~L~~~--l~~g~~vt~IlD~ChSGt~ld 201 (350)
T 4f6o_A 169 IDDEMHDIMVKP--LQQGVRLTALFDSCHSGTVLD 201 (350)
T ss_dssp EHHHHHHHHTTT--CCTTCEEEEEECSSSCTTTTC
T ss_pred cHHHHHHHHHhh--cCCCCeEEEEEccCCCCcccc
Confidence 889999887643 133468999999999999975
No 4
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=98.70 E-value=1.9e-07 Score=90.90 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=110.0
Q ss_pred CCeeEEEEeccCCCC--Cch-hhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCccC
Q 022224 58 GTRWAVLLAGSNGFW--NYR-HQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDY 134 (300)
Q Consensus 58 ~~~wAVLVagS~gw~--NYR-HqADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~iDY 134 (300)
++++|+||+-+++-. +-+ =..|+-.+.+.|++.|++ +.++ .
T Consensus 4 ~~r~ALIIGn~~Y~~~~~L~ga~~DA~~L~~~L~~lGF~---V~~l--~------------------------------- 47 (390)
T 3uoa_B 4 KDKVALLIGNMNYREHPKLKAPLVDVYELTNLLRQLDFK---VVSL--L------------------------------- 47 (390)
T ss_dssp SCEEEEEEECCCCSSSCCCSTHHHHHHHHHHHHHHTTCE---EEEE--E-------------------------------
T ss_pred CCCEEEEEEecCCCCcccCCChHHHHHHHHHHHHHcCCe---EEEe--e-------------------------------
Confidence 689999999877532 212 137999999999999996 2221 1
Q ss_pred CCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCC----CcccCCCCC-------CcCHHHHHHHHHH
Q 022224 135 TGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP----GVLGMPTSR-------YIYADELIDVLKK 203 (300)
Q Consensus 135 ~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~----g~l~fpd~~-------~L~a~dL~~~L~~ 203 (300)
++|.+++.+.|.--. + ...+.|.+++||+|||.. ++|.-.|.. .+.-++|.+.|+.
T Consensus 48 ---DlT~~eI~~aL~~f~--------~--~~~~~D~~l~yfsGHG~~~~g~~yL~p~Da~~~~~~~~~isl~~Ll~~l~~ 114 (390)
T 3uoa_B 48 ---DLTEYEMRNAVDEFL--------L--LLDKGVYGLLYYAGHGYENFGNSFMVPVDAPNPYRSENCLCVQNILKLMQE 114 (390)
T ss_dssp ---SCCHHHHHHHHHHHH--------H--TCCTTCEEEEEEESCEEEETTEEEECCTTCCSSCCGGGSEEHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHH--------h--hCCCCCEEEEEEecCccccCCcceEEecCCCccccccceeeHHHHHHHHHh
Confidence 257888888887211 1 124679999999999954 454333332 3566666666554
Q ss_pred HHHcCCCceEEEEeccccccccccc------cCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCcccchhhHHHHHHH
Q 022224 204 KHASGNYKSLVFYLEACESGSIFEG------LLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWM 277 (300)
Q Consensus 204 M~~~~~YkklVf~vEAC~SGSmfe~------llp~~~NV~~iTASn~~ESSys~yc~~~~~~~~~~~~tcLgD~fSv~wm 277 (300)
. .=|..+|++|||+++..+++ .+|...++++..|+.+++.||-..-++ .. |.+|..+..
T Consensus 115 ~----~~K~kL~ILDACrg~~~~~~~~~~~~~ip~~ad~Li~yAT~pG~~A~r~~~d~-------~~----gS~FtqaL~ 179 (390)
T 3uoa_B 115 K----ETGLNVFLLDMCRKRNDYDDTIPILDALKVTANIVFGYATCQGAEAFEIQHSG-------LA----NGIFMKFLK 179 (390)
T ss_dssp T----TCSEEEEEEESCCCCCTTCCCCCCCCCCCCCSCEEEEESSCTTCCCEECSSCT-------TC----CCHHHHHHT
T ss_pred c----CCCceEEEEECCCCCCcccccccccccCcccCCcEEEEEcCCCcEeeecCCCC-------CC----CCHHHHHHH
Confidence 3 55678999999999755542 234455899999999999999754211 11 468888776
Q ss_pred HhhhhccchhhH
Q 022224 278 EDRYDNIYDFIY 289 (300)
Q Consensus 278 e~~~~~~~~~~~ 289 (300)
+--.. ..++..
T Consensus 180 e~L~~-~~dl~~ 190 (390)
T 3uoa_B 180 DRLLE-DKKITV 190 (390)
T ss_dssp TTTTC-SSCHHH
T ss_pred HHHcc-CCCHHH
Confidence 65443 344443
No 5
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=95.88 E-value=0.044 Score=50.67 Aligned_cols=146 Identities=14% Similarity=0.202 Sum_probs=92.8
Q ss_pred CCCCeeEEEEeccCCCC----Cchhhh--HHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCC
Q 022224 56 SVGTRWAVLLAGSNGFW----NYRHQA--DICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKG 129 (300)
Q Consensus 56 ~~~~~wAVLVagS~gw~----NYRHqA--Dv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~g 129 (300)
......|+||+=+++-. .-|..+ |+-.+-++|++.|+. |..+.
T Consensus 41 ~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~-----V~~~~-------------------------- 89 (277)
T 4ehd_A 41 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYE-----VRNKN-------------------------- 89 (277)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCE-----EEEEE--------------------------
T ss_pred CCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCE-----EEEec--------------------------
Confidence 33578999999887753 356665 899999999999995 22222
Q ss_pred cCccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcC
Q 022224 130 VPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASG 208 (300)
Q Consensus 130 v~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~ 208 (300)
++|.+.+.+.|+--. .+ +-...|-+++++.+||..|.|.--|+. +.-++|.+.+..-+ ..-
T Consensus 90 --------dlt~~em~~~l~~f~-------~~--dh~~~d~~vv~ilSHG~~g~i~g~D~~-v~l~~I~~~f~~~~CpsL 151 (277)
T 4ehd_A 90 --------DLTREEIVELMRDVS-------KE--DHSKRSSFVCVLLSHGEEGIIFGTNGP-VDLKKITNFFRGDRCRSL 151 (277)
T ss_dssp --------SCCHHHHHHHHHHHH-------TS--CCTTEEEEEEEEESCEETTEEEETTEE-EEHHHHHHTTSTTTCGGG
T ss_pred --------CCCHHHHHHHHHHHH-------hh--cccCCCEEEEEEEcCCCCCEEEEeCCc-EeHHHHHHHhhhccCchh
Confidence 368888888887311 01 123468889999999999987766663 55555544443210 001
Q ss_pred CCceEEEEeccccccccccc--------------cCCCCCcEEEEeecCCCCcccc
Q 022224 209 NYKSLVFYLEACESGSIFEG--------------LLPEGLNIYATTASNAEESSWG 250 (300)
Q Consensus 209 ~YkklVf~vEAC~SGSmfe~--------------llp~~~NV~~iTASn~~ESSys 250 (300)
.-|=.+|+++||...-+-.+ .+|...++++.=|+-++.-||-
T Consensus 152 ~gKPKlffiQACRG~~~~~g~~~~~~~~~~~~~~~ip~~aD~Li~yST~pG~vs~r 207 (277)
T 4ehd_A 152 TGKPKLFIIQACRGTELDCGIETDSGVDDDMACHKIPVEADFLYACSTAPGYYSWR 207 (277)
T ss_dssp TTSCEEEEEESCCSSBCBCCCCC----------CCCCTTTTEEEEESSCTTBCCEE
T ss_pred cCCccEEEEecCCCCcccCCccccCCccccccccccCCCCCEEEEEECCCCeEeec
Confidence 23456899999986533222 1343345666666666666654
No 6
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=95.59 E-value=0.047 Score=49.40 Aligned_cols=144 Identities=15% Similarity=0.204 Sum_probs=89.2
Q ss_pred CCeeEEEEeccCCCC----Cchhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcC
Q 022224 58 GTRWAVLLAGSNGFW----NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVP 131 (300)
Q Consensus 58 ~~~wAVLVagS~gw~----NYRHq--ADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~ 131 (300)
....|+||+=+++.. .-|.. .|+-.+-++|++.|+. |..+.
