Query 022225
Match_columns 300
No_of_seqs 187 out of 1693
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 15:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 83.5 1 3.5E-05 29.2 3.2 29 121-149 16-44 (56)
2 1z2q_A LM5-1; membrane protein 79.7 1.5 5E-05 31.1 3.2 26 122-147 19-46 (84)
3 3j21_g 50S ribosomal protein L 76.8 1 3.4E-05 28.8 1.4 29 121-149 11-39 (51)
4 1x4u_A Zinc finger, FYVE domai 69.8 1.6 5.6E-05 30.8 1.3 24 124-147 14-39 (84)
5 2yw8_A RUN and FYVE domain-con 66.3 1.9 6.5E-05 30.3 1.0 25 123-147 18-44 (82)
6 1wfk_A Zinc finger, FYVE domai 65.4 2 7E-05 30.7 1.1 26 122-147 7-34 (88)
7 1joc_A EEA1, early endosomal a 64.4 2.1 7.1E-05 32.8 1.0 24 124-147 69-94 (125)
8 1vfy_A Phosphatidylinositol-3- 60.0 2.3 7.8E-05 29.2 0.4 22 126-147 13-36 (73)
9 2dkt_A Ring finger and CHY zin 58.6 2.4 8.2E-05 33.2 0.4 46 118-163 77-126 (143)
10 1dvp_A HRS, hepatocyte growth 57.1 2.9 9.9E-05 35.1 0.7 25 124-148 161-187 (220)
11 1y02_A CARP2, FYVE-ring finger 54.7 2.7 9.1E-05 32.0 0.1 23 125-147 20-44 (120)
12 3t7l_A Zinc finger FYVE domain 54.2 4 0.00014 29.1 1.0 25 123-147 19-45 (90)
13 2cr8_A MDM4 protein; ZF-ranbp 53.8 4.5 0.00015 25.6 1.0 23 124-146 11-33 (53)
14 3zyq_A Hepatocyte growth facto 53.5 6.6 0.00023 33.1 2.4 24 125-148 165-190 (226)
15 2c6a_A Ubiquitin-protein ligas 51.3 5.5 0.00019 24.6 1.1 24 123-146 12-35 (46)
16 3arc_T Photosystem II reaction 46.5 38 0.0013 19.1 4.0 16 69-84 16-31 (32)
17 3u5e_m 60S ribosomal protein L 37.7 11 0.00039 28.4 1.2 25 123-147 92-118 (128)
18 2vrw_B P95VAV, VAV1, proto-onc 33.0 10 0.00034 34.6 0.3 32 121-152 354-393 (406)
19 2dkt_A Ring finger and CHY zin 30.8 7 0.00024 30.5 -1.0 31 126-156 103-136 (143)
20 1wil_A KIAA1045 protein; ring 30.2 36 0.0012 24.0 2.6 26 123-148 14-39 (89)
21 3mpx_A FYVE, rhogef and PH dom 30.1 11 0.00037 34.6 0.0 25 123-147 374-400 (434)
22 3j20_Y 30S ribosomal protein S 26.8 14 0.00047 23.3 0.0 24 122-145 17-44 (50)
23 1twf_L ABC10-alpha, DNA-direct 23.9 36 0.0012 23.0 1.7 27 123-149 27-56 (70)
24 3gox_A Restriction endonucleas 23.9 15 0.00052 30.0 -0.2 18 119-136 70-87 (200)
25 2pg3_A Queuosine biosynthesis 23.2 22 0.00074 29.5 0.6 17 134-150 191-207 (232)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=83.54 E-value=1 Score=29.23 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=24.2
Q ss_pred CcCeecccccccCCCCCCCCCcchhhhhc
Q 022225 121 SRSVGFCDRCQNGKPPRCHHCSVCQRCVL 149 (300)
Q Consensus 121 ~~~~~~C~~C~~~kP~RshHC~~C~~CV~ 149 (300)
......|.+|...-|+|+..|+.||.--+
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred HhchhhhccccCcCCcccccccCCCCCCC
Confidence 44678999999999999999998875433
No 2
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=79.68 E-value=1.5 Score=31.06 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=18.4
Q ss_pred cCeecccccccC--CCCCCCCCcchhhh
Q 022225 122 RSVGFCDRCQNG--KPPRCHHCSVCQRC 147 (300)
Q Consensus 122 ~~~~~C~~C~~~--kP~RshHC~~C~~C 147 (300)
.....|..|+.. --.|-|||+.||+-
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcE
Confidence 345578888743 34688999999874
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=76.84 E-value=1 Score=28.83 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=24.2
