BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022228
(300 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356536322|ref|XP_003536688.1| PREDICTED: putative DNA repair protein RAD23-3-like [Glycine max]
Length = 408
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/316 (63%), Positives = 232/316 (73%), Gaps = 21/316 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DTV +VK IETVQG+DVYPAAQQMLI+QGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP-TKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKV EN+F+VIML+K+K P+GEGST STAP TKAPQ+S PA+TP +
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTST-VPASTPPASVVPQASAPAP 119
Query: 121 PTPAPTPAPASASVS------------------SVSATSESGVYGHAASNLVAGNNLEGA 162
ASV+ S +A S +YG AASNLVAG+NLEG
Sbjct: 120 APAPAATGALPASVTAPISSPSPAPAPTPAPISSGTAVEGSDIYGQAASNLVAGSNLEGT 179
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
IQQILDMGGG+WDRDTVVRALRAAYNNPERAVEYLY+GIPEQAE VA+ P + Q N
Sbjct: 180 IQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAQVPASAQPTNP 239
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
P PQ QPAPVTS+GPNANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQ
Sbjct: 240 PADAPQTAQPAPVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQ 299
Query: 283 ANPQLF-PCFKSWGNK 297
ANPQ+ P + G +
Sbjct: 300 ANPQILQPMLQELGKQ 315
>gi|225452017|ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera]
gi|296087286|emb|CBI33660.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/299 (68%), Positives = 229/299 (76%), Gaps = 11/299 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IE V G+DVYPAAQQMLI+QGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKA--PQSSAPTPAATPATAPQTAVPIST 119
EN+VAE+SFVVIML+KNK G ST S APT P SS+P + P+TAPQ P+
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQA--PVVA 118
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P P PAPA A S +S+S +YG AASNLVAGNNLE IQQILDMGGG+WDRDTV
Sbjct: 119 LPEVIPEPAPAVAP----SISSDSDIYGQAASNLVAGNNLEVTIQQILDMGGGSWDRDTV 174
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAAYNNPERAVEYLYSGIPEQAE P AR P +G A N PTQ PQ Q V SSG
Sbjct: 175 VRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQAPQGPQ-TTVASSG 233
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
PNANPLDLFPQGLP +GS A+ AG+LDFLRNSPQFQ LRAMVQANPQ+ P + G +
Sbjct: 234 PNANPLDLFPQGLPSMGSNAS-AGTLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQ 291
>gi|356575534|ref|XP_003555895.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 1
[Glycine max]
Length = 402
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/314 (64%), Positives = 231/314 (73%), Gaps = 23/314 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DTV +VK IETVQG+DVYPAAQQMLI+QGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTA-PTKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKVAEN+F+VIML+K+K +GEGST STA TKAPQ+S PA+ P +V
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTST-----VPASTPPVSVAPQAP 115
Query: 121 PTPAPTPAPASASVSSV----------------SATSESGVYGHAASNLVAGNNLEGAIQ 164
A PAS + +A S +YG AASNLVAG+NLEG IQ
Sbjct: 116 APAATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQ 175
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
QILDMGGG+WDRDTVVRALRAAYNNPERAVEYLY+GIPEQAE VARAP + Q N P
Sbjct: 176 QILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPA 235
Query: 225 QMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
PQ QPA VTS+GPNANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQAN
Sbjct: 236 DAPQTAQPAAVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQAN 295
Query: 285 PQLF-PCFKSWGNK 297
PQ+ P + G +
Sbjct: 296 PQILQPMLQELGKQ 309
>gi|356575536|ref|XP_003555896.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 2
[Glycine max]
Length = 399
Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 198/314 (63%), Positives = 225/314 (71%), Gaps = 26/314 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DTV +VK IETVQG+DVYPAAQQMLI+QGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTA-PTKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKVAEN+F+VIML+K+K +GEGST STA TKAPQ+S PA+ P +V
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTST-----VPASTPPVSVAPQAP 115
Query: 121 PTPAPTPAPASASVSSV----------------SATSESGVYGHAASNLVAGNNLEGAIQ 164
A PAS + +A S +YG AASNLVAG+NLEG IQ
Sbjct: 116 APAATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQ 175
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
QILDMGGG+WDRDTVVRALRAAYNNPERAVEYLY+GIPEQAE VARAP + Q N P
Sbjct: 176 QILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPA 235
Query: 225 QMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
PQ QPA VTS+GPNANPLDLFPQ SGAAGAGSLDFLRNS QFQ LRAMVQAN
Sbjct: 236 DAPQTAQPAAVTSAGPNANPLDLFPQ---VAISGAAGAGSLDFLRNSQQFQALRAMVQAN 292
Query: 285 PQLF-PCFKSWGNK 297
PQ+ P + G +
Sbjct: 293 PQILQPMLQELGKQ 306
>gi|225423953|ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 359 bits (922), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 211/309 (68%), Positives = 233/309 (75%), Gaps = 17/309 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F+++VKPEDTV DVK IE VQGSDVYPA+QQMLI+QGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQGKVLKDGTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPT------------PAATPAT 109
ENKVAENSFVV+ML+KNK + EGST STAP AP + + T
Sbjct: 61 ENKVAENSFVVVMLSKNKN-SSEGSTASTAPAPAPAPAPTPIVKAPSASAPPPTTTSTLT 119
Query: 110 APQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDM 169
APQ V P P PAPA+ S+V+ SE+ YG AASNLVAGNN E AIQQILDM
Sbjct: 120 APQAPVVALPPPATVPAPAPAATPASTVTVVSETDAYGQAASNLVAGNNFEEAIQQILDM 179
Query: 170 GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQP 229
GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV PVARAP +GQAAN P Q QP
Sbjct: 180 GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARAPASGQAANPPAQSQQP 239
Query: 230 TQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF- 288
PAP SSGPNANPLDLFPQG+P+VGS AGAG+LDFLRNS QFQ LRAMVQANPQ+
Sbjct: 240 V-PAP--SSGPNANPLDLFPQGIPNVGSNPAGAGTLDFLRNSQQFQALRAMVQANPQILQ 296
Query: 289 PCFKSWGNK 297
P + G +
Sbjct: 297 PMLQELGKQ 305
>gi|363807216|ref|NP_001242098.1| uncharacterized protein LOC100813881 [Glycine max]
gi|255641670|gb|ACU21107.1| unknown [Glycine max]
Length = 400
Score = 359 bits (922), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 206/312 (66%), Positives = 232/312 (74%), Gaps = 20/312 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P DT+ +VK IETVQG+DVYPAAQQMLI+QGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST-- 119
ENKVAE+SF+VIML+K K +GEGST STAP+ P S+ PT + +TAPQ P ST
Sbjct: 61 ENKVAESSFIVIMLSKTKSSSGEGSTTSTAPSAKP-SATPTSTSV-STAPQA--PASTGA 116
Query: 120 -------------EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQI 166
PAPA A + S S+ ES +YG AASNLVAG+NLEG IQQI
Sbjct: 117 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSGSSVPESDIYGQAASNLVAGSNLEGTIQQI 176
Query: 167 LDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQM 226
LDMGGG+WDRDTVVR LRAAYNNPERAVEYLYSGIPEQAE PV P + Q +N P
Sbjct: 177 LDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEAPPVTGVPASAQPSNPPADT 236
Query: 227 PQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQ 286
PQ QPA V SSGPNANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQANPQ
Sbjct: 237 PQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQ 296
Query: 287 LF-PCFKSWGNK 297
+ P + G +
Sbjct: 297 ILQPMLQELGKQ 308
>gi|255636381|gb|ACU18529.1| unknown [Glycine max]
Length = 382
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 197/298 (66%), Positives = 223/298 (74%), Gaps = 10/298 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P DT+ +VK IETVQG+DVYPAAQQMLI+QGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 62 ENKVAENSFVVIMLTK-NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKVAE+SF+VIML+K + PT ST+ + APQ+ A T A+ TA
Sbjct: 61 ENKVAESSFIVIMLSKPSATPT------STSVSTAPQAPASTGASATPVTAPTAA--PAP 112
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
PAPA A + S S+ ES +YG AASNLVAG+NLEG IQQILDMGGG+WDRDTVV
Sbjct: 113 APAPAAPAPAPAPIFSGSSVPESDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVV 172
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
R LRAAYNNPERAVEYLYSGIPEQAE PV P + Q +N P PQ QPA V SSGP
Sbjct: 173 RTLRAAYNNPERAVEYLYSGIPEQAEALPVTGVPASAQPSNPPADTPQAAQPASVPSSGP 232
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
NANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 233 NANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQ 290
>gi|356575538|ref|XP_003555897.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 3
[Glycine max]
Length = 381
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 189/298 (63%), Positives = 216/298 (72%), Gaps = 12/298 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DTV +VK IETVQG+DVYPAAQQMLI+QGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKVAEN+F+VIML+K ST P P S A PA ++
Sbjct: 61 ENKVAENTFIVIMLSKT----------STVPASTPPVSVAPQAPAPAATGALPASVTAPV 110
Query: 122 TPAPTPAPASASVSSV-SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+ + + S +A S +YG AASNLVAG+NLEG IQQILDMGGG+WDRDTVV
Sbjct: 111 SSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVV 170
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRAAYNNPERAVEYLY+GIPEQAE VARAP + Q N P PQ QPA VTS+GP
Sbjct: 171 RALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAPQTAQPAAVTSAGP 230
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
NANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 231 NANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQ 288
>gi|225452019|ref|XP_002283661.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 2 [Vitis
vinifera]
Length = 361
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 196/300 (65%), Positives = 219/300 (73%), Gaps = 15/300 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IE V G+DVYPAAQQMLI+QGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKA--PQSSAPTPAATPATAPQTAVPIST 119
EN+VAE+SFVVIML+KNK G ST S APT P SS+P + P+TAPQ P+
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQA--PVVA 118
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P P PAPA A S +S+S +YG AASNLVAGNNLE IQQILDMGGG+WDRDTV
Sbjct: 119 LPEVIPEPAPAVAP----SISSDSDIYGQAASNLVAGNNLEVTIQQILDMGGGSWDRDTV 174
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAAYNNPERAVEYLYSGIPEQAE P AR P +G A N PTQ PQ Q V SSG
Sbjct: 175 VRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQAPQGPQ-TTVASSG 233
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCFKSWGNKIL 299
PNANPLDLFPQGLP +GS A+ AG+LDFLRNSPQ + + NP L + L
Sbjct: 234 PNANPLDLFPQGLPSMGSNAS-AGTLDFLRNSPQ-----ELGKQNPHLMRLIQEHQADFL 287
>gi|358248820|ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 211/304 (69%), Positives = 233/304 (76%), Gaps = 12/304 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P DT+ +VK IETVQG+DVYPAAQQMLI+QGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST-- 119
ENKVAENSF+VIML+K K +GEGST STAP+ S+ PT + A APQ P ST
Sbjct: 61 ENKVAENSFIVIMLSKTKSSSGEGSTTSTAPS-VKASATPTSTSVSA-APQA--PASTGA 116
Query: 120 -----EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
AP A A A +SS SA ES +YG AASNLVAG+NLEG IQQILDMGGG+W
Sbjct: 117 TPTPVTAPAAPASAAAPAPISSGSAVPESDIYGQAASNLVAGSNLEGTIQQILDMGGGSW 176
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
DRDTVVRALRAAYNNPERAVEYLYSGIPEQAE PV R P + Q AN P PQ QPA
Sbjct: 177 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTREPASAQPANPPAAAPQAAQPAS 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKS 293
V SSGPNANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQANPQ+ P +
Sbjct: 237 VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQE 296
Query: 294 WGNK 297
G +
Sbjct: 297 LGKQ 300
>gi|255551362|ref|XP_002516727.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223544100|gb|EEF45625.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 381
Score = 346 bits (888), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 188/301 (62%), Positives = 218/301 (72%), Gaps = 16/301 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT+F+++VKPEDTV DVK IE QG+DVYPA+QQMLI+QGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTNFEIDVKPEDTVEDVKNNIEIAQGADVYPASQQMLIHQGKVLKDGTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP--TKAPQSSAPTPAATPATAPQTAVPIST 119
ENKVAENSF+VIML+K K GST S+AP P S+ P A P+T Q +
Sbjct: 61 ENKVAENSFIVIMLSKRKVSPSGGSTASSAPPSQAQPASTLPPSATQPSTTAQAPAVTAE 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P A P VSS E+ +YG AASNLVAG+NLE +QQILDMGGG+WDR+TV
Sbjct: 121 LPQSAAESTPVVNPVSS-----ETDIYGQAASNLVAGSNLEATVQQILDMGGGSWDRETV 175
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT--QPAPVTS 237
RALRAA+NNPERAVEYLYSGIPEQ EVQP+ RAP +GQAA +P T +PA TS
Sbjct: 176 ARALRAAFNNPERAVEYLYSGIPEQPEVQPLPRAPSSGQAA-----IPSATAQEPAAPTS 230
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGN 296
G NANPLDLFPQGLP +GS AG+LDFLRNS QFQ LRAMVQANPQ+ P + G
Sbjct: 231 GGANANPLDLFPQGLPTIGS-TTSAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGK 289
Query: 297 K 297
+
Sbjct: 290 Q 290
>gi|77999269|gb|ABB16981.1| unknown [Solanum tuberosum]
Length = 382
Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 189/298 (63%), Positives = 215/298 (72%), Gaps = 9/298 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IETVQG DVYPAAQQMLI GKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIPPGKVLKDPTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQ-TAVPISTE 120
ENKVAENSFVVIML+KNK T S AP+ + Q + T T APQ TA ++
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSNSAQPATSTGQPTQTVAPQATAASVAPA 120
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+ + + + +A + VYG AASNLVAG+ LE +QQILDMGGG+W+RDTVV
Sbjct: 121 QSAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQILDMGGGSWERDTVV 180
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRAAYNNPERA+EYLYSGIPEQAE+ P AP +GQA N P Q QP P S GP
Sbjct: 181 RALRAAYNNPERAIEYLYSGIPEQAEIPPA--APASGQAVNPPVQASQPAVP----SGGP 234
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
NANPLDLFPQGLP+VGS GAG+LDFL NSPQFQ LRAMVQANPQ+ P + G +
Sbjct: 235 NANPLDLFPQGLPNVGSN-VGAGNLDFLSNSPQFQALRAMVQANPQILQPMLQELGKQ 291
>gi|224127650|ref|XP_002329330.1| predicted protein [Populus trichocarpa]
gi|222870784|gb|EEF07915.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 189/298 (63%), Positives = 223/298 (74%), Gaps = 7/298 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVF-DVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
MK+FVKTLKGT+F++EVKPEDTV +VK IE VQG+DVYPAAQQMLIYQGKVLKDDTTL
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVVVEVKKNIENVQGADVYPAAQQMLIYQGKVLKDDTTL 60
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+E+KVAENSF+V+ML+K+K +G ST + AP T A P T +A P S+
Sbjct: 61 DESKVAENSFIVVMLSKSKVSSGGPSTATAAPPNVSSGGPSTATAAPPTLV-SAQPTSSL 119
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P+ P+ S + +A S++ +YG AASNLVAG+NLE IQQILDMGGG+W+R+TVV
Sbjct: 120 PSNVTQPSSTSQAAVPAAAFSDADMYGQAASNLVAGSNLEATIQQILDMGGGSWNRETVV 179
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRAA+NNPERAVEYLYSGIPEQAEV PVA+ P +G A N P Q QPA S GP
Sbjct: 180 RALRAAFNNPERAVEYLYSGIPEQAEVPPVAQGPASGVAVNPPAQA---QQPAAPPSGGP 236
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
NANPLDLFPQGLP GS AGAG+LDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 237 NANPLDLFPQGLPSTGSN-AGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQ 293
>gi|255576447|ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 409
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 216/317 (68%), Positives = 232/317 (73%), Gaps = 21/317 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT+FDVEVKPEDT+ DVK IET QG+DVYPA QQMLIYQGKVLKD+TT++
Sbjct: 1 MKIFVKTLKGTTFDVEVKPEDTIADVKKSIETTQGADVYPAGQQMLIYQGKVLKDNTTID 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT-KAPQSSAPTPAATPA------------ 108
ENKVAENSFVVIMLTKNK TGEGST STA T KAPQ+ P A PA
Sbjct: 61 ENKVAENSFVVIMLTKNKSSTGEGSTASTASTTKAPQTIIPATIAPPAPVPTSALPAPAP 120
Query: 109 ---TAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQ 165
A A + P P P APA A S A + VYG AASNLVAGNNLEGAIQQ
Sbjct: 121 APTPAAAPAPAAAPAPAPTPAAAPAPAPAPSAIAAQQGDVYGQAASNLVAGNNLEGAIQQ 180
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV PVA +GQAAN P Q
Sbjct: 181 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVAPVSLSGQAANQPAQ 240
Query: 226 MPQPTQPAPVTSSGPNANPLDLFPQGLPDV----GSGAAGAGSLDFLRNSPQFQVLRAMV 281
QP QPA V S GPNANPLDLFPQGLP++ AGAG+LDFLRNS QFQ LRAMV
Sbjct: 241 PQQPAQPAAVPSGGPNANPLDLFPQGLPNMGSGGAGAGAGAGTLDFLRNSQQFQALRAMV 300
Query: 282 QANPQLF-PCFKSWGNK 297
QANPQ+ P + G +
Sbjct: 301 QANPQILQPMLQELGKQ 317
>gi|224111696|ref|XP_002315945.1| predicted protein [Populus trichocarpa]
gi|222864985|gb|EEF02116.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 202/298 (67%), Positives = 224/298 (75%), Gaps = 14/298 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKG++FD+EVKP DTV DVK IET QG+ VYPA QQMLIYQGKVLKDDTTL
Sbjct: 1 MKIFVKTLKGSTFDIEVKPGDTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLG 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKVAENSFVVIML+K K +GEGST S APT P P + P A + P
Sbjct: 61 ENKVAENSFVVIMLSKAKSSSGEGSTTSAAPT-------PKVITLPTSVPSPAPAPAPAP 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PAP + SS S +SGVYG AASNLVAGNNLEGA+QQILDMGGG+WDRDTVVR
Sbjct: 114 APAPR---SGFCSSSSSGFFKSGVYGQAASNLVAGNNLEGAVQQILDMGGGSWDRDTVVR 170
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQA-ANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERAVEYLY+GIPEQAE PVA+ P + QA A P Q QP QP V + GP
Sbjct: 171 ALRAAYNNPERAVEYLYTGIPEQAEAPPVAQVPVSEQAPAAQPRQ--QPAQPTTVPAGGP 228
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
NANPLDLFPQGLP++GSGAA AG+LDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 229 NANPLDLFPQGLPNIGSGAAEAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQ 286
>gi|15232924|ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName: Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana]
gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735092|gb|ABG89116.1| Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/329 (58%), Positives = 227/329 (68%), Gaps = 39/329 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS--- 118
ENKVAENSF+VIM+ K+K + S+ S ++A S P + P+ +PQT +S
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQA--KSIPPSTSQPSISPQTPASVSAPV 118
Query: 119 -----------------------TEPTPAPTPAPASASVS-----SVSATSESGVYGHAA 150
T TP P P PA+ S S S S+ VYG AA
Sbjct: 119 APAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAA 178
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
SNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PV
Sbjct: 179 SNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPV 238
Query: 211 ARAPGN-GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
AR P + GQ AN P Q QPA +SGPNANPLDLFPQGLP+VG G GAG+LDFLR
Sbjct: 239 ARPPASAGQPANPPAQT---QQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLR 294
Query: 270 NSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
NS QFQ LRAMVQANPQ+ P + G +
Sbjct: 295 NSQQFQALRAMVQANPQVLQPMLQELGKQ 323
>gi|334185033|ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 193/328 (58%), Positives = 228/328 (69%), Gaps = 38/328 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS--- 118
ENKVAENSF+VIM+ K+K + S+ S ++A S P + P+ +PQT +S
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQA--KSIPPSTSQPSISPQTPASVSAPV 118
Query: 119 -----------------------TEPTPAPTPAPASASVSSVSATS----ESGVYGHAAS 151
T TP P P PA+ S S+ + S + VYG AAS
Sbjct: 119 APAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGQGDVYGQAAS 178
Query: 152 NLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA 211
NL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVA
Sbjct: 179 NLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVA 238
Query: 212 RAPGN-GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRN 270
R P + GQ AN P Q QPA +SGPNANPLDLFPQGLP+VG G GAG+LDFLRN
Sbjct: 239 RPPASAGQPANPPAQT---QQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRN 294
Query: 271 SPQFQVLRAMVQANPQLF-PCFKSWGNK 297
S QFQ LRAMVQANPQ+ P + G +
Sbjct: 295 SQQFQALRAMVQANPQVLQPMLQELGKQ 322
>gi|297832888|ref|XP_002884326.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
gi|297330166|gb|EFH60585.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 230/327 (70%), Gaps = 37/327 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVK ED+V DVK IETVQG+DVYPAA+QMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKLEDSVADVKKNIETVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPI---- 117
ENKVAENSF+V+ML K+K P G++ ++A T +S+ P+ + P+ +PQT +
Sbjct: 61 ENKVAENSFIVVMLNKSK-PASTGASSASAGTSQAKSTPPS-TSQPSISPQTPASVAAPV 118
Query: 118 --------------------STEPTPAPTPAPASASVS-----SVSATSESGVYGHAASN 152
T TP P P PA+ S S A S+ VYG AASN
Sbjct: 119 APAPTRAPPPAPTPAPVAATETVTTPIPEPVPATIPSSTPAPDSAPAGSQGDVYGQAASN 178
Query: 153 LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
L AG+NLE IQQILDMGGGTWDR+TVVRALRAA+NNPERAVEYLY+GIPEQAEV PVAR
Sbjct: 179 LAAGSNLESTIQQILDMGGGTWDRETVVRALRAAFNNPERAVEYLYTGIPEQAEVPPVAR 238
Query: 213 APGN-GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNS 271
AP + GQ AN Q QPA +SGPNANPLDLFPQGLP+VG G GAG+LDFLRNS
Sbjct: 239 APASFGQPANPSAQT---QQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNS 294
Query: 272 PQFQVLRAMVQANPQLF-PCFKSWGNK 297
QFQ LRAMVQANPQ+ P + G +
Sbjct: 295 QQFQALRAMVQANPQVLQPMLQELGKQ 321
>gi|449530301|ref|XP_004172134.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 336 bits (862), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 194/337 (57%), Positives = 226/337 (67%), Gaps = 52/337 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKG+ F++EV+P DTV DVK IETVQG+DVYPAAQQMLI+QGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP--TKAPQSSAPTPAATPATAPQTAVPIST 119
ENKVAENSF+VIMLTKNK +G S+ + A KAPQS+AP PAAT P+ST
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKAPQSTAPAPAAT---------PVST 111
Query: 120 EPTPAPTPAPASASVS-------------------------------------SVSATSE 142
P PT AP ASV+ + + +
Sbjct: 112 TEVPLPTSAP-PASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPD 170
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
+ VY AASNLVAG+NLE +QQILDMG G WDRDTVVRALRAAYNNPERAV+YLYSGIP
Sbjct: 171 ADVYSQAASNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIP 230
Query: 203 EQAEVQPVARAPGNGQAAN-SPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAG 261
EQ E P AR P QA+N S + +S+GPNANPLDLFPQGLP++GSGA G
Sbjct: 231 EQVEAPP-ARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVG 289
Query: 262 AGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
+GSLDFLRNSPQFQ LRAMV+ANPQ+ P + G +
Sbjct: 290 SGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQ 326
>gi|449434628|ref|XP_004135098.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 336 bits (861), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 194/337 (57%), Positives = 226/337 (67%), Gaps = 52/337 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKG+ F++EV+P DTV DVK IETVQG+DVYPAAQQMLI+QGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP--TKAPQSSAPTPAATPATAPQTAVPIST 119
ENKVAENSF+VIMLTKNK +G S+ + A KAPQS+AP PAAT P+ST
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKAPQSTAPAPAAT---------PVST 111
Query: 120 EPTPAPTPAPASASVS-------------------------------------SVSATSE 142
P PT AP ASV+ + + +
Sbjct: 112 TEVPLPTSAP-PASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPD 170
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
+ VY AASNLVAG+NLE +QQILDMG G WDRDTVVRALRAAYNNPERAV+YLYSGIP
Sbjct: 171 ADVYSQAASNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIP 230
Query: 203 EQAEVQPVARAPGNGQAAN-SPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAG 261
EQ E P AR P QA+N S + +S+GPNANPLDLFPQGLP++GSGA G
Sbjct: 231 EQVEAPP-ARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVG 289
Query: 262 AGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
+GSLDFLRNSPQFQ LRAMV+ANPQ+ P + G +
Sbjct: 290 SGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQ 326
>gi|77745475|gb|ABB02636.1| RAD23-like [Solanum tuberosum]
Length = 384
Score = 336 bits (861), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 186/300 (62%), Positives = 213/300 (71%), Gaps = 11/300 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IETVQG DVYPAAQQMLI+Q KVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIHQVKVLKDPTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQ---TAVPIS 118
ENKVAENSFVVIML+KNK T S AP+ + Q + T T APQ +V +
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSNSAQPATSTGQPTQTVAPQATAASVAPA 120
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
+ + + +A + VYG AASNLVAG+ LE +QQILDMGGG+W+RDT
Sbjct: 121 QSAPAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQILDMGGGSWERDT 180
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
VVRALRAAYNNPERA+EYLYSGIPEQAE+ P AP +GQA N P Q P P S
Sbjct: 181 VVRALRAAYNNPERAIEYLYSGIPEQAEIPPA--APVSGQAVNPPVQASPPAVP----SG 234
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
GPNANPLDLFPQGLP+VGS GAG+LDFL NSPQFQ LRAMVQANPQ+ P + G +
Sbjct: 235 GPNANPLDLFPQGLPNVGSN-VGAGNLDFLSNSPQFQALRAMVQANPQILQPMLQELGKQ 293
>gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 190/300 (63%), Positives = 225/300 (75%), Gaps = 8/300 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI+VKTLKG+ F+++V P+D+V DVK IET QG+ VYPAAQQMLIYQGKVLKD TTL
Sbjct: 1 MKIYVKTLKGSQFEIQVNPDDSVADVKRSIETAQGAAVYPAAQQMLIYQGKVLKDGTTLL 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT-KAPQSSAPTPAATPATA--PQTAVPIS 118
EN VAENSF+VIML+K+K P+GEGST STA KAPQ+SAP PA + P + +P+
Sbjct: 61 ENNVAENSFIVIMLSKSKSPSGEGSTTSTAAAPKAPQTSAPPSVPAPAVSQPPASTLPVP 120
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
A+A + S + SE+ VY AAS LVAG+NLEGAIQQILDMGGGTWDRDT
Sbjct: 121 APSPAPAP---ATAPIPSAAVGSEANVYDSAASLLVAGSNLEGAIQQILDMGGGTWDRDT 177
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V+R +RAA+NNPERAVEYLYSGIPEQAE PVA +P +GQAAN P P S+
Sbjct: 178 VIRIVRAAFNNPERAVEYLYSGIPEQAEAPPVAPSPPSGQAAN-PLDQPPAAAQPAPASA 236
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
GPNANPLDLFPQGLPD+GS AAGAG+LDFLR + QFQ LRAMVQ+NPQ+ P + G +
Sbjct: 237 GPNANPLDLFPQGLPDMGSNAAGAGNLDFLRTNQQFQALRAMVQSNPQILQPMLQELGKQ 296
>gi|90657579|gb|ABD96879.1| hypothetical protein [Cleome spinosa]
Length = 383
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 185/300 (61%), Positives = 221/300 (73%), Gaps = 14/300 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IETVQG+DVYP+AQQMLI+QGKVL+D+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQGADVYPSAQQMLIHQGKVLRDETTME 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP---TKAPQSSAPTPAATPATAPQTAVPIS 118
ENKVAE SF+VIML+K+ +P + + T+AP AP + P+T+PQT P++
Sbjct: 61 ENKVAEKSFIVIMLSKSSKPASSSGASTASAAPTTQAP--PAPLASTQPSTSPQTPAPVA 118
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T + +V +++ +YG AASNLVAG+NLE IQQILDMGGG+WDRDT
Sbjct: 119 MPQAAPETAPAPAPAV------TQTDIYGQAASNLVAGSNLEATIQQILDMGGGSWDRDT 172
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
VVRALRAAYNNPERAVEYLYSGIPEQAEV PVA+AP +G +P A T S
Sbjct: 173 VVRALRAAYNNPERAVEYLYSGIPEQAEVPPVAQAPASGGQPTNPPAQAGQQPAAAPT-S 231
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
GPNANPLDLFPQGLP+VGS GAG+LDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 232 GPNANPLDLFPQGLPNVGSN-TGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQ 290
>gi|224079274|ref|XP_002305813.1| predicted protein [Populus trichocarpa]
gi|222848777|gb|EEE86324.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 182/302 (60%), Positives = 220/302 (72%), Gaps = 14/302 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT+F++EVKPEDTV DVK IE+VQG+DVYPAAQQML+YQGKVLKDDTTL+
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA--PTPAATPATAPQTAVPIST 119
ENKV+E+SF V+ML+K+K +G ST AP ++ P+ P+ Q VP +
Sbjct: 61 ENKVSESSFFVVMLSKSKVSSGGPSTAPAAPASQAPPASSLPSNVTQPSITSQAPVPAAA 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P A +PA + SA ++ +YG AASNLVAG+NLE IQ+ILDMGGG W+R+TV
Sbjct: 121 LPQSAAESSPAVVT----SALLDTNMYGQAASNLVAGSNLEATIQEILDMGGGDWNRETV 176
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARA---PGNGQAANSPTQMPQPTQPAPVT 236
VRALRAA+NNPERA++YLYSGIPEQAEV PVA+ P +G A N P PQP AP
Sbjct: 177 VRALRAAFNNPERAIDYLYSGIPEQAEVPPVAQVVQGPASGNAVNPPALAPQPV-VAP-- 233
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWG 295
+SGPNANPLDLFPQG GS AG G+LDFLRNS QFQ LRAMVQANPQ+ P + G
Sbjct: 234 NSGPNANPLDLFPQGHHSTGSN-AGTGNLDFLRNSQQFQALRAMVQANPQILQPMLQELG 292
Query: 296 NK 297
+
Sbjct: 293 KQ 294
>gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
Length = 389
Score = 323 bits (827), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 190/310 (61%), Positives = 217/310 (70%), Gaps = 26/310 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG DVYPAAQQMLI+QGKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKVAENSFVVIML+KNK S+ T+ A S+ P + A QT I+T
Sbjct: 61 ENKVAENSFVVIMLSKNKV-----SSTGTSSISAALSNTAQPDGSTDQARQT---ITTPQ 112
Query: 122 TPAPTPAPAS-----ASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
A P AS + +A+S + VY AASNLVAG+NLE +QQILDMGGG+WDR
Sbjct: 113 ATAALPQSASESAPTPAPVPAAASSVTDVYDQAASNLVAGSNLETTVQQILDMGGGSWDR 172
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEV--------QPVARAPGNGQAANSPTQMPQ 228
DTVVRALRAAYNNPERAV+YLYSGIPEQ E+ P AP + QA N Q
Sbjct: 173 DTVVRALRAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPASAQAINPAAQ--D 230
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
+Q A V SSGPNANPLDLFPQGL + GS AGAG+LDFLRNSPQFQ LRAMVQANPQ+
Sbjct: 231 ASQLA-VPSSGPNANPLDLFPQGLTNAGSN-AGAGNLDFLRNSPQFQALRAMVQANPQIL 288
Query: 289 -PCFKSWGNK 297
P + G +
Sbjct: 289 QPMLQELGKQ 298
>gi|42572233|ref|NP_974211.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640304|gb|AEE73825.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 299
Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 180/305 (59%), Positives = 210/305 (68%), Gaps = 38/305 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS--- 118
ENKVAENSF+VIM+ K+K + S+ S ++A S P + P+ +PQT +S
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQA--KSIPPSTSQPSISPQTPASVSAPV 118
Query: 119 -----------------------TEPTPAPTPAPASASVS-----SVSATSESGVYGHAA 150
T TP P P PA+ S S S S+ VYG AA
Sbjct: 119 APAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAA 178
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
SNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PV
Sbjct: 179 SNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPV 238
Query: 211 ARAPGN-GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
AR P + GQ AN P Q QPA +SGPNANPLDLFPQGLP+VG G GAG+LDFLR
Sbjct: 239 ARPPASAGQPANPPAQT---QQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLR 294
Query: 270 NSPQF 274
NS Q
Sbjct: 295 NSQQV 299
>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 178/299 (59%), Positives = 217/299 (72%), Gaps = 16/299 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPIST 119
EN V ENSF+VIML+K K P+G STA AP ++ P ATP +AP +VP+
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSG----ASTASAPAPSATQPQTVATPQVSAPTASVPV-- 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT A+A+ + +A+ ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTV
Sbjct: 114 -----PTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTV 168
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A +P PQ + G
Sbjct: 169 VRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGG 228
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
PNANPL+LFPQG+P AGAG+LDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 229 PNANPLNLFPQGMPAA-DAGAGAGNLDFLRNSHQFQALRAMVQANPQILQPMLQELGKQ 286
>gi|15240922|ref|NP_198663.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|55976502|sp|Q84L30.2|RD23D_ARATH RecName: Full=Putative DNA repair protein RAD23-4; AltName:
Full=RAD23-like protein 4; Short=AtRAD23-4
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana]
gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana]
gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735094|gb|ABG89117.1| Rad23-2 [synthetic construct]
gi|332006938|gb|AED94321.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 378
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 178/299 (59%), Positives = 217/299 (72%), Gaps = 16/299 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPIST 119
EN V ENSF+VIML+K K P+G STA AP ++ P ATP +AP +VP+
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSG----ASTASAPAPSATQPQTVATPQVSAPTASVPV-- 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT A+A+ + +A+ ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTV
Sbjct: 114 -----PTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTV 168
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A +P PQ + G
Sbjct: 169 VRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGG 228
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
PNANPL+LFPQG+P AGAG+LDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 229 PNANPLNLFPQGMPAA-DAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQ 286
>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana]
Length = 343
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 176/289 (60%), Positives = 213/289 (73%), Gaps = 15/289 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPIST 119
EN V ENSF+VIML+K K P+G STA AP ++ P ATP +AP +VP+
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSG----ASTASAPAPSATQPQTVATPQVSAPTASVPV-- 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT A+A+ + +A+ ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTV
Sbjct: 114 -----PTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTV 168
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A +P PQ + G
Sbjct: 169 VRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGG 228
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
PNANPL+LFPQG+P AGAG+LDFLRNS QFQ LRAMVQANPQ+
Sbjct: 229 PNANPLNLFPQGMPAA-DAGAGAGNLDFLRNSQQFQALRAMVQANPQIL 276
>gi|145334669|ref|NP_001078680.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|332006939|gb|AED94322.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 332
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 178/299 (59%), Positives = 217/299 (72%), Gaps = 16/299 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPIST 119
EN V ENSF+VIML+K K P+G STA AP ++ P ATP +AP +VP+
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGA----STASAPAPSATQPQTVATPQVSAPTASVPV-- 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT A+A+ + +A+ ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTV
Sbjct: 114 -----PTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTV 168
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A +P PQ + G
Sbjct: 169 VRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGG 228
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
PNANPL+LFPQG+P AGAG+LDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 229 PNANPLNLFPQGMPAA-DAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQ 286
>gi|388499022|gb|AFK37577.1| unknown [Lotus japonicus]
Length = 376
Score = 303 bits (775), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 173/302 (57%), Positives = 211/302 (69%), Gaps = 19/302 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKGT F ++V +D+V DVK IE QG+ VYPAAQQMLI+QGKVLKDDTTLE
Sbjct: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKA-----PQSSAPTPAATPATAPQTAVP 116
EN VAE+SFVVIML+KNK + ST + AP P SS P ++TP
Sbjct: 61 ENNVAEDSFVVIMLSKNKVSSSGASTAAAAPPNPVTAPQPASSVPPTSSTPEPPTSAVGQ 120
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
++ +P P +A+VSSV YG AASNL+AG+N++ +QQIL+MGGG+WDR
Sbjct: 121 GASNSEQSPVITPPTAAVSSV--------YGQAASNLIAGSNVDPTVQQILEMGGGSWDR 172
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
DTV+RALRAAYNNPERAVEYLYSGIPEQA+V VAR+P GQA N + PQP P
Sbjct: 173 DTVIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVRPPQPAVP---- 228
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWG 295
+ GPN NPL+LFPQG+P++G+ AG LDFLRN+ QFQ LRAMVQANPQ+ P + G
Sbjct: 229 TGGPNTNPLNLFPQGIPNMGA-EDNAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELG 287
Query: 296 NK 297
+
Sbjct: 288 KQ 289
>gi|116787088|gb|ABK24371.1| unknown [Picea sitchensis]
Length = 390
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 161/294 (54%), Positives = 208/294 (70%), Gaps = 10/294 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG F+++ +P DTV VK +IE +QG D YP QQ+LI+QGKVLKDDTT+E
Sbjct: 1 MKLSVKTLKGNRFEIDAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP-QTAVPISTE 120
+N++ EN F+V+MLTK K + G++ +++ + + TP A PA+ P + A P+ ++
Sbjct: 61 DNQITENGFLVVMLTKTKTSSAAGASSTSSASTIQHTQTSTPLA-PASNPVEAASPVVSQ 119
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P PA PA + ++ + + + + YG AAS LVAG+NLE IQQ+LDMGGG+WDRDTVV
Sbjct: 120 P-PAVAPATSVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQMLDMGGGSWDRDTVV 178
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAP-----GNGQAANSPTQMPQPTQPAP 234
RALRAAYNNPERAVEYLYSGIPE AE+ PVAR+P GQ N A
Sbjct: 179 RALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNSGAAGQGTNDVVAAESDLAQAT 238
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
V S GPNA PL+LFPQGLP++G+ AG G+LDFLRN+PQFQ LR MVQANPQ+
Sbjct: 239 VPSGGPNAAPLNLFPQGLPNLGA-TAGGGALDFLRNNPQFQALRTMVQANPQIL 291
>gi|115479081|ref|NP_001063134.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|55976306|sp|Q40742.2|RAD23_ORYSJ RecName: Full=Probable DNA repair protein RAD23; AltName:
Full=OsRAD23
gi|51091502|dbj|BAD36240.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|51091558|dbj|BAD36295.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113631367|dbj|BAF25048.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|125563673|gb|EAZ09053.1| hypothetical protein OsI_31314 [Oryza sativa Indica Group]
gi|125605644|gb|EAZ44680.1| hypothetical protein OsJ_29306 [Oryza sativa Japonica Group]
Length = 392
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 173/308 (56%), Positives = 213/308 (69%), Gaps = 25/308 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRST-APTKAPQSSAP-------TPAATPATAPQT 113
ENKV ENSF+VIML + G+GS+ S A +KAP + AP PA+ AP T
Sbjct: 61 ENKVLENSFLVIMLRQ-----GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPAT 115
Query: 114 AVPIS-TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGG 172
VP++ + PTP T +PA A V+ +SE+ YG A SNLVAG+NLE IQ IL+MGGG
Sbjct: 116 TVPVTVSAPTPTATASPAPA----VAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGG 171
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
WDRD V+ AL AA+NNPERAVEYLYSG+PEQ ++ PV P + Q AN PTQ Q TQP
Sbjct: 172 IWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PV--PPPSIQPAN-PTQASQATQP 227
Query: 233 A--PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-P 289
A + SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+ P
Sbjct: 228 AAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQP 287
Query: 290 CFKSWGNK 297
+ G +
Sbjct: 288 LLQELGKQ 295
>gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa Japonica Group]
Length = 392
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 173/308 (56%), Positives = 213/308 (69%), Gaps = 25/308 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRST-APTKAPQSSAP-------TPAATPATAPQT 113
ENKV ENSF+VIML + G+GS+ S A +KAP + AP PA+ AP T
Sbjct: 61 ENKVLENSFLVIMLRQ-----GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPAT 115
Query: 114 AVPIS-TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGG 172
VP++ + PTP T +PA A V+ +SE+ YG A SNLVAG+NLE IQ IL+MGGG
Sbjct: 116 TVPVTVSAPTPTATASPAPA----VAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGG 171
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
WDRD V+ AL AA+NNPERAVEYLYSG+PEQ ++ PV P + Q AN PTQ Q TQP
Sbjct: 172 IWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PV--PPPSIQPAN-PTQASQATQP 227
Query: 233 A--PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-P 289
A + SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+ P
Sbjct: 228 AAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQP 287
Query: 290 CFKSWGNK 297
+ G +
Sbjct: 288 LLQELGKQ 295
>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
Length = 337
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 175/298 (58%), Positives = 197/298 (66%), Gaps = 59/298 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETT-- 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
T +T P P PAT IS+
Sbjct: 59 ------------------------ETVTT----------PIPEPVPAT-------ISSS- 76
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TPAP SA V S + VYG AASNL AG+NLE IQQILDMGGGTWDR+TVV
Sbjct: 77 ----TPAPDSAPVGS-----QGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVL 127
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSPTQMPQPTQPAPVTSSGP 240
ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN P Q QPA +SGP
Sbjct: 128 ALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQT---QQPAAAPASGP 184
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
NANPLDLFPQGLP+VG G GAG+LDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 185 NANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQ 241
>gi|357158333|ref|XP_003578094.1| PREDICTED: probable DNA repair protein RAD23-like isoform 1
[Brachypodium distachyon]
Length = 395
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 167/311 (53%), Positives = 204/311 (65%), Gaps = 28/311 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE+ QG +VYPA QQMLI+QG VLKDDTTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGTVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP---------- 111
E+KV EN+F+VIML +NK S+ + A +K P + AP PA P
Sbjct: 61 ESKVLENNFLVIMLRQNKG----SSSAAPAKSKEPSNQAPPTQTVPANPPSQAPVVPAPP 116
Query: 112 ----QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQIL 167
+ + PTP T +PASA V+ ++E+ YG AASNLVAG NLE IQ IL
Sbjct: 117 AAAAPAPIVPISAPTPTATASPASA----VAVSTEAETYGQAASNLVAGGNLEATIQSIL 172
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
+MGGGTWDRDTV+RALRAA+NNPERAVEYLYSGIPE E+ + P Q
Sbjct: 173 EMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPS----AQPADPVQAL 228
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
Q TQPA V SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+
Sbjct: 229 QATQPA-VASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANPQI 287
Query: 288 F-PCFKSWGNK 297
P + G +
Sbjct: 288 LQPLLQELGKQ 298
>gi|297805910|ref|XP_002870839.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
gi|297316675|gb|EFH47098.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
Length = 377
Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 179/297 (60%), Positives = 212/297 (71%), Gaps = 13/297 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL GT+F++EVKP DTV DVK IETV+G++ YPA +QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGTNFEIEVKPADTVSDVKKAIETVKGAE-YPAVKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
EN V ENSF+VIML+K K + ST S A Q A T AT PQ + P T
Sbjct: 60 ENNVVENSFIVIMLSKTKVSSSGASTASAPAPSATQ------AQTVAT-PQVSAP--TVS 110
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P PT A+A+ + +A ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTVVR
Sbjct: 111 VPEPTSGTATAAAPAAAAAVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVR 170
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ +P PQ P T GPN
Sbjct: 171 ALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPSTGEQPANPQAQPQQAAPVAAT-GGPN 229
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
ANPL+LFPQG+P AAGAG+LDFLRNS +FQ LRAMVQANPQ+ P + G +
Sbjct: 230 ANPLNLFPQGMP-AADAAAGAGNLDFLRNSQKFQALRAMVQANPQILQPMLQELGKQ 285
>gi|413954952|gb|AFW87601.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 399
Score = 289 bits (740), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 175/310 (56%), Positives = 214/310 (69%), Gaps = 15/310 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V DVK IET QG Y A QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT--AVPIST 119
N VAENSF+VIML+K K + ST +TA A + P A A+ +T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPVAT 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
T P+ P +A ++V+AT ++ VY AASNLV+GNNLE IQQILDMGGGTW+RDTV
Sbjct: 121 AETAPPSVQPQAAPAATVAATDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERDTV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAAN----SPTQ--MPQPTQPA 233
VRALRAAYNNPERA++YLYSGIPE E QPVARAP GQ N SP Q + P QP+
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASPAQPAVALPVQPS 240
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
P S+GPNANPL+LFPQG+P GS AG+G+LD LR PQFQ L +VQANPQ+
Sbjct: 241 PA-SAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQALLQLVQANPQIL 299
Query: 289 -PCFKSWGNK 297
P + G +
Sbjct: 300 QPMLQELGKQ 309
>gi|226500270|ref|NP_001142065.1| uncharacterized protein LOC100274222 [Zea mays]
gi|194706976|gb|ACF87572.1| unknown [Zea mays]
gi|413954953|gb|AFW87602.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 175/310 (56%), Positives = 214/310 (69%), Gaps = 15/310 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V DVK IET QG Y A QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT--AVPIST 119
N VAENSF+VIML+K K + ST +TA A + P A A+ +T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPVAT 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
T P+ P +A ++V+AT ++ VY AASNLV+GNNLE IQQILDMGGGTW+RDTV
Sbjct: 121 AETAPPSVQPQAAPAATVAATDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERDTV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAAN----SPTQ--MPQPTQPA 233
VRALRAAYNNPERA++YLYSGIPE E QPVARAP GQ N SP Q + P QP+
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASPAQPAVALPVQPS 240
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
P S+GPNANPL+LFPQG+P GS AG+G+LD LR PQFQ L +VQANPQ+
Sbjct: 241 P-ASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQALLQLVQANPQIL 299
Query: 289 -PCFKSWGNK 297
P + G +
Sbjct: 300 QPMLQELGKQ 309
>gi|357124588|ref|XP_003563980.1| PREDICTED: putative DNA repair protein RAD23-3-like [Brachypodium
distachyon]
Length = 413
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/317 (55%), Positives = 213/317 (67%), Gaps = 21/317 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT+F++E PE +V +VK IE QG +VYPA QQMLI+QGK+LKDDTTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIEGAQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPA--TAPQTAVPIST 119
N VAENSF+VIML+K K ST S APT Q + P AATP+ P P ST
Sbjct: 61 GNNVAENSFLVIMLSKAKASPSGPSTASKAPTIQAQPATPVAAATPSGPATPVARTPPST 120
Query: 120 EPTPAPTPAPASAS--------VSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
P A AP SA ++V+A+ ++ VY AASNLV+G +LE +Q ILDMGG
Sbjct: 121 APVSASELAPPSAQPPAGSDIPAAAVTASGDADVYSQAASNLVSGGSLEQTVQHILDMGG 180
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ--- 228
GTW+RD VVRALRAAYNNPERA++YLYSGIPE E PVARAP Q A +P + Q
Sbjct: 181 GTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAPVQQATNPQALSQAAP 240
Query: 229 --PTQPAPVTSSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMV 281
P QP+ V S+GPNANPL+LFPQG+P GS AGAG+LD LR PQFQ L A+V
Sbjct: 241 VPPVQPSGVASAGPNANPLNLFPQGVPTGGSNPGAGVGAGAGALDALRALPQFQALLALV 300
Query: 282 QANPQLF-PCFKSWGNK 297
QANPQ+ P + G +
Sbjct: 301 QANPQILQPMLQELGKQ 317
>gi|414885361|tpg|DAA61375.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 339
Score = 283 bits (723), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 164/291 (56%), Positives = 197/291 (67%), Gaps = 21/291 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE++Q YPA QQ+LI+QGKVLKDDTTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV----PI 117
EN+V EN+F+VIML +NK GS+ S AP K + AP+ PAT PQT+ P
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSS-SAAPAKVTANQAPSTQTVPATPPQTSAAPDAPA 114
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
P AP +++ +V+ ++E+ YG A SNLVAG+NLEG I+ IL+MGGGTWDRD
Sbjct: 115 PIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRD 174
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
TV+RALRAAYNNPERAVEYLYSGIPEQ EV AP P Q QP Q
Sbjct: 175 TVLRALRAAYNNPERAVEYLYSGIPEQMEV----PAPPPSSQPVDPVQAVQPAQ------ 224
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
+GPNANPLDLFPQ LP+ S A G+LD LRN+ QFQ L +VQANPQ+
Sbjct: 225 AGPNANPLDLFPQSLPN-DSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 274
>gi|195636354|gb|ACG37645.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 283 bits (723), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 172/310 (55%), Positives = 212/310 (68%), Gaps = 15/310 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V DVK IET QG Y A QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT--AVPIST 119
N VAENSF+VIML+K K + ST + A A + P A+ +T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTTTAAKAPATLAQPAAPVPPAASVARTPTQAPVAT 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
T P+ P +A ++V+AT ++ VY AASNLV+GN+LE IQQILDMGGGTW+RDTV
Sbjct: 121 AETAPPSAQPQAAPAATVAATDDADVYSQAASNLVSGNSLEQTIQQILDMGGGTWERDTV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAAN----SPTQ--MPQPTQPA 233
VRALRAAYNNPERA++YLYSGIPE E QPVARAP GQ N SP Q + P QP+
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASPAQPAVALPVQPS 240
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
P S+GPNANPL+LFPQG+P GS AG+G+LD LR PQFQ L +VQANPQ+
Sbjct: 241 P-ASAGPNANPLNLFPQGVPSGGSNPGVIPGAGSGALDALRQLPQFQALLQLVQANPQIL 299
Query: 289 -PCFKSWGNK 297
P + G +
Sbjct: 300 QPMLQELGKQ 309
>gi|197717669|gb|ACH72675.1| RAD23 [Pinus sylvestris var. mongolica]
Length = 390
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 165/297 (55%), Positives = 207/297 (69%), Gaps = 16/297 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG F++E +P DTV VK +IE +QG D YP QQ+LI+QGKVLKDDTT+E
Sbjct: 1 MKLSVKTLKGNRFEIEAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEG-STRSTAPTKAPQ--SSAPTPAATPATAPQTAVPIS 118
+N + EN F+V+MLTK+K + G S+ STA T P S+ P PA+ P + A P+
Sbjct: 61 DNTITENGFLVVMLTKSKTSSAVGASSTSTASTVQPTQTSTPPAPASNPV---EVASPVV 117
Query: 119 TE-PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
++ P AP + ++ ++V A ++ YG AAS LVAG+NLE IQQ+LDMGGG+WDRD
Sbjct: 118 SQLPAVAPAASVSAPETTAVQANADP--YGEAASILVAGSNLEQTIQQMLDMGGGSWDRD 175
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAP-----GNGQAANSPTQMPQPTQ 231
TVVRALRAAYNNPERAVEYLYSGIPE AE+ PVAR+P Q N+ +
Sbjct: 176 TVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNPGATDQGTNNVIAGESDSA 235
Query: 232 PAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
A S GPNA PL+LFPQGLP++ AAG G+LDFLRN+PQFQ LR MVQANPQ+
Sbjct: 236 EATAPSGGPNAAPLNLFPQGLPNL-GAAAGGGALDFLRNNPQFQALRTMVQANPQIL 291
>gi|194700232|gb|ACF84200.1| unknown [Zea mays]
gi|195625372|gb|ACG34516.1| DNA repair protein RAD23 [Zea mays]
gi|414885362|tpg|DAA61376.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 386
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 165/298 (55%), Positives = 198/298 (66%), Gaps = 35/298 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE++Q YPA QQ+LI+QGKVLKDDTTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV----PI 117
EN+V EN+F+VIML +NK GS+ S AP K + AP+ PAT PQT+ P
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSS-SAAPAKVTANQAPSTQTVPATPPQTSAAPDAPA 114
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
P AP +++ +V+ ++E+ YG A SNLVAG+NLEG I+ IL+MGGGTWDRD
Sbjct: 115 PIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRD 174
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEV-------QPVARAPGNGQAANSPTQMPQPT 230
TV+RALRAAYNNPERAVEYLYSGIPEQ EV QPV P Q QP
Sbjct: 175 TVLRALRAAYNNPERAVEYLYSGIPEQMEVPAPPPSSQPV-----------DPVQAVQPA 223
Query: 231 QPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
Q +GPNANPLDLFPQ LP+ S A G+LD LRN+ QFQ L +VQANPQ+
Sbjct: 224 Q------AGPNANPLDLFPQSLPN-DSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 274
>gi|414885365|tpg|DAA61379.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 382
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 163/294 (55%), Positives = 196/294 (66%), Gaps = 31/294 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE++Q YPA QQ+LI+QGKVLKDDTTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
EN+V EN+F+VIML +NK GS+ S AP K + AP+ PAT PQT+
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSS-SAAPAKVTANQAPSTQTVPATPPQTSAAPDAPA 114
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
AP +++ +V+ ++E+ YG A SNLVAG+NLEG I+ IL+MGGGTWDRDTV+R
Sbjct: 115 PIAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRDTVLR 174
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEV-------QPVARAPGNGQAANSPTQMPQPTQPAP 234
ALRAAYNNPERAVEYLYSGIPEQ EV QPV P Q QP Q
Sbjct: 175 ALRAAYNNPERAVEYLYSGIPEQMEVPAPPPSSQPV-----------DPVQAVQPAQ--- 220
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
+GPNANPLDLFPQ LP+ S A G+LD LRN+ QFQ L +VQANPQ+
Sbjct: 221 ---AGPNANPLDLFPQSLPN-DSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 270
>gi|224284592|gb|ACN40029.1| unknown [Picea sitchensis]
Length = 403
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 170/309 (55%), Positives = 204/309 (66%), Gaps = 30/309 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG FD+EV+P DTV +VK +IE VQG+ YP+ QQ+LIYQGKVLKD+TT+E
Sbjct: 1 MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPT-GEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKV EN+F+V+ML+K K T G ST+ +AP S +P PA P A +
Sbjct: 61 ENKVTENTFLVVMLSKTKATTAGTSSTQ-----QAPPSVSPAPAQNPVAPVPAA---AAA 112
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+ PA A+ + + + +++ VYG AASNLVAGNNLE IQQILDMGGG+WDRDTVV
Sbjct: 113 QLSSLAPATATPTAGAGTTQTDADVYGQAASNLVAGNNLEHVIQQILDMGGGSWDRDTVV 172
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ-PVAR-APGNG----QAANSPTQMPQPTQPAP 234
RALRAAYNNPERAVEYLYSGIPE AEV PVAR P G A +P +
Sbjct: 173 RALRAAYNNPERAVEYLYSGIPETAEVAPPVARPTPSVGQAANPTAPAPAAAAAAAAASA 232
Query: 235 VTSSGPNANPLDLFPQGLPD---------------VGSGAAGAGSLDFLRNSPQFQVLRA 279
+GPNA PLDLFPQGLP+ AGAG+LDFLRN+PQFQ LR
Sbjct: 233 TAQAGPNAAPLDLFPQGLPNLGAGAGAGAGAGLGAGAGAGAGAGALDFLRNNPQFQALRT 292
Query: 280 MVQANPQLF 288
MVQANPQ+
Sbjct: 293 MVQANPQIL 301
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|53793157|dbj|BAD54365.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|53793163|dbj|BAD54370.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113595374|dbj|BAF19248.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|125596775|gb|EAZ36555.1| hypothetical protein OsJ_20893 [Oryza sativa Japonica Group]
gi|215692584|dbj|BAG88004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 413
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 178/324 (54%), Positives = 213/324 (65%), Gaps = 35/324 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT+F++E PE +V +VK IE+ QG +VYPA QQMLI+QGK+LKDDTTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
NKVAENSF+VIML+K K + ST S AP QS TP A+ A P P+ T
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVS--QSQPATPVASVARTPPPQAPVVT-- 116
Query: 122 TPAPTPAPASAS--------------VSSVSATSESGVYGHAASNLVAGNNLEGAIQQIL 167
P PAP SA ++V+A+S++ VY AASNLV+G+NLE IQQIL
Sbjct: 117 ---PEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQQIL 173
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE-VQPVARAP-----GNGQAAN 221
DMGGGTW+RD VVRALRAAYNNPERA++YLYSGIPE E QPVARAP GN Q +
Sbjct: 174 DMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVARAPAAVQQGNPQVPS 233
Query: 222 SPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG-------AAGAGSLDFLRNSPQF 274
P P +SGPNANPL+LFPQG+P GS AGAG+LD LR PQF
Sbjct: 234 QAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAGAGAGALDALRQLPQF 293
Query: 275 QVLRAMVQANPQLF-PCFKSWGNK 297
Q L A+VQANPQ+ P + G +
Sbjct: 294 QALLALVQANPQILQPMLQELGKQ 317
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_22453 [Oryza sativa Indica Group]
Length = 413
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 178/324 (54%), Positives = 213/324 (65%), Gaps = 35/324 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT+F++E PE +V +VK IE+ QG +VYPA QQMLI+QGK+LKDDTTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
NKVAENSF+VIML+K K + ST S AP QS TP A+ A P P+ T
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVS--QSQPATPVASVARTPPPQAPVVT-- 116
Query: 122 TPAPTPAPASAS--------------VSSVSATSESGVYGHAASNLVAGNNLEGAIQQIL 167
P PAP SA ++V+A+S++ VY AASNLV+G+NLE IQQIL
Sbjct: 117 ---PEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQQIL 173