T Consensus 15 ~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~-----V~~~~---------------------------- 61 (250)
T 2j32_A 15 EMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYE-----VRNKN---------------------------- 61 (250)
T ss_dssp EEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCE-----EEEEE----------------------------
T ss_pred CccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCE-----EEEEe----------------------------
Confidence 577999998877653 24555 4889999999999995 22222
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCC
Q 022224 132 KDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNY 210 (300)
Q Consensus 132 iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~Y 210 (300)
++|.+.+.+.|+--. .+ +-...|-+++||.+||..|.+.-.|+ .+.-++|.+.++.-+ ..-.=
T Consensus 62 ------dlt~~em~~~l~~~~-------~~--~~~~~d~~v~~~lsHG~~g~i~~~D~-~v~l~~i~~~f~~~~cp~L~g 125 (250)
T 2j32_A 62 ------DLTREEIVELMRDVS-------KE--DHSKRSSFVCVLLSHGEEGIIFGTNG-PVDLKKITNFFRGDRCRSLTG 125 (250)
T ss_dssp ------SCCHHHHHHHHHHHH-------TS--CCTTEEEEEEEEESCEETTEEEETTE-EEEHHHHHHTTSTTTCGGGTT
T ss_pred ------CCCHHHHHHHHHHHH-------Hh--hccCCCEEEEEECCCCCCCeEEecCC-cEEHHHHHHHhccccChhHcC
Confidence 367788888887211 11 11345789999999999987765565 355555544443200 00122
Q ss_pred ceEEEEeccccccccccc--------------cCCCCCcEEEEeecCCCCcccc
Q 022224 211 KSLVFYLEACESGSIFEG--------------LLPEGLNIYATTASNAEESSWG 250 (300)
Q Consensus 211 kklVf~vEAC~SGSmfe~--------------llp~~~NV~~iTASn~~ESSys 250 (300)
|=.+|+++||...-+-.+ .+|...++++.=|+.++.-||-
T Consensus 126 KPKlf~iqACRg~~~~~g~~~~~~~~~~~~~~~ip~~aD~Li~ysT~pG~vs~r 179 (250)
T 2j32_A 126 KPKLFIIQACRGTELDCGIATDSGVDDDMACHKIPVEADFLYAYSTAPGYYSWR 179 (250)
T ss_dssp SCEEEEEESCSEEECBCCCCC----------CCCCTTTTEEEEESSCTEECCEE
T ss_pred CCeEEEEecccCCcccCCccccCCccccccccccCCCCCEEEEEeCCCccEEec
Confidence 345889999975332111 1344446777766666666654
No 7
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=95.32 E-value=0.091 Score=48.25 Aligned_cols=144 Identities=17% Similarity=0.246 Sum_probs=90.7
Q ss_pred CCeeEEEEeccCCCC---Cchh--hhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCc
Q 022224 58 GTRWAVLLAGSNGFW---NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPK 132 (300)
Q Consensus 58 ~~~wAVLVagS~gw~---NYRH--qADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~i 132 (300)
....|+||+=+++-. .-|. ..|+-.+-++|++.|+. |..+.
T Consensus 31 ~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~-----V~~~~----------------------------- 76 (272)
T 1m72_A 31 HRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFK-----VTVFP----------------------------- 76 (272)
T ss_dssp EEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCE-----EEEEE-----------------------------
T ss_pred CCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCE-----EEEec-----------------------------
Confidence 478999998776542 2344 36888999999999994 22222
Q ss_pred cCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCCc
Q 022224 133 DYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNYK 211 (300)
Q Consensus 133 DY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~Yk 211 (300)
++|.+.+.+.|+--. .+ +-...|-+++||.+||..|+|.-.|+. +.-++|.+.++.-. ..-.=|
T Consensus 77 -----dlt~~em~~~l~~~~-------~~--dh~~~d~~v~~~lsHG~~~~i~~~D~~-v~l~~i~~~f~~~~cpsL~gK 141 (272)
T 1m72_A 77 -----NLKSEEINKFIQQTA-------EM--DHSDADCLLVAVLTHGELGMLYAKDTH-YKPDNLWYYFTADKCPTLAGK 141 (272)
T ss_dssp -----SCCHHHHHHHHHHHH-------TS--CCTTEEEEEEEEESCEETTEEECSSSE-ECTTHHHHTTSTTTCGGGTTS
T ss_pred -----CcCHHHHHHHHHHHH-------Hh--hcCCCCEEEEEEcCCCCCCEEEecCCc-EEHHHHHHHhccccChhhcCC
Confidence 367788888887311 01 113467899999999999988777764 66566655553210 000224
Q ss_pred eEEEEeccccccccccc----------------cCCCCCcEEEEeecCCCCcccc
Q 022224 212 SLVFYLEACESGSIFEG----------------LLPEGLNIYATTASNAEESSWG 250 (300)
Q Consensus 212 klVf~vEAC~SGSmfe~----------------llp~~~NV~~iTASn~~ESSys 250 (300)
=.+|+++||...-+-.+ .+|...++++.=|+.++.-||-
T Consensus 142 PKlffiqACRg~~~~~g~~~~~~~~d~~~~~~~~iP~~aD~Li~ysT~pG~vs~r 196 (272)
T 1m72_A 142 PKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPGYFSWR 196 (272)
T ss_dssp CEEEEEESCSSSBCBCCEEEEC---------CEEECTTCSEEEEESSCTTBCCEE
T ss_pred ceEEEEeCCCCCcccCCccccccccccccccccccCCCCCEEEEEeCCCCcEeec
Confidence 45888999985333111 1344446777777777766664
No 8
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=95.20 E-value=0.17 Score=43.95 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=75.0
Q ss_pred CCeeEEEEeccCCCC-Cchhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCccC
Q 022224 58 GTRWAVLLAGSNGFW-NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDY 134 (300)
Q Consensus 58 ~~~wAVLVagS~gw~-NYRHq--ADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~iDY 134 (300)
+...|+||+=+++-. .-|.- .|+-.+-++|++.|+. +.+ +.
T Consensus 42 ~~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~---V~~--~~------------------------------- 85 (178)
T 2h54_A 42 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYS---VDV--KK------------------------------- 85 (178)
T ss_dssp CCCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCE---EEE--EE-------------------------------
T ss_pred cCCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCE---EEE--ec-------------------------------
Confidence 468999998887421 12433 7888999999999995 222 22
Q ss_pred CCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCC-----CcCHHHHHHHHHHHH-HcC
Q 022224 135 TGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSR-----YIYADELIDVLKKKH-ASG 208 (300)
Q Consensus 135 ~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~-----~L~a~dL~~~L~~M~-~~~ 208 (300)
++|.+.+.+.|+--. .+ .+-...|-+++||.+||..|.|.-.|.. .+.-++|.+.+..-+ ..-
T Consensus 86 ---dlt~~em~~~l~~f~-------~~-~d~~~~d~~v~~~lsHG~~g~i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL 154 (178)
T 2h54_A 86 ---NLTASDMTTELEAFA-------HR-PEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 154 (178)
T ss_dssp ---SCCHHHHHHHHHHHH-------TC-GGGGGCSCEEEEEESCBCSSCEECTTCCSSSCCEECHHHHHHHHSTTTCGGG
T ss_pred ---CCCHHHHHHHHHHHH-------hh-hhcCCCCEEEEEEecCCCCCeEEeecCCcccCcEEEHHHHHHHHhhcCChhh
Confidence 367888888887210 01 1112357788899999999876655551 355555555443210 000
Q ss_pred CCceEEEEeccccccc
Q 022224 209 NYKSLVFYLEACESGS 224 (300)
Q Consensus 209 ~YkklVf~vEAC~SGS 224 (300)
.=|-.+|+++||..+-
T Consensus 155 ~gKPKlffiqACRg~~ 170 (178)
T 2h54_A 155 KDKPKVIIIQACRGDS 170 (178)
T ss_dssp TTSCEEEEEESCSSSB
T ss_pred cCCceEEEEECCCCCC
Confidence 1345688999998854
No 9
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=95.16 E-value=0.12 Score=47.01 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=73.3
Q ss_pred CCeeEEEEeccCCCC---Cchhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCc
Q 022224 58 GTRWAVLLAGSNGFW---NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPK 132 (300)
Q Consensus 58 ~~~wAVLVagS~gw~---NYRHq--ADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~i 132 (300)
....|+||+=+++-. .-|.. .|+-.+-++|++.|+. |..+.
