Query 022226
Match_columns 300
No_of_seqs 118 out of 1209
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:59:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 5.2E-37 1.1E-41 282.6 29.0 267 2-270 10-334 (358)
2 PRK10532 threonine and homoser 100.0 4.7E-31 1E-35 238.2 26.2 255 3-273 10-290 (293)
3 PRK11272 putative DMT superfam 100.0 1.8E-30 4E-35 234.2 26.4 250 7-267 10-288 (292)
4 PRK11453 O-acetylserine/cystei 100.0 4.7E-30 1E-34 232.4 26.6 249 7-267 6-290 (299)
5 PRK11689 aromatic amino acid e 100.0 2.8E-29 6E-34 226.9 25.2 247 2-266 1-289 (295)
6 PRK15430 putative chlorampheni 100.0 1.1E-28 2.3E-33 223.2 24.0 260 2-269 5-290 (296)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 9.9E-28 2.2E-32 212.4 24.0 230 17-259 1-259 (260)
8 TIGR00817 tpt Tpt phosphate/ph 99.9 1.3E-25 2.9E-30 203.5 23.0 242 21-266 18-295 (302)
9 TIGR03340 phn_DUF6 phosphonate 99.9 6.7E-24 1.4E-28 190.5 23.6 246 7-261 3-280 (281)
10 TIGR00688 rarD rarD protein. T 99.9 2.3E-23 5.1E-28 184.4 23.9 228 4-239 1-255 (256)
11 PTZ00343 triose or hexose phos 99.9 1.1E-22 2.4E-27 187.8 24.6 244 17-265 61-349 (350)
12 COG0697 RhaT Permeases of the 99.9 1.1E-20 2.3E-25 169.1 26.4 251 4-265 6-288 (292)
13 COG5006 rhtA Threonine/homoser 99.9 4.6E-21 9.9E-26 162.6 19.6 248 6-265 13-283 (292)
14 PF06027 DUF914: Eukaryotic pr 99.9 4.4E-19 9.5E-24 160.9 26.3 256 12-271 20-312 (334)
15 KOG4510 Permease of the drug/m 99.8 5.9E-21 1.3E-25 163.0 4.1 249 5-266 38-327 (346)
16 COG2962 RarD Predicted permeas 99.8 2.6E-17 5.6E-22 143.2 22.9 261 3-270 5-289 (293)
17 TIGR00776 RhaT RhaT L-rhamnose 99.8 3E-17 6.4E-22 147.9 22.0 239 6-264 2-288 (290)
18 PF08449 UAA: UAA transporter 99.6 1.7E-12 3.7E-17 117.8 24.6 231 33-269 31-302 (303)
19 PF00892 EamA: EamA-like trans 99.5 5E-14 1.1E-18 110.1 8.4 125 135-263 1-125 (126)
20 KOG2765 Predicted membrane pro 99.5 1.4E-12 3E-17 117.0 14.8 197 77-273 165-399 (416)
21 KOG1441 Glucose-6-phosphate/ph 99.4 2.1E-12 4.5E-17 116.2 13.7 247 22-272 34-315 (316)
22 COG2510 Predicted membrane pro 99.4 3.6E-12 7.9E-17 97.7 12.5 132 130-264 8-139 (140)
23 COG2510 Predicted membrane pro 99.2 2E-10 4.3E-15 88.3 10.1 123 5-129 3-127 (140)
24 PF00892 EamA: EamA-like trans 99.1 1.9E-10 4.1E-15 89.7 8.4 107 15-125 1-108 (126)
25 KOG1444 Nucleotide-sugar trans 99.1 5.2E-08 1.1E-12 86.5 22.6 265 4-272 11-308 (314)
26 TIGR03340 phn_DUF6 phosphonate 99.0 3.6E-09 7.9E-14 94.9 13.2 130 130-264 6-135 (281)
27 TIGR00950 2A78 Carboxylate/Ami 98.9 1.8E-08 3.9E-13 89.0 13.8 116 4-124 127-245 (260)
28 PRK15430 putative chlorampheni 98.9 8.9E-09 1.9E-13 93.1 11.5 134 126-263 7-144 (296)
29 KOG1580 UDP-galactose transpor 98.9 4.5E-08 9.8E-13 83.1 13.9 181 82-263 96-312 (337)
30 KOG2766 Predicted membrane pro 98.9 2E-08 4.4E-13 86.2 10.7 216 33-263 47-298 (336)
31 KOG2234 Predicted UDP-galactos 98.9 2.2E-06 4.8E-11 77.3 24.2 257 7-269 17-327 (345)
32 TIGR00688 rarD rarD protein. T 98.9 2.8E-08 6E-13 87.9 11.6 133 128-263 3-141 (256)
33 PRK02971 4-amino-4-deoxy-L-ara 98.8 1E-08 2.2E-13 81.0 6.6 74 194-267 50-125 (129)
34 PF04142 Nuc_sug_transp: Nucle 98.8 4.2E-07 9.1E-12 79.8 16.1 184 67-255 13-244 (244)
35 PF03151 TPT: Triose-phosphate 98.8 1.1E-07 2.5E-12 77.1 11.6 134 130-264 5-153 (153)
36 PF13536 EmrE: Multidrug resis 98.7 4.3E-08 9.4E-13 75.8 7.6 108 160-268 3-110 (113)
37 KOG1581 UDP-galactose transpor 98.7 8.9E-07 1.9E-11 78.1 16.3 229 33-268 50-317 (327)
38 PRK10532 threonine and homoser 98.7 4E-07 8.6E-12 82.3 14.0 119 5-129 148-269 (293)
39 PLN00411 nodulin MtN21 family 98.7 2.4E-07 5.2E-12 85.9 12.4 133 130-264 18-156 (358)
40 KOG1443 Predicted integral mem 98.7 4.7E-06 1E-10 73.6 19.2 243 18-263 30-314 (349)
41 PRK11272 putative DMT superfam 98.6 7.8E-07 1.7E-11 80.3 12.5 128 130-264 13-141 (292)
42 PRK11453 O-acetylserine/cystei 98.6 9.5E-07 2.1E-11 80.0 12.3 123 130-264 9-132 (299)
43 PRK15051 4-amino-4-deoxy-L-ara 98.5 4.8E-07 1E-11 69.7 8.2 68 197-264 42-109 (111)
44 TIGR00817 tpt Tpt phosphate/ph 98.5 1.6E-06 3.4E-11 78.7 12.2 120 140-263 17-136 (302)
45 PTZ00343 triose or hexose phos 98.4 3.9E-06 8.5E-11 77.7 12.2 124 140-265 64-187 (350)
46 PF06800 Sugar_transport: Suga 98.4 2.5E-05 5.4E-10 68.9 16.4 181 68-261 42-268 (269)
47 PRK11689 aromatic amino acid e 98.4 5.4E-06 1.2E-10 74.9 12.6 126 130-265 9-138 (295)
48 PF13536 EmrE: Multidrug resis 98.3 8.1E-07 1.8E-11 68.6 5.4 83 39-123 2-86 (113)
49 COG5070 VRG4 Nucleotide-sugar 98.3 5.3E-05 1.2E-09 64.2 14.7 247 14-268 15-300 (309)
50 COG0697 RhaT Permeases of the 98.1 7E-05 1.5E-09 66.6 12.8 136 130-269 12-148 (292)
51 KOG1442 GDP-fucose transporter 98.1 2.7E-05 5.8E-10 67.9 9.3 239 33-273 60-336 (347)
52 TIGR00776 RhaT RhaT L-rhamnose 98.0 5.9E-05 1.3E-09 68.1 10.6 127 130-265 6-137 (290)
53 PRK10452 multidrug efflux syst 97.9 3.5E-05 7.6E-10 59.9 6.5 69 198-266 36-105 (120)
54 COG2962 RarD Predicted permeas 97.9 0.00013 2.8E-09 64.4 10.5 136 126-264 6-144 (293)
55 TIGR00803 nst UDP-galactose tr 97.9 4.5E-05 9.8E-10 66.0 7.3 62 200-261 160-221 (222)
56 PF03151 TPT: Triose-phosphate 97.8 0.00042 9.1E-09 55.9 12.2 117 6-123 1-133 (153)
57 KOG4314 Predicted carbohydrate 97.8 0.00019 4.2E-09 59.8 8.9 184 82-269 64-281 (290)
58 PRK13499 rhamnose-proton sympo 97.7 0.025 5.5E-07 52.0 23.1 256 4-265 6-342 (345)
59 PF08449 UAA: UAA transporter 97.7 0.00046 1E-08 62.6 11.9 129 139-273 14-145 (303)
60 KOG3912 Predicted integral mem 97.7 0.0028 6E-08 55.8 15.0 244 18-264 16-334 (372)
61 PRK09541 emrE multidrug efflux 97.6 0.00018 3.8E-09 55.2 6.2 68 198-265 36-104 (110)
62 PF05653 Mg_trans_NIPA: Magnes 97.6 0.0013 2.8E-08 59.6 12.8 188 75-268 53-296 (300)
63 KOG4510 Permease of the drug/m 97.4 0.00015 3.3E-09 63.1 4.4 134 126-266 37-171 (346)
64 PF06800 Sugar_transport: Suga 97.4 0.0017 3.8E-08 57.4 10.8 82 190-272 44-130 (269)
65 PF06027 DUF914: Eukaryotic pr 97.4 0.0028 6.1E-08 58.1 11.7 78 190-268 78-155 (334)
66 KOG1583 UDP-N-acetylglucosamin 97.3 0.0054 1.2E-07 53.9 12.5 225 33-264 32-314 (330)
67 COG2076 EmrE Membrane transpor 97.3 0.00069 1.5E-08 51.1 5.9 67 199-265 37-104 (106)
68 PRK11431 multidrug efflux syst 97.3 0.00091 2E-08 50.8 6.2 66 199-264 36-102 (105)
69 PRK10650 multidrug efflux syst 97.2 0.0012 2.6E-08 50.5 5.9 65 199-263 42-107 (109)
70 PF05653 Mg_trans_NIPA: Magnes 97.1 0.00091 2E-08 60.6 5.8 117 124-264 4-122 (300)
71 PF04657 DUF606: Protein of un 97.1 0.0075 1.6E-07 48.2 10.3 128 130-261 6-138 (138)
72 KOG1582 UDP-galactose transpor 97.1 0.003 6.5E-08 55.3 8.2 140 126-266 189-334 (367)
73 PF00893 Multi_Drug_Res: Small 96.9 0.0017 3.8E-08 48.2 4.8 57 199-255 36-93 (93)
74 PRK13499 rhamnose-proton sympo 96.9 0.0049 1.1E-07 56.6 8.6 134 126-264 6-153 (345)
75 COG4975 GlcU Putative glucose 96.9 0.00032 6.9E-09 60.5 0.8 238 6-263 3-284 (288)
76 KOG2922 Uncharacterized conser 96.7 0.031 6.8E-07 50.2 12.0 229 3-264 19-306 (335)
77 PF04142 Nuc_sug_transp: Nucle 96.6 0.0035 7.5E-08 55.1 4.9 68 202-269 27-94 (244)
78 COG5006 rhtA Threonine/homoser 96.5 0.028 6E-07 49.0 10.0 120 5-129 148-270 (292)
79 PRK15051 4-amino-4-deoxy-L-ara 96.5 0.032 6.9E-07 42.8 9.5 53 77-129 42-97 (111)
80 COG3238 Uncharacterized protei 96.4 0.041 8.8E-07 44.3 9.7 133 130-265 10-147 (150)
81 PF10639 UPF0546: Uncharacteri 96.3 0.015 3.4E-07 44.5 6.2 64 199-262 48-112 (113)
82 PRK02971 4-amino-4-deoxy-L-ara 96.2 0.091 2E-06 41.5 10.7 109 5-134 2-116 (129)
83 COG4975 GlcU Putative glucose 95.3 0.0069 1.5E-07 52.4 1.1 128 130-267 7-139 (288)
84 KOG2922 Uncharacterized conser 94.9 0.0086 1.9E-07 53.8 0.5 125 123-271 17-143 (335)
85 KOG1441 Glucose-6-phosphate/ph 94.7 0.017 3.8E-07 52.4 1.8 123 142-267 34-158 (316)
86 KOG2765 Predicted membrane pro 94.0 0.042 9.1E-07 50.4 2.9 66 204-269 171-236 (416)
87 KOG4314 Predicted carbohydrate 93.1 0.059 1.3E-06 45.2 2.1 66 205-270 66-131 (290)
88 KOG2234 Predicted UDP-galactos 93.0 0.31 6.7E-06 44.6 6.6 60 204-263 104-163 (345)
89 KOG1580 UDP-galactose transpor 90.8 0.46 1E-05 41.1 4.9 131 135-271 23-164 (337)
90 PF10639 UPF0546: Uncharacteri 89.9 1.1 2.3E-05 34.5 5.8 97 11-129 2-102 (113)
91 PF07857 DUF1632: CEO family ( 86.8 4.1 8.9E-05 36.0 8.2 120 130-266 5-136 (254)
92 KOG1444 Nucleotide-sugar trans 86.7 10 0.00022 34.4 10.7 139 4-144 156-302 (314)
93 PRK02237 hypothetical protein; 85.2 2.8 6E-05 31.7 5.4 46 222-267 63-108 (109)
94 PF00893 Multi_Drug_Res: Small 84.6 6.6 0.00014 28.8 7.3 42 82-123 40-82 (93)
95 PF04657 DUF606: Protein of un 84.5 18 0.00039 28.7 10.2 106 8-117 4-111 (138)
96 KOG4831 Unnamed protein [Funct 83.0 3.1 6.6E-05 31.4 4.8 60 204-263 64-124 (125)
97 PF06379 RhaT: L-rhamnose-prot 82.6 6.9 0.00015 35.9 7.9 136 127-265 7-154 (344)
98 PF02694 UPF0060: Uncharacteri 81.7 2 4.3E-05 32.4 3.4 46 222-267 61-106 (107)
99 KOG1581 UDP-galactose transpor 80.7 40 0.00088 30.5 11.8 135 5-141 172-314 (327)
100 KOG1443 Predicted integral mem 80.4 6.5 0.00014 35.5 6.7 122 144-266 35-158 (349)
101 PF04342 DUF486: Protein of un 80.1 1.6 3.4E-05 32.9 2.4 31 233-263 77-107 (108)
102 KOG1442 GDP-fucose transporter 79.3 3.5 7.7E-05 36.7 4.7 113 150-263 57-173 (347)
103 COG3169 Uncharacterized protei 79.1 3.8 8.2E-05 30.4 4.1 32 233-264 84-115 (116)
104 PF05977 MFS_3: Transmembrane 78.8 69 0.0015 31.5 19.5 70 193-262 313-390 (524)
105 COG5070 VRG4 Nucleotide-sugar 71.8 68 0.0015 27.9 10.5 135 7-143 157-297 (309)
106 KOG3912 Predicted integral mem 70.0 4.8 0.0001 36.0 3.2 63 203-265 97-159 (372)
107 PF07168 Ureide_permease: Urei 65.5 7.5 0.00016 35.1 3.5 131 130-263 1-145 (336)
108 COG0798 ACR3 Arsenite efflux p 64.8 1.2E+02 0.0025 28.0 11.1 137 106-244 93-239 (342)
109 PF03547 Mem_trans: Membrane t 63.6 1.1E+02 0.0024 28.3 11.3 9 257-265 140-148 (385)
110 COG2076 EmrE Membrane transpor 63.3 61 0.0013 24.6 7.6 48 82-129 41-91 (106)
111 COG3086 RseC Positive regulato 63.0 6.4 0.00014 31.4 2.3 23 217-239 73-95 (150)
112 PRK09541 emrE multidrug efflux 61.5 70 0.0015 24.3 8.7 53 77-129 35-91 (110)
113 TIGR02840 spore_YtaF putative 61.0 6.7 0.00015 33.5 2.4 45 219-263 34-80 (206)
114 PF04246 RseC_MucC: Positive r 61.0 3.5 7.6E-05 32.5 0.6 45 219-263 68-114 (135)
115 TIGR00803 nst UDP-galactose tr 58.3 63 0.0014 27.4 8.1 45 78-122 159-203 (222)
116 PF15099 PIRT: Phosphoinositid 58.2 5 0.00011 31.1 1.0 16 193-208 58-73 (129)
117 PF15102 TMEM154: TMEM154 prot 57.7 7.8 0.00017 31.0 2.0 40 252-291 69-113 (146)
118 COG3238 Uncharacterized protei 56.1 1.1E+02 0.0023 24.8 9.2 108 8-117 8-116 (150)
119 PRK10452 multidrug efflux syst 55.9 94 0.002 24.1 8.4 52 78-129 36-91 (120)
120 PF11044 TMEMspv1-c74-12: Plec 54.1 8.7 0.00019 24.0 1.4 7 257-263 21-27 (49)
121 PRK09584 tppB putative tripept 49.0 2.4E+02 0.0053 27.2 11.4 19 209-227 404-422 (500)
122 PRK13108 prolipoprotein diacyl 48.1 46 0.001 32.1 5.9 28 244-271 254-281 (460)
123 COG1742 Uncharacterized conser 47.8 38 0.00081 25.5 4.1 45 223-267 63-107 (109)
124 PRK10650 multidrug efflux syst 46.7 1.3E+02 0.0028 22.9 9.7 44 82-125 46-90 (109)
125 KOG3817 Uncharacterized conser 46.7 1.3E+02 0.0029 27.9 8.3 87 16-106 200-286 (452)
126 PRK10489 enterobactin exporter 44.9 2.6E+02 0.0055 25.9 11.7 16 248-263 382-397 (417)
127 PF11027 DUF2615: Protein of u 40.5 54 0.0012 24.7 4.1 25 248-272 56-80 (103)
128 TIGR00905 2A0302 transporter, 40.3 1.6E+02 0.0034 28.3 8.4 44 223-266 393-436 (473)
129 COG4858 Uncharacterized membra 39.7 1.7E+02 0.0036 24.7 7.1 83 189-272 125-216 (226)
130 PF04306 DUF456: Protein of un 39.6 1.2E+02 0.0025 24.2 6.2 70 189-268 31-101 (140)
131 TIGR00910 2A0307_GadC glutamat 39.4 3.7E+02 0.008 26.2 11.8 15 154-168 331-345 (507)
132 PRK14789 lipoprotein signal pe 39.4 66 0.0014 27.1 5.0 12 249-260 136-147 (191)
133 PF15048 OSTbeta: Organic solu 39.4 24 0.00052 27.4 2.1 26 238-263 26-55 (125)
134 PRK11469 hypothetical protein; 38.3 16 0.00034 30.7 1.1 42 222-263 44-86 (188)
135 PRK10862 SoxR reducing system 38.1 16 0.00034 29.7 1.0 20 220-239 76-95 (154)
136 PRK09399 sspP acid-soluble spo 37.5 24 0.00051 22.2 1.5 24 277-300 13-36 (48)
137 PRK09556 uhpT sugar phosphate 37.1 3.7E+02 0.008 25.4 11.4 13 33-45 121-133 (467)
138 PRK11056 hypothetical protein; 36.4 2E+02 0.0044 22.2 9.4 48 65-122 6-54 (120)
139 KOG1583 UDP-N-acetylglucosamin 35.1 35 0.00076 30.6 2.7 49 221-269 94-142 (330)
140 TIGR03810 arg_ornith_anti argi 33.2 3.8E+02 0.0082 25.6 9.9 39 226-264 391-429 (468)
141 PRK15049 L-asparagine permease 32.3 2.9E+02 0.0064 26.8 9.0 12 275-286 477-488 (499)
142 PRK12437 prolipoprotein diacyl 32.0 1E+02 0.0022 27.4 5.3 44 221-264 207-255 (269)
143 PF15330 SIT: SHP2-interacting 31.5 50 0.0011 25.1 2.7 24 249-272 6-30 (107)
144 PRK10862 SoxR reducing system 30.3 1.2E+02 0.0026 24.5 5.0 57 91-150 68-127 (154)
145 PRK02463 OxaA-like protein pre 29.7 98 0.0021 28.2 4.8 39 224-263 210-248 (307)
146 PF08374 Protocadherin: Protoc 29.4 40 0.00087 28.9 2.1 13 251-263 49-61 (221)
147 PRK11431 multidrug efflux syst 29.3 2.5E+02 0.0054 21.1 8.8 44 82-125 40-84 (105)
148 PF11457 DUF3021: Protein of u 29.1 2.7E+02 0.0059 21.5 8.3 60 205-264 58-118 (136)
149 COG4665 FcbT2 TRAP-type mannit 28.7 3.4E+02 0.0073 22.5 10.2 56 5-62 20-75 (182)
150 PF08179 SspP: Small acid-solu 27.9 40 0.00088 21.0 1.3 21 280-300 16-36 (45)
151 PF06157 DUF973: Protein of un 27.6 2.3E+02 0.005 25.5 6.7 38 193-230 116-159 (285)
152 PF07698 7TM-7TMR_HD: 7TM rece 27.1 3.6E+02 0.0077 22.2 16.6 24 99-122 59-83 (194)
153 PF13038 DUF3899: Domain of un 26.8 47 0.001 24.1 1.8 17 246-262 4-20 (92)
154 PF06946 Phage_holin_5: Phage 26.7 2.7E+02 0.0058 20.6 6.3 65 210-274 22-90 (93)
155 TIGR00544 lgt prolipoprotein d 26.0 1.6E+02 0.0035 26.3 5.5 21 244-264 246-266 (278)
156 PF11381 DUF3185: Protein of u 25.7 21 0.00047 23.9 -0.1 23 249-271 2-24 (59)
157 COG3086 RseC Positive regulato 25.5 2.2E+02 0.0047 22.9 5.4 28 91-118 68-95 (150)
158 TIGR01167 LPXTG_anchor LPXTG-m 25.1 57 0.0012 18.6 1.6 17 245-261 11-27 (34)
159 PF08566 Pam17: Mitochondrial 24.5 2.5E+02 0.0055 23.2 5.8 18 277-294 127-145 (173)
160 PF04277 OAD_gamma: Oxaloaceta 24.2 84 0.0018 21.9 2.7 9 249-257 9-17 (79)
161 TIGR00882 2A0105 oligosacchari 23.7 5.6E+02 0.012 23.3 11.5 21 95-115 35-55 (396)
162 KOG4491 Predicted membrane pro 22.9 3.1E+02 0.0067 24.0 6.2 43 1-48 1-48 (323)
163 PF15144 DUF4576: Domain of un 22.0 98 0.0021 22.0 2.5 12 255-266 10-21 (88)
164 PRK10644 arginine:agmatin anti 21.9 6.8E+02 0.015 23.6 10.1 41 223-263 385-425 (445)
165 PRK11357 frlA putative fructos 21.9 6.7E+02 0.015 23.6 9.8 43 225-268 390-437 (445)
166 PF04246 RseC_MucC: Positive r 21.5 1.7E+02 0.0038 22.7 4.4 57 93-150 63-120 (135)
167 PF05297 Herpes_LMP1: Herpesvi 21.1 32 0.00069 30.8 0.0 28 95-122 47-75 (381)
168 PF07168 Ureide_permease: Urei 20.8 79 0.0017 28.8 2.4 94 10-105 1-106 (336)
169 PRK10054 putative transporter; 20.6 6.7E+02 0.014 23.0 12.8 12 96-107 41-52 (395)
170 PF06570 DUF1129: Protein of u 20.6 5.1E+02 0.011 21.7 10.9 18 10-27 90-107 (206)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=5.2e-37 Score=282.61 Aligned_cols=267 Identities=39% Similarity=0.708 Sum_probs=225.3
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 022226 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (300)
Q Consensus 2 ~~~~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g 81 (300)
+..|++.+|+.+.++.+...++.|.+++.|++|..+.++|+.+|+++ ++++.+.++|+++.++.+++++..+.+.|+++
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~-Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLL-LLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHH-HHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999 99887765543332455688888999999998
Q ss_pred HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHH------hccC----------------------cc---------
Q 022226 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALIS------RGID----------------------CD--------- 124 (300)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~------l~e~----------------------~~--------- 124 (300)
+.++.+++.|++|+++++++++.++.|+++.++++++ ++|| ++
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~ 168 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP 168 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence 6677789999999999999999999999999999999 5888 11
Q ss_pred ------------------ccchh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCcc
Q 022226 125 ------------------FVQGA--STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSW 183 (300)
Q Consensus 125 ------------------~~~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~ 183 (300)
+.+|+ .+.++++|+.|.+.+|+..+++++....+++++.++++...+.+...+++ ...|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (358)
T PLN00411 169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVW 248 (358)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccc
Confidence 12376 88999999999999999988887756778888888888777777766542 2233
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 184 RLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 184 ~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
..........++|.+++ +.++|.+|++++++.||++++++.+++|+++.++|++++||++++.+++|+++|+.|++++.
T Consensus 249 ~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 249 IIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred eeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 32222335568888875 67899999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhhh
Q 022226 264 WGQSEEE 270 (300)
Q Consensus 264 ~~~~~~~ 270 (300)
++++|+.
T Consensus 328 ~~~~~~~ 334 (358)
T PLN00411 328 WGKANEE 334 (358)
T ss_pred hhhhhhh
Confidence 7555443
No 2
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=4.7e-31 Score=238.21 Aligned_cols=255 Identities=11% Similarity=0.022 Sum_probs=207.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 022226 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISC 82 (300)
Q Consensus 3 ~~~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~ 82 (300)
+.+++.++++++++|+.+++++|.+.++ +||.+++++|+.+++++ ++++. ++++ .+.+++++......|.+..
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~-l~~~~--~~~~---~~~~~~~~~~~~~~g~~~~ 82 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLI-LIAIF--KPWR---LRFAKEQRLPLLFYGVSLG 82 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHH-HHHHH--hHHh---ccCCHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999987 99999999999999998 77654 2222 1234566677778888776
Q ss_pred HHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC------------------------ccccchh--hhHHHHH
Q 022226 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID------------------------CDFVQGA--STSGSFF 136 (300)
Q Consensus 83 ~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~------------------------~~~~~G~--~l~a~~~ 136 (300)
..+.++++|++|++++.++++.++.|+++.+++. +|+ .....|+ .++++++
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~---~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~ 159 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS---RRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGAC 159 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHH
Confidence 7778899999999999999999999999998873 222 1123577 9999999
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022226 137 LSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKK 216 (300)
Q Consensus 137 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~ 216 (300)
|+.|.+..||..++++. ... .+...++++...+.....+++ ..+ +...|..++++++++++++|.+|+++++|.