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE-VQPVARAP-----GNGQAAN 221
DMGGGTW+RD VVRALRAAYNNPERA++YLYSGIPE E QPVARAP GN Q +
Sbjct: 174 DMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVARAPAAVQQGNPQVPS 233
Query: 222 SPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG-------AAGAGSLDFLRNSPQF 274
P P +SGPNANPL+LFPQG+P GS AGAG+LD LR PQF
Sbjct: 234 QAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAGAGAGALDALRQLPQF 293
Query: 275 QVLRAMVQANPQLF-PCFKSWGNK 297
Q L A+VQANPQ+ P + G +
Sbjct: 294 QALLALVQANPQILQPMLQELGKQ 317
>gi|356567282|ref|XP_003551850.1| PREDICTED: putative DNA repair protein RAD23-4-like [Glycine max]
Length = 375
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 165/300 (55%), Positives = 200/300 (66%), Gaps = 21/300 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKGT F ++V P+DTV VK IET QG+DVYPAAQQMLI+QGKVL D TTLE
Sbjct: 1 MKINVKTLKGTHFVLQVNPQDTVAVVKKNIETAQGADVYPAAQQMLIHQGKVLNDATTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV---PIS 118
ENKV EN+FVVIML+KNK +G S S T+ PQSS P ++ + P +AV +
Sbjct: 61 ENKVVENNFVVIMLSKNKVSSGASSAPSNLGTQ-PQSSL-PPTSSTSQPPASAVGQGESN 118
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
+E +P TP P A S +Y HAASNL+AG+NLE IQQIL+MGGG WDRDT
Sbjct: 119 SEQSPVITP-PTIAVPS---------IYDHAASNLMAGSNLETTIQQILEMGGGNWDRDT 168
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V AL AA+NNPERA+EYLYSGIPE+A+V R+ GQA NS Q QP P +
Sbjct: 169 VTGALHAAFNNPERAIEYLYSGIPERADVPAAVRSLITGQAENSSIQSTQPAVP----TG 224
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
GPN NPL+LFPQGLP++ S G LD LRN +FQ LR ++ NPQ+ P + G +
Sbjct: 225 GPNTNPLNLFPQGLPNM-SAIDNRGDLDSLRNREEFQALRETMRENPQILQPMIQELGQQ 283
>gi|358249346|ref|NP_001240038.1| uncharacterized protein LOC100819019 [Glycine max]
gi|255647960|gb|ACU24437.1| unknown [Glycine max]
Length = 363
Score = 273 bits (697), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 159/301 (52%), Positives = 198/301 (65%), Gaps = 35/301 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP--QT-AVPIS 118
ENKV+E+ F+V+ML+K+K +G + S P P ++ T +TP + P QT A S
Sbjct: 61 ENKVSEDGFLVVMLSKSKT-SGSAAASSVQPASNPPTTVSTSNSTPPSDPPVQTQAANNS 119
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T T APT ++VSA + YG AASNLVAG+NLE IQQI+DMGGG WDRDT
Sbjct: 120 TSSTDAPT--------TNVSADT----YGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDT 167
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAAYNNPERA++YLYSGIPE AEV PV + G A PV
Sbjct: 168 VSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGA------------VPV-- 213
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGN 296
GPN++PL++FPQ + S AG GSLDFLRN+PQFQ LR+MVQ+NPQ+ P + G
Sbjct: 214 -GPNSSPLNMFPQ--ETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGK 270
Query: 297 K 297
+
Sbjct: 271 Q 271
>gi|255641364|gb|ACU20959.1| unknown [Glycine max]
Length = 363
Score = 273 bits (697), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 159/301 (52%), Positives = 198/301 (65%), Gaps = 35/301 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP--QT-AVPIS 118
ENKV+E+ F+V+ML+K+K +G + S P P ++ T +TP + P QT A S
Sbjct: 61 ENKVSEDGFLVVMLSKSKT-SGSAAASSVQPASNPPTTVSTSNSTPPSDPPVQTQAANNS 119
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T T APT ++VSA + YG AASNLVAG+NLE IQQI+DMGGG WDRDT
Sbjct: 120 TSSTDAPT--------TNVSADT----YGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDT 167
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAAYNNPERA++YLYSGIPE AEV PV + G A PV
Sbjct: 168 VSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGA------------VPV-- 213
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGN 296
GPN++PL++FPQ + S AG GSLDFLRN+PQFQ LR+MVQ+NPQ+ P + G
Sbjct: 214 -GPNSSPLNMFPQ--ETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGK 270
Query: 297 K 297
+
Sbjct: 271 Q 271
>gi|356521678|ref|XP_003529480.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 363
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/301 (52%), Positives = 197/301 (65%), Gaps = 35/301 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP--QT-AVPIS 118
ENKV+E+ F+V+ML+K+K +G + S P P ++ +TP + P QT A S
Sbjct: 61 ENKVSEDGFLVVMLSKSKT-SGSAAASSVQPASNPATTVSMSNSTPPSDPPVQTQAANNS 119
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T T APT ++VSA + YG AASNLVAG+NLE IQQI+DMGGG WDRDT
Sbjct: 120 TSSTDAPT--------TNVSADT----YGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDT 167
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAAYNNPERA++YLYSGIPE AEV PV + G A PV
Sbjct: 168 VSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGA------------VPV-- 213
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGN 296
GPN++PL++FPQ + S AG GSLDFLRN+PQFQ LR+MVQ+NPQ+ P + G
Sbjct: 214 -GPNSSPLNMFPQ--ETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGK 270
Query: 297 K 297
+
Sbjct: 271 Q 271
>gi|223945395|gb|ACN26781.1| unknown [Zea mays]
Length = 294
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 164/288 (56%), Positives = 200/288 (69%), Gaps = 14/288 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V DVK IET QG Y A QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT--AVPIST 119
N VAENSF+VIML+K K + ST +TA A + P A A+ +T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPVAT 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
T P+ P +A ++V+AT ++ VY AASNLV+GNNLE IQQILDMGGGTW+RDTV
Sbjct: 121 AETAPPSVQPQAAPAATVAATDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERDTV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAAN----SPTQ--MPQPTQPA 233
VRALRAAYNNPERA++YLYSGIPE E QPVARAP GQ N SP Q + P QP+
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASPAQPAVALPVQPS 240
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQV 276
P S+GPNANPL+LFPQG+P GS AG+G+LD LR PQ +
Sbjct: 241 PA-SAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQVVI 287
>gi|357147838|ref|XP_003574508.1| PREDICTED: probable DNA repair protein RAD23-like [Brachypodium
distachyon]
Length = 394
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 159/302 (52%), Positives = 198/302 (65%), Gaps = 13/302 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KTLKG+SF++EV P V D+K IE QG +VYPA QQMLI+QG VLK+DTTLE
Sbjct: 1 MKVSIKTLKGSSFEIEVDPTSKVVDLKKLIENTQGQNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV EN+F+VIML+K K T S + PTK P P A P P++ P
Sbjct: 61 ENKVLENNFIVIMLSK-KGSTSAASGTAKEPTKQPMVDRAAPVAPAMQLPAEQTPVT--P 117
Query: 122 TPAPTPAPASASVSSVSATSESGV-----YGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
AP P + + + +A + + YG AAS+LVAG+NLEG +Q IL+MGGG WDR
Sbjct: 118 VSAPVPTALAVAPPAATAAAAAASTQADPYGQAASSLVAGSNLEGTVQSILEMGGGAWDR 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
DTVV ALRAA+NNPERAVEYLY+G+PEQ P P GQ + P Q PQ Q V
Sbjct: 178 DTVVHALRAAFNNPERAVEYLYTGVPEQEAPAPAQEPPALGQQGD-PVQAPQSQQ--AVA 234
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWG 295
SSGPNANPLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+ P + G
Sbjct: 235 SSGPNANPLDLFPQVLPNASANAAG-GNLDVLRNNSQFRGLLSLVQANPQILQPLLQELG 293
Query: 296 NK 297
+
Sbjct: 294 KQ 295
>gi|449501601|ref|XP_004161413.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 401
Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 159/317 (50%), Positives = 202/317 (63%), Gaps = 29/317 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+ DTV VK IE VQG D YP QQ+LI+ GKVLKD++TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT----APQTAVPI 117
ENKV+E F+V+ML+K+K G + ST P + P + P ++TPA +P A +
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVSAGQS-STQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQV 119
Query: 118 STEPTPAP-------TPAPASASVSSVSATS------ESGVYGHAASNLVAGNNLEGAIQ 164
+ PTPAP T AP+SA ++ S + ++ YG AASNLVAGNNLE +Q
Sbjct: 120 TPSPTPAPQAPTQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQ 179
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSP 223
Q++DMGGG WDR+TVVRALRAAYNNPERAV+YLYSGIPE AEV PV R G+GQA +
Sbjct: 180 QLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRF-GSGQATETD 238
Query: 224 TQMPQPTQPAPVTSSGPNANPLDLFPQ--GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMV 281
+P P S PN PL++FPQ G G GSL+FLRN+PQFQ LR MV
Sbjct: 239 ASVPAP------VSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMV 292
Query: 282 QANPQLF-PCFKSWGNK 297
NPQ+ P + G +
Sbjct: 293 HTNPQILQPMLQELGKQ 309
>gi|326528949|dbj|BAJ97496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 266 bits (680), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 172/324 (53%), Positives = 207/324 (63%), Gaps = 33/324 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGTSF++E PE +V +VK IE+ QG +VYPA Q M+IYQGK+LKDDTTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV--PIST 119
NKVAENSF+VIML+K K + S+ S AP Q + P AATP +A P S
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPATPVAAATPPVPVASAARSPPSQ 120
Query: 120 EPTPAPTPAPASASVSSVS--------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
P A PAP SA S+VS A+ ++ VY AASNLV+G LE +QQILDMGG
Sbjct: 121 APVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQTVQQILDMGG 180
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA------------RAPGNGQA 219
GTW+RD VVRALRAAYNNPERA++YLYSGIPE E PVA +AP QA
Sbjct: 181 GTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQNLQAPSQAQA 240
Query: 220 ANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPD-----VGSGAAGAGSLDFLRNSPQF 274
A P QP+ S+GPNANPL+LFPQG+P AGAG+LD LR PQF
Sbjct: 241 APLPA-----VQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDALRQLPQF 295
Query: 275 QVLRAMVQANPQLF-PCFKSWGNK 297
Q L A+VQANPQ+ P + G +
Sbjct: 296 QALLALVQANPQILQPMLQELGKQ 319
>gi|356521682|ref|XP_003529482.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 3
[Glycine max]
Length = 348
Score = 266 bits (680), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 150/298 (50%), Positives = 185/298 (62%), Gaps = 44/298 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+E+ F+V+ML+K+K SA + PA+ P T V +S
Sbjct: 61 ENKVSEDGFLVVMLSKSKT----------------SGSAAASSVQPASNPATTVSMSNST 104
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+ P S + YG AASNLVAG+NLE IQQI+DMGGG WDRDTV R
Sbjct: 105 PPSDPPVQTHVSADT---------YGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSR 155
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERA++YLYSGIPE AEV PV + G A PV GP
Sbjct: 156 ALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGA------------VPV---GP 200
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
N++PL++FPQ + S AG GSLDFLRN+PQFQ LR+MVQ+NPQ+ P + G +
Sbjct: 201 NSSPLNMFPQ--ETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQ 256
>gi|326501072|dbj|BAJ98767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 172/324 (53%), Positives = 207/324 (63%), Gaps = 33/324 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGTSF++E PE +V +VK IE+ QG +VYPA Q M+IYQGK+LKDDTTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV--PIST 119
NKVAENSF+VIML+K K + S+ S AP Q + P AATP +A P S
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPATPVAAATPPVPVASAARSPPSQ 120
Query: 120 EPTPAPTPAPASASVSSVS--------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
P A PAP SA S+VS A+ ++ VY AASNLV+G LE +QQILDMGG
Sbjct: 121 APVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQTVQQILDMGG 180
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA------------RAPGNGQA 219
GTW+RD VVRALRAAYNNPERA++YLYSGIPE E PVA +AP QA
Sbjct: 181 GTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQNLQAPSQAQA 240
Query: 220 ANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPD-----VGSGAAGAGSLDFLRNSPQF 274
A P QP+ S+GPNANPL+LFPQG+P AGAG+LD LR PQF
Sbjct: 241 APLPA-----VQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDALRQLPQF 295
Query: 275 QVLRAMVQANPQLF-PCFKSWGNK 297
Q L A+VQANPQ+ P + G +
Sbjct: 296 QALLALVQANPQILQPMLQELGKQ 319
>gi|115476516|ref|NP_001061854.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|38175472|dbj|BAD01169.1| putative osRAD23 [Oryza sativa Japonica Group]
gi|113623823|dbj|BAF23768.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|125603492|gb|EAZ42817.1| hypothetical protein OsJ_27402 [Oryza sativa Japonica Group]
gi|215694056|dbj|BAG89255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 406
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 165/311 (53%), Positives = 205/311 (65%), Gaps = 19/311 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KTLKG+SF+++V+P V DVK IE QG +VYPA QQMLI+QG VLK+DTTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV EN+F+VIML+K + S+ + PTK P P A P P+S EP
Sbjct: 61 ENKVVENNFIVIMLSKKGS-SSAASSTAKEPTKQPSVDRAIPTAPATQPPAPPAPVS-EP 118
Query: 122 TPAPTPAPASASVSSVSATSESGV---YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
AP P +AS + + T+ S YG AASNLVAG+NLEG +Q IL+MGGG WDRDT
Sbjct: 119 VTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDT 178
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARA---PGNGQAA--------NSPTQMP 227
V+RALRAAYNNPERAVEYLY+G+PEQAE +A P QA P+Q P
Sbjct: 179 VMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPAAVQPVDPSQAP 238
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
Q Q + + SSGPNANPLDLFPQ LP+ S AG G+LD LRN+ QF+ L ++VQANPQ+
Sbjct: 239 QSAQLS-IPSSGPNANPLDLFPQVLPN-ASANAGGGNLDVLRNNSQFRGLLSLVQANPQI 296
Query: 288 F-PCFKSWGNK 297
P + G +
Sbjct: 297 LQPLLQELGKQ 307
>gi|125561624|gb|EAZ07072.1| hypothetical protein OsI_29318 [Oryza sativa Indica Group]
Length = 406
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 165/311 (53%), Positives = 205/311 (65%), Gaps = 19/311 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KTLKG+SF+++V+P V DVK IE QG +VYPA QQMLI+QG VLK+DTTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV EN+F+VIML+K + S+ + PTK P P A P P+S EP
Sbjct: 61 ENKVVENNFIVIMLSKKGS-SSAASSTAKEPTKQPSVDRAIPTAPATQPPAPPAPVS-EP 118
Query: 122 TPAPTPAPASASVSSVSATSESGV---YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
AP P +AS + + T+ S YG AASNLVAG+NLEG +Q IL+MGGG WDRDT
Sbjct: 119 VTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDT 178
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARA---PGNGQAA--------NSPTQMP 227
V+RALRAAYNNPERAVEYLY+G+PEQAE +A P QA P+Q P
Sbjct: 179 VMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPAAVQPVDPSQAP 238
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
Q Q + + SSGPNANPLDLFPQ LP+ S AG G+LD LRN+ QF+ L ++VQANPQ+
Sbjct: 239 QSAQLS-IPSSGPNANPLDLFPQVLPN-ASANAGGGNLDVLRNNSQFRGLLSLVQANPQI 296
Query: 288 F-PCFKSWGNK 297
P + G +
Sbjct: 297 LQPLLQELGKQ 307
>gi|226496401|ref|NP_001149140.1| LOC100282762 [Zea mays]
gi|195625028|gb|ACG34344.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 263 bits (671), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 162/307 (52%), Positives = 202/307 (65%), Gaps = 12/307 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V +VK IET QG YPA QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
N VAENSF+VIML+K K + ST + A A + PA + P T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRTP-TQAPVATAE 119
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P+ +A ++ +A+ ++ VY AASNLV+GNNLE IQQILDMGGGTW+R TVVR
Sbjct: 120 TAPPSAQTQAAPAATAAASDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERGTVVR 179
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP-----APVT 236
ALRAAYNNPERA++YLYSGIPE E PVARAP GQ N P +
Sbjct: 180 ALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAAGQQTNQQAPSPAQPAAAPPVQSSAA 239
Query: 237 SSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PC 290
S+ PNANPL+LFPQG+P G+ AAG+G+LD LR PQFQ L +VQANPQ+ P
Sbjct: 240 SARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQALLQLVQANPQILQPM 299
Query: 291 FKSWGNK 297
+ G +
Sbjct: 300 LQELGKQ 306
>gi|226528090|ref|NP_001149553.1| LOC100283179 [Zea mays]
gi|194700938|gb|ACF84553.1| unknown [Zea mays]
gi|195627978|gb|ACG35819.1| DNA repair protein RAD23 [Zea mays]
gi|414589470|tpg|DAA40041.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 390
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 156/306 (50%), Positives = 191/306 (62%), Gaps = 28/306 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV+P D V VK IE +Q YPA QQ+LI+QGKVL DDTTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGKVLSDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
EN+V EN+F+VIML +NK + ++TA P + P + AP PI P
Sbjct: 61 ENQVTENNFLVIMLRQNKGSSSAAPAKTTANQAPPTQTVPVVPPQTSAAPAAPAPIV--P 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A +++ +V+ ++E+ YG AASNLVAG+NLEG IQ IL+MGGG WDRDTV+R
Sbjct: 119 VSALAATATASAAPAVAVSTEADSYGQAASNLVAGSNLEGTIQSILEMGGGIWDRDTVLR 178
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP--QPTQPAPVTS-- 237
ALR AYNNPERAVEYLYSGIPEQ +V PT P QP P
Sbjct: 179 ALRVAYNNPERAVEYLYSGIPEQMDV---------------PTSPPSIQPVNPVQAAQAA 223
Query: 238 -----SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCF 291
SGPNANPLDLFPQ LP+ S AG G+LD LRN+ QFQ L +VQANPQ+ P
Sbjct: 224 QTAAPSGPNANPLDLFPQSLPN-ASANAGTGNLDVLRNNVQFQNLLGLVQANPQILQPLL 282
Query: 292 KSWGNK 297
+ G +
Sbjct: 283 QELGKQ 288
>gi|195622128|gb|ACG32894.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 161/307 (52%), Positives = 201/307 (65%), Gaps = 12/307 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V +VK IET QG YPA QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
N VAENSF+VIML+K K + ST + A A + PA + P T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRTP-TQAPVATAE 119
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P+ +A ++ +A+ ++ VY AASNLV+GNNLE IQQILDMGGGTW+R TVVR
Sbjct: 120 TAPPSAQTQAAPAATAAASDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERGTVVR 179
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP-----APVT 236
ALRAAYNNPERA++YLYSGIPE E PVA AP GQ N P +
Sbjct: 180 ALRAAYNNPERAIDYLYSGIPENVEAPPVAGAPAAGQQTNQQAPSPAQPAAAPPVQSSAA 239
Query: 237 SSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PC 290
S+ PNANPL+LFPQG+P G+ AAG+G+LD LR PQFQ L +VQANPQ+ P
Sbjct: 240 SARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQALLQLVQANPQILQPM 299
Query: 291 FKSWGNK 297
+ G +
Sbjct: 300 LQELGKQ 306
>gi|168057528|ref|XP_001780766.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667784|gb|EDQ54405.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 396
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 163/304 (53%), Positives = 197/304 (64%), Gaps = 10/304 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD+ V ++ V VK KIE +QG D +P AQQ+LI+QGKVLKD+TT+
Sbjct: 1 MKISVKTLKGNHFDLHVAEDELVSSVKRKIEELQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 62 ENKVAENSFVVIMLTK---NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
+NKVAEN F+V+MLTK ++ TG R+ A + AP PA + P A P
Sbjct: 61 DNKVAENGFLVVMLTKVRLHESNTGTSRWRTRVVAPAAPAPAPAPAPASTSTPAPAAPAP 120
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
A TP + +V+ T + YG AASNLVAG+ LE +QQI+DMGGGTWDRDT
Sbjct: 121 APAAVAATPGAGAPAVALCRGTGDG--YGQAASNLVAGSALESTVQQIMDMGGGTWDRDT 178
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEV-QPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V+RALRAA+NNPERAVEYLYSGIPE AEV PVAR P G A + A +
Sbjct: 179 VLRALRAAFNNPERAVEYLYSGIPEAAEVPAPVARGPPAGGAPVAAAPAGPGAAGAAAVA 238
Query: 238 ---SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKS 293
GPNA PLDLFPQG+P G G AG G+LDFLRN+PQFQ LR MVQANPQ+ P +
Sbjct: 239 ANPQGPNAAPLDLFPQGMPGAGGGGAGLGALDFLRNNPQFQALRTMVQANPQILQPMLQE 298
Query: 294 WGNK 297
G +
Sbjct: 299 LGKQ 302
>gi|30699439|ref|NP_850982.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|73620991|sp|Q84L33.3|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName:
Full=RAD23-like protein 1; Short=AtRAD23-1
gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana]
gi|110735096|gb|ABG89118.1| Rad23-3Aii [synthetic construct]
gi|332198160|gb|AEE36281.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 371
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 145/301 (48%), Positives = 192/301 (63%), Gaps = 29/301 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G + A + S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKS----GGSAGQASVQTSSVSQPVSATTSSTKP--AAPSTTQS 114
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 115 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 169
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 170 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 217
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGN 296
GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+ P + G
Sbjct: 218 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGK 276
Query: 297 K 297
+
Sbjct: 277 Q 277
>gi|302756389|ref|XP_002961618.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
gi|300170277|gb|EFJ36878.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
Length = 367
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/299 (53%), Positives = 196/299 (65%), Gaps = 29/299 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD++V+P DTV VK +IE +QG + +P AQQ+LI+QGKVLKD+TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+EN F+V+MLTK+K T AP SS TP++TP AP T
Sbjct: 61 ENKVSENGFLVVMLTKSK-------------TAAPTSSGATPSSTPQAAPAT-------- 99
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
S + + + T+ S VYG AASNLVAG LE IQQ++DMGGG+WDRD+ R
Sbjct: 100 ----VTTTPSPAPPAPAPTATSDVYGQAASNLVAGTGLEQTIQQLVDMGGGSWDRDSCAR 155
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ--PAPVTSSG 239
ALRAAYNNPERAVEYLYSGIP+ A+ PVARAP AA + PT PAP + G
Sbjct: 156 ALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPSAAPTGGVPAPAATGG 215
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
PNA PLDLFPQ + +G G G+LDFLRN+ QFQ LR MVQ NPQL P + G +
Sbjct: 216 PNAVPLDLFPQ-VRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNPQLLQPMLQELGRQ 273
>gi|356550681|ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 367
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 143/299 (47%), Positives = 186/299 (62%), Gaps = 27/299 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DT+ VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV+E+ F+V+ML+K K G ST P ++ TP +TP PQ+A
Sbjct: 61 DNKVSEDGFLVVMLSKGKT-LGSAGISSTQFASNPPTTVSTPNSTPLVQPQSA------- 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+++ + + YG AASNLVAG+NLE IQQ++DMGGG+WDRDTV
Sbjct: 113 ------NNNASATDVTTTNVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTC 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS--SG 239
ALRAAYNNPERAV+YLYSGIP AE+ P AA+ P T A V +
Sbjct: 167 ALRAAYNNPERAVDYLYSGIPVAAEI----AVP----AASYPISQTTETGGASVGAVPGV 218
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
PN++PL++FPQ + A GSLDFLRN+PQFQ LR+MVQ+NPQ+ P + G +
Sbjct: 219 PNSSPLNMFPQ--ETISGAGAEIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQ 275
>gi|358346471|ref|XP_003637291.1| RAD23 protein [Medicago truncatula]
gi|355503226|gb|AES84429.1| RAD23 protein [Medicago truncatula]
Length = 366
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 145/302 (48%), Positives = 190/302 (62%), Gaps = 34/302 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV+E+ F+V+ML+K+K G T ST P + PTP +T Q+A ++
Sbjct: 61 DNKVSEDGFLVVMLSKSK-VLGSAGTSSTQTASNPPITVPTPDSTSVVQTQSANNNASPA 119
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
APT + T+++ YG AASNLVAG+NLE IQQ++DMGGG+WDRDTV R
Sbjct: 120 VLAPT-----------NVTTDT--YGQAASNLVAGSNLEQTIQQLIDMGGGSWDRDTVNR 166
Query: 182 ALRAAYNNPERAVEYLYSGI-PEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS--- 237
ALRAA+NNPERAV+YLYSGI P A+ P N PT+ VT+
Sbjct: 167 ALRAAFNNPERAVDYLYSGIPEAAEVAVPAAQYPSN------------PTETGGVTTGVV 214
Query: 238 -SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWG 295
PN++PL++FPQ + AGAGSLDFLRN+PQFQ LR MVQ+NPQ+ P + G
Sbjct: 215 PGVPNSSPLNMFPQ--ETISGAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELG 272
Query: 296 NK 297
+
Sbjct: 273 KQ 274
>gi|449439755|ref|XP_004137651.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 358
Score = 253 bits (645), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 147/300 (49%), Positives = 186/300 (62%), Gaps = 38/300 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+ DTV VK IE VQG D YP QQ+LI+ GKVLKD++TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+E F+V+ML+K+K G + ST P + P + P ++TPA
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVSAGQS-STQPAQNPPVAQPVLSSTPA------------- 106
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ V+ + ++ YG AASNLVAGNNLE +QQ++DMGGG WDR+TVVR
Sbjct: 107 -------------AQVTPSVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETVVR 153
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERAV+YLYSGIPE AEV PV R G+GQA + +P P S P
Sbjct: 154 ALRAAYNNPERAVDYLYSGIPESAEVAVPVGRF-GSGQATETDASVPAP------VSGAP 206
Query: 241 NANPLDLFPQ--GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
N PL++FPQ G G GSL+FLRN+PQFQ LR MV NPQ+ P + G +
Sbjct: 207 NTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQ 266
>gi|356550683|ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 353
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 180/299 (60%), Gaps = 41/299 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DT+ VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV+E+ F+V+ML+K K G + + A P ++ TP +TP P
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQACCFNPPTTVSTPNSTPLVQPHVT------- 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ YG AASNLVAG+NLE IQQ++DMGGG+WDRDTV
Sbjct: 114 ---------------------TNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTC 152
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS--SG 239
ALRAAYNNPERAV+YLYSGIP AE+ P AA+ P T A V +
Sbjct: 153 ALRAAYNNPERAVDYLYSGIPVAAEI----AVP----AASYPISQTTETGGASVGAVPGV 204
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
PN++PL++FPQ + A GSLDFLRN+PQFQ LR+MVQ+NPQ+ P + G +
Sbjct: 205 PNSSPLNMFPQ--ETISGAGAEIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQ 261
>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana]
Length = 371
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/301 (47%), Positives = 191/301 (63%), Gaps = 29/301 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G + A + S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKS----GGSAGQASVQTSSVSQPVSATTSSTKP--AAPSTTQS 114
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 115 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 169
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 170 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 217
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGN 296
GPN++PLDLFPQ +G+ G+L+FLRN+ Q + LR MV +NPQ+ P + G
Sbjct: 218 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQLEQLRTMVHSNPQILQPMLQELGK 276
Query: 297 K 297
+
Sbjct: 277 Q 277
>gi|449459440|ref|XP_004147454.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 374
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 151/291 (51%), Positives = 193/291 (66%), Gaps = 23/291 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F +EV+P DTV VK IE VQG D YP +QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLT 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENK+ E+ F+V+ML+K+K P GS+ + T P ++ + + AP
Sbjct: 61 ENKITEDGFLVVMLSKSKAPGSTGSSSTQTTTIVPTTTPTPNSTSIPEAP---------- 110
Query: 122 TPAPTPAPASASVSSV-SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
A A + ++S V +A ++ YG AASNLV+GNNLE IQ+I+DMGGG+WDR+TV
Sbjct: 111 --AQPAASRNVAISDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVT 168
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEV-QPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
RALRAAYNNPERAV+YLYSGIPE AEV PVAR P GQ ++ AP S G
Sbjct: 169 RALRAAYNNPERAVDYLYSGIPETAEVAAPVARPP-TGQPIDAGGAT------APPVSGG 221
Query: 240 PNANPLDLFPQ--GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
PN++PL++FPQ G G GSL+FLRN+PQFQ LR+MVQANPQ+
Sbjct: 222 PNSSPLNMFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALRSMVQANPQIL 272
>gi|22330746|ref|NP_565216.2| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|332198158|gb|AEE36279.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 365
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/301 (47%), Positives = 189/301 (62%), Gaps = 35/301 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQA----------SVQPVSATTSSTKP--AAPSTTQS 108
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 109 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 163
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 164 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 211
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGN 296
GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+ P + G
Sbjct: 212 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGK 270
Query: 297 K 297
+
Sbjct: 271 Q 271
>gi|110735098|gb|ABG89119.1| Rad23-3Ai [synthetic construct]
Length = 365
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/301 (47%), Positives = 189/301 (62%), Gaps = 35/301 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQA----------SVQPVSATTSSTNP--AAPSTTQS 108
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 109 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 163
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 164 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 211
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGN 296
GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+ P + G
Sbjct: 212 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGK 270
Query: 297 K 297
+
Sbjct: 271 Q 271
>gi|334184023|ref|NP_001185439.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198161|gb|AEE36282.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 395
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/320 (45%), Positives = 196/320 (61%), Gaps = 43/320 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G + A + S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKS----GGSAGQASVQTSSVSQPVSATTSSTKP--AAPSTTQS 114
Query: 122 TPAP-TPAPAS------ASVSSVS-------------ATSESGVYGHAASNLVAGNNLEG 161
+P P +P PA A V S + + +++ YG AAS LV+G++LE
Sbjct: 115 SPVPASPIPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTLVSGSSLEQ 174
Query: 162 AIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQ 218
+QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G
Sbjct: 175 MVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGA 234
Query: 219 AANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLR 278
A P PA S GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR
Sbjct: 235 A---------PVAPA---SGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLR 281
Query: 279 AMVQANPQLF-PCFKSWGNK 297
MV +NPQ+ P + G +
Sbjct: 282 TMVHSNPQILQPMLQELGKQ 301
>gi|297842761|ref|XP_002889262.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
gi|297335103|gb|EFH65521.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
Length = 365
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/300 (47%), Positives = 188/300 (62%), Gaps = 33/300 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG + YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKNNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K TA + S P A T +T P+T P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSK----------TAGSAGQSSVQPASATTSSTKPET--PSTTQS 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P AS + +++ YG AAS LV+G++LE +QQI++MGGG+WD++TV R
Sbjct: 109 IAVP----ASPITAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
ALRAAYNNPERAV+YLYSGIPE AEV P A+ G+G A P PA S
Sbjct: 165 ALRAAYNNPERAVDYLYSGIPETAEVAVAVPGAQMAGSGAA---------PVAPA---SG 212
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+ P + G +
Sbjct: 213 GPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQ 271
>gi|356521680|ref|XP_003529481.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 343
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 150/302 (49%), Positives = 188/302 (62%), Gaps = 39/302 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP--QT-AVPIS 118
ENKV+E+ F+V+ML+K+K +G + S P P ++ +TP + P QT A S
Sbjct: 61 ENKVSEDGFLVVMLSKSKT-SGSAAASSVQPASNPATTVSMSNSTPPSDPPVQTQAANNS 119
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T T APT ++VSA + YG AASNLVAG+NLE IQQI+DMGGG WDRDT
Sbjct: 120 TSSTDAPT--------TNVSADT----YGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDT 167
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAAYNNPERA++YLYSGIPE AEV PV + G A PV
Sbjct: 168 VSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGA------------VPV-- 213
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCFKSWGNK 297
GPN++PL++FPQ + S AG GSLDFLRN+PQ + + NP L + +
Sbjct: 214 -GPNSSPLNMFPQ--ETISSTGAGLGSLDFLRNNPQ-----ELGKQNPGLLRLIQEHHGE 265
Query: 298 IL 299
L
Sbjct: 266 FL 267
>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana]
Length = 365
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/301 (47%), Positives = 188/301 (62%), Gaps = 35/301 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQA----------SVQPVSATTSSTKP--AAPSTTQS 108
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 109 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 163
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 164 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 211
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGN 296
GPN++PLDLFPQ +G+ G+L+FLRN+ Q + LR MV +NPQ+ P + G
Sbjct: 212 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQLEQLRTMVHSNPQILQPMLQELGK 270
Query: 297 K 297
+
Sbjct: 271 Q 271
>gi|357158336|ref|XP_003578095.1| PREDICTED: probable DNA repair protein RAD23-like isoform 2
[Brachypodium distachyon]
Length = 370
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 152/297 (51%), Positives = 187/297 (62%), Gaps = 25/297 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE+ QG +VYPA QQMLI+QG
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGT--------- 51
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
NK + ++ K+K P+ + T P P S AP A PA A + + P
Sbjct: 52 -NKGSSSA----APAKSKEPSNQAPPTQTVPANPP-SQAPVVPAPPAAAAPAPIVPISAP 105
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP T +PASA V+ ++E+ YG AASNLVAG NLE IQ IL+MGGGTWDRDTV+R
Sbjct: 106 TPTATASPASA----VAVSTEAETYGQAASNLVAGGNLEATIQSILEMGGGTWDRDTVLR 161
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+NNPERAVEYLYSGIPE E+ + P Q Q TQPA V SSGPN
Sbjct: 162 ALRAAFNNPERAVEYLYSGIPEPMEIPAPPPS----AQPADPVQALQATQPA-VASSGPN 216
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
A+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+ P + G +
Sbjct: 217 ASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQ 273
>gi|118486403|gb|ABK95041.1| unknown [Populus trichocarpa]
Length = 375
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 149/300 (49%), Positives = 196/300 (65%), Gaps = 21/300 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F+++V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV E+ F+V+ML+K+K T T ST P P ++ PT +TP A
Sbjct: 61 DNKVTEDGFLVVMLSKSK--TAAAGTSSTQPVSTPPTTTPTSNSTPDAPAPDA------- 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ ++++ + +A ++S YG AASNLVAG++LE IQQI+D+GGG WD++TV R
Sbjct: 112 --QAPASKSASASDTATANAQSDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTR 169
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERAV+YLYSGIPE AEV PVAR P A+ + + GP
Sbjct: 170 ALRAAYNNPERAVDYLYSGIPETAEVAVPVARFP-----ADQGIETGAAPAAPALAPGGP 224
Query: 241 NANPLDLFPQGLPDVGSGAAG--AGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
N++PL++FP+ L G G AG GSLDFLRN+ QFQ LR+MVQANPQ+ P + G +
Sbjct: 225 NSSPLNMFPETLSG-GGGDAGLVLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQ 283
>gi|224073098|ref|XP_002303970.1| predicted protein [Populus trichocarpa]
gi|222841402|gb|EEE78949.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 148/299 (49%), Positives = 187/299 (62%), Gaps = 36/299 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F+++V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV E+ F+V+ML+K+K TG T ST P P ++ PT +TPA Q
Sbjct: 61 DNKVTEDGFLVVMLSKSK--TGTAGTSSTQPVSTPPTTTPTSISTPAPDAQ--------- 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A ++S YG AASNLVAG+NLE +QQI+DMGGGTWD++TV R
Sbjct: 110 -----------------AFAQSDTYGQAASNLVAGSNLEQTLQQIMDMGGGTWDKETVTR 152
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERAV+YLYSGIPE AEV PVAR P A+ T+ P
Sbjct: 153 ALRAAYNNPERAVDYLYSGIPETAEVAVPVARFP-----ADQATETGAAPAAPAPAFGAP 207
Query: 241 NANPLDLFPQGLP-DVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
N++PL++FP+ + G G GSLDFLRN+ QFQ LR+MVQANPQ+ P + G +
Sbjct: 208 NSSPLNMFPETISGGGGGAGGGLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQ 266
>gi|297844544|ref|XP_002890153.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
gi|297335995|gb|EFH66412.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/298 (47%), Positives = 183/298 (61%), Gaps = 30/298 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K P+ G + + + +PTP A AP AVP S
Sbjct: 61 ENKVTEEGFLVVMLSKSKTPSSAGPSSIQPTSTTTSTISPTPLA----APSIAVPASNS- 115
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP PA +S YG AAS LV+G+++E +QQI++MGGG+WD++TV R
Sbjct: 116 TPVQEQLPA-----------QSDTYGQAASTLVSGSSVEQMVQQIMEMGGGSWDKETVTR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAV+YLYSGIPE + P G G A AP S GPN
Sbjct: 165 ALRAAYNNPERAVDYLYSGIPETVAI-PATNLSGVGSGAEL---------TAPPASGGPN 214
Query: 242 ANPLDLFPQ-GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
++PLDLFPQ + D G G G+L+FLR + QFQ LR+MV +NPQ+ P + G +
Sbjct: 215 SSPLDLFPQEAVSDAGGG--DLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQ 270
>gi|168020994|ref|XP_001763027.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685839|gb|EDQ72232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 158/298 (53%), Positives = 192/298 (64%), Gaps = 24/298 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD+EV P DTV +VK +IE QG + +P +QQ+LI+QGKVLKD+TT+E
Sbjct: 1 MKISVKTLKGNHFDLEVSPADTVLNVKRQIEDSQGKESFPCSQQLLIHQGKVLKDETTME 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+EN FVV+MLTK K TG G A P+++ T V +T P
Sbjct: 61 ENKVSENGFVVVMLTKAK--TGAG--------------ASPPSSSGTTQAPAPVAAATPP 104
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA +PA S + A + + YG AASNLVAGN LE +QQI+DMGGG+WDRDTVVR
Sbjct: 105 APARSPATPSPPTPATPAPAPASTYGQAASNLVAGNVLETTVQQIMDMGGGSWDRDTVVR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPV-ARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAA+NNPERAVEYLYSGIPE AE++PV R+P A + GP
Sbjct: 165 ALRAAFNNPERAVEYLYSGIPESAEMRPVGGRSP----AVAGVPAATPAAPAQAAPAGGP 220
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
NA PLDLFPQ +G GAG+LDFLRN+PQ LR MVQANPQ+ P + G +
Sbjct: 221 NAAPLDLFPQ-GMPGMAGGGGAGALDFLRNNPQAS-LRTMVQANPQILQPMLQELGKQ 276
>gi|115444607|ref|NP_001046083.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|50252077|dbj|BAD28007.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113535614|dbj|BAF07997.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|222622305|gb|EEE56437.1| hypothetical protein OsJ_05616 [Oryza sativa Japonica Group]
Length = 369
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 149/297 (50%), Positives = 186/297 (62%), Gaps = 21/297 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+E F+V+ML+K+K G+ S + P + TPA APQ V + P
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSLT-SSTPLTRQETPADASRAAPQPLVAPTRTP 119
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P PA A S YG AASNL++G+NL+ I Q+++MGGG+WDRD V R
Sbjct: 120 QPERPPAEAP-----------SNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQR 168
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAVEYLYSGIP AEV P GQ AN T P T+ A + S PN
Sbjct: 169 ALRAAYNNPERAVEYLYSGIPITAEVA----VPAGGQGAN--TTEPSSTREASL-SGIPN 221
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
A+PL+LFPQG G AG G+L+FLR++ QFQ LR MV NPQ+ P + K
Sbjct: 222 ASPLNLFPQG-DANDGGGAGGGTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKK 277
>gi|218190185|gb|EEC72612.1| hypothetical protein OsI_06092 [Oryza sativa Indica Group]
Length = 369
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 148/297 (49%), Positives = 185/297 (62%), Gaps = 21/297 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+E F+V+ML+K+K G+ S + P + TPA APQ V + P
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSLT-SSTPLTRQETPADASRAAPQPLVAPTRTP 119
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P PA A S YG AASNL++G+NL+ I Q+++MGGG+WDRD V R
Sbjct: 120 QPERPPAEAP-----------SNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQR 168
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAVEYLYSGIP AEV P GQ AN T P T+ A + S PN
Sbjct: 169 ALRAAYNNPERAVEYLYSGIPITAEVA----VPAGGQGAN--TTEPSSTREASL-SGIPN 221
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
A+PL+LFPQG AG G+L+FLR++ QFQ LR MV NPQ+ P + K
Sbjct: 222 ASPLNLFPQG-DANDGDGAGGGTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKK 277
>gi|302762537|ref|XP_002964690.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
gi|300166923|gb|EFJ33528.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
Length = 385
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 154/303 (50%), Positives = 198/303 (65%), Gaps = 19/303 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD++V+P DTV VK +IE +QG + +P AQQ+LI+QGKVLKD+TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+EN F+V+MLTK +RS+ + SS+ + ++ ++ + +
Sbjct: 61 ENKVSENGFLVVMLTK---------SRSSGIARCSSSSSSSSSSPSTSSSSGSGCYAVSK 111
Query: 122 TPAPTPAPASASVSSV----SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
S S+ + +ATS+ VYG AASNLVAG LE IQQ++DMGGG+WDRD
Sbjct: 112 FSLLHLFWCSLSLVFLRRPPAATSD--VYGQAASNLVAGTGLEQTIQQLVDMGGGSWDRD 169
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ--PAPV 235
+ VRALRAAYNNPERAVEYLYSGIP+ A+ PVARAP AA + PT PAP
Sbjct: 170 SCVRALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPTAAPTGGVPAPA 229
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSW 294
+ GPNA PLDLFPQ + +G G G+LDFLRN+ QFQ LR MVQ NPQL P +
Sbjct: 230 ATGGPNAVPLDLFPQ-VRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNPQLLQPMLQEL 288
Query: 295 GNK 297
G +
Sbjct: 289 GRQ 291
>gi|15221013|ref|NP_173070.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
gi|73620992|sp|Q84L32.2|RD23B_ARATH RecName: Full=Putative DNA repair protein RAD23-2; AltName:
Full=RAD23-like protein 2; Short=AtRAD23-2
gi|110735100|gb|ABG89120.1| Rad23-3B [synthetic construct]
gi|332191297|gb|AEE29418.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
Length = 368
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 137/299 (45%), Positives = 182/299 (60%), Gaps = 28/299 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K + G + + + + + T A P+T AVP S
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 120
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P T++S YG AAS LV+G+++E +QQI++MGGG+WD++TV R
Sbjct: 121 PVQEQP------------TAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTR 168
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAV+YLYSGIPE + P G G + T P P S GPN
Sbjct: 169 ALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGR-------ELTAPPP--SGGPN 218
Query: 242 ANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
++PLDLFPQ + S AAG G+L+FLR + QFQ LR+MV +NPQ+ P + G +
Sbjct: 219 SSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQ 274
>gi|255543415|ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 359
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 151/300 (50%), Positives = 191/300 (63%), Gaps = 37/300 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV E+ F+V+ML+K+K G++ + P ++AP+ +TPA + +P
Sbjct: 61 DNKVTEDGFLVVMLSKSKTSGSSGTSSTQPAAATPPTTAPSSNSTPA--------VEVQP 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PT ++ YG AASNLVAG+NLE IQQI+DMGGGTWD++TV R
Sbjct: 113 ---PT---------------QTDTYGEAASNLVAGDNLEQTIQQIMDMGGGTWDKETVTR 154
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERAV+YLYSGIPE AEV PVA P GQA + PA S P
Sbjct: 155 ALRAAYNNPERAVDYLYSGIPETAEVAVPVAHLPA-GQATET------GAAPAAPLSGVP 207
Query: 241 NANPLDLFPQ--GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
N++PL++FPQ G A G GSLDFLRN+ QFQ LR+MVQANPQ+ P + G +
Sbjct: 208 NSSPLNMFPQEALSAAGGGSAGGLGSLDFLRNNAQFQTLRSMVQANPQILQPMLQELGKQ 267
>gi|298204749|emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 155/316 (49%), Positives = 192/316 (60%), Gaps = 29/316 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKR--PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
ENKV E+ F+V+ML+K+K TG S +S + P PA P AP +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 120 EPTPAPTP---------------APASASVSSVSATS-ESGVYGHAASNLVAGNNLEGAI 163
P P P AP S S S V+ S + YG AASN+V+ N+LE I
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 164 QQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANS 222
QQI+D+GGGTWD++TV RALRAAYNNPERAV+YLYSGIPE AEV PVA P +
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPAD------ 234
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
Q PA S PN++PL++FPQ G+ G GSL+FLRN+ QFQ LRAMVQ
Sbjct: 235 --QETGGAAPAAPASGVPNSSPLNMFPQE-TLSGAAGGGLGSLEFLRNNHQFQALRAMVQ 291
Query: 283 ANPQLF-PCFKSWGNK 297
ANPQ+ P + G +
Sbjct: 292 ANPQILQPMLQELGKQ 307
>gi|42572181|ref|NP_974181.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198159|gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 351
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/295 (46%), Positives = 184/295 (62%), Gaps = 33/295 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G + A + S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKS----GGSAGQASVQTSSVSQPVSATTSSTKP--AAPSTTQS 114
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 115 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 169
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 170 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 217
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCFK 292
GPN++PLDLFPQ +G+ G+L+FLRN+ Q + + NPQL +
Sbjct: 218 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQ-----ELGKQNPQLLRLIQ 266
>gi|359483130|ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis
vinifera]
Length = 400
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 154/316 (48%), Positives = 193/316 (61%), Gaps = 28/316 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKR--PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
ENKV E+ F+V+ML+K+K TG S +S + P PA P AP +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 120 EPTPAPTP---------------APASASVSSVSATS-ESGVYGHAASNLVAGNNLEGAI 163
P P P AP S S S V+ S + YG AASN+V+ N+LE I
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 164 QQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANS 222
QQI+D+GGGTWD++TV RALRAAYNNPERAV+YLYSGIPE AEV PVA P + + +
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPADQETGSG 240
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
PA S PN++PL++FPQ G+ G GSL+FLRN+ QFQ LRAMVQ
Sbjct: 241 AA-------PAAPASGVPNSSPLNMFPQE-TLSGAAGGGLGSLEFLRNNHQFQALRAMVQ 292
Query: 283 ANPQLF-PCFKSWGNK 297
ANPQ+ P + G +
Sbjct: 293 ANPQILQPMLQELGKQ 308
>gi|413926348|gb|AFW66280.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 369
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 179/301 (59%), Gaps = 48/301 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIML----------TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP 111
ENKV E+ F+V+ML T + + + +TR P +APQ AP P P T
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQHSNTPATRQAPPLEAPQ-QAPQPPVAPIT-- 117
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+++P P AP + + +AASNL++G N++ I Q+++MGG
Sbjct: 118 ------TSQPEGLPAQAPNT--------------HDNAASNLLSGRNVDTIINQLMEMGG 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
G+WD+D V RALRAAYNNPERAVEYLYSGIP AE+ P GQ AN+ T
Sbjct: 158 GSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEI----AVPIGGQGANT-------TD 206
Query: 232 PAPVTSSG----PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
AP +G PN PLDLFPQ G AG G LDFLRN+PQFQ +R MV NPQ+
Sbjct: 207 RAPTGEAGLSGIPNTAPLDLFPQQGASNAGGGAGGGPLDFLRNNPQFQAVREMVHTNPQI 266
Query: 288 F 288
Sbjct: 267 L 267
>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana]
Length = 366
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/299 (45%), Positives = 181/299 (60%), Gaps = 30/299 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P T+ VK IE Q D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLP--TIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K + G + + + + + T A P+T AVP S
Sbjct: 59 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P T++S YG AAS LV+G+++E +QQI++MGGG+WD++TV R
Sbjct: 119 PVQEQP------------TAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAV+YLYSGIPE + P G G + T P P S GPN
Sbjct: 167 ALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGR-------ELTAPPP--SGGPN 216
Query: 242 ANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
++PLDLFPQ + S AAG G+L+FLR + QFQ LR+MV +NPQ+ P + G +
Sbjct: 217 SSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQ 272
>gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 180/301 (59%), Gaps = 19/301 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ +P DTV +K IE +QG D YP QQ+LI+ GKVLKD++TL
Sbjct: 1 MKLTVKTLKGSHFEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGS---TRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
E+K++E+ F+V+ML K+K + G+ S+AP P + A A +P +
Sbjct: 61 ESKISEDGFLVVMLGKSKTMSSTGTPAAQSSSAPAPTPAPAVAPAPAPAAAPASAVIPNT 120
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P +PA A S YG AASN+VAG+NLE IQ I+DMGGG WD +
Sbjct: 121 TVPEAPLSPAFAP-----------SDTYGEAASNVVAGSNLEQTIQHIMDMGGGMWDTNM 169
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAAYNNPERAV+YLYSGIPE AE PV+ G+ N+ A
Sbjct: 170 VSRALRAAYNNPERAVDYLYSGIPEMAEAAVPVSHFQGD--QINAGNNAISDNGVAGAAP 227
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGN 296
PN+ PL++FPQ G AG GSL+FLRN+PQFQ LR+MVQ NPQ+ P G
Sbjct: 228 GAPNSLPLNMFPQETLS-GVTGAGLGSLEFLRNNPQFQTLRSMVQRNPQILQPMLLELGK 286
Query: 297 K 297
+
Sbjct: 287 Q 287
>gi|224101717|ref|XP_002312393.1| predicted protein [Populus trichocarpa]
gi|222852213|gb|EEE89760.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/155 (75%), Positives = 126/155 (81%), Gaps = 4/155 (2%)
Query: 145 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204
VYG AAS+LVAG+NLE A+QQILDMGGGTWDRDTVVRALRAAYNNPERA+EYLYSGIPEQ
Sbjct: 91 VYGQAASSLVAGSNLEVAVQQILDMGGGTWDRDTVVRALRAAYNNPERAIEYLYSGIPEQ 150
Query: 205 AEVQPVARAPGNGQA-ANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
AE PVA P GQA A P Q PTQ A V S GPNANPLDLFPQGLP+VGSGA GAG
Sbjct: 151 AEAPPVAHMPLGGQAPAAQPQQ--HPTQTAAVPSGGPNANPLDLFPQGLPNVGSGAGGAG 208
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
+LDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 209 TLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQ 243
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 68/76 (89%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTLKG++FD+EVKPEDTV DVK KIET QG VYPA QQMLI+Q KVLKD+TTL+
Sbjct: 1 MRIFVKTLKGSTFDIEVKPEDTVADVKKKIETAQGVAVYPAEQQMLIHQAKVLKDNTTLD 60
Query: 62 ENKVAENSFVVIMLTK 77
ENK+ ENSFVVIML+K
Sbjct: 61 ENKIVENSFVVIMLSK 76
>gi|226492672|ref|NP_001148810.1| LOC100282427 [Zea mays]
gi|195622286|gb|ACG32973.1| DNA repair protein RAD23-1 [Zea mays]
gi|238014028|gb|ACR38049.1| unknown [Zea mays]
gi|413926349|gb|AFW66281.1| DNA repair protein RAD23-1 isoform 1 [Zea mays]
gi|413926350|gb|AFW66282.1| DNA repair protein RAD23-1 isoform 2 [Zea mays]
gi|413926351|gb|AFW66283.1| DNA repair protein RAD23-1 isoform 3 [Zea mays]
Length = 368
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/301 (46%), Positives = 180/301 (59%), Gaps = 49/301 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIML----------TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP 111
ENKV E+ F+V+ML T + + + +TR P +APQ AP P P T
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQHSNTPATRQAPPLEAPQ-QAPQPPVAPIT-- 117
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+++P P AP + + +AASNL++G N++ I Q+++MGG
Sbjct: 118 ------TSQPEGLPAQAPNT--------------HDNAASNLLSGRNVDTIINQLMEMGG 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
G+WD+D V RALRAAYNNPERAVEYLYSGIP AE+ P GQ AN+ T
Sbjct: 158 GSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIA----VPIGGQGANT-------TD 206
Query: 232 PAPVTSSG----PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
AP +G PN PLDLFPQG G AG G LDFLRN+PQFQ +R MV NPQ+
Sbjct: 207 RAPTGEAGLSGIPNTAPLDLFPQGA-SNAGGGAGGGPLDFLRNNPQFQAVREMVHTNPQI 265
Query: 288 F 288
Sbjct: 266 L 266
>gi|242060736|ref|XP_002451657.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
gi|241931488|gb|EES04633.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
Length = 369
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 179/301 (59%), Gaps = 48/301 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLD 60
Query: 62 ENKVAENSFVVIML----------TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP 111
ENKV E+ F+V+ML T + +P+ + R P APQ AP P P T
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSSGTSSSQPSNTPAARQAPPLDAPQ-QAPQPPVAPTT-- 117
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+++P P AP + Y +AAS+L++G+N++ I Q+++MGG
Sbjct: 118 ------TSQPEGLPAQAPPN-------------TYDNAASSLLSGSNVDTMINQLMEMGG 158
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
G+WDRD V RALRAAYNNPERAVEYLYSGIP AEV P GQ AN+ T
Sbjct: 159 GSWDRDKVQRALRAAYNNPERAVEYLYSGIPVTAEV----AVPIGGQGANT-------TD 207
Query: 232 PAPVTSSG----PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
AP +G PN PL+LFPQG G AG G LDFLRN+ QFQ +R MV NPQ+
Sbjct: 208 RAPTGEAGLSGIPNTAPLNLFPQGG-SNAGGGAGGGPLDFLRNNQQFQAVREMVHTNPQI 266
Query: 288 F 288
Sbjct: 267 L 267
>gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana]
Length = 367
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 129/280 (46%), Positives = 170/280 (60%), Gaps = 30/280 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEG-STRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKV E F+V+ML+K+K G ++ S P P + +S+
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQCVRLLLFHSLFPLPH----------LRLSSI 110
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P T S S S T+ + YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 111 YNPVFT---CSCFTYSCSRTTGTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 167
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 168 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 215
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVL 277
GPN++PLDLFPQ +G+ G+L+FLRN+ Q +L
Sbjct: 216 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQVAIL 254
>gi|449515726|ref|XP_004164899.1| PREDICTED: putative DNA repair protein RAD23-1-like, partial
[Cucumis sativus]
Length = 386
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 175/269 (65%), Gaps = 23/269 (8%)
Query: 24 VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 83
V VK IE VQG D YP +QQ+LI+ GKVLKD+TTL ENK+ E+ F+V+ML+K+K P
Sbjct: 35 VLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSKAPGS 94
Query: 84 EGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSV-SATSE 142
GS+ + T P ++ + + AP A A + ++S V +A ++
Sbjct: 95 TGSSSTQTTTIVPTTTPTPNSTSIPEAP------------AQPAASRNVAISDVPTANAQ 142
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
YG AASNLV+GNNLE IQ+I+DMGGG+WDR+TV RALRAAYNNPERAV+YLYSGIP
Sbjct: 143 IDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIP 202
Query: 203 EQAEV-QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQ--GLPDVGSGA 259
E AEV PVAR P GQ P T AP S GPN++PL++FPQ G G
Sbjct: 203 ETAEVAAPVARPP-TGQ----PIDAGGAT--APPVSGGPNSSPLNMFPQESLAAAAGGGG 255
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
GSL+FLRN+PQFQ LR+MVQANPQ+
Sbjct: 256 GSLGSLEFLRNNPQFQALRSMVQANPQIL 284
>gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from
Daucus carota and is a member of the Ubiquitin PF|00240
family containing a UBA PF|00627 domain. EST gb|H37284
comes from this gene [Arabidopsis thaliana]
Length = 246
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 129/278 (46%), Positives = 166/278 (59%), Gaps = 40/278 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K TA + P S T A P+T AVP S
Sbjct: 61 ENKVTEEGFLVVMLSKSK----------TASSAGPSS---TQLAAPSTTQSIAVPASNST 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P T++S YG AAS LV+G+++E +QQI++MGGG+WD++TV R
Sbjct: 108 PVQEQP------------TAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTR 155
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAV+YLYSGIPE + P G G + T P P S GPN