Q ss_pred CcCeecccccccCCCCCCCCCcchhhhhc
Q 022225 121 SRSVGFCDRCQNGKPPRCHHCSVCQRCVL 149 (300)
Q Consensus 121 ~~~~~~C~~C~~~kP~RshHC~~C~~CV~ 149 (300)
......|.+|....|+++..|+.||.--+
T Consensus 11 ~~~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 11 IFKKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SSSEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred HhCCccCCCCCCcCCCCceecCCCCCccc
Confidence 34578899999999999999999986533
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.76 E-value=1.6 Score=30.77 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=16.6
Q ss_pred eecccccccC--CCCCCCCCcchhhh
Q 022225 124 VGFCDRCQNG--KPPRCHHCSVCQRC 147 (300)
Q Consensus 124 ~~~C~~C~~~--kP~RshHC~~C~~C 147 (300)
...|..|+.. --.|-|||+.||+-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 3467777742 34688999999873
No 5
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=66.35 E-value=1.9 Score=30.30 Aligned_cols=25 Identities=28% Similarity=0.739 Sum_probs=17.5
Q ss_pred CeecccccccC--CCCCCCCCcchhhh
Q 022225 123 SVGFCDRCQNG--KPPRCHHCSVCQRC 147 (300)
Q Consensus 123 ~~~~C~~C~~~--kP~RshHC~~C~~C 147 (300)
....|..|+.. --.|-|||+.||+-
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v 44 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHI 44 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCE
Confidence 34568888742 34688999999874
No 6
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.39 E-value=2 Score=30.65 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=18.3
Q ss_pred cCeecccccccC--CCCCCCCCcchhhh
Q 022225 122 RSVGFCDRCQNG--KPPRCHHCSVCQRC 147 (300)
Q Consensus 122 ~~~~~C~~C~~~--kP~RshHC~~C~~C 147 (300)
.....|..|+.. --.|-|||+.||+-
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCE
Confidence 344578888742 34688999999873
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.36 E-value=2.1 Score=32.76 Aligned_cols=24 Identities=38% Similarity=0.773 Sum_probs=16.9
Q ss_pred eecccccccC--CCCCCCCCcchhhh
Q 022225 124 VGFCDRCQNG--KPPRCHHCSVCQRC 147 (300)
Q Consensus 124 ~~~C~~C~~~--kP~RshHC~~C~~C 147 (300)
...|..|... --.|-|||+.||+-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE
Confidence 3467777742 34688999999873
No 8
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=60.00 E-value=2.3 Score=29.16 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=16.1
Q ss_pred cccccccC--CCCCCCCCcchhhh
Q 022225 126 FCDRCQNG--KPPRCHHCSVCQRC 147 (300)
Q Consensus 126 ~C~~C~~~--kP~RshHC~~C~~C 147 (300)
.|..|+.. --.|-|||+.||+-
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v 36 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGV 36 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCE
T ss_pred cccCCCCccCCccccccCCCCCEE
Confidence 58788742 34588999999873
No 9
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=58.57 E-value=2.4 Score=33.18 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=30.8
Q ss_pred CCCCcCeecccccccCCCCC-CCCCcchhhhhcC---CCccccccccccc
Q 022225 118 RGPSRSVGFCDRCQNGKPPR-CHHCSVCQRCVLK---MDHHCVWVVNCVG 163 (300)
Q Consensus 118 ~~~~~~~~~C~~C~~~kP~R-shHC~~C~~CV~~---~DHHCpwi~nCIG 163 (300)
++......||.+|+.|.+++ .+||..||-|... -=-||.--|.|+.