T Consensus 160 ~a~~~v~~r~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~ 233 (293)
T PRK10532 160 WAIYILSGQRAGAEHGP-ATV-AIGSLIAALIFVPIGALQAGE-ALW---HWSILPLGLAVAILSTALPYSLEMIALTRL 233 (293)
T ss_pred HHHHHHHHHHHhccCCc-hHH-HHHHHHHHHHHHHHHHHccCc-ccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998877664 554 456677777777766543321 111 223466778999999999999999999999
Q ss_pred CCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhhhhcc
Q 022226 217 GPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMI 273 (300)
Q Consensus 217 ~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~~~~~ 273 (300)
+++++|++.++||+++.++|++++||+++..+++|+++|+.|+....++++|+.|.|
T Consensus 234 ~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~ 290 (293)
T PRK10532 234 PTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIK 290 (293)
T ss_pred ChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999999999999999999998877665544433
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.98 E-value=1.8e-30 Score=234.22 Aligned_cols=250 Identities=16% Similarity=0.146 Sum_probs=208.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 022226 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQ 85 (300)
Q Consensus 7 ~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~~ 85 (300)
.+.++...++||.+++.+|.+.++ +||.+++++|+.+++++ ++++...+++ + ..+++++......|.++ ..++
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~-ll~~~~~~~~--~--~~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGIL-LLAFLLLRGH--P--LPTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHHHHhCC--C--CCcHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999886 99999999999999998 8887644322 2 22456777788889887 7788
Q ss_pred HHHHHhc-cccChhhHhhhhhhhHHHHHHHHHHHhccC---------------------c----cccchh--hhHHHHHH
Q 022226 86 TCLYVGI-GYSSPTLSSAIVDLTPAFTFILALISRGID---------------------C----DFVQGA--STSGSFFL 137 (300)
Q Consensus 86 ~~~~~al-~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~---------------------~----~~~~G~--~l~a~~~~ 137 (300)
.+++++. +++++++++++.++.|+++.+++.+ +||| + ....|+ .++++++|
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~ 162 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASW 162 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHH
Confidence 8999998 9999999999999999999999986 6998 1 113577 99999999
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 022226 138 SLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKG 217 (300)
Q Consensus 138 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~ 217 (300)
+.|.+..||..++. + ...+.+++.++++.+.+.....+.+.. ..++...|..++++++++++++|.+|++++++.+
T Consensus 163 a~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~ 238 (292)
T PRK11272 163 AFGSVWSSRLPLPV-G-MMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVR 238 (292)
T ss_pred HHHHHHHHhcCCCc-c-hHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999998876443 3 556778888888887777665433211 1123457889999999999999999999999999
Q ss_pred CceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccch
Q 022226 218 PVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 267 (300)
Q Consensus 218 ~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~ 267 (300)
+++++.+.+++|+++++++++++||+++..+++|+++++.|+++.+++++
T Consensus 239 ~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 239 PALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998876443
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.98 E-value=4.7e-30 Score=232.35 Aligned_cols=249 Identities=16% Similarity=0.149 Sum_probs=196.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 022226 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQ 85 (300)
Q Consensus 7 ~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~~ 85 (300)
.+..++++++||.+++++|.+.++ +||..++++|+.++++. ++++. . ++ +.++ ......|++. ...+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~-l~~~~--~-~~----~~~~---~~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFP-AIFFV--A-RP----KVPL---NLLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH-HHHHh--c-CC----CCch---HHHHHHHHHHHHHHH
Confidence 466889999999999999999986 99999999999998877 66543 1 21 2223 2344456655 5566
Q ss_pred HHHHHhccc-cChhhHhhhhhhhHHHHHHHHHHHhccC---------------------c--c----ccchh--hhHHHH
Q 022226 86 TCLYVGIGY-SSPTLSSAIVDLTPAFTFILALISRGID---------------------C--D----FVQGA--STSGSF 135 (300)
Q Consensus 86 ~~~~~al~~-~~~~~a~~i~~l~Pi~~~ila~~~l~e~---------------------~--~----~~~G~--~l~a~~ 135 (300)
.+++.+++| .++++++++.++.|+++.+++++++||| + + ...|+ ++.+++
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal 153 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAF 153 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHH
Confidence 677889988 5889999999999999999999999999 1 1 12588 999999
Q ss_pred HHHHHHHHHHHHHhhcCch--hHHHHHHHHHHHHHHHHHHHHhcCCC---CcccccCchhHHHHHHHHHHHHHHHHHHHH
Q 022226 136 FLSLLYIVQTSIIREYPEE--LMATFICCVFVTIQSTVVALIAERNP---NSWRLKPDTELIAIGCSAFFAVALRSLAHT 210 (300)
Q Consensus 136 ~~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~ 210 (300)
+|+.|.+..||..++.+++ .....+.+..+.+...+.+...+++. ..+...+...|..++|+++++++++|.+|+
T Consensus 154 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~ 233 (299)
T PRK11453 154 SWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWG 233 (299)
T ss_pred HHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986655432 23445666666555554444444321 112223446799999999999999999999
Q ss_pred HHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccch
Q 022226 211 WACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 267 (300)
Q Consensus 211 ~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~ 267 (300)
+++++.++.+++.+.+++|+++.++|++++||+++..+++|+++++.|+++..+.++
T Consensus 234 ~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 234 TLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999999998876554
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=2.8e-29 Score=226.88 Aligned_cols=247 Identities=13% Similarity=0.095 Sum_probs=191.6
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 022226 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (300)
Q Consensus 2 ~~~~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g 81 (300)
+|.|+++.++.++++||.+++.+|.+.++ +||..+.++|+.+|+++ ++++. .+++ . ++.+ ++....|.++
T Consensus 1 ~~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~-l~~~~--~~~~-~-~~~~----~~~~~~~~l~ 70 (295)
T PRK11689 1 TSQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLL-LLLTV--GFPR-L-RQFP----KRYLLAGGLL 70 (295)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHH-HHHHc--cccc-c-cccc----HHHHHHHhHH
Confidence 46788999999999999999999999987 99999999999999998 77652 1111 1 1112 2233445555
Q ss_pred -HHHHHHHHHhcc----ccChhhHhhhhhhhHHHHHHHHHHHhccC---------------------cc-----------
Q 022226 82 -CCVQTCLYVGIG----YSSPTLSSAIVDLTPAFTFILALISRGID---------------------CD----------- 124 (300)
Q Consensus 82 -~~~~~~~~~al~----~~~~~~a~~i~~l~Pi~~~ila~~~l~e~---------------------~~----------- 124 (300)
..++.+++.|++ ++++++++++.++.|+++.+++++++||| ++
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~ 150 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINN 150 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhc
Confidence 677777777765 46788999999999999999999999999 11
Q ss_pred ---ccchh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHH
Q 022226 125 ---FVQGA--STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAF 199 (300)
Q Consensus 125 ---~~~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i 199 (300)
...|+ +++|+++|+.|.+..||..+++++ ..... ..+++.+.+.....+.+..+ .+...|..+++.+
T Consensus 151 ~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~- 222 (295)
T PRK11689 151 IASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG-ITLFF---ILTALALWIKYFLSPQPAMV---FSLPAIIKLLLAA- 222 (295)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc-hhHHH---HHHHHHHHHHHHHhcCcccc---CCHHHHHHHHHHH-
Confidence 12377 999999999999999998777654 44322 23333333333332211111 2335687888888
Q ss_pred HHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccc
Q 022226 200 FAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 200 ~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~ 266 (300)
++++++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++|+.|+++...++
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 4799999999999999999999999999999999999999999999999999999999998887544
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.97 E-value=1.1e-28 Score=223.18 Aligned_cols=260 Identities=11% Similarity=0.055 Sum_probs=189.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-C-CCCHHHHHHHHHHHH
Q 022226 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR-P-PLTVSIICKIFGLGL 79 (300)
Q Consensus 2 ~~~~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~-~-~~~~~~~~~~~~~gl 79 (300)
++.|+++++++++++||.+++.+|.. ++ ++|.++.++|++++.++ ++++...+++.+.. . ..+++.+. ....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFF-MVVLMSICRQWSYLKTLIQTPQKIF-MLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHHHHcCHHHHH-HHHHHH
Confidence 35689999999999999999999986 54 99999999999999988 77765443211000 0 11333332 334666
Q ss_pred HH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCcc---c---------------cch---h-hhHHHHH
Q 022226 80 IS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDCD---F---------------VQG---A-STSGSFF 136 (300)
Q Consensus 80 ~g-~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~---~---------------~~G---~-~l~a~~~ 136 (300)
++ ..++.++++|++++++++++++.++.|+++.+++++++|||.+ + ..| . .++++++
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~l~aa~~ 160 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFS 160 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 66 8899999999999999999999999999999999999999911 0 011 1 7789999
Q ss_pred HHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022226 137 LSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHK 215 (300)
Q Consensus 137 ~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~ 215 (300)
|+.|.+..|+..++.. +....+.+.+.++.+...+.. +.....+...+...+..+.+.++ .+.++|.+|++++++
T Consensus 161 ~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~ 236 (296)
T PRK15430 161 FAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATR 236 (296)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 9999998888653321 113334455555544322211 11111111111112333334454 788999999999999
Q ss_pred cCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhh
Q 022226 216 KGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 269 (300)
Q Consensus 216 ~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~ 269 (300)
.|++++|++.+++|+++.++|++++||++++.+++|+++|+.|+.+........
T Consensus 237 ~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~ 290 (296)
T PRK15430 237 LRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYT 290 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888776544333
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.96 E-value=9.9e-28 Score=212.44 Aligned_cols=230 Identities=14% Similarity=0.141 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhcccc
Q 022226 17 EVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYS 95 (300)
Q Consensus 17 w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~~~~~~~al~~~ 95 (300)
||.+++..|.+++++.|+....+.|+..+.+. +.+.... + + +++++.+....|.++ .+++.+++.|++|+
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~-l~~~~~~--~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLL-LLPLLRR--R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHh--c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999887689999999999998887 7765422 2 1 234457788888888 89999999999999
Q ss_pred ChhhHhhhhhhhHHHHHHHHHHHhccC-------------------------ccccchh--hhHHHHHHHHHHHHHHHHH
Q 022226 96 SPTLSSAIVDLTPAFTFILALISRGID-------------------------CDFVQGA--STSGSFFLSLLYIVQTSII 148 (300)
Q Consensus 96 ~~~~a~~i~~l~Pi~~~ila~~~l~e~-------------------------~~~~~G~--~l~a~~~~a~~~v~~~~~~ 148 (300)
++++++++.++.|+++.+++.+++||| +....|+ +++++++|+.+.+..|+..
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~ 151 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLV 151 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999 1223577 8999999999999999988
Q ss_pred hhcCc-hhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhh
Q 022226 149 REYPE-ELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPL 227 (300)
Q Consensus 149 ~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l 227 (300)
++.+. ......+.+.++.+...+.....+++. .. +...|..+++.++++++++|.+|++++++.++++++.+.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~ 227 (260)
T TIGR00950 152 KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALA 227 (260)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 77653 134555778888888888777544322 11 34568889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhHHHHhhhh
Q 022226 228 GIVFAIIMGVTLLGDTLYLGSVVGATIVAFGF 259 (300)
Q Consensus 228 ~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv 259 (300)
+|+++.+++++++||+++..+++|+++++.|+
T Consensus 228 ~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 228 EPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999986
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.94 E-value=1.3e-25 Score=203.48 Aligned_cols=242 Identities=12% Similarity=0.092 Sum_probs=188.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhH
Q 022226 21 STLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLS 100 (300)
Q Consensus 21 ~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~al~~~~~~~a 100 (300)
.+..|.++++-.+|..++++|+.++.+. +.+......++ + ++.+++++..+...|+++..++.+.+.|++|++++++
T Consensus 18 ~~~NK~~l~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~ 94 (302)
T TIGR00817 18 NIYNKKLLNVFPYPYFKTLISLAVGSLY-CLLSWSSGLPK-R-LKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFT 94 (302)
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHH-HHHHHHhCCCC-C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3578999886467999999999998877 65542111122 2 4567888899999999997888999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhccC------------------------ccccchh--hhHHHHHHHHHHHHHHHHHh--hcC
Q 022226 101 SAIVDLTPAFTFILALISRGID------------------------CDFVQGA--STSGSFFLSLLYIVQTSIIR--EYP 152 (300)
Q Consensus 101 ~~i~~l~Pi~~~ila~~~l~e~------------------------~~~~~G~--~l~a~~~~a~~~v~~~~~~~--~~~ 152 (300)
+++.++.|+++.+++++++||| +....|+ +++|+++|++|.+..||..+ +++
T Consensus 95 ~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~ 174 (302)
T TIGR00817 95 HTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLD 174 (302)
T ss_pred HHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 9999999999999999999999 1123588 99999999999999999877 666
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCCC---cccc----cC-chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecc
Q 022226 153 EELMATFICCVFVTIQSTVVALIAERNPN---SWRL----KP-DTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMY 224 (300)
Q Consensus 153 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~----~~-~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~ 224 (300)
+ ...+.+++..+++.+.|.....|+... ++.. .. ...+...+..+..+....+.+++.++++.+|.+.+.+
T Consensus 175 ~-~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~ 253 (302)
T TIGR00817 175 K-TNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVG 253 (302)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence 5 889999999999999998876654210 1100 00 0112112222222222223455689999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccc
Q 022226 225 KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 225 ~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~ 266 (300)
.+++|++++++|++++||+++..+++|+++++.|++++++.|
T Consensus 254 ~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 254 NCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred hhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988644
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.93 E-value=6.7e-24 Score=190.48 Aligned_cols=246 Identities=14% Similarity=0.166 Sum_probs=180.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 022226 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYY-RNRTRPPLTVSIICKIFGLGLIS-CCV 84 (300)
Q Consensus 7 ~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~gl~g-~~~ 84 (300)
..+.+.++++|+...+.+|...++ -++. .++++..+++. +.|+...+. ++.+ +..+++. ......+.++ ..+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~-l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 76 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVL-LTPYGLWYLAQVGW-SRLPATF-WLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHH-HHHHHHHhcccCCC-CCcchhh-HHHHHHHHHHHHHH
Confidence 467789999999999999976554 3443 47788777777 777765432 2222 2223333 4344444444 889
Q ss_pred HHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC---------------------c----cccchh--hhHHHHHH
Q 022226 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID---------------------C----DFVQGA--STSGSFFL 137 (300)
Q Consensus 85 ~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~---------------------~----~~~~G~--~l~a~~~~ 137 (300)
+.+++.|+++.++++++.+.++.|+++.+++++++||| + ....|+ +++++++|
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~ 156 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGT 156 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 1 112355 88999999
Q ss_pred HHHHHHHHHHHhhcCch---hHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 022226 138 SLLYIVQTSIIREYPEE---LMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACH 214 (300)
Q Consensus 138 a~~~v~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~ 214 (300)
+.|.+..|+..++.++. ...+.+.+..+++...+.....++.. +. .+...+..+++.+.+.+.++|.+|+++++
T Consensus 157 a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~ 233 (281)
T TIGR03340 157 AIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQILPSATLGGLMIGGAYALVLWAMT 233 (281)
T ss_pred HHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888765444321 12233333333222222222112111 11 12234667788889999999999999999
Q ss_pred hcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhh
Q 022226 215 KKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYS 261 (300)
Q Consensus 215 ~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l 261 (300)
+.|+++++.+.+++|+++.++|++++||+++..+++|+++++.|+++
T Consensus 234 ~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 234 RLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred hCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999875
No 10
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.92 E-value=2.3e-23 Score=184.42 Aligned_cols=228 Identities=10% Similarity=-0.011 Sum_probs=164.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCHHH-HHHHHHHH
Q 022226 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVSI-ICKIFGLG 78 (300)
Q Consensus 4 ~~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~----~~~~~~~~~-~~~~~~~g 78 (300)
.|+++.+++++++||.+++++|. .++ +||.+++++|+++++++ ++++...+++++ +.++.++++ +..+...|
T Consensus 1 ~~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 1 FKGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPF-MLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 37899999999999999999998 455 99999999999999987 777654332211 101112222 34466677
Q ss_pred HHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCccc------------------cch---h-hhHHHHH
Q 022226 79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDCDF------------------VQG---A-STSGSFF 136 (300)
Q Consensus 79 l~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~~------------------~~G---~-~l~a~~~ 136 (300)
.+...++.++++|++++++++++++.+++|+++++++++++|||.+. ..| . ++.++++
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~~~~l~aa~~ 157 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLPWEALVLAFS 157 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 77788999999999999999999999999999999999999999110 012 2 6889999
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022226 137 LSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKK 216 (300)
Q Consensus 137 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~ 216 (300)
|+.|.+..|+..++ +. ....... +...+...+... .+++.......+...|..+++.|++ +.++|.+|++++++.
T Consensus 158 ~a~~~i~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~ 232 (256)
T TIGR00688 158 FTAYGLIRKALKNT-DL-AGFCLET-LSLMPVAIYYLL-QTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRL 232 (256)
T ss_pred HHHHHHHHhhcCCC-Cc-chHHHHH-HHHHHHHHHHHH-HhccCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcC
Confidence 99999998887543 22 2222111 111112111111 1111110111122368888888876 889999999999999
Q ss_pred CCceeecchhhHHHHHHHHHHHH
Q 022226 217 GPVYVSMYKPLGIVFAIIMGVTL 239 (300)
Q Consensus 217 ~~~~~s~~~~l~Pi~a~i~~~~~ 239 (300)
|+++++++.|++|+++.+++.+.
T Consensus 233 ~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 233 PLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999764
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.91 E-value=1.1e-22 Score=187.80 Aligned_cols=244 Identities=14% Similarity=0.092 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022226 17 EVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPL--TVSIICKIFGLGLISCCVQTCLYVGIG 93 (300)
Q Consensus 17 w~~~~~~~K~~~~~~~~-p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~--~~~~~~~~~~~gl~g~~~~~~~~~al~ 93 (300)
-.......|.++++ .| |..++.+|++++.++ ...+.....++ + ++. .++.+..++..|+++...+...+.|++
T Consensus 61 s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~-~~~~~~~~~~~-~-~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~ 136 (350)
T PTZ00343 61 NVLYVVDNKLALNM-LPLPWTISSLQLFVGWLF-ALLYWATGFRK-I-PRIKSLKLFLKNFLPQGLCHLFVHFGAVISMG 136 (350)
T ss_pred HHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHH-HHHHHHhCCCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456778999987 99 999999999999876 55544322222 1 333 234667888899999444555679999
Q ss_pred ccChhhHhhhhhhhHHHHHHHHHHHhccC------------------------ccccchh--hhHHHHHHHHHHHHHHHH
Q 022226 94 YSSPTLSSAIVDLTPAFTFILALISRGID------------------------CDFVQGA--STSGSFFLSLLYIVQTSI 147 (300)
Q Consensus 94 ~~~~~~a~~i~~l~Pi~~~ila~~~l~e~------------------------~~~~~G~--~l~a~~~~a~~~v~~~~~ 147 (300)
+++++.++++.++.|+++++++++++||| +....|+ +++|+++++.+.+..|+.
T Consensus 137 ~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~ 216 (350)
T PTZ00343 137 LGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKT 216 (350)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 1123588 999999999999999998
Q ss_pred HhhcC------chhHHHHHHHHHHHHHHHHHHHHhcCCC--Cccc----ccCchhHHHHHHHHHHHHHHHHHHHHH----
Q 022226 148 IREYP------EELMATFICCVFVTIQSTVVALIAERNP--NSWR----LKPDTELIAIGCSAFFAVALRSLAHTW---- 211 (300)
Q Consensus 148 ~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~i~~t~~~~~l~~~---- 211 (300)
.++.+ ++.....++.+.+++.++|+....|... ..+. ......+..+++ .++.+++.|++|+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~ 295 (350)
T PTZ00343 217 MKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFY 295 (350)
T ss_pred hcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 76542 1244666678899999998887665421 1110 001112334445 35678999999995
Q ss_pred HhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhcc
Q 022226 212 ACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 212 a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~ 265 (300)
++++.++...+...+++|++++++|++++||++++.+++|+++++.|++++++-
T Consensus 296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998754
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=169.06 Aligned_cols=251 Identities=19% Similarity=0.195 Sum_probs=191.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 022226 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C 82 (300)
Q Consensus 4 ~~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~ 82 (300)
.......++..+.|+.+....|...++..++....+.|+.++.+. +.+.....+...+ +.+. .+.+..+.+.++ .
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~ 81 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALL-LLPLLLLEPRGLR--PALR-PWLLLLLLALLGLA 81 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH-HHHHHHhhccccc--cccc-chHHHHHHHHHHHH
Confidence 345677788889999999999999875467777777799998876 5544322111111 1111 135566666666 8
Q ss_pred HHHHHHHHhccccChhhHhhhhhhhHHHHHHHHH-HHhccC---------------------cc------ccchh--hhH
Q 022226 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL-ISRGID---------------------CD------FVQGA--STS 132 (300)
Q Consensus 83 ~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~-~~l~e~---------------------~~------~~~G~--~l~ 132 (300)
.++.+++.++++++++.++.+.++.|+++.++++ ++++|| ++ ...|+ .+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~ 161 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALA 161 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999997 666999 11 13677 999
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhHHHH-HHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 022226 133 GSFFLSLLYIVQTSIIREYPEELMATF-ICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTW 211 (300)
Q Consensus 133 a~~~~a~~~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~ 211 (300)
++++++.+.+..|+.. +.+. ..... +... ............... .......|..+.+.+++++++++.+|++
T Consensus 162 a~~~~a~~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (292)
T COG0697 162 AALLWALYTALVKRLS-RLGP-VTLALLLQLL--LALLLLLLFFLSGFG---APILSRAWLLLLYLGVFSTGLAYLLWYY 234 (292)
T ss_pred HHHHHHHHHHHHHHhc-CCCh-HHHHHHHHHH--HHHHHHHHHHhcccc---ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 5443 45554 4443 222222222111111 1123356888999999999999999999
Q ss_pred HhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhcc
Q 022226 212 ACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 212 a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~ 265 (300)
++++.+++.++++.+++|+++.+++++++||+++..+++|+.+++.|+.+...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 235 ALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999988865
No 13
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.88 E-value=4.6e-21 Score=162.57 Aligned_cols=248 Identities=13% Similarity=0.017 Sum_probs=204.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022226 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (300)
Q Consensus 6 ~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~ 85 (300)
++.+++.+++.-=....+.|..... +.|...+.+|..+++++ ++++. +.. + .+.+++++..+...|......|
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLI-ll~l~--RPw--r-~r~~~~~~~~~~~yGvsLg~MN 85 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALI-LLALF--RPW--R-RRLSKPQRLALLAYGVSLGGMN 85 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHH-HHHHh--hHH--H-hccChhhhHHHHHHHHHHHHHH
Confidence 5777877777777778889999888 99999999999999998 77764 222 1 3567777799999999888999
Q ss_pred HHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC---------------------ccccchh--hhHHHHHHHHHHH
Q 022226 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID---------------------CDFVQGA--STSGSFFLSLLYI 142 (300)
Q Consensus 86 ~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~---------------------~~~~~G~--~l~a~~~~a~~~v 142 (300)
.+||.++++++.+.+..+.++-|+.+.+++..-.++- +....|. ++.++.||+.|++
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~sRr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv 165 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLSSRRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIV 165 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHhccchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999888765433332 2224777 9999999999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceee
Q 022226 143 VQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVS 222 (300)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s 222 (300)
..+|..+..+. -+.+...+.+++++.+|++....+. . ..++.-...-+.++++++.+.|.+-+.+++|.+....+
T Consensus 166 ~G~r~g~~~~g-~~g~a~gm~vAaviv~Pig~~~ag~--~--l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~ 240 (292)
T COG5006 166 LGQRAGRAEHG-TAGVAVGMLVAALIVLPIGAAQAGP--A--LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFG 240 (292)
T ss_pred HcchhcccCCC-chHHHHHHHHHHHHHhhhhhhhcch--h--hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHH
Confidence 99998866666 7888899999999999988743221 1 11233466777889999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhcc
Q 022226 223 MYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 223 ~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~ 265 (300)
..+.+||.++.+.|++++||.+|..|+.|.++|+.+..=.+..
T Consensus 241 ~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 241 TLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999776644443
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.86 E-value=4.4e-19 Score=160.95 Aligned_cols=256 Identities=15% Similarity=0.172 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022226 12 AVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYV 90 (300)
Q Consensus 12 ~~~~~w~~~~~~~K~~~~~~~~-p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~ 90 (300)
..+++-..+.+.+....+.|.+ |..-.++-+..-.++ ..+....++++++..+.-++.+++.++.+++....+++...