T Consensus 19 ~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~-----V~~~~----------------------------- 64 (259)
T 3sir_A 19 NRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFE-----VTVYK----------------------------- 64 (259)
T ss_dssp EEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCE-----EEEEE-----------------------------
T ss_pred CccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCE-----EEEEe-----------------------------
Confidence 468999999887653 33444 6899999999999996 22222
Q ss_pred cCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcC----
Q 022224 133 DYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASG---- 208 (300)
Q Consensus 133 DY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~---- 208 (300)
++|.+.+.+.|+--. .+ +-...|-+++++.+||..|.|.=-|+. + .|.+.++.+...+
T Consensus 65 -----dlt~~em~~~l~~~~-------~~--~h~~~d~~v~~~lsHG~~g~i~~~D~~-v---~l~~i~~~f~~~~cpsL 126 (259)
T 3sir_A 65 -----DCRYKDILRTIEYSA-------SQ--NHSDSDCILVAILSHGEMGYIYAKDTQ-Y---KLDNIWSFFTANHCPSL 126 (259)
T ss_dssp -----ECSHHHHHHHHHHHH-------TS--CCTTEEEEEEEEEECTTCCCCCCTTHH-H---HHHHTTGGGSTTTCGGG
T ss_pred -----CCCHHHHHHHHHHHH-------Hh--hccCCCEEEEEEecCCCCCeEEeCCCc-E---EHHHHHHHhhhccCccc
Confidence 367888888887311 01 224468899999999999877544432 3 4444444443211
Q ss_pred CCceEEEEecccccccc
Q 022224 209 NYKSLVFYLEACESGSI 225 (300)
Q Consensus 209 ~YkklVf~vEAC~SGSm 225 (300)
.=|=.+|+++||...-+
T Consensus 127 ~gKPKlf~iQACRG~~~ 143 (259)
T 3sir_A 127 AGKPKLFFIQACQGDRL 143 (259)
T ss_dssp SSSCEEEEEEEETTSCE
T ss_pred cCCCCEEEEecCCCCcc
Confidence 22456899999986543
No 10
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=94.97 E-value=0.21 Score=45.75 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=77.9
Q ss_pred CCeeEEEEeccCCCC-----------Cchhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCC
Q 022224 58 GTRWAVLLAGSNGFW-----------NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGD 124 (300)
Q Consensus 58 ~~~wAVLVagS~gw~-----------NYRHq--ADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~ 124 (300)
....|+||+=.++-. .-|.. .|+-.+-++|++.|+. |..+.
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~-----V~~~~--------------------- 69 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFE-----IKPHD--------------------- 69 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCE-----EEEEE---------------------
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCE-----EEEEe---------------------
Confidence 468999999877653 34544 5888999999999995 22222
Q ss_pred cccCCcCccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHH
Q 022224 125 DVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKK 204 (300)
Q Consensus 125 dvY~gv~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M 204 (300)
++|.+.+.++|+--.. + +-...|-+++++.+||..|.|.--|+..+.-++|.+.+..-
T Consensus 70 -------------dlt~~em~~~l~~~~~-------~--~h~~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f~~~ 127 (271)
T 3h11_B 70 -------------DCTVEQIYEILKIYQL-------M--DHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGL 127 (271)
T ss_dssp -------------SCCHHHHHHHHHHHHH-------S--CCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTT
T ss_pred -------------CCCHHHHHHHHHHHHH-------h--cCCCCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHhhhc
Confidence 3688888888873110 1 11346788889999999998877676546555555544321
Q ss_pred H-HcCCCceEEEEeccccccc
Q 022224 205 H-ASGNYKSLVFYLEACESGS 224 (300)
Q Consensus 205 ~-~~~~YkklVf~vEAC~SGS 224 (300)
+ ..-.=|=.+|+++||...-
T Consensus 128 ~CpsL~gKPKlffiQACRG~~ 148 (271)
T 3h11_B 128 KCPSLAGKPKVFFIQACQGDN 148 (271)
T ss_dssp TCGGGTTSCEEEEEESCCSSB
T ss_pred cChhhcCCccEEEEeccCCCc
Confidence 0 0002344589999997543
No 11
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=94.83 E-value=0.18 Score=46.39 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=79.4
Q ss_pred CCCeeEEEEeccCCCC----Cchhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCc
Q 022224 57 VGTRWAVLLAGSNGFW----NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGV 130 (300)
Q Consensus 57 ~~~~wAVLVagS~gw~----NYRHq--ADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv 130 (300)
.....|+||+=.++-. .-|.. .|+-.+-++|++.|+. |..+.
T Consensus 19 ~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~-----V~~~~--------------------------- 66 (278)
T 3od5_A 19 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFE-----VKCFN--------------------------- 66 (278)
T ss_dssp SBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCE-----EEEEE---------------------------
T ss_pred CCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-----EEEec---------------------------
Confidence 3578999999887653 34544 5788999999999994 22222
Q ss_pred CccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCC
Q 022224 131 PKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGN 209 (300)
Q Consensus 131 ~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~ 209 (300)
++|.+.+.+.|+-- . .+ +-...|-+++++.+||..|.|.--|+. +.-++|.+.++.-+ ..-.
T Consensus 67 -------dlt~~em~~~l~~~-~------~~--~h~~~d~~vv~ilSHG~~g~i~g~D~~-v~l~~I~~~f~~~~CpsL~ 129 (278)
T 3od5_A 67 -------DLKAEELLLKIHEV-S------TV--SHADADCFVCVFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDKCHSLV 129 (278)
T ss_dssp -------SCCHHHHHHHHHHH-H------HS--CCTTBSCEEEEEESCEETTEEECSSSE-EEHHHHHHTTSTTTCGGGT
T ss_pred -------CCCHHHHHHHHHHH-H------hh--cccCCCEEEEEEECCCCCCEEEEeCCe-EEHHHHHHHhccccChhhc
Confidence 46888888888731 1 01 113468889999999999987776765 66666555553210 0002
Q ss_pred CceEEEEecccccccc
Q 022224 210 YKSLVFYLEACESGSI 225 (300)
Q Consensus 210 YkklVf~vEAC~SGSm 225 (300)
=|=.+|+++||...-+
T Consensus 130 gKPKlffiQACRG~~~ 145 (278)
T 3od5_A 130 GKPKIFIIQACRGNQH 145 (278)
T ss_dssp TSCEEEEEESCCSSBC
T ss_pred CCCcEEEEecCCCCcc
Confidence 2445899999985543
No 12
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=94.78 E-value=0.14 Score=47.92 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=89.7
Q ss_pred CCeeEEEEeccCCCCC----chhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcC
Q 022224 58 GTRWAVLLAGSNGFWN----YRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVP 131 (300)
Q Consensus 58 ~~~wAVLVagS~gw~N----YRHq--ADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~ 131 (300)
....|+||+=+++..+ -|.. .|+-.+-++|++.||. +.+ +.