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 45556677999999986554 5778888887764 2345665555543
No 10
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=57.06 E-value=2.9 Score=35.09 Aligned_cols=25 Identities=32% Similarity=0.712 Sum_probs=18.5
Q ss_pred eecccccccC--CCCCCCCCcchhhhh
Q 022225 124 VGFCDRCQNG--KPPRCHHCSVCQRCV 148 (300)
Q Consensus 124 ~~~C~~C~~~--kP~RshHC~~C~~CV 148 (300)
...|..|+.. --.|-|||+.||+-+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3689888843 346889999998743
No 11
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=54.67 E-value=2.7 Score=31.96 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=16.6
Q ss_pred ecccccccC--CCCCCCCCcchhhh
Q 022225 125 GFCDRCQNG--KPPRCHHCSVCQRC 147 (300)
Q Consensus 125 ~~C~~C~~~--kP~RshHC~~C~~C 147 (300)
..|..|+.. --.|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 467777742 34688999999873
No 12
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=54.21 E-value=4 Score=29.14 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=17.1
Q ss_pred CeecccccccC--CCCCCCCCcchhhh
Q 022225 123 SVGFCDRCQNG--KPPRCHHCSVCQRC 147 (300)
Q Consensus 123 ~~~~C~~C~~~--kP~RshHC~~C~~C 147 (300)
....|..|+.. --.|-|||+.||+-
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCE
Confidence 34568888732 34578999999873
No 13
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=53.82 E-value=4.5 Score=25.59 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=15.9
Q ss_pred eecccccccCCCCCCCCCcchhh
Q 022225 124 VGFCDRCQNGKPPRCHHCSVCQR 146 (300)
Q Consensus 124 ~~~C~~C~~~kP~RshHC~~C~~ 146 (300)
.-.|.+|+..-||-..||..|-.
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTCC
T ss_pred eeecccccccCCCccchhHHHHH
Confidence 34578888777777777776643
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.51 E-value=6.6 Score=33.06 Aligned_cols=24 Identities=33% Similarity=0.750 Sum_probs=17.3
Q ss_pred ecccccccC--CCCCCCCCcchhhhh
Q 022225 125 GFCDRCQNG--KPPRCHHCSVCQRCV 148 (300)
Q Consensus 125 ~~C~~C~~~--kP~RshHC~~C~~CV 148 (300)
..|..|+.. ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 478888832 234789999998843
No 15
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=51.27 E-value=5.5 Score=24.63 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=18.2
Q ss_pred CeecccccccCCCCCCCCCcchhh
Q 022225 123 SVGFCDRCQNGKPPRCHHCSVCQR 146 (300)
Q Consensus 123 ~~~~C~~C~~~kP~RshHC~~C~~ 146 (300)
..-.|.+|+..-||-..||..|-.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCC
T ss_pred ceEecccccccCCCccchhhHHHh
Confidence 345699999888888888877743
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=46.51 E-value=38 Score=19.12 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=11.7
Q ss_pred HHHHHHhhcCCCCCCC
Q 022225 69 WSYVMVVFWDPGSVPE 84 (300)
Q Consensus 69 ~sy~~~~~~dPG~vp~ 84 (300)
..++...|.||-.+++
T Consensus 16 iiFFAI~FRePPri~~ 31 (32)
T 3arc_T 16 LFFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHHTSCCCCCC-
T ss_pred HHHHhhhhcCCCCCCC
Confidence 3467888999988764
No 17
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=37.67 E-value=11 Score=28.40 Aligned_cols=25 Identities=28% Similarity=0.814 Sum_probs=21.5
Q ss_pred CeecccccccCCCCCCCCCc--chhhh
Q 022225 123 SVGFCDRCQNGKPPRCHHCS--VCQRC 147 (300)
Q Consensus 123 ~~~~C~~C~~~kP~RshHC~--~C~~C 147 (300)
....|.+|...-|+|+..|+ .||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 45799999999999999999 48763
No 18
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=33.01 E-value=10 Score=34.60 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=22.3
Q ss_pred CcCeecccccccCC---CCCCCCCcchhh-----hhcCCC
Q 022225 121 SRSVGFCDRCQNGK---PPRCHHCSVCQR-----CVLKMD 152 (300)
Q Consensus 121 ~~~~~~C~~C~~~k---P~RshHC~~C~~-----CV~~~D 152 (300)
.....+|..|+..- -.|-|||+.|+. |..+..