T Consensus 20 ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~v-y~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~ 98 (334)
T PF06027_consen 20 VLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALV-YTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVL 98 (334)
T ss_pred HHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHH-HhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777666555554 555556666555555 55655444332111222235567788888888889999999
Q ss_pred hccccChhhHhhhhhhhHHHHHHHHHHHhccC---------------------------------ccccchh--hhHHHH
Q 022226 91 GIGYSSPTLSSAIVDLTPAFTFILALISRGID---------------------------------CDFVQGA--STSGSF 135 (300)
Q Consensus 91 al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~---------------------------------~~~~~G~--~l~a~~ 135 (300)
|++||+.+.+.++..+.-+++++++++++||| ++..+|| ++.+++
T Consensus 99 a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~ 178 (334)
T PF06027_consen 99 AYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAI 178 (334)
T ss_pred HhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHH
Confidence 99999999999999999999999999999999 2346899 999999
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCC-CcccccCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 022226 136 FLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP-NSWRLKPDTELIAIGCSAFFAVALRSLAHTWACH 214 (300)
Q Consensus 136 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~ 214 (300)
.||++++..++..++.+. ....+...+++.++..+...+.|.+. ...+. + ...........++...-|.+....++
T Consensus 179 lya~~nV~~E~~v~~~~~-~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w-~-~~~~~~~v~~~~~lf~~y~l~p~~l~ 255 (334)
T PF06027_consen 179 LYAVSNVLEEKLVKKAPR-VEFLGMLGLFGFIISGIQLAILERSGIESIHW-T-SQVIGLLVGYALCLFLFYSLVPIVLR 255 (334)
T ss_pred HHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHheehhhhhccCC-C-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988875 77888888899988888877777642 11111 1 12222222223355667778889999
Q ss_pred hcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhhhh
Q 022226 215 KKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEK 271 (300)
Q Consensus 215 ~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~~~ 271 (300)
..+|+.+.+-..+..+++++++++++||++++..++|.++|+.|+.++...+++.++
T Consensus 256 ~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 256 MSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred hCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 999999999999999999999999999999999999999999999999876655543
No 15
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.82 E-value=5.9e-21 Score=162.99 Aligned_cols=249 Identities=15% Similarity=0.105 Sum_probs=190.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 022226 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (300)
Q Consensus 5 ~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~ 84 (300)
++..++.++ ..+..+.++.+..++ .+|.+..-.|+.+-.++ -.|..+..+.....|+..+ .++.++|..|+.+
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mli-t~pcliy~~~~v~gp~g~R---~~LiLRg~mG~tg 110 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLI-TYPCLIYYMQPVIGPEGKR---KWLILRGFMGFTG 110 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhh-hheEEEEEeeeeecCCCcE---EEEEeehhhhhhH
Confidence 344444455 666666666666654 58999999998877776 6665444332221134444 6788899999888
Q ss_pred HHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC--------------------------------------cccc
Q 022226 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID--------------------------------------CDFV 126 (300)
Q Consensus 85 ~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~--------------------------------------~~~~ 126 (300)
..++|++++|.+.++|++|...+|.++.+++|.++||+ +...
T Consensus 111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~ 190 (346)
T KOG4510|consen 111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDI 190 (346)
T ss_pred HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccC
Confidence 88999999999999999999999999999999999999 1112
Q ss_pred chh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccccc-CchhHHHHHHHHHHHHH
Q 022226 127 QGA--STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLK-PDTELIAIGCSAFFAVA 203 (300)
Q Consensus 127 ~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~i~~t~ 203 (300)
.|. ++.++++-|.-+++.|++.++.+. ...+.+..+++.+...+....++ .|..+ ...+|+.++.+|++ ..
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGvf-gf 264 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGVF-GF 264 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehhh-hh
Confidence 344 777777777777888999888876 55566666777776666555443 23322 23456666777874 57
Q ss_pred HHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccc
Q 022226 204 LRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 204 ~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~ 266 (300)
+++.+...++++-.++.+++..+.+-+++.+|.++++||.|++++++|+++|+.+.+.+..+|
T Consensus 265 igQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 265 IGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999988776543
No 16
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.80 E-value=2.6e-17 Score=143.22 Aligned_cols=261 Identities=8% Similarity=0.010 Sum_probs=205.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHH
Q 022226 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP--PLTVSIICKIFGLGLI 80 (300)
Q Consensus 3 ~~~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~gl~ 80 (300)
..|+++.-+.+.++||..+...|.. ++ +++.++...|...+..+ ++.+....++.+... ..+++.+..+.+.++.
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~-~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPF-MLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 3589999999999999999999976 55 99999999999999887 666554443321111 2234455556666666
Q ss_pred HHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC------------------ccccchh----hhHHHHHHH
Q 022226 81 SCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID------------------CDFVQGA----STSGSFFLS 138 (300)
Q Consensus 81 g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~------------------~~~~~G~----~l~a~~~~a 138 (300)
-..+...|.+|..+-..-+++.=.+..|++..+++.+++||| +.+..|. .+.=+++|+
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~ 161 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALALSFG 161 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999 2333444 888889999
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 022226 139 LLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGP 218 (300)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~ 218 (300)
.|....|+. +.++ .+-.+..++.-.+..+.+.+..++.+....-.+...+..+...|+ .|.++..+|..+-++++-
T Consensus 162 ~Ygl~RK~~--~v~a-~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpl 237 (293)
T COG2962 162 LYGLLRKKL--KVDA-LTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPL 237 (293)
T ss_pred HHHHHHHhc--CCch-HHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCH
Confidence 999765553 3444 777777777777777777666655432111123344666666776 789999999999999999
Q ss_pred ceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhhh
Q 022226 219 VYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEE 270 (300)
Q Consensus 219 ~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~~ 270 (300)
+..+..+|++|..-.+++++++||+++..+.+.-++|-.|+.++....-+++
T Consensus 238 s~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~ 289 (293)
T COG2962 238 STLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTA 289 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887654443
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.79 E-value=3e-17 Score=147.94 Aligned_cols=239 Identities=14% Similarity=0.075 Sum_probs=180.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHHHHH
Q 022226 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLT-VSIICKIFGLGLISCCV 84 (300)
Q Consensus 6 ~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~gl~g~~~ 84 (300)
+++..++++++||.+++..|... |.++.++. |..++.++ +....... |+ ++.+ ++.+..-.+.|.+-..+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~-~~~~~~~~-~~---~~~~~~~~~~~g~l~G~~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALI-LSIAIAIF-VL---PEFWALSIFLVGLLSGAFWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHH-HHHHHHHH-hC---CcccccHHHHHHHHHHHHHHhh
Confidence 46788999999999999999875 58888775 78888877 65544432 22 2223 33333344444444788
Q ss_pred HHHHHHhccccChhhHhhhhh-hhHHHHHHHHHHHhccC----------------------------c-------cc-cc
Q 022226 85 QTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRGID----------------------------C-------DF-VQ 127 (300)
Q Consensus 85 ~~~~~~al~~~~~~~a~~i~~-l~Pi~~~ila~~~l~e~----------------------------~-------~~-~~ 127 (300)
+.+++.++++++.+.+-.+.+ +.|+++.+++.+++||+ + .. ..
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~ 152 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKK 152 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhh
Confidence 999999999999999998888 88899999999999998 1 11 46
Q ss_pred hh--hhHHHHHHHHHHHHHHHHHhhcCchhHH---HHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHH
Q 022226 128 GA--STSGSFFLSLLYIVQTSIIREYPEELMA---TFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAV 202 (300)
Q Consensus 128 G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t 202 (300)
|. .++++++|+.|.+..|+. ++++ ... ..+.++.++.+..+.. .+.+ .+ .+...+..++ .|++ +
T Consensus 153 Gi~~~l~sg~~y~~~~~~~~~~--~~~~-~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~--~~~~~~~~~~-~Gi~-~ 221 (290)
T TIGR00776 153 GILLLLMSTIGYLVYVVVAKAF--GVDG-LSVLLPQAIGMVIGGIIFNLGH--ILAK--PL--KKYAILLNIL-PGLM-W 221 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CCCc-ceehhHHHHHHHHHHHHHHHHH--hccc--ch--HHHHHHHHHH-HHHH-H
Confidence 77 999999999999988875 3554 666 4444444544433322 1111 12 1223354555 7887 7
Q ss_pred HHHHHHHHHHhh-hcCCceeecchhhHHHHHHHHHHHHhcCcccchhh----hhHHHHhhhhhhhhc
Q 022226 203 ALRSLAHTWACH-KKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSV----VGATIVAFGFYSVIW 264 (300)
Q Consensus 203 ~~~~~l~~~a~~-~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~----iG~~lil~Gv~l~~~ 264 (300)
++++.+|..+.+ +.+++.++++.+++|+.+.+++++++||+.+..++ +|+++++.|+.+...
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 999999999999 99999999999999999999999999999999999 999999999988754
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.57 E-value=1.7e-12 Score=117.83 Aligned_cols=231 Identities=13% Similarity=0.123 Sum_probs=176.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHH
Q 022226 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTF 112 (300)
Q Consensus 33 ~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ 112 (300)
.|..+++..+....+. -.+.....+++ +.++..+......+.+..+...+-+.+++|++.+.-.++-++.|+.++
T Consensus 31 ~~~~lt~~q~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vm 105 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALF-SFILLSLFKFP----KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVM 105 (303)
T ss_pred ccHHHHHHHHHHHHHH-HHHHHHhcccc----CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHH
Confidence 4899999999998887 55544333311 122233466667777778888999999999999999999999999999
Q ss_pred HHHHHHhccC----------------------------------ccccchh--hhHHHHHHHHHHHHHHHHHhhcCc-hh
Q 022226 113 ILALISRGID----------------------------------CDFVQGA--STSGSFFLSLLYIVQTSIIREYPE-EL 155 (300)
Q Consensus 113 ila~~~l~e~----------------------------------~~~~~G~--~l~a~~~~a~~~v~~~~~~~~~~~-~~ 155 (300)
+++.+++|+| ..+..|+ .+++.++-+...+.++|..++++. +.
T Consensus 106 i~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~ 185 (303)
T PF08449_consen 106 ILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPW 185 (303)
T ss_pred HHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 9999999999 0112388 888888999999999998776543 37
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCCC--cccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHH
Q 022226 156 MATFICCVFVTIQSTVVALI--AERNPN--SWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVF 231 (300)
Q Consensus 156 ~~~~~~~~~~~i~~~~~~~~--~~~~~~--~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~ 231 (300)
..+++..+++.+...+.... .++... ......+..+..++...+ ...++....+...++.++...+++..+.-+.
T Consensus 186 ~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~ 264 (303)
T PF08449_consen 186 ELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFL 264 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHH
Confidence 78889999998888877776 222111 111122334445555544 5566777777899999999999999999999
Q ss_pred HHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhh
Q 022226 232 AIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 269 (300)
Q Consensus 232 a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~ 269 (300)
+++++++++||++++.+++|.++++.|+.+..+.++|+
T Consensus 265 sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 265 SILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999999999999999988655443
No 19
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.51 E-value=5e-14 Score=110.13 Aligned_cols=125 Identities=20% Similarity=0.308 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 022226 135 FFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACH 214 (300)
Q Consensus 135 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~ 214 (300)
++|+.+.+..|+..++.|+ ...+++.+..+++ ..+.....+... ....+...+...++.+++++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISP-LSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCCH-HHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4688899999999888875 9999999999998 666666554432 22234456778888899889999999999999
Q ss_pred hcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 215 KKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 215 ~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
+.++++++++.+++|+++.++++++++|+++..+++|+++++.|++++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865
No 20
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.47 E-value=1.4e-12 Score=117.00 Aligned_cols=197 Identities=13% Similarity=0.114 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC--------------------------------cc
Q 022226 77 LGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID--------------------------------CD 124 (300)
Q Consensus 77 ~gl~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~--------------------------------~~ 124 (300)
...+-+..++.+..|+++++++..+++.++..+|+..++.++..|| .+
T Consensus 165 fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~ 244 (416)
T KOG2765|consen 165 FCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASR 244 (416)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccc
Confidence 3444488999999999999999999999999999999999999999 12
Q ss_pred ccchh--hhHHHHHHHHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccCchhHHHHHHHH
Q 022226 125 FVQGA--STSGSFFLSLLYIVQTSIIREYP---EELMATFICCVFVTIQSTVVALIAERN-PNSWRLKPDTELIAIGCSA 198 (300)
Q Consensus 125 ~~~G~--~l~a~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 198 (300)
..+|+ ++++|+.|+.|.++.||...+.+ +...+.++.-++..++++|..++...- -..+..|+..+...++..+
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ 324 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN 324 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence 25888 99999999999999888766553 112233455556666666655554331 1245555666677788888
Q ss_pred HHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhhhhcc
Q 022226 199 FFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMI 273 (300)
Q Consensus 199 i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~~~~~ 273 (300)
+++|+++=++|.+|+-..++..+..-+.++...+++.+.++=+.++++..++|.+.|++|.+++++..+-.++++
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~~~ 399 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKKDP 399 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999997655554443
No 21
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.43 E-value=2.1e-12 Score=116.21 Aligned_cols=247 Identities=15% Similarity=0.149 Sum_probs=185.8
Q ss_pred HHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhh
Q 022226 22 TLNKAAMN--KGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTL 99 (300)
Q Consensus 22 ~~~K~~~~--~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~al~~~~~~~ 99 (300)
...|..++ +.-.|..++..++..+.+. .+....++.++.. +..++..+..++..|++.+++.++-..++.+.+.+.
T Consensus 34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~-~~v~~~l~~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF 111 (316)
T KOG1441|consen 34 ILNKYILSKYGFPFPITLTMLHLFCGALA-LLVIKVLKLVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSF 111 (316)
T ss_pred EeeHhhhccCCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccchhH
Confidence 45688887 4467999999988888876 6655544333322 222344567888889998999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHHHhccC------------------------ccccchh--hhHHHHHHHHHHHHHHHHHh----
Q 022226 100 SSAIVDLTPAFTFILALISRGID------------------------CDFVQGA--STSGSFFLSLLYIVQTSIIR---- 149 (300)
Q Consensus 100 a~~i~~l~Pi~~~ila~~~l~e~------------------------~~~~~G~--~l~a~~~~a~~~v~~~~~~~---- 149 (300)
...+-.++|+++.++++++.+|+ +-...|. ++++.++.+...+..+++.+
T Consensus 112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~ 191 (316)
T KOG1441|consen 112 YQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGE 191 (316)
T ss_pred HHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999 1224677 89999999999999888763
Q ss_pred hcCchhHHHHHHHHHHHHHHH-HHHHHhcCCCC-cccc-cCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchh
Q 022226 150 EYPEELMATFICCVFVTIQST-VVALIAERNPN-SWRL-KPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKP 226 (300)
Q Consensus 150 ~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~ 226 (300)
+.++ .....++.-.+.+.++ |.....|++.. .+.. ++.......++.. +....-...-+..+.+.+|..-+..+.
T Consensus 192 ~~~~-~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~ 269 (316)
T KOG1441|consen 192 SLNS-MNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGH 269 (316)
T ss_pred ccCc-hHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhcc
Confidence 2444 8888888888888888 77776555332 0011 1111222333333 233333445557899999999999999
Q ss_pred hHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhhhhc
Q 022226 227 LGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKM 272 (300)
Q Consensus 227 l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~~~~ 272 (300)
+.-++.+..|+++++|+.++.+..|.++.+.|++++.+.|.+++++
T Consensus 270 ~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 270 MKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred ceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999999999766665543
No 22
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.43 E-value=3.6e-12 Score=97.75 Aligned_cols=132 Identities=19% Similarity=0.161 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAH 209 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~ 209 (300)
++++++.+++-.+..|---++.++ ...+....++..+.+..+....+... .....+...|..+...| ++++++..+|
T Consensus 8 ALLsA~fa~L~~iF~KIGl~~vdp-~~At~IRtiVi~~~l~~v~~~~g~~~-~~~~~~~k~~lflilSG-la~glswl~Y 84 (140)
T COG2510 8 ALLSALFAGLTPIFAKIGLEGVDP-DFATTIRTIVILIFLLIVLLVTGNWQ-AGGEIGPKSWLFLILSG-LAGGLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHhccccCc-cHHHHHHHHHHHHHHHHHHHhcCcee-cccccCcceehhhhHHH-HHHHHHHHHH
Confidence 788999999998887665566765 77888888888877777766554321 11112556788888888 5899999999
Q ss_pred HHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 210 TWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 210 ~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
++|++..+++++.++.-+.|+++.+++++++||++|..+++|++||..|+.++..
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999999999999999999999999999999999999999999987654
No 23
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.19 E-value=2e-10 Score=88.26 Aligned_cols=123 Identities=8% Similarity=0.003 Sum_probs=105.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 022226 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (300)
Q Consensus 5 ~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~ 84 (300)
+..++.++++++||...++.|..+++ +||...++.|.....++ ++.+.+..++.+.....+.|.|..+.+.|+.+...
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~-l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls 80 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIF-LLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHH-HHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence 34678899999999999999999986 99999999999998888 88777666654332235777888888899877899
Q ss_pred HHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCcc--ccchh
Q 022226 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDCD--FVQGA 129 (300)
Q Consensus 85 ~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~--~~~G~ 129 (300)
..+||.|++...++.++-+-.+.|.++.++++++++||.+ ..+|.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~ 127 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGI 127 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999933 23566
No 24
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.14 E-value=1.9e-10 Score=89.71 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhcc
Q 022226 15 CLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIG 93 (300)
Q Consensus 15 ~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~~~~~~~al~ 93 (300)
++||...+..|...++ .||...+++|+.++++. +.... ..+++.. ...+.+++......|.++ ..++.+++.|++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGIL-LILLL-ILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHH-hhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4799999999999987 99999999999999852 22322 2233222 355667778888889987 899999999999
Q ss_pred ccChhhHhhhhhhhHHHHHHHHHHHhccCccc
Q 022226 94 YSSPTLSSAIVDLTPAFTFILALISRGIDCDF 125 (300)
Q Consensus 94 ~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~~ 125 (300)
+++++.++.+.++.|+++.++++++++|+.++
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~ 108 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSW 108 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999543
No 25
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=5.2e-08 Score=86.51 Aligned_cols=265 Identities=10% Similarity=0.075 Sum_probs=194.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 022226 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV--YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (300)
Q Consensus 4 ~~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~--~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g 81 (300)
.++....+.-++.-..+-+..|.++.+.=-|..+.. .+.+...+. +...-..+.-+ .++++++..++..-..++-
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~-v~~lk~~~lv~--~~~l~~~~~kk~~P~~~lf 87 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLV-VLVLKRLGLVN--FRPLDLRTAKKWFPVSLLF 87 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHhceee--cCCcChHHHHHHccHHHHH
Confidence 355666677777777788889999877334444444 787777766 55443222222 2577888888888888887
Q ss_pred HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCcc------------------------ccchh--hhHHHH
Q 022226 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDCD------------------------FVQGA--STSGSF 135 (300)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~------------------------~~~G~--~l~a~~ 135 (300)
.++...-..+++|.+...-+++-++.|+++++....++|.++. ...|- ++...+
T Consensus 88 ~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~ 167 (314)
T KOG1444|consen 88 VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCL 167 (314)
T ss_pred HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHH
Confidence 7777777889999999999999999999999999999997711 11233 777788
Q ss_pred HHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHhcCCC---Cccc-ccCchhHHHHHHHHHHHHHHHHHHHH
Q 022226 136 FLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERNP---NSWR-LKPDTELIAIGCSAFFAVALRSLAHT 210 (300)
Q Consensus 136 ~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~-~~~~~~~~~l~~~~i~~t~~~~~l~~ 210 (300)
+-+.+.+..|+..+..+ ....++++..+.+.+......+++++.. .+.+ ......+.++...++++-++.|..+
T Consensus 168 ~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~- 246 (314)
T KOG1444|consen 168 TTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSF- 246 (314)
T ss_pred HHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH-
Confidence 88888877776543321 1267888999999888888887776511 1110 1123457788888888888887655
Q ss_pred HHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhhhhc
Q 022226 211 WACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKM 272 (300)
Q Consensus 211 ~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~~~~ 272 (300)
+..+..+++..+++....-..+.+-+.++.|++.++...+|..+-+.|-.++++.+.++++.
T Consensus 247 ~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 247 LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred HHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 48899999999999988888888888888999999999999999998888888766555433
No 26
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.04 E-value=3.6e-09 Score=94.93 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAH 209 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~ 209 (300)
.+.++++|+.+.+..|+..++.+. ...+.+..+++...|........ ..|...+. .+......+.+.....+..+
T Consensus 6 ~~~aa~~~a~~~~~~k~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 6 VVFSALMHAGWNLMAKSHADKEPD---FLWWALLAHSVLLTPYGLWYLAQ-VGWSRLPA-TFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhH---HHHHHHHHHHHHHHHHHHHhccc-CCCCCcch-hhHHHHHHHHHHHHHHHHHH
Confidence 578999999999999977666432 34555666666666665532111 23433222 33334444555778889999
Q ss_pred HHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 210 TWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 210 ~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
++++++.+++.++++.+..|+++.+++++++||+++..+++|.++++.|+.++..
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999988764
No 27
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.95 E-value=1.8e-08 Score=89.00 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=96.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 022226 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTS--DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (300)
Q Consensus 4 ~~~~~~l~~~~~~w~~~~~~~K~~~~~~~~--p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g 81 (300)
.++..+.++++++|+...+..|...++ .+ +.....+|+.+++++ +.+......++ +..+.+.+..+...|.++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALL-LLPFAWFLGPN---PQALSLQWGALLYLGLIG 201 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHH-HHHHHHhcCCC---CCcchHHHHHHHHHHHHH
Confidence 467889999999999999999999865 66 455666889999998 88876553332 233566667788889888
Q ss_pred -HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCcc
Q 022226 82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDCD 124 (300)
Q Consensus 82 -~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~ 124 (300)
...+.++++++++.+++.++.+.++.|+++.++++++++|+.+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~ 245 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLS 245 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8899999999999999999999999999999999999999943
No 28
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.93 E-value=8.9e-09 Score=93.15 Aligned_cols=134 Identities=12% Similarity=0.126 Sum_probs=105.2
Q ss_pred cchh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccc--ccCchhHHHHHHHHHHH
Q 022226 126 VQGA--STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWR--LKPDTELIAIGCSAFFA 201 (300)
Q Consensus 126 ~~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~i~~ 201 (300)
..|. .++++++|+...+..|.. .+.++ .++.+++++++.+++.+......+.. ... ..+...+ .....+.+.
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~-~~~~~~R~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~ 82 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAYFKLI-YYVPA-DEILTHRVIWSFFFMVVLMSICRQWS-YLKTLIQTPQKI-FMLAVSAVL 82 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-cCCCH-HHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHcCHHHH-HHHHHHHHH
Confidence 4677 889999999999888765 56765 89999999999887776654332111 100 0011222 233356667
Q ss_pred HHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 202 VALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 202 t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
.++.+.++++++++.+++.++...++.|++..++++++++|+++..+++|.++.+.|+.++.
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999998765
No 29
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.91 E-value=4.5e-08 Score=83.08 Aligned_cols=181 Identities=14% Similarity=0.070 Sum_probs=133.1
Q ss_pred HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC-------------------------------ccccchh-
Q 022226 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID-------------------------------CDFVQGA- 129 (300)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~-------------------------------~~~~~G~- 129 (300)
.+.++.-..|+|+.+=....+=-++-|+=+++++..+.+++ ++...|.
T Consensus 96 LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GEl 175 (337)
T KOG1580|consen 96 LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGEL 175 (337)
T ss_pred HHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHH
Confidence 67777888999999877777778899999999999888777 1223455
Q ss_pred h-hHHHHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHhcCC--CCcccccCchhHHHHHHHHHHHHHHH
Q 022226 130 S-TSGSFFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAERN--PNSWRLKPDTELIAIGCSAFFAVALR 205 (300)
Q Consensus 130 ~-l~a~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~i~~t~~~ 205 (300)
. +++--.=+.-...+.++++++.. ..+++.+..+.+++.+.....++++. ...+....+..|.-+...++ ++.++
T Consensus 176 LL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LG 254 (337)
T KOG1580|consen 176 LLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLG 254 (337)
T ss_pred HHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhh
Confidence 3 33322223334566777666542 26788888888887766555544331 01111113344666777776 77889
Q ss_pred HHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 206 SLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 206 ~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
++..+..+...||-.-|++....-.|+++.++++++.+++..|++|.++++.|+..=.
T Consensus 255 Q~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 255 QWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred hHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 9999999999999999999999999999999999999999999999999999987533
No 30
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.87 E-value=2e-08 Score=86.15 Aligned_cols=216 Identities=9% Similarity=0.044 Sum_probs=159.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHH
Q 022226 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTF 112 (300)
Q Consensus 33 ~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ 112 (300)
.|..-.|.-+.+-+++ -.|+..++++- .+ ..|...++.+++..-.+++...|.||++-..+..+-.-....+.
T Consensus 47 ~Pt~QtFl~Y~LLalV-Y~~~~~fR~~~---~~---~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~ 119 (336)
T KOG2766|consen 47 APTSQTFLNYVLLALV-YGPIMLFRRKY---IK---AKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVL 119 (336)
T ss_pred CccHHHHHHHHHHHHH-HhhHHHhhhHH---HH---HHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHH
Confidence 4777888888888888 88887664321 12 22344566666665667777889999999999999888888899
Q ss_pred HHHHHHhccC--------------------------------ccccchh--hhHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 022226 113 ILALISRGID--------------------------------CDFVQGA--STSGSFFLSLLYIVQTSIIREYPEELMAT 158 (300)
Q Consensus 113 ila~~~l~e~--------------------------------~~~~~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~ 158 (300)
+++|+++|.| .+..+|| .++++-+|+..++...-+.++.+. ...+
T Consensus 120 ~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d~-~elm 198 (336)
T KOG2766|consen 120 VLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNADR-VELM 198 (336)
T ss_pred HHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCcH-HHHH
Confidence 9999999988 2345888 999999999999988888888876 8888
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCCcccccCchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHH
Q 022226 159 FICCVFVTIQSTVVALIAER-NPNSWRLKPDTELIAIGCSA-FFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMG 236 (300)
Q Consensus 159 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~ 236 (300)
....++|++...+- .+.+. +....+ + .|-...|+. ..+..+-|.+.-..+|..+++...+-....-.|+.+.
T Consensus 199 ~~lgLfGaIIsaIQ-~i~~~~~~~tl~--w--~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i- 272 (336)
T KOG2766|consen 199 GFLGLFGAIISAIQ-FIFERHHVSTLH--W--DSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI- 272 (336)
T ss_pred HHHHHHHHHHHHHH-HhhhccceeeEe--e--hHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH-
Confidence 88899999988887 43433 221111 1 122222332 2233344445557788889999988888888888888
Q ss_pred HHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 237 VTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 237 ~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
..+|-+.++...+.-+.+..|..++.