Sbjct: 156 ALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGR-------ELTAPPP--SGGPN 205
Query: 242 ANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVL 277
++PLDLFPQ + S AAG G+L+FLR + Q ++
Sbjct: 206 SSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQVVII 240
>gi|357138066|ref|XP_003570619.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 368
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/288 (48%), Positives = 180/288 (62%), Gaps = 23/288 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+ DT+ VK IE +QG D YP QQ+LI+ GK+LKD++TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQQNDTIMAVKKNIEEIQGKDNYPWGQQLLIHTGKILKDESTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
EN+V+E+ +V+ML+K+K + S P+ P + P A A +++VP +T
Sbjct: 61 ENQVSEDGSLVVMLSKSKA-SVSSGASSAQPSSIPVTRQAPPDAQ-IQAAESSVPPTT-- 116
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P PA +++V H AS+L++G+NL+ I QI++MGGG+WDRD V R
Sbjct: 117 TSQPERPPAETPLNTVD---------HVASDLLSGSNLDTMINQIMEMGGGSWDRDKVQR 167
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG-P 240
ALRAAYNNPERAV+YLYSGIP AEV P Q ANS P P SG P
Sbjct: 168 ALRAAYNNPERAVDYLYSGIPVTAEV----AVPVGPQGANSTDAAP----PGVTGLSGIP 219
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
N PL+LFPQG GAAG GSLDFLRN+ QFQ LR MV NPQ+
Sbjct: 220 NTAPLNLFPQGAS-NAGGAAGGGSLDFLRNNQQFQALREMVHTNPQIL 266
>gi|212274727|ref|NP_001130219.1| uncharacterized protein LOC100191313 [Zea mays]
gi|194688580|gb|ACF78374.1| unknown [Zea mays]
gi|414885363|tpg|DAA61377.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
gi|414885364|tpg|DAA61378.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 225
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/202 (58%), Positives = 145/202 (71%), Gaps = 10/202 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE++Q YPA QQ+LI+QGKVLKDDTTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTA----VPI 117
EN+V EN+F+VIML +NK GS+ S AP K + AP+ PAT PQT+ P
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSS-SAAPAKVTANQAPSTQTVPATPPQTSAAPDAPA 114
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
P AP +++ +V+ ++E+ YG A SNLVAG+NLEG I+ IL+MGGGTWDRD
Sbjct: 115 PIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRD 174
Query: 178 TVVRALRAAYNNPERAVEYLYS 199
TV+RALRAAYNNPERAVEYLYS
Sbjct: 175 TVLRALRAAYNNPERAVEYLYS 196
>gi|326529487|dbj|BAK04690.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/287 (48%), Positives = 174/287 (60%), Gaps = 22/287 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+ DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQHNDTIMAVKKNIEEIQGKDSYPWGQQLLIHNGKVLKDESTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
EN+V E F+V+ML+K+K S P+ P +S P A P +
Sbjct: 61 ENQVGEAGFLVVMLSKSKASA-SSGGSSAQPSSTPVTSQAPPVAQPQAPQPQVPSTT--- 116
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P PA +S+V AAS+L++G+NL+ I QI++MGGG+WDRD V R
Sbjct: 117 TSQPERPPAETPLSTVDI---------AASDLLSGSNLDTMINQIMEMGGGSWDRDKVQR 167
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERA++YLYSGIP AEV P GQ AN+ P T + + PN
Sbjct: 168 ALRAAYNNPERAIDYLYSGIPVTAEV----AVPVVGQGANTTAAAPGETGLSGI----PN 219
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
PLDLFPQG GAAG GSLDFLRN+ QFQ LR MV NPQ+
Sbjct: 220 TAPLDLFPQGAS-HAGGAAGGGSLDFLRNNQQFQALREMVHTNPQIL 265
>gi|388499670|gb|AFK37901.1| unknown [Medicago truncatula]
Length = 215
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/219 (57%), Positives = 146/219 (66%), Gaps = 17/219 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKGT F+++V DTV DVK IE QG+ VYPAAQQMLI+QGKVLKD+TTLE
Sbjct: 1 MKINVKTLKGTHFEIQVNLHDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPI-ST 119
EN+VAENSF+VIML+KNK +G + + P P SS P P +TP P+ ST
Sbjct: 61 ENQVAENSFIVIMLSKNKVSSSGASAASAAPPAVQPASSLPPPLSTPQ-------PLAST 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PA + E SNL+AG+ LE IQQIL+MGGG+WDRDTV
Sbjct: 114 VGQGESNPAQGPVVTPPTTVVPE--------SNLIAGSTLEPTIQQILEMGGGSWDRDTV 165
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQ 218
+RALRAAYNNPERAVEYLYSGIPEQAE VA + GQ
Sbjct: 166 IRALRAAYNNPERAVEYLYSGIPEQAEAPAVAASTNVGQ 204
>gi|194690718|gb|ACF79443.1| unknown [Zea mays]
gi|414589469|tpg|DAA40040.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 365
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 169/306 (55%), Gaps = 53/306 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV+P D V VK IE +Q YPA QQ+LI+QGK
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGK--------- 51
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
NK + ++TA P + P + AP PI P
Sbjct: 52 ----------------NKGSSSAAPAKTTANQAPPTQTVPVVPPQTSAAPAAPAPIV--P 93
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A +++ +V+ ++E+ YG AASNLVAG+NLEG IQ IL+MGGG WDRDTV+R
Sbjct: 94 VSALAATATASAAPAVAVSTEADSYGQAASNLVAGSNLEGTIQSILEMGGGIWDRDTVLR 153
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP--QPTQPAPVTS-- 237
ALR AYNNPERAVEYLYSGIPEQ +V PT P QP P
Sbjct: 154 ALRVAYNNPERAVEYLYSGIPEQMDV---------------PTSPPSIQPVNPVQAAQAA 198
Query: 238 -----SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCF 291
SGPNANPLDLFPQ LP+ S AG G+LD LRN+ QFQ L +VQANPQ+ P
Sbjct: 199 QTAAPSGPNANPLDLFPQSLPN-ASANAGTGNLDVLRNNVQFQNLLGLVQANPQILQPLL 257
Query: 292 KSWGNK 297
+ G +
Sbjct: 258 QELGKQ 263
>gi|413926352|gb|AFW66284.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 296
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 120/263 (45%), Positives = 156/263 (59%), Gaps = 48/263 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIML----------TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP 111
ENKV E+ F+V+ML T + + + +TR P +APQ AP P P T
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQHSNTPATRQAPPLEAPQ-QAPQPPVAPIT-- 117
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+++P P AP + + +AASNL++G N++ I Q+++MGG
Sbjct: 118 ------TSQPEGLPAQAPNT--------------HDNAASNLLSGRNVDTIINQLMEMGG 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
G+WD+D V RALRAAYNNPERAVEYLYSGIP AE+ P GQ AN+ T
Sbjct: 158 GSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIA----VPIGGQGANT-------TD 206
Query: 232 PAPVTSSG----PNANPLDLFPQ 250
AP +G PN PLDLFPQ
Sbjct: 207 RAPTGEAGLSGIPNTAPLDLFPQ 229
>gi|388511083|gb|AFK43607.1| unknown [Lotus japonicus]
Length = 228
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 99/136 (72%), Positives = 108/136 (79%), Gaps = 4/136 (2%)
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
IQQILDMGGG+WDRDTVVRALRAA+NNPERAV+YLYSGIPEQAE PV + P + Q N
Sbjct: 2 IQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEAPPVTQMPASAQPGNP 61
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
P P Q A V SSGPNANPLDLFPQGLP+VGSG AGAGSLDFLRNS QFQ LRAMVQ
Sbjct: 62 PAAAP---QLANVPSSGPNANPLDLFPQGLPNVGSGPAGAGSLDFLRNSQQFQALRAMVQ 118
Query: 283 ANPQLF-PCFKSWGNK 297
ANPQ+ P + G +
Sbjct: 119 ANPQILQPMLQELGKQ 134
>gi|194698296|gb|ACF83232.1| unknown [Zea mays]
gi|413926353|gb|AFW66285.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 185
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 130/208 (62%), Gaps = 33/208 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIML----------TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP 111
ENKV E+ F+V+ML T + + + +TR P +APQ AP P P T
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQHSNTPATRQAPPLEAPQ-QAPQPPVAPIT-- 117
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+++P P AP + + +AASNL++G N++ I Q+++MGG
Sbjct: 118 ------TSQPEGLPAQAPNT--------------HDNAASNLLSGRNVDTIINQLMEMGG 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYS 199
G+WD+D V RALRAAYNNPERAVEYLYS
Sbjct: 158 GSWDKDKVQRALRAAYNNPERAVEYLYS 185
>gi|402896747|ref|XP_003911450.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Papio
anubis]
Length = 409
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 171/322 (53%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA PT PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPTEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|387017980|gb|AFJ51108.1| UV excision repair protein RAD23 homolog A-like [Crotalus
adamanteus]
Length = 360
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 158/287 (55%), Gaps = 49/287 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
+ +KTL+ +F + ++P++TV +K KIE +G + +P + Q LIY GK+L DD ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPDETVRVLKEKIEAEKGKEAFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATA---PQTAVPISTE 120
K+ E +FVV+M+TKNK TG G+ S+ PT A ++ PTP++ P A P A P S E
Sbjct: 65 KIDEKNFVVVMVTKNK--TGSGAPVSS-PTDAAPTAEPTPSSGPTAATVSPLQASPSSEE 121
Query: 121 --PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P + T +P ++V SV ++ G AAS LV G+ E + +I+ MG ++R+
Sbjct: 122 KPPEESVTVSPLESTVGSVPSSGSMGREDDAASTLVTGSEYETMLTEIMSMG---YERER 178
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT-QPAPVTS 237
VV ALRA+YNNP RAVEYL +GI PG+ + +P Q QP QPAP
Sbjct: 179 VVAALRASYNNPHRAVEYLLTGI------------PGSSEPERAPIQESQPQDQPAP--- 223
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
G L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ----------------------EGENPLEFLRDQPQFQNMRQVIQQN 248
>gi|61370793|gb|AAX43553.1| RAD23-like B [synthetic construct]
Length = 410
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 171/322 (53%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T +PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGVPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|90079451|dbj|BAE89405.1| unnamed protein product [Macaca fascicularis]
Length = 409
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 171/322 (53%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P ++ P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASSTPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|18089249|gb|AAH20973.1| RAD23B protein [Homo sapiens]
gi|61361084|gb|AAX41987.1| RAD23-like B [synthetic construct]
gi|123994101|gb|ABM84652.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|124126815|gb|ABM92180.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
Length = 409
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 171/322 (53%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T +PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGVPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|410225240|gb|JAA09839.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 172/322 (53%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPA---- 104
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA
Sbjct: 61 EYKIEEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPT 120
Query: 105 ATPATAPQTAVPISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+TPA+ P + S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASIPPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|54696272|gb|AAV38508.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|54696274|gb|AAV38509.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|60654195|gb|AAX29790.1| RAD23-like B [synthetic construct]
gi|60831141|gb|AAX36959.1| RAD23-like B [synthetic construct]
gi|61365892|gb|AAX42780.1| RAD23-like B [synthetic construct]
gi|61365900|gb|AAX42781.1| RAD23-like B [synthetic construct]
Length = 410
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 170/322 (52%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|194374237|dbj|BAG57014.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 170/322 (52%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTATT------------TTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B isoform 1 [Homo sapiens]
gi|397479268|ref|XP_003810947.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pan paniscus]
gi|426362613|ref|XP_004048452.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Gorilla gorilla gorilla]
gi|1709985|sp|P54727.1|RD23B_HUMAN RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=hHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens]
gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens]
gi|60819839|gb|AAX36514.1| RAD23-like B [synthetic construct]
gi|61363174|gb|AAX42348.1| RAD23-like B [synthetic construct]
gi|119579421|gb|EAW59017.1| RAD23 homolog B (S. cerevisiae), isoform CRA_b [Homo sapiens]
gi|193785017|dbj|BAG54170.1| unnamed protein product [Homo sapiens]
gi|261858390|dbj|BAI45717.1| RAD23 homolog B [synthetic construct]
Length = 409
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 170/322 (52%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|387849175|ref|NP_001248717.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815240|gb|AFE79494.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815242|gb|AFE79495.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815244|gb|AFE79496.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815246|gb|AFE79497.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|383410191|gb|AFH28309.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|384942154|gb|AFI34682.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 409
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 170/322 (52%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|383420441|gb|AFH33434.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 372
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 169/322 (52%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAPTKAP-----------QSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTATT------------TTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|410259964|gb|JAA17948.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 170/322 (52%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|62898690|dbj|BAD97199.1| UV excision repair protein RAD23 homolog B variant [Homo sapiens]
Length = 409
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 170/322 (52%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+R VEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRGVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T +PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGVPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|363744612|ref|XP_429175.3| PREDICTED: UV excision repair protein RAD23 homolog B [Gallus
gallus]
Length = 403
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 158/319 (49%), Gaps = 54/319 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNK------------RPTGEGSTRSTAPTKAPQSSAPTPA----- 104
E K+ E +FVV+M+TK K T S + APT +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAATAATTATQQTNSTTGVSVTTAAPTPVSAPTPAAAPVPAPD 120
Query: 105 ------------ATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASN 152
+ P + P+ P + +P APT S++ S+ TS S ++ A S
Sbjct: 121 PTTPAPAAVACESEPVSTPKEEKP-AEKPADAPTAVSLSSNESTTGDTSRSNLFEDAISA 179
Query: 153 LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GI
Sbjct: 180 LVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI----------- 225
Query: 213 APGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSP 272
PG+ QA PTQ S+G + + + + G L+FLRN P
Sbjct: 226 -PGDNQAVAEPTQ---------AASTGTSQSSAVAAAVATIPTTATSLGGHPLEFLRNQP 275
Query: 273 QFQVLRAMVQANPQLFPCF 291
QFQ +R ++Q NP L P
Sbjct: 276 QFQQMRQIIQQNPSLLPAL 294
>gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus]
gi|20380714|gb|AAH27747.1| RAD23b homolog (S. cerevisiae) [Mus musculus]
gi|148670319|gb|EDL02266.1| RAD23b homolog (S. cerevisiae), isoform CRA_c [Mus musculus]
gi|1587278|prf||2206377B MHR23B gene
Length = 416
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 159/328 (48%), Gaps = 64/328 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP------------------ 103
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTTVSSSPAVAAAQAPAPT 114
Query: 104 -----AATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALAPTSTPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FLRN PQFQ +R ++Q NP L P
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPAL 302
>gi|332222429|ref|XP_003260372.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Nomascus leucogenys]
Length = 409
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 169/322 (52%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQLTFWIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAPTKAP-----------QSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVPIS----TEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S +EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASVTASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|148226348|ref|NP_001082494.1| RAD23 homolog B [Xenopus laevis]
gi|28277263|gb|AAH44089.1| MGC53561 protein [Xenopus laevis]
gi|28278600|gb|AAH44115.1| MGC53561 protein [Xenopus laevis]
Length = 412
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 162/330 (49%), Gaps = 65/330 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G+D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGNDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQS----------------------- 98
E K+ E +FVV+M+TK K G+ +AP+ A
Sbjct: 61 EYKIDEKNFVVVMVTKPK-----GAACPSAPSPAVSQPVSAAAPAPASPPLTYTPIARQN 115
Query: 99 -----------------SAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATS 141
+APT + TAP+ P +P T +P+S S + +S
Sbjct: 116 APIPLPVPLPLPTVSAPAAPTSELSTTTAPKEEKPEEKTVSPPETESPSSTECSLPTDSS 175
Query: 142 ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GI
Sbjct: 176 RPSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI 232
Query: 202 PEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAG 261
P +E Q VA P A S T PT+P PV + + + G
Sbjct: 233 PSDSEGQAVAEPP----EALSST----PTEPLPVAAGAAATT---------TVPSTPSTG 275
Query: 262 AGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
LDFL+N PQFQ +R ++Q NP L P
Sbjct: 276 GNPLDFLQNQPQFQQMRQIIQQNPSLLPAL 305
>gi|74195673|dbj|BAE39643.1| unnamed protein product [Mus musculus]
Length = 327
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 159/328 (48%), Gaps = 64/328 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP------------------ 103
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 104 -----AATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FLRN PQFQ +R ++Q NP L P
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPAL 302
>gi|291382841|ref|XP_002708173.1| PREDICTED: UV excision repair protein RAD23 homolog B [Oryctolagus
cuniculus]
Length = 409
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 164/321 (51%), Gaps = 51/321 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEG-------------STRSTAPTKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K T + S+ T Q+S P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSATTTAVSSSTATAVTQASTPAPALAPT 120
Query: 109 TAPQTAVPIST---EPTPA-------PTPAPASASVS--------SVSATSESGVYGHAA 150
+ P + P ST EP PA P P V+ + +S S ++ A
Sbjct: 121 STPASIAPASTTSSEPAPASATKQEKPAEKPVETPVATSPTSTDSTSGDSSRSNLFEDAT 180
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V
Sbjct: 181 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 237
Query: 211 ARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRN 270
P QAA T PQ + A ++ + ++G L+FLRN
Sbjct: 238 VEPP---QAAG--TGAPQSSAVAAGAATTTAT------------TTTTSSGGHPLEFLRN 280
Query: 271 SPQFQVLRAMVQANPQLFPCF 291
PQFQ +R ++Q NP L P
Sbjct: 281 QPQFQQMRQIIQQNPSLLPAL 301
>gi|45829444|gb|AAH68193.1| Rad23b protein [Mus musculus]
Length = 415
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/334 (32%), Positives = 161/334 (48%), Gaps = 64/334 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP------------------ 103
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 104 -----AATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLFPCFKSWGNK 297
L+FLRN PQFQ +R ++Q NP L + G +
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLALLQQIGRE 308
>gi|171906578|ref|NP_033037.2| UV excision repair protein RAD23 homolog B [Mus musculus]
gi|341941948|sp|P54728.2|RD23B_MOUSE RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=mHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|74144435|dbj|BAE36067.1| unnamed protein product [Mus musculus]
gi|74144449|dbj|BAE36071.1| unnamed protein product [Mus musculus]
gi|74145328|dbj|BAE36124.1| unnamed protein product [Mus musculus]
gi|74211909|dbj|BAE29298.1| unnamed protein product [Mus musculus]
Length = 416
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 159/328 (48%), Gaps = 64/328 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP------------------ 103
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 104 -----AATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FLRN PQFQ +R ++Q NP L P
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPAL 302
>gi|74178713|dbj|BAE34014.1| unnamed protein product [Mus musculus]
Length = 416
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 159/328 (48%), Gaps = 64/328 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP------------------ 103
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 104 -----AATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FLRN PQFQ +R ++Q NP L P
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPAL 302
>gi|74209288|dbj|BAE25006.1| unnamed protein product [Mus musculus]
Length = 411
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 159/328 (48%), Gaps = 64/328 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP------------------ 103
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 104 -----AATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FLRN PQFQ +R ++Q NP L P
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPAL 302
>gi|168046898|ref|XP_001775909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672741|gb|EDQ59274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 109/202 (53%), Gaps = 37/202 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD++V P +TV +VK +IE QG ++P AQQ+LIYQGKVLKD+TT+E
Sbjct: 1 MKISVKTLKGNYFDLDVTPLETVINVKKRIEDSQGEQLFPCAQQLLIYQGKVLKDETTME 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEG----STRSTAPTKAPQSSAPTPAATPATAPQTAVPI 117
+NKV EN F V+ML+K +G S R+ K + T V
Sbjct: 61 DNKVLENEFFVVMLSKTSNILKQGLCNLSMRAFFCVKYLNQHSGIGKGTAHFQSSRNV-- 118
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
NLVAG NLE Q+ILD+GGG+WD D
Sbjct: 119 -------------------------------CCFNLVAGINLESKAQEILDIGGGSWDFD 147
Query: 178 TVVRALRAAYNNPERAVEYLYS 199
TVV ALRAA NN ERA+EYL S
Sbjct: 148 TVVHALRAASNNVERALEYLSS 169
>gi|255636258|gb|ACU18469.1| unknown [Glycine max]
Length = 160
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/107 (72%), Positives = 94/107 (87%), Gaps = 2/107 (1%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DTV +VK IETVQG+DVYPAAQQMLI+QGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP-TKAPQSSAPTPAATP 107
ENKV EN+F+VIML+K+K P+GEGST STAP TKAPQ+S PA+TP
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTST-VPASTP 106
>gi|217069976|gb|ACJ83348.1| unknown [Medicago truncatula]
Length = 159
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/159 (62%), Positives = 117/159 (73%), Gaps = 4/159 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DT+ VK IETVQG DVYPAAQQMLI+QGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTA-PTKAPQSSA---PTPAATPATAPQTAVPI 117
ENKVAENSF+VIML+K+K +G+GST S A P KAPQ+SA TP + + A
Sbjct: 61 ENKVAENSFIVIMLSKSKPASGKGSTTSNAPPAKAPQTSAAPTSTPPVSVSPQAPAATAA 120
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAG 156
AP+PAPA A +SS +AT S VYG AASNLVAG
Sbjct: 121 PPASVAAPSPAPAPAPISSATATEGSDVYGQAASNLVAG 159
>gi|57094213|ref|XP_538778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Canis lupus familiaris]
Length = 406
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 161/322 (50%), Gaps = 55/322 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRST-------------------------APTK 94
E K+ E +FVV+M+TK K T +T+ + APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVLAPTP 120
Query: 95 APQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSAT----SESGVYGHAA 150
+P S P PA + AP T+V +P P P + S ++ +T S S ++ A
Sbjct: 121 SPASVTPAPATSSEPAP-TSVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDAT 179
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V
Sbjct: 180 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 236
Query: 211 ARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS-LDFLR 269
P P S+G + + + A+ G L+FLR
Sbjct: 237 VDTP-------------------PAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFLR 277
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 278 NQPQFQQMRQIIQQNPSLLPAL 299
>gi|384248073|gb|EIE21558.1| UV excision repair protein Rad23 [Coccomyxa subellipsoidea C-169]
Length = 382
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/299 (40%), Positives = 168/299 (56%), Gaps = 18/299 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+K+ KT++G F++E+ D + +VK KIE VQG+D +PAA Q++IYQGKVLKDDTTLE
Sbjct: 4 VKVTFKTVQGNKFELELDSSDKIENVKQKIEGVQGAD-FPAANQVIIYQGKVLKDDTTLE 62
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENK+ +FVV+M+ + + ++ +P K ++ T A PA A TA
Sbjct: 63 ENKITHENFVVVMIQR--------ARKAASPKKEEPAAPTTTAPAPAEAAPTA---PAAE 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASN-LVAGNNLEGAIQQILDMGGGTWDRDTVV 180
PA P A+ ++ +A + G SN L+ G LE I I++MG +DR+ VV
Sbjct: 112 VPAQQPRAAAVPAAAAAAPAAGAAAGDLNSNSLLMGTQLESTIAGIVEMG---FDREEVV 168
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+NNP+RAVEYL +GIP E A A S +SGP
Sbjct: 169 RAMRAAFNNPDRAVEYLMTGIPNNVEAPAPAPGASPAAGAVSAAPAAGTPATGGGPASGP 228
Query: 241 NANPLDLF-PQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
NA PLD+F PQ G AG LDFLR++PQF LR +VQ+NP + P + G +
Sbjct: 229 NAQPLDMFAPQAPAGAGGAGGAAGPLDFLRSNPQFIALRQIVQSNPMILQPMLQELGKQ 287
>gi|427787569|gb|JAA59236.1| Putative nucleotide excision repair factor nef2 rad23 component
[Rhipicephalus pulchellus]
Length = 397
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 163/300 (54%), Gaps = 24/300 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +EV P +TV K +IE +G D YPA Q LIY GK+L DD+ +
Sbjct: 1 MIVTLKTLQQQTFKIEVDPSETVKVFKERIEEKKGKD-YPAHCQKLIYAGKILSDDSKMS 59
Query: 62 ENKVAENSFVVIMLTKNKRPT-------GEGSTRSTAPTKAPQSSAPTPAATPATAPQTA 114
E ++ E FVVIM+TK K+ G G+T + A P +A T A A P
Sbjct: 60 EYEIDEKKFVVIMVTKPKQSVDATAVTPGPGATSTVASAGTPSPAAGTQPAAEAQKP-AE 118
Query: 115 VPISTEPTPAPTPAPASASV-SSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
P T +PA +PA ++A+ +S A +E+ AAS LV G+ E +QQI++MG
Sbjct: 119 TPSGTSKSPAQSPAHSAATTPTSRPAAAETAGLAMAASALVMGDEYERMVQQIMEMG--- 175
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPG-NGQAANSPTQMPQPTQP 232
++R V RALRA++NNP+RAVEYL +GIP ++ P + G ++ +P +P T
Sbjct: 176 YERPQVERALRASFNNPDRAVEYLLTGIPP-SQQDPAEESHGATEESEEAPRSVPSDT-- 232
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGS----LDFLRNSPQFQVLRAMVQANPQLF 288
S P + G P + AA G+ L FLR PQFQ +R ++Q NPQL
Sbjct: 233 ---AMSSPQSQHGTTGGGGGPLEAALAAEGGNPEDPLAFLRFQPQFQQMRQVIQQNPQLL 289
>gi|147773186|emb|CAN62701.1| hypothetical protein VITISV_007064 [Vitis vinifera]
Length = 349
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/158 (56%), Positives = 109/158 (68%), Gaps = 7/158 (4%)
Query: 146 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQA 205
YG AASN+V+ N+LE IQQI+D+GGG WD++TV RALRAAYNNPERAV+YLYSGIPE A
Sbjct: 165 YGQAASNIVSANHLEQTIQQIMDIGGGNWDKETVTRALRAAYNNPERAVDYLYSGIPEAA 224
Query: 206 EVQ-PVARAPGNGQAA--NSPT--QMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAA 260
EV PVA P + + NS T PA S PN++PL++FPQ G+ A
Sbjct: 225 EVAVPVAHFPADQETGGINSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQETLS-GAAAG 283
Query: 261 GAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
G GSL+FLRN+ QFQ LRAMVQANPQ+ P + G +
Sbjct: 284 GLGSLEFLRNNHQFQALRAMVQANPQILQPMLQELGKQ 321
>gi|417400397|gb|JAA47148.1| Putative nucleotide excision repair factor nef2 rad23 component
[Desmodus rotundus]
Length = 408
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 159/322 (49%), Gaps = 53/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNK-------------RPTGEGSTRSTAPTKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K P + S+ Q PTPA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPTTTQQSNPATTTTISSSTAPAVAQVPTPTPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPASASVSSVSATS--------ESGVYGHA 149
P + P +S+E PA P PA V++ ++ S ++ A
Sbjct: 121 PTPASVTPASTTVSSESAPASATKQENPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P PA T+ P ++ + ++G L+FLR
Sbjct: 238 VVDPP-----------------PA-ATTGAPQSSVAAAAATTTATTTTTSSGGHPLEFLR 279
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 280 NQPQFQQMRQIIQQNPSLLPAL 301
>gi|348535033|ref|XP_003455006.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 373
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 166/298 (55%), Gaps = 35/298 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F +++ E+TV +K +IE +G +++ A Q LIY GK+L DD+ L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVRTLKERIEQEKGKEIFSVAGQKLIYAGKILSDDSPLK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA---TPATAPQTAVPIS 118
E K+ E +FVV+M+TK K+ T S T AP S PAA + +T+ + A S
Sbjct: 61 EYKIDEKNFVVVMVTKPKK----APTASQPSTAAPAPSTTAPAAQSDSSSTSDKPAEQSS 116
Query: 119 TEPTPAPT-PAPASASVSSVSATSESG-VYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
T+ P + P+ AS +SV + ++ + A SNLV G++ + + +++ MG ++R
Sbjct: 117 TDDKPEESQPSTTEASSTSVGRSGDAANLISEAVSNLVTGSSYDAMVNEMMLMG---YER 173
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN--GQAANSPTQMPQPTQPAP 234
+ VV ALRA++NNP+RA+EYL +GIP +R GN G+ A +P P PA
Sbjct: 174 EQVVAALRASFNNPDRAMEYLLTGIP--------SRNQGNASGRDAVAPPASGTPAVPAG 225
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGS-LDFLRNSPQFQVLRAMVQANPQLFPCF 291
S+ N S +AG G+ L FLRN PQFQV+R ++Q N L P
Sbjct: 226 NASAPANTR------------SSPSAGGGNPLSFLRNQPQFQVMRQLIQQNAALLPAL 271
>gi|348570354|ref|XP_003470962.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Cavia
porcellus]
Length = 409
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 162/322 (50%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT-------------GEGSTRSTAPTKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K T + S+ T Q+S P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSSPVSTTTVSSSTATAVAQASTPAPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-----------PTPAPASASVSSVSAT----SESGVYGHA 149
+ P P S+EP PA P P ++S +S T S S ++ A
Sbjct: 121 STPAPIAPAVTTASSEPVPASAAQQEKPAEKPAETPPASSPTSTDNTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T + + + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--------------TGAPQASAVAAAGATTTAATTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>gi|148225642|ref|NP_001089431.1| uncharacterized protein LOC734481 [Xenopus laevis]
gi|63101219|gb|AAH94481.1| MGC115064 protein [Xenopus laevis]
Length = 419
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 168/332 (50%), Gaps = 59/332 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G D +P A Q LIY GK+L DD L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDIALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKA----------------------PQSS 99
E K+ E +FVV+M+TK K G++ S+AP+ A + +
Sbjct: 61 EYKIDEKNFVVVMVTKPK-----GASCSSAPSPATSQPASAASPAPASPPLTYTPIARQN 115
Query: 100 APTPAATPATAPQTAVPI--STEPT----------------PAPTPAPASASVSSVSATS 141
AP P P + P P ++EP+ P T +P+S S + +S
Sbjct: 116 APIPLPVPFSLPTVPTPAAPTSEPSTTTAPEEEKPEEKTVSPPETVSPSSTECSLPTDSS 175
Query: 142 ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GI
Sbjct: 176 RPSIFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI 232
Query: 202 PEQAEVQPVARAPGNGQAANSPTQMPQPTQPA--PVTSSGPNANPLDLFPQGLPDVGSGA 259
P E Q VA P +++PT P TQP P+ ++ A + +
Sbjct: 233 PSDREDQAVAEPPEA--LSSTPTLTPPLTQPLTQPLPAAAGAAA-------TTTTPSTPS 283
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
G LDFL+N PQFQ +R ++Q NP L P
Sbjct: 284 TGGNPLDFLQNQPQFQQMRQIIQQNPSLLPAL 315
>gi|126723729|ref|NP_001075850.1| protein RAD23 repair 23 (2L942) [Oryctolagus cuniculus]
gi|1857435|gb|AAB48442.1| oncogene [Oryctolagus cuniculus]
Length = 748
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 148/294 (50%), Gaps = 51/294 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++PE+TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--------TPATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SSA +PAA PAT +
Sbjct: 65 RIDEKNFVVVMVTKAKAGQGSSAPPEASPTAAPESSATSPAAPASGMSHPPPATREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
AG L+FLR+ PQFQ +R ++Q NP L P
Sbjct: 224 ----------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLP 255
>gi|70778952|ref|NP_001020446.1| UV excision repair protein RAD23 homolog B [Rattus norvegicus]
gi|123789085|sp|Q4KMA2.1|RD23B_RAT RecName: Full=UV excision repair protein RAD23 homolog B
gi|68534740|gb|AAH98674.1| RAD23 homolog B (S. cerevisiae) [Rattus norvegicus]
gi|149037170|gb|EDL91701.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 158/325 (48%), Gaps = 58/325 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTG----------------------------EGSTRSTAPT 93
E K+ E +FVV+M+TK K T T + APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT 120
Query: 94 KAPQSSAPT-------PAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVY 146
P S+ P PA T AT P+ + +PAPA S+ +S S ++
Sbjct: 121 STPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPAD---STPGDSSRSNLF 177
Query: 147 GHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E
Sbjct: 178 EDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRE 234
Query: 207 VQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLD 266
Q V P P V++ P + + + +G L+
Sbjct: 235 SQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGHPLE 277
Query: 267 FLRNSPQFQVLRAMVQANPQLFPCF 291
FLRN PQFQ +R ++Q NP L P
Sbjct: 278 FLRNQPQFQQMRQIIQQNPSLLPAL 302
>gi|126335852|ref|XP_001374067.1| PREDICTED: UV excision repair protein RAD23 homolog B [Monodelphis
domestica]
Length = 411
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 162/325 (49%), Gaps = 55/325 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKR---------------PTGEGSTRSTAPTKAPQSSAPTPAA- 105
E K+ E +FVV+M+TK K P + S+ Q+ P+PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAATSAPSPATTQQSIPATTSTVSSSTAASVAQAPTPSPALA 120
Query: 106 -------------------TPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVY 146
P +AP+ P + +P AP ++S S++ +S S ++
Sbjct: 121 PTPTPTSVTPTPAAAVCEPIPTSAPKEEKP-AEKPVEAPIGVSPTSSDSTLGDSSRSNLF 179
Query: 147 GHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E
Sbjct: 180 EDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRE 236
Query: 207 VQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLD 266
Q V P QAA++ A T++ + +G L+
Sbjct: 237 NQSVVDPP---QAASTGAAQSSAVAAAAATTTATTT-------------TTTTSGGHPLE 280
Query: 267 FLRNSPQFQVLRAMVQANPQLFPCF 291
FLRN PQFQ +R ++Q NP L P
Sbjct: 281 FLRNQPQFQQMRQIIQQNPSLLPAL 305
>gi|71896193|ref|NP_001025578.1| RAD23 homolog B [Xenopus (Silurana) tropicalis]
gi|60551813|gb|AAH91020.1| rad23b protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 158/330 (47%), Gaps = 65/330 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDGEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP----------------------QSS 99
E K+ E +FVV+M+TK K G+ S+ PT A + +
Sbjct: 61 EYKIDEKNFVVVMVTKPK-----GAACSSTPTPAASQPASAAAPAPASPPLTYTPIARQN 115
Query: 100 APTPAATP------------------ATAPQTAVPISTEPTPAPTPAPASASVSSVSATS 141
AP P P TAP+ P +P T +P+S S + +S
Sbjct: 116 APIPLPVPFSIPAVPAPAAPTSEPSTTTAPKEEKPEEKTDSPQETVSPSSTECSLPTDSS 175
Query: 142 ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GI
Sbjct: 176 RPSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI 232
Query: 202 PEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAG 261
P E Q VA P + PTQP P + + + G
Sbjct: 233 PSDREGQAVAEPPQTLSST--------PTQPLPAAAGAAATT---------TTPSTPSTG 275
Query: 262 AGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
LDFL+N PQFQ +R ++Q NP L P
Sbjct: 276 GNPLDFLQNQPQFQQMRQIIQQNPSLLPAL 305
>gi|41056115|ref|NP_956858.1| UV excision repair protein RAD23 homolog B [Danio rerio]
gi|33989500|gb|AAH56578.1| RAD23 homolog B (S. cerevisiae) [Danio rerio]
Length = 382
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 162/294 (55%), Gaps = 18/294 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATP----ATAPQTAVPI 117
E K+ E +FVV+M+TK K + S++ + + ++A AA + +P
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
+E P+ PAPA+ VSS S + + ++ A S LV G + E + +I+ MG ++RD
Sbjct: 121 PSEEKPSSDPAPATTPVSSGSLPN-ANIFEEATSALVTGQSYENMVTEIMLMG---YERD 176
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
VV ALRA++NNP+RAVEYL +GIP + E V + ++P P P ++S
Sbjct: 177 RVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTPASAPAPAISTGLSS 236
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
A P S A+GA L+FLRN PQF +R ++Q NP L P
Sbjct: 237 PSSTA----------PAQPSSASGANPLEFLRNQPQFLQMRQIIQQNPSLLPAL 280
>gi|149641954|ref|XP_001513724.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ornithorhynchus anatinus]
Length = 360
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 144/285 (50%), Gaps = 45/285 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++PE+TV +K KIE +G D +P A Q LIY GK+L DDT + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGQDAFPVAGQKLIYAGKILNDDTPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA--ATPAT--APQTAVPIST 119
K+ E +FVV+M+TK K G TAP P SAP + A P T +P+ P +
Sbjct: 65 KIDEKNFVVVMVTKTKSGLGTSVPPETAPASEPSVSAPAASIVAMPLTPSSPKEERPTAD 124
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT P P + SV S + G AAS LV G+ E + +I+ MG ++++ V
Sbjct: 125 NPTSLPPPETVTGSVPSSGSI---GREDDAASTLVTGSEYETMLTEIMSMG---YEQEQV 178
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA++NNP RAVEYL GIP G+ + P Q Q + A V
Sbjct: 179 VAALRASFNNPHRAVEYLLMGIP------------GSPEPEGGPIQESQSNEQAAV---- 222
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
G L+FLR+ PQFQ +R ++Q N
Sbjct: 223 -------------------EGGENPLEFLRDQPQFQNMRQVIQQN 248
>gi|114052667|ref|NP_001039775.1| UV excision repair protein RAD23 homolog B [Bos taurus]
gi|109892954|sp|Q29RK4.1|RD23B_BOVIN RecName: Full=UV excision repair protein RAD23 homolog B
gi|88954168|gb|AAI14134.1| RAD23 homolog B (S. cerevisiae) [Bos taurus]
gi|296484403|tpg|DAA26518.1| TPA: UV excision repair protein RAD23 homolog B [Bos taurus]
Length = 408
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 160/324 (49%), Gaps = 57/324 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNK-----RPTGEGSTRSTAPTKAPQSS----------------- 99
E K+ E +FVV+M+TK K P + S A T S+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPT 120
Query: 100 --------APTPAAT---PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
APT A++ PA+A + P + P P +++ S+ +S S ++
Sbjct: 121 PTPVSVTPAPTTASSEPAPASAAKQEKP-AERPVETPVATTPTSTDSTSGDSSRSNLFED 179
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLDF 267
V P P S+G P ++ + ++G L+F
Sbjct: 237 AV-------------------VDPPPAASTGAPQSSVAAAAATTTATTTTTSSGGHPLEF 277
Query: 268 LRNSPQFQVLRAMVQANPQLFPCF 291
LRN PQFQ +R ++Q NP L P
Sbjct: 278 LRNQPQFQQMRQIIQQNPSLLPAL 301
>gi|301762141|ref|XP_002916489.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ailuropoda melanoleuca]
Length = 408
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 161/325 (49%), Gaps = 59/325 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP--------------------------- 92
E K+ E +FVV+M+TK K T +T+ + P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPT 120
Query: 93 ------TKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVY 146
T AP +++ PA PA+A Q P + +P P +A+ S+ +S S ++
Sbjct: 121 PSPASVTPAPTTASSEPA--PASATQPEKP-AEKPAETPVATSPTATDSTSGDSSRSNLF 177
Query: 147 GHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP +
Sbjct: 178 EDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRD 234
Query: 207 VQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLD 266
Q V P PA V++ P ++ + G L+
Sbjct: 235 SQAVVDTP-----------------PA-VSTGAPPSSVAAAAATTTASTTTANPGGHPLE 276
Query: 267 FLRNSPQFQVLRAMVQANPQLFPCF 291
FLRN PQFQ +R ++Q NP L P
Sbjct: 277 FLRNQPQFQQMRQIIQQNPSLLPAL 301
>gi|392884282|gb|AFM90973.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 152/309 (49%), Gaps = 48/309 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL+ SF ++++PE V +K KIET +G D +P A Q LIY GK+L D+T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT---AVPI 117
E K+ E FVV+M+TK K P+ + + A PQ ++ TP PA++P VP
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASSPTATTETVPT 120
Query: 118 ST--EPTPAPTPAPAS-------------ASVSSVSATSESGVYGHAASNLVAGNNLEGA 162
+T E A P S +++ + SG++ A S LV G E
Sbjct: 121 NTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSGLFDVATSALVTGQQYETM 180
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+ +I MG + R+ VV AL+A++NNP+RAVEYL GIP G+ A S
Sbjct: 181 VTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIP--------------GERARS 223
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
PQ T T S A P + + L+FLRN PQF +R ++Q
Sbjct: 224 SVNNPQQTTGTACTGSAQPAAP------------APTSRENPLEFLRNQPQFHQMRQILQ 271
Query: 283 ANPQLFPCF 291
NP L P
Sbjct: 272 QNPSLLPAL 280
>gi|354499742|ref|XP_003511965.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Cricetulus griseus]
Length = 497
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 154/314 (49%), Gaps = 60/314 (19%)
Query: 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSF 70
G SF +VK +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +F
Sbjct: 95 GISFLGQVK------ALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNF 148
Query: 71 VVIMLTKNK--------------RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
VV+M+TK K P + STA T Q+ PTPA+ P + P + P
Sbjct: 149 VVVMVTKPKAVTTPVPATTQQSNTPATTAVSSSTA-TVVAQAPTPTPASAPTSTPASTTP 207
Query: 117 ----ISTEPTPA-------PTPAPASASVSSVSA--------TSESGVYGHAASNLVAGN 157
+S+EP PA P PA + V + A +S S ++ A S LV G
Sbjct: 208 ASTTVSSEPAPASAAQPEKPAEKPAQSPVVTSPAPADSTPGDSSRSNLFEDATSALVTGQ 267
Query: 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNG 217
+ E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P
Sbjct: 268 SYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP--- 321
Query: 218 QAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVL 277
P V++ P + + + +AG L+FLRN PQFQ +
Sbjct: 322 --------------PQAVSTGTPQSPAVAAAAATTTATTTSSAGGHPLEFLRNQPQFQQM 367
Query: 278 RAMVQANPQLFPCF 291
R ++Q NP L P
Sbjct: 368 RQIIQQNPSLLPAL 381
>gi|395823983|ref|XP_003785253.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Otolemur garnettii]
Length = 413
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 159/322 (49%), Gaps = 51/322 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNK--------RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT 113
E K+ E +FVV+M+TK K + S T ++ A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPAAAAAQQSNPVTTTPVTSSTATTVAQAPTPAPAPA 120
Query: 114 AVPISTEP---TPAPTPAPASASV---------------------SSVSATSESGVYGHA 149
+ P+S P T +P PAPASA+ S+ +S S ++ A
Sbjct: 121 STPVSVTPASTTTSPEPAPASATKQEKPAEKPAETPVATSPTPTDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA + T PQ + A + ++G L+FLR
Sbjct: 238 VVDPP---QAAGTGT--PQSS-----------AVAAAAATTTATTTTTTSSGGHPLEFLR 281
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 282 NQPQFQQMRQIIQQNPSLLPAL 303
>gi|194033860|ref|XP_001927901.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sus scrofa]
Length = 408
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 155/329 (47%), Gaps = 67/329 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT-------------------------------------GE 84
E K+ E +FVV+M+TK K T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPT 120
Query: 85 GSTRSTAPTKAPQSSAPTPA-ATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
+ S P SS P PA AT P + +P P +++ S+ +S S
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKP------AEKPAETPVATSPTSTDSTSGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGA 262
E Q V P P S+G P ++ + ++G
Sbjct: 232 DRESQAV-------------------VDPPPAASTGAPQSSVAAAAATTTATTTTTSSGG 272
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FLRN PQFQ +R ++Q NP L P
Sbjct: 273 HPLEFLRNQPQFQQMRQIIQQNPSLLPAL 301
>gi|355715051|gb|AES05209.1| RAD23-like protein B [Mustela putorius furo]
Length = 406
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 159/325 (48%), Gaps = 60/325 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGST---------------------------------- 87
E K+ E +FVV+M+TK K T +T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTPAPATTQQSSPATTTTVSSSTAPAVAQAPTPAPALAPTP 120
Query: 88 RSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYG 147
+ T AP +++ PA PA+A Q P + +P P +A+ S+ +S S ++
Sbjct: 121 SPASITPAPTTASSEPA--PASATQPEKP-AEKPAETPVATSPTATDSTSGDSSRSNLFE 177
Query: 148 HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV 207
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E
Sbjct: 178 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 234
Query: 208 QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS-LD 266
Q V P P S+G + + + A+ G L+
Sbjct: 235 QAVVDTP-------------------PAVSTGAPPSSVAAAAATTTASTTTASPGGHPLE 275
Query: 267 FLRNSPQFQVLRAMVQANPQLFPCF 291
FLRN PQFQ +R ++Q NP L P
Sbjct: 276 FLRNQPQFQQMRQIIQQNPSLLPAL 300
>gi|356557201|ref|XP_003546906.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 284
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 108/161 (67%), Gaps = 17/161 (10%)
Query: 146 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQA 205
YG AASNLVAG++LE IQQI+D+GGG+WDRDTV RALRAAYNNP+RAV+YLYS IPE A
Sbjct: 49 YGQAASNLVAGSSLEQTIQQIMDLGGGSWDRDTVSRALRAAYNNPKRAVDYLYSRIPEAA 108
Query: 206 EVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG-----PNANPLDLFPQGLPDVGSGAA 260
E+ A +P + Q T+ VT+ PN++PL++ PQ +P G+G A
Sbjct: 109 EIAVPA----------APYPISQTTETGGVTAGAVWGPVPNSSPLNMSPQVIPVSGAG-A 157
Query: 261 GAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNKILS 300
G GSL+ + +FQ LR+MVQ+NPQ+ P + G + LS
Sbjct: 158 GIGSLELYKKCQEFQALRSMVQSNPQILQPVLQELGKQNLS 198
>gi|224091533|ref|XP_002188381.1| PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia
guttata]
Length = 400
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 158/316 (50%), Gaps = 51/316 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L D+T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDETALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTG----------EGSTRSTAPTKAPQSSAPTPAATPATAP 111
E K+ E +FVV+M+TK K G GST + A P P P P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAGVTQPSNATSTVGSTTAAPTAVAAPIPVPAPVPAPVPPP 120
Query: 112 QTAVPISTEPTPAPTP----------------APASASVSSVSATSESGVYGHAASNLVA 155
++ EP P TP +P+S S+ TS S ++ A S LV
Sbjct: 121 PAPDAVACEPAPVSTPKEEKPEEKPPEAPAAVSPSSID-STTGDTSRSNLFEDAISALVT 179
Query: 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPG 215
G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GI PG
Sbjct: 180 GQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI------------PG 224
Query: 216 NGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQ 275
+ QA P PQP S+G + + + + G L+FLRN PQFQ
Sbjct: 225 DNQAVADP---PQP------PSTGASQSSAVAAAVATIPTTTSSLGGHPLEFLRNQPQFQ 275
Query: 276 VLRAMVQANPQLFPCF 291
+R ++Q NP L P
Sbjct: 276 QMRQIIQQNPSLLPAL 291
>gi|392884316|gb|AFM90990.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 151/309 (48%), Gaps = 48/309 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL+ SF ++++PE V +K KIET +G D +P A Q LIY GK+L D+T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT---AVPI 117
E K+ E FVV+M+TK K P+ + + A PQ ++ TP PA++P VP
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASSPTATTETVPT 120
Query: 118 ST--EPTPAPTPAPAS-------------ASVSSVSATSESGVYGHAASNLVAGNNLEGA 162
+T E A P S +++ + S ++ A S LV G E
Sbjct: 121 NTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTGQQYETM 180
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+ +I MG + R+ VV AL+A++NNP+RAVEYL GIP G+ A S
Sbjct: 181 VTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIP--------------GERARS 223
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
PQ T T S A P + + L+FLRN PQF +R ++Q
Sbjct: 224 SVNNPQQTTGTACTGSAQPAAP------------APTSRENPLEFLRNQPQFHQMRQILQ 271
Query: 283 ANPQLFPCF 291
NP L P
Sbjct: 272 QNPSLLPAL 280
>gi|392883134|gb|AFM90399.1| UV excision repair protein RAD23-like B protein [Callorhinchus
milii]
Length = 378
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 151/309 (48%), Gaps = 48/309 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL+ SF ++++PE V +K KIET +G D +P A Q LIY GK+L D+T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT---AVPI 117
E K+ E FVV+M+TK K P+ + + A PQ ++ TP PA++P VP
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASSPTATTETVPT 120
Query: 118 ST--EPTPAPTPAPAS-------------ASVSSVSATSESGVYGHAASNLVAGNNLEGA 162
+T E A P S +++ + S ++ A S LV G E
Sbjct: 121 NTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTGQQYETM 180
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+ +I MG + R+ VV AL+A++NNP+RAVEYL GIP G+ A S
Sbjct: 181 VTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIP--------------GERARS 223
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
PQ T T S A P + + L+FLRN PQF +R ++Q
Sbjct: 224 SVNNPQQTTGTACTGSAQPAAP------------APTSRENPLEFLRNQPQFHQMRQILQ 271
Query: 283 ANPQLFPCF 291
NP L P
Sbjct: 272 QNPSLLPAL 280
>gi|410978805|ref|XP_003995778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Felis catus]
Length = 408
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 106/323 (32%), Positives = 162/323 (50%), Gaps = 55/323 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP--------------TKAPQSSAP---- 101
E K+ E +FVV+M+TK K T +T+ + P + P S
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPT 120
Query: 102 ------TPAAT-------PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
TPA+T PA+A + P + +P P +++ S+ +S S ++
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKP-AEKPAETPVATSPTSTDSTSGDSSRSNLFED 179
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
V P PA V++ P ++ + + G L+FL
Sbjct: 237 AVVDTP-----------------PA-VSTGAPQSSVAAAAATTTASTTTASPGGHPLEFL 278
Query: 269 RNSPQFQVLRAMVQANPQLFPCF 291
RN PQFQ +R ++Q NP L P
Sbjct: 279 RNQPQFQQMRQIIQQNPSLLPAL 301
>gi|327264110|ref|XP_003216859.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Anolis
carolinensis]
Length = 364
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 148/291 (50%), Gaps = 53/291 (18%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
+ +KTL+ +F + ++PE+TV +K KIE +G D +P + Q LIY GK+L DD ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPEETVRVLKEKIEAEKGKDSFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA------TPATAPQTAVPI 117
K+ E +FVV+M+TKNK +G + P++A +S P P++ T A A
Sbjct: 65 KIDEKNFVVVMVTKNKAGSG---APAPLPSEATSTSEPAPSSGQTQLPTTAAASPPPAAP 121
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGH---AASNLVAGNNLEGAIQQILDMGGGTW 174
S E P P S S VS+ SG G AAS LV G+ E + +I+ MG +
Sbjct: 122 SGEEKPPEEPVTVSPQESIVSSIPPSGSMGREDDAASTLVTGSEYETMLTEIMSMG---Y 178
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQP-TQPA 233
+R+ VV ALRA+YNNP RAVEYL +GI PG+ + P Q QP QP
Sbjct: 179 ERERVVAALRASYNNPHRAVEYLLTGI------------PGSPEPERGPIQESQPQEQPV 226
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
P G L+FLR+ PQFQ +R ++Q N
Sbjct: 227 P-------------------------EGENPLEFLRDQPQFQNMRQVIQQN 252
>gi|431918433|gb|ELK17657.1| UV excision repair protein RAD23 like protein B [Pteropus alecto]
Length = 439
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 163/355 (45%), Gaps = 88/355 (24%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDT-------------------------------VFDVKMK 30
M++ +KTL+ +F +++ PE+T V +K K
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETHVQQKFSTLSEAPTLCPAPLFGLGTPTNSIIVKALKEK 60
Query: 31 IETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT-------- 82
IE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 61 IESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAPATTQ 120
Query: 83 ------GEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST----EPTPA-------P 125
+ STAP A Q+ PTPA P P + P ST EP PA P
Sbjct: 121 QSNSATTTTVSSSTAPAVA-QTPTPTPALAPTPTPASITPASTTASSEPAPASATKQENP 179
Query: 126 TPAPASASVS--------SVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
PA V+ + +S S ++ A S LV G + E + +I+ MG ++R+
Sbjct: 180 AEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YERE 236
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V+ ALRA++NNP+RAVEYL GIP E Q V P P S
Sbjct: 237 QVIAALRASFNNPDRAVEYLLMGIPGDRESQAV-------------------VDPPPAAS 277
Query: 238 SG-PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
+G P ++ + ++G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 278 TGAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 332
>gi|37595434|gb|AAQ94603.1| RAD23 homolog B [Danio rerio]
Length = 380
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 161/294 (54%), Gaps = 20/294 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATP----ATAPQTAVPI 117
E K+ E +FVV+M+TK K + S++ + + ++A AA + +P
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
+E P+ PAPA+ VSS S + + ++ A S L G + E + +I+ MG ++RD
Sbjct: 121 PSEEKPSSDPAPATTPVSSGSLPN-ANIFEEATSAL--GQSYENMVTEIMLMG---YERD 174
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
VV ALRA++NNP+RAVEYL +GIP + E V + ++P P P ++S
Sbjct: 175 RVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTPASAPAPAISTGLSS 234
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
A P S A+GA L+FLRN PQF +R ++Q NP L P
Sbjct: 235 PSSTA----------PAQPSSASGANPLEFLRNQPQFLQMRQIIQQNPSLLPAL 278
>gi|213512547|ref|NP_001135284.1| UV excision repair protein RAD23 homolog A [Salmo salar]
gi|209156014|gb|ACI34239.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 387
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 151/307 (49%), Gaps = 47/307 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIM------LTKNKRPTGEGSTRSTAPTKAPQSSA-------PTPAATPA 108
E K+ E +FVV+M +P+G +T +++ T +A P P
Sbjct: 61 EYKIDEKNFVVVMVAKPKVAPAAAQPSGATTTTTSSTTVPTVPAAALSGSDNPPEGGKPE 120
Query: 109 TAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD 168
P E P+ T APAS SS + ++ A S LV G + E + +++
Sbjct: 121 DKP-------AEERPSNTSAPASTPTSSSGLLANVNMFEEATSALVTGQSYENMVTEMML 173
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE----QAEVQPVARAPGNGQAANSPT 224
MG ++R+ VV +LRA++NNP+RAVEYL +GIP A PV G G A +
Sbjct: 174 MG---YEREQVVASLRASFNNPDRAVEYLLTGIPAGEEGHASADPVVPPVGGGTPALNTG 230
Query: 225 QMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
M T PA S + S A GA L FL N PQF +R ++Q N
Sbjct: 231 SM---TTPASTGS-----------------LASAATGANPLGFLVNQPQFLQMRQIIQQN 270
Query: 285 PQLFPCF 291
P L P
Sbjct: 271 PSLLPAL 277
>gi|402904431|ref|XP_003915049.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Papio anubis]
gi|355703206|gb|EHH29697.1| UV excision repair protein RAD23-like protein A [Macaca mulatta]
gi|383420439|gb|AFH33433.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 363
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 149/285 (52%), Gaps = 42/285 (14%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--TPATAPQTAVPISTEP 121
++ E +FVV+M+TK K G + +PT AP+SS P A + + PQ A P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAAREDKSP 124
Query: 122 TP--APTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ APT +P S S S S+ S AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGR-EEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 -----------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|402904433|ref|XP_003915050.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Papio anubis]
Length = 308
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 149/285 (52%), Gaps = 42/285 (14%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--TPATAPQTAVPISTEP 121
++ E +FVV+M+TK K G + +PT AP+SS P A + + PQ A P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAAREDKSP 124
Query: 122 TP--APTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ APT +P S S S S+ S AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGR-EEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 -----------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|242079575|ref|XP_002444556.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
gi|241940906|gb|EES14051.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
Length = 184
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/118 (65%), Positives = 86/118 (72%), Gaps = 9/118 (7%)