T Consensus 68 ~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~---V~~--~~---------------------------- 114 (305)
T 1f1j_A 68 KLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFD---VIV--YN---------------------------- 114 (305)
T ss_dssp EEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEE---EEE--EE----------------------------
T ss_pred CCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCE---EEE--ec----------------------------
Confidence 5789999988876532 3444 6889999999999994 222 22
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCC
Q 022224 132 KDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNY 210 (300)
Q Consensus 132 iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~Y 210 (300)
++|.+.+.+.|+-- . .+ .. ...|-+++||.+||..|+|.-.|+. +.-++|.+.+..-. ..=.=
T Consensus 115 ------dlt~~em~~~l~~~-~------~~-~h-~~~d~~vv~ilsHG~~~~i~g~D~~-v~l~~I~~~f~~~~CpsL~g 178 (305)
T 1f1j_A 115 ------DCSCAKMQDLLKKA-S------EE-DH-TNAACFACILLSHGEENVIYGKDGV-TPIKDLTAHFRGDRSKTLLE 178 (305)
T ss_dssp ------SCCHHHHHHHHHHH-H------HS-CG-GGEEEEEEEEESCEETTEEECSSSE-EEHHHHHHTTSTTTCGGGTT
T ss_pred ------CcCHHHHHHHHHHH-H------Hh-hc-CCCCEEEEEEecCCCCCeEEecCCe-EEHHHHHHHhhhccChhhcC
Confidence 36778888888731 0 01 11 2357788999999999987666653 65555554443100 00012
Q ss_pred ceEEEEeccccccccccc-----------------cCCCCCcEEEEeecCCCCcccc
Q 022224 211 KSLVFYLEACESGSIFEG-----------------LLPEGLNIYATTASNAEESSWG 250 (300)
Q Consensus 211 kklVf~vEAC~SGSmfe~-----------------llp~~~NV~~iTASn~~ESSys 250 (300)
|=.+|+++||...-+-.+ .+|...++++.=|+.++.-||-
T Consensus 179 KPKlffiQACRG~~~~~g~~~~~~~~~~~~~~~~~~ip~~aD~LiayST~pG~vs~r 235 (305)
T 1f1j_A 179 KPKLFFIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWR 235 (305)
T ss_dssp SCEEEEEESCCSSBCBCCBC---------------CBCTTTTEEEEESSCTTBCCEE
T ss_pred CceEEEeccccCCcccCCccccCCcccccccccccccCCCCCEEEEEECCCCeeccC
Confidence 445889999976543221 1343446777777777666663
No 13
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=94.49 E-value=0.4 Score=44.72 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=75.7
Q ss_pred CCCCeeEEEEeccCCCC-Cchh--hhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCc
Q 022224 56 SVGTRWAVLLAGSNGFW-NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPK 132 (300)
Q Consensus 56 ~~~~~wAVLVagS~gw~-NYRH--qADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~i 132 (300)
..+.+.|+||+=+++-. .-|. ..|+-.+-++|++.|+. |..+.
T Consensus 57 ~~~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~-----V~~~~----------------------------- 102 (302)
T 3e4c_A 57 SSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYS-----VDVKK----------------------------- 102 (302)
T ss_dssp TTCCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCE-----EEEEE-----------------------------
T ss_pred CCCccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCE-----EEEee-----------------------------
Confidence 34578999999987531 1232 46889999999999996 22222
Q ss_pred cCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCC-----CCcCHHHHHHHHHHHH-H
Q 022224 133 DYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTS-----RYIYADELIDVLKKKH-A 206 (300)
Q Consensus 133 DY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~-----~~L~a~dL~~~L~~M~-~ 206 (300)
++|.+.+.+.|+--.. + .+-...|-+++||.+||..+.|.=-|. ..+.-++|.+.|+.-+ .
T Consensus 103 -----dlt~~em~~~l~~f~~-------~-~dh~~~d~~vv~~lsHG~~~~i~g~D~~~~~~~~v~l~~I~~~F~~~~Cp 169 (302)
T 3e4c_A 103 -----NLTASDMTTELEAFAH-------R-PEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCP 169 (302)
T ss_dssp -----SCCHHHHHHHHHHHHT-------C-GGGGGCSCEEEEEEEEEETTEEECTTCCSSSCCEECHHHHHHHTSTTTCG
T ss_pred -----CCCHHHHHHHHHHHHh-------h-hccCCCCEEEEEEeccCcCCeEEeecccccCCcEEEHHHHHHHHhhhcch
Confidence 3678888888873110 1 111235778899999999886533332 2355555554443210 0
Q ss_pred cCCCceEEEEecccccccc
Q 022224 207 SGNYKSLVFYLEACESGSI 225 (300)
Q Consensus 207 ~~~YkklVf~vEAC~SGSm 225 (300)
.=.=|=.+|+++||...-.
T Consensus 170 sL~gKPKlffIQACRG~~~ 188 (302)
T 3e4c_A 170 SLKDKPKVIIIQAARGDSP 188 (302)
T ss_dssp GGTTSCEEEEEEEECSSSC
T ss_pred hhcCCccEEEEECCCCCCC
Confidence 0033456899999986543
No 14
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=94.10 E-value=0.28 Score=46.11 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=88.5
Q ss_pred CCeeEEEEeccCCCC---Cchh--hhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCc
Q 022224 58 GTRWAVLLAGSNGFW---NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPK 132 (300)
Q Consensus 58 ~~~wAVLVagS~gw~---NYRH--qADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~i 132 (300)
....|+||+=+++-. .-|. ..|+-.+-++|++.|+. |..+.
T Consensus 59 ~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~-----V~~~~----------------------------- 104 (310)
T 2nn3_C 59 HRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFK-----VTVFP----------------------------- 104 (310)
T ss_dssp BCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCE-----EEEEE-----------------------------
T ss_pred CcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCE-----EEEec-----------------------------
Confidence 478999998776542 2344 36888999999999994 22222
Q ss_pred cCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCCc
Q 022224 133 DYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNYK 211 (300)
Q Consensus 133 DY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~Yk 211 (300)
++|.+.+.+.|+--. .+ +-...|-+++||.+||..|+|.-.|+. +.-++|.+.++.-. ..-.=|
T Consensus 105 -----dlt~~em~~~l~~f~-------~~--dh~~~D~~vv~ilSHG~~g~i~g~D~~-v~l~~I~~~f~~~~CpsL~gK 169 (310)
T 2nn3_C 105 -----NLKSEEINKFIQQTA-------EM--DHSDADCLLVAVLTAGELGMLYAKDTH-YKPDNLWYYFTADKCPTLAGK 169 (310)
T ss_dssp -----SCCHHHHHHHHHHHH-------SS--CGGGBSCEEEEEEEEEETTEEECSSCE-ECTHHHHGGGSTTTCGGGTTS
T ss_pred -----CCCHHHHHHHHHHHH-------Hh--ccCCCCEEEEEEeCCCCCCEEEecCCc-EEHHHHHHHhccccChhhcCC
Confidence 367788888887311 01 112357789999999999988776764 66566555443210 001224
Q ss_pred eEEEEeccccccccccc----------------cCCCCCcEEEEeecCCCCcccc
Q 022224 212 SLVFYLEACESGSIFEG----------------LLPEGLNIYATTASNAEESSWG 250 (300)
Q Consensus 212 klVf~vEAC~SGSmfe~----------------llp~~~NV~~iTASn~~ESSys 250 (300)
=.+|+++||...-+-.+ .+|...++++.=|+.++.-||-
T Consensus 170 PKlffiQACRG~~~d~g~~~~~~~~d~~~~~~~~iP~~aD~LiayST~pG~vS~R 224 (310)
T 2nn3_C 170 PKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPGYFSWR 224 (310)
T ss_dssp CEEEEEEEECCCCCCCCC-------------CCCCCCSTTEEEEECCCCCEEESS
T ss_pred ceEEEEecccCCccccCccccccccccccccccccCCCCCEEEEEeCCCCceeec
Confidence 45889999975433111 1333346666666666655553
No 15
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=93.39 E-value=0.42 Score=43.59 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=72.4
Q ss_pred CCeeEEEEeccCCCC----Cchhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcC
Q 022224 58 GTRWAVLLAGSNGFW----NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVP 131 (300)
Q Consensus 58 ~~~wAVLVagS~gw~----NYRHq--ADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~ 131 (300)
....|+||+=.++-. .-|.. .|+-.+-++|++.|+. |..+.
