Query 022226
Match_columns 300
No_of_seqs 118 out of 1209
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 16:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.2 1.6E-11 5.5E-16 96.8 5.6 71 196-266 34-105 (137)
2 3b5d_A Multidrug transporter E 98.7 1.9E-08 6.6E-13 76.3 6.4 70 196-265 34-104 (110)
3 2i68_A Protein EMRE; transmemb 96.7 0.0042 1.4E-07 48.4 7.2 54 76-129 34-91 (137)
4 3b5d_A Multidrug transporter E 96.4 0.022 7.4E-07 42.5 9.0 54 76-129 34-91 (110)
5 3b9w_A Ammonium transporter fa 57.6 1.1E+02 0.0038 27.7 15.8 21 72-92 177-198 (407)
6 3l1l_A Arginine/agmatine antip 47.9 27 0.00092 31.4 5.8 47 223-269 385-431 (445)
7 4aps_A DI-OR tripeptide H+ sym 41.9 1.9E+02 0.0064 25.7 10.9 15 208-222 407-421 (491)
8 1s4x_A Integrin beta-3; cell a 41.0 6.8 0.00023 26.1 0.4 39 248-286 10-50 (67)
9 2jo1_A Phospholemman; FXYD1, N 29.0 35 0.0012 22.7 2.3 19 248-266 21-39 (72)
10 2zxe_G FXYD10, phospholemman-l 27.9 30 0.001 23.2 1.8 18 249-266 25-42 (74)
11 2knc_B Integrin beta-3; transm 25.4 11 0.00037 25.9 -0.7 8 243-250 7-14 (79)
12 2rdd_B UPF0092 membrane protei 21.3 39 0.0013 19.3 1.3 17 255-271 12-28 (37)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.19 E-value=1.6e-11 Score=96.80 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceeecc-hhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccc
Q 022226 196 CSAFFAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 196 ~~~i~~t~~~~~l~~~a~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~ 266 (300)
.+++++++++|++|++++++.+++++.++ ..+.|+++.++|++++||++++.+++|+++|+.|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35677899999999999999999999999 899999999999999999999999999999999999988644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.72 E-value=1.9e-08 Score=76.29 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceeecc-hhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhcc
Q 022226 196 CSAFFAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 265 (300)
Q Consensus 196 ~~~i~~t~~~~~l~~~a~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~ 265 (300)
..++++.+++|+++.+++|+.|.+.+.++ ..+.|+++.+.|++++||++|..+++|..+++.|+++....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35667889999999999999999999988 89999999999999999999999999999999999988754
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.74 E-value=0.0042 Score=48.44 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=39.4
Q ss_pred HHHHHH-HHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhccC--ccccchh
Q 022226 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRGID--CDFVQGA 129 (300)
Q Consensus 76 ~~gl~g-~~~~~~~~~al~~~~~~~a~~i-~~l~Pi~~~ila~~~l~e~--~~~~~G~ 129 (300)
+.|++. .+.++++..++++.+++.+..+ .++.|+++.++++++++|+ .....|.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi 91 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGM 91 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 566666 7889999999999999999988 8999999999999999999 3344666
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.39 E-value=0.022 Score=42.53 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=45.8
Q ss_pred HHHHHH-HHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhccCcc--ccchh
Q 022226 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRGIDCD--FVQGA 129 (300)
Q Consensus 76 ~~gl~g-~~~~~~~~~al~~~~~~~a~~i-~~l~Pi~~~ila~~~l~e~~~--~~~G~ 129 (300)
+.++++ .+.+.++..++++.+.+.+..+ ..+.|+++.++++++++|+.+ ...|.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi 91 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGM 91 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 455666 7888899999999999999888 799999999999999999943 34566
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=57.59 E-value=1.1e+02 Score=27.72 Aligned_cols=21 Identities=14% Similarity=0.059 Sum_probs=12.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHhc
Q 022226 72 CKIFGLGLIS-CCVQTCLYVGI 92 (300)
Q Consensus 72 ~~~~~~gl~g-~~~~~~~~~al 92 (300)
..+..+|.+- ..+...|+-|+
T Consensus 177 ~~~~~lGt~lLW~GWfGFN~Gl 198 (407)
T 3b9w_A 177 DRFSMLGSMVLWLFWPSFATAI 198 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 3455566655 66666666663
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=47.88 E-value=27 Score=31.42 Aligned_cols=47 Identities=2% Similarity=-0.274 Sum_probs=26.1
Q ss_pred cchhhHHHHHHHHHHHHhcCcccchhhhhHHHHhhhhhhhhccchhh
Q 022226 223 MYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 269 (300)
Q Consensus 223 ~~~~l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~Gv~l~~~~~~~~ 269 (300)
......++.+.++..+..-..-......|.++++.|+.++...++++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 385 PAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp TTTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred chhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34456666666655444322222345567777888877666544333
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=41.95 E-value=1.9e+02 Score=25.74 Aligned_cols=15 Identities=7% Similarity=-0.026 Sum_probs=7.8
Q ss_pred HHHHHhhhcCCceee
Q 022226 208 AHTWACHKKGPVYVS 222 (300)
Q Consensus 208 l~~~a~~~~~~~~~s 222 (300)
.+....+..+...-+
T Consensus 407 ~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 407 GLSVTTKLAPKAFNS 421 (491)
T ss_dssp HHHHHHHHTTTTCSS
T ss_pred HHHHHHHhCCHHHHH
Confidence 455555655555433
No 8
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=40.99 E-value=6.8 Score=26.09 Aligned_cols=39 Identities=8% Similarity=-0.158 Sum_probs=14.3
Q ss_pred hhhhHHHHhhhhhhhhccchhhhhc--cccccccccccCCC
Q 022226 248 SVVGATIVAFGFYSVIWGQSEEEKM--IDDKDIDSLKSSSP 286 (300)
Q Consensus 248 ~~iG~~lil~Gv~l~~~~~~~~~~~--~~~~~~~~~~~~~~ 286 (300)
.++|.+++++--+++...++|+-+| +++..++++.+.||
T Consensus 10 ~liGl~lLliwKll~~i~DrrEyakFE~Er~~akw~~~~NP 50 (67)
T 1s4x_A 10 SSGLVPRGSHMKLLITIHDRKEFAKFEEERARAKWDTANNP 50 (67)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHTTTTTCSSSST
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHccccccCCC
Confidence 5678777776666666666666544 33333455444433
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.98 E-value=35 Score=22.67 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=12.5
Q ss_pred hhhhHHHHhhhhhhhhccc
Q 022226 248 SVVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 248 ~~iG~~lil~Gv~l~~~~~ 266 (300)
.+++++|.+.|+.++..++
T Consensus 21 LifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCc
Confidence 3456677778887776543
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=27.89 E-value=30 Score=23.23 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=12.6
Q ss_pred hhhHHHHhhhhhhhhccc
Q 022226 249 VVGATIVAFGFYSVIWGQ 266 (300)
Q Consensus 249 ~iG~~lil~Gv~l~~~~~ 266 (300)
+++++|.+.|+.++..+|
T Consensus 25 ifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 456677778888777554
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.42 E-value=11 Score=25.94 Aligned_cols=8 Identities=13% Similarity=-0.147 Sum_probs=3.3
Q ss_pred cccchhhh
Q 022226 243 TLYLGSVV 250 (300)
Q Consensus 243 ~~~~~~~i 250 (300)
+++...++
T Consensus 7 ~~n~~~Iv 14 (79)
T 2knc_B 7 GPDILVVL 14 (79)
T ss_dssp SSCSHHHH
T ss_pred CCCchhhH
Confidence 34444443
No 12
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=21.33 E-value=39 Score=19.31 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=7.4
Q ss_pred Hhhhhhhhhccchhhhh
Q 022226 255 VAFGFYSVIWGQSEEEK 271 (300)
Q Consensus 255 il~Gv~l~~~~~~~~~~ 271 (300)
+++..|....++.++++
T Consensus 12 ~~~ifYFl~iRPQ~Kr~ 28 (37)
T 2rdd_B 12 FGLIFYFMILRPQQKRT 28 (37)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHH
Confidence 33444455544444433
Done!