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
+ ++ VY AASNLV+GNNLE IQQILDMGGGTW+RDTVVRALRAAYNNPERA++YLYS
Sbjct: 69 SGDADVYSQAASNLVSGNNLEQIIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYS 128
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA---PV----TSSGPNANPLDLFPQ 250
GIP E PVA AP GQ N Q P P QPA PV S+ P+ANPL LFPQ
Sbjct: 129 GIPVNVETPPVAGAPAGGQQTNQ--QAPSPAQPAVASPVQPSAASARPDANPLILFPQ 184
>gi|392883244|gb|AFM90454.1| UV excision repair protein RAD23-like B isoform 5 [Callorhinchus
milii]
Length = 378
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 152/317 (47%), Gaps = 64/317 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL+ SF ++++PE V +K KIET +G D +P A Q LIY GK+L D+T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT---AVPI 117
E K+ E FVV+M+TK K P+ + + A PQ ++ TP P ++P VP
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPVSSPTATTETVPT 120
Query: 118 ST--EPTPAPTPAPASASVSSVSATSE-------------SGVYGHAASNLVAGNNLEGA 162
+T E A P S +S+ ++TS S ++ A S LV G E
Sbjct: 121 NTSNELNTAEKPTEKSDEISTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTGQQYETM 180
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+ +I MG + R+ VV AL+A++NNP+RAVEYL GIP + N+
Sbjct: 181 VTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIP----------GERTRSSVNN 227
Query: 223 PTQM--------PQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQF 274
P Q QP PAP + P L+FLRN PQF
Sbjct: 228 PQQTTGTAWTGSAQPAAPAPTSRENP------------------------LEFLRNQPQF 263
Query: 275 QVLRAMVQANPQLFPCF 291
+R ++Q NP L P
Sbjct: 264 HQMRQILQQNPSLLPAL 280
>gi|164665688|gb|ABY66298.1| RAD23-like protein [Brassica napus]
Length = 357
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 148/291 (50%), Gaps = 72/291 (24%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVK LKG F+++V PED+V DVK IETV G YPAA+Q+LI++GKVLKD+TTL
Sbjct: 1 MKIFVKNLKGARFEIQVSPEDSVGDVKKNIETVMGVTAYPAAEQVLIHKGKVLKDETTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPISTE 120
N V+E S + ++ K+P G+ STAP +A AA P +TA +T V
Sbjct: 61 ANNVSEKSVIGVI---KKKPASTGT--STAPASL---TALVHAAHPYSTAAETPV----- 107
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
TP PA +AS + + SES IQQIL+M G W R+ V
Sbjct: 108 -TPT-EPAWDAASNGNYESISESN------------------IQQILEMVRGAWSREAVA 147
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
AL AY++ +A+EY+Y GIP ++E + T Q +PA
Sbjct: 148 YALCLAYDDLNKALEYIYFGIPVKSE--------------DHYTTEEQTQEPAEA----- 188
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
DL SLD LR++P+F+ LR +VQ++P L F
Sbjct: 189 -----DL--------------EWSLDSLRHTPEFEHLRPLVQSDPSLLMDF 220
>gi|149037839|gb|EDL92199.1| RAD23a homolog (S. cerevisiae) [Rattus norvegicus]
Length = 363
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 148/292 (50%), Gaps = 56/292 (19%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT AP+ S P P A PA+ + P P
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGTPAPPEASPTAAPEPSTPFPPA-PASG-------MSHPPP 116
Query: 124 APTPAPASASVSSVSATSESGVYG-----------HAASNLVAGNNLEGAIQQILDMGGG 172
+ +S+ S+ + + ES AAS LV G+ E + +I+ MG
Sbjct: 117 SNREDKSSSEESATTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG-- 174
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QP
Sbjct: 175 -YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQP 222
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
A + AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 223 A-----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|344282700|ref|XP_003413111.1| PREDICTED: UV excision repair protein RAD23 homolog A [Loxodonta
africana]
Length = 363
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 152/289 (52%), Gaps = 50/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA---PTPAAT----PATAPQTAVP 116
++ E +FVV+M+TK K G + T+PT AP+SS P PA+ P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKAGPGTSAPPETSPTAAPESSTSFPPAPASGMSHPPPTAKEDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESVPTMSPESVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT-QPAPV 235
+ VV ALRA+YNNP RAVEYL +GI PG+ + +S Q Q + QPA
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGI------------PGSPEPEHSSVQESQVSEQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ A G L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ---------------------TEAVGDNPLEFLRDQPQFQNMRQVIQQN 251
>gi|397479272|ref|XP_003810949.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Pan paniscus]
Length = 403
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 161/322 (50%), Gaps = 58/322 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + K + G+ EVK +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MSLKKKKVSGSVCRREVKA------LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 54
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 55 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 114
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 115 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 174
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 175 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 231
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 232 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 274
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 275 NQPQFQQMRQIIQQNPSLLPAL 296
>gi|351710326|gb|EHB13245.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 406
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 161/323 (49%), Gaps = 57/323 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ F ++V D V +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQIFKIDV---DLVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 57
Query: 62 ENKVAENSFVVIMLTKNKRPT----------------------------GEGSTRSTAPT 93
E K+ E +FVV+M+TK K T + APT
Sbjct: 58 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSSPASTTTVSSSSATAVAQAPTPAPALAPT 117
Query: 94 KAPQSSAPTPAAT-----PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
AP S AP PA+A Q P S +P P + +++ ++ +S S ++
Sbjct: 118 SAPASIAPAVTTVSSEPAPASAAQQEKP-SEKPAETPVASSPASTDNTSGDSSRSNLFED 176
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 177 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 233
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
V P QAA+ T PQ + A ++ A + ++G L+FL
Sbjct: 234 AVVDPP---QAAS--TGAPQSSAVAAAAATTTAA------------TTTTSSGGHPLEFL 276
Query: 269 RNSPQFQVLRAMVQANPQLFPCF 291
RN PQFQ +R ++Q NP L P
Sbjct: 277 RNQPQFQQMRQIIQQNPSLLPAL 299
>gi|432095937|gb|ELK26853.1| UV excision repair protein RAD23 like protein A [Myotis davidii]
Length = 363
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 148/288 (51%), Gaps = 48/288 (16%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA-------TPATAPQTAVP 116
++ E +FVV+M+TK K +G + T AP+SS P A TP T + P
Sbjct: 65 RIDEKNFVVVMVTKAKNSSGTSVPPEASSTAAPESSTSFPLAPASGMSHTPPTVREDRSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESVPTASPESVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GIP E P +G Q +Q + T
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSV--------QESQVSEQT 222
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
S+ P AG L+FLR+ PQFQ +R ++Q N
Sbjct: 223 STEP-------------------AGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|403302246|ref|XP_003941773.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Saimiri boliviensis boliviensis]
Length = 308
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 50/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAVQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAGEDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 REQVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|403302244|ref|XP_003941772.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Saimiri boliviensis boliviensis]
Length = 363
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 50/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAVQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAGEDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 REQVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A isoform 1 [Homo sapiens]
gi|426387413|ref|XP_004060163.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Gorilla gorilla gorilla]
gi|1709983|sp|P54725.1|RD23A_HUMAN RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=hHR23A
gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens]
gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens]
gi|15559329|gb|AAH14026.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|60813919|gb|AAX36280.1| RAD23-like A [synthetic construct]
gi|61355208|gb|AAX41114.1| RAD23-like A [synthetic construct]
gi|119604739|gb|EAW84333.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119604740|gb|EAW84334.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|325464287|gb|ADZ15914.1| RAD23 homolog A (S. cerevisiae) [synthetic construct]
gi|410227880|gb|JAA11159.1| RAD23 homolog A [Pan troglodytes]
gi|410257472|gb|JAA16703.1| RAD23 homolog A [Pan troglodytes]
gi|410297508|gb|JAA27354.1| RAD23 homolog A [Pan troglodytes]
gi|410351505|gb|JAA42356.1| RAD23 homolog A [Pan troglodytes]
Length = 363
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 50/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|164665690|gb|ABY66299.1| DNA repair protein RAD23 [Brassica napus]
Length = 327
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 139/284 (48%), Gaps = 82/284 (28%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKG F+++V ED+V DVK IETV G AA+QMLI++GKVL+D+TT+E
Sbjct: 1 MKIFVKTLKGDRFEIQVNLEDSVADVKKNIETVMG---VTAAEQMLIHKGKVLEDETTME 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
N+V+E S + +M KR T +++ + PQ A P++T
Sbjct: 58 ANEVSEKSIIAVM----KRKHASTVTSTSSASLKPQVQAAHPSST--------------- 98
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
AS + + SESG IQQIL+M GTW R+ V
Sbjct: 99 ----------ASNMTYESISESG------------------IQQILEMVSGTWSREAVAY 130
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
AL A N+ ++AVEYLY G+PEQ+E P + TQ P+ +Q
Sbjct: 131 ALYFASNDLDKAVEYLYFGLPEQSE------DPHKTEGTQEHTQEPEASQ---------- 174
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANP 285
A SLD LRN+P+F+ +R +VQ++P
Sbjct: 175 ----------------DAIQEWSLDALRNTPEFEYVRPLVQSDP 202
>gi|392996951|ref|NP_001257292.1| UV excision repair protein RAD23 homolog A isoform 3 [Homo sapiens]
gi|426387415|ref|XP_004060164.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 308
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 50/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|296233062|ref|XP_002807846.1| PREDICTED: UV excision repair protein RAD23 homolog A [Callithrix
jacchus]
Length = 363
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 50/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFLPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|38492677|pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
gi|38492966|pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 50/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 10 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 70 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 129
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 130 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 181
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 182 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 228
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 229 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 256
>gi|410950562|ref|XP_003981973.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Felis catus]
Length = 308
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 144/290 (49%), Gaps = 52/290 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE--- 120
++ E +FVV+M+TK K G +PT AP+SS P A PA+ P + E
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA-PASGMSQPSPTAREDKS 123
Query: 121 ------PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
PT +P S S S E AAS LV G+ E + +I+ MG +
Sbjct: 124 PSEESVPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|297276258|ref|XP_001110103.2| PREDICTED: UV excision repair protein RAD23 homolog A [Macaca
mulatta]
Length = 276
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 147/285 (51%), Gaps = 43/285 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--TPATAPQTAVPISTEP 121
++ E +FVV+M+TK K G + +PT AP+SS P A + + PQ A P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAAREDKSP 124
Query: 122 TP--APTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ APT +P S S S S+ S AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGR-EEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
>gi|380815238|gb|AFE79493.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
gi|384948564|gb|AFI37887.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 362
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 147/285 (51%), Gaps = 43/285 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--TPATAPQTAVPISTEP 121
++ E +FVV+M+TK K G + +PT AP+SS P A + + PQ A P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAAREDKSP 124
Query: 122 TP--APTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ APT +P S S S S+ S AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGR-EEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
>gi|61557236|ref|NP_001013208.1| UV excision repair protein RAD23 homolog A [Rattus norvegicus]
gi|54038637|gb|AAH84695.1| RAD23 homolog A (S. cerevisiae) [Rattus norvegicus]
Length = 351
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 146/292 (50%), Gaps = 57/292 (19%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT AP+ S P P A PA+ + P P
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGTPAPPEASPTAAPEPSTPFPPA-PASG-------MSHPPP 116
Query: 124 APTPAPASASVSSVSATSESGVYG-----------HAASNLVAGNNLEGAIQQILDMGGG 172
+ +S+ S+ + + ES AAS LV G+ E + +I+ MG
Sbjct: 117 SNREDKSSSEESATTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG-- 174
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QP
Sbjct: 175 -YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQP 222
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
A AG L+FLR+ PQFQ +R ++Q N
Sbjct: 223 A------------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
>gi|335282758|ref|XP_003123386.2| PREDICTED: UV excision repair protein RAD23 homolog A-like [Sus
scrofa]
Length = 363
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 148/291 (50%), Gaps = 54/291 (18%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
++ E +FVV+M+TK K G +PT AP+SS P A PA+ +S P+P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPLA-PASG------MSHPPSP 117
Query: 124 A-PTPAPASASVSSVS---------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
A +P+ SV + S ++ SG AAS LV G+ E + +I MG
Sbjct: 118 AREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEITSMG--- 174
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA 233
++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S PT+
Sbjct: 175 YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVSEQPPTE-- 225
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 226 -------------------------AAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|332222431|ref|XP_003260373.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Nomascus leucogenys]
Length = 388
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 151/297 (50%), Gaps = 52/297 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAPTKAP-----------QSSAPTPAATPATAPQTAVPIS----TEPTPA----- 124
+T+ +AP Q+ P PA P + P + P S +EP PA
Sbjct: 65 ATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPTSTPASITPASVTASSEPAPASATKQ 124
Query: 125 --PTPAPA--------SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA +A+ S+ +S S ++ A S LV G + E + +I+ MG +
Sbjct: 125 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 181
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 182 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
++ + ++G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 237 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 281
>gi|347800662|ref|NP_001231642.1| UV excision repair protein RAD23 homolog B isoform 2 [Homo sapiens]
gi|397479270|ref|XP_003810948.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pan paniscus]
gi|426362615|ref|XP_004048453.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Gorilla gorilla gorilla]
gi|221042046|dbj|BAH12700.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 152/297 (51%), Gaps = 52/297 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAP-----------TKAPQSSAPTPAATPATAPQTAVP----ISTEPTPA----- 124
+T+ +AP T Q+ P PA P + P + P S+EP PA
Sbjct: 65 ATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAKQ 124
Query: 125 --PTPAPA--------SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA +A+ S+ +S S ++ A S LV G + E + +I+ MG +
Sbjct: 125 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 181
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 182 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
++ + ++G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 237 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 281
>gi|221045766|dbj|BAH14560.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 152/297 (51%), Gaps = 52/297 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAP-----------TKAPQSSAPTPAATPATAPQTAVP----ISTEPTPA----- 124
+T+ +AP T Q+ P PA P + P + P S+EP PA
Sbjct: 65 ATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAKQ 124
Query: 125 --PTPAPA--------SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA +A+ S+ +S S ++ A S LV G + E + +I+ MG +
Sbjct: 125 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 181
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 182 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
++ + ++G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 237 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 281
>gi|355753132|gb|EHH57178.1| UV excision repair protein RAD23-like protein B, partial [Macaca
fascicularis]
Length = 387
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 151/297 (50%), Gaps = 52/297 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 4 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 63
Query: 85 GSTRSTAPTKAP-----------QSSAPTPAATPATAPQTAVP----ISTEPTPA----- 124
+T+ +AP Q+ P PA P + P + P S+EP PA
Sbjct: 64 ATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASATKQ 123
Query: 125 --PTPAPA--------SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA +A+ S+ +S S ++ A S LV G + E + +I+ MG +
Sbjct: 124 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 180
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 181 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 235
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
++ + ++G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 236 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 280
>gi|116283302|gb|AAH03846.1| Rad23a protein [Mus musculus]
Length = 349
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 147/290 (50%), Gaps = 52/290 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVS---------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S ++ SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|347658978|ref|NP_001231638.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
gi|343961243|dbj|BAK62211.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
Length = 388
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 152/297 (51%), Gaps = 52/297 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAP-----------TKAPQSSAPTPAATPATAPQTAVP----ISTEPTPA----- 124
+T+ +AP T Q+ P PA P + P + P S+EP PA
Sbjct: 65 ATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPTSTPASITPASATASSEPAPASAAKQ 124
Query: 125 --PTPAPA--------SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA +A+ S+ +S S ++ A S LV G + E + +I+ MG +
Sbjct: 125 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 181
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 182 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
++ + ++G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 237 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 281
>gi|397487606|ref|XP_003814883.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Pan paniscus]
Length = 308
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 50/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|355567554|gb|EHH23895.1| UV excision repair protein RAD23-like protein B, partial [Macaca
mulatta]
Length = 387
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 150/297 (50%), Gaps = 52/297 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 4 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 63
Query: 85 GSTRSTAPTKAP-----------QSSAPTPAATPATAPQTAVP----ISTEPTPA----- 124
+T+ +AP Q+ P PA P + P + P S+EP PA
Sbjct: 64 ATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASATKQ 123
Query: 125 ------PTPAPASASVSSVSAT----SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P P + S ++ +T S S ++ A S LV G + E + +I+ MG +
Sbjct: 124 KKAAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 180
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 181 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 235
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
++ + ++G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 236 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 280
>gi|431898018|gb|ELK06725.1| UV excision repair protein RAD23 like protein A [Pteropus alecto]
Length = 363
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 149/288 (51%), Gaps = 48/288 (16%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++ ++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMELDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS---APTPAA----TPATAPQTAVP 116
++ E +FVV+M+TK K G +PT AP+SS +P PA+ +P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFSPAPASGMSHSPPTAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESVPTTSPESVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA--- 223
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 --------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|341941880|sp|P54726.2|RD23A_MOUSE RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=mHR23A
gi|148679013|gb|EDL10960.1| RAD23a homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|219519380|gb|AAI45373.1| Rad23a protein [Mus musculus]
Length = 363
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 147/290 (50%), Gaps = 52/290 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVS---------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S ++ SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|426228904|ref|XP_004008535.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Ovis aries]
Length = 311
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 145/288 (50%), Gaps = 45/288 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA-------TPATAPQTAVP 116
++ E +FVV+M+TK K G +PT P+SS P+A P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSAPASGMSHPPPTAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AA + V G+ E + +I+ MG ++R
Sbjct: 125 -SEESAPTTSPESVSGSVPSSGSSGREEDVAFAAPSTVTGSEYETMLTEIMSMG---YER 180
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GIP E P +G S QP+
Sbjct: 181 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPS--- 226
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 227 --------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 254
>gi|397487604|ref|XP_003814882.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Pan paniscus]
Length = 363
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 50/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|74224982|dbj|BAE38204.1| unnamed protein product [Mus musculus]
Length = 322
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 147/290 (50%), Gaps = 52/290 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVS---------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S ++ SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|56789929|gb|AAH88364.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
Length = 362
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 147/288 (51%), Gaps = 49/288 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT--PATAPQTAVP 116
++ E +FVV+M+TK K G + +PT AP+SS APT + P A + P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E PA +P S SV S ++ AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESAPATSPESVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA--- 223
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ---------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
>gi|348565217|ref|XP_003468400.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Cavia
porcellus]
Length = 362
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 145/289 (50%), Gaps = 51/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P + Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--------TPATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+ SAP +PAT +
Sbjct: 65 RIDEKNFVVVMVTKGKAGQGTLAPPEISPTAAPEPSAPFQLTSAPGMSHPSPATRDDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG +D
Sbjct: 125 SEESAPTASPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YD 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GI PG+ + + Q Q ++ P
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGI------------PGSPEPEHGSIQESQASE-QPA 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
T +G N L+FLR+ PQFQ +R ++Q N
Sbjct: 224 TEAGENP----------------------LEFLRDQPQFQSMRQVIQQN 250
>gi|417410223|gb|JAA51588.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 380
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 149/285 (52%), Gaps = 42/285 (14%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP-ISTEPT 122
++ E +FVV+M+TK K G + T AP+SS +P+A PA+ P I + +
Sbjct: 82 RIDEKNFVVVMVTKAKNSPGTSVPPEASSTAAPESSTTSPSA-PASGMSHPPPTIREDKS 140
Query: 123 PAPTPAPASA---SVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P+ P ++ SV ++ SG AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 141 PSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERV 197
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 198 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 240
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 241 -----------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 268
>gi|51230604|ref|NP_001003739.1| UV excision repair protein RAD23 homolog A [Danio rerio]
gi|50925991|gb|AAH79526.1| RAD23 homolog A (S. cerevisiae) [Danio rerio]
gi|182889188|gb|AAI64761.1| Rad23a protein [Danio rerio]
Length = 362
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 147/299 (49%), Gaps = 54/299 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +++ E TV +K KIE +G D +P A Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGRDSFPVAGQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTK--------APQSSAPTPAATPATAPQT 113
E K+ E +FVV+M++K K P S AP++ + SS+ P P
Sbjct: 61 EYKIDEKNFVVVMVSKTKSP-----GTSAAPSEPSRSMAASSSSSSSSPPPPPPPAPAPA 115
Query: 114 AVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
A+P + E PA S + S T G A+S LV G + + I+ MG
Sbjct: 116 AIPFTDECPRDDPPATVSPASSPDGGTDVVGEGEDASSTLVTGQEYDAMLTNIMSMG--- 172
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAAN-SPTQMPQPTQP 232
++RD VV AL+A+YNNP RAVEYL +GIP PV Q N +P Q+P TQP
Sbjct: 173 YERDKVVAALKASYNNPHRAVEYLLNGIP----TVPV-------QETNPAPAQLPTDTQP 221
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
G L+FLR+ PQFQ +R ++Q NP L P
Sbjct: 222 --------------------------TEGENPLEFLRSQPQFQSMRQVIQQNPSLLPAL 254
>gi|129277537|ref|NP_001076083.1| UV excision repair protein RAD23 homolog A [Bos taurus]
gi|182676545|sp|A3KMV2.1|RD23A_BOVIN RecName: Full=UV excision repair protein RAD23 homolog A
gi|126717366|gb|AAI33283.1| RAD23A protein [Bos taurus]
gi|296485920|tpg|DAA28035.1| TPA: UV excision repair protein RAD23 homolog A [Bos taurus]
Length = 362
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 143/288 (49%), Gaps = 49/288 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA-------TPATAPQTAVP 116
++ E +FVV+M+TK K G +PT P+SS P+A P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSAPASGMSHPPPTAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S + AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESAPTTSPESVSGSVPSSGSGGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GIP E P +G S QP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQP---- 222
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
S AG L+FLR+ PQFQ +R ++Q N
Sbjct: 223 --------------------STEAGENPLEFLRDQPQFQNMRQVIQQN 250
>gi|345777678|ref|XP_003431632.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Canis lupus familiaris]
Length = 385
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 144/297 (48%), Gaps = 55/297 (18%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAP 64
Query: 85 GSTRST-------------------------APTKAPQSSAPTPAATPATAPQTAVPIST 119
+T+ + APT +P S P PA + AP T+V
Sbjct: 65 ATTQQSNPATTTTVSSSTAPTVVQAPAPPVLAPTPSPASVTPAPATSSEPAP-TSVTQQE 123
Query: 120 EPTPAPTPAPASASVSSVSAT----SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+P P P + S ++ +T S S ++ A S LV G + E + +I+ MG ++
Sbjct: 124 KPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YE 180
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ V+ ALRA++NNP+RAVEYL GIP E Q V P P
Sbjct: 181 REQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDTP-------------------PA 221
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGS-LDFLRNSPQFQVLRAMVQANPQLFPCF 291
S+G + + + A+ G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 222 VSTGAPPSSVAAAAATTTASTTTASPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 278
>gi|387017982|gb|AFJ51109.1| UV excision repair protein RAD23 homolog B-like [Crotalus
adamanteus]
Length = 409
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/321 (34%), Positives = 159/321 (49%), Gaps = 49/321 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ +TV +K KIE +G D +P A Q LIY GK+L DDT L
Sbjct: 1 MQITLKTLQQQTFKIDIDCGETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALN 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAP-----QTAV 115
E K+ E +FVV+M+TK K +T + ++ TPAA P P Q +V
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPSPTTAQQSNDTTTTVTSTTPAAVPKLVPTPVPAQVSV 120
Query: 116 -----------------PIS--TEPTPAPTPA---PA---SASVSSVSATSESGVYGHAA 150
P+S E PA P PA +++ SS+ S S ++ A
Sbjct: 121 SAPTASTPAAAAACESAPVSATVEEKPADKPVETPPATSPTSTESSIGDISRSNLFEDAT 180
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q +
Sbjct: 181 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQGM 237
Query: 211 ARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRN 270
A P A SP+ A T++ + + G L+FLRN
Sbjct: 238 ADPPQAASTAASPSSAVAAAAAATTTTTT---------------TTTSSTGGHPLEFLRN 282
Query: 271 SPQFQVLRAMVQANPQLFPCF 291
PQFQ +R ++Q NP L P
Sbjct: 283 QPQFQQMRQIIQQNPSLLPAL 303
>gi|62089006|dbj|BAD92950.1| UV excision repair protein RAD23 homolog A variant [Homo sapiens]
Length = 379
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 143/289 (49%), Gaps = 51/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 82 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 141
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 142 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 193
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 194 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 240
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 241 ----------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 267
>gi|392996949|ref|NP_001257291.1| UV excision repair protein RAD23 homolog A isoform 2 [Homo sapiens]
gi|208965418|dbj|BAG72723.1| RAD23 homolog A [synthetic construct]
Length = 362
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 143/289 (49%), Gaps = 51/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ----------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
>gi|158260839|dbj|BAF82597.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 143/289 (49%), Gaps = 51/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGRGED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ----------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
>gi|242023622|ref|XP_002432231.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
gi|212517628|gb|EEB19493.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
Length = 344
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 144/289 (49%), Gaps = 59/289 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +++ TV +K KIE +G D YPA Q LIY GK+L D+T L
Sbjct: 1 MIITLKNLQQQTFTIDIDVNVTVKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRP--TGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E K+ E F+V+M+TK K P T GS+ ST PTP QT+ S
Sbjct: 60 EYKIDEKKFIVVMVTKPKLPPATHAGSSDST----------PTPGTGDGGEKQTSDTTSN 109
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
EP PAS +V+S ++ +G A S L+ G+ +++ I+DMG + ++ V
Sbjct: 110 EP-------PASENVNSGAS------FGQAESALLMGDEYNQSLRNIMDMG---YPKEQV 153
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
RALRA++NNP+RAVEYL +GIP + T+ + V
Sbjct: 154 ERALRASFNNPDRAVEYLLNGIPSDVD----------------------DTESSDVGGEE 191
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
NPL PD L FLR+ PQFQ +R ++QANPQL
Sbjct: 192 NTLNPL------TPDTCGNEEDP--LAFLRSQPQFQQMRQVIQANPQLL 232
>gi|351711552|gb|EHB14471.1| UV excision repair protein RAD23-like protein A [Heterocephalus
glaber]
Length = 363
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 144/300 (48%), Gaps = 72/300 (24%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPT- 122
++ E +FVV+M+TK KA QS+ P +P AP+ + P P
Sbjct: 65 RIDEKNFVVVMVTK---------------AKAGQSTLAPPEVSPTAAPEPSTPFQLSPAS 109
Query: 123 -----PAPTPAPASASVSSVSATSESGVYG------------HAASNLVAGNNLEGAIQQ 165
P T S S S + TS V G AAS LV G+ E + +
Sbjct: 110 GMSHPPPATREDKSPSQESATTTSPESVLGSVPSSGSSGREEDAASTLVTGSEYETMLME 169
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
I+ MG ++R+ V+ ALRA+YNNP RAVEYL +GI PGN + + Q
Sbjct: 170 IMSMG---YERERVIAALRASYNNPHRAVEYLLTGI------------PGNPEPEHGSIQ 214
Query: 226 MPQPT-QPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
Q + QPA + AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 215 ESQVSEQPA-----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|426228902|ref|XP_004008534.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Ovis aries]
Length = 365
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 143/288 (49%), Gaps = 46/288 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA-------TPATAPQTAVP 116
++ E +FVV+M+TK K G +PT P+SS P+A P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSAPASGMSHPPPTAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AA + V G+ E + +I+ MG ++R
Sbjct: 125 -SEESAPTTSPESVSGSVPSSGSSGREEDVAFAAPSTVTGSEYETMLTEIMSMG---YER 180
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GIP E P +G S QP
Sbjct: 181 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQP---- 225
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
S AG L+FLR+ PQFQ +R ++Q N
Sbjct: 226 --------------------STEAGENPLEFLRDQPQFQNMRQVIQQN 253
>gi|73986456|ref|XP_542038.2| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Canis lupus familiaris]
Length = 362
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 148/288 (51%), Gaps = 49/288 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA---PTPAAT----PATAPQTAVP 116
++ E +FVV+M+TK K G +PT AP+SS P PA+ P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPAPASGMSHPPPTAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESVPTTSPESVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GI PG+ + + Q Q ++ P T
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGI------------PGSPEPEHGSVQESQVSE-QPAT 224
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
G N L+FLR+ PQFQ +R ++Q N
Sbjct: 225 EGGENP----------------------LEFLRDQPQFQNMRQVIQQN 250
>gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus]
Length = 296
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 145/290 (50%), Gaps = 53/290 (18%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVS---------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S ++ SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 -----------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
>gi|148679012|gb|EDL10959.1| RAD23a homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 379
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 145/290 (50%), Gaps = 53/290 (18%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 81
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 82 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 135
Query: 124 APTPAPASASVSSVS---------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S ++ SG AAS LV G+ E + +I+ MG +
Sbjct: 136 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 192
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 193 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 240
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 241 -----------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 267
>gi|34447211|ref|NP_033036.2| UV excision repair protein RAD23 homolog A [Mus musculus]
gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus]
gi|187952977|gb|AAI38685.1| Rad23a protein [Mus musculus]
Length = 362
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 145/290 (50%), Gaps = 53/290 (18%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVS---------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S ++ SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 -----------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
>gi|410950560|ref|XP_003981972.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Felis catus]
Length = 362
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 144/290 (49%), Gaps = 53/290 (18%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE--- 120
++ E +FVV+M+TK K G +PT AP+SS P A PA+ P + E
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA-PASGMSQPSPTAREDKS 123
Query: 121 ------PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
PT +P S S S E AAS LV G+ E + +I+ MG +
Sbjct: 124 PSEESVPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GI PG+ + + Q Q ++ P
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGI------------PGSPEPEHGSVQESQVSE-QP 222
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
T G N L+FLR+ PQFQ +R ++Q N
Sbjct: 223 ATEGGENP----------------------LEFLRDQPQFQNMRQVIQQN 250
>gi|126323174|ref|XP_001366912.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Monodelphis domestica]
Length = 366
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 142/308 (46%), Gaps = 71/308 (23%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
+ +KTL+ +F + ++P +TV +K KIE +G D +P + Q LIY GK+L DD + +
Sbjct: 5 VTLKTLQQQTFKIRMEPGETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
K+ E +FVV+M+TK K A + P+ SAP A T + T + P
Sbjct: 65 KIDEKNFVVVMVTKAK--------AGPATSVPPEPSAPASANTLEPSTPTPPAPTIVAMP 116
Query: 124 APTPAPASASVSSVSATSESGV-------------------YGHAASNLVAGNNLEGAIQ 164
P PAP AT ES AAS LV G+ E +
Sbjct: 117 LPPPAPNEEK----KATEESAAGTLPEARPGSLPSSGSSGQEDDAASTLVTGSEYETMLT 172
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
+I+ MG ++R+ VV ALRA+YNNP RAVEYL GI PG+ + + P
Sbjct: 173 EIMSMG---YERERVVAALRASYNNPHRAVEYLLMGI------------PGSPEPESGPV 217
Query: 225 QMPQ-PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQA 283
Q Q P QPAP G L+FLR+ PQFQ +R ++Q
Sbjct: 218 QESQAPEQPAP------------------------EGGENPLEFLRDQPQFQNMRQVIQQ 253
Query: 284 NPQLFPCF 291
NP L P
Sbjct: 254 NPSLLPAL 261
>gi|387914414|gb|AFK10816.1| UV excision repair protein RAD23-like protein [Callorhinchus milii]
Length = 378
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 144/315 (45%), Gaps = 60/315 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL+ SF ++++PE V +K KIET +G D +P A Q LIY GK+L D+T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKA------------PQSSAPTPAATPAT 109
E K+ E FVV+M+TK P S ++ A A A +P AT T
Sbjct: 61 EYKIDEEKFVVVMITK---PKSSPSVQAAATQPATPSTPQPATTTPTVPPASSPTATTET 117
Query: 110 APQTAVPISTEPTPAPTPAPAS-------------ASVSSVSATSESGVYGHAASNLVAG 156
P S E A P S +++ + S ++ A S LV G
Sbjct: 118 VPTNT---SNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTG 174
Query: 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN 216
E + +I MG + R+ VV AL+A++NNP+RAVEYL GIP
Sbjct: 175 QQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIP-------------- 217
Query: 217 GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQV 276
G+ A S PQ T T S A P + + L+FLRN PQF
Sbjct: 218 GERARSSVNNPQQTTGTACTGSAQPAAP------------APTSRENPLEFLRNQPQFHQ 265
Query: 277 LRAMVQANPQLFPCF 291
+R ++Q NP L P
Sbjct: 266 MRQILQQNPSLLPAL 280
>gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus]
gi|1587277|prf||2206377A MHR23A gene
Length = 363
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 145/295 (49%), Gaps = 62/295 (21%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGISAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVS---------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S ++ SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGI-----PEQAEVQPVARAPGNGQAANSPTQMPQP 229
+R+ VV ALRA+YNNP RAVEYL +GI PE VQ RA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQRA---------------- 219
Query: 230 TQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
QPA + AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 220 EQPA-----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>gi|414885366|tpg|DAA61380.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 221
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 84/127 (66%), Gaps = 25/127 (19%)
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV-------QPVARAPGNGQAAN 221
MGGGTWDRDTV+RALRAAYNNPERAVEYLYSGIPEQ EV QPV
Sbjct: 1 MGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVPAPPPSSQPV----------- 49
Query: 222 SPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMV 281
P Q QP Q +GPNANPLDLFPQ LP+ S A G+LD LRN+ QFQ L +V
Sbjct: 50 DPVQAVQPAQ------AGPNANPLDLFPQSLPN-DSANANTGNLDVLRNNSQFQNLLGLV 102
Query: 282 QANPQLF 288
QANPQ+
Sbjct: 103 QANPQIL 109
>gi|410903534|ref|XP_003965248.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Takifugu rubripes]
Length = 384
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 153/311 (49%), Gaps = 58/311 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F +E+ E+TV +K +IE +G D +P + LIY G +L D L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKTLKERIEAEKGKDNFPVSGLKLIYAGVILNDVKPLK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAAT-PATAP--------- 111
E +++ +FVV+M TK P AP ++ P+PAA+ P TA
Sbjct: 61 EYNISDKNFVVVMATK--------------PKTAPAATQPSPAASGPCTAAPPAPGACST 106
Query: 112 -------QTAVPISTEPTPAPTPAPASASVSSVSAT-SESGVYGHAASNLVAGNNLEGAI 163
QT + E P T APAS S + + + A SNLV G + E +
Sbjct: 107 VSEVPTQQTTKEDNAEEKPPSTAAPASTPEGGGSEVPTNANLIDEAVSNLVTGPSYESMV 166
Query: 164 QQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSP 223
+I+ MG +DR+ VV ALRA++NNP+RAVEYL +GIP + + GQAA +
Sbjct: 167 NEIMLMG---YDREQVVVALRASFNNPDRAVEYLLTGIPGRDQ----------GQAAGT- 212
Query: 224 TQMPQPTQPAPVTSSGPN-ANPLDLF--PQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAM 280
A TS+G A PL P G +GA L FLRN PQFQ +R +
Sbjct: 213 --------TAEATSAGVAPAAPLGGLRAPTGT-GSSTGAERVNPLSFLRNQPQFQQMRQL 263
Query: 281 VQANPQLFPCF 291
+Q N L P
Sbjct: 264 IQQNASLLPAL 274
>gi|395850797|ref|XP_003797962.1| PREDICTED: UV excision repair protein RAD23 homolog A [Otolemur
garnettii]
Length = 362
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 149/288 (51%), Gaps = 49/288 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA---PTPAAT----PATAPQTAVP 116
++ E +FVV+M+TK K G + +PT A ++S P PA+ P A + P
Sbjct: 65 RIDEKNFVVVMVTKAKAGQGTSAPLEASPTAASETSTTFLPAPASGMSHPPPAAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESVPTTSPESVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GI PG+ + +S Q Q ++ P T
Sbjct: 178 EQVVAALRASYNNPHRAVEYLLTGI------------PGSPEPEHSSVQESQVSE-QPAT 224
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+G N L+FLR+ PQFQ +R ++Q N
Sbjct: 225 EAGENP----------------------LEFLRDQPQFQNMRQVIQQN 250
>gi|449266094|gb|EMC77210.1| UV excision repair protein RAD23 like protein B, partial [Columba
livia]
Length = 378
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 137/291 (47%), Gaps = 51/291 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K G
Sbjct: 4 LKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAAAGATQ 63
Query: 87 TRSTAPTKAPQSSAPTPA--------------------------ATPATAPQTAVPISTE 120
+ ++A + P TAP+ P
Sbjct: 64 QSDATSAVSSTTAAAVTVTAPVPTAAPVPDPVPPPPAPDEVACESAPVTAPEEEKPAEKT 123
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P P +P+S S+ TS S ++ A S LV G + E + +I+ MG ++R+ V+
Sbjct: 124 PEPPAAISPSSTE-STTGDTSRSNLFEDAISALVTGQSYENMVTEIISMG---YEREQVI 179
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRA++NNP+RAVEYL GI PG+ QA P+Q + S
Sbjct: 180 AALRASFNNPDRAVEYLLMGI------------PGDNQAVAEPSQAA----STGASQSST 223
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
A + P + + + G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 224 VATSVATIP-----MTTSSLGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 269
>gi|327278100|ref|XP_003223800.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Anolis
carolinensis]
Length = 425
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 151/324 (46%), Gaps = 51/324 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVGGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIM-------------------------------LTKNKRPTGEGSTRST 90
E K+ E +FVV+M + + +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPAPSPTTTQQSNDTTTTVSSSTIAAAAPKPAPVTAPAP 120
Query: 91 APTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSAT---SESGVYG 147
A P + PTPAA + P+ + P PA+ S S+ S T S S ++
Sbjct: 121 ALVSTPVADPPTPAAVTCEPAPVSSPVEEKVAEKPIETPAATSTSTDSTTGDLSRSNLFE 180
Query: 148 HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV 207
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 237
Query: 208 QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDF 267
Q + P QAA++ A + + + G L+F
Sbjct: 238 QGMTDPP---QAASTGASPSAVAAAAAAAVTTTTTT-----------TTTSSTGGHPLEF 283
Query: 268 LRNSPQFQVLRAMVQANPQLFPCF 291
LRN PQFQ +R ++Q NP L P
Sbjct: 284 LRNQPQFQQMRQIIQQNPSLLPAL 307
>gi|297685061|ref|XP_002820118.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pongo abelii]
Length = 388
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 147/297 (49%), Gaps = 52/297 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAPTKAP-----------QSSAPTPAATPATAPQTAVPISTE------------- 120
+T+ +AP Q+ P PA P + P + P S
Sbjct: 65 ATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPASASAAKQ 124
Query: 121 ----PTPAPTPAPAS--ASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
PA TP S A+ S+ +S S ++ A S LV G + E + +I+ MG +
Sbjct: 125 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 181
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 182 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
++ + ++G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 237 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 281
>gi|345482492|ref|XP_001608155.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Nasonia vitripennis]
Length = 358
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 151/309 (48%), Gaps = 59/309 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L +F VE+ TV D+K KIE +G +P+ Q LIY GK+L D+ L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 62 ENKVAENSFVVIMLT--KNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP-QTAVPIS 118
E + E FVV+M++ KN+ T + + T TK+ + +APT +TPA AP QT+VP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAPT--STPAPAPVQTSVPAQ 115
Query: 119 -TEP----TPAPTPAPASASVSS-VSATSESGVYGHAASN-----LVAGNNLEGAIQQIL 167
TE P+ P P +A + +AT + A SN L+ G + I+
Sbjct: 116 VTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESALLMGEEYNAMVNNIM 175
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
DMG ++RD V +ALRA++NNP+RAVEYL +GIP Q P A
Sbjct: 176 DMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLFEDPPEEA-------------- 218
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
+ +A P D AG L FLR PQFQ +R ++Q NPQL
Sbjct: 219 ---------AESQDALPAD-------------AGQDPLAFLRTQPQFQQMRQVIQQNPQL 256
Query: 288 F-PCFKSWG 295
P + G
Sbjct: 257 LNPVLQQIG 265
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/78 (82%), Positives = 72/78 (92%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IETVQ DVYPAAQQMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQSPDVYPAAQQMLIHQGKVLKDETTME 60
Query: 62 ENKVAENSFVVIMLTKNK 79
ENKVAENSF+VIML+K+K
Sbjct: 61 ENKVAENSFIVIMLSKSK 78
>gi|345482494|ref|XP_003424607.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Nasonia vitripennis]
Length = 367
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 151/309 (48%), Gaps = 59/309 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L +F VE+ TV D+K KIE +G +P+ Q LIY GK+L D+ L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 62 ENKVAENSFVVIMLT--KNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP-QTAVPIS 118
E + E FVV+M++ KN+ T + + T TK+ + +APT +TPA AP QT+VP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAPT--STPAPAPVQTSVPAQ 115
Query: 119 -TEP----TPAPTPAPASASVSS-VSATSESGVYGHAASN-----LVAGNNLEGAIQQIL 167
TE P+ P P +A + +AT + A SN L+ G + I+
Sbjct: 116 VTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESALLMGEEYNAMVNNIM 175
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
DMG ++RD V +ALRA++NNP+RAVEYL +GIP Q P A
Sbjct: 176 DMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLFEDPPEEA-------------- 218
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
+ +A P D AG L FLR PQFQ +R ++Q NPQL
Sbjct: 219 ---------AESQDALPAD-------------AGQDPLAFLRTQPQFQQMRQVIQQNPQL 256
Query: 288 F-PCFKSWG 295
P + G
Sbjct: 257 LNPVLQQIG 265
>gi|83415124|ref|NP_001032776.1| uncharacterized protein LOC562839 [Danio rerio]
gi|79154071|gb|AAI08001.1| Zgc:123349 [Danio rerio]
Length = 404
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 164/332 (49%), Gaps = 60/332 (18%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I +KTL+ +F V++ E TV +K KIE +G D +PA Q LIY GK+L DD L
Sbjct: 1 MLTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPL 60
Query: 61 EENKVAENSFVVIMLTKNKR----------PTGEGSTRSTAPTKAPQSSAPTPAATPATA 110
+E K+ E +FVV+M+TK K P E T AP +++ P TP A
Sbjct: 61 KEYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQPTTPVAPPNASIVPETTPDPA 120
Query: 111 P----QTAVPI----------------STEPTPAPTPAPA-----------SASVSSVSA 139
P + PI +TEP A TPAPA + + S S
Sbjct: 121 PVEPAASVEPIDPPVTAPPAASEDTVETTEPVSA-TPAPAVEEEIQGQEEQAIAQSEASL 179
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
T E + AAS LV G E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL +
Sbjct: 180 TDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLT 236
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIP ++E P Q PT + PT PAP + P A + G
Sbjct: 237 GIPAESEQPP--------QEVVRPTPVSNPTPPAPQRAQPPPAA-------AGAESGGAQ 281
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
A A L+FLR+ PQFQ +R ++Q NP L P
Sbjct: 282 ASANPLEFLRHQPQFQQMRQIIQQNPSLLPAL 313
>gi|345482490|ref|XP_003424606.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Nasonia vitripennis]
Length = 377
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 151/309 (48%), Gaps = 59/309 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L +F VE+ TV D+K KIE +G +P+ Q LIY GK+L D+ L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 62 ENKVAENSFVVIMLT--KNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP-QTAVPIS 118
E + E FVV+M++ KN+ T + + T TK+ + +APT +TPA AP QT+VP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAPT--STPAPAPVQTSVPAQ 115
Query: 119 -TEP----TPAPTPAPASASVSS-VSATSESGVYGHAASN-----LVAGNNLEGAIQQIL 167
TE P+ P P +A + +AT + A SN L+ G + I+
Sbjct: 116 VTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESALLMGEEYNAMVNNIM 175
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
DMG ++RD V +ALRA++NNP+RAVEYL +GIP Q P A
Sbjct: 176 DMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLFEDPPEEA-------------- 218
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
+ +A P D AG L FLR PQFQ +R ++Q NPQL
Sbjct: 219 ---------AESQDALPAD-------------AGQDPLAFLRTQPQFQQMRQVIQQNPQL 256
Query: 288 F-PCFKSWG 295
P + G
Sbjct: 257 LNPVLQQIG 265
>gi|383860341|ref|XP_003705649.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Megachile rotundata]
Length = 365
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 137/295 (46%), Gaps = 66/295 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAEHQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRS--------TAPTKAPQSSAPTPAATPATAPQT 113
E + E F+V+M+TK K TG G T + T + SS P P++ P+
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTAAEEDHTNTETKEESSTTSSVPEPSSNPSVQG-A 114
Query: 114 AVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
+ P+ST A S ++T+ G A S L+ G N + I+DMG
Sbjct: 115 SNPVST------------AQEQSAASTATECAGGQAESALLMGENYNTMVNNIMDMG--- 159
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA 233
++R+ V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 160 YEREQVEQALRASFNNPDRAVEYLVTGIP----AQLFEDLPEDQLEAQEQFQ-------- 207
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
G L FLR PQFQ +R ++Q NPQL
Sbjct: 208 -------------------------DHGQHPLAFLRMQPQFQQMREVIQQNPQLL 237
>gi|428161911|gb|EKX31145.1| Rad23 nucleotide excision repair protein binds to XPC [Guillardia
theta CCMP2712]
Length = 378
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 156/308 (50%), Gaps = 43/308 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKT+ G ++E +P +T+ D+K KIE S P + +I+ G+VL+D +
Sbjct: 1 MKVIVKTMAGLQTEMEFEPTNTLADLKTKIEGQMSSLGGPVNK--IIHMGRVLEDGKPIS 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQ-SSAPTPAATP-------ATAPQT 113
E VA+ + VIM++K K P + PQ SS P P+A P P
Sbjct: 59 EYGVADGNTFVIMVSKKK------------PAQEPQPSSEPAPSAAPKPSTPATEAPPAA 106
Query: 114 AVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
++P P TPA ++ S + S TS Y +AS L+ G +LE + QI++MG
Sbjct: 107 PAVQPSQPAPPSTPAQSAPSTAPASTTS----YDASASALLTGESLEATVMQIMEMG--- 159
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ---PT 230
++R+ V++ALRAA+NNP+RAVEYL +GIPE A+ + G G +
Sbjct: 160 FEREQVMKALRAAFNNPDRAVEYLMTGIPEGADTAAPPQGGGQGGGQGAGGSGSGGGVSI 219
Query: 231 QPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-P 289
P ++S L Q SG G G LDFLR+ PQF +LR ++QA PQ P
Sbjct: 220 DPEVLSS---------LQSQMQQHSESGGTG-GPLDFLRSDPQFAMLRGIIQARPQFLQP 269
Query: 290 CFKSWGNK 297
+ G +
Sbjct: 270 LLEQIGQQ 277
>gi|452824592|gb|EME31594.1| nucleotide excision repair protein [Galdieria sulphuraria]
Length = 432
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 161/308 (52%), Gaps = 38/308 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT-TL 60
MK+ KTL+G FD+E +DTV +VK K+ VQG + A LI+ GKVL ++ L
Sbjct: 1 MKLRFKTLQGKEFDLETSLDDTVAEVKRKVAAVQGFE-QDALSCRLIFSGKVLSNENEKL 59
Query: 61 EENKVAENSFVVIMLTKN--KRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQ----TA 114
++ V E+SF+V+M K ++ G+ S+++ A K +++ + + + TA
Sbjct: 60 QDLNVKEDSFLVVMPPKKTYQKTMGQSSSKTDAQGKEAETTRQKETTSESVQEKQSSTTA 119
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
V I+ A++S S TS S+ V G+ E ++ +++MG +
Sbjct: 120 VTINNNDRD---ETKATSSSQPTSGTS---------SDFVIGSQYETTVKNLMEMG---F 164
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ------PVARAPGNGQAANSPTQMPQ 228
+ V RALRAA++NP+RAVEYL++GIPE E + P +P G + TQ
Sbjct: 165 EEQQVKRALRAAFHNPDRAVEYLFNGIPENLERELGQTSLPERTSPQVGHTDRTATQ-EN 223
Query: 229 PTQPAPVTSSGPNA---NPLDLFP----QGLPDVGSGAAGA-GSLDFLRNSPQFQVLRAM 280
T + V+S G A P ++F Q G+ + G+ GSLDFL PQF V+R +
Sbjct: 224 RTGSSGVSSIGNQATDSQPFNMFEPQRSQTAQQGGTESTGSTGSLDFLTRIPQFNVMRRL 283
Query: 281 VQANPQLF 288
+QANP++
Sbjct: 284 IQANPRIL 291
>gi|395516067|ref|XP_003762216.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sarcophilus
harrisii]
Length = 482
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 144/303 (47%), Gaps = 61/303 (20%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 97 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK----AAA 152