T Consensus 20 ~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~-----V~~~~---------------------------- 66 (277)
T 1nw9_B 20 PCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFM-----VEVKG---------------------------- 66 (277)
T ss_dssp SCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEE-----EEEEE----------------------------
T ss_pred cccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCE-----EEEEc----------------------------
Confidence 467999998776543 23544 5888999999999984 22222
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCC-------CcccCCCCCCcCHHHHHHHHHHH
Q 022224 132 KDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP-------GVLGMPTSRYIYADELIDVLKKK 204 (300)
Q Consensus 132 iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~-------g~l~fpd~~~L~a~dL~~~L~~M 204 (300)
++|.+.+.+.|+--. .+ .. ...|-+++++.+||.. |.+.-.|+..+.-++|.+.++.-
T Consensus 67 ------dlt~~em~~~l~~~~-------~~-~h-~~~D~~vv~ilSHG~~~~~~~~~g~iy~~D~~~v~l~~i~~~f~~~ 131 (277)
T 1nw9_B 67 ------DLTAKKMVLALLELA-------RQ-DH-GALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGT 131 (277)
T ss_dssp ------SCCHHHHHHHHHHHH-------HS-CC-TTCSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTT
T ss_pred ------CCCHHHHHHHHHHHH-------Hh-hc-ccCCeEEEEEeCCCCccccccCCCcEEecCCceeeHHHHHHHhccc
Confidence 367788888887211 01 11 2357888888999987 66654455445555555444311
Q ss_pred H-HcCCCceEEEEecccccc
Q 022224 205 H-ASGNYKSLVFYLEACESG 223 (300)
Q Consensus 205 ~-~~~~YkklVf~vEAC~SG 223 (300)
+ ..-.=|=.+|+++||...
T Consensus 132 ~CpsL~gKPKlffiQACRG~ 151 (277)
T 1nw9_B 132 SCPSLGGKPKLFFIQACGGE 151 (277)
T ss_dssp TCGGGTTSCEEEEEEEEC--
T ss_pred CChhHcCCCcEEEEeccCCC
Confidence 0 000224458899999754
No 16
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=92.84 E-value=0.83 Score=42.77 Aligned_cols=119 Identities=11% Similarity=0.119 Sum_probs=75.1
Q ss_pred CCeeEEEEeccCCCC--Cchhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCcc
Q 022224 58 GTRWAVLLAGSNGFW--NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKD 133 (300)
Q Consensus 58 ~~~wAVLVagS~gw~--NYRHq--ADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~iD 133 (300)
....|+||+=.++-. .-|.. .|+-.+-++|++.|+. |.++.
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~-----V~~~~------------------------------ 104 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFT-----IFPYG------------------------------ 104 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEE-----EEEEC------------------------------
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCE-----EEEcc------------------------------
Confidence 578999998776541 34544 6788999999999994 22222
Q ss_pred CCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCC----CcccCCCCCCcCHHHHHHHHHHHHH-cC
Q 022224 134 YTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP----GVLGMPTSRYIYADELIDVLKKKHA-SG 208 (300)
Q Consensus 134 Y~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~----g~l~fpd~~~L~a~dL~~~L~~M~~-~~ 208 (300)
++|.+.+.++|+--. .+ ..++..|-+++++.+||.. |+|.--|+..+.-++|.+.++.-+- .=
T Consensus 105 ----dlt~~em~~~l~~f~-------~~-~h~~~~D~~vv~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL 172 (316)
T 2fp3_A 105 ----NVNQDQFFKLLTMVT-------SS-SYVQNTECFVMVLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYL 172 (316)
T ss_dssp ----SCCHHHHHHHHHHHH-------TS-HHHHTCSCEEEEEESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGG
T ss_pred ----CCCHHHHHHHHHHHH-------HH-hhcCCCCEEEEEEccCCCccCCCCEEEeecCcEEeHHHHHHHhccccChhh
Confidence 467888888887211 11 1121467789999999998 8877777754665665554432100 00
Q ss_pred CCceEEEEecccccc
Q 022224 209 NYKSLVFYLEACESG 223 (300)
Q Consensus 209 ~YkklVf~vEAC~SG 223 (300)
.=|=.+|+++||...
T Consensus 173 ~gKPKlffiQACRG~ 187 (316)
T 2fp3_A 173 VNKPKVLMFPFARGD 187 (316)
T ss_dssp TTSCEEEEESCC---
T ss_pred cCCceEEEEecCCCC
Confidence 224458899999764
No 17
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=90.49 E-value=1.8 Score=36.98 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=80.8
Q ss_pred CCCeeEEEEeccCCCC----Cchhhh--HHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCc
Q 022224 57 VGTRWAVLLAGSNGFW----NYRHQA--DICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGV 130 (300)
Q Consensus 57 ~~~~wAVLVagS~gw~----NYRHqA--Dv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv 130 (300)
.....|+||+=.++-. .-|.-+ |+-.+-+++++.|+. |..+.
T Consensus 31 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~-----V~~~~--------------------------- 78 (167)
T 1pyo_A 31 RPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYD-----VHVLC--------------------------- 78 (167)
T ss_dssp SSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEE-----EEEEE---------------------------
T ss_pred CCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCE-----EEEee---------------------------
Confidence 3578999998776532 346554 889999999999994 22222
Q ss_pred CccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCC
Q 022224 131 PKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGN 209 (300)
Q Consensus 131 ~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~ 209 (300)
++|.+.+.+.|+--. .+ .+-...|-+++++.+||..|.|.-.|+..+.-++|...+..-+ ..=.
T Consensus 79 -------dlt~~em~~~l~~~~-------~~-~dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~l~~i~~~F~~~~CpsL~ 143 (167)
T 1pyo_A 79 -------DQTAQEMQEKLQNFA-------QL-PAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQ 143 (167)
T ss_dssp -------SCCHHHHHHHHHHHH-------TC-GGGGTSSEEEEEEESCEETTEEECTTSCEEEHHHHHHHTSTTTCGGGT
T ss_pred -------CCCHHHHHHHHHHhh-------hh-hhccCCCEEEEEeCCCCCCCeEEEeCCCEEcHHHHHHHhcccCChhHc
Confidence 367888888887211 00 0112468899999999999988887876566677666654210 0002
Q ss_pred CceEEEEecccccccc
Q 022224 210 YKSLVFYLEACESGSI 225 (300)
Q Consensus 210 YkklVf~vEAC~SGSm 225 (300)
=|=.+|++.||...-.
T Consensus 144 gKPKlffiQACRG~~~ 159 (167)
T 1pyo_A 144 NKPKMFFIQACRGDET 159 (167)
T ss_dssp TSCEEEEEESCSSSBC
T ss_pred CCCeEEEEECCCCCCC
Confidence 2445899999987543
No 18
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=85.94 E-value=1.9 Score=35.98 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=77.1
Q ss_pred CCeeEEEEeccCCCC----Cchhhh--HHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcC
Q 022224 58 GTRWAVLLAGSNGFW----NYRHQA--DICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVP 131 (300)
Q Consensus 58 ~~~wAVLVagS~gw~----NYRHqA--Dv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~ 131 (300)
....|+||+=.++-. .-|.-+ |+-.+-+++++.|+. |..+.
