Query 022226
Match_columns 300
No_of_seqs 118 out of 1209
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 16:00:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022226.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022226hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 76.2 19 0.0014 29.5 21.1 37 10-46 92-128 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 58.1 44 0.0032 27.0 12.2 35 135-170 70-104 (447)
3 d1iwga8 f.35.1.1 (A:513-566,A: 39.9 71 0.0051 24.1 9.4 28 230-257 95-122 (222)
4 d1pv7a_ f.38.1.2 (A:) Lactose 21.1 1.7E+02 0.012 22.3 8.6 30 11-40 17-48 (417)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 15.3 69 0.005 23.7 4.0 32 227-258 74-105 (199)
6 d1pv7a_ f.38.1.2 (A:) Lactose 12.4 65 0.0047 25.1 3.2 12 96-107 41-52 (417)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 9.9 49 0.0036 21.3 1.2 13 254-266 30-42 (91)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 4.6 2.3E+02 0.017 13.5 2.2 10 235-244 18-27 (30)
9 d3bbda1 c.116.1.6 (A:2-205) Ri 3.7 1.4E+02 0.01 22.2 0.9 21 278-298 83-103 (204)
10 d2h8aa1 f.56.1.1 (A:9-147) Mic 3.5 57 0.0042 22.7 -1.6 10 247-256 7-16 (139)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=76.19 E-value=19 Score=29.54 Aligned_cols=37 Identities=14% Similarity=-0.141 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 022226 10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAA 46 (300)
Q Consensus 10 l~~~~~~w~~~~~~~K~~~~~~~~p~~~~~~R~~~a~ 46 (300)
+..+.++++....+.-.+....-+...+...|++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 128 (447)
T d1pw4a_ 92 LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 128 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Confidence 3344444444444333221111345566677776654
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=58.07 E-value=44 Score=27.00 Aligned_cols=35 Identities=3% Similarity=-0.114 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 022226 135 FFLSLLYIVQTSIIREYPEELMATFICCVFVTIQST 170 (300)
Q Consensus 135 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 170 (300)
+.+++.......+.++++. .......++..++...
T Consensus 70 ~~~~~~~~~~G~l~Dr~g~-r~~~~~~~~~~~~~~~ 104 (447)
T d1pw4a_ 70 IAYGFSKFIMGSVSDRSNP-RVFLPAGLILAAAVML 104 (447)
T ss_dssp HHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHh
Confidence 3344444455555666654 3333344434333333
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=39.92 E-value=71 Score=24.07 Aligned_cols=28 Identities=21% Similarity=0.077 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCcccchhhhhHHHHhh
Q 022226 230 VFAIIMGVTLLGDTLYLGSVVGATIVAF 257 (300)
Q Consensus 230 i~a~i~~~~~l~E~~~~~~~iG~~lil~ 257 (300)
+.+.+.+..+.+.+++....+|.++.++
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 4456677778999999999888777553
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=21.06 E-value=1.7e+02 Score=22.33 Aligned_cols=30 Identities=3% Similarity=-0.307 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHH-HHhc-CCChHHHHHH
Q 022226 11 VAVECLEVGSSTLNKA-AMNK-GTSDFVLIVY 40 (300)
Q Consensus 11 ~~~~~~w~~~~~~~K~-~~~~-~~~p~~~~~~ 40 (300)
+...+.++...+..-. ..++ |.++.+....
T Consensus 17 f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i 48 (417)
T d1pv7a_ 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGII 48 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 3444555544443332 2232 6888776544
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.26 E-value=69 Score=23.66 Aligned_cols=32 Identities=6% Similarity=0.026 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHhcCcccchhhhhHHHHhhh
Q 022226 227 LGIVFAIIMGVTLLGDTLYLGSVVGATIVAFG 258 (300)
Q Consensus 227 l~Pi~a~i~~~~~l~E~~~~~~~iG~~lil~G 258 (300)
...+........++|.+++.....+..+.++.
T Consensus 74 ~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 74 PVVLLGTFAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp HHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 33344444455678888888777776666543
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=12.35 E-value=65 Score=25.08 Aligned_cols=12 Identities=17% Similarity=0.063 Sum_probs=5.3
Q ss_pred ChhhHhhhhhhh
Q 022226 96 SPTLSSAIVDLT 107 (300)
Q Consensus 96 ~~~~a~~i~~l~ 107 (300)
++++.+.+....
T Consensus 41 s~~~~g~i~s~~ 52 (417)
T d1pv7a_ 41 SKSDTGIIFAAI 52 (417)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=9.94 E-value=49 Score=21.32 Aligned_cols=13 Identities=15% Similarity=-0.222 Sum_probs=5.5
Q ss_pred HHhhhhhhhhccc
Q 022226 254 IVAFGFYSVIWGQ 266 (300)
Q Consensus 254 lil~Gv~l~~~~~ 266 (300)
+++.|.+++..-+
T Consensus 30 v~V~~~~~~~~~r 42 (91)
T d1fftb2 30 IPAILMAVGFAWK 42 (91)
T ss_dssp THHHHHHHTTTTT
T ss_pred HHHHHHHHhhhee
Confidence 3444444444333
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.62 E-value=2.3e+02 Score=13.53 Aligned_cols=10 Identities=0% Similarity=-0.018 Sum_probs=5.0
Q ss_pred HHHHHhcCcc
Q 022226 235 MGVTLLGDTL 244 (300)
Q Consensus 235 ~~~~~l~E~~ 244 (300)
+=.+++.|++
T Consensus 18 ffaiffrepp 27 (30)
T d2axtt1 18 FFAIFFREPP 27 (30)
T ss_dssp HHHHHTSCCC
T ss_pred HHHHHhcCCC
Confidence 3344556654
No 9
>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]}
Probab=3.71 E-value=1.4e+02 Score=22.21 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=14.6
Q ss_pred ccccccCCCCCccccchhhhc
Q 022226 278 IDSLKSSSPKAPLLQTKSIFC 298 (300)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~ 298 (300)
+.....=+|+.+.|++++|++
T Consensus 83 ~~~lI~V~P~~RvPRty~rF~ 103 (204)
T d3bbda1 83 DDKVLKINPETRLPRNYFRFL 103 (204)
T ss_dssp TSEEEEECTTCCCCSSHHHHH
T ss_pred CCEEEEECCCCcCCCCHHHHH
Confidence 333444567788999998875
No 10
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.52 E-value=57 Score=22.74 Aligned_cols=10 Identities=20% Similarity=0.099 Sum_probs=4.4
Q ss_pred hhhhhHHHHh
Q 022226 247 GSVVGATIVA 256 (300)
Q Consensus 247 ~~~iG~~lil 256 (300)
+.+.++++++
T Consensus 7 ya~~~~iL~l 16 (139)
T d2h8aa1 7 FTSYATIILA 16 (139)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3344444444
Done!