Query: 87 TRSTAPTKAPQSS-----------------APTPA----------------ATPATAPQ- 112
T + +P QS+ APTP+ A A P
Sbjct: 153 TSTPSPATTQQSNPATTTTVSSSSAASVAQAPTPSPALAPTPTPTSVTPTPAAAACEPIP 212
Query: 113 TAVPISTEPTPAPTPAPA----SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD 168
T+ P +P P AP ++S S++ +S S ++ A S LV G + E + +I+
Sbjct: 213 TSTPKEEKPAEKPVEAPVGISPTSSDSTLGDSSRSNLFEDATSALVTGQSYENMVTEIMS 272
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V
Sbjct: 273 MG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVV----------------D 313
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
P Q A ++ +A + +G L+FLRN PQFQ +R ++Q NP L
Sbjct: 314 PPQAASTGAAQSSAVAAAAATTTATTTTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLL 373
Query: 289 PCF 291
P
Sbjct: 374 PAL 376
>gi|213402873|ref|XP_002172209.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
gi|212000256|gb|EEB05916.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
Length = 373
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 149/294 (50%), Gaps = 27/294 (9%)
Query: 2 MKIFVKTLKGTSFDV-EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M++ K L+ F V +V P+ TV +VK KI+ QG Y +Q LIY G++L DD T+
Sbjct: 1 MQLTFKNLQQQKFVVPDVDPKTTVLEVKQKIKEQQG---YEVERQKLIYSGRILADDKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
EE + E F+V M+++ P + T K ++ TP T +T+P+T
Sbjct: 58 EEYDIKEKDFIVCMVSR--APASKVKTEQKTEEKKQSTTESTPLNTTSTSPKT------- 108
Query: 121 PTPAPTPAPA-SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PAP P + + +A + + + G S+LV G I +++MG ++R V
Sbjct: 109 --PAPESVPEQTQPAAVAAAPTAAPIVGD--SSLVLGAQRNAVIDNMVEMG---YERSQV 161
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT-QPAPVTSS 238
A+RAA+NNP+RAVEYL +GIPE AA + T + AP S+
Sbjct: 162 ELAMRAAFNNPDRAVEYLLNGIPESVRQAQEQEQAAAAAAATAATNATAASGNAAPANST 221
Query: 239 GPNANPLDLFPQGLP----DVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
P A P +LF Q + SGA+G L FLR PQFQ LR +VQ NPQ+
Sbjct: 222 QP-AAPGNLFEQAAAHAQGEEESGASGEDPLGFLRELPQFQQLRQIVQQNPQML 274
>gi|414589472|tpg|DAA40043.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 225
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 85/139 (61%), Gaps = 26/139 (18%)
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP- 227
MGGG WDRDTV+RALR AYNNPERAVEYLYSGIPEQ +V PT P
Sbjct: 1 MGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDV---------------PTSPPS 45
Query: 228 -QPTQPAPVTS-------SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRA 279
QP P SGPNANPLDLFPQ LP+ S AG G+LD LRN+ QFQ L
Sbjct: 46 IQPVNPVQAAQAAQTAAPSGPNANPLDLFPQSLPN-ASANAGTGNLDVLRNNVQFQNLLG 104
Query: 280 MVQANPQLF-PCFKSWGNK 297
+VQANPQ+ P + G +
Sbjct: 105 LVQANPQILQPLLQELGKQ 123
>gi|241713573|ref|XP_002412111.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
gi|215505188|gb|EEC14682.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
Length = 392
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 149/306 (48%), Gaps = 42/306 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ SF VE+ P DTV K KIE +G + YPA Q LIY GK+L DD+ +
Sbjct: 1 MIVTLKTLQQQSFKVEIDPSDTVKVFKEKIEVEKGKE-YPAQYQKLIYAGKILNDDSKMS 59
Query: 62 ENKVAENSFVVIMLTKNKRPT---GEGSTR--STAPTKAP--------------QSSAPT 102
E + E FVVIM+TK K T GEG+ AP P + P
Sbjct: 60 EYDIEEKKFVVIMVTKPKCGTPSSGEGAASPVVAAPVDVPGTPAPAGAASGNAGATKGPE 119
Query: 103 PAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGA 162
A +P TA P S A+A+ + + S G+ A S LV G + +
Sbjct: 120 AAGETTRSPTTAQPPSVPAQQTTPAPAAAAAAPTATTESSGGI-ALAESALVMGEDYQRM 178
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+ QI++MG +D+ V RALRA++NNP+RAVEYL +G E + P Q+
Sbjct: 179 VSQIMEMG---YDKPQVERALRASFNNPDRAVEYLLTGGNEGGNTEGGGAPPAAAQS--- 232
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
P ++ P A PL +GL GSG A L FLR PQFQ +R ++Q
Sbjct: 233 ---------PGREAAAPPGALPLST--EGL---GSGGA-EDPLAFLRFQPQFQQMRQVIQ 277
Query: 283 ANPQLF 288
NPQL
Sbjct: 278 QNPQLL 283
>gi|291223551|ref|XP_002731773.1| PREDICTED: protein RAD23 repair 23 (2L942)-like [Saccoglossus
kowalevskii]
Length = 601
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 145/296 (48%), Gaps = 12/296 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F VE++P TV D+K K+E V+G D +PAA Q LIY G++L DD +
Sbjct: 1 MLITLKTLQQQTFKVEIEPTKTVKDLKAKVEEVRGKDGFPAAGQKLIYAGRILADDKLIS 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ ++E +FVV+M+TK K ST + P AP A P + P
Sbjct: 61 DYNMSEENFVVVMVTKPKAAPKTESTVESKPATAPSQPAEKPKEEKKEETKEEKIDDKPP 120
Query: 122 TP-APTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T A +A ++ ++TS + A S L+ G E + ++++MG ++RD VV
Sbjct: 121 TESASASTETAAGTTTTASTSLASTLSAAESTLLTGAAYENVVAELMNMG---YERDPVV 177
Query: 181 RALRAAYNNPERAVEYLYSGIPEQA-EVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
RALRAA+NNP+RAV+YL SGIPE Q + + P PA S
Sbjct: 178 RALRAAFNNPDRAVDYLLSGIPESVLAEAEAPAPAAAEQPEPAAARTESPATPA-TGGST 236
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGS------LDFLRNSPQFQVLRAMVQANPQLFP 289
SG + G L FLR PQFQ +R ++Q NP L P
Sbjct: 237 TTIAATTPATTPATTAASGTSPLGGQSEEDPLAFLREQPQFQQMRQIIQQNPSLLP 292
>gi|281345182|gb|EFB20766.1| hypothetical protein PANDA_004561 [Ailuropoda melanoleuca]
Length = 386
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 59/300 (19%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 4 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAP 63
Query: 85 GSTRSTAP---------------------------------TKAPQSSAPTPAATPATAP 111
+T+ + P T AP +++ PA PA+A
Sbjct: 64 ATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPTPSPASVTPAPTTASSEPA--PASAT 121
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
Q P + +P P +A+ S+ +S S ++ A S LV G + E + +I+ MG
Sbjct: 122 QPEKP-AEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
++R+ V+ ALRA++NNP+RAVEYL GIP + Q V P
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRDSQAVVDTP----------------- 220
Query: 232 PAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
PA V++ P ++ + G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 221 PA-VSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 279
>gi|440908044|gb|ELR58113.1| UV excision repair protein RAD23-like protein B, partial [Bos
grunniens mutus]
Length = 386
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 147/304 (48%), Gaps = 67/304 (22%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 4 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT---- 59
Query: 87 TRSTAPTKAPQS-SAPTPAATPATAPQTAVPISTEP-----------TPAPT-----PAP 129
+ AP QS SA T + +TAP + P TPAPT PAP
Sbjct: 60 --TPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPTPTPVSVTPAPTTASSEPAP 117
Query: 130 ASAS---------VSSVSATS------------ESGVYGHAASNLVAGNNLEGAIQQILD 168
ASA+ V + AT+ S ++ A S LV G + E + +I+
Sbjct: 118 ASAAKQEKPAEGPVETPVATTPASTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMS 177
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V
Sbjct: 178 MG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV------------------ 216
Query: 229 PTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
P P S+G P ++ + ++G L+FLRN PQFQ +R ++Q NP L
Sbjct: 217 -VDPPPAASTGAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSL 275
Query: 288 FPCF 291
P
Sbjct: 276 LPAL 279
>gi|380027731|ref|XP_003697572.1| PREDICTED: LOW QUALITY PROTEIN: UV excision repair protein RAD23
homolog B-like [Apis florea]
Length = 364
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 134/290 (46%), Gaps = 56/290 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGST--RSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E + E F+V+M+TK K G +T T+ +SS + A P S+
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQP----------SS 107
Query: 120 EPTPAPTPAPASASVSSVSATSESG-VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
PT +P + A++ +G V G A L+ G + + I+DMG ++R+
Sbjct: 108 NPTVQGASSPGNIIQEQSEASTTAGCVGGQAEXALLMGEDYNTMVNNIVDMG---YEREQ 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 165 VEQALRASFNNPDRAVEYLLTGIP----AQLFEDLPEDQLEAQEQLQ------------- 207
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
G L FLR PQFQ +R ++Q NPQL
Sbjct: 208 --------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|328788815|ref|XP_623093.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Apis mellifera]
Length = 364
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 134/290 (46%), Gaps = 56/290 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIE +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIEIQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGST--RSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E + E F+V+M+TK K G +T T+ +SS + A P S+
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQP----------SS 107
Query: 120 EPTPAPTPAPASASVSSVSATSESG-VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
PT +P + A++ +G V G A S L+ G + + I+DMG ++R+
Sbjct: 108 NPTVQGASSPGNIIQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YEREQ 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 165 VEQALRASFNNPDRAVEYLLTGIP----AQLFEDLPEDQLEAQEQLQ------------- 207
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
G L FLR PQFQ +R ++Q NPQL
Sbjct: 208 --------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|350404552|ref|XP_003487142.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Bombus
impatiens]
Length = 365
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 135/292 (46%), Gaps = 59/292 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + E F+V+M+TK K TG G T + + + T + A +P
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTTTEEEHTTNTDNKEESSTTSSVA---------QP 106
Query: 122 TPAPTPAPASASVSSVSATSESG-----VYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+ PT AS ++V SE+ V G A S L+ G + + I+DMG ++R
Sbjct: 107 SSNPTVQGASNPTNTVQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YER 163
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 164 EQVEQALRASFNNPDRAVEYLLTGIP----AQLFEDLPEDQLEAQEQLQ----------- 208
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
G L FLR PQFQ +R ++Q NPQL
Sbjct: 209 ----------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 238
>gi|410901673|ref|XP_003964320.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Takifugu rubripes]
Length = 367
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 151/302 (50%), Gaps = 51/302 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +E+ PE TV +K KIE +G D +P + Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSCQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTG---------------EGSTRSTAPTKAPQSSAPTPAAT 106
+ K+ E +FVV+M++K K T GST + AP ++A TP++
Sbjct: 61 DYKIDEKNFVVVMVSKAKPSTAATPPASEPPKPPLQDSGSTSTAAPAATVPATASTPSSA 120
Query: 107 PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQI 166
P P A S E P+ A + S+ G+ A+S LV G E + +I
Sbjct: 121 PTATPAAAPVPSEEAKEEPSAAITEPQQPASSSDGSQGL--DASSALVTGAEYEAMLTEI 178
Query: 167 LDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQM 226
+ MG ++R+ VV ALRA++NNP RAVEYL +GIP PV Q +N P Q
Sbjct: 179 ISMG---YERERVVAALRASFNNPHRAVEYLLTGIPS----SPV-------QESNPPVQA 224
Query: 227 PQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQ 286
PAP+ + P + P G L FLRN PQF +R +Q NP
Sbjct: 225 -----PAPLPTESPASPP---------------EGENPLAFLRNQPQFLHMRQAIQQNPN 264
Query: 287 LF 288
L
Sbjct: 265 LL 266
>gi|340374755|ref|XP_003385903.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 409
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 151/310 (48%), Gaps = 33/310 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VKTL+ +F +E++ +V D+K IE QG + +PAA Q LIY GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E++FVV+M++K K + + S+ T ATP P S+
Sbjct: 60 DYSIQESNFVVVMVSKIKPAPAPTPKPQETSSTSSSSTPSTSGATPQ-------PSSSAT 112
Query: 122 TPAPTPAPASASVSSVSATSESG-----------VYGHAASNLVAGNNLEGAIQQILDMG 170
P T AP+ + + + G + A S LV G + E + ++ MG
Sbjct: 113 APTTTSAPSGTTGTESTDGGAGGGQTSSTASSSSEFDQALSTLVTGTDYERTVNDMVGMG 172
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYLYSGIP-----EQAEVQPVARAPGNGQA--ANSP 223
+ R+ VVRAL+A+YNNP RA+EYL P E+AE QP G Q +SP
Sbjct: 173 ---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQPRGSGAGGQQVPLTSSP 229
Query: 224 TQMPQPTQPAPVT--SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMV 281
Q P +PA + S+ P+A P PQG G G + + L L PQFQ LRA V
Sbjct: 230 PQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAGGGQSASNVLQGLSQLPQFQALRAAV 287
Query: 282 QANPQLFPCF 291
Q NP L P
Sbjct: 288 QQNPGLLPSL 297
>gi|115438372|ref|XP_001218049.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188864|gb|EAU30564.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 159/299 (53%), Gaps = 30/299 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F+++ +P +TV VK +I ++G +V Q LIY GK+LKD+ T+E
Sbjct: 1 MKLTFKDLKQEKFEIDAEPSETVGQVKERICQLKGWEV---PQLKLIYSGKILKDENTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
KV E F+V M++K K S+ S AP++ P TP+ A+ P +
Sbjct: 58 SYKVEEKGFIVYMVSKPKT-----SSSSAAPSQGP----STPSRAAASTPAAPPAPAPAT 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ AP + + + S+SG + S L+ G E A+ Q+ MG + RD + R
Sbjct: 109 SAPAQAAPPATPSPAATGASQSGSAFNDPSALMTGRENENAVAQMESMG---FARDDINR 165
Query: 182 ALRAAYNNPERAVEYLYSGIPEQ---AEVQPVARAPGNGQAANSPTQMPQ-PTQPAPVTS 237
A+RAA+ NP+RAVEYL SGIP+ + Q + AA SPT PQ P+ + +T+
Sbjct: 166 AMRAAFFNPDRAVEYLLSGIPDNIQQEQQQQQQQQQAAAAAAASPT--PQAPSGESGLTT 223
Query: 238 SGPNANPLDLFP----QGLPDVGSGAAGAG----SLDFLRNSPQFQVLRAMVQANPQLF 288
+G + P++LF G D G G +LDFLR++P FQ LR +VQ NPQ+
Sbjct: 224 AGGD-EPVNLFEAAAQAGTQDTGRAGRSGGEALPNLDFLRHNPHFQQLRQLVQQNPQML 281
>gi|357138887|ref|XP_003571018.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 290
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 97/150 (64%), Gaps = 11/150 (7%)
Query: 148 HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV 207
H AS+L++G+NL+ I QI++MGGG+WDRD V RALRAAYNNPERAV+YLYSGIP AEV
Sbjct: 103 HVASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIPVTAEV 162
Query: 208 QPVARAPGNGQAANSPTQMPQPTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLD 266
P Q ANS P P SG PN PL LFPQ + GAAG GSLD
Sbjct: 163 A----VPVVPQGANSTDATP----PGVTGLSGIPNTAPLSLFPQWASNA-GGAAGGGSLD 213
Query: 267 FLRNSPQFQVLRAMVQANPQLF-PCFKSWG 295
FLRN+ QFQ LR MV NPQ+ P + G
Sbjct: 214 FLRNNQQFQALREMVHTNPQILQPMLQELG 243
>gi|340716525|ref|XP_003396748.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
4 [Bombus terrestris]
Length = 357
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 138/291 (47%), Gaps = 58/291 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT----KAPQSSAPTPAATPATAPQTAVPI 117
E + E F+V+M+TK K TG G T T +SS + A P++ P V
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSNP--TVQG 113
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
++ PT +A S ++T+ V G A S L+ G + + I+DMG ++R+
Sbjct: 114 ASNPT-------NTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YERE 163
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 164 QVEQALRASFNNPDRAVEYLLTGIP----AQLFEDLPEDQLEAQEQLQ------------ 207
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
G L FLR PQFQ +R ++Q NPQL
Sbjct: 208 ---------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|296190503|ref|XP_002743221.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Callithrix jacchus]
Length = 388
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 148/299 (49%), Gaps = 56/299 (18%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAP-----------TKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASAS 133
+T+ +AP T Q+ P PA P + P + P S T +P PAPASA+
Sbjct: 65 ATTQQSAPASTTAVTSSTVTTVAQAPTPAPALAPTSTPSSVTPASA--TASPEPAPASAT 122
Query: 134 VSSVSATS---------------------ESGVYGHAASNLVAGNNLEGAIQQILDMGGG 172
A S ++ A S LV G + E + +I+ MG
Sbjct: 123 KQEKPAEKPAETPVASSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG-- 180
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ +
Sbjct: 181 -YEREQVIAALRASFNNPDRAVEYLLMGIPGDRENQAVVDPP---QAAS--TGAPQSSAV 234
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
A ++ + ++G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 235 AAAAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 281
>gi|340716521|ref|XP_003396746.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Bombus terrestris]
Length = 348
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 138/291 (47%), Gaps = 58/291 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT----KAPQSSAPTPAATPATAPQTAVPI 117
E + E F+V+M+TK K TG G T T +SS + A P++ P V
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSNP--TVQG 113
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
++ PT +A S ++T+ V G A S L+ G + + I+DMG ++R+
Sbjct: 114 ASNPT-------NTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YERE 163
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 164 QVEQALRASFNNPDRAVEYLLTGIP----AQLFEDLPEDQLEAQEQLQ------------ 207
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
G L FLR PQFQ +R ++Q NPQL
Sbjct: 208 ---------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|340716523|ref|XP_003396747.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Bombus terrestris]
Length = 337
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 138/291 (47%), Gaps = 58/291 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT----KAPQSSAPTPAATPATAPQTAVPI 117
E + E F+V+M+TK K TG G T T +SS + A P++ P V
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSNP--TVQG 113
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
++ PT +A S ++T+ V G A S L+ G + + I+DMG ++R+
Sbjct: 114 ASNPT-------NTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YERE 163
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 164 QVEQALRASFNNPDRAVEYLLTGIP----AQLFEDLPEDQLEAQEQLQ------------ 207
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
G L FLR PQFQ +R ++Q NPQL
Sbjct: 208 ---------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|340716519|ref|XP_003396745.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Bombus terrestris]
Length = 364
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 138/291 (47%), Gaps = 58/291 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT----KAPQSSAPTPAATPATAPQTAVPI 117
E + E F+V+M+TK K TG G T T +SS + A P++ P V
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSNP--TVQG 113
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
++ PT +A S ++T+ V G A S L+ G + + I+DMG ++R+
Sbjct: 114 ASNPT-------NTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YERE 163
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 164 QVEQALRASFNNPDRAVEYLLTGIP----AQLFEDLPEDQLEAQEQLQ------------ 207
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
G L FLR PQFQ +R ++Q NPQL
Sbjct: 208 ---------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
>gi|441628881|ref|XP_003275714.2| PREDICTED: UV excision repair protein RAD23 homolog A [Nomascus
leucogenys]
Length = 397
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 117/207 (56%), Gaps = 16/207 (7%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIP 202
R+ VV ALRA+YNNP RAVEYL +GIP
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|307211720|gb|EFN87721.1| UV excision repair protein RAD23-like protein A [Harpegnathos
saltator]
Length = 357
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 133/294 (45%), Gaps = 66/294 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E+ TV D+K KIET +G PA QQ LIY GK+L D+ L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKQKIETQKG---LPAEQQKLIYAGKILADEQPLT 57
Query: 62 ENKVAENSFVVIMLTKNKR---PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
E + E F+V+M+TK K P R+ K +S+
Sbjct: 58 EYNIDEKKFIVVMVTKPKTSATPKTSDEQRTEGDNKEESTSSSV---------------- 101
Query: 119 TEPTPAPTPAPASASVSSVSATSESGV----YGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+P PT S + S+V + V G A S L+ G + ++ I+DMG +
Sbjct: 102 AQPSPNPTVQDTSRAASTVQEQIAAAVPAAGCGQAESALLMGEDYNTMVKNIMDMG---Y 158
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV+ALRA++NNP+RAVEYL +GIP Q P P + +Q P
Sbjct: 159 EREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQSQDP------- 211
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
L FLR PQFQ +R ++Q NPQL
Sbjct: 212 ------------------------------LAFLRMQPQFQQMRQVIQQNPQLL 235
>gi|344271527|ref|XP_003407589.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Loxodonta africana]
Length = 613
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 151/305 (49%), Gaps = 68/305 (22%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 230 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK------A 283
Query: 87 TRSTAPTKAPQSSAP---------------------------------TPAATPAT---A 110
+ AP PQ S P TPA+T A+ A
Sbjct: 284 VTTPAPA-TPQQSNPATTAAVSSSTAAAVAQAPAPAPALAPTSTPTSITPASTTASSEPA 342
Query: 111 PQTAVPISTEPTPAPTPAPASAS----VSSVSATSESGVYGHAASNLVAGNNLEGAIQQI 166
P +A +PT PT P +AS S+ +S S ++ A S LV G + E + +I
Sbjct: 343 PASAT-QQEKPTEKPTETPVAASPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEI 401
Query: 167 LDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQM 226
+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA++ T
Sbjct: 402 MSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAASTGT-- 453
Query: 227 PQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQ 286
PQ + A ++ + ++G L+FLRN PQFQ +R ++Q NP
Sbjct: 454 PQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPS 501
Query: 287 LFPCF 291
L P
Sbjct: 502 LLPAL 506
>gi|410978807|ref|XP_003995779.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Felis catus]
Length = 387
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 145/298 (48%), Gaps = 55/298 (18%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAP 64
Query: 85 GSTRSTAP--------------TKAPQSSAP----------TPAAT-------PATAPQT 113
+T+ + P + P S TPA+T PA+A +
Sbjct: 65 ATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPTPTPASITPASTTASSEPAPASATKQ 124
Query: 114 AVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
P + +P P +++ S+ +S S ++ A S LV G + E + +I+ MG
Sbjct: 125 EKP-AEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG--- 180
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA 233
++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P PA
Sbjct: 181 YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDTP-----------------PA 223
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
V++ P ++ + + G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 224 -VSTGAPQSSVAAAAATTTASTTTASPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 280
>gi|338720420|ref|XP_003364163.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Equus caballus]
Length = 387
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 138/304 (45%), Gaps = 67/304 (22%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT---- 82
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAP 64
Query: 83 ---------------------------------GEGSTRSTAPTKAPQSSAPTPA-ATPA 108
+ S P SS P PA AT
Sbjct: 65 ATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPAPTPASITPASTTASSEPAPASATKQ 124
Query: 109 TAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD 168
P + +P AP +++ S+ +S S ++ A S LV G + E + +I+
Sbjct: 125 EKP------AEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMS 178
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V
Sbjct: 179 MG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV------------------ 217
Query: 229 PTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
P P S+G P ++ + ++G L+FLRN PQFQ +R ++Q NP L
Sbjct: 218 -VDPPPAASTGAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSL 276
Query: 288 FPCF 291
P
Sbjct: 277 LPAL 280
>gi|194213056|ref|XP_001914974.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Equus
caballus]
Length = 393
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 132/264 (50%), Gaps = 46/264 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K
Sbjct: 58 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPSSAV 117
Query: 87 TRSTAPTKAPQSSA---PTPA---ATPATAPQTAVPISTEPTPAPTPAPASASVSSVSAT 140
T+PT AP+SS P PA + P AP+ S E PA +P S SV S ++
Sbjct: 118 PPETSPTAAPESSTTFPPAPASGMSHPPPAPREDKSPSEESIPATSPESVSGSVPSSGSS 177
Query: 141 SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200
AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +G
Sbjct: 178 GRE---EDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTG 231
Query: 201 IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAA 260
IP E P +G S QPT + AA
Sbjct: 232 IPGSPE-------PEHGSVQESQVS-EQPT--------------------------TEAA 257
Query: 261 GAGSLDFLRNSPQFQVLRAMVQAN 284
G L+FLR+ PQFQ +R ++Q N
Sbjct: 258 GENPLEFLRDQPQFQNMRQVIQQN 281
>gi|194332576|ref|NP_001123777.1| uncharacterized protein LOC100170527 [Xenopus (Silurana)
tropicalis]
gi|156914684|gb|AAI52591.1| Zgc:123349 [Danio rerio]
gi|189441745|gb|AAI67540.1| LOC100170527 protein [Xenopus (Silurana) tropicalis]
Length = 404
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 159/335 (47%), Gaps = 64/335 (19%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I +KTL+ +F V++ E TV +K KIE +G D +PA Q LIY GK+L DD L
Sbjct: 1 MLTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPL 60
Query: 61 EENKVAENSFVVIMLTKNKR----------PTGEGSTRSTAPTKAPQSSAPTPAATPATA 110
+E K+ E +FVV+M+TK K P E T AP +++ P TP A
Sbjct: 61 KEYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQPTTPVAPPNASIVPETTPDPA 120
Query: 111 P----QTAVPI----------------STEPTPAPTPAPA-----------SASVSSVSA 139
P + PI +TEP A TPAP + + S S
Sbjct: 121 PVEPAASVEPIDPPITAPPAASEDTVETTEPVSA-TPAPVVEEEIQGQEEQAIAQSEASL 179
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
T E + AAS LV G E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL +
Sbjct: 180 TDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLT 236
Query: 200 GIPEQAEV--QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGS 257
GIP ++E Q V R + Q QP A S G
Sbjct: 237 GIPAESEQPPQEVVRPTPSSNPTPPAPQRAQPPPAAAGAES-----------------GG 279
Query: 258 GAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCFK 292
A A L+FLR+ PQFQ +R ++Q NP L P +
Sbjct: 280 AQASANPLEFLRHQPQFQQMRQIIQQNPSLLPALQ 314
>gi|355768543|gb|EHH62732.1| UV excision repair protein RAD23-like protein A, partial [Macaca
fascicularis]
Length = 339
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 133/262 (50%), Gaps = 42/262 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G +
Sbjct: 4 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSA 63
Query: 87 TRSTAPTKAPQSSAPTPAA--TPATAPQTAVPISTEPTP--APTPAPASASVSSVSATSE 142
+PT AP+SS P A + + PQ A P+ APT +P S S S S+ S
Sbjct: 64 PPEASPTAAPESSTSFPPAPTSGMSHPQPAAREDKSPSEESAPTTSPESVSGSVPSSGSS 123
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP
Sbjct: 124 GR-EEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 179
Query: 203 EQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA 262
E P +G S QPA + AAG
Sbjct: 180 GSPE-------PEHGSVQESQVS----EQPA-----------------------TEAAGE 205
Query: 263 GSLDFLRNSPQFQVLRAMVQAN 284
L+FLR+ PQFQ +R ++Q N
Sbjct: 206 NPLEFLRDQPQFQNMRQVIQQN 227
>gi|307189318|gb|EFN73749.1| UV excision repair protein RAD23-like protein B [Camponotus
floridanus]
Length = 363
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 133/292 (45%), Gaps = 63/292 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E+ TV D+K KIET +G +PA Q LIY GK+L D+ L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLT 57
Query: 62 ENKVAENSFVVIMLTKNK-----RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
E + E F+V+M+TK K + + E ST + SSA T ++ T +T
Sbjct: 58 EYNIDEKKFIVVMVTKPKAGATPKTSEEQRAESTDNKEESTSSATTQPSSNPTVQETLQA 117
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S + P PA+ G A S L+ G + + I+DMG ++R
Sbjct: 118 ASNVQEQSAVPTPAA---------------GQAESALLMGEDYNTMVNNIMDMG---YER 159
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV+ALRA++NNP+RAVEYL +GIP Q P P + +Q P
Sbjct: 160 EQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQSQDP--------- 210
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
L FLR PQFQ +R ++Q NPQL
Sbjct: 211 ----------------------------LAFLRMQPQFQQMRQVIQQNPQLL 234
>gi|392576824|gb|EIW69954.1| hypothetical protein TREMEDRAFT_68394 [Tremella mesenterica DSM
1558]
Length = 379
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 152/295 (51%), Gaps = 27/295 (9%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+KI +KT++ F VE + +TV DVK KIE S +P QQ +IY GK+L+DDT++
Sbjct: 1 MVKITLKTVQNKLFTVEAEEAETVGDVKRKIEE---SQTFPVEQQKIIYSGKILQDDTSI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
K+ E F+V+M++K P AP+ A P +A ++
Sbjct: 58 GSLKIKEKDFLVVMVSK--------------PKAAPKPVATPTPTEPPAPVASASEVTPA 103
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
A A + ++ +A + + G ++S+ V G L+ AI +++MG ++ D VV
Sbjct: 104 APAASPIAGLDTTAAAPAAETATSATGLSSSSFVTGPALQAAISSMVEMG---FEHDQVV 160
Query: 181 RALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQ-----PAP 234
RALRA+YNNP+RAV+YL SG IPE P A AP A PT P+Q A
Sbjct: 161 RALRASYNNPDRAVDYLMSGNIPEVEGPAPAATAPPTQTAPTIPTPAAAPSQTPAAPAAQ 220
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGA-AGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
SG + +LF D G+ A A SL+ L NSPQ Q LR MVQ NP L
Sbjct: 221 PAPSGSAGSAENLFATVARDRGTSAPANVPSLEALGNSPQLQRLRQMVQQNPALI 275
>gi|354479499|ref|XP_003501947.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Cricetulus griseus]
Length = 375
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 133/265 (50%), Gaps = 48/265 (18%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD ++E + E +FVV+M+TK K +
Sbjct: 40 LKEKIEAEKGRDAFPVAGQKLIYAGKILNDDVPIKEYHIDEKNFVVVMVTKAKAGQSTPA 99
Query: 87 TRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSS-------VSA 139
+PT AP+SS P P A P + P S E +P+ SA+ +S V +
Sbjct: 100 PPEVSPTAAPESSTPFPPA-PTSGMSHPPPASREDK---SPSEESATATSPESISGSVPS 155
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
+ SG AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +
Sbjct: 156 SGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLT 212
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIP E P +G S P QPA A
Sbjct: 213 GIPGSPE-------PEHGSVQESQV----PEQPA-----------------------VEA 238
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 239 AGENPLEFLRDQPQFQNMRQVIQQN 263
>gi|348518002|ref|XP_003446521.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Oreochromis niloticus]
Length = 365
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 146/290 (50%), Gaps = 43/290 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +E+ PE TV +K KIE +G D +P + Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ K+ E +FVV+M++K K + S AP Q S T A P T P A +
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAAAASPSVSEAPKPPVQDSGSTSTAAPTTNPTPAPAPAPAA 120
Query: 122 TPAPTPAPASASVSSVS------ATSESGVYG-HAASNLVAGNNLEGAIQQILDMGGGTW 174
P P+ A S+V+ A+S G G A+S LV G E + +I+ MG +
Sbjct: 121 VPIPS-GEAKEESSAVATEPQQPASSSGGSQGLDASSTLVTGAEYEAMLTEIMSMG---Y 176
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA++NNP RAVEYL +GIP +SP Q P PA
Sbjct: 177 ERERVVAALRASFNNPHRAVEYLLTGIP------------------SSPVQESNP--PAQ 216
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+SG P +P+ G L FLR PQF +R +Q N
Sbjct: 217 APTSGTTEAP------SVPE------GENPLAFLRTQPQFLHMRQAIQQN 254
>gi|256082440|ref|XP_002577464.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|84657284|gb|ABC60029.1| DNA repair protein [Schistosoma mansoni]
gi|360044630|emb|CCD82178.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 354
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 155/305 (50%), Gaps = 50/305 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL +F ++ + +D + DVK KIE GS+ + A Q LI+ GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ KV E+ FVV+M +P+ + + ++A + S PT P T ++ V TE
Sbjct: 60 DYKVTESGFVVVMSVS--KPSKDTTKEASASVQ----SNPTGETKPTTDKKSPV---TEA 110
Query: 122 TPAPTPAPASASVSSV-----SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
AP+ P + S S++ + +S + G S+LV G N E +++++ MG ++R
Sbjct: 111 NEAPSSKPDANSQSNLPTVTTAPSSATSTLGFGESSLVTGENFERVVKELMSMG---FER 167
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
V++A+RA +NNP+RA EYL SG ++ +R ++ +
Sbjct: 168 SLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIVDQSREREESESVS--------------- 212
Query: 237 SSGPNANPLDLFPQGLPDVGS-GAAGAGSLD---FLRNSPQFQVLRAMVQANPQLFP-CF 291
P+G D + G+ GS D L + PQFQ +RA+VQANP+L P
Sbjct: 213 ------------PEGPGDTDTPGSESLGSEDPIAALASLPQFQQMRALVQANPELLPQLI 260
Query: 292 KSWGN 296
+ GN
Sbjct: 261 QQIGN 265
>gi|281353038|gb|EFB28622.1| hypothetical protein PANDA_009870 [Ailuropoda melanoleuca]
Length = 339
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 131/265 (49%), Gaps = 48/265 (18%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G
Sbjct: 4 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPGTSV 63
Query: 87 TRSTAPTKAPQSSA---PTPAAT----PATAPQTAVPISTEPTPAPTPAPASASVSSVSA 139
+PT AP+SS P PA+ P TA + P S E P +P S SV S +
Sbjct: 64 PPEASPTAAPESSTSFPPAPASGMSHPPPTAREDKSP-SEESVPTTSPESVSGSVPSSGS 122
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
+ AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +
Sbjct: 123 SGRE---EDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLT 176
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIP E P +G S QPA +
Sbjct: 177 GIPGSPE-------PEHGSVQESQVS----EQPA-----------------------TEG 202
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 203 AGENPLEFLRDQPQFQNMRQVIQQN 227
>gi|283945482|ref|NP_001164652.1| nuclear excision repair protein rad23 [Bombyx mori]
gi|217331039|gb|ACK38234.1| nuclear excision repair protein Rad23 [Bombyx mori]
Length = 324
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 129/287 (44%), Gaps = 71/287 (24%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +E+ PE+TV +K+KIE +G D + A Q LIY GK+L DD +
Sbjct: 1 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+VIM+TK K + T ++ P +S + A P T P
Sbjct: 60 SYNIDEKKFIVIMVTKPKVSESQ-PTSTSIPEAGESASTDSGDAKPKTVP---------- 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P P +A V+ T N + LE IQ I+DMG +DR V +
Sbjct: 109 -PEEVVKPTTAETERVTET----------PNTTSDAELEATIQSIMDMG---YDRPQVEQ 154
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRA++NN ERAVEYL +GIPE+ +A S + P
Sbjct: 155 ALRASFNNRERAVEYLITGIPEE--------LLHEQEAEESSDEDP-------------- 192
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
L FLR+ PQFQ +RA++Q NP L
Sbjct: 193 -----------------------LAFLRDQPQFQQMRAVIQQNPNLL 216
>gi|325187409|emb|CCA21947.1| UV excision repair protein RAD23 putative [Albugo laibachii Nc14]
Length = 420
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 142/292 (48%), Gaps = 62/292 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTL+G +F +E +P DTV VK KI+ Q +PA QQ LI+ GK+LKDDT L
Sbjct: 1 MKLTVKTLQGNAFSIEAEPTDTVAVVKTKIQETQE---FPAIQQKLIHAGKILKDDTALS 57
Query: 62 ENKVAENSFVVIMLTKNK--RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E + EN F+V+M++K K RPT + STA + P P P+ + ++ +T+ P+S
Sbjct: 58 EYNIKENDFIVVMVSKAKGSRPT--SALPSTATAQTPTVPPPVPSTSAVSSSETSTPLSV 115
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ PT + + S ++ AA+ + Q+ DMG + + V
Sbjct: 116 SSSTRPT-TEGTMASGSSGTSTTPSSTAEAAN-----------VGQLCDMG---FPEEQV 160
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
L+AA+ NP+RAVEYL +GIPE V P + AA +PT
Sbjct: 161 RSCLQAAFGNPDRAVEYLMNGIPENL-VNPTS-------AAAAPT--------------- 197
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
+G AGSL+ LRN PQF R +V+ NP P
Sbjct: 198 -----------------TGGPSAGSLEQLRNHPQFASFREVVRTNPAALPAL 232
>gi|304367641|gb|ADM26628.1| nucleotide excision repair factor Rad23 [Polypedilum vanderplanki]
Length = 383
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 137/302 (45%), Gaps = 43/302 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ + +E TV +K KIE+ G + YPA+QQ LIY G +L DD T+E
Sbjct: 1 MWITIKNLQQQTIKLEFDESQTVQKLKEKIESELGKE-YPASQQKLIYAGCILDDDKTIE 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGE-------GSTRSTAPTKAPQSSAPTPAATPATAPQTA 114
KV E F+V+M+ K G T + T + TPA+ T +
Sbjct: 60 SYKVDEKKFIVVMVKKATVAAAAAPEKEEAGKTITNEST-TEKKKEDTPASKSTTTASST 118
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
S + A+ +S A + A +NLV G N +Q I++MG +
Sbjct: 119 SSPSKSSSEQSQQPAAAQETASGGAAASQSQIAQAEANLVMGENYNTMVQNIMEMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
DRD+VVRAL A++NNPERAVEYL +GIPE M +PAP
Sbjct: 176 DRDSVVRALNASFNNPERAVEYLITGIPE----------------------MALQDRPAP 213
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGS--------LDFLRNSPQFQVLRAMVQANPQ 286
V + + L D S A +G L FLR QFQ +R ++Q NP+
Sbjct: 214 VGGNEQSGGGGGNIGAAL-DRSSNLASSGESGGNDESPLAFLRRQAQFQQMRNVIQQNPE 272
Query: 287 LF 288
+
Sbjct: 273 ML 274
>gi|226470142|emb|CAX70352.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489693|emb|CAX74997.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489695|emb|CAX74998.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489697|emb|CAX74999.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
Length = 350
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 153/301 (50%), Gaps = 46/301 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTLK +F ++++ +D V DVK KIE +GS+ + A+ Q LI+ GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ KV ++ FVV+M +P EGS ++AP PT T P V S
Sbjct: 60 DYKVTDSGFVVVMSV--SKPAKEGS--ASAPGNPAGEGRPT---TDKKIPDVDVTESPSS 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P P S + + ++ + G S+LV G N E +Q+++ MG +++ V+R
Sbjct: 113 KPDANSQP-SLPTVTTTQSTTTNTLGFGESSLVTGENFERVVQELVSMG---FEKPLVIR 168
Query: 182 ALRAAYNNPERAVEYLYSG-IPEQAEV-QPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RA +NNP+RA EYL SG IP V QP R G + SP AP +
Sbjct: 169 AMRAGFNNPDRAFEYLSSGNIPNIDIVDQPSQR---EGSESVSPE--------APGDADT 217
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLD---FLRNSPQFQVLRAMVQANPQLFP-CFKSWG 295
P G+ AGS D L + PQFQ +RA+VQANP+L P + G
Sbjct: 218 P-----------------GSESAGSEDPIAALASLPQFQQMRALVQANPELLPQLIQQIG 260
Query: 296 N 296
N
Sbjct: 261 N 261
>gi|256082442|ref|XP_002577465.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|360044631|emb|CCD82179.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 341
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 151/300 (50%), Gaps = 53/300 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL +F ++ + +D + DVK KIE GS+ + A Q LI+ GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ KV E+ FVV+M +P+ + + ++A + S PT P T ++ V + E
Sbjct: 60 DYKVTESGFVVVMSVS--KPSKDTTKEASASVQ----SNPTGETKPTTDKKSPVTEANE- 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+ T AP+SA+ G S+LV G N E +++++ MG ++R V++
Sbjct: 113 APSITTAPSSAT----------STLGFGESSLVTGENFERVVKELMSMG---FERSLVIQ 159
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RA +NNP+RA EYL SG ++ +R ++ +
Sbjct: 160 AMRAGFNNPDRAFEYLSSGNIPNVDIVDQSREREESESVS-------------------- 199
Query: 242 ANPLDLFPQGLPDVGS-GAAGAGSLD---FLRNSPQFQVLRAMVQANPQLFP-CFKSWGN 296
P+G D + G+ GS D L + PQFQ +RA+VQANP+L P + GN
Sbjct: 200 -------PEGPGDTDTPGSESLGSEDPIAALASLPQFQQMRALVQANPELLPQLIQQIGN 252
>gi|332853400|ref|XP_003316200.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pan
troglodytes]
Length = 463
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 127/266 (47%), Gaps = 51/266 (19%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G +
Sbjct: 129 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSA 188
Query: 87 TRSTAPTKAPQSS-----APTPAAT---PATAPQTAVPISTEPTPAPTPAPASASVSSVS 138
+PT AP+SS APT + PA + + PT +P S S S
Sbjct: 189 PPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSS 248
Query: 139 ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198
E AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL
Sbjct: 249 GREED-----AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLL 300
Query: 199 SGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG 258
+GIP E P +G S QPA
Sbjct: 301 TGIPGSPE-------PEHGSVQESQVS----EQPA------------------------T 325
Query: 259 AAGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 326 EAGENPLEFLRDQPQFQNMRQVIQQN 351
>gi|297703760|ref|XP_002828804.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pongo
abelii]
Length = 485
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 127/266 (47%), Gaps = 51/266 (19%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G +
Sbjct: 151 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSA 210
Query: 87 TRSTAPTKAPQSS-----APTPAAT---PATAPQTAVPISTEPTPAPTPAPASASVSSVS 138
+PT AP+SS APT + PA + + PT +P S S S
Sbjct: 211 PPEASPTAAPESSTSFLPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSS 270
Query: 139 ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198
E AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL
Sbjct: 271 GREED-----AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLL 322
Query: 199 SGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG 258
+GIP E P +G S QPA
Sbjct: 323 TGIPGSPE-------PEHGSVQESQVS----EQPA------------------------T 347
Query: 259 AAGAGSLDFLRNSPQFQVLRAMVQAN 284
AG L+FLR+ PQFQ +R ++Q N
Sbjct: 348 EAGENPLEFLRDQPQFQNMRQVIQQN 373
>gi|301771238|ref|XP_002921030.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ailuropoda melanoleuca]
Length = 375
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 131/265 (49%), Gaps = 49/265 (18%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G
Sbjct: 41 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPGTSV 100
Query: 87 TRSTAPTKAPQSSA---PTPAAT----PATAPQTAVPISTEPTPAPTPAPASASVSSVSA 139
+PT AP+SS P PA+ P TA + P S E P +P S SV S +
Sbjct: 101 PPEASPTAAPESSTSFPPAPASGMSHPPPTAREDKSP-SEESVPTTSPESVSGSVPSSGS 159
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
+ AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +
Sbjct: 160 SGRE---EDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLT 213
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIP E P +G S QPA T G N
Sbjct: 214 GIPGSPE-------PEHGSVQESQVS----EQPA--TEGGENP----------------- 243
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQAN 284
L+FLR+ PQFQ +R ++Q N
Sbjct: 244 -----LEFLRDQPQFQNMRQVIQQN 263
>gi|432885045|ref|XP_004074630.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 395
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 147/297 (49%), Gaps = 28/297 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F +++ E+TV +K +IE +G + + A Q LIY GK+L DDT L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVKTLKERIEQEKGKESFSVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNK------RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV 115
E K+ E +FVV+M+TK K + + S+ ++ + ++A + A P
Sbjct: 61 EYKIDEKNFVVVMVTKPKTAAPSPKSSSASSSAPSSAPSSAAAAAAPTPPSVADKPAEVA 120
Query: 116 PIST-EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P E + T P + S+ S + + A S LV G++ + + +++ MG +
Sbjct: 121 PADKLEEKESSTAEPPPPPPPARSSESSTDLLSEAVSTLVTGSSYDTMVNEMMLMG---Y 177
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP+RAVEYL SGIP GQ S T P T P
Sbjct: 178 EREQVVAALRASYNNPDRAVEYLLSGIP--------------GQDQGSRTG-PDST---P 219
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
S P A + A G L FLRN PQF V+R ++Q N L P
Sbjct: 220 AVSESPAAPAGGTAAPTSTESSPSAGGGNPLGFLRNQPQFHVMRQLIQQNAALLPAL 276
>gi|195450799|ref|XP_002072638.1| GK13711 [Drosophila willistoni]
gi|194168723|gb|EDW83624.1| GK13711 [Drosophila willistoni]
Length = 420
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 144/303 (47%), Gaps = 51/303 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VK L+ +F ++ PE TV ++K KI +G++ P Q+ LIY G +L DD +
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKKKIFEERGAEYLPEKQK-LIYAGVILVDDRKIS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
KV E F+V+MLT++ P+ ST ++ K A P+ P T P
Sbjct: 60 SYKVDEKKFIVVMLTRDAAPSSASSTTASTSEKV--------AEKPSEKKTNPEPTPTAP 111
Query: 122 TPAPTPAPASASVSS----------------VSATSESGVYGHAASNLVAGNNLEGAIQQ 165
+PA AP ASV+S VS T+ S A S+L+ G +
Sbjct: 112 SPAAVSAPVPASVASSGASGTTSDSPNTETTVSPTAPSTDQTRAESSLLMGEEYNRTVSS 171
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
+++MG + R+ V RA+ A++NNPERAVEYL +GIP + + Q
Sbjct: 172 MVEMG---YPREQVERAMAASFNNPERAVEYLINGIPAEED------------------Q 210
Query: 226 MPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANP 285
+ T P + S PN D P SG + A +FLR+ PQF +R+++ NP
Sbjct: 211 LFNDTD--PTSQSNPNPRVADASSINAP---SGRSTADPFEFLRSQPQFLQMRSLIYQNP 265
Query: 286 QLF 288
QL
Sbjct: 266 QLL 268
>gi|156362373|ref|XP_001625753.1| predicted protein [Nematostella vectensis]
gi|156212600|gb|EDO33653.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 45/300 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I KTL+ +F VE+ ++TV +K KIE +G D YP LIY GK+L DD L+
Sbjct: 1 MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + E SFVVIM+ K K + T PQ++ +P+ ++ Q +P
Sbjct: 61 EYNIDEKSFVVIMVAKPKP-APAAVAPAPVTTTIPQAATASPSTQASSTAQEDSKPEAKP 119
Query: 122 TPAPTPAPASASVSSVSATSE-----SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
A + + +A+ ++ +A++ A S L G EG + +I++MG ++R
Sbjct: 120 DEAKSTSTETAASATTTASTPAASTPRSYIEEAESALATGTEYEGLVTEIMNMG---FER 176
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
D VVRAL+A++NNP+RAVEYL +GIP+ P R G
Sbjct: 177 DQVVRALQASFNNPDRAVEYLTTGIPD----LPSERVGDQG------------------- 213
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP-CFKSWG 295
Q + + A G SL+FLR PQF +R MVQ NP + P +S G
Sbjct: 214 ------------GQDEGEEETAAEGVSSLEFLRTQPQFITMRRMVQQNPGVLPQLLQSMG 261
>gi|47205078|emb|CAF91196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 133/288 (46%), Gaps = 70/288 (24%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +E+ PE TV +K KIE +G D +P + Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+ E +FVV+M++K G G+ Q+ PT ++ P
Sbjct: 61 EYKIDERNFVVVMVSK----VGAGN----------QTHRPTVSSRPLAF----------- 95
Query: 122 TPAPTPAPASASVSSVSATSESGVYG-HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+S G G A+S LV G E + +I+ MG ++R+ VV
Sbjct: 96 -----------------CSSSDGSQGLDASSALVTGAEYEAMLTEIISMG---YERERVV 135
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRA++NNP RAVEYL +GIP PV + A +P P PA
Sbjct: 136 AALRASFNNPHRAVEYLLTGIPS----SPVQES-NPPAQAPAPLPTESPASPAE------ 184
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
FP G L FLRN PQF +R +Q NP L
Sbjct: 185 -----GCFP--------ACPGENPLAFLRNQPQFLHMRQAIQQNPNLL 219
>gi|440902080|gb|ELR52923.1| UV excision repair protein RAD23-like protein A [Bos grunniens
mutus]
Length = 391
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 145/302 (48%), Gaps = 48/302 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFV--------------VIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA---- 105
++ E +FV +++ K G +PT P+SS P+A
Sbjct: 65 RIDEKNFVVVMVTKVGVLMPAPFFWVSQAKTSPGTSVPSEASPTATPESSTSFPSAPASG 124
Query: 106 ---TPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGA 162
P TA + P S E P +P S SV S + AAS LV G+ E
Sbjct: 125 MSHPPPTAREDKSP-SEESAPTTSPESVSGSVPSSGSGGRE---EDAASTLVTGSEYETM 180
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+ +I+ MG ++R+ VV ALRA+YNNP RAVEYL + E + R G G+A
Sbjct: 181 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTVRKELLQEPGGERWGGPGRAERR 237
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
P P PA +G A VG+ G L+FLR+ PQFQ +R ++Q
Sbjct: 238 P-----PVSPARAEYAGGAA------------VGT---GENPLEFLRDQPQFQNMRQVIQ 277
Query: 283 AN 284
N
Sbjct: 278 QN 279
>gi|384493836|gb|EIE84327.1| UV excision repair protein Rad23 [Rhizopus delemar RA 99-880]
Length = 386
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 152/311 (48%), Gaps = 34/311 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
++I VKTL+ F ++V DT+ VK KI+ QG + AQQ LI+ GK+L DD +E
Sbjct: 4 LQITVKTLQQKQFKLDVDSSDTILSVKEKIQESQG---HAVAQQKLIFSGKILVDDKKVE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA-PTPAATPATAPQTAVPISTE 120
+ + E F+V+M+ K K S +++ + +S+ PA T +TA +T
Sbjct: 61 DYNITEKDFLVVMVAKAKATPASSSAAASSASTPKESATQEKPAETAPKPAETAAAATTP 120
Query: 121 PTPA-PTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
A P P +++ ++ + T+ + S LV G+ LE ++ ++ MG ++R
Sbjct: 121 SNIASPASEPPASTPAAPTETTTTATPADTFSQLVTGSQLESVVENMMSMG---FERAQC 177
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS-S 238
RALRA++NNP+RAVEYL++GIPE N+ Q P+ Q S +
Sbjct: 178 ERALRASFNNPDRAVEYLFNGIPEHI-----------LNEMNAAQQQPEVQQDTNTQSPT 226
Query: 239 GPNAN----PLDLF---------PQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANP 285
PNAN ++LF Q SL RN+P FQ +R +VQ NP
Sbjct: 227 TPNANDANASMNLFAAAQQHAQQQQQQQQQEQNQNLNASLANFRNTPHFQQIRQLVQTNP 286
Query: 286 QLF-PCFKSWG 295
L P +S G
Sbjct: 287 ALLQPLLQSIG 297
>gi|345565734|gb|EGX48682.1| hypothetical protein AOL_s00079g321 [Arthrobotrys oligospora ATCC
24927]
Length = 408
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 108/328 (32%), Positives = 160/328 (48%), Gaps = 47/328 (14%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
++K+ K LK F +E DT+ VK +I+T +G + + LIY GK+L+D T+
Sbjct: 4 IVKLTFKDLKNERFTIEAGTADTISTVKARIQTEKG---WEPSTVKLIYSGKILQDAQTV 60
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT-----APQTAV 115
+ E F+V M++K K S+ S A P S+ TP TP+ A + V
Sbjct: 61 GSYNIDEKGFIVCMVSKAKTAPKASSSSSAAAPSTPVKSS-TPVQTPSAPIANAASSSTV 119
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
P + TP P P A+ S + +A ++ S+L G+ E AI Q+ +MG +
Sbjct: 120 PAAVPETPTPAPQVAATSQPTTAAFNDP-------SSLAMGSARESAILQMTEMG---FP 169
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPE--QAEVQPV--ARAPGNGQAANSPTQMPQPTQ 231
R V A+RAA+NNP+RAVEYL +GIPE Q E P +RAP + T+
Sbjct: 170 RPDVEAAMRAAFNNPDRAVEYLMTGIPEHLQREAPPAQSSRAPPTQPTTGATAAPAATTE 229
Query: 232 PAPVTSSGPNAN---PLDLFP---------QGLPDVGSGAAGAG-----------SLDFL 268
P ++ A+ P++LF +G P G G A +LDFL
Sbjct: 230 SQPAAAAAAAADVDEPVNLFEAAAAQRSGSRGTPAGGRGGAAVNPLAALAGGGGANLDFL 289
Query: 269 RNSPQFQVLRAMVQANPQLF-PCFKSWG 295
RN+PQFQ LR ++Q +PQ+ P + G
Sbjct: 290 RNNPQFQQLRQVIQEHPQMLEPILQQVG 317
>gi|126002609|ref|XP_001352382.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
gi|54640152|gb|EAL29275.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
Length = 430
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 142/305 (46%), Gaps = 47/305 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VK L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 62 ENKVAENSFVVIMLTKNK--------------RPTGEGSTRSTAPTKAPQSS-APTPAAT 106
K+ E F+V+MLT++ + T E + K + + + T +T
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGST 119
Query: 107 PAT-APQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQ 165
P + A ++A +S T P S+S V + + + A SNL+ G +
Sbjct: 120 PISGAVESAPSVSVSSTGTAIQRPYSSS-DLVGELANASLQTRAESNLLMGEEYNKTVLS 178
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
+++MG + RD V RA+ A++NNPERAVEYL +GIP + E A N Q +P
Sbjct: 179 MVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDESLFNAGDETNNQNPRAPGS 235
Query: 226 MP--QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQA 283
P +P P SS P +FLR+ PQF +R+++
Sbjct: 236 QPISEPAVDLPAQSSDP------------------------FEFLRSQPQFLQMRSLIYQ 271
Query: 284 NPQLF 288
NP L
Sbjct: 272 NPHLL 276
>gi|195172518|ref|XP_002027044.1| GL18167 [Drosophila persimilis]
gi|194112822|gb|EDW34865.1| GL18167 [Drosophila persimilis]
Length = 430
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 142/305 (46%), Gaps = 47/305 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VK L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 62 ENKVAENSFVVIMLTKNK--------------RPTGEGSTRSTAPTKAPQSS-APTPAAT 106
K+ E F+V+MLT++ + T E + K + + + T +T
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGST 119
Query: 107 PAT-APQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQ 165
P + A ++A +S T P S+S V + + + A SNL+ G +
Sbjct: 120 PISGAVESAPSVSVSSTGTAIQRPYSSS-DLVGELANASLQTRAESNLLMGEEYNKTVLS 178
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
+++MG + RD V RA+ A++NNPERAVEYL +GIP + E A N Q +P
Sbjct: 179 MVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDESLFNAGDETNNQNPRAPGS 235
Query: 226 MP--QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQA 283
P +P P SS P +FLR+ PQF +R+++
Sbjct: 236 QPISEPAVDLPAQSSDP------------------------FEFLRSQPQFLQMRSLIYQ 271
Query: 284 NPQLF 288
NP L
Sbjct: 272 NPHLL 276
>gi|195354361|ref|XP_002043666.1| GM26792 [Drosophila sechellia]
gi|194128854|gb|EDW50897.1| GM26792 [Drosophila sechellia]
Length = 414
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 139/292 (47%), Gaps = 33/292 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E PE TV ++K KI +GS+ Y A +Q LIY G +L DD T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGSE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 62 ENKVAENSFVVIMLTK-----NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
V E F+V+MLT+ N+ + T + S P A + +P
Sbjct: 60 SYNVDEKKFIVVMLTRDSSYSNRNQLSVKESDKLTSTDDSRHSMPCEEANHSNSPSCRNT 119
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+ + P P+ + ++ S + A SNL+ G+ + +++MG + R
Sbjct: 120 DDSVLSRETRPLPSDELIGELAQAS---LQSRAESNLLMGDEYNQTVLSMVEMG---YPR 173
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V RA+ A+YNNPERAVEYL +GIP + G ++ N P+ +P Q A T
Sbjct: 174 EQVERAMAASYNNPERAVEYLINGIP----AEEGTFYNGLNESTN-PSLIPSGPQTASAT 228
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
S+ P D + + +FLR+ PQF +R+++ NP L
Sbjct: 229 ST---ERPAD-------------SNSDPFEFLRSQPQFLQMRSLIYQNPHLL 264
>gi|164660784|ref|XP_001731515.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
gi|159105415|gb|EDP44301.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
Length = 406
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 137/262 (52%), Gaps = 51/262 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VK+L G +F ++V+P D+V VK KI+ QG +PA Q LIY GK+L D+ +
Sbjct: 1 MKLLVKSLAGGNFHIDVEPSDSVGSVKQKIQASQG---HPAENQKLIYSGKILADEKNMG 57
Query: 62 ENKVAENSFVVIMLTKNK-------RP------------------TGEGSTRSTAPTKAP 96
E ++ E F+V+M++K K +P TGE S S P K
Sbjct: 58 EYEIKEKDFLVVMVSKPKAKKVESDKPVSADSSAQAAPAPASAAATGE-SALSATPAKPK 116
Query: 97 QSSAPTPAA-TPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVA 155
S TPAA TPA A A + TPAP+ P +AS S+ S + S ++
Sbjct: 117 AESPATPAASTPAEAA-GASSSNLPSTPAPSNGPTNASGSTGSLQTGS---------FLS 166
Query: 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPG 215
G LE A+ I++MG + ++ V RA+R ++NNP+RAVEYL +G+P++ P +R G
Sbjct: 167 GAELETAVSSIIEMG---FSKEDVQRAMRMSFNNPDRAVEYLMNGLPDETAAAP-SRTTG 222
Query: 216 NGQAANSPTQMPQPTQPAPVTS 237
+P+ PAPVTS
Sbjct: 223 VPATPATPS-------PAPVTS 237
>gi|194771119|ref|XP_001967622.1| GF19257 [Drosophila ananassae]
gi|190614417|gb|EDV29941.1| GF19257 [Drosophila ananassae]
Length = 405
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 143/306 (46%), Gaps = 61/306 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E + E TVF++K KI V+GS+ Y +Q LIY G +L DD T+
Sbjct: 1 MIITIKNLQQQTFTIEFEAEKTVFELKKKIFDVRGSE-YIVEKQKLIYAGVILVDDHTIS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
V E F+V+MLT R TA SS A Q + ++T+P
Sbjct: 60 SYNVDEKKFIVVMLT-----------RDTA------SSTCQSRIKEADNAQNRLCLNTQP 102
Query: 122 TPAPTPAPASASVSS------VSATSES-------------GVYGHAASNLVAGNNLEGA 162
P+ + + S +SAT+E+ + A SNL+ G+
Sbjct: 103 LPSEITSNSDTFCGSTNQPIIISATNETKQRNDLVGELENVSLQSRAESNLLMGDEYTQT 162
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+Q +++MG + R+ V RA+ A++NNPERAVEYL +G+P AE + +
Sbjct: 163 VQSLIEMG---YPREQVERAMSASFNNPERAVEYLINGLP--AEDENIFHVD-------- 209
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
+ T P+ V S N + L S + + +FLR+ PQF +R+++
Sbjct: 210 ----EESTNPSLVQSGPQNIS-------ALSTGHSTGSSSDPFEFLRSQPQFLQMRSLIY 258
Query: 283 ANPQLF 288
NP L
Sbjct: 259 QNPHLL 264
>gi|145351567|ref|XP_001420144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580377|gb|ABO98437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 143/288 (49%), Gaps = 40/288 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL FD+E+ V VK ++ QG Y +L+++G VLKD+ T+
Sbjct: 1 MKVQFKTLTNQKFDLELDEGADVATVKAEVRKAQG---YGDEAIVLVHKGSVLKDEATIA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
V E SFVV+M+ + P+++A AA T + E
Sbjct: 58 SAGVTEESFVVVMV------------------QKPKAAAKPKAAAAKPPTPTPAAAAPEA 99
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A +S + +A + S LV+G LE A+ QI+ MG ++R+ V+
Sbjct: 100 AAPVAAATPESSAPTPAAATAVPAAAGGDSGLVSGAELEAAVTQIMTMG---FEREQVMN 156
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+NNP+RAVEYL +GIPE ++ +P P AP S+
Sbjct: 157 AMRAAFNNPDRAVEYLLTGIPETSQ---------------APPAAAAPAADAPDASAALG 201
Query: 242 ANPLDLFPQGLPDVGSGAAGAGS-LDFLRNSPQFQVLRAMVQANPQLF 288
N L+LFP+G+PD+ +G G LDFLR++PQFQ +RAMVQ P +