T Consensus 15 ~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~-----V~~~~---------------------------- 61 (146)
T 2dko_A 15 EMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYE-----VRNKN---------------------------- 61 (146)
T ss_dssp EEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCE-----EEEEE----------------------------
T ss_pred CceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCE-----EEEee----------------------------
Confidence 467899998776542 345555 889999999999996 22222
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCC
Q 022224 132 KDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNY 210 (300)
Q Consensus 132 iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~Y 210 (300)
+.|.+.+.+.|+--. .+ +-...|-+++++.+||..|.|.-.|+ .+.-++|...+..-+ ..=.=
T Consensus 62 ------dlt~~em~~~l~~~~-------~~--dh~~~dc~vv~ilSHG~~g~i~g~D~-~~~l~~i~~~F~~~~CpsL~g 125 (146)
T 2dko_A 62 ------DLTREEIVELMRDVS-------KE--DHSKRSSFVCVLLSHGEEGIIFGTNG-PVDLKKITNFFRGDRCRSLTG 125 (146)
T ss_dssp ------SCCHHHHHHHHHHHH-------HS--CCTTEEEEEEEEESCEETTEEEETTE-EEEHHHHHHTTSTTTCGGGTT
T ss_pred ------CCCHHHHHHHHHHHH-------Hh--hcCCCCeEEEEeccCCCCCEEEEeCC-cEeHHHHHHHhccccChhhcC
Confidence 367788888887311 01 11346889999999999998887777 366555555442110 00022
Q ss_pred ceEEEEeccccccc
Q 022224 211 KSLVFYLEACESGS 224 (300)
Q Consensus 211 kklVf~vEAC~SGS 224 (300)
|=.+|++.||...-
T Consensus 126 KPKlffiQACRG~~ 139 (146)
T 2dko_A 126 KPKLFIIQACRGTE 139 (146)
T ss_dssp SCEEEEEESCCSSB
T ss_pred CCeEEEEECCCCCC
Confidence 45588899998754
No 19
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=83.04 E-value=0.78 Score=39.14 Aligned_cols=120 Identities=17% Similarity=0.182 Sum_probs=79.0
Q ss_pred CCeeEEEEeccCCCC-----------Cchh--hhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCC
Q 022224 58 GTRWAVLLAGSNGFW-----------NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGD 124 (300)
Q Consensus 58 ~~~wAVLVagS~gw~-----------NYRH--qADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~ 124 (300)
...+|+||.=.++-. .-|. ..|+-.+-+++++.|+. |..++
T Consensus 22 ~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~-----V~~~~--------------------- 75 (164)
T 1qtn_A 22 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFE-----IKPHD--------------------- 75 (164)
T ss_dssp SCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCE-----EEEEE---------------------
T ss_pred CceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCE-----EEEec---------------------
Confidence 367999998765432 2333 47788999999999984 22222
Q ss_pred cccCCcCccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHH
Q 022224 125 DVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKK 204 (300)
Q Consensus 125 dvY~gv~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M 204 (300)
++|.+.+.+.|+--. .+ +-...|-+++++.+||..|.|.-.|+..+.-++|.+.+..-
T Consensus 76 -------------dlt~~em~~~l~~~~-------~~--dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~i~~i~~~F~~~ 133 (164)
T 1qtn_A 76 -------------DCTVEQIYEILKIYQ-------LM--DHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGL 133 (164)
T ss_dssp -------------SCCHHHHHHHHHHHH-------HS--CCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTT
T ss_pred -------------CCCHHHHHHHHHHHH-------Hh--hccCCCEEEEEeCCCCCCCEEEeeCCCEeeHHHHHHHhccc
Confidence 367888888887321 01 12346789999999999998888787656667776665431
Q ss_pred HHc-CCCceEEEEecccccccc
Q 022224 205 HAS-GNYKSLVFYLEACESGSI 225 (300)
Q Consensus 205 ~~~-~~YkklVf~vEAC~SGSm 225 (300)
+-. =.=|=.+|++.||...-.
T Consensus 134 ~CpsL~gKPKlFfiQACRG~~~ 155 (164)
T 1qtn_A 134 KCPSLAGKPKVFFIQACQGDNY 155 (164)
T ss_dssp TCGGGTTSCEEEEEESCSSSBC
T ss_pred cChhhcCCCeEEEEECCCCCCc
Confidence 000 022445889999987543
No 20
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=74.81 E-value=3.5 Score=37.78 Aligned_cols=110 Identities=6% Similarity=0.029 Sum_probs=70.7
Q ss_pred CCeeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcCccCCCC
Q 022224 58 GTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGE 137 (300)
Q Consensus 58 ~~~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~iDY~g~ 137 (300)
....||||+=.+ .|+-.+-+++++.|+. |..+.
T Consensus 42 ~rG~~LIinn~~--------~D~~~L~~~f~~LgF~-----V~~~~---------------------------------- 74 (272)
T 3h11_A 42 PLGICLIIDCIG--------NETELLRDTFTSLGYE-----VQKFL---------------------------------- 74 (272)
T ss_dssp SSEEEEEEESSC--------CCCSHHHHHHHHHTEE-----EEEEE----------------------------------
T ss_pred cceEEEEECCch--------HHHHHHHHHHHHCCCE-----EEEee----------------------------------
Confidence 467899988432 4777788888888874 22222
Q ss_pred CCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCC--CcCHHHHHHHHHHHHHcC-CCceEE
Q 022224 138 DVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSR--YIYADELIDVLKKKHASG-NYKSLV 214 (300)
Q Consensus 138 ~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~--~L~a~dL~~~L~~M~~~~-~YkklV 214 (300)
++|.+.+.+.|+--.. + .+-...|-+++++.+||..|.|.=-|+. .+.-++|.+.+..-+-.. .=|=.+
T Consensus 75 dlt~~em~~~l~~~~~-------~-~dh~~~d~~v~~ilSHG~~g~i~g~D~~~~~v~l~~i~~~f~~~~CpsL~gKPKl 146 (272)
T 3h11_A 75 HLSMHGISQILGQFAC-------M-PEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKM 146 (272)
T ss_dssp SCBHHHHHHHHHHHHT-------C-GGGGGCSEEEEEEEEEEETTEECBTSCCSSCEEHHHHHHHHSTTTCGGGTTSCEE
T ss_pred CCCHHHHHHHHHHHHh-------c-cccCCCCEEEEEEEcCCCCCeEEEEcCCcceEeHHHHHHHhccccChhhcCCCcE
Confidence 4688888888873110 0 1123578899999999999987666664 356666665554210000 234568
Q ss_pred EEeccccc
Q 022224 215 FYLEACES 222 (300)
Q Consensus 215 f~vEAC~S 222 (300)
|++.||..
T Consensus 147 ffiQACRG 154 (272)
T 3h11_A 147 FFIQNYVV 154 (272)
T ss_dssp EEEEEEEC
T ss_pred EEEECCCC
Confidence 99999985
No 21
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=70.16 E-value=2.4 Score=36.57 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=75.2
Q ss_pred CCeeEEEEeccCCCC----Cchhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcC
Q 022224 58 GTRWAVLLAGSNGFW----NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVP 131 (300)
Q Consensus 58 ~~~wAVLVagS~gw~----NYRHq--ADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~ 131 (300)
....|+||+=.++-. .-|.- .|+-.+-+++++.|+. |..+.