T Consensus 273 -~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 273 -RTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred -HHHhcchhhhhHHHHHHHHHhhEEee
Confidence 56788899999999999999998873
No 31
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.87 E-value=2.2e-06 Score=77.34 Aligned_cols=257 Identities=12% Similarity=0.102 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCC------CHHHHHHH
Q 022226 7 TAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYRN---RTRPPL------TVSIICKI 74 (300)
Q Consensus 7 ~~~l~~~~~~w~~~~~~~K~~~~~~---~~p~~~~~~R~~~a~l~~ll~~~~~~~~~---~~~~~~------~~~~~~~~ 74 (300)
++.++...+.++......|++-..+ ..|...++.-=.+-.++ ...+.+...|+ +....+ ++++..++
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~-c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~ 95 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVF-CLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV 95 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHH
Confidence 5667788899999999999986554 56666666665655555 44444443211 111122 23456778
Q ss_pred HHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC--------------------------------
Q 022226 75 FGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID-------------------------------- 122 (300)
Q Consensus 75 ~~~gl~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~-------------------------------- 122 (300)
.+.+++.++.+-+.|.++.+.+++.-.+..++-.+.|+++..+++++|
T Consensus 96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~ 175 (345)
T KOG2234|consen 96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSE 175 (345)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCC
Confidence 888888877777999999999999999999999999999999999999
Q ss_pred ---ccccchh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHH-HHHHHHHHHHHHHHHhcCCC-C---cccccCchhHH
Q 022226 123 ---CDFVQGA--STSGSFFLSLLYIVQTSIIREYPEELMATFI-CCVFVTIQSTVVALIAERNP-N---SWRLKPDTELI 192 (300)
Q Consensus 123 ---~~~~~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~-~---~~~~~~~~~~~ 192 (300)
++...|. .+.+++.-+...+...|+.++-+.+..+-=. ..++|.++.+...+..+... . .+...+...|.
T Consensus 176 ~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~ 255 (345)
T KOG2234|consen 176 SSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWL 255 (345)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHH
Confidence 1224666 6666666666667667766553322222222 23334433333333322211 1 11111233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhh
Q 022226 193 AIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 269 (300)
Q Consensus 193 ~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~ 269 (300)
.++..++ +=.+-...+|+.|-..=.-...+..+++.+.++.++|-++|....+|..+|+.++.++...+.++
T Consensus 256 vVl~~a~-----gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 256 VVLLNAV-----GGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHhc-----cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 5544443 33344456666666665666668889999999999999999999999999999999999666555
No 32
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.85 E-value=2.8e-08 Score=87.93 Aligned_cols=133 Identities=12% Similarity=0.182 Sum_probs=103.2
Q ss_pred hh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCC---CcccccCchh-HHHHHHHHHHH
Q 022226 128 GA--STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP---NSWRLKPDTE-LIAIGCSAFFA 201 (300)
Q Consensus 128 G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~~i~~ 201 (300)
|. .++++++|+...+..|.. .+.++ .++.++.++++++.+.+......+.- ..+....... +..+...|++
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~~~~~-~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 79 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-KPLPA-TDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL- 79 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-ccCCH-HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-
Confidence 55 788999999999998874 46765 99999999999887766554432210 0111111122 3345555554
Q ss_pred HHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 202 VALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 202 t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
.++.+.++++++++.++..++...++.|+++.++++++++|+++..+++|..+.+.|+.++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999988764
No 33
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.81 E-value=1e-08 Score=81.03 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHH--HhcCcccchhhhhHHHHhhhhhhhhccch
Q 022226 194 IGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVT--LLGDTLYLGSVVGATIVAFGFYSVIWGQS 267 (300)
Q Consensus 194 l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~--~l~E~~~~~~~iG~~lil~Gv~l~~~~~~ 267 (300)
.+++|+++++++|.+|++++++.|.+.+.++..+.++...+.++. ++||++|+.+++|.++|+.|++++.++++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 457788999999999999999999999999999999888888885 89999999999999999999999875433
No 34
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.77 E-value=4.2e-07 Score=79.83 Aligned_cols=184 Identities=14% Similarity=0.162 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC------------------------
Q 022226 67 TVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID------------------------ 122 (300)
Q Consensus 67 ~~~~~~~~~~~gl~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~------------------------ 122 (300)
++++..++.+.+++..+.+.+.+.++++.+++.-.++.++-.+++++++++++|+|
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 46677888899999989999999999999999999999999999999999999999
Q ss_pred -c----------------cccchh--hhHHHHHHHHHHHHHHHHHhhcCchhH-HHHHHHHHHHHHHHHHHHHhcCCC--
Q 022226 123 -C----------------DFVQGA--STSGSFFLSLLYIVQTSIIREYPEELM-ATFICCVFVTIQSTVVALIAERNP-- 180 (300)
Q Consensus 123 -~----------------~~~~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~-- 180 (300)
. +...|. .++++++-++..+...|+.|+.+.+.. -.....++|.++.++.....+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~ 172 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAIS 172 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 0 113566 777778888888888887776543222 333334444444444433322211
Q ss_pred --CcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHH
Q 022226 181 --NSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIV 255 (300)
Q Consensus 181 --~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~li 255 (300)
..++..+...|..++ .+.++=.+-...+|+.|...=..-..+..+.+.+.++.++|.+++....+|+.+|
T Consensus 173 ~~g~f~G~~~~~~~~i~-----~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 173 ESGFFHGYSWWVWIVIF-----LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cCCchhhcchHHHHHHH-----HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 112221222333333 3344444566688888988888888899999999999999999999999998764
No 35
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.77 E-value=1.1e-07 Score=77.06 Aligned_cols=134 Identities=13% Similarity=0.193 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhh------cCchhHHHHHHHHHHHHHHHHHHHHhcCCCC--ccc-cc------CchhHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIRE------YPEELMATFICCVFVTIQSTVVALIAERNPN--SWR-LK------PDTELIAI 194 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~-~~------~~~~~~~l 194 (300)
++.|.++.+++.+..|+..++ ..++..+..+....+.+.+.+.....|++.. ... .. ....+..+
T Consensus 5 ~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (153)
T PF03151_consen 5 ALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLL 84 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHH
Confidence 688999999999998886554 2235888999999999999999888877431 111 00 12335555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 195 GCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 195 ~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
+..++.. ..-....+..+++.+|...++...+..+..+++|++++||+++..+++|.++.+.|.+++++
T Consensus 85 ~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 85 ILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 5566544 44455667799999999999999999999999999999999999999999999999987753
No 36
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.73 E-value=4.3e-08 Score=75.78 Aligned_cols=108 Identities=12% Similarity=0.194 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHH
Q 022226 160 ICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTL 239 (300)
Q Consensus 160 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~ 239 (300)
+...++.+..........+....+.......+...+..|++....++.+|.+++++.+ ..++....+.|+++.+++.++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444322111111112234556666677677789999999999999 488899999999999999999
Q ss_pred hcCcccchhhhhHHHHhhhhhhhhccchh
Q 022226 240 LGDTLYLGSVVGATIVAFGFYSVIWGQSE 268 (300)
Q Consensus 240 l~E~~~~~~~iG~~lil~Gv~l~~~~~~~ 268 (300)
++|+++...++|.++++.|+.++.+.+.+
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999876544
No 37
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.72 E-value=8.9e-07 Score=78.05 Aligned_cols=229 Identities=14% Similarity=0.137 Sum_probs=157.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHH
Q 022226 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTF 112 (300)
Q Consensus 33 ~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ 112 (300)
++..+++.+-+.+.++ -... ++.++.. ....+.+......+........+-|.|++|.+=..-.+--++=-+=++
T Consensus 50 ~~~fL~~~q~l~~~~~-s~~~--l~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLV-SYAM--LKWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred ccHHHHHHHHHHHHHH-HHHH--Hhccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 6888888888888876 4332 2223211 122333466677777777888888999999976666666666666778
Q ss_pred HHHHHHhccC---------------------------------ccccchh-hhHHHHHHHHHH-HHHHHHHhhcC-chhH
Q 022226 113 ILALISRGID---------------------------------CDFVQGA-STSGSFFLSLLY-IVQTSIIREYP-EELM 156 (300)
Q Consensus 113 ila~~~l~e~---------------------------------~~~~~G~-~l~a~~~~a~~~-v~~~~~~~~~~-~~~~ 156 (300)
+++.++.++| ++...|. .+..-+.+=.++ ..++++-+++. ....
T Consensus 125 lmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~ 204 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLH 204 (327)
T ss_pred HHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhH
Confidence 8888888888 1223555 444444433333 45666655422 2377
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-C--cccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHH
Q 022226 157 ATFICCVFVTIQSTVVALIAERNP-N--SWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAI 233 (300)
Q Consensus 157 ~~~~~~~~~~i~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~ 233 (300)
++++..+++++....... ..+.. . ++...++..+.-++.... +..+++...++-+++-|+-....++.+-=++++
T Consensus 205 mM~~vNLf~~i~~~~~li-~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si 282 (327)
T KOG1581|consen 205 MMFGVNLFSAILNGTYLI-LQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSI 282 (327)
T ss_pred HHHHHHHHHHHHHHHhhh-cCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHH
Confidence 888888888887766533 22211 1 122223445555666665 456778888889999999999999999999999
Q ss_pred HHHHHHhcCcccchhhhhHHHHhhhhhhhhccchh
Q 022226 234 IMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSE 268 (300)
Q Consensus 234 i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~ 268 (300)
+.+.+.+|++++..+++|..+++.|+++-..-++|
T Consensus 283 ~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 283 MLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 99999999999999999999999999987654444
No 38
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.70 E-value=4e-07 Score=82.27 Aligned_cols=119 Identities=10% Similarity=0.042 Sum_probs=93.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 022226 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (300)
Q Consensus 5 ~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~ 83 (300)
.+.++.+.++++|+...+..|...++ .+|...... ..++++. +.+....... . ...+...+......|+++ .+
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~~-~~~~~~~-l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAE-HGPATVAIG-SLIAALI-FVPIGALQAG--E-ALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHH-HHHHHHH-HHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHHH
Confidence 36778999999999999999998765 788777544 4566666 7776544322 1 233555555567889998 88
Q ss_pred HHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCccc--cchh
Q 022226 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDCDF--VQGA 129 (300)
Q Consensus 84 ~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~~--~~G~ 129 (300)
.+.+|++++++.+++.++.+.++.|+++.++++++++|+.+. ..|.
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~ 269 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLAL 269 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999443 4666
No 39
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.68 E-value=2.4e-07 Score=85.89 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAH 209 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~ 209 (300)
++..-++|+.+.++.|...++--++....++.+.++++++.++++..+++. .+...+...|..+..+|+++ .+.+.++
T Consensus 18 ~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~~~~~~~ 95 (358)
T PLN00411 18 MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-SMYVITG 95 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-HHHHHHH
Confidence 667778888888888876655333488999999999999988887654321 11111223466777778776 4566688
Q ss_pred HHHhhhcCCceeecchhhHHHHHHHHHHHH------hcCcccchhhhhHHHHhhhhhhhhc
Q 022226 210 TWACHKKGPVYVSMYKPLGIVFAIIMGVTL------LGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 210 ~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~------l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
+.++++.+++.++.+.++.|+++.++++++ ++|+++..+++|.++-+.|+.++..
T Consensus 96 ~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 96 YIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 6999999999999999999988764
No 40
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.67 E-value=4.7e-06 Score=73.59 Aligned_cols=243 Identities=14% Similarity=0.083 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHH-HHHHHHHHHHHHHHHHHHHhccc
Q 022226 18 VGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSII-CKIFGLGLISCCVQTCLYVGIGY 94 (300)
Q Consensus 18 ~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~--~~~~~~~~~-~~~~~~gl~g~~~~~~~~~al~~ 94 (300)
+..+...+...+. --|+..+......-.++ -.......+++.+ ....+|+.. .++...|+..+.--.+-.++++|
T Consensus 30 ~Ltf~~~~~~~~f-~fPLf~ts~h~~v~flf-a~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~y 107 (349)
T KOG1443|consen 30 GLTFYFKWLTKNF-HFPLFVTSLHLAVKFLF-AALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEY 107 (349)
T ss_pred HHHHHhhhhhcCc-CCchHHHHHHHHHHHHH-HHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeee
Confidence 3344455544443 45777777766554443 1111111112111 024566544 45556677667777788999999
Q ss_pred cChhhHhhhhhhhHHHHHHHHHHHhccCcc------------------------ccchh------hhHHHHHHHHHHHHH
Q 022226 95 SSPTLSSAIVDLTPAFTFILALISRGIDCD------------------------FVQGA------STSGSFFLSLLYIVQ 144 (300)
Q Consensus 95 ~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~------------------------~~~G~------~l~a~~~~a~~~v~~ 144 (300)
++.+.-+..-+..++|+.+++.++.-||.+ ...|. .+.+++-|+.-..+.
T Consensus 108 VtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll 187 (349)
T KOG1443|consen 108 VTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLL 187 (349)
T ss_pred eeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999999999999999999999889821 13455 444555566666555
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCC-----CcccccCc-hhHHHHHHHHHHHHHHHHHHH---HHHhhh
Q 022226 145 TSIIREYPEELMATFICCVFVTIQSTVVALIAERNP-----NSWRLKPD-TELIAIGCSAFFAVALRSLAH---TWACHK 215 (300)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~-~~~~~l~~~~i~~t~~~~~l~---~~a~~~ 215 (300)
++.....+.|........-.-.+.++|..+..|+.. ..|...+. ..+..+.+.++ +...++.+- +..+.+
T Consensus 188 ~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~ 266 (349)
T KOG1443|consen 188 RNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSR 266 (349)
T ss_pred hcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeee
Confidence 543322233466777766677777888888888743 12222222 12333433333 333444333 357788
Q ss_pred cCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 216 KGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 216 ~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
.+....|+..-..-+-..+++.++.+|.++...+.|..+...|+.+..
T Consensus 267 Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~ 314 (349)
T KOG1443|consen 267 TSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHR 314 (349)
T ss_pred ccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999998873
No 41
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.58 E-value=7.8e-07 Score=80.30 Aligned_cols=128 Identities=12% Similarity=0.027 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAH 209 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~ 209 (300)
.++..+.|+...+..|...++.++ ...+++.+.++++.++++....+.. . .+...+.....+|++.....+.++
T Consensus 13 ~~~~~~iWg~~~~~~K~~~~~~~p-~~~~~~R~~~a~l~ll~~~~~~~~~---~--~~~~~~~~~~~~g~~~~~~~~~~~ 86 (292)
T PRK11272 13 LFALYIIWGSTYLVIRIGVESWPP-LMMAGVRFLIAGILLLAFLLLRGHP---L--PTLRQWLNAALIGLLLLAVGNGMV 86 (292)
T ss_pred HHHHHHHHhhHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999998877777765 9999999999998887776543221 1 123456666677777666778888
Q ss_pred HHHh-hhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 210 TWAC-HKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 210 ~~a~-~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
+.+. ++.+++.++...++.|+++.+++++ ++|+++..+++|..+.+.|+++...
T Consensus 87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 8898 9999999999999999999999986 7999999999999999999988764
No 42
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.55 E-value=9.5e-07 Score=80.01 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAH 209 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~ 209 (300)
.+++++.|+...+..|...++.++ ....++.+.++++...+... .+ .. .+..+...++......+.++
T Consensus 9 ~l~~~~~Wg~~~~~~k~~~~~~~p-~~~~~~R~~~a~~~l~~~~~---~~--~~------~~~~~~~~g~~~~~~~~~~~ 76 (299)
T PRK11453 9 ALLVVVVWGLNFVVIKVGLHNMPP-LMLAGLRFMLVAFPAIFFVA---RP--KV------PLNLLLGYGLTISFGQFAFL 76 (299)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHhc---CC--CC------chHHHHHHHHHHHHHHHHHH
Confidence 678899999999999887778875 99999999887765544321 11 00 12223333444444555566
Q ss_pred HHHhhh-cCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 210 TWACHK-KGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 210 ~~a~~~-~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
+.++++ .+++.++.+.++.|+++.++++++++|+++..+++|.++.+.|+.+...
T Consensus 77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 778876 6888999999999999999999999999999999999999999988764
No 43
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.53 E-value=4.8e-07 Score=69.70 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 197 SAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 197 ~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
.+++..++++.+|..++++.+.+.+.+..++.++++.++|++++||+++..+++|.++++.|+.++..
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34467788999999999999999999999999999999999999999999999999999999987653
No 44
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.50 E-value=1.6e-06 Score=78.66 Aligned_cols=120 Identities=10% Similarity=0.083 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 022226 140 LYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPV 219 (300)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~ 219 (300)
+++.+|...++.+.|...+.+++.++.+...+.......+... .+..+|..++..|++. ...+.+.+.++++.+++
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s 92 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLK---ISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVS 92 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence 3456777777767779999999988877655541111111111 1344677788888874 77789999999999999
Q ss_pred eeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 220 YVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 220 ~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
..+++..+.|+++.++++++++|+++..++.|.++.+.|+.+..
T Consensus 93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999998654
No 45
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.39 E-value=3.9e-06 Score=77.74 Aligned_cols=124 Identities=8% Similarity=-0.022 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 022226 140 LYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPV 219 (300)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~ 219 (300)
+.+.+|...++.|-|..++.++++++.+...+....-..+...+. .....|..++.+|++..+. +...+.++++.+++
T Consensus 64 ~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~svs 141 (350)
T PTZ00343 64 YVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLFV-HFGAVISMGLGAVS 141 (350)
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHH
Confidence 345677777788745999999999998765544321111111111 0123466777788766544 66677999999999
Q ss_pred eeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhcc
Q 022226 220 YVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 220 ~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~ 265 (300)
.++++..++|++++++++++++|+++..++.|.++++.|+.+....
T Consensus 142 ~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~ 187 (350)
T PTZ00343 142 FTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK 187 (350)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc
Confidence 9999999999999999999999999999999999999999987643
No 46
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.38 E-value=2.5e-05 Score=68.94 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhh-hhHHHHHHHHHHHhccC------------------------
Q 022226 68 VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRGID------------------------ 122 (300)
Q Consensus 68 ~~~~~~~~~~gl~g~~~~~~~~~al~~~~~~~a~~i~~-l~Pi~~~ila~~~l~e~------------------------ 122 (300)
.+.+..-++.|++-.++|...+.+.++.+.+.+--+.. .+=+.+.+++.++++|.
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 36777778888888999999999999999999887765 56667899999999998
Q ss_pred ------c------cccchh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHH---HHHHHHHHHHHHHHHhcCCCCcccc
Q 022226 123 ------C------DFVQGA--STSGSFFLSLLYIVQTSIIREYPEELMATFI---CCVFVTIQSTVVALIAERNPNSWRL 185 (300)
Q Consensus 123 ------~------~~~~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~ 185 (300)
+ +...|. .+++.+.|..|.+..|- .+.++ .....= .++.++++.. ...+... .
T Consensus 122 ~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~-~~~~lPqaiGm~i~a~i~~---~~~~~~~--~-- 191 (269)
T PF06800_consen 122 YQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVSG-WSAFLPQAIGMLIGAFIFN---LFSKKPF--F-- 191 (269)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCCh-hHhHHHHHHHHHHHHHHHh---hcccccc--c--
Confidence 0 112345 88888999999887654 23333 444333 3333332222 2222211 1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccch----hhhhHHHHhhhhhh
Q 022226 186 KPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLG----SVVGATIVAFGFYS 261 (300)
Q Consensus 186 ~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~----~~iG~~lil~Gv~l 261 (300)
....|..++ .|+ .=.++-..+..+.++.|.+..-.+.-+..+++.+.|.++++|+=+.. ..+|.++++.|..+
T Consensus 192 -~k~~~~nil-~G~-~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 192 -EKKSWKNIL-TGL-IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred -ccchHHhhH-HHH-HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 112233332 222 33456677888999999999999999999999999999999988765 45688888877653
No 47
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.38 E-value=5.4e-06 Score=74.95 Aligned_cols=126 Identities=10% Similarity=0.009 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAH 209 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~ 209 (300)
++.+++.|+...+..|...++.++ ....++.+..+++++.++.. .+ ... ...+..++. +.+.....+.++
T Consensus 9 ~l~a~~~Wg~~~~~~k~~~~~~~P-~~~~~~R~~~a~l~l~~~~~---~~--~~~---~~~~~~~~~-~~l~~~~~~~~~ 78 (295)
T PRK11689 9 GLIAILLWSTMVGLIRGVSESLGP-VGGAAMIYSVSGLLLLLTVG---FP--RLR---QFPKRYLLA-GGLLFVSYEICL 78 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCh-HHHHHHHHHHHHHHHHHHcc---cc--ccc---cccHHHHHH-HhHHHHHHHHHH
Confidence 678899999999999988888875 99999999999887765421 11 111 011222222 222333334444
Q ss_pred HHHh----hhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhcc
Q 022226 210 TWAC----HKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 210 ~~a~----~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~ 265 (300)
+.++ +..++..++.+.++.|+++.++++++++|+++..+++|.++-+.|+.++...
T Consensus 79 ~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 79 ALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 4455 4567788899999999999999999999999999999999999999887743
No 48
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.34 E-value=8.1e-07 Score=68.64 Aligned_cols=83 Identities=23% Similarity=0.295 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHH
Q 022226 39 VYSNAFAAIFILLPSTFIYYRNRTR-PPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL 116 (300)
Q Consensus 39 ~~R~~~a~l~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~gl~g-~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~ 116 (300)
.+|+.++.++ +......+++.+.. +..+.+.+.+....|+++ ..++.++++|+++.+ +.++.+.++.|+++.++++
T Consensus 2 a~r~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLF-LLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHH-HHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 5899999998 77776664332110 122234456777778888 689999999999999 5899999999999999999
Q ss_pred HHhccCc
Q 022226 117 ISRGIDC 123 (300)
Q Consensus 117 ~~l~e~~ 123 (300)
+++|||.
T Consensus 80 ~~~~er~ 86 (113)
T PF13536_consen 80 LFFKERL 86 (113)
T ss_pred HHhcCCC
Confidence 9999993
No 49
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.26 E-value=5.3e-05 Score=64.18 Aligned_cols=247 Identities=12% Similarity=0.107 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 022226 14 ECLEVGSSTLNKAAMNK-GTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVG 91 (300)
Q Consensus 14 ~~~w~~~~~~~K~~~~~-~~~-p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~a 91 (300)
++.--.+..-.|..++. |.+ -+.+.+.+.+...+. ++.+-+.+.-+.| ..+........++....-+.---+
T Consensus 15 c~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~-l~iLk~l~~~~fR-----~t~aK~WfpiSfLLv~MIyt~SKs 88 (309)
T COG5070 15 CFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVG-LLILKFLRLVEFR-----LTKAKKWFPISFLLVVMIYTSSKS 88 (309)
T ss_pred HHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHH-HHHHHHHhHhhee-----hhhhhhhcCHHHHHHHHHHhcccc
Confidence 33333455556666544 222 245566777766665 5554333222221 111222223333333444444567
Q ss_pred ccccChhhHhhhhhhhHHHHHHHHHHHhccC---------------------c----------cccchh--hhHHHHHHH
Q 022226 92 IGYSSPTLSSAIVDLTPAFTFILALISRGID---------------------C----------DFVQGA--STSGSFFLS 138 (300)
Q Consensus 92 l~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~---------------------~----------~~~~G~--~l~a~~~~a 138 (300)
++|.+...-+++-+++.+.++..-..++|.| . ....|- +...+++-+
T Consensus 89 LqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~Nclssa 168 (309)
T COG5070 89 LQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSA 168 (309)
T ss_pred eeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHH
Confidence 9999999999999999999999999999888 1 112344 677777778
Q ss_pred HHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHHHHHHhcCCC-Cccc-ccCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 022226 139 LLYIVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAERNP-NSWR-LKPDTELIAIGCSAFFAVALRSLAHTWACH 214 (300)
Q Consensus 139 ~~~v~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~ 214 (300)
.+-...|+..+ ...+ ...+++..+.+.+.++.+..++|++. .+.. ..+.....++...|+.+-+++| .-.|.++
T Consensus 169 afVL~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy-~saWcvr 246 (309)
T COG5070 169 AFVLIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISY-CSAWCVR 246 (309)
T ss_pred HHHHHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhh-ccceeEe
Confidence 88776665433 2223 67889999999999999999887642 2111 1123446677788876666665 5678999
Q ss_pred hcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchh
Q 022226 215 KKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSE 268 (300)
Q Consensus 215 ~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~ 268 (300)
-.+++.-|++..+.-.-..+-|.+++||+.+...+....+=..+-.++...+++
T Consensus 247 VtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~ 300 (309)
T COG5070 247 VTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSK 300 (309)
T ss_pred ehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887766555555544433
No 50
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.08 E-value=7e-05 Score=66.56 Aligned_cols=136 Identities=16% Similarity=0.152 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAH 209 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~ 209 (300)
.+..++.|+......|...++..+...........+.+...+...... ...... ...+......+.+.....+.++
T Consensus 12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 87 (292)
T COG0697 12 LLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEP--RGLRPA--LRPWLLLLLLALLGLALPFLLL 87 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhc--cccccc--ccchHHHHHHHHHHHHHHHHHH
Confidence 666778888888877776665233244445466666655333322111 001111 1113455566677888999999
Q ss_pred HHHhhhcCCceeecchhhHHHHHHHHHH-HHhcCcccchhhhhHHHHhhhhhhhhccchhh
Q 022226 210 TWACHKKGPVYVSMYKPLGIVFAIIMGV-TLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 269 (300)
Q Consensus 210 ~~a~~~~~~~~~s~~~~l~Pi~a~i~~~-~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~ 269 (300)
+.++++.++..++.+.+..|++..+++. ++++|+++..++.|..+.+.|+.++.......
T Consensus 88 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 88 FLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 9999999999999999999999999997 77799999999999999999999988755443
No 51
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=2.7e-05 Score=67.92 Aligned_cols=239 Identities=12% Similarity=0.064 Sum_probs=149.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCC--CCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhh
Q 022226 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRT---RPP--LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLT 107 (300)
Q Consensus 33 ~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~---~~~--~~~~~~~~~~~~gl~g~~~~~~~~~al~~~~~~~a~~i~~l~ 107 (300)
.|...++.+.+....+ -..+.....+-.+ .|+ ++.+....+.-....-.++-.+-.+.++|.+.+.--+=-++.
T Consensus 60 ~plf~t~~qcLvt~~~-c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLt 138 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSI-CLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLT 138 (347)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchh
Confidence 4777777887776665 4444333222111 122 233332322222222122333345567777777766677788
Q ss_pred HHHHHHHHHHHhccC----------------------c-----cccchh--hhHHHHHHHHHHHHHHHHHhhcCc-hhHH
Q 022226 108 PAFTFILALISRGID----------------------C-----DFVQGA--STSGSFFLSLLYIVQTSIIREYPE-ELMA 157 (300)
Q Consensus 108 Pi~~~ila~~~l~e~----------------------~-----~~~~G~--~l~a~~~~a~~~v~~~~~~~~~~~-~~~~ 157 (300)
-+|+.++.++++|+| + -...|. +..|.++-|+..+..||.-....+ ....