Sbjct: 202 GNALNLFPEGIPDMAGDRSGDGQMLDFLRDNPQFQAIRAMVQGQPHIL 249
>gi|430811680|emb|CCJ30877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1394
Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats.
Identities = 98/300 (32%), Positives = 152/300 (50%), Gaps = 44/300 (14%)
Query: 2 MKIFVKTLKGTSFDVE-VKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
MK+ K LK F ++ V P T+ VK I+ VQG D+ Q LIY GK+L D T+
Sbjct: 1040 MKLTFKDLKQQKFTIDNVDPRCTILQVKEMIQEVQGHDL---KHQKLIYSGKILLDSNTV 1096
Query: 61 EENKVAENSFVVIMLTKNKR-PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E + E F+V M+ K K+ P+ ST T S P A+AP+T++P
Sbjct: 1097 ESYDIKEKDFIVCMVQKPKQVPSASIVAESTVST---NQSDPK-----ASAPETSLP--- 1145
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
S +SVS++SE+ + ++LV G + AI+ +++MG ++R V
Sbjct: 1146 -----------SVPGTSVSSSSETF---NDPNSLVVGLLCDTAIKNMMEMG---YERTQV 1188
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RAA+NNP+RAVEYL +GIPE + + ++ + Q + + + P ++
Sbjct: 1189 ENAMRAAFNNPDRAVEYLLTGIPEHLSRELLQQSSSSQQVSRAQQIVQSTPTSTPTSTPS 1248
Query: 240 PNANPLDLFP----QGLPDVGS-------GAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
+ N +L QG + + G+ A SL FLRN+PQF +LR +VQ PQ+
Sbjct: 1249 RSENLFELAAQVSQQGRERLNTSSGNSLMGSNNAESLAFLRNNPQFLMLRRLVQTQPQML 1308
>gi|395513058|ref|XP_003760747.1| PREDICTED: UV excision repair protein RAD23 homolog A [Sarcophilus
harrisii]
Length = 404
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 134/274 (48%), Gaps = 63/274 (22%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P + Q LIY GK+L DD + + K+ E +FVV+M+TK K
Sbjct: 66 LKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYKIDEKNFVVVMVTKAK-----AG 120
Query: 87 TRSTAPTKAPQSSAPTPAATPATAPQ-------TAVPI-----STEPTPAPTPA---PAS 131
++AP+ + SAP A T + A+P+ S E PA PA P
Sbjct: 121 LATSAPS---EPSAPAAANTLEPSTPTPPAPAIVAMPLPPPAPSEEQKPAEEPAAGTPPE 177
Query: 132 ASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPE 191
A S+ ++ SG AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP
Sbjct: 178 AGSGSLPSSGSSGQEDDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPH 234
Query: 192 RAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ-PTQPAPVTSSGPNANPLDLFPQ 250
RAVEYL +GI PG+ + + P Q Q P QPAP
Sbjct: 235 RAVEYLLTGI------------PGSPEPESGPVQESQAPEQPAP---------------- 266
Query: 251 GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
G L+FLR+ PQFQ +R ++Q N
Sbjct: 267 --------EGGENPLEFLRDQPQFQNMRQVIQQN 292
>gi|332025640|gb|EGI65802.1| UV excision repair protein RAD23-like protein B [Acromyrmex
echinatior]
Length = 360
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 132/289 (45%), Gaps = 58/289 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E+ TV D+K KIET +G +PA Q LIY GK+L D+ L
Sbjct: 1 MIITLKNLQQQTFTIEIDSLQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + E F+V+M+TK K G+T T+ + + + + AT T+P
Sbjct: 58 EYNIDEKKFIVVMVTKPKT----GATPKTSEEQRTEGDKKEESTSSAT---------TQP 104
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAA--SNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ P + + S+V + S L+ G + + I+DMG ++R+ V
Sbjct: 105 SSNPNVQDTTRAASNVQEQPVAAAPAAGQAESALLMGEDYNTMVNNIMDMG---YEREQV 161
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V+ALRA++NNP+RAVEYL +GIP Q P P + +Q P
Sbjct: 162 VQALRASFNNPDRAVEYLITGIPAQLFEDPPEDPPEAQEQLQDQSQDP------------ 209
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
L FLR PQFQ +R ++Q NPQL
Sbjct: 210 -------------------------LAFLRLQPQFQQMRQVIQQNPQLL 233
>gi|321479297|gb|EFX90253.1| hypothetical protein DAPPUDRAFT_299929 [Daphnia pulex]
Length = 381
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 138/290 (47%), Gaps = 38/290 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + KTL+ T+F +E+ P TV +K KIE +G D YPA Q LIY GK+L D + L
Sbjct: 1 MLVTFKTLQNTTFQIEIDPSSTVKTLKEKIEKEKGVD-YPAVGQKLIYAGKILDDVSVLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E+ + E F+VIM+TK P +T Q +A A + +
Sbjct: 60 EHGIDEKKFIVIMVTK---PKASEPATTTPAETTTQPAATPAPVVVPAAAPAPTLATPQ- 115
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
ASVS+ +ES L+ G++ +Q I+DMG + RD V R
Sbjct: 116 --------GDASVSTGLLAAESA--------LIVGDDYNQMVQNIMDMG---YPRDQVER 156
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN---GQAANSPTQMPQPTQPAPVTSS 238
ALRA++NNP+RAVEYL +GIP++A+V A G +AA + A ++
Sbjct: 157 ALRASFNNPDRAVEYLLTGIPDRADVGEGAPGGGGQGPDEAALEFILGGRGQSEAALSME 216
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
G +L P G L FLR+ PQF +R +VQ NP L
Sbjct: 217 GEGEEGDELAP-----------GEDPLAFLRSQPQFAQMRQVVQQNPSLL 255
>gi|24638591|ref|NP_651918.2| Rad23, isoform A [Drosophila melanogaster]
gi|442614351|ref|NP_001259052.1| Rad23, isoform C [Drosophila melanogaster]
gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster]
gi|7304320|gb|AAF59352.1| Rad23, isoform A [Drosophila melanogaster]
gi|220942642|gb|ACL83864.1| Rad23-PA [synthetic construct]
gi|440218136|gb|AGB96542.1| Rad23, isoform C [Drosophila melanogaster]
Length = 414
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 137/292 (46%), Gaps = 33/292 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 62 ENKVAENSFVVIMLTK-----NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
V E F+V+MLT+ N+ + T + S P A +P +
Sbjct: 60 SYNVDEKKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSST-- 117
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+TE + +S + +++ + A SNL+ G+ + +++MG + R
Sbjct: 118 -NTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG---YPR 173
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V RA+ A+YNNPERAVEYL +GIP + + +P+ +P QPA T
Sbjct: 174 EQVERAMAASYNNPERAVEYLINGIPAEE-----GTFYNRLNESTNPSLIPSGPQPASAT 228
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
S+ S + + +FLR+ PQF +R+++ NP L
Sbjct: 229 SAE----------------RSTESNSDPFEFLRSQPQFLQMRSLIYQNPHLL 264
>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster]
Length = 414
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 137/292 (46%), Gaps = 33/292 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 62 ENKVAENSFVVIMLTK-----NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
V E F+V+MLT+ N+ + T + S P A +P +
Sbjct: 60 SYNVDEKKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSST-- 117
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+TE + +S + +++ + A SNL+ G+ + +++MG + R
Sbjct: 118 -NTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG---YPR 173
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V RA+ A+YNNPERAVEYL +GIP + + +P+ +P QPA T
Sbjct: 174 EQVERAMAASYNNPERAVEYLINGIPAEE-----GTFYNRLNESTNPSLIPSGPQPASAT 228
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
S+ S + + +FLR+ PQF +R+++ NP L
Sbjct: 229 SAE----------------RSTESNSDPFEFLRSQPQFLQMRSLIYQNPHLL 264
>gi|218190702|gb|EEC73129.1| hypothetical protein OsI_07141 [Oryza sativa Indica Group]
Length = 242
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 63/73 (86%)
Query: 141 SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200
+E+ +YG AASNLVAG+NLEG +Q IL+MGGG WDRDTV+RAL AAYNNPERAVEYLY+G
Sbjct: 156 TEADIYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTG 215
Query: 201 IPEQAEVQPVARA 213
+PEQAE V +A
Sbjct: 216 LPEQAEASAVVQA 228
>gi|255080554|ref|XP_002503857.1| predicted protein [Micromonas sp. RCC299]
gi|226519124|gb|ACO65115.1| predicted protein [Micromonas sp. RCC299]
Length = 374
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 137/293 (46%), Gaps = 33/293 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL F+ + + ++ DV+ K+ Q PA + +LI++GKVL DD TL
Sbjct: 1 MKVAFKTLTNQKFEEDFADDASIGDVRAKLSETQK---IPAPEMVLIHKGKVLTDDATLA 57
Query: 62 ENKVAENSFVVIM---LTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
V E SF+V+M K + A AP + A AT A S
Sbjct: 58 AAGVTEASFIVMMHQKPKAPKPAPPPPVPKPAAAAPAPAPATTPEAPAAATPETPAATPS 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
TEP PA TP +S LV G L+ I ++ MG ++RD
Sbjct: 118 TEPAPAGTPTDSS---------------------LVTGAALQETINNMMSMG---FERDA 153
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
VRALRAA+NNP+RAVEYL +GIPE AP A +
Sbjct: 154 CVRALRAAFNNPDRAVEYLLTGIPENLMPPAAPAAPAAAAPAAAAPAAAAAAAATAPGGP 213
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGS---LDFLRNSPQFQVLRAMVQANPQLF 288
GPN PL+LFP+G G G G LDFLR +PQFQ +RAMVQ NPQ+
Sbjct: 214 GPNTQPLNLFPEGGVPGGGGGGGGEGSGILDFLRENPQFQAIRAMVQGNPQIL 266
>gi|443714722|gb|ELU07000.1| hypothetical protein CAPTEDRAFT_148202, partial [Capitella teleta]
Length = 320
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 121/228 (53%), Gaps = 39/228 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F +E++ + V +K +I +G D Y A Q LIY GK+L D +
Sbjct: 1 MIITLKTLQQQTFKIEIEESEKVLALKERIAQEKGGD-YAADNQKLIYAGKILDDKQCIS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQS---SAPTPAATPATAPQTAVPIS 118
E K+ E++FVVIM+TK K AP KAP++ PTP+ AT + +
Sbjct: 60 EYKIQESNFVVIMVTKAK---------PKAPEKAPEAKPAEQPTPSQPAATPAAASSEPA 110
Query: 119 TEPTPAP-------TPAPASASVSSVSATSESGVY----------------GHAASNLVA 155
PT P +PAPA+A+ S+ +S + A S LV
Sbjct: 111 ATPTETPAAVDQPMSPAPAAATTESMETSSPATEVVTEATPADAPPAAVQPESAESTLVT 170
Query: 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
G + E +Q+++ MG + RD VVRALRA++NNP+RAVEYL SGIP+
Sbjct: 171 GESYEQTVQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPD 215
>gi|358346473|ref|XP_003637292.1| RAD23 protein [Medicago truncatula]
gi|355503227|gb|AES84430.1| RAD23 protein [Medicago truncatula]
Length = 213
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/135 (52%), Positives = 87/135 (64%), Gaps = 20/135 (14%)
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP- 227
MGGG+WDRDTV RALRAA+NNPERAV+YLYSGIPE A + A Q P
Sbjct: 1 MGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAA------------EVAVPAAQYPS 48
Query: 228 QPTQPAPVTS----SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQA 283
PT+ VT+ PN++PL++FPQ + AGAGSLDFLRN+PQFQ LR MVQ+
Sbjct: 49 NPTETGGVTTGVVPGVPNSSPLNMFPQ--ETISGAGAGAGSLDFLRNNPQFQALRTMVQS 106
Query: 284 NPQLF-PCFKSWGNK 297
NPQ+ P + G +
Sbjct: 107 NPQILQPVLQELGKQ 121
>gi|328861399|gb|EGG10502.1| hypothetical protein MELLADRAFT_93497 [Melampsora larici-populina
98AG31]
Length = 416
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 156/312 (50%), Gaps = 32/312 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL+ F ++V+P T+ ++K++I+ QG + Q +I+ GK+L D+ +
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSITIANLKLQIKESQG---FEPELQKIIFSGKILSDEKLIS 57
Query: 62 ENKVAENSFVVIMLTKNKR-PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST- 119
+ +V E F VIML K K PT + S A + +SAP +TPA P T+ P +
Sbjct: 58 DIEVKEKDFFVIMLMKPKTAPTVPAPSTSAAAVPS-STSAPVQTSTPAAPPATSTPSANP 116
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
E TPA T P +A SS A + G + G+ L+ I +I++ G + R+ V
Sbjct: 117 ESTPATTTEPQAAVDSSTPAVAP----GTQDPGFLTGSGLQTTIDEIVN--GMGFPREEV 170
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ---PAPVT 236
V+A+RAA+NNP+RAVEYL +GIP + P + AP G + P P PAPV
Sbjct: 171 VKAMRAAFNNPDRAVEYLMTGIPAGLDALPPSAAPRAGAPTPATATAPTPGANAVPAPVA 230
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGS-----------------LDFLRNSPQFQVLRA 279
+ + N + Q + AA A L+ LRN+PQ LR
Sbjct: 231 PTTASRNLFEAAAQHVAQQRQPAAAATPAAAPAGAAGATANTSRVLESLRNNPQMVQLRQ 290
Query: 280 MVQANPQLFPCF 291
+VQ NPQL F
Sbjct: 291 LVQTNPQLLQPF 302
>gi|393911377|gb|EFO15597.2| UV excision repair protein Rad23 [Loa loa]
Length = 337
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 132/291 (45%), Gaps = 77/291 (26%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I KT+ SF++E+ P T+ +VK KI +G YP Q LIY GKVL D T+E
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPIECQKLIYNGKVLDDAQTVE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + + FVVIM+ + K+P G ATPA + P
Sbjct: 61 EVMIDPSKFVVIMIAR-KKPVG---------------------ATPA---------ESTP 89
Query: 122 TPAPTPAPASASVSSV---SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P+ PA+A V++V S T S + L E Q I+ MG + RD
Sbjct: 90 QPSNLQIPAAAQVTTVTPASVTDNSPAAPQNSDGLTPEQ--EETAQAIVAMG---YSRDK 144
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V+RALRA++ N +RAVEYL SGIPE+ ++ G+ ++A
Sbjct: 145 VIRALRASFFNGDRAVEYLCSGIPEEEDL------GGHQESAEH---------------- 182
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
+ G G G LDFLR PQF+ LR +VQ+NP L P
Sbjct: 183 ---------------EEGERGQGLG-LDFLRQLPQFEQLRELVQSNPALLP 217
>gi|195064359|ref|XP_001996553.1| GH23932 [Drosophila grimshawi]
gi|193892099|gb|EDV90965.1| GH23932 [Drosophila grimshawi]
Length = 470
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 142/332 (42%), Gaps = 72/332 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VK L+ +F ++ PE TV D+K I +G++ Y +Q LIY G +L D+ T+
Sbjct: 1 MIITVKNLQQQTFSIDFDPEKTVLDLKKTIFNERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRST------APTKAPQSSAPTPAATPATAPQTAV 115
KV E F+V+MLT++ TG GS +T A K Q + P A A + A
Sbjct: 60 SYKVDEKKFIVVMLTRDISVTGSGSITNTTDAVASAQRKTQQETTAQPKAAAAESKAEAK 119
Query: 116 PIS--------------------TEP------------TPAPTPAPASASVSSVSATSES 143
P S EP T A +S+ V + +
Sbjct: 120 PTSKSNAVAEGTTKTNKTTNESIVEPASTAAVAGAARATDVDVTASDYSSIDLVGELANA 179
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
+ A SNL+ G + +++MG + RD V RA+ A++NNPERAVEYL +GIP+
Sbjct: 180 SLQTRAESNLLMGEEYNRTVASMIEMG---YARDQVERAMSASFNNPERAVEYLITGIPQ 236
Query: 204 QAEV-------QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVG 256
+ + + VARA G A + +A+P
Sbjct: 237 EESLFNAGHDDEDVARA---GSLLQQQVGGGGDGGSASDLQTDSSADP------------ 281
Query: 257 SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
+FLR+ PQF +R+++ NP L
Sbjct: 282 --------FEFLRSQPQFLQMRSLIYQNPHLL 305
>gi|297721185|ref|NP_001172955.1| Os02g0465112 [Oryza sativa Japonica Group]
gi|255670888|dbj|BAH91684.1| Os02g0465112, partial [Oryza sativa Japonica Group]
Length = 92
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%)
Query: 138 SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYL 197
S ++E+ +YG AASNLVAG+NLEG +Q IL+MGGG WDRDTV+RAL AAYNNPERAVEYL
Sbjct: 3 STSTEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYL 62
Query: 198 YSGIPEQAEVQPVARA 213
Y+G+P QAE V +A
Sbjct: 63 YTGLPGQAEASAVVQA 78
>gi|297286975|ref|XP_001085658.2| PREDICTED: UV excision repair protein RAD23 homolog B [Macaca
mulatta]
Length = 406
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 157/327 (48%), Gaps = 62/327 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ SF +++ PE+TV +K KIE+ + + P A Q LIY G++L DD L+
Sbjct: 1 MQVTLKTLQPQSFKIDIDPEETVKALKEKIESEKAKEASPVAGQKLIYAGEILNDDAALK 60
Query: 62 ENKVAENSFVV--IMLTKNKRPT--GEGSTRSTAP---------TKAPQSSAPTPAA--- 105
E K+ E FVV +M+TK K + +T+ +AP T + APTP
Sbjct: 61 EYKIDEKIFVVVMVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVLALA 120
Query: 106 ---TPATAPQTAVPISTEPTPA-----------PTPAPASASVSSVSAT----SESGVYG 147
TPA +V +S+EP PA P P + ++S T S S ++
Sbjct: 121 TTFTPAFITPVSVTVSSEPAPASATKQKKAAEKPAETPVATRLTSTDCTLXDSSWSNLFE 180
Query: 148 HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP---EQ 204
A S LV G E + +I MG ++ + V+ A RA++ N +RAVE L GIP Q
Sbjct: 181 DATSALVTGQPYENMVTEITPMG---YEXEQVIAAPRASFKNLDRAVECLVMGIPGVKXQ 237
Query: 205 AEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS 264
V P QAA+ T +PQ + A V ++ + ++G
Sbjct: 238 VVVDP-------HQAAS--TGVPQSSTLAAVAATTTATT-------------TTSSGXHP 275
Query: 265 LDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FL N PQFQ +R ++Q N L P
Sbjct: 276 LEFLWNQPQFQQMRQIIQQNTSLLPAL 302
>gi|194913607|ref|XP_001982736.1| GG16385 [Drosophila erecta]
gi|190647952|gb|EDV45255.1| GG16385 [Drosophila erecta]
Length = 414
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 142/292 (48%), Gaps = 33/292 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T++
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVD 59
Query: 62 ENKVAENSFVVIMLTKNKRPTG--EGSTRST---APTKAPQSSAPTPAATPATAPQTAVP 116
V + F+V+MLT++ + + S + + T + S P A + +P T
Sbjct: 60 SYNVDDKKFIVVMLTRDSSSSNPNQLSVKESDKLISTDDSKDSMPGEEANHSNSPCTK-- 117
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+TE + P+ ++ + + +++ + A SNL+ G + +++MG + R
Sbjct: 118 -NTEESVLPSETTPLSTDNLIGDLAQASLQSRAESNLLMGEEYNQTVLSMVEMG---YPR 173
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V RA+ A+YNNPERAVEYL +GIPE+ G N + P+ V
Sbjct: 174 EEVERAMAASYNNPERAVEYLINGIPEE-----------EGTIDNGVNESTNPS----VI 218
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
+SGP + + + +FLR PQF +R+++ NP L
Sbjct: 219 ASGPQTVSASSVER------PAESNSDPFEFLRRQPQFLQMRSLIYQNPHLL 264
>gi|91085045|ref|XP_974357.1| PREDICTED: similar to putative RAD23-like B [Tribolium castaneum]
gi|270009030|gb|EFA05478.1| hypothetical protein TcasGA2_TC015662 [Tribolium castaneum]
Length = 334
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 137/287 (47%), Gaps = 65/287 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI V+ L +F + ++P TV D+K +IE +G D Y Q LIY+GK+LKD+ L
Sbjct: 1 MKITVRNLYQKNFIIHIEPSKTVKDLKQQIEAEKGKD-YRWDYQRLIYRGKILKDEAPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + E+ F+VIM++K T E ++ A Q SA AA AP
Sbjct: 60 EYNIDEDKFIVIMVSKPDSGTTE--VANSGDNSATQPSATPAAAPAPAAPAAPA------ 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A S++S+ +ES L+ G E +Q I+DMG + RD V +
Sbjct: 112 --------PVAPASNLSSEAESA--------LLMGEEYENMVQNIVDMG---YPRDQVEQ 152
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRA+YNNP+RAVEYL +GIP A G Q A AP S
Sbjct: 153 ALRASYNNPDRAVEYLINGIP----------AMGEDQEA------------APSMS---- 186
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
G+ + S A+ L FLR+ PQFQ ++ +VQ NPQL
Sbjct: 187 ---------GIDERQSDASDP--LAFLRSQPQFQQMKQVVQQNPQLL 222
>gi|432871920|ref|XP_004072043.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 421
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 114/219 (52%), Gaps = 35/219 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +E+ PE TV +K KIE +G D +P + Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNK-----------------RPTGEGSTRSTAPTKAPQSSAPTPA 104
+ K+ E +FVV+M++K K + +G ST + +
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAATTSAPAPEAPKPPAQDSGSTSTAAPPSNPPAAPTPAAVP 120
Query: 105 ATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYG-HAASNLVAGNNLEGAI 163
P A Q +TEP PAS+S G G A+S LV G E +
Sbjct: 121 IPPEEAKQEQSAEATEPQ-----QPASSS---------GGNQGLDASSALVTGAEYEAML 166
Query: 164 QQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
+I+ MG ++R+ VV ALRA++NNP RAVEYL +GIP
Sbjct: 167 TEIMSMG---YERERVVAALRASFNNPHRAVEYLLTGIP 202
>gi|344228919|gb|EGV60805.1| hypothetical protein CANTEDRAFT_137273 [Candida tenuis ATCC 10573]
gi|344228920|gb|EGV60806.1| UV excision repair protein Rad23 [Candida tenuis ATCC 10573]
Length = 356
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 140/295 (47%), Gaps = 47/295 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I K K ++V+ +DTV K + + + DV +Q +Y GKVL DD +L
Sbjct: 1 MQITFKDFKKQKLTIDVEVDDTVLKTKETVASQKSCDV---SQLKFVYSGKVLADDQSLG 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E ++ M++K K+P P + PT AAT + ++A ++EP
Sbjct: 58 SYKIKEGDSIIYMISKAKKPV------------VPVAEPPT-AATTGDSSESA---ASEP 101
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
APTP SAT+ + V A S G+ E IQ I++MG +DRD V +
Sbjct: 102 V-APTP----------SATTVAPVSEEAGSAFAQGSEREATIQNIMEMG---YDRDQVEQ 147
Query: 182 ALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
ALRAA+NNP RAVEYL +GIPE Q V+P + A + Q + +S
Sbjct: 148 ALRAAFNNPHRAVEYLLTGIPESLQQPVEPPTAVEEDVDATPVAAETTQDDKDHDHDTSD 207
Query: 240 PNANPLDLFP----QGLPDVGSGAAG--AGSLDFLRNSPQFQVLRAMVQANPQLF 288
N N LF G G A G LD ++ Q Q+LR +Q NP+L
Sbjct: 208 RNVN---LFEAAAAANNASAGEGDASDPVGELD---DAAQLQLLREAIQTNPELI 256
>gi|47496878|dbj|BAD19842.1| RAD23 protein-like [Oryza sativa Japonica Group]
Length = 110
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 62/73 (84%)
Query: 141 SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200
+E+ +YG AASNLVAG+NLEG +Q IL+MGGG WDRDTV+RAL AAYNNPERAVEYLY+G
Sbjct: 24 TEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTG 83
Query: 201 IPEQAEVQPVARA 213
+P QAE V +A
Sbjct: 84 LPGQAEASAVVQA 96
>gi|170590706|ref|XP_001900112.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
gi|158592262|gb|EDP30862.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
Length = 354
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 130/291 (44%), Gaps = 77/291 (26%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+M + KT+ SF++E+ P T+ +VK KI +G YP Q LIY GKVL D T+
Sbjct: 22 VMLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTV 81
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA--ATPATAPQTAVPIS 118
EE + + FVV+M+ + K+P G AP S P P+ PA A T P+S
Sbjct: 82 EEVMIDPSKFVVVMIAR-KKPIG-----------APVESTPQPSNLQIPAGAQVTTAPVS 129
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
+ TP T+ Q I+ MG + RD
Sbjct: 130 VADSGPSTPQNPDDLTPEQEETA----------------------QAIVAMG---YPRDK 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V+RALRA++ N +RAVEYL SGIPE+ ++ G+ ++A
Sbjct: 165 VIRALRASFFNGDRAVEYLCSGIPEEEDL------GGHQESAEH---------------- 202
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
+ G A G G LDFLR PQF+ LR +VQ+NP + P
Sbjct: 203 ---------------EEGERAQGLG-LDFLRQLPQFEQLRELVQSNPAILP 237
>gi|448512641|ref|XP_003866779.1| Rad23 protein [Candida orthopsilosis Co 90-125]
gi|380351117|emb|CCG21340.1| Rad23 protein [Candida orthopsilosis Co 90-125]
Length = 402
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 111/206 (53%), Gaps = 20/206 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K K + +EV+ DTV K K+ Q D ++Q L+Y GKVL+DD TLE
Sbjct: 1 MKIIFKDFKKQTIPIEVELTDTVSSAKDKL--AQEKDCV-SSQIKLVYSGKVLQDDKTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPA--TAPQTAV-PIS 118
E K+ E + ++ M++K K PT P SS P AT + T T V P
Sbjct: 58 ECKLKEGASIIFMISKAKE----------TPTPVPGSSVPATEATASASTGDSTKVEPAG 107
Query: 119 TEPT-PAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
+ PT PAP A+ + + ++TS +G + S G+ E IQ I++MG ++R
Sbjct: 108 STPTAPAPASETATNAEGATASTSSTGPAETSESTFALGSERETTIQNIMEMG---YERP 164
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPE 203
V ALRAA+NNP RAVEYL SGIPE
Sbjct: 165 QVEAALRAAFNNPHRAVEYLISGIPE 190
>gi|312095801|ref|XP_003148472.1| UV excision repair protein Rad23 containing protein [Loa loa]
Length = 341
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 138/299 (46%), Gaps = 79/299 (26%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVF-----------DVKMKIETVQGSDVYPAAQQMLIYQ 50
M I KT+ SF++E+ P TV+ +VK KI +G YP Q LIY
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTVYFWSNVVLPKIGEVKAKIAEEKGEVEYPIECQKLIYN 60
Query: 51 GKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATA 110
GKVL D T+EE + + FVVIM+ + K+P G ST PQ P+ PA A
Sbjct: 61 GKVLDDAQTVEEVMIDPSKFVVIMIAR-KKPVGATPAEST-----PQ---PSNLQIPAAA 111
Query: 111 PQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
T V PAS + +S +A SG+ S+ + E A Q I+ MG
Sbjct: 112 QVTTV------------TPASVTDNSPAAPQNSGI-----SDGLTPEQEETA-QAIVAMG 153
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT 230
+ RD V+RALRA++ N +RAVEYL SGIPE+ ++ G+ ++A
Sbjct: 154 ---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL------GGHQESAEH-------- 196
Query: 231 QPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
+ G G G LDFLR PQF+ LR +VQ+NP L P
Sbjct: 197 -----------------------EEGERGQGLG-LDFLRQLPQFEQLRELVQSNPALLP 231
>gi|222622818|gb|EEE56950.1| hypothetical protein OsJ_06656 [Oryza sativa Japonica Group]
Length = 242
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 62/73 (84%)
Query: 141 SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200
+E+ +YG AASNLVAG+NLEG +Q IL+MGGG WDRDTV+RAL AAYNNPERAVEYLY+G
Sbjct: 156 TEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTG 215
Query: 201 IPEQAEVQPVARA 213
+P QAE V +A
Sbjct: 216 LPGQAEASAVVQA 228
>gi|357621015|gb|EHJ73001.1| nuclear excision repair protein rad23 [Danaus plexippus]
Length = 323
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 109/201 (54%), Gaps = 26/201 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +E+ P++TV +K+KIE +G D Y A Q LIY GK+L DD L
Sbjct: 1 MLLTLKTLQQQTFQIEIDPQETVKALKLKIEVEKGKD-YAADNQRLIYAGKILLDDNKLH 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+VIM+TK K + ++ ++AP A A+T + ++ V + +P
Sbjct: 60 TYNIDEKKFIVIMVTKPKTSDNQQASSTSAP------EAGESASTESGDGKSKV-VEEKP 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P P P AS V++ + E +Q I+DMG ++R V +
Sbjct: 113 KPQPAAEPERASEPPVTSNEP---------------DFESTVQSIMDMG---YNRQQVEQ 154
Query: 182 ALRAAYNNPERAVEYLYSGIP 202
ALRA++NN ERAVEYL +GIP
Sbjct: 155 ALRASFNNRERAVEYLITGIP 175
>gi|392569695|gb|EIW62868.1| UV excision repair protein Rad23 [Trametes versicolor FP-101664
SS1]
Length = 388
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 113/212 (53%), Gaps = 36/212 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTL+ F +E + DTV D+K KI+ QG V Q LIY GKVL D ++E
Sbjct: 1 MKITVKTLQQKVFQIEAEGTDTVADLKQKIQETQGHGV---DSQKLIYSGKVLPDSKSIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTG-----------EGSTRSTAPTKAPQSSAPTPAATPATA 110
++ E F+V+M++K K PT + A A +SS P P A
Sbjct: 58 SCEIKEKDFLVLMVSKPK-PTAATAGASSSTPAASTAPPAAAAPAAESSIPAP-----VA 111
Query: 111 PQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
P TA P +P AP PA A+ + S + G L+G +Q +++MG
Sbjct: 112 PSTAAP---QPPNAPILTPAQAAPVAPS----------LGDGFLTGEALQGTVQNMIEMG 158
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
++R+ V+RALRA++NNPERAVEYL++GIP
Sbjct: 159 ---FEREQVMRALRASFNNPERAVEYLFNGIP 187
>gi|242015323|ref|XP_002428309.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
gi|212512899|gb|EEB15571.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
Length = 156
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 102/178 (57%), Gaps = 29/178 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP--TGE 84
+K KIE +G D YPA Q LIY GK+L D+T L E K+ E F+V+M+TK K P T
Sbjct: 4 LKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLSEYKIDEKKFIVVMVTKPKLPPATHA 62
Query: 85 GSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESG 144
GS+ ST PTP QT+ S EP PAS +V+S ++
Sbjct: 63 GSSDST----------PTPGTGDGGEKQTSDTTSNEP-------PASENVNSGAS----- 100
Query: 145 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
+G A S L+ G+ +++ I+DMG + ++ V RALRA++NNP+RAVEYL +GIP
Sbjct: 101 -FGQAESALLMGDEYNQSLRNIMDMG---YPKEQVERALRASFNNPDRAVEYLLNGIP 154
>gi|349803947|gb|AEQ17446.1| putative rad23b [Hymenochirus curtipes]
Length = 286
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 21/226 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G + +P A Q LIY GK+L DDT
Sbjct: 1 MQITLKTLQQQTFKIDIDSEETVKALKEKIELEKGKEAFPVAGQKLIYAGKILNDDTATA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
A + + P PT P + PT T TAP+ E
Sbjct: 61 APAPASPPLTYTPIARQNAP--------VLPT-VPAPAVPTSEPTTTTAPK-----EEEK 106
Query: 122 TPAP--TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
T +P T +P+S S S +S ++ A S LV G + E + +I+ MG ++R+ V
Sbjct: 107 TDSPPETMSPSSTECSVPSDSSRPSLFVDATSALVTGQSYENMVTEIMSMG---YEREQV 163
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
+ ALRA++NNP+RAVEYL GIP E Q VA P A++PTQ
Sbjct: 164 IAALRASFNNPDRAVEYLLVGIPGDREGQAVADPPQT--LASTPTQ 207
>gi|195402315|ref|XP_002059752.1| GJ16257 [Drosophila virilis]
gi|194155966|gb|EDW71150.1| GJ16257 [Drosophila virilis]
gi|263359664|gb|ACY70500.1| hypothetical protein DVIR88_6g0037 [Drosophila virilis]
Length = 448
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 150/327 (45%), Gaps = 72/327 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VK L+ +F ++ PE TV ++K +I +G++ Y +Q LIY G +L DD T+
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKRQIFNERGAE-YFVEKQKLIYAGVILTDDRTIN 59
Query: 62 ENKVAENSFVVIMLTKN----------------------KRPTGEGSTRST--------- 90
KV E F+V+MLT++ ++ E + RST
Sbjct: 60 SYKVDEKKFIVVMLTRDISGTSSGSSNNTNTEAVSSQQARKQAKETTERSTQDEPLVESK 119
Query: 91 -APTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPAS--------ASVSSVSATS 141
A SS+ A T + + + T A +PAPAS +S+ V +
Sbjct: 120 PAVQVKESSSSKKGAKTNKITSEAGEEVGS--TGAGSPAPASTTGSTTDYSSIDLVGELA 177
Query: 142 ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201
+ + A SNL+ G + +++MG + R+ V RA+ A++NNPERAVEYL +GI
Sbjct: 178 NTSLQTRAESNLLMGEEFNRTVASMVEMG---YPREQVERAMAASFNNPERAVEYLINGI 234
Query: 202 PEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAG 261
P++ + PG+ + ++ + + Q G ++ LP +
Sbjct: 235 PQEENL----FTPGDDEESSRASNIHQ----------GAASD--------LP----AESA 268
Query: 262 AGSLDFLRNSPQFQVLRAMVQANPQLF 288
A +FLR+ PQF +R+++ NP L
Sbjct: 269 ADPFEFLRSQPQFLQMRSLIYQNPHLL 295
>gi|322794461|gb|EFZ17533.1| hypothetical protein SINV_80108 [Solenopsis invicta]
Length = 376
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 127/285 (44%), Gaps = 54/285 (18%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
+ V+ G +F +E+ TV D+K KIE +G +PA Q LIY GK+L D+ L E
Sbjct: 18 LIVEDYAGQTFTIEIDSSQTVKDLKEKIEMQKG---FPAEHQKLIYAGKILADEQPLTEY 74
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E F+V+M+TK P + +++ +A ++ T P + + I
Sbjct: 75 NIDEKKFIVVMVTK---PKAGATPKTSEEQRAEGDKKEESTSSATTQPSSNLNIQD---- 127
Query: 124 APTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRAL 183
+AS + + G A S L+ G + + I+DMG ++R+ VV+AL
Sbjct: 128 ----TTRAASNVQEQPAAAAPAAGQAESALLMGEDYNTMVNNIMDMG---YEREQVVQAL 180
Query: 184 RAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNAN 243
RA++NNP+RAVEYL +GIP Q P P + +Q P
Sbjct: 181 RASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQSQDP---------------- 224
Query: 244 PLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
L FLR PQFQ +R ++Q NPQL
Sbjct: 225 ---------------------LAFLRLQPQFQQMRQVIQQNPQLL 248
>gi|402224231|gb|EJU04294.1| UV excision repair protein Rad23 [Dacryopinax sp. DJM-731 SS1]
Length = 411
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 11/203 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL+ F ++ +P DTV D+K +I Q +P QQ +IY GK+L D T+E
Sbjct: 1 MKLTFKTLQQKQFTLDAEPSDTVLDLKHRISQDQD---FPVEQQKIIYSGKILSDTQTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E F+V+M++K K +T+ T P+ + P + + + P +
Sbjct: 58 ACKIKEKDFLVVMVSKPK----AAPAATTSKTATPEPAKPVASTSSSAVPSEPAVVPAPA 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P PAP A+ +A + + +G S G L+GA++ +++MG ++R V+R
Sbjct: 114 EPVAAPAPVPAATEQPAAAAAAPAWGD-QSAFFTGAALQGAVENMMEMG---FERAQVMR 169
Query: 182 ALRAAYNNPERAVEYLYSGIPEQ 204
AL+AAYNNP+RAVEYL SGIP+
Sbjct: 170 ALKAAYNNPDRAVEYLMSGIPDH 192
>gi|19113023|ref|NP_596231.1| UV excision repair protein rhp23 [Schizosaccharomyces pombe 972h-]
gi|21542214|sp|O74803.1|RHP23_SCHPO RecName: Full=UV excision repair protein rhp23; AltName: Full=RAD23
homolog
gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe]
gi|3687502|emb|CAA21170.1| Rad23 homolog Rhp23 [Schizosaccharomyces pombe]
Length = 368
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 145/294 (49%), Gaps = 31/294 (10%)
Query: 2 MKIFVKTLKGTSFDV-EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M + K L+ F + +V + + ++K KI+T Q Y +Q LIY G++L DD T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQN---YEVERQKLIYSGRILADDKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + E F+V M++ RP ST +A + AP A P AP + V ST
Sbjct: 58 GEYNIKEQDFIVCMVS---RPKTSTSTPKSAASPAPNPPASVPEK-KVEAPSSTVAESTS 113
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T T A A+ S +ATSE+ + A+ L G A++ +++MG ++R V
Sbjct: 114 TTQ--TVAAAAPSNPDTTATSEAPI---DANTLAVGAQRNVAVENMVEMG---YERSEVE 165
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+NNP+RAVEYL +GIPE + + A ++ P TS+G
Sbjct: 166 RAMRAAFNNPDRAVEYLLTGIPEDILNRQREESAAALAAQQQQSEALAP------TSTG- 218
Query: 241 NANPLDLFPQGLPDVG------SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
P +LF Q S G L FLR+ PQFQ LR +VQ NPQ+
Sbjct: 219 --QPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQML 270
>gi|389611285|dbj|BAM19254.1| UV excision repair protein rad23 [Papilio polytes]
Length = 326
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 106/201 (52%), Gaps = 23/201 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ SF +E+ PE+TV +K+KIE +G D Y A Q LIY GK+L DD +
Sbjct: 1 MLVTLKTLQQLSFQIEIDPEETVKALKLKIEVEKGKD-YAADYQRLIYAGKILLDDNKIS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+VIM+TK K P++ SS TP A A +
Sbjct: 60 TYNIDEKKFIVIMVTKPK------------PSETQASSTSTPEAGECAASTVVGDSKDKS 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T TP P +A+ +A AA + A + E +Q I+DMG ++R V +
Sbjct: 108 TAEETPQPPTAAEPERTAEP-------AAPVISAELDFESTVQSIMDMG---YNRQQVEQ 157
Query: 182 ALRAAYNNPERAVEYLYSGIP 202
ALRA+++N ERAVEYL +GIP
Sbjct: 158 ALRASFSNRERAVEYLITGIP 178
>gi|356551713|ref|XP_003544218.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 254
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 87/141 (61%), Gaps = 12/141 (8%)
Query: 134 VSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERA 193
++ V+ T+ + YG ASN V G+NLE IQQI+DMGGG+WDRDTV ALRAA NNPE
Sbjct: 59 INFVNVTTNT--YGLTASNXVVGSNLEKTIQQIMDMGGGSWDRDTVSHALRAAXNNPEHV 116
Query: 194 VEYLYSGIPEQAEV-QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGL 252
V+YLYSGIPE E+ + P N T++ T A N++PL++FP+ +
Sbjct: 117 VDYLYSGIPEVVEIFMSIGPYP-----INQTTKIGGATARAVFGVH--NSSPLNMFPKEI 169
Query: 253 PDVGSGAAGAGSLDFLRNSPQ 273
G G AG G LDF RN+ Q
Sbjct: 170 I-CGVG-AGIGLLDFHRNNLQ 188
>gi|326469095|gb|EGD93104.1| UV excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 381
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 119/205 (58%), Gaps = 19/205 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++ +P D + DVK KI T +G +PA+QQ LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K S + + ++ P ++ PA +AP A ++E
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAP---SASAASSSQTPAAAPSAPAPVTPSAPSRANAAASE- 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TPA TP+PA + SG + S L+ GN + AI Q+L MG + R + R
Sbjct: 114 TPA-TPSPAGG--------ASSGATFNDPSALLMGNQGQEAITQMLAMG---FSRGDIDR 161
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAE 206
A+RAAY NP+RA+EYL +GIPE++E
Sbjct: 162 AMRAAYFNPDRAIEYLLNGIPEESE 186
>gi|195133968|ref|XP_002011410.1| GI14087 [Drosophila mojavensis]
gi|193912033|gb|EDW10900.1| GI14087 [Drosophila mojavensis]
Length = 442
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 143/320 (44%), Gaps = 66/320 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F ++ PE TV ++K +I +G++ Y +Q LIY G +L D+ T+
Sbjct: 1 MIITIKNLQQQTFAIDFDPEKTVLELKNQIFYERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 62 ENKVAENSFVVIMLTKN--------------KRPTGEGSTRSTAPTKAP----------- 96
KV E F+V+ML+++ K+P + +T K P
Sbjct: 60 SYKVDEKKFIVVMLSRDISGTSSNTNADGQRKQPNEQMEGSTTGIDKKPVLQNANASSAE 119
Query: 97 --------QSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
+S+ + + IST P P PA +S+ V + + +
Sbjct: 120 KGIINNNNRSNDVLGVEIERSGSSSQTQISTAP-EVPIPATDYSSIDLVGELANASLQSR 178
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A SNL+ G + +++MG + RD V RA+ A++NNPERAVEYL +GIP+ +
Sbjct: 179 AESNLLMGEEFNRTVASMVEMG---YPRDQVERAMAASFNNPERAVEYLINGIPQDENL- 234
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
PG+ + +P V +S GLP + A +FL
Sbjct: 235 ---FNPGDEE------------EPNRVETSHRQG--------GLP----AESAADPFEFL 267
Query: 269 RNSPQFQVLRAMVQANPQLF 288
R+ PQF +R+++ NP L
Sbjct: 268 RSQPQFLQMRSLIYQNPHLL 287
>gi|340384331|ref|XP_003390667.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 363
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 138/299 (46%), Gaps = 57/299 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VKTL+ +F +E++ +V D+K IE QG + +PAA Q LIY GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E++FVV+M++K K + + S+ T ATP
Sbjct: 60 DYSIQESNFVVVMVSKIKPAPAPTPKPQETSSTSSSSTPSTSGATPQP------------ 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
SS++ T + E + ++ MG + R+ VVR
Sbjct: 108 -------------SSITGT-----------------DYERTVNDMVGMG---FMRNDVVR 134
Query: 182 ALRAAYNNPERAVEYLYSGIP-----EQAEVQPVARAPGNGQA--ANSPTQMPQPTQPAP 234
AL+A+YNNP RA+EYL P E+AE QP G Q +SP Q P +PA
Sbjct: 135 ALQASYNNPTRAMEYLCGERPMPTLEEEAEPQPRGSGAGGQQVPLTSSPPQAPPTQRPAG 194
Query: 235 VT--SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
+ S+ P+A P PQG G G + + L L PQFQ LRA VQ NP L P
Sbjct: 195 QSQQSTPPSAAPRP--PQGGLSAGGGQSASNVLQGLSQLPQFQALRAAVQQNPGLLPSL 251
>gi|345327426|ref|XP_001507990.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 292
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 107/207 (51%), Gaps = 42/207 (20%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK------- 79
+K KIET +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct: 45 LKEKIETEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKATATPMP 104
Query: 80 -----------RPTGEGSTRSTAPTKAPQSS------APTPAATPATAPQTAVPISTEPT 122
+ S++++A T AP S PTPA PA T P +P
Sbjct: 105 SPVVGQQSNPATTSTVSSSKASAVTPAPTPSPVLAPVTPTPAGEPA---PTVAPKEEKPA 161
Query: 123 PAPTPAPASASVSSVSA------------TSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
P AP + S SS + S S ++ A S LV G + E + +I+ MG
Sbjct: 162 EKPVEAPVALSPSSSDSLTGDASGDASGDASRSNLFEDATSALVTGQSYENMVTEIMSMG 221
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYL 197
++R+ V+ ALRA++NNP+RAVEYL
Sbjct: 222 ---YEREQVIAALRASFNNPDRAVEYL 245
>gi|296418227|ref|XP_002838743.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634704|emb|CAZ82934.1| unnamed protein product [Tuber melanosporum]
Length = 385
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 147/289 (50%), Gaps = 37/289 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P DT+ VK KI +G D AA Q LIY GK+L+DD T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPTDTISQVKEKINKEKGWD---AAAQKLIYSGKILQDDKTVG 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ K+ E FVV M++ + +++ + A SSA TP P+T Q++VP P
Sbjct: 58 DYKIEEKGFVVCMISNKPK-------AASSSSAAGSSSASTPVKAPSTPAQSSVP----P 106
Query: 122 TP-APTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
TP AP A +S S+ +A E+ A N+ E AI ++ MG ++R +
Sbjct: 107 TPSAPAQAVTGSSTSTSAAVPETPTPAGAVGTTF--NDPEDAIVNMMGMG---FERSEIE 161
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARA----PGNGQAANSPTQMPQPTQPAPVT 236
RA+RAA+ NP+RAV+YL +GIPE + A++ P A ++ +
Sbjct: 162 RAMRAAFFNPDRAVDYLLNGIPEHLTQERPAQSSTTRPAAQSAQSAARPAAATAPATGGS 221
Query: 237 SSGPNANP--LDLFPQ---------GLPDVG--SGAAGAGSLDFLRNSP 272
+SG A P ++LF G G GAA G+LDFLRN+P
Sbjct: 222 ASGEGAEPENINLFEAAAAAASQRGGAHSQGRSGGAASLGNLDFLRNNP 270
>gi|406602239|emb|CCH46169.1| putative DNA repair protein RAD23-3 [Wickerhamomyces ciferrii]
Length = 394
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 149/330 (45%), Gaps = 61/330 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ K K +E++P +TV K K+ V+G +V Q +Y GKVL+DD T+E
Sbjct: 1 MQVIFKDFKKEKIPIELEPTETVLQAKEKLAQVKGVEV---KQLKFVYSGKVLQDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPI--ST 119
K+ + V+ M++K + PT A + P PAA P + P+ ST
Sbjct: 58 STKIKADDQVIFMISK---------VAAKKPTPAASTPTPAPAAQPTQPTAQSAPVQPST 108
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PAP P+ SA + ++G + AS G+ E AI I++MG ++R V
Sbjct: 109 RTVPAPAPSSQSAQPTPSQQPEQAGDFD--ASTFATGSAREKAIANIMEMG---YERPQV 163
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQP----------VARAPGNGQAANSPTQMPQP 229
+ALRAA+NNP+RAVEYL +GIPEQ + Q V + + +N+ QP
Sbjct: 164 EQALRAAFNNPDRAVEYLLTGIPEQFQQQAQQSQPQPPTAVEESGEQTEGSNTGATATQP 223
Query: 230 TQPAPVTSSGPNANPLDLFPQ------GLPDVGS---------GAAGAGSLDFLRN---- 270
+ P+ T A DLF G P GS GA G LD +R
Sbjct: 224 SAPSG-TEEHSTAESGDLFAAAAAAAGGNPGSGSSPGASHRTGGAPSGGGLDQIREIVRT 282
Query: 271 ------------SPQFQVLRAMVQANPQLF 288
S Q+ L ++Q NP+ F
Sbjct: 283 NPEMLEPLLEQLSQQYPQLNGLIQQNPEEF 312
>gi|358333357|dbj|GAA51877.1| UV excision repair protein RAD23 [Clonorchis sinensis]
Length = 504
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 134/271 (49%), Gaps = 59/271 (21%)
Query: 24 VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK--NKRP 81
V DVK KIE +G++ + A+ Q LI+ GKV++D+ TL++ KV + F+V+M +K P
Sbjct: 137 VSDVKKKIEAEKGNE-FSASSQTLIHSGKVMEDEKTLKQYKVTDKGFIVVMAVSKPSKEP 195
Query: 82 TG--EGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSA 139
T E + P ++ QS PA T A+ +T VP S P A+ SA
Sbjct: 196 TASVEKLPEAAKPVQSEQS---IPANTVASVQETTVPRSDVP----------AAAGPESA 242
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
T ES LV G E AI +I+ MG ++R V+RA+RA++NNP+RAVEYL S
Sbjct: 243 TGESA--------LVTGAEYERAISEIVGMG---FERSMVIRAMRASFNNPDRAVEYLLS 291
Query: 200 G-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG 258
G IP V P G+ ++ P + S + +P+
Sbjct: 292 GNIPNAV----VREQPAGGR-----ERVDTPGDEHSASESPSSEDPISA----------- 331
Query: 259 AAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
L + PQFQ +RA+VQANP+L P
Sbjct: 332 ---------LASLPQFQQMRALVQANPELLP 353
>gi|291407417|ref|XP_002719904.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 488
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 146/324 (45%), Gaps = 72/324 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ ++ +F +++ P TV +K KIE QG D +P A Q L+Y G+VL DD L
Sbjct: 1 MRLTLEAGPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 62 ENKVAENSFVVIMLTK-----------NKRPTGEGSTRSTAPTKA---------PQSSAP 101
+ ++ E+ V +++ + G+ + A A P + A
Sbjct: 61 DCQIHEHHAVTVLVARPEAATTAAPATATATAGQSHPATAASAGAGAPARGPALPAAPAT 120
Query: 102 TPAATPATAPQTA---VPISTE-------PTPAPTPAPASASVSSVSATSESGVYGHAAS 151
+ ATPA A T VP ++ P P+PTP A A SS + SE AA
Sbjct: 121 STRATPAPASSTCAMSVPATSTRATPRLPPCPSPTPDDAIAGPSSRAQPSE-----QAAR 175
Query: 152 NLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP----EQAEV 207
L+ E + +I+ MG ++R+ V+ ALRA++NNP RAVEYL G+P AEV
Sbjct: 176 ALLTRPASEQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRASAAEV 232
Query: 208 QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS--L 265
+P PQ SS A D G+ +G+G L
Sbjct: 233 EP-----------------PQAGSSGAGRSSAVEA-----------DEGAATSGSGGHPL 264
Query: 266 DFLRNSPQFQVLRAMVQANPQLFP 289
D LRN P+F+ LR ++Q P L P
Sbjct: 265 DVLRNLPEFEELRRIIQHFPSLLP 288
>gi|195469335|ref|XP_002099593.1| GE14546 [Drosophila yakuba]
gi|194185694|gb|EDW99305.1| GE14546 [Drosophila yakuba]
Length = 411
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 139/305 (45%), Gaps = 62/305 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 62 ENKVAENSFVVIMLTK-----NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP----- 111
V E F+V+MLT+ N G + T + S P + + +P
Sbjct: 60 SYNVDEKKFIVVMLTRDSSSSNPNQLGVKESDKLTSTDNLKDSMPREESNHSNSPPVTRN 119
Query: 112 -QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
+ ++ +S E TP T + + +++ + A SNL+ G+ + +++MG
Sbjct: 120 SEESILLS-ETTPISTD-------NLIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG 171
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT 230
+ R+ V RA+ A+YNNPERAVEYL +GIP + G N +
Sbjct: 172 ---YPREQVERAMAASYNNPERAVEYLINGIPAEE-----------GTIDNDVNE----- 212
Query: 231 QPAPVTSSGPNANPLDLFPQGLPDVGSGA-------AGAGSLDFLRNSPQFQVLRAMVQA 283
S+ PN P GS + + + +FLR+ PQF +R+++
Sbjct: 213 ------STNPNG----------PQTGSASSVERPSESNSDPFEFLRSQPQFLQMRSLIYQ 256
Query: 284 NPQLF 288
NP L
Sbjct: 257 NPHLL 261
>gi|76156833|gb|AAX27952.2| SJCHGC06167 protein [Schistosoma japonicum]
Length = 231
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 116/204 (56%), Gaps = 22/204 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTLK +F ++++ +D V DVK KIE +GS+ + A+ Q LI+ GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ KV ++ FVV+M +P EGS ++AP PT T P V
Sbjct: 60 DYKVTDSGFVVVMSV--SKPAKEGS--ASAPGNPAGEGRPT---TDKKIPDVDV------ 106
Query: 122 TPAPTPAPASASVSSV-----SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
T +P+ P + S S+ + ++ + G S+LV G N E +Q+++ MG +++
Sbjct: 107 TESPSSKPDANSQPSLPTVTTTQSTTTNTLGFGESSLVTGENFERVVQELVSMG---FEK 163
Query: 177 DTVVRALRAAYNNPERAVEYLYSG 200
V+RA+RA +NNP+RA EYL SG
Sbjct: 164 PLVIRAMRAGFNNPDRAFEYLSSG 187
>gi|444725253|gb|ELW65827.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 367
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 42/261 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KT + +F +++ PE+TV +K KIE+ +G D +P Q LIY G++LKDDT L+
Sbjct: 1 MQVTLKTPQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVEDQKLIYAGEILKDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAP-TPAATPATAPQTAVPISTE 120
E + E V+ S T SS+P TPA+TPA + S+E
Sbjct: 61 EYNIEEKDSVL----------------SKPATDFLVSSSPGTPASTPAAVTPASRRTSSE 104
Query: 121 PTPAPTPAPASASVSSVSA--TSESGVYGHA-ASNLVA--------GNNLEGAIQQILDM 169
P P P + + V+ TS G A ASN++A G + + + +I+ M
Sbjct: 105 PAPEQEQPPEELADAPVATGPTSTGWTAGDASASNMLAGATGALTPGQSYQDMVSEIMSM 164
Query: 170 GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQP 229
G +++ V+ ALRA++N+P RAVEYL +GIP VA P +AA+ M P
Sbjct: 165 G---YEQAQVIAALRASFNDPHRAVEYLLTGIPGDRGSDTVADLP---RAAS----MGAP 214
Query: 230 TQPAPVTS----SGPNANPLD 246
PA TS S P PL+
Sbjct: 215 PSPASATSTAMASSPEGTPLE 235
>gi|291407421|ref|XP_002719934.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 408
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 146/329 (44%), Gaps = 72/329 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +K +F +++ P TV +K KIE QG D +P A Q L+Y G+VL DD L
Sbjct: 1 MRLTLKAWPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ ++ E+ V +++ + + T +TA A QS T A+ A AP + P
Sbjct: 61 DCQIHEHHAVTVLVARPEAATTAAPATATATATAGQSHPATAASAGAGAPARGPALPAAP 120
Query: 122 TPA--PTPAPASASVSSVSA------------------------TSESGVYG-------- 147
+ TPAPAS S S ++ T + + G
Sbjct: 121 ATSTRATPAPASVSASGTASAQPAPAGAPQAAGQQAGPPGSPSPTPDDAIAGPSSRAQPS 180
Query: 148 -HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP---- 202
AA L+ E + +I+ MG ++R+ V+ ALRA++NNP RAVEYL G+P
Sbjct: 181 EQAARALLTRPASEQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRA 237
Query: 203 EQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA 262
AEV+P PQ SS A D G+ +G+
Sbjct: 238 SAAEVEP-----------------PQAGSSGAGRSSAVEA-----------DAGTATSGS 269
Query: 263 GS--LDFLRNSPQFQVLRAMVQANPQLFP 289
G LDFL N P+FQ LR ++Q +P L P
Sbjct: 270 GGHPLDFLLNHPEFQQLRQIIQHDPSLLP 298
>gi|331230142|ref|XP_003327736.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306726|gb|EFP83317.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 149/332 (44%), Gaps = 73/332 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL+ F ++V+P TV +K I+ QG + QQ LI+ GKVL DD T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATP----------ATAP 111
+ V E F V+ML K K TAPT P PA+ P ATAP
Sbjct: 58 QIGVKEKDFFVVMLIKPK----------TAPT------VPAPASVPSGAGAAASTSATAP 101
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
A TP+ T APAS + SA + + G + G+NL+ I +I++ G
Sbjct: 102 TPAAAQPATATPSSTTAPASTDADNASAATPAS--GTQDPGFLVGSNLQKTIDEIVN--G 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV-QPVARAPGNG------------- 217
+ R+ V +A+RAA+NNP+RAVEYL +GIP + P P N
Sbjct: 158 MGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAPPVTLPTNAPSTVNPSATTPSA 217
Query: 218 -------------QAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS 264
AA Q QP + A P A P Q +P + +
Sbjct: 218 AAAPAAGSRNLFEAAAEHVAQQRQPGEAAL-----PTAEPAQAGAQSIP-------TSRA 265
Query: 265 LDFLRNSPQFQVLRAMVQANPQLF-PCFKSWG 295
L+ LRN+PQ LR +VQ NP L P + G
Sbjct: 266 LEALRNNPQMIQLRQLVQQNPNLLQPFLQQLG 297
>gi|66363310|ref|XP_628621.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
gi|46229830|gb|EAK90648.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
Length = 362
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 143/290 (49%), Gaps = 53/290 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++T++ T +VEV+ + ++ VK I+ + + V A++ LI+ G++L D T++
Sbjct: 22 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 79
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E +V++L+K A AA Q +
Sbjct: 80 DVGIKEGERLVVLLSK---------------------GASQKAAESQQNKQNNTSNESNT 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + ++++ + S S+ + A++ L+ G LE I I++MG ++R+ V R
Sbjct: 119 NTDPAASATTSNIQAQSGNSDPSIDSRASA-LLTGTELEKTITNIVNMG---FEREQVTR 174
Query: 182 ALRAAYNNPERAVEYLYSG--IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RAA+NNP+RAVEYL SG IPE PVA N NS + A +TSS
Sbjct: 175 AMRAAFNNPDRAVEYLTSGLPIPE----NPVAPNHTNITPVNSNASL-----NAGLTSSE 225
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
DL + LP G+L+ LR +P FQ LR++VQ +P++ P
Sbjct: 226 ------DLSSEQLP---------GNLESLRTNPLFQQLRSVVQQDPRILP 260
>gi|302668202|ref|XP_003025675.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
gi|291189798|gb|EFE45064.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 25/208 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++ +P D + DVK KI + +G +PA+QQ LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIASEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATP---ATAPQTAVPIS 118
+ E F+V M++K K + S+ A S+ + A AP + P
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPSASAASSSQTPAAAPSAPAPTTPSAPTRANAPASETP-- 115
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
TP+PA + SG + S L+ GN + AI Q+L MG + R
Sbjct: 116 ------ATPSPAGGA--------SSGATFNDPSALLMGNQGQEAITQMLAMG---FSRGD 158
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAE 206
+ RA+RAAY NP+RA+EYL +GIPE++E
Sbjct: 159 IDRAMRAAYFNPDRAIEYLLNGIPEESE 186
>gi|378730563|gb|EHY57022.1| UV excision repair protein Rad23 [Exophiala dermatitidis
NIH/UT8656]
Length = 405
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 115/219 (52%), Gaps = 13/219 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P DT+ VK K+ +G D A+QQ LIY GKVL D T+E
Sbjct: 1 MKLSFRDLKQQKFTIEAEPTDTIAQVKEKVAAEKGWD---ASQQKLIYSGKVLADANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E F+V M++K K +++ P+ +S+ TPAA A S +P
Sbjct: 58 SYKIEEKGFIVCMISKPKA----AASKPKEPSTPAATSSSTPAAPAAPPASAPAAPSEQP 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ PTPA ++ + S T G + S + GN E I+++ MG G R + R
Sbjct: 114 S-TPTPAQSATAAPSTDTTGAGGF--NDPSAFLMGNRNESTIREMESMGFG---RPEIER 167
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAA 220
ALRAAY NP+RA+EYL SGIPE + Q P G A
Sbjct: 168 ALRAAYFNPDRAIEYLLSGIPENIQAQQRQATPAAGTGA 206
>gi|426197465|gb|EKV47392.1| hypothetical protein AGABI2DRAFT_192582 [Agaricus bisporus var.
bisporus H97]
Length = 404
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 123/242 (50%), Gaps = 19/242 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKT + F ++++P DT+ +K KIE+ +PA Q +IY GK+L DD T+E
Sbjct: 1 MKITVKTTQQKVFQIDIEPTDTIGSLKAKIESAHN---HPAPTQKIIYSGKILSDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
V E F V+M+ K K APT A + + + T P A +TE
Sbjct: 58 SCGVKEKDFFVLMVAKPKPTPTPKPEAPAAPTTAEPTPPSSTSPATTTTPSHAE--TTET 115
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ P+P P + S+ S +S S + G L+ IQ +++MG +DR+ V+R
Sbjct: 116 SSQPSPLPPPTTTSTSSTSSTEPATLGDGSGFLTGAALQTTIQNMMEMG---FDREQVLR 172
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRA+YNNP+RAVEYL +GIP E A A G P + TQ P S P
Sbjct: 173 ALRASYNNPDRAVEYLMTGIPAHLE----AEAAG-------PPRTSSTTQSNPAAPSAPQ 221
Query: 242 AN 243
+N
Sbjct: 222 SN 223
>gi|331250500|ref|XP_003337858.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316848|gb|EFP93439.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 150/333 (45%), Gaps = 75/333 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL+ F ++V+P TV +K I+ QG + QQ LI+ GKVL DD T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATP----------ATAP 111
+ V E F V+ML K K TAPT P PA+ P ATAP
Sbjct: 58 QIGVKEKDFFVVMLIKPK----------TAPT------VPAPASVPSGAGAAASTSATAP 101
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
A TP+ T APAS + SA + + G + G+NL+ I +I++ G
Sbjct: 102 TPAAAQPATATPSSTTAPASTDADNASAATPAS--GTQDPGFLVGSNLQKTIDEIVN--G 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNG------------ 217
+ R+ V +A+RAA+NNP+RAVEYL +GIP A PV P N
Sbjct: 158 MGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAAPVT-LPTNAPSTVNPSATTPS 216
Query: 218 --------------QAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
AA Q QP + A P A P Q +P +
Sbjct: 217 AAAAPAAGSRNLFEAAAEHVAQQRQPGEAAL-----PTAEPAQAGAQSIP-------TSR 264
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWG 295
+L+ LRN+PQ LR +VQ NP L P + G
Sbjct: 265 ALEALRNNPQMIQLRQLVQQNPNLLQPFLQQLG 297
>gi|323509241|dbj|BAJ77513.1| cgd7_4730 [Cryptosporidium parvum]
Length = 341
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 149/292 (51%), Gaps = 57/292 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++T++ T +VEV+ + ++ VK I+ + + V A++ LI+ G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E +V++L+K G+++ A ++ + + + + T P
Sbjct: 59 DVGIKEGERLVVLLSK-------GASQKAAESQQNKQNNTSNESNTNTDP---------- 101
Query: 122 TPAPTPAPASASVSSVSATSESG--VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
ASA+ S++ A S + AS L+ G LE I I++MG ++R+ V
Sbjct: 102 -------AASATTSNIQAQSGNSDPSIDSRASALLTGTELEKTITNIVNMG---FEREQV 151
Query: 180 VRALRAAYNNPERAVEYLYSG--IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RA+RAA+NNP+RAVEYL SG IPE PVA N NS + A +TS
Sbjct: 152 TRAMRAAFNNPDRAVEYLTSGLPIPE----NPVAPNHTNITPVNSNASL-----NAGLTS 202
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
S DL + LP G+L+ LR +P FQ LR++VQ +P++ P
Sbjct: 203 SE------DLSSEQLP---------GNLESLRTNPLFQQLRSVVQQDPRILP 239
>gi|409080544|gb|EKM80904.1| hypothetical protein AGABI1DRAFT_112618 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 409
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 114/219 (52%), Gaps = 8/219 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKT + F ++++P DT+ +K KIE+ +PA Q +IY GK+L DD T+E
Sbjct: 1 MKITVKTTQQKVFQIDIEPTDTIGSLKAKIESAHN---HPAPTQKIIYSGKILSDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
V E F V+M+ K K APT A + + + T P A T
Sbjct: 58 SCGVKEKDFFVLMVAKPKPTPTPKPETPAAPTTAEPTPPSSTSPATTTTPSHAETTETSS 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+P P P + + ++ S +S S + G L+ IQ +++MG +DR+ V+R
Sbjct: 118 QPSPLPPPTTTATTTSSTSSTEPATLGDGSGFLTGAALQTTIQNMMEMG---FDREQVLR 174
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVA--RAPGNGQ 218
ALRA+YNNP+RAVEYL +GIP E + R P Q
Sbjct: 175 ALRASYNNPDRAVEYLMTGIPAHLEAEAAGPPRTPSTAQ 213
>gi|209879445|ref|XP_002141163.1| UV excision repair protein Rad23 [Cryptosporidium muris RN66]
gi|209556769|gb|EEA06814.1| UV excision repair protein Rad23, putative [Cryptosporidium muris
RN66]
Length = 347
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 134/288 (46%), Gaps = 43/288 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI V+T++ T ++EV+ TV +K IE A++Q LI+ G++L D T++
Sbjct: 1 MKIKVRTVQNTEHEIEVEDNFTVLQIKQLIEAKNSQ--MTASRQKLIFAGRILGDSQTVQ 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E +V++++K G +S+ ++ T A T P++T
Sbjct: 59 DIGIKEGERLVVLVSK-----GAIQQKSSEISQTKNIGNSTSAQTT--------PVTTNT 105
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + Y +AS L+ G LE I I++MG ++R+ V+
Sbjct: 106 GVIPNNC-------------DQNTYESSASALITGTELETTINNIVNMG---FERNQVIA 149
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+NNP+RAVEYL SGIP + + S + Q A T P
Sbjct: 150 AMRAAFNNPDRAVEYLTSGIP----LPGIIIQGQGQGQGQSEVSLSQ----AATTPINPE 201
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
+ ++ SG G+LD LR +P FQ LR +VQ +P++ P
Sbjct: 202 MSDINQISTN----ASGDTVTGALDSLRTNPIFQQLRMVVQQDPRILP 245
>gi|308808630|ref|XP_003081625.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS)
[Ostreococcus tauri]
gi|116060090|emb|CAL56149.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS),
partial [Ostreococcus tauri]
Length = 245
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 85/141 (60%), Gaps = 11/141 (7%)
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
+ + +V G LE + I+ MG ++R+ V++ALRAA+NNP+RAVEYL +GIPEQAE
Sbjct: 5 SGAGMVMGPELEATVANIMTMG---FEREQVLKALRAAFNNPDRAVEYLLTGIPEQAEAP 61
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDV-GSGAAGAGSLDF 267
A A P P P S+ L+LFP+G+PD+ G GA G LDF
Sbjct: 62 RPA-------AQAQPAAAAAPQAPQADVSAALGGGALNLFPEGIPDMSGDGAGDDGMLDF 114
Query: 268 LRNSPQFQVLRAMVQANPQLF 288
LR +PQFQ +RAMVQ NPQ+
Sbjct: 115 LRENPQFQAIRAMVQGNPQIL 135
>gi|449546744|gb|EMD37713.1| hypothetical protein CERSUDRAFT_83454 [Ceriporiopsis subvermispora
B]
Length = 363
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 147/288 (51%), Gaps = 27/288 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTL+ F ++ + DTV D+K KI QG V Q +IY GK+L D T+E
Sbjct: 1 MKLTVKTLQQKVFHIDAEGSDTVADIKQKISESQGHAV---ESQKIIYSGKILPDTKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS--T 119
++ E F+V+M++K K ++ ST+ T A + A A A +P A
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAAPAASSSTSTTTATPAPAVPSPAPTAPSPAPAATTPAAV 117
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+P AP APA A+ + ++ G +S V G+ L+ +IQ +++MG ++RD V
Sbjct: 118 QPPNAPLLAPAPATPVAAPQPAQERALGDLSS-FVTGDALQQSIQNMIEMG---FERDQV 173