T Consensus 43 ~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~-----V~v~~---------------------------- 89 (173)
T 2ql9_A 43 KLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFD-----VIVYN---------------------------- 89 (173)
T ss_dssp EEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEE-----EEEEE----------------------------
T ss_pred CceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCE-----EEEEe----------------------------
Confidence 456899998776542 23544 6788999999999983 22222
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCC
Q 022224 132 KDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNY 210 (300)
Q Consensus 132 iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~Y 210 (300)
++|.+.+...|+--. .+ +-...|-+++++.+||..|.|.-.|+. +.-++|...+..-+ ..=.=
T Consensus 90 ------dlt~~em~~~l~~~s-------~~--dh~~~dc~vvvilSHG~~g~I~g~D~~-~~i~~I~~~F~~~~CpsL~g 153 (173)
T 2ql9_A 90 ------DCSCAKMQDLLKKAS-------EE--DHTNAACFACILLSHGEENVIYGKDGV-TPIKDLTAHFRGDRCKTLLE 153 (173)
T ss_dssp ------SCCHHHHHHHHHHHH-------TS--CCTTEEEEEEEEESCEETTEEEETTEE-EEHHHHHGGGSTTTCGGGTT
T ss_pred ------CCCHHHHHHHHHHHH-------Hh--hccCCCeEEEeecCCCCCCEEEEcCCc-EEHHHHHHHcCcccChhHcC
Confidence 367888888887310 11 113467899999999999988877774 55455544332100 00023
Q ss_pred ceEEEEeccccccc
Q 022224 211 KSLVFYLEACESGS 224 (300)
Q Consensus 211 kklVf~vEAC~SGS 224 (300)
|=.+|++.||...-
T Consensus 154 KPKlFfIQACRG~~ 167 (173)
T 2ql9_A 154 KPKLFFIQACRGTE 167 (173)
T ss_dssp SCEEEEEESCCSSB
T ss_pred CCeEEEEECCCCCC
Confidence 45688899998654
No 22
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=69.49 E-value=3.1 Score=36.14 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=77.1
Q ss_pred CCeeEEEEeccCCCC----Cchhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcC
Q 022224 58 GTRWAVLLAGSNGFW----NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVP 131 (300)
Q Consensus 58 ~~~wAVLVagS~gw~----NYRHq--ADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~gv~ 131 (300)
....|+||+=.++.. .-|.- .|+-.+-+++++.|+. |..+.
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~-----V~~~~---------------------------- 89 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFE-----VKCFN---------------------------- 89 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCE-----EEEEE----------------------------
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-----EEEEe----------------------------
Confidence 567899999887653 24443 5778999999999994 22222
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCC
Q 022224 132 KDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNY 210 (300)
Q Consensus 132 iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~Y 210 (300)
++|.+.+.+.|+-- . .+ +-...|-+++.+..||..|.|.-.|+. +.-++|.+.+..-+ ..=.=
T Consensus 90 ------dlt~~em~~~l~~~-~------~~--dh~~~dc~vvvilSHG~~g~I~g~D~~-v~l~~I~~~F~~~~CpsL~g 153 (179)
T 3p45_A 90 ------DLKAEELLLKIHEV-S------TV--SHADADCFVCVFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDKCHSLVG 153 (179)
T ss_dssp ------SCCHHHHHHHHHHH-H------TS--CCTTBSCEEEEEESCEETTEEECSSSE-EEHHHHHGGGSGGGCGGGTT
T ss_pred ------CCCHHHHHHHHHHH-h------hh--hcCCCCEEEEEEeccCCCCEEEEECCE-EEHHHHHHhcccccChhhCC
Confidence 46888888888831 1 01 123568899999999999988887876 66666666554211 00122
Q ss_pred ceEEEEeccccccccc
Q 022224 211 KSLVFYLEACESGSIF 226 (300)
Q Consensus 211 kklVf~vEAC~SGSmf 226 (300)
|=.+|++.||...-.=
T Consensus 154 KPKlFfIQACRG~~~d 169 (179)
T 3p45_A 154 KPKIFIIQACRGNQHD 169 (179)
T ss_dssp SCEEEEEECC------
T ss_pred CCcEEEEECCCCCCCC
Confidence 4568889999975433
No 23
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Probab=35.47 E-value=18 Score=34.12 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=20.1
Q ss_pred cCCCCCchhhhHHHH-HHHHHHhCCC
Q 022224 68 SNGFWNYRHQADICH-AYQLLRKGGL 92 (300)
Q Consensus 68 S~gw~NYRHqADv~~-~YqiLk~~Gi 92 (300)
.+-|.|+||.+||++ +|.+|+..++
T Consensus 97 ~npYHN~~HA~dV~q~~~~ll~~~~l 122 (347)
T 1tbf_A 97 NVAYHNWRHAFNTAQCMFAALKAGKI 122 (347)
T ss_dssp TSSSSSHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCcCHHHHHHHHHHHHHHHHcccc
Confidence 478999999999985 6777776654
No 24
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major}
Probab=34.89 E-value=18 Score=34.38 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=20.0
Q ss_pred cCCCCCchhhhHHHH-HHHHHHhCCC
Q 022224 68 SNGFWNYRHQADICH-AYQLLRKGGL 92 (300)
Q Consensus 68 S~gw~NYRHqADv~~-~YqiLk~~Gi 92 (300)
.+-|.|++|.+||++ +|.+|++.++
T Consensus 96 ~npYHN~~HA~dV~q~~~~ll~~~~l 121 (359)
T 2r8q_A 96 RVPYHNFYHVVDVCQTLHTYLYTGKA 121 (359)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHTSCG
T ss_pred CCccccHHHHHHHHHHHHHHHHcccc
Confidence 478999999999985 6777776654
No 25
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=34.55 E-value=33 Score=31.10 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=24.2
Q ss_pred EEEeccCCCC-------------------CchhhhHHHHHHHHHHhC-CCCCCCEEE
Q 022224 63 VLLAGSNGFW-------------------NYRHQADICHAYQLLRKG-GLKDENIIV 99 (300)
Q Consensus 63 VLVagS~gw~-------------------NYRHqADv~~~YqiLk~~-GipdenIIl 99 (300)
+||+|..|.. +.+-.|+ .+-++|.+. |||++.|++
T Consensus 65 lIvSGG~g~~t~~~~~~v~~~~~y~~l~~~~~sEA~--~m~~~l~~~~GVp~~~Ill 119 (266)
T 3ca8_A 65 LLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEAT--ILADIAHQFWHIPHEKIWI 119 (266)
T ss_dssp EEEECCSSTTHHHHHHHHHTCTTGGGSCCTTSCHHH--HHHHHHHHTTCCCGGGEEE
T ss_pred EEEECCCCCcccchhhhhccccccccccCCCCCHHH--HHHHHHHHhcCCCHHHEEe
Confidence 6889877752 2333344 455678887 999999976
No 26
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2
Probab=33.21 E-value=16 Score=34.73 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.1
Q ss_pred CCCCCchhhhHHHH-HHHHHHhCCC
Q 022224 69 NGFWNYRHQADICH-AYQLLRKGGL 92 (300)
Q Consensus 69 ~gw~NYRHqADv~~-~YqiLk~~Gi 92 (300)
+-|.|+||.+||++ +|.+|.+.|+
T Consensus 79 npYHN~~HA~dV~q~~~~ll~~~~l 103 (365)
T 1taz_A 79 NPYHNQIHAADVTQTVHCFLLRTGM 103 (365)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHSG
T ss_pred CCCcCHHHHHHHHHHHHHHHHhhhH
Confidence 67999999999985 6778888774
No 27
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ...