T Consensus 139 tvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~l 218 (347)
T KOG1442|consen 139 TVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRL 218 (347)
T ss_pred hhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhh
Confidence 899999999999999 1 113666 888888888888877765433332 3678
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccc--cc-CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHH
Q 022226 158 TFICCVFVTIQSTVVALIAERNPNSWR--LK-PDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAII 234 (300)
Q Consensus 158 ~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i 234 (300)
+.+..+.+.++++|...+.++-...+. .. ....|..+...|+++-.++|.-. +=+|-.+|-.=.+-....-..=.+
T Consensus 219 t~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg-~QIK~TSplThnISgTAka~aQTv 297 (347)
T KOG1442|consen 219 TAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTG-WQIKVTSPLTHNISGTAKAAAQTV 297 (347)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheee-EEEEecccceeeecHhHHHHHHHH
Confidence 889999999999888776544221122 11 23346666666665544444221 234444444444444555566688
Q ss_pred HHHHHhcCcccchhhhhHHHHhhhhhhhhccchhhhhcc
Q 022226 235 MGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMI 273 (300)
Q Consensus 235 ~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~~~~~ 273 (300)
++..+++|..+..-+-|-+++++|-..+++-|+++.+|+
T Consensus 298 lAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 298 LAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred HHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 999999999999999999999999998887666665443
No 52
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.99 E-value=5.9e-05 Score=68.07 Aligned_cols=127 Identities=12% Similarity=0.068 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAH 209 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~ 209 (300)
.++++++|+...+..|+.. ..+. .+.. ...+++++...+......+. .+ ....+..-...|+ .=++++..|
T Consensus 6 ~lia~~~wGs~g~~~k~~~-g~~~-~~~~--~~~~g~l~~~~~~~~~~~~~--~~--~~~~~~~g~l~G~-~w~ig~~~~ 76 (290)
T TIGR00776 6 ALIPALFWGSFVLINVKIG-GGPY-SQTL--GTTFGALILSIAIAIFVLPE--FW--ALSIFLVGLLSGA-FWALGQINQ 76 (290)
T ss_pred HHHHHHHHhhhHHHHhccC-CCHH-HHHH--HHHHHHHHHHHHHHHHhCCc--cc--ccHHHHHHHHHHH-HHHhhhhhH
Confidence 6889999999999888765 3433 3333 34555555554444432211 11 1122222222222 356778999
Q ss_pred HHHhhhcCCceeecchh-hHHHHHHHHHHHHhcCcccchh----hhhHHHHhhhhhhhhcc
Q 022226 210 TWACHKKGPVYVSMYKP-LGIVFAIIMGVTLLGDTLYLGS----VVGATIVAFGFYSVIWG 265 (300)
Q Consensus 210 ~~a~~~~~~~~~s~~~~-l~Pi~a~i~~~~~l~E~~~~~~----~iG~~lil~Gv~l~~~~ 265 (300)
..++++.|.+.+-++.+ +.++++.+++.+++||+.+..+ ++|.++++.|+.++...
T Consensus 77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 99999999999999988 9999999999999999999999 99999999999887544
No 53
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.90 E-value=3.5e-05 Score=59.89 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceeecc-hhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccc
Q 022226 198 AFFAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 198 ~i~~t~~~~~l~~~a~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~ 266 (300)
.++..+++|+++..++++++.+.+=.+ .-+--+...+.|++++||++|+.+++|..+++.|+...+...
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 445667899999999999998876444 346777788999999999999999999999999999886543
No 54
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.88 E-value=0.00013 Score=64.38 Aligned_cols=136 Identities=13% Similarity=0.185 Sum_probs=104.6
Q ss_pred cchh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccc-ccCchhHHHHHHHHHHHH
Q 022226 126 VQGA--STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWR-LKPDTELIAIGCSAFFAV 202 (300)
Q Consensus 126 ~~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~i~~t 202 (300)
..|. .+.|-+.|+..... -|+.++.+. ..+..+..+++.+....+.....+...-++ ...+..+......++. -
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y-~kll~~~~~-~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLY-FKLLEPLPA-TEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-I 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHH-HHHHccCCH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-H
Confidence 3566 66666777766544 445566775 889999999998887777666544322222 2234556666666654 4
Q ss_pred HHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 203 ALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 203 ~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
...+.+|.|+.++-....+|.-.++.|++.++.|.++++|+++..|++..++...|+..-.+
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999886654
No 55
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.86 E-value=4.5e-05 Score=65.96 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhh
Q 022226 200 FAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYS 261 (300)
Q Consensus 200 ~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l 261 (300)
+...++..+-.+.+++.++...+....++++++.+++++++||+++..++.|+.+++.|+++
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 34566677788999999999999999999999999999999999999999999999999875
No 56
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.83 E-value=0.00042 Score=55.95 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----CC-----CHH
Q 022226 6 VTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP-----PL-----TVS 69 (300)
Q Consensus 6 ~~~~l~~~~~~w~~~~~~~K~~~~~------~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~-----~~-----~~~ 69 (300)
|....+.++++.+...+..|..+++ ..++..+..+-...+.++ ++|......+....+ .. +.+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 79 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFII-LLPLAFLLEGPQLSSFFSEIFGEELSSDPN 79 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHhhhhhhcchHH
Confidence 4567889999999999999998766 589999999999999999 998877654432100 00 224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCc
Q 022226 70 IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDC 123 (300)
Q Consensus 70 ~~~~~~~~gl~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~ 123 (300)
.+..+...|+++...+...+..++++++...++....-.+.+.++++++++|+.
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~ 133 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPI 133 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcC
Confidence 455666677777888889999999999999999999999999999999999993
No 57
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.76 E-value=0.00019 Score=59.77 Aligned_cols=184 Identities=16% Similarity=0.207 Sum_probs=119.6
Q ss_pred HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC--------------------------ccccchh--hhHH
Q 022226 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID--------------------------CDFVQGA--STSG 133 (300)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~--------------------------~~~~~G~--~l~a 133 (300)
.+.++.|..+++.++++.++.+..+.--|+.+++++++|+| .+...|. +..+
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~S 143 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGS 143 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHH
Confidence 67889999999999999999999999999999999999999 2335788 8889
Q ss_pred HHHHHHHHHHHHHHHhhcC--c-hhHHHHHHHH---HHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHH
Q 022226 134 SFFLSLLYIVQTSIIREYP--E-ELMATFICCV---FVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSL 207 (300)
Q Consensus 134 ~~~~a~~~v~~~~~~~~~~--~-~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~ 207 (300)
++.-++|-+.-|+.....+ + ...+....++ +-....++++ +++ -.+|+......|.++...+...... -+
T Consensus 144 A~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~-~T~--VE~~qsFA~~PWG~l~G~A~L~lAF-N~ 219 (290)
T KOG4314|consen 144 AFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILA-FTG--VEHLQSFAAAPWGCLCGAAGLSLAF-NF 219 (290)
T ss_pred HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHH-Hhc--hHHHHHHhhCCchhhhhHHHHHHHH-hh
Confidence 9999999998887654432 1 0111111111 1111111111 111 1233322223366665444433322 23
Q ss_pred HHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhh
Q 022226 208 AHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 269 (300)
Q Consensus 208 l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~ 269 (300)
+-+.++....|...|+-+.....--...+.++-+-..+.....|..++..|..+....+.++
T Consensus 220 ~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~~ 281 (290)
T KOG4314|consen 220 LINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDKD 281 (290)
T ss_pred heeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccchh
Confidence 44566777777777777666666666777765555678888899999999998887655443
No 58
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.73 E-value=0.025 Score=52.02 Aligned_cols=256 Identities=12% Similarity=0.068 Sum_probs=141.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHH--HHHHhhcCC--CCCCCHHHHHHHHHHH
Q 022226 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVY-SNAFAAIFILLPS--TFIYYRNRT--RPPLTVSIICKIFGLG 78 (300)
Q Consensus 4 ~~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~-R~~~a~l~~ll~~--~~~~~~~~~--~~~~~~~~~~~~~~~g 78 (300)
.-+++..++++++||+.++-.|.. ++ .+ ++.-+. -.+++.+ +.|. ..+.-+... ....+.+.+..-.+.|
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~-wE~~W~v~gi~~wl--~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKKV-KK-WS-WETMWSVGGIFSWL--ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred HHHHHHHHHHHHHhhccccccccc-CC-Cc-hhHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 457888899999999999999983 33 33 222211 0111111 1120 011111000 0123455556666677
Q ss_pred HHHHHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhccC----------------------------------c
Q 022226 79 LISCCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRGID----------------------------------C 123 (300)
Q Consensus 79 l~g~~~~~~~~~al~~~~~~~a~~i-~~l~Pi~~~ila~~~l~e~----------------------------------~ 123 (300)
.+-..++..++.++++...+.+--+ ..++-+...++..++++|- +
T Consensus 81 ~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~ 160 (345)
T PRK13499 81 ALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKER 160 (345)
T ss_pred HHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 7768899999999999988887755 3466667777777766653 0
Q ss_pred ----------cccchh--hhHHHHHHHHHH-------HHHHHH-HhhcCchhHH--HHHHHHHHHHHHHH-HHHH---hc
Q 022226 124 ----------DFVQGA--STSGSFFLSLLY-------IVQTSI-IREYPEELMA--TFICCVFVTIQSTV-VALI---AE 177 (300)
Q Consensus 124 ----------~~~~G~--~l~a~~~~a~~~-------v~~~~~-~~~~~~~~~~--~~~~~~~~~i~~~~-~~~~---~~ 177 (300)
+...|. ++++.+.++.|. ...+.. ..+.+++... ....++.++...-+ +... -+
T Consensus 161 ~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~ 240 (345)
T PRK13499 161 KMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKN 240 (345)
T ss_pred ccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 113555 888888888888 332221 1122221111 11222344443332 2221 11
Q ss_pred CCC---CcccccCchhHHHHH--HHHHHHHHHHHHHHHHHhhhcCCceeec---ch-hhHHHHHHHHHHHHhcCccc---
Q 022226 178 RNP---NSWRLKPDTELIAIG--CSAFFAVALRSLAHTWACHKKGPVYVSM---YK-PLGIVFAIIMGVTLLGDTLY--- 245 (300)
Q Consensus 178 ~~~---~~~~~~~~~~~~~l~--~~~i~~t~~~~~l~~~a~~~~~~~~~s~---~~-~l~Pi~a~i~~~~~l~E~~~--- 245 (300)
++. .+...+....+-..+ .++-+.=.+++..|..+-++.|...... +. -+.-+++.++|. +++|.=+
T Consensus 241 ~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~ 319 (345)
T PRK13499 241 KDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASR 319 (345)
T ss_pred CCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCc
Confidence 111 111111000022211 1122234466777777888886654443 33 666699999999 4999877
Q ss_pred ---chhhhhHHHHhhhhhhhhcc
Q 022226 246 ---LGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 246 ---~~~~iG~~lil~Gv~l~~~~ 265 (300)
...++|.++++.|..++...
T Consensus 320 k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 320 RPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cchhHHHHHHHHHHHHHHHHhhc
Confidence 56789999999998887654
No 59
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.72 E-value=0.00046 Score=62.62 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhcC-c--hhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022226 139 LLYIVQTSIIREYP-E--ELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHK 215 (300)
Q Consensus 139 ~~~v~~~~~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~ 215 (300)
.+.+.+.++.++.+ . +..+++.++.+..+...+.......+.. ....+.-....++ ...++..+-+.++++
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSF-LFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 34455666554422 2 4678889998888877766554431111 1111223333333 556677888999999
Q ss_pred cCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhhhhcc
Q 022226 216 KGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMI 273 (300)
Q Consensus 216 ~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~~~~~ 273 (300)
++...-.++....|+..+++++++++++.+..++.+..++..|+.+....+.+++++.
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~ 145 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS 145 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccccc
Confidence 9999999999999999999999999999999999999999999999887665554443
No 60
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.66 E-value=0.0028 Score=55.80 Aligned_cols=244 Identities=10% Similarity=0.076 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHhc---CC----ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CC--------C--HHHHHHHHHHHH
Q 022226 18 VGSSTLNKAAMNK---GT----SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP-PL--------T--VSIICKIFGLGL 79 (300)
Q Consensus 18 ~~~~~~~K~~~~~---~~----~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~-~~--------~--~~~~~~~~~~gl 79 (300)
+.+.+..|-+-+. |. +|...+..-|+.-.++ +..+..++.|....- .. + .-+-......++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflC-l~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal 94 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLC-LAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPAL 94 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHH
Confidence 3455666765321 22 3666666666666566 666666655532210 00 0 001123333566
Q ss_pred HHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC----------------------------------ccc
Q 022226 80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID----------------------------------CDF 125 (300)
Q Consensus 80 ~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~----------------------------------~~~ 125 (300)
+...+..++|.|+.+++++.-..+-...-+|+.+++.-+++.+ +.-
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~i 174 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSI 174 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccc
Confidence 6688888999999999999999999999999999999999887 122
Q ss_pred cchh--hhHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHh----cCCCCcccccCc---hhHH---
Q 022226 126 VQGA--STSGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIA----ERNPNSWRLKPD---TELI--- 192 (300)
Q Consensus 126 ~~G~--~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~---~~~~--- 192 (300)
..|+ .+++-+..++-.+.-.|..++.+ +|.....|.-++|.+.+..++..+ .++. ++..+. ..|.
T Consensus 175 itGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~s--fS~~~~g~~eD~~~~~ 252 (372)
T KOG3912|consen 175 ITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDS--FSCNPRGVLEDWGDAF 252 (372)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCc--CcCCCCcchhhHHHHH
Confidence 4788 88888888988877666544432 458899999988855444433322 1111 111000 0010
Q ss_pred H------HHHHHHHHHHHHHHHHHH----HhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhh
Q 022226 193 A------IGCSAFFAVALRSLAHTW----ACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 262 (300)
Q Consensus 193 ~------l~~~~i~~t~~~~~l~~~----a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~ 262 (300)
+ .+++++.+..++-..+|. --|..+++.=...-.+...+-=+++..+..|.+...++.|-++.+.|+.++
T Consensus 253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY 332 (372)
T ss_pred HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 122233333333333432 234445555555556666666677778888999999999999999999988
Q ss_pred hc
Q 022226 263 IW 264 (300)
Q Consensus 263 ~~ 264 (300)
+.
T Consensus 333 ~~ 334 (372)
T KOG3912|consen 333 NQ 334 (372)
T ss_pred HH
Confidence 63
No 61
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.61 E-value=0.00018 Score=55.20 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceeecc-hhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhcc
Q 022226 198 AFFAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 198 ~i~~t~~~~~l~~~a~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~ 265 (300)
.++..+++|+++..+++++|.+.+=.+ .-+--+.+.+.|++++||++|+.+++|..+++.|+...+..
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345667889999999999998875333 44566777999999999999999999999999999988653
No 62
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.60 E-value=0.0013 Score=59.62 Aligned_cols=188 Identities=15% Similarity=0.194 Sum_probs=107.8
Q ss_pred HHHHHHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC-------------------------ccc--c
Q 022226 75 FGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID-------------------------CDF--V 126 (300)
Q Consensus 75 ~~~gl~g-~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~-------------------------~~~--~ 126 (300)
.+.|+.. .++..+-+.|+.+.|++..+-+..+.-++..+++.+++||| ++. .
T Consensus 53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t 132 (300)
T PF05653_consen 53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHT 132 (300)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCC
Confidence 3455555 66777888999999999999999999999999999999999 000 0
Q ss_pred ----------chh----hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH-------HHHHHHhcCCCCcccc
Q 022226 127 ----------QGA----STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQS-------TVVALIAERNPNSWRL 185 (300)
Q Consensus 127 ----------~G~----~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~~ 185 (300)
.+. .+...+...+.....+|..++ +- ........++|+.-. ..+....+++ .++
T Consensus 133 ~~~l~~~~~~~~fl~y~~~~~~~~~~L~~~~~~r~g~~-~i-~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~-~~f-- 207 (300)
T PF05653_consen 133 LDELIALLSQPGFLVYFILVLVLILILIFFIKPRYGRR-NI-LVYISICSLIGSFTVLSAKAISILIKLTFSGD-NQF-- 207 (300)
T ss_pred HHHHHHHhcCcceehhHHHHHHHHHHHHHhhcchhccc-ce-EEEEEEeccccchhhhHHHHHHHHHHHHhcCc-hhh--
Confidence 111 111111112221122221111 10 111111111221110 0111111121 112
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHH-HHHHHHHHHHhcCcc--cc----hhhhhHHHHhhh
Q 022226 186 KPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGI-VFAIIMGVTLLGDTL--YL----GSVVGATIVAFG 258 (300)
Q Consensus 186 ~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~P-i~a~i~~~~~l~E~~--~~----~~~iG~~lil~G 258 (300)
.++..|..++.. +.+........|+++++.+++.+.++.+..= ..+++-|.++++|.- +. ....|...++.|
T Consensus 208 ~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~G 286 (300)
T PF05653_consen 208 TYPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIG 286 (300)
T ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 123345444333 4456677788889999999999998887654 455666888999853 44 346678888999
Q ss_pred hhhhhccchh
Q 022226 259 FYSVIWGQSE 268 (300)
Q Consensus 259 v~l~~~~~~~ 268 (300)
+++...+++.
T Consensus 287 V~lL~~~~~~ 296 (300)
T PF05653_consen 287 VFLLSSSKDK 296 (300)
T ss_pred hheeeccCch
Confidence 9988754443
No 63
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.45 E-value=0.00015 Score=63.11 Aligned_cols=134 Identities=12% Similarity=0.105 Sum_probs=85.0
Q ss_pred cchh-hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHH
Q 022226 126 VQGA-STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVAL 204 (300)
Q Consensus 126 ~~G~-~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~ 204 (300)
.+|. .+.-+..+....++.++..+..| .......+++-.....|...+..+. .+......-|+ +.=|+.+ ..
T Consensus 37 ~~gl~l~~vs~ff~~~~vv~t~~~e~~p--~e~a~~r~l~~mlit~pcliy~~~~--v~gp~g~R~~L--iLRg~mG-~t 109 (346)
T KOG4510|consen 37 NLGLLLLTVSYFFNSCMVVSTKVLENDP--MELASFRLLVRMLITYPCLIYYMQP--VIGPEGKRKWL--ILRGFMG-FT 109 (346)
T ss_pred ccCceehhhHHHHhhHHHhhhhhhccCh--hHhhhhhhhhehhhhheEEEEEeee--eecCCCcEEEE--Eeehhhh-hh
Confidence 3566 22222666666666666655433 3444444444333333333322111 11111111122 2223323 23
Q ss_pred HHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccc
Q 022226 205 RSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 205 ~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~ 266 (300)
+..+.++++++.+-+.+..+.+..|++++++++.+++|+.+.....|..+.+.|++++.+..
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 45566779999999999999999999999999999999999999999999999999988643
No 64
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.42 E-value=0.0017 Score=57.41 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecch-hhHHHHHHHHHHHHhcCcccchhhh----hHHHHhhhhhhhhc
Q 022226 190 ELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYK-PLGIVFAIIMGVTLLGDTLYLGSVV----GATIVAFGFYSVIW 264 (300)
Q Consensus 190 ~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~-~l~Pi~a~i~~~~~l~E~~~~~~~i----G~~lil~Gv~l~~~ 264 (300)
.++.-+..|+ .=.+++..++.++++.|.+++.++. -++.+.+.++++++|||.-+..+.+ +.++++.|+++..+
T Consensus 44 ~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 44 SFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 4555555555 4568899999999999999999998 5677778999999999988766543 67788899998887
Q ss_pred cchhhhhc
Q 022226 265 GQSEEEKM 272 (300)
Q Consensus 265 ~~~~~~~~ 272 (300)
++++++++
T Consensus 123 ~~~~~~~~ 130 (269)
T PF06800_consen 123 QDKKSDKS 130 (269)
T ss_pred cccccccc
Confidence 66665543
No 65
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.35 E-value=0.0028 Score=58.12 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchh
Q 022226 190 ELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSE 268 (300)
Q Consensus 190 ~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~ 268 (300)
.|+.-+.+++ .-+.+-++...|+++.+.+.+.++.....++++++++++++|++++.+++|..+.+.|+.++...+..
T Consensus 78 ~~w~y~lla~-~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 78 PWWKYFLLAL-LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 3444445565 56788999999999999999999999999999999999999999999999999999999988876543
No 66
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.0054 Score=53.90 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=125.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc-ChhhHhhhhhhhHHHH
Q 022226 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYS-SPTLSSAIVDLTPAFT 111 (300)
Q Consensus 33 ~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~al~~~-~~~~a~~i~~l~Pi~~ 111 (300)
+-..++|.+|++-+.- =++.. -+....+ ++.+.|++.....+ | +..+++-.+++++- +-..=-++-+-.++.+
T Consensus 32 sgNLITFaqFlFia~e-Glif~-skf~~~k-~kiplk~Y~i~V~m--F-F~vnv~NN~al~f~I~~PlHiIfRsgsll~n 105 (330)
T KOG1583|consen 32 SGNLITFAQFLFIATE-GLIFT-SKFFTVK-PKIPLKDYAITVAM--F-FIVNVTNNYALKFNIPMPLHIIFRSGSLLAN 105 (330)
T ss_pred CeeehHHHHHHHHHHh-ceeee-ccccccC-CCCchhhhheehhe--e-eeeeeeccceeeecccceEEEEEecCcHHHH
Confidence 3367788888876664 33322 1111111 44455444433322 2 23334445666653 4444445667788999
Q ss_pred HHHHHHHhccC-------------------------------------------ccccchh--hhHHHHHHHHHHHHHHH
Q 022226 112 FILALISRGID-------------------------------------------CDFVQGA--STSGSFFLSLLYIVQTS 146 (300)
Q Consensus 112 ~ila~~~l~e~-------------------------------------------~~~~~G~--~l~a~~~~a~~~v~~~~ 146 (300)
++++++++|+| ..|.+|. ...+-+.-|.-.+.+.+
T Consensus 106 M~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~ 185 (330)
T KOG1583|consen 106 MILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQET 185 (330)
T ss_pred HHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 1224666 22222222222233433
Q ss_pred HHhhcCc-hhHHHHHHHHHHHHHHHHHHHH--------hcCCC---CcccccCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 022226 147 IIREYPE-ELMATFICCVFVTIQSTVVALI--------AERNP---NSWRLKPDTELIAIGCSAFFAVALRSLAHTWACH 214 (300)
Q Consensus 147 ~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~--------~~~~~---~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~ 214 (300)
.-+++.. +-...++.=+.+.+.++...-= ...+. ......-+..|..++...+ ..-.+.-.-+..-.
T Consensus 186 ~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L-~Qy~CikgVy~L~t 264 (330)
T KOG1583|consen 186 TYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL-TQYFCIKGVYILTT 264 (330)
T ss_pred HHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH-HHHHHHHhhhhhhc
Confidence 3333321 2456667666655544432110 00000 0111111233444443322 22222223334456
Q ss_pred hcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 215 KKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 215 ~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
+..+-.++++..+.=.++.++|.+.++.+++++.++|.++++.|..+...
T Consensus 265 e~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 265 ETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred eecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999988764
No 67
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00069 Score=51.13 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCcee-ecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhcc
Q 022226 199 FFAVALRSLAHTWACHKKGPVYV-SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 199 i~~t~~~~~l~~~a~~~~~~~~~-s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~ 265 (300)
+++-.++|.+...++|++|.+.+ ++..-+-.+.+.+.|++++||+++...++|.++++.|+...+..
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 34557789999999999987764 44455556667889999999999999999999999999987653
No 68
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.25 E-value=0.00091 Score=50.78 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCcee-ecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 199 FFAVALRSLAHTWACHKKGPVYV-SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 199 i~~t~~~~~l~~~a~~~~~~~~~-s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
+++.+++|++...++|++|.+.+ +...-+-.+.+.+.|++++||++|+.+++|..+++.|+...+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 44667889999999999988764 4444466677789999999999999999999999999998754
No 69
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.15 E-value=0.0012 Score=50.45 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCcee-ecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 199 FFAVALRSLAHTWACHKKGPVYV-SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 199 i~~t~~~~~l~~~a~~~~~~~~~-s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
+....++|++...++|++|.+.+ +...-+--+.+.+.|++++||++|+.+++|.++++.|+...+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34567889999999999998764 344445566678899999999999999999999999998764
No 70
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.11 E-value=0.00091 Score=60.61 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=82.1
Q ss_pred cccchh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHH
Q 022226 124 DFVQGA--STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFA 201 (300)
Q Consensus 124 ~~~~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 201 (300)
++.+|. +++++++.+....++|+-..|.+. ...-.-.- ...+ +. ...|+ .|+..
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~~~--------~~~~--------l~---~~~W~----~G~~~ 59 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAGSG--------GRSY--------LR---RPLWW----IGLLL 59 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccch--------hhHH--------Hh---hHHHH----HHHHH
Confidence 456788 889999999999988875544332 00000000 0000 00 01121 22333
Q ss_pred HHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 202 VALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 202 t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
..++..+...++...|++.++++..+.-++..+++..++||+++..++.|+++++.|..++..
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 445566777888999999999999999999999999999999999999999999999876653
No 71
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.09 E-value=0.0075 Score=48.20 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAH 209 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~ 209 (300)
.+.+...-+.-...+.++.++..++...+.+.+..|.+.+..+....++. ++.......|+..+ -|+++ ++-....