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
+RALRA++NNP+RAVEYL++GIP E AA +P P Q A
Sbjct: 174 MRALRASFNNPDRAVEYLFNGIPAHLEA----------TAAGTPAPAPNLFQLAQQQQQQ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
FP G+P G L L+N+PQFQ LR ++ NP L
Sbjct: 224 QQQQATGGFP-GMP-------GGVDLAALQNNPQFQQLRQVIAQNPAL 263
>gi|409045113|gb|EKM54594.1| hypothetical protein PHACADRAFT_258558 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 119/226 (52%), Gaps = 27/226 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTL+ +F ++ +P +TV D+K KIE G +P A Q LIY G+VL DD T+E
Sbjct: 1 MKITVKTLQQKTFQLDAEPSETVADLKKKIEEGHG---HPVATQKLIYSGQVLGDDKTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V+M+ K K + + A A S+AP+ A A A S
Sbjct: 58 SCNIKEKGFLVLMVAKPKAEPKPAAAATPAAAAAATSAAPSNPPAAAPAAAPAPATSIPA 117
Query: 122 ------------TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDM 169
TPA AP S S A ++ + V G +L+ A+Q +++M
Sbjct: 118 AAPPQPPNAPILTPAQA-APVSTPAQSARAINDENAF-------VTGADLQTAVQNMMEM 169
Query: 170 GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE-VQPVARAP 214
G ++R+ +RALRA+YNNPERAVEYL++GIP E V RAP
Sbjct: 170 G---FEREQAMRALRASYNNPERAVEYLFNGIPSHLEDVAAGTRAP 212
>gi|67621260|ref|XP_667750.1| RAD 23B protein [Cryptosporidium hominis TU502]
gi|54658903|gb|EAL37511.1| RAD 23B protein - channel catfish [Cryptosporidium hominis]
Length = 341
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 57/292 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++T++ T +VEV+ + ++ VK I+ + + V A++ LI+ G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E +V++L+K A AA Q +
Sbjct: 59 DVGIKEGERLVVLLSK---------------------GASQKAAESQQNKQNNTSNESNT 97
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + ++++ + S S+ + A++ L+ G LE I I++MG ++R+ V R
Sbjct: 98 NTDPAASATTSNIQTQSGNSDPSIDSRASA-LLTGTELEETITNIVNMG---FEREQVTR 153
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+NNP+RAVEYL SG+P P N A P PT PV S+
Sbjct: 154 AMRAAFNNPDRAVEYLTSGLP----------IPENPVA-------PNPTNITPVNSNASL 196
Query: 242 ANPL----DLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
L +L + LP G+L+ LR +P FQ LR++VQ +P++ P
Sbjct: 197 NAGLTPSEELSSEQLP---------GNLESLRTNPLFQQLRSVVQQDPRILP 239
>gi|187117168|ref|NP_001119685.1| rad23 protein [Acyrthosiphon pisum]
gi|89473754|gb|ABD72689.1| putative RAD23-like B [Acyrthosiphon pisum]
gi|239788640|dbj|BAH70991.1| ACYPI000077 [Acyrthosiphon pisum]
Length = 347
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 138/295 (46%), Gaps = 57/295 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I K L+ +F +E+ + TV +K K++ +GS+ Y A Q LIY GK+L DDT +
Sbjct: 1 MLITFKNLQQHTFKLEIDSDQTVRQLKEKLQAEKGSE-YLAENQKLIYAGKILSDDTKIS 59
Query: 62 ENKVAENSFVVIMLTK---NKRPTGEGSTRSTAPTKAPQSSAPTPA-ATPAT-APQTAVP 116
+ + FVV+M++K T +T S A + + TP+ +TP A +++P
Sbjct: 60 DCNIDSKKFVVVMVSKATGAVTATSATNTASAASATSVSDTKSTPSVSTPMIPADNSSIP 119
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
I+ P+P S +ASN + E IQ I+DMG ++R
Sbjct: 120 IAQPRVVEQLPSPVETRASE----------PESASN----DETERTIQNIMDMG---YER 162
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
V ALRA++NNP+RAVEYL +GIP++ P P +
Sbjct: 163 PQVEEALRASFNNPDRAVEYLLTGIPQELLTDPTI----------------SPNRSVLSE 206
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLD---FLRNSPQFQVLRAMVQANPQLF 288
SG DL SG++ + D FLRN P FQ +R +VQ NP+L
Sbjct: 207 DSG------DL---------SGSSQVPATDPLAFLRNQPTFQQMRTVVQQNPELL 246
>gi|302506096|ref|XP_003015005.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
gi|291178576|gb|EFE34365.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
Length = 380
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 115/204 (56%), Gaps = 19/204 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++ +P D + DVK KI + +G +PA+QQ LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIASEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K ++ +++ + + TP+ + + P S
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAP--SASAASSSQTPAAAPSAPAPTTPSAPTRASAPASE-- 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TPA TP+PA + SG + S L+ GN + AI Q+L MG + R + R
Sbjct: 114 TPA-TPSPAGG--------ASSGATFNDPSALLMGNQGQEAITQMLAMG---FSRGDIDR 161
Query: 182 ALRAAYNNPERAVEYLYSGIPEQA 205
A+RAAY NP+RA+EYL +GIPE++
Sbjct: 162 AMRAAYFNPDRAIEYLLNGIPEES 185
>gi|315049547|ref|XP_003174148.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
gi|311342115|gb|EFR01318.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
Length = 380
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 115/205 (56%), Gaps = 14/205 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P + + DVK KI T +G +PA+QQ LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + S++ T A APTPA A A A P+ T
Sbjct: 58 SYSIEEKGFIVCMVSKPKAAAPSAAAASSSQTPAAAPPAPTPATPSAPARVNAPPLQTPA 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP+P +S + S + S L+ GN + AI Q+L MG + R + R
Sbjct: 118 TPSPAGGASSGASSGATFNDPSA--------LLMGNQGQEAITQMLAMG---FSRGDIDR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAE 206
A+RAAY NP+RA+EYL +GIP++ E
Sbjct: 167 AMRAAYFNPDRAIEYLLNGIPDEPE 191
>gi|254569268|ref|XP_002491744.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|238031541|emb|CAY69464.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|328351754|emb|CCA38153.1| Probable DNA repair protein RAD23 [Komagataella pastoris CBS 7435]
Length = 338
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 135/300 (45%), Gaps = 62/300 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK ++V P DT+ K K+ TV+ SD A++ +Y GKVL+DD +
Sbjct: 1 MKIVFKDLKKEKVILDVDPTDTILSAKEKLATVKNSD---ASKIKFVYSGKVLQDDKDFD 57
Query: 62 ENKVAENSFVVIML---TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
KV EN ++ ML K + P + ++S + T AP AVP
Sbjct: 58 AFKVKENDVIIFMLPSVFKKEEP-------KNLENRIDKTSTESSKTTTIAAPGIAVP-- 108
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P P S S + AS GN+ E AI+ I++MG +DR
Sbjct: 109 ------PVPVNTSGSFN--------------ASTFAVGNDRENAIRNIMEMG---YDRSQ 145
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA---RAPGNGQAANSPTQMPQPTQPAPV 235
V ALRAA+NNP+RAVEYL +G+P E +P+A AP +G++ QP V
Sbjct: 146 VEAALRAAFNNPDRAVEYLLTGLPVNNE-EPIAGSRSAPNDGRS--------QPVSSTGV 196
Query: 236 TSSGPNANP-LDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLR---AMVQANPQLFPCF 291
S+ P DLF AA A S R + Q L ++Q NP++ F
Sbjct: 197 ESTSTETAPGTDLF--------EAAAVASSGQQQRENTQRDDLMQIGELIQNNPEMVEPF 248
>gi|198436382|ref|XP_002131525.1| PREDICTED: similar to RAD23a homolog [Ciona intestinalis]
Length = 335
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 133/289 (46%), Gaps = 55/289 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTLK F +E+ E+ V +K KI +G+D +P A Q LIY GK+L D +L+
Sbjct: 1 MLITIKTLKQNIFKIEIDEEEPVKVLKEKIAKEKGNDNFPVAGQKLIYAGKILDDSKSLK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+ + F+V M+TK K + T A ++ T P P AV +T
Sbjct: 61 EYKIEDGKFIVAMVTKPKSVSPPAPTPPEPTEAAVTTTTSTQEEQPTNQP--AVASTTSS 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+PA A +SAS +VS + V G A + LV I+ MG ++R+ VV
Sbjct: 119 SPAEEQA-SSASPLNVSQAESTLVTGEAYNELVTS---------IMAMG---FERERVVA 165
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ--PTQPAPVTSSG 239
AL A++ NP+RAVEYL SG V AP P Q P PT+ AP++ S
Sbjct: 166 ALNASFCNPDRAVEYLMSGTTN------VGTAP--------PQQQPDTIPTENAPISDS- 210
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
+ L ++P+ QV+ +Q NP L
Sbjct: 211 -----------------------NVFNDLMDNPEIQVMAQQIQQNPHLL 236
>gi|365761179|gb|EHN02849.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 397
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 122/257 (47%), Gaps = 38/257 (14%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+F+ K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTA------ 114
E + + VV M+++ K T+ T P AP+++ PA P+T TA
Sbjct: 58 SECGLKDGDQVVFMISQKKS----TKTKVTEPPAAPETATTVPAGEPSTEQATASADAPT 113
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P + E P P + V SVS V G I++I++MG +
Sbjct: 114 APAAEELQPQEEPNSNTEQVESVST-----------PGFVVGTQRNETIERIMEMG---Y 159
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
R+ V RALRAA+NNP+RAVEYL GIPE R P Q A +PT+ P PT
Sbjct: 160 PREEVERALRAAFNNPDRAVEYLLMGIPEN------LRPPEQQQQAVAPTEQP-PT--TA 210
Query: 235 VTSSGPNANPLDLFPQG 251
T+ P + DLF Q
Sbjct: 211 TTAEQPAED--DLFAQA 225
>gi|328771201|gb|EGF81241.1| hypothetical protein BATDEDRAFT_16317 [Batrachochytrium
dendrobatidis JAM81]
Length = 377
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 140/295 (47%), Gaps = 42/295 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL+ +F VEV+ V +VK I +G Y A Q LI+ GK+L D +T+E
Sbjct: 1 MKLTFKTLQQDNFQVEVEQTAKVIEVKEAILAAKG---YTVASQKLIHSGKILNDASTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K++E F+V+M++K K + AP PT P P +AVP
Sbjct: 58 ELKISEKDFIVVMVSKPKPVAAPAPVVAPAPVTPAVPVTPTVPVAPTATPASAVP----- 112
Query: 122 TPAPT-PAPASASVSSVSATSESG-VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PA + P + + + +G VY +A SNL ++MG + RD V
Sbjct: 113 -PADSVDTPVNPETLTTTTALATGAVYENAVSNL-------------MEMG---FPRDQV 155
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+R A+NNP+RA EYL +GIP+ + + AP + T P T ++
Sbjct: 156 THAMRTAFNNPDRAAEYLMTGIPDSVAREFASTAP----VLSDTTTTPSSTAAPATPAAP 211
Query: 240 PNANPLDLFPQGLPDVG---SGAA-----GAG---SLDFLRNSPQFQVLRAMVQA 283
++LF SGAA GAG +L FLRNSPQFQ LR +V +
Sbjct: 212 AATQHINLFEAAAAQAAQSRSGAAASHAPGAGDASTLSFLRNSPQFQQLRQLVHS 266
>gi|444723953|gb|ELW64577.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 302
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 109/212 (51%), Gaps = 35/212 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 7 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAP 66
Query: 87 TRSTAPTKA-----------------PQSSAPTPAATPATAPQTAVPISTEPTPA----- 124
T + A + A PA+TPA+ + +S+EP PA
Sbjct: 67 TTTQQSNPATTTTVTSSTAPAVAQAPAPTPALAPASTPASITPVSTTVSSEPAPASATKQ 126
Query: 125 --PTPAPASASVS--------SVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA V+ + +S S ++ A S LV G + E + +I+ MG +
Sbjct: 127 EKPAEKPADTPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 183
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
+R+ V+ ALRA++NNP+RAVEYL I + E
Sbjct: 184 EREQVIAALRASFNNPDRAVEYLLMQISQHQE 215
>gi|47206809|emb|CAG13273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 134/295 (45%), Gaps = 44/295 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F +E+ E+TV +K KIE +G D +P + LIY GK+L DD L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKRLKEKIEEEKGKDHFPVSGLKLIYAGKILSDDKPLK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+++ +FVV+M TK K + T AP + P P + P
Sbjct: 61 EYKISDKNFVVVMATKPKTAAAAPQPSAAG-TTAPPALDPGPDPCRRHRLRPPPPPPRPE 119
Query: 122 TPAPT-----PAPASASVSSVSATSESG--VYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
AP S + SG + A SNLV G + E + +I+ MG +
Sbjct: 120 NRCSIVFIDLTAPPPPLPPSRGSEGSSGTNLIDEAVSNLVTGPSYESMVNEIMLMG---Y 176
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA++NNP+RAVEYL + AE P + AP SP
Sbjct: 177 EREQVVAALRASFNNPDRAVEYLLTAAGPAAEATPASSAPAAPAGTGSP----------- 225
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
+GA G L FLRN PQFQ +R ++Q N L P
Sbjct: 226 ----------------------AGAEGVNPLSFLRNQPQFQQMRQLIQQNAALLP 258
>gi|71022291|ref|XP_761375.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
gi|46097608|gb|EAK82841.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
Length = 447
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 113/236 (47%), Gaps = 48/236 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +K+L G +F ++ + DT+ +K KI+ QG + Q +I+ GK+L DD T+
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQNEQG---HAPELQKIIFSGKILTDDKTVA 57
Query: 62 ENKVAENSFVVIMLTKNKRP---TGEGSTRSTAPTKAPQSSAPTPAATPAT------APQ 112
+ K+ E F+V+M++K K P T ST AP K +++
Sbjct: 58 DCKIKEKDFLVVMVSKPKAPKPATAGASTSVAAPEKPTEAALAPAPDAARAAAEAPKGQD 117
Query: 113 TAVPIS------------------------TEPTPAPTPAPASASVSSVSATSESGVYGH 148
AVP S P A + P+SA S TS S
Sbjct: 118 AAVPTSDSSSPATTATAAATTTAAAAAAAADAPASAESATPSSAQTQQPSGTSGS----- 172
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204
+ G LE A+Q +++MG ++RD V RA+RAA+NNP+RAVEYL +GIPE
Sbjct: 173 ----FLTGGALESAMQSMVEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEH 221
>gi|344302977|gb|EGW33251.1| hypothetical protein SPAPADRAFT_60596 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 111/202 (54%), Gaps = 20/202 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I K K + +EV+ DTV K K+ + + A+Q L+Y GKVL DD TLE
Sbjct: 1 MQIIFKDFKKQTVPIEVELTDTVLSTKEKLGQAKSCE---ASQIKLVYSGKVLVDDKTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+ E ++ M++K K S++S+ P PQ++A TP PA+ Q S
Sbjct: 58 EYKIKEGVSIIFMISKAK------SSQSSTPQ--PQAAA-TPEQKPASESQPKQETSQLG 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A T A A+A+ +S A +E+ AS G+ E IQ I++MG +DR V
Sbjct: 109 NAAATSAAAAAAPASDEAVTEA-----PASTFAVGSEREATIQNIMEMG---YDRPQVEN 160
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
ALRAA+NNP RAVEYL +GIPE
Sbjct: 161 ALRAAFNNPHRAVEYLITGIPE 182
>gi|390335920|ref|XP_001176797.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Strongylocentrotus purpuratus]
Length = 467
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 147/328 (44%), Gaps = 44/328 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F VE++ TV ++K +IE QG D +PA+ Q LIY GK+L DD L
Sbjct: 1 MLIVLKTLQQQTFRVEIEDSATVRNLKDEIEKTQGKD-FPASGQKLIYAGKILSDDNPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP---QTAVPIS 118
+ E SFVV+M+T KR E PQ +A +A+ ++AP + +
Sbjct: 60 SYNIDEKSFVVVMVT--KRLQTEEKKEEKKEEAKPQETAAAASASASSAPVAMEEGTTKA 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGV--YGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
E A A+ + S SG+ + A S LV G + + +++ +G + R
Sbjct: 118 AEEKKTEEKAAEPAAETKTQEESSSGLQAFHSAESTLVTGEEYQNMVTELMSLG---FPR 174
Query: 177 DTVVRALRAAYNNPERAVEYLY-----SGIPEQAEVQPVARAPGNGQAANSPTQM----- 226
D V+RA++A+YNNP RA EYL I QA + + N T++
Sbjct: 175 DKVIRAMQASYNNPNRAAEYLVVSNKGGAIAHQAFHSAESTLVTGEEYQNMVTELMSLGF 234
Query: 227 PQPTQPAPVTSSGPNAN-PLDLFPQGLPD----------------------VGSGAAGAG 263
P+ + +S N N + G+PD G +
Sbjct: 235 PRDKVIRAMQASYNNPNRAAEYLVVGIPDPPPETPGDQPPSQPSLQSSQSSSQPGGESSP 294
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLFPCF 291
SL+FL PQFQ LR + ++P + F
Sbjct: 295 SLEFLDQLPQFQQLREAISSDPAMLSQF 322
>gi|324513075|gb|ADY45389.1| UV excision repair protein RAD23 A [Ascaris suum]
Length = 348
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 125/288 (43%), Gaps = 62/288 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI KT+ +F VEV P T+ ++K KI +G YP Q LIY GK+L D T+E
Sbjct: 1 MKITFKTISQVTFHVEVDPSITIGELKAKIAEQEGQLEYPVDGQKLIYNGKILDDAQTVE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+ F+V+M+ + K P + + P TPA A +VP +
Sbjct: 61 ELKIDAAKFIVVMVARKKAPPPAANAPESTPA--------TPAVEEGAA---SVPSTEAV 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T APT A + +A ++ E +Q I+ MG + RD V+R
Sbjct: 110 TAAPTGTAQPAPQQASAAAPDALTPEQ-----------EETVQAIVAMG---YPRDRVIR 155
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+ N +RAVEYL + IP++ E+
Sbjct: 156 ALRAAFFNGDRAVEYLCTEIPDEEEL---------------------------------- 181
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
A D A G L+FLR PQF+ LR +VQ+NP + P
Sbjct: 182 AGQHDEGEAEESAGEESAQG---LEFLRQLPQFEQLRELVQSNPAILP 226
>gi|412992628|emb|CCO18608.1| predicted protein [Bathycoccus prasinos]
Length = 392
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 143/319 (44%), Gaps = 58/319 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVLKDDTT 59
MKI +KTL F++E+ ++ K ++G A L++ +G+VL+D+ T
Sbjct: 1 MKIHLKTLTAQKFEIEISDPSKTTILQCKKLAIEGQPQLGAETDFLVFVHKGQVLEDEKT 60
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
+ E ++ E+ FVV+M K K+P + + + AP P +SAP AA A A A+ T
Sbjct: 61 VSEAEITEDGFVVVMSKKTKKPAEKTTAAAPAPANPPATSAPDVAAPVAPAAAVAMAPQT 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P +P LV G LE AI+++ MG + RD
Sbjct: 121 -TAEVPVSSPG----------------------LVVGAELEKAIEELQAMG---FPRDQC 154
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV-TSS 238
V ALRAA+NNP+RAVEYL +GIPE V A + V T+
Sbjct: 155 VAALRAAFNNPDRAVEYLLNGIPEGMMVSAPAANAAAAAPPPAAAPGADAAAANAVRTAE 214
Query: 239 GPN------------------ANPLDLFPQGLP-----------DVGSGAAGAGSLDFLR 269
G + PL+LFPQG+P + + +L FLR
Sbjct: 215 GATASAPGVGAGGAPPAAADGSAPLNLFPQGIPANLAAAGAGGAEEEAQEGEVNTLAFLR 274
Query: 270 NSPQFQVLRAMVQANPQLF 288
++PQFQ +RAMVQ NP +
Sbjct: 275 DNPQFQAIRAMVQGNPSIL 293
>gi|167998815|ref|XP_001752113.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696508|gb|EDQ82846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD++V ++ V VK KIE QG D +P AQQ+LI+QGKVLKD+TT+
Sbjct: 1 MKISVKTLKGNHFDLQVAEDELVSSVKRKIEGSQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 62 ENKVAENSFVVIMLTK 77
+NKVAEN F+V+MLTK
Sbjct: 61 DNKVAENGFLVVMLTK 76
>gi|448122735|ref|XP_004204517.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|448125012|ref|XP_004205075.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358249708|emb|CCE72774.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358350056|emb|CCE73335.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 131/295 (44%), Gaps = 46/295 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ K K ++V+ DTV K K+ + + A+Q +Y GKVL DD TLE
Sbjct: 1 MQVIFKDFKKQKVPIDVELTDTVLSTKEKLAAEKDCE---ASQLKFVYSGKVLPDDKTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E ++ M++K K+ +T ++ PQ+S P ++ +E
Sbjct: 58 SLKIKEGDAIIFMISKTKKS-------ATPSSEQPQASKPEKESSK----------ESED 100
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+PTPA S + S ++ G+ E I+ I++MG ++R V
Sbjct: 101 KGSPTPAAEEESGAGASGAQAGSIFAQ-------GDERENNIRNIMEMG---YERPQVEA 150
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+NNP RAVEYL +GIPE +AP +A+S P + N
Sbjct: 151 ALRAAFNNPHRAVEYLLTGIPES------LQAPQPNYSASSGGAQPAVEAESTHNEDEEN 204
Query: 242 ANPLDLFPQGLPDVG--------SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
+ +LF A GAG D L Q ++LRA +Q NP+L
Sbjct: 205 EHGENLFEAAAAAAAQEGGAGDQDAAEGAG--DDLNEENQMRLLRAALQTNPELI 257
>gi|401840717|gb|EJT43420.1| RAD23-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 397
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 122/257 (47%), Gaps = 38/257 (14%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+F+ K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTA------ 114
E + + VV M+++ K T+ T P AP+++ PA P+T TA
Sbjct: 58 SECGLKDGDQVVFMISQKKS----TKTKVTEPPAAPETATTVPAGEPSTEQATASADAPT 113
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P + E P P+ + SVS V G I++I++MG +
Sbjct: 114 APAAEELQPQEEPSSNTEQAESVST-----------PGFVVGTQRNETIERIMEMG---Y 159
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
R+ V RALRAA+NNP+RAVEYL GIPE R P Q A +PT+ P PT
Sbjct: 160 PREEVERALRAAFNNPDRAVEYLLMGIPEN------LRPPEPQQQAVAPTEQP-PT--TA 210
Query: 235 VTSSGPNANPLDLFPQG 251
T+ P + DLF Q
Sbjct: 211 TTAEQPAED--DLFAQA 225
>gi|327493261|gb|AEA86337.1| putative DNA repair protein [Solanum nigrum]
Length = 166
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 199 SGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG 258
SGIPE AEV PVA +P + QA N P Q QPAP+ + GPNA+PL+LFPQGLP VGS
Sbjct: 1 SGIPEAAEVPPVAGSPPSVQAGNQPAQPQPAAQPAPIPAGGPNADPLNLFPQGLPSVGSN 60
Query: 259 AAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
AGA +LDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 61 TAGANTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQ 100
>gi|217071960|gb|ACJ84340.1| unknown [Medicago truncatula]
Length = 110
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRST 90
+NKV+E+ F+V+ML+K+K G T ST
Sbjct: 61 DNKVSEDGFLVVMLSKSK-VLGSAGTSST 88
>gi|224057188|ref|XP_002299163.1| predicted protein [Populus trichocarpa]
gi|222846421|gb|EEE83968.1| predicted protein [Populus trichocarpa]
Length = 349
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 60/76 (78%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F+++V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTK 77
+NKV E+ F+V+ML+K
Sbjct: 61 DNKVTEDGFLVVMLSK 76
>gi|449676312|ref|XP_002169219.2| PREDICTED: UV excision repair protein RAD23 homolog B-like [Hydra
magnipapillata]
Length = 343
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 141/291 (48%), Gaps = 53/291 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F +EV D VF +K I +GS+ +P Q LIY GK+L DD L
Sbjct: 1 MLITLKTLQQKTFKIEVDENDKVFALKELIAKEKGSE-FPIECQRLIYSGKILDDDKALC 59
Query: 62 ENKVA-ENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + +FVV+M K K T +G S + PQ + + T ++ P+ T
Sbjct: 60 EYNIDPVKNFVVVMSVKPKVVTKDGDKSSGVGSSTPQVES---TVSMETVQPSSTPLLTS 116
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
A S + ++VS+ + G ++ + G+ L+ +I +++ +G + R+ V+
Sbjct: 117 TASASETTSVSTTSTAVSSQPDIG------TSFLTGSALDSSINELMSLG---FSREQVL 167
Query: 181 RALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
RAL+ ++ N +RA EYL SG +PE E APG+
Sbjct: 168 RALQRSFQNADRAAEYLLSGNVPELVE-----DAPGD----------------------- 199
Query: 240 PNANPLDLFPQGLP-DVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
+D + LP DVG+ G L+FLR+ PQF+++R+ VQ +P P
Sbjct: 200 -----IDEESEALPADVGA----EGDLNFLRDFPQFRMMRSQVQRHPDTLP 241
>gi|154292520|ref|XP_001546834.1| nucleotide excision repair protein RAD23 [Botryotinia fuckeliana
B05.10]
gi|347836511|emb|CCD51083.1| similar to UV excision repair protein (RadW) [Botryotinia
fuckeliana]
Length = 376
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 137/298 (45%), Gaps = 60/298 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P + V DVK KI +G + A+QQ LIY GK+L+D TLE
Sbjct: 1 MKLTFKDLKQQKFVLEAEPTELVSDVKEKIFKEKG---WEASQQKLIYSGKILQDANTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP----QTAVPI 117
+ E F+V M+TK K S T AP S+A TAVP
Sbjct: 58 SYHIEEKGFIVCMITKPKAAPAASSAPKAPSTPAPASAATPAPPAAPAHSSSTSNTAVPA 117
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
TP+PA AS+ + AT + G L G I ++ MG ++R
Sbjct: 118 --------TPSPAGASIPAPQATPSNETTG-----LAMGAERSAQIAEMESMG---FERS 161
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQ--AEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
+ A+RAA+ N ERA+EYL +GIPE+ E QP AP QA++ P
Sbjct: 162 QIEAAMRAAFYNSERAIEYLLNGIPERLLQEQQPTPAAPAAVQASSPP------------ 209
Query: 236 TSSGPNANPLDLFPQGLPDVGS-GAAGAG--------------------SLDFLRNSP 272
++G +P+DLF Q + G+ G A G +LDFLRN+P
Sbjct: 210 -AAGGEDDPVDLF-QAAANAGNRGGAARGRPGVDPLGGAGAGAAAGGLGNLDFLRNNP 265
>gi|391330987|ref|XP_003739932.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Metaseiulus occidentalis]
Length = 336
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 131/288 (45%), Gaps = 55/288 (19%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
++ + VK L F +E+ + TV D+K KI ++G+ +PA Q LI QG+++ D +
Sbjct: 2 LLTVNVKCLTNELFTIEIDDDCTVKDMKEKISEIKGA-AFPAVHQKLIAQGRIMADQDKV 60
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+ + FVVIM++K G+ A T+ P + A A P +P+ +
Sbjct: 61 KTYDLKSVKFVVIMVSK----PATGAQPGAASTEQPAAPAAAAEAKPVESPEE------K 110
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P A TP S ++ S S +G S LV G + ++ I +MG + +D V
Sbjct: 111 PKEAGTPTATRPSTTTPSTDSSAG----NESTLVVGEQYKQMVESITEMG---YPQDQVE 163
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRA+YNNP+RAVEYL +G P + E A P P QP
Sbjct: 164 RALRASYNNPDRAVEYLVTGFPPEEEEARAAENPR------------APRQP-------- 203
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
GA G L FLRN PQFQ +R ++ NP L
Sbjct: 204 -----------------GAGTQGDLSFLRNQPQFQQMRNAIRDNPALL 234
>gi|170092959|ref|XP_001877701.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647560|gb|EDR11804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 378
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 6/207 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +KT + F +E+ DT+ +K KI+ QG +P A Q +IY GK+L +D T++
Sbjct: 1 MKITIKTTQQKVFQIEIDTSDTIAVLKDKIQESQG---HPTAAQKIIYSGKILSNDKTID 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V+M++K K ++ S+AP ++P + T P+
Sbjct: 58 SCGIKEKDFLVLMVSKPKPTPAATASTSSAPQDVQMDTSPPAPPAAPPSSSTPAPVLVSD 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T + T A+ + +A S ++G L+ AI + +MG + RD V+R
Sbjct: 118 TTSVTQPTTPAATPAATAPPAVAPAFGDMSTFLSGEALQSAITNMTEMG---FPRDQVLR 174
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A+RA+YNN +RAVEYL +GIP E +
Sbjct: 175 AMRASYNNADRAVEYLMTGIPAHLEAE 201
>gi|453087458|gb|EMF15499.1| UV excision repair protein Rad23 [Mycosphaerella populorum SO2202]
Length = 392
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 146/312 (46%), Gaps = 44/312 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P +T+ VK KI +G D P+ Q+ LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSETIGAVKGKISAEKGWD--PSTQK-LIYSGKILQDDNTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E F+V M +K K A TK + + P AAT AP A +T
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------AAATKPAEPATPAKAATSTPAPPAAPAHTTSS 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P P+ A S+ ++ E +A L G AI + MG + RD +
Sbjct: 108 TSQPPATPSPAPASASASNEERSFNDPSA--LAMGEQRAAAIAGMEAMG---FARDQIDA 162
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RAVEYL +GIPE + Q A + Q A + Q P T A T +
Sbjct: 163 AMRAAFFNPDRAVEYLLNGIPE-SARQEQRAAAASPQPAPTQGQQPADTAGAETTQQQAS 221
Query: 242 ANPLDLFPQGLPDVGSGAAG-------------------------AGSLDFLRNSPQFQV 276
P++LF G G G + LDFLRN+PQFQ
Sbjct: 222 DEPVNLFEAAAQAGGGGRGGAGGRGAGDLGALGGGRGGAQGGQTESSQLDFLRNNPQFQQ 281
Query: 277 LRAMVQANPQLF 288
LR +VQ PQ+
Sbjct: 282 LRTVVQQQPQML 293
>gi|260945185|ref|XP_002616890.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
gi|238848744|gb|EEQ38208.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 134/286 (46%), Gaps = 42/286 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ K LK + V V+P D V K K+ DV P+ Q +Y GKVL+DD T +
Sbjct: 1 MQVTFKDLKKQTVQVSVEPSDLVRVGKEKV--AAARDVDPS-QLKFVYSGKVLQDDKTFD 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E KV E ++ M+++ K+ AP + SAP+ T P+TA S+
Sbjct: 58 EFKVKEGDSIIFMISQ-KKSPAPAPAPVAAPAASEAVSAPSEPETSTQTPETA---SSTA 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A TPA ++S+ +G + E AIQ +++MG ++R + R
Sbjct: 114 ANASTPA--------------------SSSDFASGQDREAAIQNMMEMG---YERPQIER 150
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+NNP RAVEYL +GIPE + RA QA P + Q S
Sbjct: 151 ALRAAFNNPHRAVEYLITGIPE-----ALTRAEQPPQAQEEPAAHAE-AQTEHEDESNQE 204
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
AN + + DV AAG + + + +LRA +Q+ P+L
Sbjct: 205 AN----VHENMFDVAEAAAGDEPVPAQED--RLALLRAAIQSEPEL 244
>gi|50550853|ref|XP_502899.1| YALI0D16401p [Yarrowia lipolytica]
gi|49648767|emb|CAG81090.1| YALI0D16401p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 51/300 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + ++ K + V+V+P DTV +K K +G D Y Q +IY GK+L + T++E
Sbjct: 1 MLVKLRDTKRQQWTVDVEPSDTVETLKTK--NAEGKD-YGVGDQKMIYSGKILANTTSIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--TPATAPQTAVPIS- 118
+ E++F++ M++K K + + AP A ++A A TPAT+ A P +
Sbjct: 58 SLNLKEDAFIICMISKPKVKAAAAAPAAAAPVAAAPAAAEPAVAPVTPATSRSVATPGAP 117
Query: 119 ------TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGG 172
T PT A AS + +ESG A + + AI ++DMG
Sbjct: 118 TNSGNVVGNTETPTTGGADASTTG-DIGAESGPAASATAAVTT------AINNMVDMG-- 168
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
+ RD V A+RAAYNNPERAVEYL +GIP+ G+ A+
Sbjct: 169 -YPRDQVEAAMRAAYNNPERAVEYLLTGIPDHV----------IGEEADDDV-------- 209
Query: 233 APVTSSGPNAN-PLDLFPQGLPDVGSGAAGA---GSLDFLRNSPQFQVLRAMVQANPQLF 288
P +N DLF + + G GA+ A +LDFLR++PQF +R MVQ P L
Sbjct: 210 -------PESNTDTDLFAEAVAQQGQGASVAPNTSALDFLRDNPQFIEMRRMVQQQPHLL 262
>gi|388580050|gb|EIM20368.1| UV excision repair protein Rad23 [Wallemia sebi CBS 633.66]
Length = 336
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 100/212 (47%), Gaps = 48/212 (22%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M ++ +KTL+ F V V+ DT+ +K KIE QG + Q LI+ GK+L DD T+
Sbjct: 1 MPEVTIKTLQQKVFKVVVEDSDTIATLKQKIEADQG---FAVNTQKLIFSGKILADDRTI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E ++ E F+V+M++K K PQ A P E
Sbjct: 58 ESLQIKEKDFLVVMVSKPK-------------------------------PQPATPKKDE 86
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAAS--------NLVAGNNLEGAIQQILDMGGG 172
A PA S A+S NL G+ LE A+ +++MG
Sbjct: 87 ---AKVEQPAQKSEQPEQPEQPQQTQQPASSSTPSQPGNNLAMGSELETAVSNMVEMG-- 141
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204
+DR V++A+RA++NNPERAVEYL +GIP+
Sbjct: 142 -FDRAQVMKAMRASFNNPERAVEYLMTGIPQH 172
>gi|313224970|emb|CBY20762.1| unnamed protein product [Oikopleura dioica]
Length = 352
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 139/293 (47%), Gaps = 55/293 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSD---VYPAAQQMLIYQGKVLKDDT 58
M++ VKTL+ +F VE +P V D K IE SD VY A Q LIYQGK+L+D+
Sbjct: 1 MQLTVKTLQQKAFKVEAEPSILVKDFKALIEEAGKSDHGGVYKAEAQKLIYQGKILEDEK 60
Query: 59 TLEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
+EE ++ E F+V+M+TK K + AP ++A T ++TPA + + +
Sbjct: 61 KIEEYQITEKGFIVLMVTKPKVVPKPVEPKPEPTPAAPAAAASTESSTPAESTSSTDATT 120
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P T A A V H A NL+A MG +
Sbjct: 121 TPSQPVATEAAAP-------------VNPHVA-NLMA-------------MG---FPESQ 150
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V +AL AA+NNPERAVEYL +GIPE+ Q T P+ + T++
Sbjct: 151 VKQALSAAFNNPERAVEYLMNGIPEELLAQ--------------MTTTPEAAAASAGTTA 196
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
+A P P VGS +L+ +RN PQFQ +R +++ NPQL F
Sbjct: 197 DASAAPTVTAPSR--SVGS------TLEQIRNEPQFQQIRTLIRNNPQLLSQF 241
>gi|402588417|gb|EJW82350.1| UV excision repair protein Rad23 [Wuchereria bancrofti]
Length = 190
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 99/208 (47%), Gaps = 39/208 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + KT+ SF++E+ P T+ +VK KI +G YP Q LIY GKVL D T+E
Sbjct: 1 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA--ATPATAPQTAVPIST 119
E + + FVV+M+ + K P AP S P P+ PA A T P+S
Sbjct: 61 EVMIDPSKFVVVMIARKK------------PIGAPVESTPQPSNLQIPAGAQATTAPVSV 108
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ TP S T+ Q I+ MG + RD V
Sbjct: 109 ADSGPSTPQNPDGLTSEQEETA----------------------QAIVAMG---YPRDKV 143
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEV 207
+RALRA++ N +RAVEYL SGIPE+ ++
Sbjct: 144 IRALRASFFNGDRAVEYLCSGIPEEEDL 171
>gi|50412599|ref|XP_457143.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
gi|49652808|emb|CAG85137.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
Length = 373
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 130/298 (43%), Gaps = 43/298 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I K K +EV DTV K K+ + + +V +Q +Y GKVL+D+ TLE
Sbjct: 1 MQIIFKDFKKQKIPIEVDLSDTVLATKEKLASEKDCEV---SQLKFVYSGKVLQDEKTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E ++ M++K K+ ++ + P KA + ++ +AT TE
Sbjct: 58 SFKIKEGDSIIFMISKAKK-----ASPAPGPAKAEEKTSTDASAT------------TES 100
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T A + A++ S+ SE G S G++ E IQ I++MG ++R +
Sbjct: 101 TNASSTPAAASGASTNQQGSEPG------SAFAQGDDREATIQNIMEMG---YERPQIEE 151
Query: 182 ALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
ALRAA+NNP RAVEYL +GIPE Q AP N+ + + G
Sbjct: 152 ALRAAFNNPHRAVEYLLTGIPESLQRHADQSTSAPIGESTTNTTNDHEEEHEHDHEGEEG 211
Query: 240 PNANPLDLFPQGLPDVGSGAAG---------AGSLDFLRNSPQFQVLRAMVQANPQLF 288
N LF G G D L Q ++LR +Q NP+L
Sbjct: 212 QGEN---LFEAAAAAAAQGEGGNTTSGAGGAEAGADDLGEDNQMRLLRTALQTNPELI 266
>gi|389741638|gb|EIM82826.1| UV excision repair protein Rad23 [Stereum hirsutum FP-91666 SS1]
Length = 395
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 17/207 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTL+ F ++ + +TV D+K KI +QG +P Q +IY GKVL DD T+E
Sbjct: 1 MKITVKTLQQKVFQLDAEGSETVGDLKKKINDLQG---HPVENQKIIYSGKVLPDDKTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V+M++K K S+ + AP+ + TP PAT A +
Sbjct: 58 SCNIKEKDFLVLMVSKPKATPAASSSTAAAPSTPAAPAPSTPQPAPATPAAPAPAPAAAA 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A TPAPA+ +G +S + GN L+ +IQ +++MG + RD V+R
Sbjct: 118 PAATTPAPAATPAQ----------FGDMSS-FLTGNALQSSIQNMVEMG---FPRDQVLR 163
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A+RA+YNNP+RAVEYL +GIPE + +
Sbjct: 164 AMRASYNNPDRAVEYLMTGIPEHLQAE 190
>gi|440796341|gb|ELR17450.1| Rad23, putative [Acanthamoeba castellanii str. Neff]
Length = 393
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 129/286 (45%), Gaps = 24/286 (8%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+K+ +KT++ F+VEV TV DVK K+E ++ +V A Q LI+ GK+L DD +
Sbjct: 1 MLKVQIKTIQQQQFEVEVPDTATVLDVKKKVEALRSENV---AWQKLIFAGKILADDAKI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+ F+V+M+ K P +A + A A A T +
Sbjct: 58 NTLNIKPTEFLVLMVRK--------------PKEA--NVAAPAPAAQPAAAATPAQPTQT 101
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P P A+ +S + AAS LV G++ E + I++MG + R+ V+
Sbjct: 102 AAPTPATPAAAEPPRPAQPSSGGSIESEAASALVTGSDFEAMVSNIMEMG---FPREEVL 158
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRA++NNP RAVEYL +GIP+ P + A A + + P
Sbjct: 159 RALRASFNNPNRAVEYLMTGIPDMPAQAPASPAAERAAAPAAGGEGAAEPGSPPAAGGEG 218
Query: 241 NANPLDLFPQGLPDVGSGAAG--AGSLDFLRNSPQFQVLRAMVQAN 284
P L G G G ++LR PQF ++AMVQ N
Sbjct: 219 AGEGGISLPSNLLGALMGQQGGAGGHFEWLRQHPQFNQIKAMVQRN 264
>gi|407926704|gb|EKG19665.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 383
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P +T+ DVK KI +G + A +Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETIADVKAKISAEKG---WEADKQKLIYSGKILQDDKTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M+ K K A +++ TPA PA A ST
Sbjct: 58 SYNIEEKGFIVCMIQKPK---------PQPAASASKAAPSTPAREPAQA-------STPS 101
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAA------SNLVAGNNLEGAIQQILDMGGGTWD 175
PA + AP+S ++ S + S+L G E AI + MG +
Sbjct: 102 APAQSSAPSSNVPATPSPAPAAPQAAGTPQQFNNPSSLTMGPEREAAIANMESMG---FP 158
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQA 205
R + RA+RAAY NP+RAVEYL +GIPE A
Sbjct: 159 RADIDRAMRAAYFNPDRAVEYLLTGIPESA 188
>gi|317138690|ref|XP_001817078.2| UV excision repair protein rhp23 [Aspergillus oryzae RIB40]
gi|391863231|gb|EIT72542.1| nucleotide excision repair factor NEF2, RAD23 component
[Aspergillus oryzae 3.042]
Length = 378
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 140/291 (48%), Gaps = 40/291 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P +TV VK KI +G +V Q LIY GK+L+DD +E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K S+ + P++AP TP+ + P +
Sbjct: 58 SYNIEEKGFIVCMVSKPK-----ASSSTATPSQAPS----TPSRAATSTPAAPPAPAPST 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ T PA+ S ++ + S++ + S L++G+ E I + MG + RD + R
Sbjct: 109 NASATAPPATPSPAAATQPSDAAF--NDPSALLSGSQGEAVISHMESMG---FPRDDINR 163
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP RA+EYL +GIPE + + + A + PQP P S+G N
Sbjct: 164 AMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAAS-PQP----PAASAGGN 218
Query: 242 A-------NPLDLF-----------PQGLPDVGSGAAGAGSLDFLRNSPQF 274
A P++LF P G + G +LDFLRN+P F
Sbjct: 219 APATTGGEEPVNLFEAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNNPHF 269
>gi|219112521|ref|XP_002178012.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 434
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 124/287 (43%), Gaps = 66/287 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG F++ + TV DVK IE + A LI+ GKVLKD+ ++
Sbjct: 1 MKLLVKTLKGEKFEIHAEESQTVADVKGIIEATKSE--LSAGTLKLIHSGKVLKDEDSIA 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ EN F+V+M+TK K+P A PAATP P
Sbjct: 59 SAGIKENDFLVVMVTKAKKPV-----------------AAKPAATPT------------P 89
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA TP P A+ +S+ + + AA + E A+ + MG + V
Sbjct: 90 VPAATPGPPVAAAASIETPAPTAAATPAAPTRADDVSAE-AVANLTSMG---FPEAEVKH 145
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
LRAA+ NP+ AVE+L +GIPE G +AA + + A SS +
Sbjct: 146 CLRAAHGNPDIAVEFLTNGIPE-----------GVAEAAAAMNTSAVTSPSASSESSSGS 194
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
PL LRN PQF LR +VQ+NPQ+
Sbjct: 195 GQPLQ--------------------ALRNHPQFNDLRRLVQSNPQML 221
>gi|395333137|gb|EJF65515.1| UV excision repair protein Rad23 [Dichomitus squalens LYAD-421 SS1]
Length = 396
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 113/211 (53%), Gaps = 18/211 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTL+ F ++ + DTV D+K KI+ QG + Q LIY GKVL D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVGDLKRKIQETQG---HALESQKLIYSGKVLPDSKTVE 57
Query: 62 ENKVAENSFVVIMLTK------NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV 115
++ E F+V+M++K N P G+ + AP A + AT +
Sbjct: 58 SCEIKEKDFLVLMVSKPKPAPSNAPPVTSGAPVAAAPPAAAAPAPVP-QATSSATALAPA 116
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
P + +P AP PA A+ +A +G + + G L+ + +++MG ++
Sbjct: 117 PAAPQPPNAPILTPAQAAPIEGAAPVPAG-----DGSFLTGEALQSTVNNMIEMG---FE 168
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
R+ V+RALRA++NNPERAVEYL++GIP E
Sbjct: 169 REQVMRALRASFNNPERAVEYLFNGIPAHLE 199
>gi|440633766|gb|ELR03685.1| UV excision repair protein Rad23 [Geomyces destructans 20631-21]
Length = 397
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 119/237 (50%), Gaps = 19/237 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P + + DVK KIE +G + AAQQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPTELISDVKAKIEKEKG---WEAAQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS---APTPAATPATAPQTAVPIS 118
K+ E F+V M++K K + + A S+ P P + T +P
Sbjct: 58 SYKIEEKGFIVCMVSKPKPAPAAAAPKEPATPAPAASTSTPVPPPVVASNSGTNTGIP-- 115
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
TP+PA A VS+ A + + + S L G A+ + MG ++R +
Sbjct: 116 ------STPSPAGAGVSATPAPAPAQPQFNDPSALTIGAQRAEAVANLESMG---FERAS 166
Query: 179 VVRALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPA 233
+ A+RAA+ NP+RAVEYL +GIPE Q E +P A A S Q P P QPA
Sbjct: 167 IDAAMRAAFFNPDRAVEYLLNGIPEDLQREQRPAAPQAAAPAAGASDAQSPPPAQPA 223
>gi|134107453|ref|XP_777611.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260305|gb|EAL22964.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 404
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 109/200 (54%), Gaps = 11/200 (5%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+KI KT++ F V+ + DTV D+K KI+ Q +P Q LIY GK+L D +++
Sbjct: 1 MVKITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E K+ E F+V+M+++ + + AP+ + A + A+ A A
Sbjct: 58 ESLKIKEKDFLVVMVSRATPAATPAAPATPAPSTPAPAPAASEQASVANPAVPAPSAPAA 117
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+ + +A + SA ESG+ G + V G L+ AI +++MG ++RD V+
Sbjct: 118 ESAPASAPAPAAESAQPSAV-ESGLGG----SFVTGPALQAAIDGMVEMG---FERDQVI 169
Query: 181 RALRAAYNNPERAVEYLYSG 200
RALRA++NNP+RAVEYL SG
Sbjct: 170 RALRASFNNPDRAVEYLMSG 189
>gi|356498318|ref|XP_003518000.1| PREDICTED: uncharacterized protein LOC100787330 [Glycine max]
Length = 159
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 5 FVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENK 64
F TLKGT F V+V P DTV DVK IE QG DVYP AQ+MLI+QGKVLKD TTLEENK
Sbjct: 48 FEVTLKGTHFVVQVNPRDTVADVK-NIEIAQGVDVYPGAQRMLIHQGKVLKDATTLEENK 106
Query: 65 VAENSFVVIMLTK 77
V E++ VVIML+K
Sbjct: 107 VVEDNSVVIMLSK 119
>gi|354546648|emb|CCE43380.1| hypothetical protein CPAR2_210250 [Candida parapsilosis]
Length = 399
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 120/226 (53%), Gaps = 28/226 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I K K + ++V+ D+V K K+ + D P+ Q L+Y GKVL+DD TLE
Sbjct: 1 MQIIFKDFKKQTIPIDVELNDSVSSAKEKL--AKEKDCTPS-QIKLVYSGKVLQDDKTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP--QSSAPTPAATPATAPQTAV-PIS 118
E K+ E + ++ M++K K PT AP + A AA+ +T T V P
Sbjct: 58 ECKLKEGASIIFMISKAKE----------TPTPAPVSSTPAAEAAASASTGDSTKVEPAG 107
Query: 119 TEPT-PAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
+ PT PA + A+ ++ SA +E+ + S G+ E IQ I++MG ++R
Sbjct: 108 STPTVPAAPTSGAATNIEGESAPTET-----SESTFALGSERETTIQNIMEMG---YERP 159
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAP-GNGQAA 220
V ALRAA+NNP RAVEYL SGIPE Q PVA A G+G A
Sbjct: 160 QVEAALRAAFNNPHRAVEYLISGIPESLQRPSAPVASAATGSGSGA 205
>gi|327292408|ref|XP_003230903.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
gi|326466939|gb|EGD92392.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
Length = 365
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 132/276 (47%), Gaps = 61/276 (22%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
VK KI T +G +PA+QQ LIY GK+L+DD T+E + E F+V M++K K +
Sbjct: 11 VKEKIATEKG---WPASQQKLIYSGKILQDDNTVESYNIEEKGFIVCMVSKPKAAPSASA 67
Query: 87 TRSTAPTKAPQS-------SAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSA 139
S+ A S SAPT A+ PA+ TPA TP+PA +
Sbjct: 68 ASSSQTPAAAPSAPAPITPSAPTRASAPASE-----------TPA-TPSPAGGA------ 109
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
SG + S L+ GN + AI Q+L MG + R + RA+RAAY NP+RA+EYL +
Sbjct: 110 --SSGATFNDPSALLMGNQGQEAITQMLAMG---FSRGDIDRAMRAAYFNPDRAIEYLLN 164
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQ--------- 250
GIPE++E + + G AA T +P+ A V S L+LF Q
Sbjct: 165 GIPEESEREAPSAPAAAGGAARPSTTSEEPSD-AQVQES------LNLFEQAAAQASGGG 217
Query: 251 ------------GLPDVGSGAAGAGSLDFLRNSPQF 274
G A GSL+FLRN+P F
Sbjct: 218 GARGRGAGAGAGAGAGAGETAGSLGSLEFLRNNPHF 253
>gi|357504017|ref|XP_003622297.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497312|gb|AES78515.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 697
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 570 VMKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTL 629
Query: 61 EENKVAENSFVVIMLTK 77
+N+V+E+ F+V+ML+K
Sbjct: 630 ADNEVSEDGFLVVMLSK 646
>gi|296816959|ref|XP_002848816.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
gi|238839269|gb|EEQ28931.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
Length = 377
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 111/205 (54%), Gaps = 20/205 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P + + DVK KI +G +P +QQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKGKIAMEKG---WPPSQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K P+ ++ S P P + P + P A TA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAPSASAASSSQTPAIPPSAPTPATPSAPTRANVTA-----SE 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TPA TP+PA + SG + S L+ GN + AI Q+ MG + R + R
Sbjct: 113 TPA-TPSPAGGAG--------SGATFNDPSALLMGNQGQEAIAQMEAMG---FSRSNIDR 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAE 206
A+RAAY NP+RA+EYL +GIP++ E
Sbjct: 161 AMRAAYFNPDRAIEYLLNGIPDEPE 185
>gi|320041049|gb|EFW22982.1| UV excision repair protein [Coccidioides posadasii str. Silveira]
gi|392865203|gb|EAS30978.2| UV excision repair protein Rad23 [Coccidioides immitis RS]
Length = 371
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 129/285 (45%), Gaps = 37/285 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +T+ +K KI +G D AAQQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K P P S P + P P
Sbjct: 58 SYNIEEKGFIVCMVSK--------------PKAQPAPSTPAGPSQTPATPAAPSSTPAAP 103
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ A ++ + + + +G + S L+ G E A+QQ+ MG + RD + R
Sbjct: 104 SAPAPATNAPSAPPATPSPATAGATFNDPSALLMGPQSETAVQQMEAMG---FARDDIQR 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RA+EYL SGIP+ AE + + +N+ TQPA T S
Sbjct: 161 AMRAAFFNPDRAIEYLLSGIPDHAEQEAARQQARATAPSNAAAPA--STQPAANTES--- 215
Query: 242 ANPLDLFPQGLPDVGSGAAGA------------GSLDFLRNSPQF 274
P++LF G +L+FLRN+P F
Sbjct: 216 EEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLNNLEFLRNNPHF 260
>gi|357504019|ref|XP_003622298.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497313|gb|AES78516.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 416
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 289 VMKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTL 348
Query: 61 EENKVAENSFVVIMLTK 77
+N+V+E+ F+V+ML+K
Sbjct: 349 ADNEVSEDGFLVVMLSK 365
>gi|124359456|gb|ABN05900.1| Ubiquitin [Medicago truncatula]
Length = 674
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 547 VMKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTL 606
Query: 61 EENKVAENSFVVIMLTK 77
+N+V+E+ F+V+ML+K
Sbjct: 607 ADNEVSEDGFLVVMLSK 623
>gi|401626135|gb|EJS44097.1| rad23p [Saccharomyces arboricola H-6]
Length = 401
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 142/306 (46%), Gaps = 49/306 (16%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+F+ K K+ + +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTIFEAKTKLAQTASCE---ESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPT-PAATPATAPQTAVPIST 119
E + + VV M+++ KR T T+ T P AP+++A T P +T P + ST
Sbjct: 58 SECGLKDGDQVVFMISQ-KRST---KTKVTEPPIAPETAATTNPVRDDSTEPAS---TST 110
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAAS-NLVAGNNLEGAIQQILDMGGGTWDRDT 178
+ A T A S TS + G A++ V G I++I++MG + R+
Sbjct: 111 DAPTAETSTAAEGSQPQEEQTSTTEPAGSASTPGFVVGTQRNETIERIMEMG---YPREE 167
Query: 179 VVRALRAAYNNPERAVEYLYSGIPE---QAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
V RALRAA+NNP+RAVEYL GIPE Q + Q A A N Q A + T QP +
Sbjct: 168 VERALRAAFNNPDRAVEYLLMGIPENLRQPDPQQQAVA-ANEQPATAATTTEQPAED--- 223
Query: 236 TSSGPNANPLDLFPQ----------GLPDVGSGAAGA-----GSLDFLRNSPQFQVLRAM 280
DLF Q L VGS A A GS+ LR +
Sbjct: 224 ----------DLFAQAAQGGNTSSGALGSVGSAADAAQGGPPGSIGL--TVEDLLSLRQV 271
Query: 281 VQANPQ 286
V NP+
Sbjct: 272 VSGNPE 277
>gi|303319113|ref|XP_003069556.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109242|gb|EER27411.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 371
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 129/285 (45%), Gaps = 37/285 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +T+ +K KI +G D AAQQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K P P S P + P P
Sbjct: 58 SYNIEEKGFIVCMVSK--------------PKAQPAPSTPAGPSQTPATPAAPSSTPATP 103
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ A ++ + + + +G + S L+ G E A+QQ+ MG + RD + R
Sbjct: 104 SAPAPATNAPSAPPATPSPATAGATFNDPSALLMGPQSETAVQQMEAMG---FARDDIQR 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RA+EYL SGIP+ AE + + +N+ TQPA T S
Sbjct: 161 AMRAAFFNPDRAIEYLLSGIPDHAEQEAARQQARATAPSNAAAPA--STQPAANTES--- 215
Query: 242 ANPLDLFPQGLPDVGSGAAGA------------GSLDFLRNSPQF 274
P++LF G +L+FLRN+P F
Sbjct: 216 EEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLNNLEFLRNNPHF 260
>gi|83764932|dbj|BAE55076.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 403
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 140/292 (47%), Gaps = 40/292 (13%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+ + VK LK F ++ +P +TV VK KI +G +V Q LIY GK+L+DD +
Sbjct: 25 VFNVAVKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAI 81
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + E F+V M++K K S+ + P++AP TP+ + P +
Sbjct: 82 ESYNIEEKGFIVCMVSKPK-----ASSSTATPSQAPS----TPSRAATSTPAAPPAPAPS 132
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+ T PA+ S ++ + S++ + S L++G+ E I + MG + RD +
Sbjct: 133 TNASATAPPATPSPAAATQPSDAAF--NDPSALLSGSQGEAVISHMESMG---FPRDDIN 187
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+ NP RA+EYL +GIPE + + + A + PQP P S+G
Sbjct: 188 RAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAAS-PQP----PAASAGG 242
Query: 241 NA-------NPLDLF-----------PQGLPDVGSGAAGAGSLDFLRNSPQF 274
NA P++LF P G + G +LDFLRN+P F
Sbjct: 243 NAPATTGGEEPVNLFEAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNNPHF 294
>gi|357504021|ref|XP_003622299.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497314|gb|AES78517.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 398
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 271 VMKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTL 330
Query: 61 EENKVAENSFVVIMLTK 77
+N+V+E+ F+V+ML+K
Sbjct: 331 ADNEVSEDGFLVVMLSK 347
>gi|410079523|ref|XP_003957342.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
gi|372463928|emb|CCF58207.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
Length = 379
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 23/202 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I K K VE++ T+ D K K+ +++ D+ Q LI+ GKVLKDD T+
Sbjct: 1 MNIIFKDFKKEKIPVELESSSTILDAKNKLASIKSCDI---DQIKLIFSGKVLKDDQTVS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ +N V++M++K K + +T T+ PQ S P P S E
Sbjct: 58 SCGLKDNDQVIMMISKKK-----ATPSATKVTEPPQQSEEQPVQEP----------SQEQ 102
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+ T A + + +E + V G+ +++I++MG ++RD V R
Sbjct: 103 EPSGTTAEPAPIAPAAPVAAEPE--STSTPGFVTGSERNETVERIMEMG---YERDQVER 157
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
ALRAA+NNP+RAVEYL GIPE
Sbjct: 158 ALRAAFNNPDRAVEYLLMGIPE 179
>gi|261197590|ref|XP_002625197.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|239595160|gb|EEQ77741.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|327354300|gb|EGE83157.1| nucleotide excision repair protein RAD23 [Ajellomyces dermatitidis
ATCC 18188]
Length = 386
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 109/207 (52%), Gaps = 14/207 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +TV VK KI +G DV AQQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + S+ P AP A+TP TAP P S P
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAPSTSAAASSQAPSTP---APVAASTP-TAP---APRSN-P 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T + PA S + + + + S L+ G E I Q+ MG + R + R
Sbjct: 110 TTSDAPATPSPAAPAAAPAVGGAATFNDPSALLMGPQGEQVIAQMESMG---FPRSDIDR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A+RAA+ NP+RA+EYL +GIPE ++ +
Sbjct: 167 AMRAAFFNPDRAIEYLLNGIPETSQAE 193
>gi|259487698|tpe|CBF86570.1| TPA: UV excision repair protein (RadW), putative (AFU_orthologue;
AFUA_5G06040) [Aspergillus nidulans FGSC A4]
Length = 369
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 152/309 (49%), Gaps = 44/309 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++ +P +TV VK KI T +G DV P+ + LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP-TKAPQSSAPTPAATPATAPQTAVPISTE 120
+ E F+V M++K K T P +++P + A + +TPA P A +T
Sbjct: 58 FYNIEEKGFIVCMVSKPK----------TQPSSQSPSTPAKSVTSTPAPPPAPAPSTNTS 107
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T P PA+ S +S A S + S L+ G+ E I Q++ MG ++R+ +
Sbjct: 108 TTATSGPVPATPSPASSGAAQSSASTFNDPSALLTGSQSEEVINQMMSMG---FEREQIN 164
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+ NP+RA+EYL +GIPE + + R+ AA AP +SG
Sbjct: 165 RAMRAAFFNPDRAIEYLLNGIPENIQQEQQQRSAATTPAAPQAAA----ASGAPPATSGE 220
Query: 241 NANPLDLFPQGLPDVGSGAAGAG-------SLDFLRNSPQFQ---------------VLR 278
+ P++LF G SLDFLRN P FQ +L+
Sbjct: 221 D-EPVNLFEAAAQAGEGRGGAGGASGGEPQSLDFLRNHPAFQQLRQLVQQQPQMLEPILQ 279
Query: 279 AMVQANPQL 287
+ Q NPQ+
Sbjct: 280 QVGQGNPQI 288
>gi|295665738|ref|XP_002793420.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278334|gb|EEH33900.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 375
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 128/290 (44%), Gaps = 43/290 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +T+ +K +I +G DV A Q LIY GK+L+D+ T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M+TK K TPAAT + AP T P
Sbjct: 58 SYNIEEKGFIVCMVTKPK--------------------TTTPAATSSQAPSTPAPAVAST 97
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAA------SNLVAGNNLEGAIQQILDMGGGTWD 175
AP PA + + + TS + S L+ G E I Q+ MG +
Sbjct: 98 PAAPAPASNPQTTDAPATTSPAAPAAAGGATFNDPSALLMGPQGEQVIAQMESMG---FP 154
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQ----------AANSPTQ 225
R + RA+RAA+ NP+RA+EYL +GIPE ++ + AP +
Sbjct: 155 RSDIDRAMRAAFFNPDRAIEYLLNGIPETSQAEQREAAPATTAPSGPAAPAATGGDEHVN 214
Query: 226 MPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA-GSLDFLRNSPQF 274
+ + A G QGL G G+ G+LDFLRN+P F
Sbjct: 215 LFEAAAQAGAPQGGGAGRGARATGQGLATAAEGQGGSLGNLDFLRNNPHF 264
>gi|343428884|emb|CBQ72429.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Sporisorium reilianum SRZ2]
Length = 434
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 123/239 (51%), Gaps = 23/239 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +K+L G +F ++ + DT+ +K KI+ QG + Q +I+ GK+L DD T+
Sbjct: 1 MKLLIKSLAGGNFHLDAELTDTIGSIKAKIQKEQG---HAPELQKIIFSGKILTDDKTVA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP----- 116
+ + E F+V+M++K K P + + A + + ++A A A A P
Sbjct: 58 DCNIKEKDFLVVMVSKPKAPKPAAAPAAAAASTSTPAAASAADKPAAAAAPAATPKTDAP 117
Query: 117 --------ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD 168
ST + T AP S A +ES + + + G LE A+Q +++
Sbjct: 118 AAEAAAAAPSTTDASSTTAAP----TESTPAATESQSSSGTSGSFLTGGALESAMQSMME 173
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
MG ++RD V RA+RAA+NNP+RAVEYL +GIPE P A P + AA++ Q P
Sbjct: 174 MG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEHLANPPAAPQPSSTGAASAGEQTP 229
>gi|452846190|gb|EME48123.1| hypothetical protein DOTSEDRAFT_69906 [Dothistroma septosporum
NZE10]
Length = 402
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 127/265 (47%), Gaps = 54/265 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P + + VK KI +G + + Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSEKIGQVKEKISAEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E F+V M +K K +AP+ A P+T A P+ST
Sbjct: 58 SYKIEEKGFIVCMTSKPK-------------------AAPSKPAEPST---PAKPVSTPA 95
Query: 122 TPAPTPAPASASVSS-----------VSATSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
PA A S S S +ATSESG + S L G AI + MG
Sbjct: 96 APAAPQAAQSTSASQPPATPSPAPASTAATSESGNFND-PSALALGEQRTAAIAGMEAMG 154
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYLYSGIP--EQAEVQPVARAPGNGQAANSPT--QM 226
+ RD + RA+RAA+ NP+RAVEYL +GIP Q E +P A +P PT Q
Sbjct: 155 ---FARDQIDRAMRAAFFNPDRAVEYLLNGIPASAQQEERPAAASP-------RPTSNQG 204
Query: 227 PQPTQPAPV---TSSGPNANPLDLF 248
QP PA + T++ P++LF
Sbjct: 205 QQPVAPATIATETAAPSGDEPVNLF 229
>gi|211909006|gb|ACJ12793.1| RAD23-like protein B [Sebastiscus marmoratus]
Length = 277
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 24/173 (13%)
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
E T +PT PAS SV S A++ + + A SNLV G + + + +++ MG ++R+ V
Sbjct: 56 EETQSPTAEPASTSVGSSEASTNTNLIDEAVSNLVTGASYDAMVNEMMLMG---YEREQV 112
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA++NNP+RAVEYL +GIP R P G AA +P PV SG
Sbjct: 113 VAALRASFNNPDRAVEYLLTGIP--------GRDP--GPAAGLDAVVP------PV--SG 154
Query: 240 PNANPLDLFPQGLP-DVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
++ P+ LP + GS +G L FLR+ PQF V+R ++Q N L P
Sbjct: 155 VHSAPIGGI--SLPANTGSSPSGGNPLSFLRSQPQFHVMRQLIQQNAALLPAL 205
>gi|403216612|emb|CCK71108.1| hypothetical protein KNAG_0G00510 [Kazachstania naganishii CBS
8797]
Length = 375
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 139/315 (44%), Gaps = 65/315 (20%)
Query: 1 MMKIFVKTLKGT--SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT 58
M+++ K K + DV+++ E +V DVK K+ + D A Q LI+ GKVL+D
Sbjct: 1 MVQVVFKDFKKNKETLDVDLEHE-SVKDVKEKLAAARDCD---AEQIKLIFSGKVLQDAK 56
Query: 59 TLEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
E + EN V++M++K K PA P P+T
Sbjct: 57 PFAETGLKENDHVIMMVSKKKS---------------------VPAKEPVKEPET----- 90
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
EP A+ + + + S V ++ + V G +++I++MG ++R
Sbjct: 91 -EPVATTETPAATTTEPAPAGAG-SVVADNSTPDFVTGQQRNETVERIMEMG---YERAQ 145
Query: 179 VVRALRAAYNNPERAVEYLYSGIP-EQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAA+NNP+RAVEYL +GIP Q QP + P Q++ SP P QP
Sbjct: 146 VERALRAAFNNPDRAVEYLITGIPAAQPAEQPAEQTPEQAQSSASPEHSEPPEQP----- 200
Query: 238 SGPNANPLDLFPQGLPDVG--SGAAGA------------GSLDFLRNSPQFQVLRAMVQA 283
+ DLF Q L + G +GA G GS+ LR +V
Sbjct: 201 -----HEDDLFAQALGNNGQSAGAEGTPGTPGTASAAPPGSIGL--TVEDLMALREVVSG 253
Query: 284 NPQ-LFPCFKSWGNK 297
NP+ L P ++ N+
Sbjct: 254 NPEALAPLLENLSNR 268
>gi|385306094|gb|EIF50024.1| rad23p [Dekkera bruxellensis AWRI1499]
Length = 421
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 99/202 (49%), Gaps = 18/202 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K K F +EV+P D++ K K+ Q D P Q +Y GK+LKDD T E
Sbjct: 1 MKVIFKNFKKEKFPIEVEPSDSILSGKEKLSAAQ--DCQPG-QLKFVYSGKILKDDKTFE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
V + ++ M +K ++ + + P P++ A A ++ AV S+
Sbjct: 58 FFNVKDGDQIIFMKSKLRK-------QKSKPEPKPEAQAXXGXAE-XSSENAAVESSSTS 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA + + + S +G S G + A+Q I+ MG ++R+ V R
Sbjct: 110 NXXSXPA----QIXAENQESSTGAXEFTESTFAIGRARQTAVQNIMGMG---FEREQVER 162
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
AL AA+NNP+RAVEYL +GIPE
Sbjct: 163 ALTAAFNNPDRAVEYLLNGIPE 184
>gi|353237727|emb|CCA69693.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Piriformospora indica DSM 11827]
Length = 408