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 34678999999542 468899988865 555444
No 19
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=30.77 E-value=7 Score=30.52 Aligned_cols=31 Identities=29% Similarity=0.794 Sum_probs=22.3
Q ss_pred cccccccCCCCCCCCCcchhhhhc--CC-Ccccc
Q 022225 126 FCDRCQNGKPPRCHHCSVCQRCVL--KM-DHHCV 156 (300)
Q Consensus 126 ~C~~C~~~kP~RshHC~~C~~CV~--~~-DHHCp 156 (300)
.|..|++-+.+--.||..||.|+. .. +|.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 455555666778899999999954 33 48774
No 20
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=30.19 E-value=36 Score=23.98 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=21.7
Q ss_pred CeecccccccCCCCCCCCCcchhhhh
Q 022225 123 SVGFCDRCQNGKPPRCHHCSVCQRCV 148 (300)
Q Consensus 123 ~~~~C~~C~~~kP~RshHC~~C~~CV 148 (300)
....|..|..+--.--.-|++|+|+.
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCcccCccccccccceeccccccccc
Confidence 45689999999888888899999964
No 21
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=30.08 E-value=11 Score=34.59 Aligned_cols=25 Identities=32% Similarity=0.701 Sum_probs=0.0
Q ss_pred CeecccccccC--CCCCCCCCcchhhh
Q 022225 123 SVGFCDRCQNG--KPPRCHHCSVCQRC 147 (300)
Q Consensus 123 ~~~~C~~C~~~--kP~RshHC~~C~~C 147 (300)
...-|..|+.. --.|-|||+.||+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp ---------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCE
Confidence 34568888742 23478999999984
No 22
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.85 E-value=14 Score=23.28 Aligned_cols=24 Identities=33% Similarity=0.751 Sum_probs=14.0
Q ss_pred cCeecccccccC---CC-CCCCCCcchh
Q 022225 122 RSVGFCDRCQNG---KP-PRCHHCSVCQ 145 (300)
Q Consensus 122 ~~~~~C~~C~~~---kP-~RshHC~~C~ 145 (300)
...++|++|..- .+ ...++|..|+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred EecccCCCCCCceEEecCCCeEECCCCC
Confidence 457889999751 11 1235666665
No 23
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.94 E-value=36 Score=22.97 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=19.1
Q ss_pred CeecccccccC---CCCCCCCCcchhhhhc
Q 022225 123 SVGFCDRCQNG---KPPRCHHCSVCQRCVL 149 (300)
Q Consensus 123 ~~~~C~~C~~~---kP~RshHC~~C~~CV~ 149 (300)
..-.|..|... ++.-+-||+.|+.-|+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 44569999854 5566778999987554
No 24
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=23.92 E-value=15 Score=30.01 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=14.5
Q ss_pred CCCcCeecccccccCCCC
Q 022225 119 GPSRSVGFCDRCQNGKPP 136 (300)
Q Consensus 119 ~~~~~~~~C~~C~~~kP~ 136 (300)
+.....+.|.+|..+||.
T Consensus 70 ~~~~G~K~C~~Cg~~Kp~ 87 (200)
T 3gox_A 70 GKGYDKKICNICHILKNT 87 (200)
T ss_dssp STTSSEEECTTTCBEEEG
T ss_pred cccCCCeECCCCCCCcch
Confidence 566778999999988873
No 25
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=23.24 E-value=22 Score=29.50 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=13.8
Q ss_pred CCCCCCCCcchhhhhcC
Q 022225 134 KPPRCHHCSVCQRCVLK 150 (300)
Q Consensus 134 kP~RshHC~~C~~CV~~ 150 (300)
++.|..||..|+.|..|
T Consensus 191 ~~~~~~~CG~C~~C~~r 207 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLR 207 (232)
T ss_dssp TSCCTTTTSCSHHHHHH
T ss_pred CCCCCCcCCcCHhHHHH
Confidence 45566899999999876
Done!