T Consensus 6 a~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~lG-~~~V~~~ 81 (138)
T PF04657_consen 6 ALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLLG-VFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHHH-HHHHHHH
Confidence 45666777777778888888887568999999999999888887777653 22211112232222 34433 4445677
Q ss_pred HHHhhhcCCceeecch-hhHHHHHHHHHHH----HhcCcccchhhhhHHHHhhhhhh
Q 022226 210 TWACHKKGPVYVSMYK-PLGIVFAIIMGVT----LLGDTLYLGSVVGATIVAFGFYS 261 (300)
Q Consensus 210 ~~a~~~~~~~~~s~~~-~l~Pi~a~i~~~~----~l~E~~~~~~~iG~~lil~Gv~l 261 (300)
...++++|++.+.... .=+-+.+.+++.+ .-++++++..++|.++++.|+++
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 7889999998866554 4466677777775 34457899999999999999864
No 72
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.003 Score=55.33 Aligned_cols=140 Identities=13% Similarity=0.117 Sum_probs=90.8
Q ss_pred cchh-hhHHHHHH-HHHHHHHHHHHhhcCch-hHHHHHHHHHHHHHHHHHHHHhcCCCCccccc---CchhHHHHHHHHH
Q 022226 126 VQGA-STSGSFFL-SLLYIVQTSIIREYPEE-LMATFICCVFVTIQSTVVALIAERNPNSWRLK---PDTELIAIGCSAF 199 (300)
Q Consensus 126 ~~G~-~l~a~~~~-a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~i 199 (300)
..|. ++.++++. |.-.-++.+..+..+.+ ..+.++...+|.+.++.....+++-...|... +.......++.+.
T Consensus 189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~ 268 (367)
T KOG1582|consen 189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL 268 (367)
T ss_pred eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence 4777 55555443 33334555555554431 44566666667666655555454433333322 1112333333322
Q ss_pred HHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccc
Q 022226 200 FAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 200 ~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~ 266 (300)
.+.++...-...++--|+..++.+....-..++++|++++..+++.+..-|..+|+.|+++-.+.|
T Consensus 269 -~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 269 -AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred -HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 344555555567778899999999999999999999999999999999999999999999877655
No 73
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.91 E-value=0.0017 Score=48.18 Aligned_cols=57 Identities=23% Similarity=0.294 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCceeec-chhhHHHHHHHHHHHHhcCcccchhhhhHHHH
Q 022226 199 FFAVALRSLAHTWACHKKGPVYVSM-YKPLGIVFAIIMGVTLLGDTLYLGSVVGATIV 255 (300)
Q Consensus 199 i~~t~~~~~l~~~a~~~~~~~~~s~-~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~li 255 (300)
+...+++++++..++|+.+.+.+=+ ..-+..+...+.|.+++||++|..+++|..+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3466788999999999999998844 45588889999999999999999999999875
No 74
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.90 E-value=0.0049 Score=56.63 Aligned_cols=134 Identities=9% Similarity=0.055 Sum_probs=85.7
Q ss_pred cchh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHH--HHHHHHHHH-HHHHHhcCCC-CcccccCchhHHHHHHHHH
Q 022226 126 VQGA--STSGSFFLSLLYIVQTSIIREYPEELMATFIC--CVFVTIQST-VVALIAERNP-NSWRLKPDTELIAIGCSAF 199 (300)
Q Consensus 126 ~~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~--~~~~~i~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~~~i 199 (300)
.+|. .+++++||+.+.+-+|| .++.+ .+.. |- .++..++.. ..+.+..++. ......+...+......|+
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~ 81 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA 81 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence 4677 89999999999988887 55554 2333 32 112111111 1122212221 1222123334444444554
Q ss_pred HHHHHHHHHHHHHhhhcCCceeecch-hhHHHHHHHHHHHHhcCcc---c----chhhhhHHHHhhhhhhhhc
Q 022226 200 FAVALRSLAHTWACHKKGPVYVSMYK-PLGIVFAIIMGVTLLGDTL---Y----LGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 200 ~~t~~~~~l~~~a~~~~~~~~~s~~~-~l~Pi~a~i~~~~~l~E~~---~----~~~~iG~~lil~Gv~l~~~ 264 (300)
.=.++...+..+++++|.+..-++. -++-+.+.+++.+++||-. + ..-++|.++++.|+.+..+
T Consensus 82 -~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 82 -LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred -HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999977665 4778899999999999754 2 2367788899999999887
No 75
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.00032 Score=60.46 Aligned_cols=238 Identities=13% Similarity=0.071 Sum_probs=149.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022226 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (300)
Q Consensus 6 ~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~ 85 (300)
.++..++=++.||+.+.+.-.- |=.|.+-+.--.+.|.++ -+.++++ .+ |..+...+..-++.|.+-..+|
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALif-aiiv~~~-~~----p~~T~~~~iv~~isG~~Ws~GQ 73 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIF-AIIVFLF-VS----PELTLTIFIVGFISGAFWSFGQ 73 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHH-HHHHhee-ec----CccchhhHHHHHHhhhHhhhhh
Confidence 4567788899999988776543 335655555444444444 3333322 22 4456656666666677768899
Q ss_pred HHHHHhccccChhhHhhhhh-hhHHHHHHHHHHHhccC------------------------------------ccccch
Q 022226 86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRGID------------------------------------CDFVQG 128 (300)
Q Consensus 86 ~~~~~al~~~~~~~a~~i~~-l~Pi~~~ila~~~l~e~------------------------------------~~~~~G 128 (300)
..-+-|+++++.+.+--+.+ .+=+-+.+++.+.++|. ++...|
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkg 153 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKG 153 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhh
Confidence 99999999999999887755 55567778888888888 112355
Q ss_pred h--hhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHH
Q 022226 129 A--STSGSFFLSLLYIVQTSIIRE-YPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALR 205 (300)
Q Consensus 129 ~--~l~a~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~ 205 (300)
. .+.+.++|-.|.++.+...-+ .+. .--....+.++++.+. ..-+ +. ......|..++ -|+ .=+++
T Consensus 154 i~~L~iSt~GYv~yvvl~~~f~v~g~sa-iLPqAiGMv~~ali~~---~~~~-~~----~~~K~t~~nii-~G~-~Wa~G 222 (288)
T COG4975 154 IVILLISTLGYVGYVVLFQLFDVDGLSA-ILPQAIGMVIGALILG---FFKM-EK----RFNKYTWLNII-PGL-IWAIG 222 (288)
T ss_pred eeeeeeeccceeeeEeeeccccccchhh-hhHHHHHHHHHHHHHh---hccc-cc----chHHHHHHHHh-hHH-HHHhh
Confidence 5 667888888887766554321 111 2222334444443322 1111 10 01122333332 222 23456
Q ss_pred HHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhh----hhHHHHhhhhhhhh
Q 022226 206 SLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSV----VGATIVAFGFYSVI 263 (300)
Q Consensus 206 ~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~----iG~~lil~Gv~l~~ 263 (300)
-..+..+.++.|.+..=.+.-+--+.+.+-|+++++|+-|..++ +|.++++.|..+.-
T Consensus 223 Nl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 223 NLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 66777788899998888888888999999999999999887754 57777777765543
No 76
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.031 Score=50.25 Aligned_cols=229 Identities=12% Similarity=0.077 Sum_probs=130.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 022226 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS- 81 (300)
Q Consensus 3 ~~~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g- 81 (300)
+.++..+...+.+..|.+.++-|....+ ... ...| ..+ . +..-.+. +....|.+-
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~r----------------a~~-g-g~~yl~~--~~Ww~G~ltm 74 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGLR----------------AGE-G-GYGYLKE--PLWWAGMLTM 74 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hccc----------------ccC-C-Ccchhhh--HHHHHHHHHH
Confidence 4566666777777777777777776544 100 0111 011 1 1111112 344566665
Q ss_pred HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCccc------------------------------------
Q 022226 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDCDF------------------------------------ 125 (300)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~~------------------------------------ 125 (300)
.++...-|.|..+.+++..+-+..+.-+..++++..+++||-++
T Consensus 75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~ 154 (335)
T KOG2922|consen 75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELA 154 (335)
T ss_pred HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHh
Confidence 67777778888999999999999999999999999999999000
Q ss_pred -cchh-----hhHHHHHHHHHHHHHHHHHhhcC--chhHHHHHHHHHHHHH--H-----HHHHHHhcCCCCcccccCchh
Q 022226 126 -VQGA-----STSGSFFLSLLYIVQTSIIREYP--EELMATFICCVFVTIQ--S-----TVVALIAERNPNSWRLKPDTE 190 (300)
Q Consensus 126 -~~G~-----~l~a~~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~i~--~-----~~~~~~~~~~~~~~~~~~~~~ 190 (300)
..+. .++..++.=.+ ..+ +++. ..+.......+.|+.- . ..+-..+.+++ +. ..+..
T Consensus 155 ~~~~Fliy~~~iil~~~il~~--~~~---p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~-ql--~~~~t 226 (335)
T KOG2922|consen 155 TEPGFLVYVIIIILIVLILIF--FYA---PRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN-QL--FYPLT 226 (335)
T ss_pred cCccHHHHHHHHHHHHHHHhe--eec---ccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc-cc--ccHHH
Confidence 0111 11111111111 111 1111 1122222333332110 0 00111122222 22 22345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhH-HHHHHHHHHHHhcCcc--cc----hhhhhHHHHhhhhhhhh
Q 022226 191 LIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLG-IVFAIIMGVTLLGDTL--YL----GSVVGATIVAFGFYSVI 263 (300)
Q Consensus 191 ~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~-Pi~a~i~~~~~l~E~~--~~----~~~iG~~lil~Gv~l~~ 263 (300)
|..++.... +......-.++|++..++..++++.|.. ..++++-|.++++|.- +. ....|...++.|+.+..
T Consensus 227 y~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~ 305 (335)
T KOG2922|consen 227 WIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLH 305 (335)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEee
Confidence 666555543 5566677788999999999999887754 5667788999999953 33 25678899999999885
Q ss_pred c
Q 022226 264 W 264 (300)
Q Consensus 264 ~ 264 (300)
.
T Consensus 306 ~ 306 (335)
T KOG2922|consen 306 R 306 (335)
T ss_pred e
Confidence 3
No 77
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.55 E-value=0.0035 Score=55.14 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhh
Q 022226 202 VALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 269 (300)
Q Consensus 202 t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~ 269 (300)
..+.-.+.+.++++.+|+.-.+......+++.++++++++.+++..+|++..++..|+.++.......
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 34456677789999999999999999999999999999999999999999999999999988765544
No 78
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.54 E-value=0.028 Score=48.97 Aligned_cols=120 Identities=13% Similarity=0.074 Sum_probs=96.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 022226 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (300)
Q Consensus 5 ~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~ 83 (300)
.+..+.+....+|+..-+.+|.+-+. .+.-.-+..-+..|+++ .+|+-.-+... .-.+++....-+..|+++ .+
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAavi-v~Pig~~~ag~---~l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALI-VLPIGAAQAGP---ALFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHH-Hhhhhhhhcch---hhcChHHHHHHHHHHHHhccc
Confidence 45667788999999999999998754 56666677788999999 99987543332 234566666677788898 89
Q ss_pred HHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCccc--cchh
Q 022226 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDCDF--VQGA 129 (300)
Q Consensus 84 ~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~~--~~G~ 129 (300)
.+.+-..++++.+...-++++++.|.+.++.++++++|.... .+|.
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI 270 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAI 270 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999332 2555
No 79
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.52 E-value=0.032 Score=42.82 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=45.1
Q ss_pred HHHHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCcc--ccchh
Q 022226 77 LGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDCD--FVQGA 129 (300)
Q Consensus 77 ~gl~g-~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~--~~~G~ 129 (300)
.++++ ...+.++..++++.+.+.+-.+.++.|+++.+++++++|||-+ ...|.
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi 97 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGV 97 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34455 6788899999999999999999999999999999999999933 34566
No 80
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.041 Score=44.33 Aligned_cols=133 Identities=13% Similarity=0.141 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAH 209 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~ 209 (300)
.+++..+-..-.-++.++.+..++++......+.+|++.+..+.++.+..+ ++.......|+... -|+++..+ -..-
T Consensus 10 ~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~~~-GG~lGa~~-vt~s 86 (150)
T COG3238 10 AILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWAWI-GGLLGAIF-VTSS 86 (150)
T ss_pred HHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHHHH-ccchhhhh-hhhh
Confidence 566677777777778888888777788899999999999888888755433 22211211232221 22322222 2333
Q ss_pred HHHhhhcCCce-eecchhhHHHHHHHHHHHHhc----CcccchhhhhHHHHhhhhhhhhcc
Q 022226 210 TWACHKKGPVY-VSMYKPLGIVFAIIMGVTLLG----DTLYLGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 210 ~~a~~~~~~~~-~s~~~~l~Pi~a~i~~~~~l~----E~~~~~~~iG~~lil~Gv~l~~~~ 265 (300)
.....|+|++. +.....-+-+.+++++.+=+. .+++...++|.+++++|+++.+++
T Consensus 87 ~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 87 ILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 45667777665 344455566777777766333 468999999999999997665543
No 81
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.25 E-value=0.015 Score=44.53 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCceeecc-hhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhh
Q 022226 199 FFAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 262 (300)
Q Consensus 199 i~~t~~~~~l~~~a~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~ 262 (300)
...+..+-..|++.+.+.+-+.+.++ +.+.=+++.+.++++.+|..+...++|+++++.|+.+.
T Consensus 48 f~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 48 FLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 33455667788999999999999999 58999999999988888888989999999999998764
No 82
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.21 E-value=0.091 Score=41.46 Aligned_cols=109 Identities=14% Similarity=0.038 Sum_probs=76.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 022226 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (300)
Q Consensus 5 ~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~ 83 (300)
+++++++.+.++-+...++.|.++++ .+....... .+..+. .. . . | ......|++. .+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~--~~~~~~---~~-----~--~-p-------~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD--FIAALL---AF-----G--L-A-------LRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH--HHHHHH---HH-----h--c-c-------HHHHHHHHHHHHH
Confidence 57888889999999999999999876 544332221 111111 00 1 1 1 2345677777 88
Q ss_pred HHHHHHHhccccChhhHhhhhhhhHHHHHHHHHH--HhccCcc--ccchh-hhHHH
Q 022226 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALI--SRGIDCD--FVQGA-STSGS 134 (300)
Q Consensus 84 ~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~--~l~e~~~--~~~G~-~l~a~ 134 (300)
.+.+|.+++++.+++.+..+.+..+.++.+.++. ++||+-+ ...|. .++++
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~G 116 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLG 116 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999888888885 7999933 34666 43333
No 83
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.32 E-value=0.0069 Score=52.40 Aligned_cols=128 Identities=11% Similarity=0.053 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAH 209 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~ 209 (300)
+++=++.|...-....|...+ | .+-+.. ..+|++...+..+++ .++ .. +...++.-+..|. .=.+++..+
T Consensus 7 aL~P~l~WGsip~v~~k~GG~-p--~qQ~lG-tT~GALifaiiv~~~-~~p-~~---T~~~~iv~~isG~-~Ws~GQ~~Q 76 (288)
T COG4975 7 ALLPALGWGSIPLVANKFGGK-P--YQQTLG-TTLGALIFAIIVFLF-VSP-EL---TLTIFIVGFISGA-FWSFGQANQ 76 (288)
T ss_pred HHHHHHHhcccceeeeecCCC-h--hHhhhh-ccHHHHHHHHHHhee-ecC-cc---chhhHHHHHHhhh-Hhhhhhhhh
Confidence 566677888776665554332 2 333322 233444333333333 121 11 1122333333333 335788899
Q ss_pred HHHhhhcCCceeecchh-hHHHHHHHHHHHHhcCcccchhh-h---hHHHHhhhhhhhhccch
Q 022226 210 TWACHKKGPVYVSMYKP-LGIVFAIIMGVTLLGDTLYLGSV-V---GATIVAFGFYSVIWGQS 267 (300)
Q Consensus 210 ~~a~~~~~~~~~s~~~~-l~Pi~a~i~~~~~l~E~~~~~~~-i---G~~lil~Gv~l~~~~~~ 267 (300)
.++++..|.+++.++.. .+.+-+.++|++.++|..+..++ + ..++++.|+++..++++
T Consensus 77 fka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 77 FKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 99999999999999865 67788899999999999877754 3 45778899988775444
No 84
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.0086 Score=53.76 Aligned_cols=125 Identities=15% Similarity=0.238 Sum_probs=83.5
Q ss_pred ccccchh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHH
Q 022226 123 CDFVQGA--STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFF 200 (300)
Q Consensus 123 ~~~~~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 200 (300)
+++..|. .+.+.+..+...++.||-.+|... .. .-.+..+..+. -...| +.|++
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~~--------------~ra~~gg~~yl--~~~~W----w~G~l 72 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----SG--------------LRAGEGGYGYL--KEPLW----WAGML 72 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhh----hc--------------ccccCCCcchh--hhHHH----HHHHH
Confidence 4566777 777777777777777765444211 00 00001111111 11123 33455
Q ss_pred HHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhhhh
Q 022226 201 AVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEK 271 (300)
Q Consensus 201 ~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~~~ 271 (300)
..++|-..-+.++...+++-++++..+.-+.+.+++..+++|+++....+|+++.+.|-++...-..++++
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence 55666666667777789999999999999999999999999999999999999999887766543333333
No 85
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.66 E-value=0.017 Score=52.44 Aligned_cols=123 Identities=14% Similarity=0.159 Sum_probs=89.1
Q ss_pred HHHHHHHh--hcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 022226 142 IVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPV 219 (300)
Q Consensus 142 v~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~ 219 (300)
+.+|++.+ +.+-|...+...+..+.+.....-. ....+ .-+..+...|..++-+|+ ...++..+-+.++++.+.+
T Consensus 34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~-l~~~~-~~~~~~~~~~~~llpl~~-~~~~~~v~~n~Sl~~v~Vs 110 (316)
T KOG1441|consen 34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKV-LKLVP-PSKISSKLPLRTLLPLGL-VFCISHVLGNVSLSYVPVS 110 (316)
T ss_pred EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHH-hcCCC-CCccccccchHHHHHHHH-HHHHHHHhcchhhhccchh
Confidence 34566666 5555677777766666655554433 22221 111113345777777776 4567788889999999999
Q ss_pred eeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccch
Q 022226 220 YVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 267 (300)
Q Consensus 220 ~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~ 267 (300)
.+-+.-.++|+++.++++++.+|+.+.........++.|+.+....+.
T Consensus 111 F~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~ 158 (316)
T KOG1441|consen 111 FYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL 158 (316)
T ss_pred HHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc
Confidence 999999999999999999999999999888888888888877766544
No 86
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.03 E-value=0.042 Score=50.43 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhh
Q 022226 204 LRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 269 (300)
Q Consensus 204 ~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~ 269 (300)
++.+.++.++.+...+...++....-.|+..++.++.+|++++...++..+-++|+++++..++++
T Consensus 171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 456788889999999999999999999999999999999999999999999999999999876665
No 87
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.12 E-value=0.059 Score=45.20 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=60.1
Q ss_pred HHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhhh
Q 022226 205 RSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEE 270 (300)
Q Consensus 205 ~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~~ 270 (300)
+-++|..+++++.++.++.+..-.-.|..+++++.+++++....++..++.+.|++...+.++..+
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a 131 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA 131 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence 356889999999999999999999999999999999999999999999999999998887665544
No 88
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=92.99 E-value=0.31 Score=44.58 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 204 LRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 204 ~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
+.-.+++.+..+.+|+.-.+...+....+.+++.++++++++..+|....+...|+.+++
T Consensus 104 lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 104 LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 344578889999999999999999999999999999999999999999999999999988
No 89
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.85 E-value=0.46 Score=41.10 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHhh-cC--c--------hhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHH
Q 022226 135 FFLSLLYIVQTSIIRE-YP--E--------ELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVA 203 (300)
Q Consensus 135 ~~~a~~~v~~~~~~~~-~~--~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~t~ 203 (300)
+||=.|.+.+.|+.+. +. + .+.+.+.+|....+..=++..+... ...+ ....|..... + .+..
T Consensus 23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~--~~~D--~t~~~~YaAc-s-~sYL 96 (337)
T KOG1580|consen 23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK--TEID--NTPTKMYAAC-S-ASYL 96 (337)
T ss_pred heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc--cccc--CCcchHHHHH-H-HHHH
Confidence 4666777888777542 32 1 2445667777776655433332221 1111 1223333321 1 2556
Q ss_pred HHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhhhh
Q 022226 204 LRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEK 271 (300)
Q Consensus 204 ~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~~~ 271 (300)
+++..-+.|++..+=-..-.--...|+=.+++|+++.+...++.......+|+.|+.+..++++|..-
T Consensus 97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g 164 (337)
T KOG1580|consen 97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG 164 (337)
T ss_pred HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence 67777788888877555555566788889999999999999999999999999999999987665543
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=89.91 E-value=1.1 Score=34.49 Aligned_cols=97 Identities=13% Similarity=0.052 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 022226 11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLY 89 (300)
Q Consensus 11 ~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~~~~~~ 89 (300)
+++.++||.+.++.|.+... .++..-.. | ...-.. .+. + ++ +. ..++.. -.+...|+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~-~~~~~~-~Ll------~-------n~----~y-~ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-Q-LLQEIK-FLL------L-------NP----KY-IIPFLLNQSGSVLFF 59 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-H-HHHHHH-HHH------H-------hH----HH-HHHHHHHHHHHHHHH
Confidence 46789999999999999765 44443332 4 222222 110 1 11 11 223333 57777889
Q ss_pred HhccccChhhHhhhh-hhhHHHHHHHHHHHhccC--ccccchh
Q 022226 90 VGIGYSSPTLSSAIV-DLTPAFTFILALISRGID--CDFVQGA 129 (300)
Q Consensus 90 ~al~~~~~~~a~~i~-~l~Pi~~~ila~~~l~e~--~~~~~G~ 129 (300)
+.+...+.+.+.-+. +++=++|.+.++++.+|. .+...|.
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~ 102 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGM 102 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHH
Confidence 999999999999885 677788888887765555 2234666
No 91
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=86.75 E-value=4.1 Score=35.98 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCC-CcccccCch-----hHHHHHHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP-NSWRLKPDT-----ELIAIGCSAFFAVA 203 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~-----~~~~l~~~~i~~t~ 203 (300)
+++|+++|+...+=.||.... ++ +....+.+....+...++..+.+.+. ..|...... ....+-..=.++-+
T Consensus 5 ~~va~~~fGs~~vPvK~~~~g-Dg-~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~iGLg 82 (254)
T PF07857_consen 5 CIVAVLFFGSNFVPVKKFDTG-DG-FFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKTIGLG 82 (254)
T ss_pred HHHHHHHhcccceeeEeccCC-Cc-HHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhhhhhH
Confidence 577888888887766765433 33 66666666555554444444433221 111111100 01112222223445
Q ss_pred HHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHH-HhcCcc-----cchhhhhHHHHhhhhhhhhccc
Q 022226 204 LRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVT-LLGDTL-----YLGSVVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 204 ~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~-~l~E~~-----~~~~~iG~~lil~Gv~l~~~~~ 266 (300)
+++.+|. ...-+.+-..|.+ ++|++. .....+|.++++.|..+...-|
T Consensus 83 lg~liW~---------------s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 83 LGMLIWG---------------SVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred HHHHHHH---------------HHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence 5666665 1233444444433 454432 4568899999998888776544
No 92
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.67 E-value=10 Score=34.37 Aligned_cols=139 Identities=13% Similarity=-0.001 Sum_probs=93.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCC-CCCHHHHHHHHHH
Q 022226 4 VGVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRN----RTRP-PLTVSIICKIFGL 77 (300)
Q Consensus 4 ~~~~~~l~~~~~~w~~~~~~~K~~~~~-~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~----~~~~-~~~~~~~~~~~~~ 77 (300)
..++.+++..++.-+......|...+. +.+-+.++++-.+++.+. +....++.... ...+ ..+..-+..+.+.
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~-l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS 234 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP-LLILSFITGELDALSLNFDNWSDSSVLVVMLLS 234 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH-HHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence 456888888889889999999998766 578889999999998887 66655443321 0001 1122335667777
Q ss_pred HHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCccccchh--hhHHHHHHHHHHHHH
Q 022226 78 GLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDCDFVQGA--STSGSFFLSLLYIVQ 144 (300)
Q Consensus 78 gl~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~~~~G~--~l~a~~~~a~~~v~~ 144 (300)
|++|++-.++-++..+..++..-++.. .-=.+..-++.+++++++....|. .+++.++-..|....
T Consensus 235 cv~gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 235 CVMGFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred HHHHHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 888877777778888888888777777 444555566666666664444555 555555555565443
No 93
>PRK02237 hypothetical protein; Provisional
Probab=85.15 E-value=2.8 Score=31.71 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=39.6
Q ss_pred ecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccch
Q 022226 222 SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 267 (300)
Q Consensus 222 s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~ 267 (300)
+.+.-...+.++++++..-|++|+.+.++|.++.+.|+.++...++
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 4556677888999999999999999999999999999988766543
No 94
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=84.63 E-value=6.6 Score=28.83 Aligned_cols=42 Identities=7% Similarity=-0.062 Sum_probs=26.7
Q ss_pred HHHHHHHHHhccccChhhH-hhhhhhhHHHHHHHHHHHhccCc
Q 022226 82 CCVQTCLYVGIGYSSPTLS-SAIVDLTPAFTFILALISRGIDC 123 (300)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a-~~i~~l~Pi~~~ila~~~l~e~~ 123 (300)
....+++..++++.+.+.+ ++...+..+.+.+.+.++++|+-
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~ 82 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESL 82 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5777899999999999998 45567999999999999999993
No 95
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=84.48 E-value=18 Score=28.74 Aligned_cols=106 Identities=14% Similarity=0.070 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 022226 8 AVMVAVECLEVGSSTLNKAAMNKGT-SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT 86 (300)
Q Consensus 8 ~~l~~~~~~w~~~~~~~K~~~~~~~-~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~ 86 (300)
+..+.+..+-+....+.-...+. . +|+.-++.-+..+.+. +..+....+++.. +..+ +.-++...-|++|.....