Probab=28.10 E-value=21 Score=33.73 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=18.9
Q ss_pred cCCCCCchhhhHHHH-HHHHHHhCCC
Q 022224 68 SNGFWNYRHQADICH-AYQLLRKGGL 92 (300)
Q Consensus 68 S~gw~NYRHqADv~~-~YqiLk~~Gi 92 (300)
.+-|.|+||.+||++ +|.+|+..++
T Consensus 92 ~npYHN~~HA~dV~q~~~~ll~~~~l 117 (349)
T 1y2k_A 92 DVAYHNNIHAADVVQSTHVLLSTPAL 117 (349)
T ss_dssp TCSSSSHHHHHHHHHHHHHHHTCGGG
T ss_pred CCCccCHHHHHHHHHHHHHHHhhhhH
Confidence 468999999999996 5666665443
No 28
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=26.54 E-value=26 Score=33.17 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=19.7
Q ss_pred cCCCCCchhhhHHHH-HHHHHHhCCC
Q 022224 68 SNGFWNYRHQADICH-AYQLLRKGGL 92 (300)
Q Consensus 68 S~gw~NYRHqADv~~-~YqiLk~~Gi 92 (300)
.+-|.|.||.+||++ +|.+|++.|+
T Consensus 78 ~npYHN~~HA~dV~q~~~~ll~~~~l 103 (345)
T 3itu_A 78 DPPYHNWMHAFSVSHFCYLLYKNLEL 103 (345)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCcCcHHHHHHHHHHHHHHhccch
Confidence 367999999999985 4777777664
No 29
>1cvr_A Gingipain R, RGPB; caspases, cysteine proteinase, hydrolase-hydrolase inhibitor; HET: H37; 2.00A {Porphyromonas gingivalis} SCOP: b.1.18.12 c.17.1.2
Probab=23.91 E-value=34 Score=33.23 Aligned_cols=63 Identities=19% Similarity=0.334 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEE
Q 022224 137 EDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFY 216 (300)
Q Consensus 137 ~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~YkklVf~ 216 (300)
.+|+++++.+.|.. .-.+|.|.|||++..+... . +..+|+ +.+. +..|-=+++
T Consensus 188 p~~~~~~I~~~ln~------------------G~~ivnY~GHG~~~~w~~e--~-~~~~dv----~~l~--N~~~lPl~i 240 (435)
T 1cvr_A 188 PGVTPKNIIDAFNG------------------GISLVNYTGHGSETAWGTS--H-FGTTHV----KQLT--NSNQLPFIF 240 (435)
T ss_dssp SSCCHHHHHHHHHH------------------CCSEEEEESCBCSSBBTTT--C-CBTTTG----GGCC--CTTCCCEEE
T ss_pred CccCHHHHHHHHhC------------------CCeEEEEecCCCccccccc--c-cChhhH----Hhhc--CCCCCcEEE
Confidence 35677777766651 2268899999998754432 2 443332 2231 223344677
Q ss_pred eccccccccc
Q 022224 217 LEACESGSIF 226 (300)
Q Consensus 217 vEAC~SGSmf 226 (300)
.=||+.|.+.
T Consensus 241 t~tC~~g~Fd 250 (435)
T 1cvr_A 241 DVACVNGDFL 250 (435)
T ss_dssp EESSSTTCTT
T ss_pred EeECcCCCCC
Confidence 8999999975
No 30
>3m7v_A Phosphopentomutase; structural genomics, nysgrc, cytoplasm, isomerase, manganese binding, PSI-2, protein structure initiative; 2.00A {Streptococcus mutans}
Probab=23.40 E-value=26 Score=31.12 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=16.2
Q ss_pred CccccCCCCCeEEEEEecCCCC
Q 022224 160 GKVVDSGPNDHIFIFYSDHGGP 181 (300)
Q Consensus 160 ~kvL~S~~~D~VFIY~tgHGg~ 181 (300)
|++|+.=+++.|+||.||||.+
T Consensus 324 g~~l~~L~entliiftsDnG~~ 345 (413)
T 3m7v_A 324 PEIIAAMKVDDLLLITADHGND 345 (413)
T ss_dssp HHHHHTCCTTEEEEEECSSBCC
T ss_pred HHHHHhcCCCCEEEEEccCCCC
Confidence 4555444468899999999974
No 31
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=23.27 E-value=54 Score=25.21 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCC
Q 022224 137 EDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP 181 (300)
Q Consensus 137 ~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~ 181 (300)
.+.|...|..+|+ |.|+-.+++.||+|....-.|
T Consensus 28 ~~~tv~~~~~~lR-----------krL~l~~~~alFlyVnn~~~P 61 (91)
T 4gdk_A 28 RTRTIQGLIDFIK-----------KFLKLVASEQLFIYVNQSFAP 61 (91)
T ss_dssp TTCBHHHHHHHHH-----------HHTTCCSSSCCEEEETTTBCC
T ss_pred CCCCHHHHHHHHH-----------HHhCCCCCCeEEEEECCccCC
Confidence 4689999999999 335667889999998654433
No 32
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=23.06 E-value=43 Score=34.81 Aligned_cols=26 Identities=19% Similarity=0.539 Sum_probs=20.7
Q ss_pred cCCCCCchhhhHHHH-HHHHHHhCCCC
Q 022224 68 SNGFWNYRHQADICH-AYQLLRKGGLK 93 (300)
Q Consensus 68 S~gw~NYRHqADv~~-~YqiLk~~Gip 93 (300)
.+-|.|++|.+||++ +|.+|++.++.
T Consensus 612 ~~pyHN~~Ha~dV~q~~~~~l~~~~~~ 638 (878)
T 3bjc_A 612 NVAYHNWRHAFNTAQCMFAALKAGKIQ 638 (878)
T ss_dssp TSSSSSHHHHHHHHHHHHHHHHTTCCG
T ss_pred CCCCccHHHHHHHHHHHHHHHhccchh
Confidence 478999999999985 67777776643
No 33
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A*
Probab=21.58 E-value=39 Score=31.92 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.0
Q ss_pred cCCCCCchhhhHHH-HHHHHHHhCC
Q 022224 68 SNGFWNYRHQADIC-HAYQLLRKGG 91 (300)
Q Consensus 68 S~gw~NYRHqADv~-~~YqiLk~~G 91 (300)
.+-|.|++|.+||+ .+|.+|++.|
T Consensus 95 ~npYHN~~HA~dV~q~~~~ll~~~~ 119 (345)
T 3v93_A 95 PNPYHNAIHAADVLQGTFSLVSAAK 119 (345)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHCH
T ss_pred CCCCcChHHHHHHHHHHHHHHHhch
Confidence 46799999999998 5677888877
No 34
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Probab=20.28 E-value=49 Score=31.62 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=18.7
Q ss_pred cCCCCCchhhhHHHH-HHHHHHhCCC
Q 022224 68 SNGFWNYRHQADICH-AYQLLRKGGL 92 (300)
Q Consensus 68 S~gw~NYRHqADv~~-~YqiLk~~Gi 92 (300)
.+-|.|+||.+||++ +|.+|+..++
T Consensus 79 ~npYHN~~HA~dV~q~~~~ll~~~~l 104 (377)
T 1f0j_A 79 DVAYHNSLHAADVAQSTHVLLSTPAL 104 (377)
T ss_dssp TSSSSSHHHHHHHHHHHHHHHTCGGG
T ss_pred CCCccCHHHHHHHHHHHHHHHhcchh
Confidence 468999999999996 4555555443
No 35
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A*
Probab=20.06 E-value=45 Score=31.24 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=20.3
Q ss_pred cCCCCCchhhhHHHH-HHHHHHhCCC
Q 022224 68 SNGFWNYRHQADICH-AYQLLRKGGL 92 (300)
Q Consensus 68 S~gw~NYRHqADv~~-~YqiLk~~Gi 92 (300)
.+-|.|.+|.+||++ +|.+|...|+
T Consensus 71 ~npYHN~~Ha~dV~q~~~~~l~~~~l 96 (329)
T 3dyn_A 71 NNPFHNFRHCFCVAQMMYSMVWLCSL 96 (329)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHTTH
T ss_pred CCCCcCcHHHhHHHHHHHHHHHhhhH
Confidence 467999999999985 5778887763
Done!