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~-~~i~~~~~~~~~~-~~~~-~~p~w~~lGG~lG~~~V~ 79 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFIL-LLIILLITGRPSL-ASLS-SVPWWAYLGGLLGVFFVL 79 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHH-HHHHHHHhccccc-chhc-cCChHHhccHHHHHHHHH
Confidence 34445555555555555444444 4 4999999999999998 7776666554311 2111 112455557888888888
Q ss_pred HHHHhccccChhhHhhhhh-hhHHHHHHHHHH
Q 022226 87 CLYVGIGYSSPTLSSAIVD-LTPAFTFILALI 117 (300)
Q Consensus 87 ~~~~al~~~~~~~a~~i~~-l~Pi~~~ila~~ 117 (300)
+..+.+...+++.+..+.- -+-+...+++.+
T Consensus 80 ~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~f 111 (138)
T PF04657_consen 80 SNIILVPRLGAALTTILIVAGQLIASLLIDHF 111 (138)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888999999888886654 455677777775
No 96
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=83.02 E-value=3.1 Score=31.37 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhhcCCceeecchh-hHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 204 LRSLAHTWACHKKGPVYVSMYKP-LGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 204 ~~~~l~~~a~~~~~~~~~s~~~~-l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
-+-.+|+..+.+.+-+.+.++.+ +.-.++.++|..+..|...-..+.|..+++.|+.+..
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 34567888899999999888765 5677888999976666677889999999999998753
No 97
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=82.65 E-value=6.9 Score=35.92 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=75.0
Q ss_pred chh--hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH-HHHhcCCCC-cccccCchhHHHHHHHHHHHH
Q 022226 127 QGA--STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVV-ALIAERNPN-SWRLKPDTELIAIGCSAFFAV 202 (300)
Q Consensus 127 ~G~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~t 202 (300)
+|. ..+++++.+.+++=.||. |+.+- .+.=..+.+++-++.-.+ +++.-++.. -....+...+......|+ -=
T Consensus 7 ~Gii~h~iGg~~~~sfy~P~kkv-k~WsW-Es~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~-lW 83 (344)
T PF06379_consen 7 LGIIFHAIGGFASGSFYVPFKKV-KGWSW-ESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV-LW 83 (344)
T ss_pred HHHHHHHHHHHHhhhhccchhhc-CCccH-HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH-HH
Confidence 566 677778878777666664 55543 333334555554443322 222222221 111112234444444444 34
Q ss_pred HHHHHHHHHHhhhcCCcee-ecchhhHHHHHHHHHHHHhcC-------cccchhhhhHHHHhhhhhhhhcc
Q 022226 203 ALRSLAHTWACHKKGPVYV-SMYKPLGIVFAIIMGVTLLGD-------TLYLGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 203 ~~~~~l~~~a~~~~~~~~~-s~~~~l~Pi~a~i~~~~~l~E-------~~~~~~~iG~~lil~Gv~l~~~~ 265 (300)
+++-..|-.++|++|.+-. ++..=+.-+++.++.-++.|+ +-....++|.++.+.|+.+.-+.
T Consensus 84 GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 84 GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 5677788899999997653 333334444555554444332 22346788999999999988764
No 98
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=81.73 E-value=2 Score=32.43 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=39.3
Q ss_pred ecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccch
Q 022226 222 SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 267 (300)
Q Consensus 222 s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~ 267 (300)
+.+.-...+.++++++..-+++|+.+.++|..+.+.|+.++...++
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 3455567788999999999999999999999999999998876554
No 99
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=80.65 E-value=40 Score=30.54 Aligned_cols=135 Identities=14% Similarity=0.101 Sum_probs=92.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHH
Q 022226 5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR----PPLTVSIICKIFGLGL 79 (300)
Q Consensus 5 ~~~~~l~~~~~~w~~~~~~~K~~~~~-~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~----~~~~~~~~~~~~~~gl 79 (300)
.++.++....+.=|++...=+....+ +++++.+++.-.++.++. -..- .+.....+. -+.|.+-+.-+++...
T Consensus 172 ~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~-~~~~-li~qg~~~~av~F~~~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 172 IGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAIL-NGTY-LILQGHLLPAVSFIKEHPDVAFDILLYST 249 (327)
T ss_pred HhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHH-HHHh-hhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence 45555555555555554444444333 689999988888887765 3332 221121110 1345666778888899
Q ss_pred HHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC--ccccchh-hhHHHHHHHHHH
Q 022226 80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID--CDFVQGA-STSGSFFLSLLY 141 (300)
Q Consensus 80 ~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~--~~~~~G~-~l~a~~~~a~~~ 141 (300)
+|+.+|.+-|+-++.-++-.-+.|+-+-=+++.+++.+.++.+ ..+..|. ...+++.+-.+.
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~ 314 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILL 314 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHH
Confidence 9999999999999998888888889999999999999999888 3444777 777777777664
No 100
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=80.37 E-value=6.5 Score=35.55 Aligned_cols=122 Identities=14% Similarity=0.165 Sum_probs=81.1
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCC-CC-cccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee
Q 022226 144 QTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PN-SWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYV 221 (300)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~ 221 (300)
++...++++-|+.++.+...+=..+....-...+.. +. .....+....-.+.-.++ +++.--.+-++++++.+.+.-
T Consensus 35 ~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtlSlY 113 (349)
T KOG1443|consen 35 FKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTLSLY 113 (349)
T ss_pred hhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeeeeee
Confidence 455556666566666665544433333322222221 11 000001111222333443 677778889999999999999
Q ss_pred ecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccc
Q 022226 222 SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 222 s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~ 266 (300)
.+.-.-.++|-.++|.++-=|++++.-..-..+|-+|+.+.+++.
T Consensus 114 TM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 114 TMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred eeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 999999999999999999999999999988889999999887754
No 101
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=80.13 E-value=1.6 Score=32.85 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=27.6
Q ss_pred HHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 233 IIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 233 ~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
..+++++++|++++....|..+++++++.+.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 5678999999999999999999999988653
No 102
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.28 E-value=3.5 Score=36.65 Aligned_cols=113 Identities=13% Similarity=0.156 Sum_probs=75.7
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccccc----CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecch
Q 022226 150 EYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLK----PDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYK 225 (300)
Q Consensus 150 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~ 225 (300)
+.+.|..++.++|++...+..........-+..++.+ +.....-++=+.+ .-...-..-+..+++.|.+.--+-.
T Consensus 57 ~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsv-Vfi~mI~fnnlcL~yVgVaFYyvgR 135 (347)
T KOG1442|consen 57 ILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSV-VFILMISFNNLCLKYVGVAFYYVGR 135 (347)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhh-eeeeehhccceehhhcceEEEEecc
Confidence 4455688999999998877666655432211111111 1111111111111 1112233456889999999999999
Q ss_pred hhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 226 PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 226 ~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
.+..+|++++++++++++-+.....+|.+|+.|..+=.
T Consensus 136 sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 136 SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred chhhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence 99999999999999999999999999999999987633
No 103
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.15 E-value=3.8 Score=30.38 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=28.8
Q ss_pred HHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 233 IIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 233 ~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
..++.++++|++.+..+.|..++++|++++-+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 56799999999999999999999999998653
No 104
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=78.83 E-value=69 Score=31.46 Aligned_cols=70 Identities=6% Similarity=-0.147 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcee--------ecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhh
Q 022226 193 AIGCSAFFAVALRSLAHTWACHKKGPVYV--------SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 262 (300)
Q Consensus 193 ~l~~~~i~~t~~~~~l~~~a~~~~~~~~~--------s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~ 262 (300)
.++..|..............++..+.... ....-..|+-+.++|.+.-.-..+....++++.++.+..+.
T Consensus 313 ~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 313 ALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 33444443333333333445555554432 23333456667777775433333333334444343443333
No 105
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=71.77 E-value=68 Score=27.93 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--hcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCHHHHHHHHHHHHHH
Q 022226 7 TAVMVAVECLEVGSSTLNKAAM--NKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR---PPLTVSIICKIFGLGLIS 81 (300)
Q Consensus 7 ~~~l~~~~~~w~~~~~~~K~~~--~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~---~~~~~~~~~~~~~~gl~g 81 (300)
+++|..-++--+..-...|.-. ++ .-....+++..+++..+ ++.+.++....... ...+...+.+.++.|+..
T Consensus 157 Y~Wm~~NclssaafVL~mrkri~ltN-f~d~dtmfYnNllslPi-L~~~s~~~edws~~n~annl~~d~l~am~ISgl~s 234 (309)
T COG5070 157 YLWMFTNCLSSAAFVLIMRKRIKLTN-FKDFDTMFYNNLLSLPI-LLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS 234 (309)
T ss_pred eEEEehhhHhHHHHHHHHHHhhcccc-cchhhHHHHhhhHHHHH-HHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence 4445444444444444445443 33 56778889999999988 87776654332110 123444567888888887
Q ss_pred HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccCccccchh-hhHHHHHHHHHHHH
Q 022226 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGIDCDFVQGA-STSGSFFLSLLYIV 143 (300)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~~~~G~-~l~a~~~~a~~~v~ 143 (300)
.+-.++--+.++-++...-+....+.-.-..+-+.+++.|..+...=. .+++-++.++|.+.
T Consensus 235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 666666667778888888888877777777888888888875441111 55566666666654
No 106
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=69.97 E-value=4.8 Score=35.96 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhcc
Q 022226 203 ALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 203 ~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~ 265 (300)
..+-.+.+.++....++...+..-...+|..+++.-++|.+++..+|.|...+..|+..+-..
T Consensus 97 i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 97 IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 344455566777777777777777889999999999999999999999999999999887654
No 107
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=65.47 E-value=7.5 Score=35.09 Aligned_cols=131 Identities=8% Similarity=-0.061 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH-HHHhcCC-------C---CcccccCchhHHHHHHHH
Q 022226 130 STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVV-ALIAERN-------P---NSWRLKPDTELIAIGCSA 198 (300)
Q Consensus 130 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~-------~---~~~~~~~~~~~~~l~~~~ 198 (300)
++++.+||+.+-..+|-..++... .+.+.|=..++.++..++ ++-.+.- + .+..-.+...+...+.-|
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 357789999998877766554322 122333232332222222 2221110 1 011111112233333334
Q ss_pred HHHHHHHHHHHHHHhhhcCCceeecchh-hHHHHHHHHHHHHhcCccc--chhhhhHHHHhhhhhhhh
Q 022226 199 FFAVALRSLAHTWACHKKGPVYVSMYKP-LGIVFAIIMGVTLLGDTLY--LGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 199 i~~t~~~~~l~~~a~~~~~~~~~s~~~~-l~Pi~a~i~~~~~l~E~~~--~~~~iG~~lil~Gv~l~~ 263 (300)
+ .--++-.+..+++...|.+.+-++.. +.-+.+.+.-|+ ++.+.+ ..-+.|.+++++++++-.
T Consensus 80 v-vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 80 V-VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred H-hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence 3 33456667777888888777655542 222234444443 456554 245667777777776543
No 108
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=64.84 E-value=1.2e+02 Score=28.04 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHhccCccccchh-hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 022226 106 LTPAFTFILALISRGIDCDFVQGA-STSGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWR 184 (300)
Q Consensus 106 l~Pi~~~ila~~~l~e~~~~~~G~-~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 184 (300)
..|+...+++++++++.++...|. .+.-+=|-|...+.+.-...|.+.....+.+.+++..+...+++.+.-+.. +.+
T Consensus 93 i~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~v~-~~~ 171 (342)
T COG0798 93 IGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGKFFLGVI-SIS 171 (342)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccc
Confidence 479999999999998777788888 666666666666654433233222245566677777666666666543321 122
Q ss_pred ccCchhHHH-HHHHHHHHHHHHHHHHHHHhhhcCCc--------eeecchhhHHHHHHHHHHHHhcCcc
Q 022226 185 LKPDTELIA-IGCSAFFAVALRSLAHTWACHKKGPV--------YVSMYKPLGIVFAIIMGVTLLGDTL 244 (300)
Q Consensus 185 ~~~~~~~~~-l~~~~i~~t~~~~~l~~~a~~~~~~~--------~~s~~~~l~Pi~a~i~~~~~l~E~~ 244 (300)
.+...-..+ ++|+++ .-..|...-....|+.|.. ..++++.+--.++++.=..+=||.+
T Consensus 172 v~~~~i~~Sv~lyl~i-Pli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~I 239 (342)
T COG0798 172 VPFWTIAKSVLLYLGI-PLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQI 239 (342)
T ss_pred ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHH
Confidence 222122333 445554 7788888888899888874 4555555555555555444445543
No 109
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=63.59 E-value=1.1e+02 Score=28.28 Aligned_cols=9 Identities=11% Similarity=0.427 Sum_probs=3.8
Q ss_pred hhhhhhhcc
Q 022226 257 FGFYSVIWG 265 (300)
Q Consensus 257 ~Gv~l~~~~ 265 (300)
.|..+...+
T Consensus 140 ~~~~l~~~~ 148 (385)
T PF03547_consen 140 LGYFLLESR 148 (385)
T ss_pred HHHHhhccc
Confidence 444444433
No 110
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=63.28 E-value=61 Score=24.56 Aligned_cols=48 Identities=8% Similarity=-0.018 Sum_probs=37.8
Q ss_pred HHHHHHHHHhccccChhhHh-hhhhhhHHHHHHHHHHHhccCccc--cchh
Q 022226 82 CCVQTCLYVGIGYSSPTLSS-AIVDLTPAFTFILALISRGIDCDF--VQGA 129 (300)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~-~i~~l~Pi~~~ila~~~l~e~~~~--~~G~ 129 (300)
...+++.-.++++++.+.|= +-...--+.+.+.++++++|+-+. ..|.
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl 91 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGL 91 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 57788889999999988774 446688889999999999999433 3455
No 111
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=62.99 E-value=6.4 Score=31.44 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=16.2
Q ss_pred CCceeecchhhHHHHHHHHHHHH
Q 022226 217 GPVYVSMYKPLGIVFAIIMGVTL 239 (300)
Q Consensus 217 ~~~~~s~~~~l~Pi~a~i~~~~~ 239 (300)
+.-+.+.+.|+.|.++++.+.++
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667788888888777654
No 112
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=61.50 E-value=70 Score=24.31 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHHHH-HHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhccCccc--cchh
Q 022226 77 LGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRGIDCDF--VQGA 129 (300)
Q Consensus 77 ~gl~g-~~~~~~~~~al~~~~~~~a~~i-~~l~Pi~~~ila~~~l~e~~~~--~~G~ 129 (300)
..+.+ .+.+.++..++++.+.+.+=.+ ..+.-+.+.++++++++|+.++ ..|.
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi 91 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGM 91 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 33444 6778888999999998888666 5578888999999999999554 3455
No 113
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=61.01 E-value=6.7 Score=33.48 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=28.4
Q ss_pred ceeecchhhHHHHHHHHHHHHhcCccc-chhhhh-HHHHhhhhhhhh
Q 022226 219 VYVSMYKPLGIVFAIIMGVTLLGDTLY-LGSVVG-ATIVAFGFYSVI 263 (300)
Q Consensus 219 ~~~s~~~~l~Pi~a~i~~~~~l~E~~~-~~~~iG-~~lil~Gv~l~~ 263 (300)
...+.+..+.|..+..+|..+-+-... ..+++| .+|+..|+....
T Consensus 34 l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 34 LIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 345555667788888888875543333 345555 555668888765
No 114
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=61.00 E-value=3.5 Score=32.54 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=25.5
Q ss_pred ceeecchhhHHHHHHHHHHHHhcCcc--cchhhhhHHHHhhhhhhhh
Q 022226 219 VYVSMYKPLGIVFAIIMGVTLLGDTL--YLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 219 ~~~s~~~~l~Pi~a~i~~~~~l~E~~--~~~~~iG~~lil~Gv~l~~ 263 (300)
.+.+.+.|+.|+.+++.+.++..--. ++..++++.+.+..-++..
T Consensus 68 ~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~ 114 (135)
T PF04246_consen 68 LKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLIL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888776443311 4555555544443333333
No 115
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=58.35 E-value=63 Score=27.42 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC
Q 022226 78 GLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID 122 (300)
Q Consensus 78 gl~g~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~ 122 (300)
.+.....+.+..+-++|.++..-+....+.++++.+++.++++|+
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ 203 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAK 203 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344456666778889999999999999999999999999999988
No 116
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=58.25 E-value=5 Score=31.14 Aligned_cols=16 Identities=13% Similarity=-0.043 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 022226 193 AIGCSAFFAVALRSLA 208 (300)
Q Consensus 193 ~l~~~~i~~t~~~~~l 208 (300)
.++..|++.|.++|.+
T Consensus 58 vili~GvvvT~vays~ 73 (129)
T PF15099_consen 58 VILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHhhHhheeeEee
Confidence 5666777777777654
No 117
>PF15102 TMEM154: TMEM154 protein family
Probab=57.73 E-value=7.8 Score=31.03 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=19.6
Q ss_pred HHHHhhhhhhhhccchhhhhcccc-----ccccccccCCCCCccc
Q 022226 252 ATIVAFGFYSVIWGQSEEEKMIDD-----KDIDSLKSSSPKAPLL 291 (300)
Q Consensus 252 ~~lil~Gv~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 291 (300)
.+|++..++++.+.++|+.|.+.. .+.+.++.+.++.+.|
T Consensus 69 vlLLl~vV~lv~~~kRkr~K~~~ss~gsq~~~qt~e~~~Env~~P 113 (146)
T PF15102_consen 69 VLLLLSVVCLVIYYKRKRTKQEPSSQGSQSALQTYELGSENVKVP 113 (146)
T ss_pred HHHHHHHHHheeEEeecccCCCCccccccccccccccCccccccc
Confidence 344555566666555554443211 2234555555555544
No 118
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.09 E-value=1.1e+02 Score=24.79 Aligned_cols=108 Identities=10% Similarity=-0.016 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022226 8 AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC 87 (300)
Q Consensus 8 ~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~ 87 (300)
+..+.+..+-.....+.-...+..=+|+.-.+.-+..+++. +..+.....++.. .....+.-+|..+-|++|..+-+.
T Consensus 8 l~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~-L~~l~l~~~~~~~-~a~~~~~pwW~~~GG~lGa~~vt~ 85 (150)
T COG3238 8 LFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVL-LLILLLIKQGHPG-LAAVASAPWWAWIGGLLGAIFVTS 85 (150)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHhcCCCc-hhhccCCchHHHHccchhhhhhhh
Confidence 33344444444443333333233136999999999999988 8777766333211 111122235556667777555555
Q ss_pred HHHhccccChhhHh-hhhhhhHHHHHHHHHH
Q 022226 88 LYVGIGYSSPTLSS-AIVDLTPAFTFILALI 117 (300)
Q Consensus 88 ~~~al~~~~~~~a~-~i~~l~Pi~~~ila~~ 117 (300)
-........++... ++..-+-+...+++.+
T Consensus 86 s~~l~p~lGa~~t~~l~i~gQli~glliD~f 116 (150)
T COG3238 86 SILLAPRLGAATTIALVIAGQLIMGLLIDHF 116 (150)
T ss_pred hHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555544444 4445566666666665
No 119
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=55.88 E-value=94 Score=24.05 Aligned_cols=52 Identities=10% Similarity=0.092 Sum_probs=40.9
Q ss_pred HHHH-HHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhccCccc--cchh
Q 022226 78 GLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRGIDCDF--VQGA 129 (300)
Q Consensus 78 gl~g-~~~~~~~~~al~~~~~~~a~~i-~~l~Pi~~~ila~~~l~e~~~~--~~G~ 129 (300)
.+.+ ...++++..++++.+.+.+=.+ ..+.-+.+.++++++++|+.++ ..|.
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi 91 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3344 6788899999999998888766 4688889999999999999544 3555
No 120
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=54.14 E-value=8.7 Score=23.97 Aligned_cols=7 Identities=14% Similarity=0.140 Sum_probs=3.1
Q ss_pred hhhhhhh
Q 022226 257 FGFYSVI 263 (300)
Q Consensus 257 ~Gv~l~~ 263 (300)
.|+.+++
T Consensus 21 iGl~IyQ 27 (49)
T PF11044_consen 21 IGLSIYQ 27 (49)
T ss_pred HHHHHHH
Confidence 3444444
No 121
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=48.98 E-value=2.4e+02 Score=27.22 Aligned_cols=19 Identities=0% Similarity=-0.178 Sum_probs=11.1
Q ss_pred HHHHhhhcCCceeecchhh
Q 022226 209 HTWACHKKGPVYVSMYKPL 227 (300)
Q Consensus 209 ~~~a~~~~~~~~~s~~~~l 227 (300)
..+..+..|+..-+..+-+
T Consensus 404 ~s~~~~~aP~~~rg~~~g~ 422 (500)
T PRK09584 404 LAMVAQLVPQRLMGFIMGS 422 (500)
T ss_pred HHHHHHhCcHHHHHHHHHH
Confidence 3446666677666665543
No 122
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=48.14 E-value=46 Score=32.13 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=21.0
Q ss_pred ccchhhhhHHHHhhhhhhhhccchhhhh
Q 022226 244 LYLGSVVGATIVAFGFYSVIWGQSEEEK 271 (300)
Q Consensus 244 ~~~~~~iG~~lil~Gv~l~~~~~~~~~~ 271 (300)
++..|+++..+++.|++++.+.++++++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~~~~ 281 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKGREA 281 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 6888999999999998877654443333
No 123
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=47.84 E-value=38 Score=25.53 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=37.7
Q ss_pred cchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccch
Q 022226 223 MYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 267 (300)
Q Consensus 223 ~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~ 267 (300)
.+.-+..+.+.++.++.-|..|+.+.++|.++-+.|+.++...++
T Consensus 63 AYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 63 AYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 445567788999999999999999999999999999887766543
No 124
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=46.73 E-value=1.3e+02 Score=22.89 Aligned_cols=44 Identities=14% Similarity=0.001 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhccCccc
Q 022226 82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRGIDCDF 125 (300)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~i-~~l~Pi~~~ila~~~l~e~~~~ 125 (300)
...++++..++++.|.+.+=.+ ....-+.+.+.+++++||+.++
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~ 90 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNR 90 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 5778888999999998877544 5578888999999999999544
No 125
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.71 E-value=1.3e+02 Score=27.90 Aligned_cols=87 Identities=14% Similarity=0.017 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 022226 16 LEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYS 95 (300)
Q Consensus 16 ~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~al~~~ 95 (300)
+|+.+.-++|.+.++ ..-...--..+.++-+.+.+.+.+.-.-|..+++-+++.-.....+-+ .+..+.|.|+++.
T Consensus 200 gWs~slY~i~ql~~n-Lq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilmWtLql---i~lvl~Yfsvq~p 275 (452)
T KOG3817|consen 200 GWSISLYVIKQLADN-LQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILMWTLQL---IGLVLAYFSVQHP 275 (452)
T ss_pred cchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHH---HHHHHHHHhcccH
Confidence 588888999999887 666666666666665542333333222222223222222122222222 3344567899999
Q ss_pred ChhhHhhhhhh
Q 022226 96 SPTLSSAIVDL 106 (300)
Q Consensus 96 ~~~~a~~i~~l 106 (300)
+++.|++|+.+
T Consensus 276 ~~a~A~iI~~l 286 (452)
T KOG3817|consen 276 SAAIAAIIMVL 286 (452)
T ss_pred HHHHHHHHHHH
Confidence 88887776544
No 126
>PRK10489 enterobactin exporter EntS; Provisional
Probab=44.94 E-value=2.6e+02 Score=25.87 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=7.8
Q ss_pred hhhhHHHHhhhhhhhh
Q 022226 248 SVVGATIVAFGFYSVI 263 (300)
Q Consensus 248 ~~iG~~lil~Gv~l~~ 263 (300)
...|+...+.++....
T Consensus 382 ~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 382 SASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445455555555444
No 127
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=40.47 E-value=54 Score=24.70 Aligned_cols=25 Identities=4% Similarity=-0.093 Sum_probs=14.9
Q ss_pred hhhhHHHHhhhhhhhhccchhhhhc
Q 022226 248 SVVGATIVAFGFYSVIWGQSEEEKM 272 (300)
Q Consensus 248 ~~iG~~lil~Gv~l~~~~~~~~~~~ 272 (300)
.++..+.++++++++..+.++-...
T Consensus 56 ~~~~~~w~~~A~~ly~~RP~s~R~~ 80 (103)
T PF11027_consen 56 FMMMMLWMVLAMALYLLRPSSLRSR 80 (103)
T ss_pred HHHHHHHHHHHHHHHHcCchhhcCC
Confidence 4455566666777777666555444
No 128
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=40.26 E-value=1.6e+02 Score=28.32 Aligned_cols=44 Identities=16% Similarity=-0.033 Sum_probs=25.7
Q ss_pred cchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccc
Q 022226 223 MYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 223 ~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~ 266 (300)
......|+++.++..+..-..-......|.++++.|+.++...+
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~ 436 (473)
T TIGR00905 393 RKALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRAR 436 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677776655443322222345668888888877666533
No 129
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=39.70 E-value=1.7e+02 Score=24.68 Aligned_cols=83 Identities=12% Similarity=0.022 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcC--CceeecchhhHHHHHHHHHH-------HHhcCcccchhhhhHHHHhhhh
Q 022226 189 TELIAIGCSAFFAVALRSLAHTWACHKKG--PVYVSMYKPLGIVFAIIMGV-------TLLGDTLYLGSVVGATIVAFGF 259 (300)
Q Consensus 189 ~~~~~l~~~~i~~t~~~~~l~~~a~~~~~--~~~~s~~~~l~Pi~a~i~~~-------~~l~E~~~~~~~iG~~lil~Gv 259 (300)
..++.++..|+++.+.-|.+|.++.+..+ +.+-+..-++--....++-| .++-..+++. .--.++.++|.
T Consensus 125 ~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~-L~pi~l~IiGa 203 (226)
T COG4858 125 YGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQ-LPPIALTIIGA 203 (226)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcC-CchHHHHHHHH
Confidence 34677777888887778888888888877 55555444443333322222 2333333332 23345555555
Q ss_pred hhhhccchhhhhc
Q 022226 260 YSVIWGQSEEEKM 272 (300)
Q Consensus 260 ~l~~~~~~~~~~~ 272 (300)
.+...+-.-++|+
T Consensus 204 v~lalRfylkkk~ 216 (226)
T COG4858 204 VILALRFYLKKKK 216 (226)
T ss_pred HHHHHHHHHHHhh
Confidence 5444443333333
No 130
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=39.56 E-value=1.2e+02 Score=24.18 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcccchhhhhHHH-Hhhhhhhhhccch
Q 022226 189 TELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATI-VAFGFYSVIWGQS 267 (300)
Q Consensus 189 ~~~~~l~~~~i~~t~~~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~l-il~Gv~l~~~~~~ 267 (300)
..+.....+.+.+.+.-|..-.+..||.|.++.+.. --..+.+.+.+++... |..+ -+.|.++..+-++
T Consensus 31 ~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~---ga~iG~IvG~f~~~p~-------G~iiG~~~Ga~l~El~~~ 100 (140)
T PF04306_consen 31 WFLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIW---GAIIGGIVGFFVLPPL-------GLIIGPFLGAFLGELLRG 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHhC
Confidence 346666677788899999999999999999998876 3455666666655421 3222 3366776665333
Q ss_pred h
Q 022226 268 E 268 (300)
Q Consensus 268 ~ 268 (300)
|
T Consensus 101 ~ 101 (140)
T PF04306_consen 101 K 101 (140)
T ss_pred C
Confidence 3
No 131
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=39.44 E-value=3.7e+02 Score=26.15 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHH
Q 022226 154 ELMATFICCVFVTIQ 168 (300)
Q Consensus 154 ~~~~~~~~~~~~~i~ 168 (300)
|......+.+++.+.
T Consensus 331 P~~a~~~~~~i~~l~ 345 (507)
T TIGR00910 331 PVPLVIIQGIITSIA 345 (507)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344555555555443
No 132
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=39.37 E-value=66 Score=27.11 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=5.3
Q ss_pred hhhHHHHhhhhh
Q 022226 249 VVGATIVAFGFY 260 (300)
Q Consensus 249 ~iG~~lil~Gv~ 260 (300)
.+|+++++...+
T Consensus 136 ~iGvilLl~~~~ 147 (191)
T PRK14789 136 TIGVAALAFHII 147 (191)
T ss_pred HHHHHHHHHHHH
Confidence 345544444333
No 133
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=39.36 E-value=24 Score=27.41 Aligned_cols=26 Identities=4% Similarity=0.070 Sum_probs=11.2
Q ss_pred HHhcCcccchh--hhh--HHHHhhhhhhhh
Q 022226 238 TLLGDTLYLGS--VVG--ATIVAFGFYSVI 263 (300)
Q Consensus 238 ~~l~E~~~~~~--~iG--~~lil~Gv~l~~ 263 (300)
+|=-|-.+++. +++ ++.+++|+++..
T Consensus 26 ~fR~ED~tpWNysiL~Ls~vvlvi~~~LLg 55 (125)
T PF15048_consen 26 FFRVEDATPWNYSILALSFVVLVISFFLLG 55 (125)
T ss_pred heecCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 34445555442 222 333345555443
No 134
>PRK11469 hypothetical protein; Provisional
Probab=38.29 E-value=16 Score=30.73 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=27.7
Q ss_pred ecchhhHHHHHHHHHHHHhcCcccchhhhhHH-HHhhhhhhhh
Q 022226 222 SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGAT-IVAFGFYSVI 263 (300)
Q Consensus 222 s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~-lil~Gv~l~~ 263 (300)
+.++.+.|..+...|..+-+=......++|.. |+..|.+++.
T Consensus 44 g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 44 GAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888886555444455677754 4557888776
No 135
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=38.14 E-value=16 Score=29.70 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=13.2
Q ss_pred eeecchhhHHHHHHHHHHHH
Q 022226 220 YVSMYKPLGIVFAIIMGVTL 239 (300)
Q Consensus 220 ~~s~~~~l~Pi~a~i~~~~~ 239 (300)
+.+.+.|+.|+++++.+..+
T Consensus 76 kaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 76 RSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556677888877776553
No 136
>PRK09399 sspP acid-soluble spore protein P; Provisional
Probab=37.51 E-value=24 Score=22.23 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=16.7
Q ss_pred cccccccCCCCCccccchhhhccC
Q 022226 277 DIDSLKSSSPKAPLLQTKSIFCRN 300 (300)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
.++...++-+++|+--+++--+||
T Consensus 13 N~~k~~~~gQPEPLSGSkKVKnrN 36 (48)
T PRK09399 13 NAPKGENPGQPEPLSGSKKVKNRN 36 (48)
T ss_pred ccCCCCCCCCCCCCCcchhhhccc
Confidence 334444555778998888888876
No 137
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=37.07 E-value=3.7e+02 Score=25.43 Aligned_cols=13 Identities=15% Similarity=-0.136 Sum_probs=7.3
Q ss_pred ChHHHHHHHHHHH
Q 022226 33 SDFVLIVYSNAFA 45 (300)
Q Consensus 33 ~p~~~~~~R~~~a 45 (300)
+...+...|.+.+
T Consensus 121 ~~~~l~~~r~l~G 133 (467)
T PRK09556 121 SLGLMIALWALSG 133 (467)
T ss_pred hHHHHHHHHHHHH
Confidence 4555666665544
No 138
>PRK11056 hypothetical protein; Provisional
Probab=36.39 E-value=2e+02 Score=22.21 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhccC
Q 022226 65 PLTVSIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRGID 122 (300)
Q Consensus 65 ~~~~~~~~~~~~~gl~g-~~~~~~~~~al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~ 122 (300)
+.+++.+..-++.|+.+ .....++. ..+=.+.-|+++.+++..-++++
T Consensus 6 ~~ek~tLlLaliaGl~~ng~fs~Lf~----------s~VpFSiFPlIaLvLavycLyQ~ 54 (120)
T PRK11056 6 RQEKGTLLLALIAGLSINGTFAALFS----------SIVPFSIFPLIALVLAVYCLHQR 54 (120)
T ss_pred ccchhhHHHHHHHHHhhchhhHHHHc----------cccccHHHHHHHHHHHHHHHHHH
Confidence 34565666666677766 33332221 12234567999999998888777
No 139
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=35.10 E-value=35 Score=30.60 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=42.1
Q ss_pred eecchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhh
Q 022226 221 VSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 269 (300)
Q Consensus 221 ~s~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~ 269 (300)
--++..-.++..++.++++.|.+-+..|+....++-.|+.+.+..+.++
T Consensus 94 HiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d 142 (330)
T KOG1583|consen 94 HIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKD 142 (330)
T ss_pred EEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcc
Confidence 3456667889999999999999999999999999999999988765544
No 140
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=33.25 E-value=3.8e+02 Score=25.62 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhc
Q 022226 226 PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 226 ~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
...+..+.++..+..=..--....+|.++++.|+.++.+
T Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 429 (468)
T TIGR03810 391 LLIGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYAR 429 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544333222223577888889999888865
No 141
>PRK15049 L-asparagine permease; Provisional
Probab=32.33 E-value=2.9e+02 Score=26.76 Aligned_cols=12 Identities=0% Similarity=-0.205 Sum_probs=5.0
Q ss_pred cccccccccCCC
Q 022226 275 DKDIDSLKSSSP 286 (300)
Q Consensus 275 ~~~~~~~~~~~~ 286 (300)
++.+++++++-+
T Consensus 477 ~~~~~~~~~~~~ 488 (499)
T PRK15049 477 STAPVVEEDEEK 488 (499)
T ss_pred CCCCcccccccc
Confidence 333444444433
No 142
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=31.98 E-value=1e+02 Score=27.36 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=28.4
Q ss_pred eecchhhHHHHHHHHHHHHhcC-----cccchhhhhHHHHhhhhhhhhc
Q 022226 221 VSMYKPLGIVFAIIMGVTLLGD-----TLYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 221 ~s~~~~l~Pi~a~i~~~~~l~E-----~~~~~~~iG~~lil~Gv~l~~~ 264 (300)
.+.+..+..+.=.+...+=-++ .+|..|+++..+++.|+.+..+
T Consensus 207 f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~ 255 (269)
T PRK12437 207 FALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIY 255 (269)
T ss_pred HHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555431121 2678899999999999887654
No 143
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=31.50 E-value=50 Score=25.05 Aligned_cols=24 Identities=8% Similarity=0.299 Sum_probs=12.9
Q ss_pred hhhHHHHh-hhhhhhhccchhhhhc
Q 022226 249 VVGATIVA-FGFYSVIWGQSEEEKM 272 (300)
Q Consensus 249 ~iG~~lil-~Gv~l~~~~~~~~~~~ 272 (300)
++|.+|++ .+.-+..|+..|+++|
T Consensus 6 il~llLll~l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 6 ILALLLLLSLAASLLAWRMKQRQKK 30 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45555443 5666666665555444
No 144
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=30.28 E-value=1.2e+02 Score=24.49 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=33.8
Q ss_pred hccccChhhHhhhhhhhHHHHHHHHHHHhccCccccchh---hhHHHHHHHHHHHHHHHHHhh
Q 022226 91 GIGYSSPTLSSAIVDLTPAFTFILALISRGIDCDFVQGA---STSGSFFLSLLYIVQTSIIRE 150 (300)
Q Consensus 91 al~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~~~~G~---~l~a~~~~a~~~v~~~~~~~~ 150 (300)
++...+.-.++.+.|+.|++.++.+..+...-. .++ ++.+..+.++...+.|...++
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~~~~~---~~e~~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALFQLLF---GSDLAALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455667888999999998888766532111 122 445555555555555655444
No 145
>PRK02463 OxaA-like protein precursor; Provisional
Probab=29.67 E-value=98 Score=28.18 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=25.4
Q ss_pred chhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 224 YKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 224 ~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
.+++.|++.+++++. +---+..+-.++.++-++=-++++
T Consensus 210 m~~~~Pim~~~~~~~-~PagL~lYW~~snlfsi~Q~~i~~ 248 (307)
T PRK02463 210 MMYMMPIMMVVFSFS-SPAGVGLYWLVGGFFSIIQQLITT 248 (307)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888777764 444566666667666665555544
No 146
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=29.41 E-value=40 Score=28.86 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=8.0
Q ss_pred hHHHHhhhhhhhh
Q 022226 251 GATIVAFGFYSVI 263 (300)
Q Consensus 251 G~~lil~Gv~l~~ 263 (300)
+.+||++-+++++
T Consensus 49 tVILVI~i~v~vR 61 (221)
T PF08374_consen 49 TVILVIFIVVLVR 61 (221)
T ss_pred hhHHHHHHHHHHH
Confidence 4566666666665
No 147
>PRK11431 multidrug efflux system protein; Provisional
Probab=29.27 E-value=2.5e+02 Score=21.10 Aligned_cols=44 Identities=9% Similarity=-0.030 Sum_probs=36.0
Q ss_pred HHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhccCccc
Q 022226 82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRGIDCDF 125 (300)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~i-~~l~Pi~~~ila~~~l~e~~~~ 125 (300)
...++++..++++.|.+.+=.+ ..+.-+.+.+.+.+++||+.++
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~ 84 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASP 84 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 5788888999999998877544 5588889999999999999544
No 148
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=29.05 E-value=2.7e+02 Score=21.46 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhcCCceeecchhhHHHHHHHHHHHHhcCcc-cchhhhhHHHHhhhhhhhhc
Q 022226 205 RSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTL-YLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 205 ~~~l~~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~-~~~~~iG~~lil~Gv~l~~~ 264 (300)
+...+.+-.++.+-.+-...-+.........-....|=-+ +....+...++...+|+..+
T Consensus 58 gl~s~if~~e~~s~~~~~iiHf~~~~~~~~~~~~~~gW~~~~~~~~~~~~~~fi~IYliIw 118 (136)
T PF11457_consen 58 GLASLIFEIERWSLLKQTIIHFIITYAIFLILAYLLGWFPLSVISLLIFILIFIIIYLIIW 118 (136)
T ss_pred HHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3333344445555444444444444333333333322222 22255555555556665544
No 149
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.69 E-value=3.4e+02 Score=22.48 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022226 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62 (300)
Q Consensus 5 ~~~~~l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~ 62 (300)
|...++++.+++-+...++.|++.+. .+-..+=.=-+++++++ ++...+-.+.+.+
T Consensus 20 k~~swLvl~~vl~~~~nvv~Ry~~N~-sSna~lEaqWyLF~~vF-llaaaYtL~~neH 75 (182)
T COG4665 20 KAASWLVLVAVLVSAGNVVMRYAFNM-SSNAWLEAQWYLFGAVF-LLAAAYTLKQNEH 75 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHH-HHHHHHHHhcCCc
Confidence 44567788888999999999999876 55555555667888888 8777765554433
No 150
>PF08179 SspP: Small acid-soluble spore protein P family; InterPro: IPR012614 This family consists of the small acid-soluble spore proteins (SASP) P type (sspP). sspP is expressed only in the forespore compartment of the sporulating cell. sspP is also expressed under sigma-G control from the same promoter as sspO. Mutations deleting sspP causes no discernible effect on sporulation, spore properties or spore germination [].; GO: 0030435 sporulation resulting in formation of a cellular spore
Probab=27.93 E-value=40 Score=21.00 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=15.1
Q ss_pred ccccCCCCCccccchhhhccC
Q 022226 280 SLKSSSPKAPLLQTKSIFCRN 300 (300)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~ 300 (300)
...++.+++|+--+++--.||
T Consensus 16 k~~~~gQpePLSGSkKVK~rN 36 (45)
T PF08179_consen 16 KGHNPGQPEPLSGSKKVKNRN 36 (45)
T ss_pred cCCCCCCCCcCccchhhhccc
Confidence 334556678998888877776
No 151
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=27.64 E-value=2.3e+02 Score=25.54 Aligned_cols=38 Identities=5% Similarity=-0.165 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCc------eeecchhhHHH
Q 022226 193 AIGCSAFFAVALRSLAHTWACHKKGPV------YVSMYKPLGIV 230 (300)
Q Consensus 193 ~l~~~~i~~t~~~~~l~~~a~~~~~~~------~~s~~~~l~Pi 230 (300)
.+...|.+...+++.+...+..|+|.. +++-.....|+
T Consensus 116 ~l~~ig~il~~IG~ILlgi~~yrlG~~y~~~~ikvgGIL~ii~~ 159 (285)
T PF06157_consen 116 ILLLIGAILAFIGYILLGIGLYRLGSRYNNGLIKVGGILIIIPI 159 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCceehhhHHHHHHH
Confidence 445555566677777777777776665 45555555555
No 152
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=27.06 E-value=3.6e+02 Score=22.18 Aligned_cols=24 Identities=21% Similarity=-0.020 Sum_probs=12.9
Q ss_pred hHhhhhhhhHH-HHHHHHHHHhccC
Q 022226 99 LSSAIVDLTPA-FTFILALISRGID 122 (300)
Q Consensus 99 ~a~~i~~l~Pi-~~~ila~~~l~e~ 122 (300)
......++.|+ ..+++...+.++|
T Consensus 59 ~~~~~~~~~P~a~~~~l~~~l~~~~ 83 (194)
T PF07698_consen 59 DISYFPYLIPVAAAAMLLTILIDPR 83 (194)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcch
Confidence 44555666665 3444444555666
No 153
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=26.77 E-value=47 Score=24.11 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=10.2
Q ss_pred chhhhhHHHHhhhhhhh
Q 022226 246 LGSVVGATIVAFGFYSV 262 (300)
Q Consensus 246 ~~~~iG~~lil~Gv~l~ 262 (300)
...++|..+.+.|..+.
T Consensus 4 ~~Fl~~l~lliig~~~~ 20 (92)
T PF13038_consen 4 ILFLVGLILLIIGGFLF 20 (92)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566776666665544
No 154
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=26.67 E-value=2.7e+02 Score=20.58 Aligned_cols=65 Identities=20% Similarity=0.100 Sum_probs=29.5
Q ss_pred HHHhhhcCCceeecchhhHHHHHHHHHHHH--h-cCc-ccchhhhhHHHHhhhhhhhhccchhhhhccc
Q 022226 210 TWACHKKGPVYVSMYKPLGIVFAIIMGVTL--L-GDT-LYLGSVVGATIVAFGFYSVIWGQSEEEKMID 274 (300)
Q Consensus 210 ~~a~~~~~~~~~s~~~~l~Pi~a~i~~~~~--l-~E~-~~~~~~iG~~lil~Gv~l~~~~~~~~~~~~~ 274 (300)
..++++.+...--.+-.+.-+.++++|.+. + ++. +-...+.|+.-=+.+.-+.....+|.+|+.+
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e 90 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGE 90 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCc
Confidence 556776653333333233333444443331 2 222 3333466665555555555554444444433
No 155
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=25.98 E-value=1.6e+02 Score=26.32 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=17.8
Q ss_pred ccchhhhhHHHHhhhhhhhhc
Q 022226 244 LYLGSVVGATIVAFGFYSVIW 264 (300)
Q Consensus 244 ~~~~~~iG~~lil~Gv~l~~~ 264 (300)
+|..|+++..+++.|+++..+
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~ 266 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLL 266 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999887654
No 156
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=25.70 E-value=21 Score=23.92 Aligned_cols=23 Identities=13% Similarity=0.426 Sum_probs=17.5
Q ss_pred hhhHHHHhhhhhhhhccchhhhh
Q 022226 249 VVGATIVAFGFYSVIWGQSEEEK 271 (300)
Q Consensus 249 ~iG~~lil~Gv~l~~~~~~~~~~ 271 (300)
++|.+|++.|+.+..+.-+..+.
T Consensus 2 iigi~Llv~GivLl~~G~~~~~S 24 (59)
T PF11381_consen 2 IIGIALLVGGIVLLYFGYQASDS 24 (59)
T ss_pred eeeehHHHHHHHHHHhhhhhhhh
Confidence 57899999999988876544443
No 157
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.53 E-value=2.2e+02 Score=22.94 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=21.8
Q ss_pred hccccChhhHhhhhhhhHHHHHHHHHHH
Q 022226 91 GIGYSSPTLSSAIVDLTPAFTFILALIS 118 (300)
Q Consensus 91 al~~~~~~~a~~i~~l~Pi~~~ila~~~ 118 (300)
|+.--+.-.++++.++.|+++.+++.++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456678899999999999998876
No 158
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=25.06 E-value=57 Score=18.59 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=8.7
Q ss_pred cchhhhhHHHHhhhhhh
Q 022226 245 YLGSVVGATIVAFGFYS 261 (300)
Q Consensus 245 ~~~~~iG~~lil~Gv~l 261 (300)
+...++|.+++..+.++
T Consensus 11 ~~~~~~G~~l~~~~~~~ 27 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGLL 27 (34)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44456666455454443
No 159
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=24.50 E-value=2.5e+02 Score=23.24 Aligned_cols=18 Identities=17% Similarity=-0.064 Sum_probs=11.6
Q ss_pred cccccc-cCCCCCccccch
Q 022226 277 DIDSLK-SSSPKAPLLQTK 294 (300)
Q Consensus 277 ~~~~~~-~~~~~~~~~~~~ 294 (300)
.++++. +.+..+|+||-|
T Consensus 127 knRvDps~qS~sNPvPDYY 145 (173)
T PF08566_consen 127 KNRVDPSSQSFSNPVPDYY 145 (173)
T ss_pred HcCCCccccccCCCCCchh
Confidence 455554 556678899865
No 160
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=24.24 E-value=84 Score=21.91 Aligned_cols=9 Identities=33% Similarity=0.670 Sum_probs=3.9
Q ss_pred hhhHHHHhh
Q 022226 249 VVGATIVAF 257 (300)
Q Consensus 249 ~iG~~lil~ 257 (300)
++|+..|+.
T Consensus 9 i~Gm~iVF~ 17 (79)
T PF04277_consen 9 IIGMGIVFL 17 (79)
T ss_pred HHHHHHHHH
Confidence 444444443
No 161
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=23.73 E-value=5.6e+02 Score=23.33 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=9.9
Q ss_pred cChhhHhhhhhhhHHHHHHHH
Q 022226 95 SSPTLSSAIVDLTPAFTFILA 115 (300)
Q Consensus 95 ~~~~~a~~i~~l~Pi~~~ila 115 (300)
.++.+.+.+.....+...+..
T Consensus 35 ~s~~~~g~~~~~~~l~~~i~~ 55 (396)
T TIGR00882 35 LSKTDTGIVFSCISLFSILFQ 55 (396)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 355555555444444444333
No 162
>KOG4491 consensus Predicted membrane protein [Function unknown]
Probab=22.85 E-value=3.1e+02 Score=24.03 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=26.1
Q ss_pred CCccchhHHHH----HHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHH
Q 022226 1 MWSVGVTAVMV----AVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIF 48 (300)
Q Consensus 1 ~~~~~~~~~l~----~~~~~w~~~~~~~K~~~~~-~~~p~~~~~~R~~~a~l~ 48 (300)
||++.++..+- ++.++|-.+-..+|.-.+. ..|| ||.+++.++
T Consensus 1 ~~~~~~i~~~~l~i~isl~~w~~~~~~s~~~~~~r~ipp-----~RwlFsvvv 48 (323)
T KOG4491|consen 1 IKMITNIVILSLIICISLAFWIISMTASTYYGNLRPIPP-----WRWLFSVVV 48 (323)
T ss_pred CccchhhhhHHhHHHHHHHHHHHHHHHHHHhccCccCCc-----HHHHHHHHH
Confidence 45555544432 3456677777777765433 2455 788998877
No 163
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=21.98 E-value=98 Score=21.96 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=5.0
Q ss_pred Hhhhhhhhhccc
Q 022226 255 VAFGFYSVIWGQ 266 (300)
Q Consensus 255 il~Gv~l~~~~~ 266 (300)
++.|+.......
T Consensus 10 ivlGLlvLIltC 21 (88)
T PF15144_consen 10 IVLGLLVLILTC 21 (88)
T ss_pred HHHHHHHHHhhh
Confidence 344544444333
No 164
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=21.92 E-value=6.8e+02 Score=23.61 Aligned_cols=41 Identities=2% Similarity=-0.280 Sum_probs=21.8
Q ss_pred cchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhh
Q 022226 223 MYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 263 (300)
Q Consensus 223 ~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~ 263 (300)
+.....|+.+++...+..-..-......+...++.|..++.
T Consensus 385 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 425 (445)
T PRK10644 385 PAYLAVTLIAFVYCIWAVVGSGAKEVMWSFVTLMVITAFYA 425 (445)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45567788888777665432222223344444555555443
No 165
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=21.91 E-value=6.7e+02 Score=23.59 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHh-----cCcccchhhhhHHHHhhhhhhhhccchh
Q 022226 225 KPLGIVFAIIMGVTLL-----GDTLYLGSVVGATIVAFGFYSVIWGQSE 268 (300)
Q Consensus 225 ~~l~Pi~a~i~~~~~l-----~E~~~~~~~iG~~lil~Gv~l~~~~~~~ 268 (300)
....|+.+++.+.++. .|+.. ..+.+..+++.|+.++...++|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 390 FGLMTTLAIASSLILVASTFVWAPIP-GLICAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHhhhHHhheech
Confidence 3466777777766553 33222 1235667777777665544433
No 166
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.52 E-value=1.7e+02 Score=22.70 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=34.0
Q ss_pred cccChhhHhhhhhhhHHHHHHHHHHHhccCccccchh-hhHHHHHHHHHHHHHHHHHhh
Q 022226 93 GYSSPTLSSAIVDLTPAFTFILALISRGIDCDFVQGA-STSGSFFLSLLYIVQTSIIRE 150 (300)
Q Consensus 93 ~~~~~~~a~~i~~l~Pi~~~ila~~~l~e~~~~~~G~-~l~a~~~~a~~~v~~~~~~~~ 150 (300)
...+.-.++.+.+..|++..+++.++...-... -+. ++.+..+.+.+....|...++
T Consensus 63 ~~~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~-e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 63 PESSLLKAAFLVYLLPLLALIAGAVLGSYLGGS-ELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556788889999999988887764321111 111 555555556666555555443
No 167
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=21.11 E-value=32 Score=30.82 Aligned_cols=28 Identities=4% Similarity=0.051 Sum_probs=0.0
Q ss_pred cChhhHhhhhhhhHHHHHHHH-HHHhccC
Q 022226 95 SSPTLSSAIVDLTPAFTFILA-LISRGID 122 (300)
Q Consensus 95 ~~~~~a~~i~~l~Pi~~~ila-~~~l~e~ 122 (300)
.+-+..+++.+.+.+.++|+- +++||+|
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~Rr 75 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRR 75 (381)
T ss_dssp -----------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566665555444444 4556777
No 168
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=20.77 E-value=79 Score=28.77 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC---C--C-------CCCHHHHHHHHHH
Q 022226 10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT---R--P-------PLTVSIICKIFGL 77 (300)
Q Consensus 10 l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~~ll~~~~~~~~~~~---~--~-------~~~~~~~~~~~~~ 77 (300)
|+++++|||.....-|.+-..+--| +...|-+.++-+. ...+.-+...... + | .-++..+..-..-
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL-~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aG 78 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLL-AALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAG 78 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHH-HHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHh
Confidence 5678999999999999997654333 3344555555544 2222222211111 0 1 1122222222223
Q ss_pred HHHHHHHHHHHHHhccccChhhHhhhhh
Q 022226 78 GLISCCVQTCLYVGIGYSSPTLSSAIVD 105 (300)
Q Consensus 78 gl~g~~~~~~~~~al~~~~~~~a~~i~~ 105 (300)
|++-.+++.+..+|+.+...+.+-.+..
T Consensus 79 GvvfnlgNillq~aia~aGmSVafpvg~ 106 (336)
T PF07168_consen 79 GVVFNLGNILLQAAIAFAGMSVAFPVGI 106 (336)
T ss_pred hHhhhhHHHHHHHHHHHhcceeeeeeec
Confidence 3333677778888888877666655543
No 169
>PRK10054 putative transporter; Provisional
Probab=20.63 E-value=6.7e+02 Score=23.04 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=5.3
Q ss_pred ChhhHhhhhhhh
Q 022226 96 SPTLSSAIVDLT 107 (300)
Q Consensus 96 ~~~~a~~i~~l~ 107 (300)
+...++.+....
T Consensus 41 s~~~~g~~~s~~ 52 (395)
T PRK10054 41 SVDLIGYAMTIA 52 (395)
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
No 170
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.63 E-value=5.1e+02 Score=21.74 Aligned_cols=18 Identities=6% Similarity=-0.237 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022226 10 MVAVECLEVGSSTLNKAA 27 (300)
Q Consensus 10 l~~~~~~w~~~~~~~K~~ 27 (300)
+.+.+++.|.+..+.+..
T Consensus 90 ~~if~~~~gi~~~f~~~~ 107 (206)
T PF06570_consen 90 FGIFSLLFGIMGFFSPKN 107 (206)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 334555556565555543
Done!