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 115/201 (57%), Gaps = 12/201 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +KTL+ F V+V+PE TV +K KI G +P A Q LIY GKVL D ++
Sbjct: 1 MKITIKTLQQKLFTVDVEPEQTVQAIKEKINEEHG---HPVASQKLIYSGKVLDDAKVVK 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V+M++K K ++ + + + + ++ PA PA + A+ +
Sbjct: 58 DCNFKEKDFLVLMVSKAKAAPAASTSAAASSSTSAPAAPAQPAQPPAASTSNAMDATPTT 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T A P PAS S ++ +A S ++ + G+ LE AIQ ++DMG ++R V R
Sbjct: 118 TTASNPQPASESTTAAAAAPGSD------TSFLTGSALETAIQGLMDMG---FERPQVER 168
Query: 182 ALRAAYNNPERAVEYLYSGIP 202
A+RA++NNP+RA +YL++GIP
Sbjct: 169 AMRASFNNPDRAADYLFNGIP 189
>gi|350634058|gb|EHA22422.1| hypothetical protein ASPNIDRAFT_204514 [Aspergillus niger ATCC
1015]
Length = 369
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 111/202 (54%), Gaps = 16/202 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P +TV VK KI +G +V Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K T G T S AP+ ++ TPAA PA AP A P
Sbjct: 58 SYNIEEKGFIVCMVSKPK-ATSSG-TSSQAPSTPSRAVTSTPAAPPAPAPSAASTTPAVP 115
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ TP+PA+A S G + S L++G E + Q+ MG + R V R
Sbjct: 116 S---TPSPAAAGTSQA-----QGSAFNDPSALLSGTQSEAVVAQMEAMG---FARSDVNR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+ NP+RA+EYL +GIPE
Sbjct: 165 AMRAAFFNPDRAIEYLLNGIPE 186
>gi|119182327|ref|XP_001242306.1| hypothetical protein CIMG_06202 [Coccidioides immitis RS]
Length = 418
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 129/286 (45%), Gaps = 37/286 (12%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+ + ++ LK F +E +P +T+ +K KI +G D AAQQ LIY GK+L+D T+
Sbjct: 47 FLSVLLQDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTI 103
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + E F+V M++K P P S P + P
Sbjct: 104 ESYNIEEKGFIVCMVSK--------------PKAQPAPSTPAGPSQTPATPAAPSSTPAA 149
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P+ A ++ + + + +G + S L+ G E A+QQ+ MG + RD +
Sbjct: 150 PSAPAPATNAPSAPPATPSPATAGATFNDPSALLMGPQSETAVQQMEAMG---FARDDIQ 206
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+ NP+RA+EYL SGIP+ AE + + A S P TQPA T S
Sbjct: 207 RAMRAAFFNPDRAIEYLLSGIPDHAEQEAARQQ--ARATAPSNAAAPASTQPAANTES-- 262
Query: 241 NANPLDLFPQGLPDVGSGAAGA------------GSLDFLRNSPQF 274
P++LF G +L+FLRN+P F
Sbjct: 263 -EEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLNNLEFLRNNPHF 307
>gi|444315840|ref|XP_004178577.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
gi|387511617|emb|CCH59058.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
Length = 404
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 18/206 (8%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K +E+ + T+ K +I + + D+ Q LIY GK+LK+D T+
Sbjct: 1 MVSLIFKDFKKEKIPLELDADSTIESAKGQIASEKNCDI---DQIKLIYSGKILKNDATI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGST-RSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
+ + +N ++ M++K K+ T ST + T P + TP ++
Sbjct: 58 LNSGLKDNDHIIFMISKKKKKTEPASTVKVTEPASVTTNVETQAEGTP----------NS 107
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAAS-NLVAGNNLEGAIQQILDMGGGTWDRDT 178
+P+ TP +A+ S+ +A ++ AA V G IQ+I++MG + R+
Sbjct: 108 DPSANATPEVPAATTSNAAAGDDTETTTSAADPGFVVGTERNETIQRIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQ 204
V ALRAA+NNP+RAVEYL GIPE
Sbjct: 165 VEAALRAAFNNPDRAVEYLLMGIPEH 190
>gi|388856731|emb|CCF49691.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Ustilago hordei]
Length = 424
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 21/204 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +K+L G +F ++ + DT+ +K KI+ QG +P Q +I+ GK+L DD T+
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQKEQG---HPPELQKIIFSGKILTDDKTVA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E F+V+M++K K P + + PAA A P +
Sbjct: 58 DCNIKEKDFLVVMVSKPKAPKPAAAADKPVES--------APAAEEANKDDATAPAANTT 109
Query: 122 TPAPTPA-PASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T P S S + T G + + + G LE A+ +++MG + R+ V
Sbjct: 110 ATQSTTTSPISDSTEGQTTT------GGDSGSFLTGGPLESAMSSMMEMG---FQREQVQ 160
Query: 181 RALRAAYNNPERAVEYLYSGIPEQ 204
RA+RAA+NNP+RAVEYL +GIPE
Sbjct: 161 RAMRAAFNNPDRAVEYLMTGIPEH 184
>gi|367007439|ref|XP_003688449.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
gi|357526758|emb|CCE66015.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
Length = 369
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 40/307 (13%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I K K +++ TV K ++ + D +Q LIY GKVL+D ++
Sbjct: 1 MVSILFKDFKKQKISLDLPASSTVLHAKKQLAEQKECD---DSQIKLIYSGKVLQDSNSI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + + V+ M++K K T+ T PT++ + +AP AA+ P++
Sbjct: 58 EGCGLKDGDQVIFMISKKKSTV----TQVTEPTESKEVAAPEVAAS--------APVAES 105
Query: 121 PTPAPTPAPASASVSS---VSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
A APA ++ V+A+++ G V G+ A+ +I++MG ++R+
Sbjct: 106 TETATEAAPAHSTTEGQQPVTASNDPG--------FVVGSQRNEAVDRIMEMG---YERE 154
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAA+NNP+RAVEYL GIP+ +Q + P Q A PT T+ A
Sbjct: 155 EVERALRAAFNNPDRAVEYLLMGIPDH--LQQQQQQPQVTQEAQEPT--SGSTEVAQTAG 210
Query: 238 SGPNANPLDLFPQG----LPDVGSGAAGAGSL--DFLRNSPQFQVLRAMVQANPQ-LFPC 290
+ N DLF Q D +GA+ AGS LR +V NP+ L P
Sbjct: 211 EQGDINEDDLFAQAAQNNATDGSTGASAAGSQPGSIGLTMEDLLALRQIVAGNPEALGPL 270
Query: 291 FKSWGNK 297
++ +
Sbjct: 271 LENLSTR 277
>gi|406866963|gb|EKD20002.1| nucleotide excision repair protein RAD23 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 435
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 101/202 (50%), Gaps = 11/202 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P + + DVK KI +G +V +QQ LIY GK+L+D T+E
Sbjct: 45 MKLTFKDLKQQKFVIEAEPSELISDVKEKITKEKGWEV---SQQKLIYSGKILQDANTVE 101
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E F+V M+TK K S S AP S P +T P
Sbjct: 102 SYKIEEKGFIVCMITKPKPAAATASVASKAP-----PSTPAAPVAASTPAPPPAPAQASA 156
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA S + S +A + S G A S L G + I Q+ +MG ++R +
Sbjct: 157 PAQAVPATPSPAGSGAAAAAISSTPGGATSGLSMGTDRAAQIAQMENMG---FERTQIDA 213
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+ N ERA+EYL +GIPE
Sbjct: 214 AMRAAFYNSERAIEYLINGIPE 235
>gi|58259375|ref|XP_567100.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223237|gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 406
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 107/201 (53%), Gaps = 11/201 (5%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+KI KT++ F V+ + DTV D+K KI+ Q +P Q LIY GK+L D +++
Sbjct: 1 MVKITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E K+ E F+V+M+++ K P + + AP + + A S
Sbjct: 58 ESLKIKEKDFLVVMVSRPKATPAATPAAPATPAPSTPAPAPAASEQASVANPAVPAPSAP 117
Query: 121 PTPAPTPAPASASVSSVSATS-ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ + + + S ++ ESG+ G + V G L+ AI +++MG ++RD V
Sbjct: 118 AAESAPASAPAPAAESAQPSAVESGLGG----SFVTGPALQAAIDGMVEMG---FERDQV 170
Query: 180 VRALRAAYNNPERAVEYLYSG 200
+RALRA++NNP+RAVEYL SG
Sbjct: 171 IRALRASFNNPDRAVEYLMSG 191
>gi|240273069|gb|EER36592.1| pre-mRNA-splicing factor cwc24 [Ajellomyces capsulatus H143]
Length = 826
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 144/289 (49%), Gaps = 44/289 (15%)
Query: 9 LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAEN 68
LK F +E +P +TV VK KI +G DV AQQ LIY GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 69 SFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPA 128
F+V M++K P ST + ++AP + AP A+TPA A + P++++ T P+PA
Sbjct: 505 GFIVCMVSK---PKPAPSTSAGVSSQAPSTPAPAAASTPAAAAHRSNPLTSDITATPSPA 561
Query: 129 PASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 188
+ + +T+ + S L+ G E + Q+ MG + R + RA+RAAY
Sbjct: 562 APVVAPVAGGSTTFND-----PSALLMGPQGEQVVAQMESMG---FPRSDIDRAMRAAYF 613
Query: 189 NPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLD 246
NP+RA+EYL +GIPE QAE + A AP + T P P T++ + ++
Sbjct: 614 NPDRAIEYLLNGIPETTQAEHREAAPAPPATTTPSGSTAAP------PTTAAVGDDEHIN 667
Query: 247 LFP---------------------QGLPDVGSGAAGAGSLDFLRNSPQF 274
LF QGL G G+LDFLR++P F
Sbjct: 668 LFEAAAQAGAPQLGGAGRGARAAGQGLAPPAEG-GNLGNLDFLRSNPHF 715
>gi|225562098|gb|EEH10378.1| nucleotide excision repair protein RAD23 [Ajellomyces capsulatus
G186AR]
Length = 386
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 148/296 (50%), Gaps = 44/296 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +TV VK KI +G DV AQQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K P ST + ++AP + AP A+TPA + P++++
Sbjct: 58 SYNIEEKGFIVCMVSK---PKPAPSTSAGVSSQAPSTPAPAAASTPAAPAHRSNPLTSDI 114
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P+PA A+ + +T+ + S L+ G E + Q+ MG + R + R
Sbjct: 115 TATPSPAAPVAAPVAGGSTT-----FNDPSALLMGPQGEQVVAQMESMG---FPRSDIDR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RAAY NP+RA+EYL +GIPE QAE + A AP + T P P T++
Sbjct: 167 AMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPAPPATTTPSGSTAAP------PTTAAV 220
Query: 240 PNANPLDLFP---------------------QGLPDVGSGAAGAGSLDFLRNSPQF 274
+ ++LF QGL G G+LDFLR++P F
Sbjct: 221 GDDEHINLFEAAAQAGAPQLGGAGRGARAAGQGLAPPAEG-GNLGNLDFLRSNPHF 275
>gi|403418377|emb|CCM05077.1| predicted protein [Fibroporia radiculosa]
Length = 214
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 42/218 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTL+ F ++ + DTV D+K KI+ QG + Q LIY GK+L D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVADLKKKIQDNQG---HTIESQKLIYSGKILPDSKTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPT---GEGSTRSTAPTKAPQSSAPTPAATPATAPQTA---- 114
++ E F+V+M++K K T ++ S A T +P A + +
Sbjct: 58 SCEIKEKDFLVLMVSKPKNVTNLPAASTSTSIAATSSPAPVPAPAPAPQPVSEPPSVPSA 117
Query: 115 -------------VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEG 161
P +P APT A + +++ + G L+
Sbjct: 118 PSPAPQPPNAPILTPAQAQPIAAPTTEQA----------------FNDSNSFLTGEALQS 161
Query: 162 AIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
IQ +++MG ++RD V+RALRA++NNP+RAVEYL++
Sbjct: 162 TIQNMMEMG---FERDQVMRALRASFNNPDRAVEYLFN 196
>gi|148670317|gb|EDL02264.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|148670318|gb|EDL02265.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 344
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 95/208 (45%), Gaps = 35/208 (16%)
Query: 89 STAPTKAPQSSAPTPAAT-----PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
ST P SS P PA PA P P+ T P PA S+ +S S
Sbjct: 53 STTPASTTASSEPAPAGATQPEKPAEKP-AQTPVLTSPAPAD---------STPGDSSRS 102
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 103 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 159
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 160 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 202
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FLRN PQFQ +R ++Q NP L P
Sbjct: 203 PLEFLRNQPQFQQMRQIIQQNPSLLPAL 230
>gi|221055233|ref|XP_002258755.1| dna repair protein rad23 [Plasmodium knowlesi strain H]
gi|193808825|emb|CAQ39527.1| dna repair protein rad23, putative [Plasmodium knowlesi strain H]
Length = 403
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 140/313 (44%), Gaps = 57/313 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI V+TL+ ++ V +DT+ DVK KI P +Q LI+ G +LKD++
Sbjct: 1 MKIKVRTLQNNEEEINVDNDDTILDVKKKIGVAFPE--MPYDKQKLIFSGNILKDESKAM 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + EN V++M K ST + +SS+ + A +++P + +
Sbjct: 59 D-ILKENDIVIVMACK-------KIFSSTKNNQTKESSSKDVIKSNEKA--SSLPPNCDQ 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A + AP + E+ A S LV G L+ I I MG ++R+TV +
Sbjct: 109 NNATSNAPEEGT--------ENRSLNSAESALVTGEKLKETIDNICAMG---FERETVKK 157
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ--PTQPAPVT--- 236
A+ A+NNP RA++YL +G PE+++V + A N+ T M + P P
Sbjct: 158 AMMMAFNNPNRAIDYLTNGFPEESQVNEI-------NAINTITGMNEMNPLNAMPDVNET 210
Query: 237 ----------------SSGPNA----NPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQV 276
NA N L+ + L D SG + A + D R+SP F +
Sbjct: 211 NETNETNETNDNSYEREDNENAPSLPNLLNNY-NSLAD-NSGQSVADTPDQFRSSPFFNI 268
Query: 277 LRAMVQANPQLFP 289
LR + +NPQ P
Sbjct: 269 LRDVALSNPQRIP 281
>gi|156096789|ref|XP_001614428.1| DNA repair protein RAD23 [Plasmodium vivax Sal-1]
gi|148803302|gb|EDL44701.1| DNA repair protein RAD23, putative [Plasmodium vivax]
Length = 406
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 131/316 (41%), Gaps = 60/316 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ V+TL+ ++ V EDT+ DVK KIE P +Q LI+ G +LKD++
Sbjct: 1 MKVKVRTLQNNEEEISVDNEDTILDVKKKIEVAFPE--MPCDKQKLIFSGNILKDESKAV 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + EN V++M K + T+ ++ + A + PA Q
Sbjct: 59 D-VLKENDIVIVMACKKIFSSKNNQTKESSSSSANVLKSKEKTPLPANDDQ--------K 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
APT A +S +A S LV G L+ I I MG ++R+ V +
Sbjct: 110 NAAPTAAEEGG---------QSKNLNNAESALVTGEKLKETIDNICAMG---FEREAVRK 157
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVA--------------------RAPGNGQAAN 221
A+ A+NNP RA++YL +G P++ EV ++ R N
Sbjct: 158 AMMVAFNNPNRAIDYLTNGFPDENEVNEISAINTMNGMNEMGAANAANAMRDVNETNETN 217
Query: 222 SPTQMPQPTQPAPVTSSGPNA-NPLDLFP-------QGLPDVGSGAAGAGSLDFLRNSPQ 273
+ + S PN N L+ + Q +PD S D R+SP
Sbjct: 218 ETNETNDNSYEREDNESAPNLPNLLNNYSALADNPRQSVPD---------STDQFRSSPF 268
Query: 274 FQVLRAMVQANPQLFP 289
F +LR + +NPQ P
Sbjct: 269 FNILRDVALSNPQRIP 284
>gi|452985526|gb|EME85282.1| hypothetical protein MYCFIDRAFT_119289, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 390
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 102/209 (48%), Gaps = 28/209 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F VE +P DT+ VK KI +G + + Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQAKFQVEAEPTDTIGSVKEKISKEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E F+V M +K K P P+K P ATPA + + P
Sbjct: 58 SYKIEEKGFIVCMTSKPKAP----------PSK------PADPATPAKSVASTPAPPAAP 101
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAA-----SNLVAGNNLEGAIQQILDMGGGTWDR 176
T A AS + ++ S S G A S L G AI + MG + R
Sbjct: 102 AQFATSA-ASQAPATPSPAPASTASGDVATFNDPSALAMGEQRAAAIANMEAMG---FPR 157
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQA 205
D + A+RAA+ NP+RAVEYL +GIPE A
Sbjct: 158 DQIDAAMRAAFFNPDRAVEYLLNGIPESA 186
>gi|221481235|gb|EEE19636.1| UV excision repair protein rad23, putative [Toxoplasma gondii GT1]
Length = 348
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 139/313 (44%), Gaps = 63/313 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++TL ++EV E+TV +VK K+E Q PAA+Q L++ GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 62 E-NKVAENSFVVIMLTK-----------------------NKRPTGEGSTRSTAPTKAPQ 97
+ + + EN +V+M+TK + T GS+ + + +
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 98 SS-APTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAG 156
S+ + TP + + + P + PA AS+ S+ ATSE A S L G
Sbjct: 119 SAKSETPGGSGNASGNSGGPAN--------PAHASSPSSAPDATSEGLSRAAAESALFTG 170
Query: 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN 216
LE + ++ MG + R A+RAA+NNP+RAVEYL +G+P + V+ G
Sbjct: 171 PQLEETLTHLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMPPE-----VSAMLGG 222
Query: 217 GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQV 276
A P + + NPL GA LR+ P F
Sbjct: 223 DSAETQEAHGDVPPEEGDAEGDEDDENPL------------GA--------LRHHPAFNQ 262
Query: 277 LRAMVQANPQLFP 289
+R MVQANP + P
Sbjct: 263 IRQMVQANPAMLP 275
>gi|237844371|ref|XP_002371483.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|95007044|emb|CAJ20260.1| DNA repair protein rad23 homolog b, putative [Toxoplasma gondii RH]
gi|211969147|gb|EEB04343.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|221501783|gb|EEE27543.1| UV excision repair protein rhp23, putative [Toxoplasma gondii VEG]
Length = 380
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 139/313 (44%), Gaps = 63/313 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++TL ++EV E+TV +VK K+E Q PAA+Q L++ GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 62 E-NKVAENSFVVIMLTK-----------------------NKRPTGEGSTRSTAPTKAPQ 97
+ + + EN +V+M+TK + T GS+ + + +
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 98 SS-APTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAG 156
S+ + TP + + + P + PA AS+ S+ ATSE A S L G
Sbjct: 119 SAKSETPGGSGNASGNSGGPAN--------PAHASSPSSAPDATSEGLSRAAAESALFTG 170
Query: 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN 216
LE + ++ MG + R A+RAA+NNP+RAVEYL +G+P + V+ G
Sbjct: 171 PQLEETLTHLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMPPE-----VSAMLGG 222
Query: 217 GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQV 276
A P + + NPL GA LR+ P F
Sbjct: 223 DSAETQEAHGDVPPEEGDAEGDEDDENPL------------GA--------LRHHPAFNQ 262
Query: 277 LRAMVQANPQLFP 289
+R MVQANP + P
Sbjct: 263 IRQMVQANPAMLP 275
>gi|70998612|ref|XP_754028.1| UV excision repair protein (RadW) [Aspergillus fumigatus Af293]
gi|66851664|gb|EAL91990.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
Af293]
gi|159126238|gb|EDP51354.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
A1163]
Length = 376
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 144/291 (49%), Gaps = 42/291 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P +TV VK KI +G +V Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K P+ + P++AP S P+ AA A +A S P
Sbjct: 58 TYNIEEKGFIVCMVSKPKAPSS-----AATPSQAP--STPSRAAASTPAAPSAPAPSAAP 110
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ PA S + + + T S + + S L++G+ E I Q+ MG + R + R
Sbjct: 111 SAPAVPATPSPAAPAPAPTDASAAF-NDPSALLSGSQSEAVISQMESMG---FPRSDINR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP----APVTS 237
A+RAA+ NP+RA+EYL +GIP+ + + A + P+P+ P AP ++
Sbjct: 167 AMRAAFFNPDRAIEYLLNGIPDNIQQEQQQ-------QAAAAAAAPRPSAPSGESAPSST 219
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAG--------------SLDFLRNSPQF 274
G P++LF + G+G +LDFLRN+P F
Sbjct: 220 GG--DEPVNLF-EAAAQAGTGEGTGRGARAGAVGAGEGLPNLDFLRNNPHF 267
>gi|320583701|gb|EFW97914.1| Rad23p [Ogataea parapolymorpha DL-1]
Length = 350
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 134/298 (44%), Gaps = 57/298 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ K K +EV+ D+V K K+ +++ + A+Q +Y GKVL+DD T E
Sbjct: 1 MQVIFKDFKKEKIPLEVELSDSVLSAKEKLASLKECE---ASQVKFVYSGKVLQDDKTFE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ EN V+ M++K K + A + ++P AA P P +
Sbjct: 58 NFKIKENDQVIFMISKPK------KAAAAPEPAAKEQASPAGAAAPVAEPAQPAQEGSSA 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TPA AS +G+ E AIQ I+ MG ++R V +
Sbjct: 112 TPA----------------------AFDASTFASGSVRETAIQNIMAMG---FERPQVEQ 146
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
AL AA+NNP+RAVEYL SGIP++ P A G Q + P A T++ P
Sbjct: 147 ALTAAFNNPDRAVEYLLSGIPQRTAEPPAAAQSGEPQTEDQPA--------AEDTNASP- 197
Query: 242 ANPLDLFPQGLPDVGSGAAGA---------GSL-DFLRNSPQF--QVLRAMVQANPQL 287
NP +LF + GS A GSL + L+ P+ VL+ + +NPQL
Sbjct: 198 -NPDNLF-EAAAAAGSQGQDADQQQEGDFMGSLREILQQQPEMAEAVLQQLAASNPQL 253
>gi|365991864|ref|XP_003672760.1| hypothetical protein NDAI_0L00320 [Naumovozyma dairenensis CBS 421]
gi|410729747|ref|XP_003671052.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
gi|401779871|emb|CCD25809.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 20/217 (9%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ DVK ++ + + +Q +IY GKVL+D T+
Sbjct: 1 MVNVIFKDFKKEKIPLDLEPSNTILDVKSQLAQAKACE---ESQIKIIYSGKVLQDGQTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
EE ++ E ++ M++K K + + A Q+ P T A+ T I T
Sbjct: 58 EECQLKEGDQIIFMISKKKSTVTKVTEPPAAAAAQAQAPGANPEITTASNSATPGLIETA 117
Query: 121 P---TPAPTPAPASASVSSVSATSESGVYGH-----------AASNLVAGNNLEGAIQQI 166
TP TP + + +S SA + + +++ V G +++I
Sbjct: 118 AASGTPEGTPQTGNDTTASASANTATDAGAPATTTAATELSPSSAGFVTGTQRNETVERI 177
Query: 167 LDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++MG ++R+ V RALRAA+NNP+RAVEYL GIPE
Sbjct: 178 MEMG---YEREEVERALRAAFNNPDRAVEYLLMGIPE 211
>gi|330912967|ref|XP_003296143.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
gi|311331971|gb|EFQ95765.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
Length = 384
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 133/299 (44%), Gaps = 56/299 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK F +E +P +T+ +K KI+ +G +V QQ LIY GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQADKGWEV---TQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + +++ P + AP A TPA A + +
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPA--AAAASSSRAVPSTPAPVAAQTPAAPSAPAPSSNPQ- 114
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ + S + SG + S L G E AI + MG + R + R
Sbjct: 115 --------NAPATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMG---FARADIDR 163
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RAVEYL +GIPE A Q PT P P ++G
Sbjct: 164 AMRAAFFNPDRAVEYLLTGIPESALQ-----------EQAQQAQARAPTSPTPAGNTGAT 212
Query: 242 A----------NPLDLF-----------PQGLPDVGS-------GAAGAGSLDFLRNSP 272
A P++LF P G GS GA A SLDFLRN+P
Sbjct: 213 AAPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGSAPGATGGGALNANSLDFLRNNP 271
>gi|225679426|gb|EEH17710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 379
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 132/284 (46%), Gaps = 27/284 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +T+ +K +I +G DV A Q LIY GK+L+D+ T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M+TK K +T P A S AP+ + A ++ P
Sbjct: 58 SYNIEEKGFIVCMVTKPK---------TTTPA-ATSSQAPSTPTPAVASTPAAPAPASNP 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P PA ++ + + + + G + S L+ G E I Q+ MG + R + R
Sbjct: 108 QPTDAPATSTPAAPAPAPAAAGGATFNDPSALLMGPQGEQVIAQMESMG---FPRSDIDR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQ----------AANSPTQMPQPTQ 231
A+RAA+ NP+RA+EYL +GIPE ++ + AP + + +
Sbjct: 165 AMRAAFFNPDRAIEYLLNGIPETSQAEQREAAPATTAPSGPAAPAATGGDEHVNLFEAAA 224
Query: 232 PAPVTSSGPNANPLDLFPQGLPDVGSGAAGA-GSLDFLRNSPQF 274
A G QGL G G+ G+LDFLRN+P F
Sbjct: 225 QAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGNLDFLRNNPHF 268
>gi|390602258|gb|EIN11651.1| UV excision repair protein Rad23 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 399
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 121/212 (57%), Gaps = 21/212 (9%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+K+ VKTL+ F +E + +TV D+K KI+ QG D AA Q LI+ GKVL D+ +
Sbjct: 1 MVKLTVKTLQQKVFTIEAEGTETVGDLKKKIQAEQGHD---AATQKLIFSGKVLPDEKVV 57
Query: 61 EENKVAENSFVVIMLTKNKRPT------GEGSTRSTAPTKAPQSSAPTPAATPATAPQTA 114
E + + F+V+M+ K K PT G ST + P AP AP PAA A
Sbjct: 58 ETLNIKDKDFLVLMVAKPK-PTPVTPAAGSSSTPAAVPAAAPAQPAPAPAAPAPAA---- 112
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
AP+PAPA+ + + + + +G +S V G+ L+ +I +++MG +
Sbjct: 113 ---PAPAPAAPSPAPAAEAAAPAAPAAALPAFGDMSS-FVTGDALQQSINGMIEMG---F 165
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
+R+ V+RALRA++NNP+RAVEYL++GIP E
Sbjct: 166 EREQVMRALRASFNNPDRAVEYLFNGIPAHLE 197
>gi|226291157|gb|EEH46585.1| hypothetical protein PADG_02683 [Paracoccidioides brasiliensis
Pb18]
Length = 379
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 129/284 (45%), Gaps = 27/284 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +T+ +K +I +G DV A Q LIY GK+L+D+ T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M+TK K T +T S AP+ TP A+ P P S
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTT-PAATSSQAPS--------TPTPAVASTPAAPAPASNPQ 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A+ + A + + + S L+ G E I Q+ MG + R + R
Sbjct: 109 PTDAPATTTPAAPAPAPAAAGGATF-NDPSALLMGPQGEQVIAQMESMG---FPRSDIDR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQ----------AANSPTQMPQPTQ 231
A+RAA+ NP+RA+EYL +GIPE ++ + AP + + +
Sbjct: 165 AMRAAFFNPDRAIEYLLNGIPETSQAEQREAAPATTAPSGPAAPAATGGDEHVNLFEAAA 224
Query: 232 PAPVTSSGPNANPLDLFPQGLPDVGSGAAGA-GSLDFLRNSPQF 274
A G QGL G G+ G+LDFLRN+P F
Sbjct: 225 QAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGNLDFLRNNPHF 268
>gi|149037168|gb|EDL91699.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
gi|149037169|gb|EDL91700.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
Length = 343
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 96/203 (47%), Gaps = 25/203 (12%)
Query: 89 STAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
ST P SS P P T AT P+ + +PAPA S+ +S S ++
Sbjct: 53 STTPASTTASSEPAP--TGATQPEKPAEKPAQTPVLTSPAPAD---STPGDSSRSNLFED 107
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 108 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 164
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
V P P V++ P + + + +G L+FL
Sbjct: 165 AVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGHPLEFL 207
Query: 269 RNSPQFQVLRAMVQANPQLFPCF 291
RN PQFQ +R ++Q NP L P
Sbjct: 208 RNQPQFQQMRQIIQQNPSLLPAL 230
>gi|238503490|ref|XP_002382978.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
gi|220690449|gb|EED46798.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
Length = 439
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 136/284 (47%), Gaps = 40/284 (14%)
Query: 9 LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAEN 68
LK F ++ +P +TV VK KI +G +V Q LIY GK+L+DD +E + E
Sbjct: 69 LKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIESYNIEEK 125
Query: 69 SFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPA 128
F+V M++K K S+ + P++AP TP+ + P + + T
Sbjct: 126 GFIVCMVSKPK-----ASSSTATPSQAPS----TPSRAATSTPAAPPAPAPSTNASATAP 176
Query: 129 PASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 188
PA+ S ++ + S++ + S L++G+ E I + MG + RD + RA+RAA+
Sbjct: 177 PATPSPAAATQPSDAAF--NDPSALLSGSQGEAVISHMESMG---FPRDDINRAMRAAFF 231
Query: 189 NPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNA------ 242
NP RA+EYL +GIPE + + + A + PQP P S+G NA
Sbjct: 232 NPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAAS-PQP----PAASAGGNAPATTGG 286
Query: 243 -NPLDLF-----------PQGLPDVGSGAAGAGSLDFLRNSPQF 274
P++LF P G + G +LDFLRN+P F
Sbjct: 287 EEPVNLFEAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNNPHF 330
>gi|60422770|gb|AAH90351.1| Rad23b protein [Rattus norvegicus]
Length = 333
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 96/203 (47%), Gaps = 25/203 (12%)
Query: 89 STAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
ST P SS P P T AT P+ + +PAPA S+ +S S ++
Sbjct: 43 STTPASTTASSEPAP--TGATQPEKPAEKPAQTPVLTSPAPAD---STPGDSSRSNLFED 97
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 98 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 154
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
V P P V++ P + + + +G L+FL
Sbjct: 155 AVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGHPLEFL 197
Query: 269 RNSPQFQVLRAMVQANPQLFPCF 291
RN PQFQ +R ++Q NP L P
Sbjct: 198 RNQPQFQQMRQIIQQNPSLLPAL 220
>gi|260821380|ref|XP_002606011.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
gi|229291348|gb|EEN62021.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
Length = 315
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 116/287 (40%), Gaps = 79/287 (27%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ KTL+ +F +E++ TV +K K+E +G + +PAA LIY GK+L+DD L
Sbjct: 1 MQVTFKTLQQQTFKIEIEENATVKQLKEKVEGEKGKESFPAAGLKLIYAGKILQDDLPLS 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ K+ E +FVV+M+TK P + P P
Sbjct: 61 QYKIDEKNFVVVMVTKQ-------------PKRNP------PRQRQHLLLHLHPHPHLLQ 101
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P P +S H S V G E + ++ MG ++RD VV
Sbjct: 102 LPRPRRRNPRKRRRRKRRKKKSRRKLHLYSQ-VTGTAYETMVTSMMSMG---FERDQVVA 157
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRA++NNP+RAVEYL +G+P E
Sbjct: 158 ALRASFNNPDRAVEYLLTGLPPAME----------------------------------- 182
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
NPL +FLR+ PQF +R ++++NP L
Sbjct: 183 -NPL--------------------EFLRDQPQFNNMRQLIRSNPTLL 208
>gi|32402044|gb|AAP81008.1| RAD23-like protein B [Homo sapiens]
Length = 337
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 104/208 (50%), Gaps = 35/208 (16%)
Query: 89 STAPTKAPQSSAPTPAAT-----PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
S P A SS P PA+ PA P P++T PT A+ S+ +S S
Sbjct: 53 SITPASATASSEPAPASAAKQEKPAEKP-AETPVATSPT---------ATDSTSGDSSRS 102
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 103 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 159
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P QAA+ T +PQ + A ++ + ++G
Sbjct: 160 DRESQAVVDPP---QAAS--TGVPQSSAVAAAAATTTAT------------TTTTSSGGH 202
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FLRN PQFQ +R ++Q NP L P
Sbjct: 203 PLEFLRNQPQFQQMRQIIQQNPSLLPAL 230
>gi|322698416|gb|EFY90186.1| UV excision repair protein (RadW), putative [Metarhizium acridum
CQMa 102]
Length = 400
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 108/225 (48%), Gaps = 23/225 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +EV+P + VK KI +G D Q LIY GK+LKDD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTYLISAVKEKISAEKGWD---PKHQKLIYSGKILKDDETVA 57
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGE-GSTRSTAPTKAPQSSAPTPAATPATAPQT 113
+ E FVV M+ K +R + G P + P +A + AA A
Sbjct: 58 SYNIEEKGFVVCMVNKACLFSSQLRRCFNQTGRLTYLQPKEKPAPTAESSAAAAPPATPA 117
Query: 114 AVPISTEPTPAPTPAPASASVSSVSAT------SESGVYGHAASNLVAGNNLEGAIQQIL 167
ST PA PA +S + S+ AT E+G G S L G AI +
Sbjct: 118 QPVASTPAVPA-APAQSSTTQSAAPATPTPQRSGEAG--GETGSGLAMGAERAEAITNME 174
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
MG ++R + A+RAA+NNP+RAVEYL +GIPE + + AR
Sbjct: 175 AMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHAR 216
>gi|348522726|ref|XP_003448875.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 481
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 109/213 (51%), Gaps = 20/213 (9%)
Query: 85 GSTRSTAPTKAPQSSAPTPAATPATAP----QTAVPISTEPTPAPTP-APASASVSSVSA 139
GST A + AP++ PA P+ +P QT + +P P+ AP +S SS+
Sbjct: 170 GSTAPVASSTAPEAVEEAPALVPSDSPTPAAQTEEELREDPENEPSDTAPVQSSASSL-- 227
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
E G+ AAS LV G E + +I+ +G ++R+ VV ALRA+YNNP+RAVEYL
Sbjct: 228 VDELGLLEEAASILVTGPEYENLVSEIMSIG---YEREQVVAALRASYNNPDRAVEYLLM 284
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG- 258
GIP +A + + AN T + P N +++F QG P GS
Sbjct: 285 GIPARASDLHNPQPSRHSTPANPSTPSTEEPPQQPPAPPSSVINDVEVF-QG-PVSGSQP 342
Query: 259 -AAGAGS------LDFLRNSPQFQVLRAMVQAN 284
AG GS L+FLRN PQFQ +R ++Q N
Sbjct: 343 VTAGGGSGSIGNPLEFLRNQPQFQQMRQIIQQN 375
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 28/178 (15%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I +KTL+ +F +E+ PE TV +K KIE +G D +P+ Q LIY GK+L DD L
Sbjct: 1 MLTITLKTLQQQTFRIEIDPELTVKALKEKIEEHRGKDAFPSVGQKLIYAGKILNDDIPL 60
Query: 61 EENKVAENSFVVIMLTKNKRPT--GEGSTRS-------------------TAPTKAPQSS 99
+E K+ E +FVV+M+TK K PT E +T S + P + P S
Sbjct: 61 KEYKIDEKNFVVVMVTKPK-PTSPAEAATHSVPTPAATPVPPPAAAPAPASGPKQVP--S 117
Query: 100 APTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGN 157
PT + A +VP P+ AP + +V+SV AT++ + H+ S +G+
Sbjct: 118 TPTHTTSAAVPASQSVP----PSEAPPSVQENTTVASVGATAKPTLDSHSESAPASGS 171
>gi|121712652|ref|XP_001273937.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
gi|119402090|gb|EAW12511.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
Length = 383
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 138/288 (47%), Gaps = 29/288 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P +TV VK KI +G +V +Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---SQLKLIYSGKILQDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K ++ + P++AP S P+ A A A S
Sbjct: 58 TYNIEEKGFIVCMVSKPK-----ATSAAATPSQAP--STPSRAVASTPAAPPAPAPSA-A 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P + + ++++ V + S L++G E + Q+ MG + R + R
Sbjct: 110 TSTPAVPATPSPAAPAQPSADTPVAFNDPSALLSGAQSEAVVAQMESMG---FPRSDINR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RAA+ NP+RA+EYL +GIPE E Q + G A + P V SS
Sbjct: 167 AMRAAFFNPDRAIEYLLNGIPETIHQEQQQQQQQQQAGAGAAASPPAPSAPSGESVPSST 226
Query: 240 PNANPLDLFPQGL-PDVGSGAA--------GAG----SLDFLRNSPQF 274
P++LF G GA GAG +L+FLRN+P F
Sbjct: 227 GGDEPVNLFEAAAQAGTGEGAGRGARAGVEGAGEALPNLEFLRNNPHF 274
>gi|336470133|gb|EGO58295.1| hypothetical protein NEUTE1DRAFT_117137 [Neurospora tetrasperma
FGSC 2508]
gi|350290173|gb|EGZ71387.1| UV excision repair protein Rad23 [Neurospora tetrasperma FGSC 2509]
Length = 383
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 146/320 (45%), Gaps = 50/320 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E++P +T+ VK KI +G + Q LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETISKVKQKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E FVV ++ K P+++AP PA + ++A A P + P
Sbjct: 58 SYKIEEKGFVVCVVNK------------------PKTTAPKPAESSSSAAAPATPAAAAP 99
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASN--------------LVAGNNLEGAIQQIL 167
P P A A+ S+ +A S + A+ L G AI +
Sbjct: 100 ASTPAPPAAPAASSAAAAASSTPTPARTAAAPEAAPAAGARDANALAMGEQRAEAIANME 159
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
MG ++R + A+RAA+ NPERAVEYL +GIP + Q +R P AA
Sbjct: 160 AMG---FERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPAAAPAAAAQ 216
Query: 228 QPTQPAPVTSSGPNANPLDLFPQ-----------GLPDVGSGAAGAGSLDFLRNSPQFQV 276
+ A N DL Q G G+ AAG G+LDFLRN+ QFQ
Sbjct: 217 AASPAAAGGDDDDQVNLFDLAAQLGNSAGGRGARGAEGAGAEAAGLGNLDFLRNNAQFQQ 276
Query: 277 LRAMVQANPQLF-PCFKSWG 295
+R +VQ PQ+ P + G
Sbjct: 277 MRQLVQEQPQMLEPILQQLG 296
>gi|347800665|ref|NP_001231653.1| UV excision repair protein RAD23 homolog B isoform 3 [Homo sapiens]
gi|119579420|gb|EAW59016.1| RAD23 homolog B (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 337
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 103/208 (49%), Gaps = 35/208 (16%)
Query: 89 STAPTKAPQSSAPTPAAT-----PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
S P A SS P PA+ PA P P++T PT A+ S+ +S S
Sbjct: 53 SITPASATASSEPAPASAAKQEKPAEKP-AETPVATSPT---------ATDSTSGDSSRS 102
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 103 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 159
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P QAA+ T PQ + A ++ + ++G
Sbjct: 160 DRESQAVVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGH 202
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FLRN PQFQ +R ++Q NP L P
Sbjct: 203 PLEFLRNQPQFQQMRQIIQQNPSLLPAL 230
>gi|240256296|ref|NP_197113.4| uncharacterized protein [Arabidopsis thaliana]
gi|332004862|gb|AED92245.1| uncharacterized protein [Arabidopsis thaliana]
Length = 171
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 59/76 (77%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG F++EVKP D+V +VK IETV G+ YPAAQQ+LI++ + L+D+TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 62 ENKVAENSFVVIMLTK 77
NKV + S + I++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|325091544|gb|EGC44854.1| pre-mRNA-splicing factor Cwc24 [Ajellomyces capsulatus H88]
Length = 826
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 153/317 (48%), Gaps = 59/317 (18%)
Query: 9 LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAEN 68
LK F +E +P +TV VK KI +G DV AQQ LIY GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 69 SFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPA 128
F+V M++K P ST + ++AP + AP A+TPA A + P++++ T P+PA
Sbjct: 505 GFIVCMVSK---PKPAPSTSAGVSSQAPSTPAPAAASTPAAAAHRSNPLTSDITATPSPA 561
Query: 129 PASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 188
A+ + +T+ + S L+ G E + Q+ MG + R + RA+RAAY
Sbjct: 562 APVAAPVAGGSTTFND-----PSALLMGPQGEQVVAQMESMG---FPRSDIDRAMRAAYF 613
Query: 189 NPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLD 246
NP+RA+EYL +GIPE QAE + A A + T P P T++ + ++
Sbjct: 614 NPDRAIEYLLNGIPETTQAEHREAAPATPATTTPSGSTAAP------PTTAAVGDDEHIN 667
Query: 247 LFP---------------------QGLPDVGSGAAGAGSLDFLRNSPQFQ---------- 275
LF QGL G G+LDFLR++P FQ
Sbjct: 668 LFEAAAQAGAPQLGGAGRGARAAGQGLAPPAEG-GNLGNLDFLRSNPHFQQLRQLVQQQP 726
Query: 276 -----VLRAMVQANPQL 287
+L+ + NPQL
Sbjct: 727 QMLEPILQQVGAGNPQL 743
>gi|358387006|gb|EHK24601.1| hypothetical protein TRIVIDRAFT_84601 [Trichoderma virens Gv29-8]
Length = 361
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 102/202 (50%), Gaps = 26/202 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++V+P D + VK KI +G D P +Q+ LIY GK+LKDD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKISAVKEKISAEKGWD--PKSQK-LIYSGKILKDDDTVQ 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E FVV M+ K K + T A A TP PA V ST+
Sbjct: 58 SYNIEEKGFVVCMVNKPKPAAAPAAAAPPPATPA-PPVASTPVVPPAP-----VQTSTQA 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P TP P + SA + SG L G+ AI + MG ++R +
Sbjct: 112 APPATPTP------NRSAGTPSG--------LAMGSERAEAIANMEAMG---FERTQIEA 154
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+NNP+RAVEYL +GIPE
Sbjct: 155 AMRAAFNNPDRAVEYLLTGIPE 176
>gi|189195060|ref|XP_001933868.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979747|gb|EDU46373.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 382
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 132/299 (44%), Gaps = 58/299 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK F +E +P +T+ +K KI+ +G +V QQ LIY GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + A + S P P A A +A S+ P
Sbjct: 58 SYNIEEKGFIVCMVSKPK------AAAGAASSSKAAPSTPAPVAAQTPAAPSAPAPSSNP 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ + S + SG + S L G E AI + MG + R + R
Sbjct: 112 Q-------NAPATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMG---FARADIDR 161
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RAVEYL +GIPE A Q PT P P ++G
Sbjct: 162 AMRAAFFNPDRAVEYLLTGIPESALQ-----------EQAQQAQARAPTSPTPAGNTGAT 210
Query: 242 A----------NPLDLF-----------PQGLPDVGS--GAAG-----AGSLDFLRNSP 272
A P++LF P G GS GA G A SLDFLRN+P
Sbjct: 211 ATPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGSAPGATGGAALNANSLDFLRNNP 269
>gi|9755819|emb|CAC01850.1| putative protein [Arabidopsis thaliana]
Length = 142
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 59/76 (77%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG F++EVKP D+V +VK IETV G+ YPAAQQ+LI++ + L+D+TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 62 ENKVAENSFVVIMLTK 77
NKV + S + I++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|432091539|gb|ELK24564.1| UV excision repair protein RAD23 like protein B, partial [Myotis
davidii]
Length = 414
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 98/204 (48%), Gaps = 28/204 (13%)
Query: 89 STAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
S P A SS P P + AT + V +P P +++ S+ +S S ++
Sbjct: 129 SITPASATASSEPAPVS--ATKQENPV---EQPAETPVATSPTSTDSTSGDSSRSNLFED 183
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 184 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 240
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLDF 267
V P PV ++G P ++ + ++G L+F
Sbjct: 241 AV-------------------VDPPPVATTGPPQSSVAAAAATTTATTTTTSSGGHPLEF 281
Query: 268 LRNSPQFQVLRAMVQANPQLFPCF 291
LRN PQFQ +R ++Q NP L P
Sbjct: 282 LRNQPQFQQMRQIIQQNPSLLPAL 305
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct: 4 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 56
>gi|45198876|ref|NP_985905.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|44984905|gb|AAS53729.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|374109136|gb|AEY98042.1| FAFR358Wp [Ashbya gossypii FDAG1]
Length = 413
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+ I K K +++ P T+ + K + + D +Q +I+ GKVL+D TLE
Sbjct: 3 ITIHFKDFKKERLPLQLSPSATIAEAKQMLARAKQCD---ESQLKMIFSGKVLQDGNTLE 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ + V+ M++K K T + S P PA+ P+ PQ+ E
Sbjct: 60 GCKLKDGDQVIFMISKKKAET--------------RVSEPEPASEPSGGPQSEASTGLET 105
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + A V S G AS V G+ +++I++MG +DR V
Sbjct: 106 VTTPGVSAA------VDPESTGAAVGSGAS-FVTGSARSQTVERIMEMG---YDRAQVEM 155
Query: 182 ALRAAYNNPERAVEYLYSGIPEQ 204
ALRAA+NNP+RAVEYL +GIPE
Sbjct: 156 ALRAAFNNPDRAVEYLLTGIPEH 178
>gi|242793918|ref|XP_002482264.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
gi|218718852|gb|EED18272.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
Length = 375
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 105/202 (51%), Gaps = 17/202 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +TV VK KI +G + A+QQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPTETVGQVKEKIAREKG---WEASQQKLIYSGKILQDANTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K P G + SAP A + +TA VP
Sbjct: 58 SYNIEEKGFIVCMVSKPK-PAAGGPSTPAKAAPPATPSAPAQAPSASTAAAPQVP----- 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP PAS+ ++ + + + S L G+ E I Q+ MG + R + R
Sbjct: 112 ---STPTPASSGATTAATGEAAAF--NDPSALAMGSQGEAVISQMEAMG---FPRADIDR 163
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+ NP+RAV+YL +GIPE
Sbjct: 164 AMRAAFFNPDRAVDYLLNGIPE 185
>gi|146161955|ref|XP_001008308.2| UBA/TS-N domain containing protein [Tetrahymena thermophila]
gi|146146601|gb|EAR88063.2| UBA/TS-N domain containing protein [Tetrahymena thermophila SB210]
Length = 373
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 29/206 (14%)
Query: 2 MKIFVKTLKGTSF-DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT-T 59
MKI +KTLKGT F DV ++ TV ++K KI T + + L+++GK L +D+ T
Sbjct: 1 MKINIKTLKGTDFFDVNLEETATVAELKEKIATEKQKEKDTIK---LVHKGKQLTEDSKT 57
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
L E + +N FV++M + K + + AP +A QS + + +T +T
Sbjct: 58 LGELGIKDNDFVILMFFQKK------AEKEDAPQQA-QSDTTSTTSAASTT-------AT 103
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT P PA VS + T ++G G S+L+ G LE I++I MG ++R V
Sbjct: 104 NPTTVPKPA-----VSQPATTQQTGSQG-TGSDLLQGPELEAKIKEIESMG---FERPKV 154
Query: 180 VRALRAAYNNPERAVEYLYSG-IPEQ 204
++AL+AAY NPERAV+YL SG IP++
Sbjct: 155 LQALKAAYYNPERAVDYLLSGNIPKE 180
>gi|358373285|dbj|GAA89884.1| UV excision repair protein [Aspergillus kawachii IFO 4308]
Length = 369
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 103/202 (50%), Gaps = 16/202 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P +TV VK KI +G +V Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K +T S ++AP TP+ + P +
Sbjct: 58 SYNIEEKGFIVCMVSKPK------ATSSGTSSQAPS----TPSRAVTSTPAAPPAPAPSA 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P++ S ++ A G + S L++G E + Q+ MG + R V R
Sbjct: 108 ASTTPAVPSTPSPAAAGAAQAQGSAFNDPSALLSGTQSEAVVAQMEAMG---FARSDVNR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+ NP+RA+EYL +GIPE
Sbjct: 165 AMRAAFFNPDRAIEYLLNGIPE 186
>gi|346975858|gb|EGY19310.1| nucleotide excision repair protein RAD23 [Verticillium dahliae
VdLs.17]
Length = 394
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 109/214 (50%), Gaps = 24/214 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P D + VK +I +G D A +Q LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQNKFTLDVEPTDLISTVKQRISEEKGWD---AKEQKLIYSGKILKDEETVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP---QSSAPTPAATPATAPQTAVPIS 118
K+ E FVV M+ K K + S+A P ++ P A P + Q AVP +
Sbjct: 58 SYKIEEKGFVVCMIQKPKAKPAAPAASSSAVPSTPAQPVAATPAVPAAPQASTQAAVPST 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
PTPA + + T S G + +VA N+E MG ++R
Sbjct: 118 ------PTPAARVGAGGDGAPTDPSMAMGAQRAEVVA--NMEA-------MG---FERSQ 159
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
+ ALRAA+ NP+RAVEYL +GIPE A+ + R
Sbjct: 160 IDAALRAAFYNPDRAVEYLLTGIPEDAQREQEQR 193
>gi|451994966|gb|EMD87435.1| hypothetical protein COCHEDRAFT_1206663 [Cochliobolus
heterostrophus C5]
Length = 379
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 140/294 (47%), Gaps = 51/294 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK F +E +P +T+ +K KI+ +G +V QQ LIY GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + +++ AP + AP PA TP +APQ P
Sbjct: 58 SYNIEEKGFIVCMVSKPKA-----APAASSSRAAPSTPAPAPAQTP-SAPQA-------P 104
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T + T + + S + SG + S L G E AI + MG D D R
Sbjct: 105 TQSST-THNAPATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMGFARADID---R 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQA----EVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
A+RAA+ NP+RAVEYL +GIPE A Q ARAP NSPT P
Sbjct: 161 AMRAAFFNPDRAVEYLLTGIPESALQEQAQQTQARAP------NSPT--PAGGNAGATAQ 212
Query: 238 SGPNA---NPLDLFPQG----------------LPDVGSGAAGAGSLDFLRNSP 272
+ P++ P++LF G GA A SLDFLRN+P
Sbjct: 213 ANPSSGGDEPMNLFEAAAAAQNRGGAGGARSGGTGGAGGGALNANSLDFLRNNP 266
>gi|156051332|ref|XP_001591627.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980]
gi|154704851|gb|EDO04590.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 110/203 (54%), Gaps = 16/203 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P + + +VK KI +G + A+QQ LIY GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFVIEAEPTELISEVKDKISKEKG---WEASQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K S+ + AP+ ++A TPA A A + ST
Sbjct: 58 SYHIEEKGFIVCMVSKPKAAPAASSSATKAPSTPAPATAATPAPPAAPAHSS----STTN 113
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T P TP+PA ASV SV AT + G L G I ++ MG ++R +
Sbjct: 114 TAVPATPSPAGASVPSVQATPSNETTG-----LAMGAERSAQIAEMEAMG---FERSQID 165
Query: 181 RALRAAYNNPERAVEYLYSGIPE 203
A+RAA+ N ERA+EYL +GIPE
Sbjct: 166 LAMRAAFFNSERAIEYLLTGIPE 188
>gi|310791559|gb|EFQ27086.1| UV excision repair protein Rad23 [Glomerella graminicola M1.001]
Length = 391
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 100/203 (49%), Gaps = 16/203 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P D V VK KI +G D Q LIY GK+LKDD T+E
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLVSAVKQKIAGEKGWD---PKDQKLIYSGKILKDDDTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAP-TPAATPATAPQTAVPISTE 120
K+ E FVV M+ K K P PT A +SSAP PA T
Sbjct: 58 SYKIEEKGFVVCMVNKPKAPK---------PTPAAESSAPAVPATPAQPVAATPAAPPAP 108
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
A PA A + + + T+ G G ++ G + I + MG ++R +
Sbjct: 109 AAHAAAPAAAPTTPTPAARTTGGGDAGPTDPSMAMGAQRQEVIANMEAMG---FERAQID 165
Query: 181 RALRAAYNNPERAVEYLYSGIPE 203
A+RAA+ NP+RAVEYL +GIP+
Sbjct: 166 AAMRAAFYNPDRAVEYLLNGIPD 188
>gi|451846054|gb|EMD59365.1| hypothetical protein COCSADRAFT_185234 [Cochliobolus sativus
ND90Pr]
Length = 379
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 141/294 (47%), Gaps = 51/294 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK F +E +P +T+ +K KI+ +G +V QQ LIY GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + +++ AP + AP PA TP +APQ P
Sbjct: 58 SYNIEEKGFIVCMVSKPKA-----APAASSSKAAPSTPAPAPAQTP-SAPQA-------P 104
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T + T + + S + SG + S L G E AI + MG D D R
Sbjct: 105 TQSST-THNAPATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMGFARADID---R 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQA----EVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
A+RAA+ NP+RAVEYL +GIPE A Q ARAP NSPT P
Sbjct: 161 AMRAAFFNPDRAVEYLLTGIPESALQEQAQQTQARAP------NSPT--PAGGNTGATAQ 212
Query: 238 SGPNA---NPLDLFPQG----------------LPDVGSGAAGAGSLDFLRNSP 272
+ P++ P++LF G+GA A SLDFLRN+P
Sbjct: 213 ANPSSGGDEPMNLFEAAAAAQNRGGAGGARSGGTGGAGAGALNANSLDFLRNNP 266
>gi|302417214|ref|XP_003006438.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
gi|261354040|gb|EEY16468.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
Length = 394
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 24/214 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +EV+P D + VK +I +G D A +Q LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQNKFTLEVEPTDLISTVKQRISEEKGWD---AKEQKLIYSGKILKDEETVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP---QSSAPTPAATPATAPQTAVPIS 118
K+ E FVV M+ K K + S+A P ++ P A P + Q AVP +
Sbjct: 58 SYKIEEKGFVVCMIQKPKAKPAAPAASSSAVPSTPAQPVAATPAVPAAPQASTQAAVPST 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
PTPA + + + T S G + +VA N+E MG ++R
Sbjct: 118 ------PTPAARAGAGGDGAPTDPSMAMGAQRAEVVA--NMEA-------MG---FERSQ 159
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
+ ALRAA+ NP+RAVEYL +GIP+ A+ + R
Sbjct: 160 IDAALRAAFYNPDRAVEYLLTGIPDDAQREQEQR 193
>gi|389633979|ref|XP_003714642.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|351646975|gb|EHA54835.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|440474553|gb|ELQ43290.1| hypothetical protein OOU_Y34scaffold00162g59 [Magnaporthe oryzae
Y34]
gi|440479744|gb|ELQ60492.1| hypothetical protein OOW_P131scaffold01287g24 [Magnaporthe oryzae
P131]
Length = 401
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 111/218 (50%), Gaps = 19/218 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +EV+P D + VK KI +G D P Q+ LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQQKFVIEVEPTDLISAVKQKISEERGWD--PKLQK-LIYSGKILKDEETVE 57
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
K+ E FVV ++ K K P + S AP P ++ A P QT+ S+E
Sbjct: 58 SYKIEEKGFVVCVVNKPKAAPASAAAASSNAPPATPAAAPAATPAAPPAPAQTS---SSE 114
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P TP P A + G + + L G + AI + MG ++R +
Sbjct: 115 PAVPATPTPQRA------GEAPGGANFNDPNMLSTGAARDEAIANMEAMG---FERTQID 165
Query: 181 RALRAAYNNPERAVEYLYSGIPE---QAEVQPVARAPG 215
A+RAAY NP+RAVEYL +GIPE QA P ARA G
Sbjct: 166 AAMRAAYFNPDRAVEYLLNGIPENLRQATQPPAARAAG 203
>gi|67523697|ref|XP_659908.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
gi|40745259|gb|EAA64415.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
Length = 378
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 152/318 (47%), Gaps = 53/318 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++ +P +TV VK KI T +G DV P+ + LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP-TKAPQSSAPTPAATPATAPQTAVPISTE 120
+ E F+V M++K K T P +++P + A + +TPA P A +T
Sbjct: 58 FYNIEEKGFIVCMVSKPK----------TQPSSQSPSTPAKSVTSTPAPPPAPAPSTNTS 107
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T P PA+ S +S A S + S L+ G+ E I Q++ MG ++R+ +
Sbjct: 108 TTATSGPVPATPSPASSGAAQSSASTFNDPSALLTGSQSEEVINQMMSMG---FEREQIN 164
Query: 181 RALRAAYNNPERAVEYLYS---------GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
RA+RAA+ NP+RA+EYL + GIPE + + R+ AA
Sbjct: 165 RAMRAAFFNPDRAIEYLLNLLISAFAIKGIPENIQQEQQQRSAATTPAAPQAAA----AS 220
Query: 232 PAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG-------SLDFLRNSPQFQ--------- 275
AP +SG + P++LF G SLDFLRN P FQ
Sbjct: 221 GAPPATSGED-EPVNLFEAAAQAGEGRGGAGGASGGEPQSLDFLRNHPAFQQLRQLVQQQ 279
Query: 276 ------VLRAMVQANPQL 287
+L+ + Q NPQ+
Sbjct: 280 PQMLEPILQQVGQGNPQI 297
>gi|50309879|ref|XP_454953.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644088|emb|CAH00040.1| KLLA0E22133p [Kluyveromyces lactis]
Length = 383
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 139/308 (45%), Gaps = 42/308 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I K K +E+ + T+ K I + D A+Q LIY GK+L+D T+
Sbjct: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD---ASQIKLIYAGKILQDPKTVS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E V+ M++K K+ + + T T PQ + A+ +A
Sbjct: 58 GCNLKEGDQVIFMISKTKK---KADVKVTESTTEPQDESQATASAETSAV---------- 104
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A PA A+ + + T+ + G ++ V G+ + +I++MG +DR+ V R
Sbjct: 105 --ANAPAEATTTGTRTGTTAVTQEEGTTDASFVTGSQRNETVNRIMEMG---YDREQVER 159
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAE-VQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAA+NNP+RAVEYL GIPE +E Q A A + AN+ +++ P+ T
Sbjct: 160 ALRAAFNNPDRAVEYLLMGIPEASEPSQQQAEAVTSEAGANANSEVATDV-PSQFTEHED 218
Query: 241 NANPLDLFPQGLPDVG----SGAAGAGSLDF------LRNSPQFQVLRAMVQANPQ-LFP 289
N LF Q + G AAG G + + + Q LR +V P+ L P
Sbjct: 219 N-----LFAQAEANNGEQGHESAAGLGGEEMGTIGLTMEDITQ---LRDVVSGRPEALMP 270
Query: 290 CFKSWGNK 297
F+S +
Sbjct: 271 LFESLSTR 278
>gi|259145863|emb|CAY79123.1| Rad23p [Saccharomyces cerevisiae EC1118]
gi|323349008|gb|EGA83243.1| Rad23p [Saccharomyces cerevisiae Lalvin QA23]
Length = 408
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 131/301 (43%), Gaps = 32/301 (10%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTERTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V RALRAA+NNP+RAVEYL GIPE QP + A T QP+ ++
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPENLR-QPEPQQQTAAAAEQPSTAATTAEQPSTAATT 223
Query: 239 GPNANPLDLFPQGLP--DVGSGAAG--AGSLDFLRNSP---------QFQVLRAMVQANP 285
DLF Q + SGA G G+ D + P LR +V NP
Sbjct: 224 AEQPAEDDLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNP 283
Query: 286 Q 286
+
Sbjct: 284 E 284
>gi|342883708|gb|EGU84158.1| hypothetical protein FOXB_05335 [Fusarium oxysporum Fo5176]
Length = 390
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 105/207 (50%), Gaps = 25/207 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P + + VK KI +G + Q LIY GK+LKD+ T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WEPKLQKLIYSGKILKDEETVG 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP-QSSAPTPAATPATAP----QTAVP 116
+ E FVV M+ K K + S+AP P Q+ A TPAA A A QTAVP
Sbjct: 58 SYNIEEKGFVVCMVNKPKPKPEPKAAESSAPPATPAQAVANTPAAPAAPAHSSSHQTAVP 117
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+ PTP S + +G S L G+ AI + MG ++R
Sbjct: 118 AT------PTP--------QRSVDAGTGAQAEEPSGLAMGSQRTEAIANMEAMG---FER 160
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPE 203
+ A+RAA+NNP+RAVEYL +GIP+
Sbjct: 161 SQIEAAMRAAFNNPDRAVEYLLNGIPD 187
>gi|62362186|gb|AAX81530.1| RAD23B-like protein [Adineta ricciae]
Length = 244
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 124/287 (43%), Gaps = 49/287 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL F +E + DTV +K KI D Y A LI+ GK+L+D TLE
Sbjct: 1 MQLQIKTLSNEKFAIECELSDTVRTIKEKIAAKDLKDKYEADAVKLIFSGKILEDSKTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ +SF+V++ +P + + AP+ S A + T +
Sbjct: 61 FYSITSDSFLVVVKQAPTKPQAGSAAAAAAPSNP--SGAASAQTRTPTVATPTPAPAAPQ 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PAPAS + + S S ++ + E A++++ DMG +DR
Sbjct: 119 QQPTRPAPASGTTPAASQDS-----------FLSAESREKALRELTDMG---FDRAQAEL 164
Query: 182 ALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAP--GNGQAANSPTQMPQPTQPAPVTSS 238
ALRA++ + ERA EYL +G IP +E P A P G+GQ T S
Sbjct: 165 ALRASFYHVERAAEYLITGNIPNISE--PSAANPEGGSGQ-----------------TPS 205
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANP 285
G ++ G G L L SPQFQ LR ++Q NP
Sbjct: 206 GSESS-----------TGGRRGGEDDLVELSQSPQFQALRQLIQQNP 241
>gi|241950849|ref|XP_002418147.1| UV excision repair protein, putative [Candida dubliniensis CD36]
gi|223641486|emb|CAX43447.1| UV excision repair protein, putative [Candida dubliniensis CD36]
Length = 430
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 7/203 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I K K + ++V+ D+V K K+ +G D ++Q L+Y GKVL+DD LE
Sbjct: 1 MQIVFKDFKKQTVTLDVELTDSVLSTKEKLAQEKGCD---SSQIKLVYSGKVLQDDKNLE 57
Query: 62 ENKVAENSFVVIMLTKNKR-PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
K+ E + ++ M+ K K+ PT T+ST + + + + +T+ T+ +T
Sbjct: 58 SYKLKEGASIIFMINKTKKTPTPVPETKSTTESTSQEQVQAQGSTNESTSSSTSSTTTTT 117
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
A A A+++ ++ ++ + S G+ E +IQ I++MG ++R V
Sbjct: 118 AAAAAAAAGAASTGTTTTSEQQPEQAVSNESTFAVGSEREASIQNIMEMG---YERPQVE 174
Query: 181 RALRAAYNNPERAVEYLYSGIPE 203
ALRAA+NNP RAVEYL +GIPE
Sbjct: 175 AALRAAFNNPHRAVEYLLTGIPE 197
>gi|395740795|ref|XP_003777470.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pongo abelii]
Length = 337
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 90/171 (52%), Gaps = 22/171 (12%)
Query: 123 PAPTPAPAS--ASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
PA TP S A+ S+ +S S ++ A S LV G + E + +I+ MG ++R+ V+
Sbjct: 80 PAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVI 136
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A ++
Sbjct: 137 AALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAAAAATTT 191
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
+ ++G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 192 AT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 230
>gi|47718026|gb|AAH70960.1| Rad23b protein [Rattus norvegicus]
Length = 252
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 20/152 (13%)
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
+S S ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL
Sbjct: 8 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 64
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIP E Q V P P V++ P + + +
Sbjct: 65 GIPGDRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTT 107
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
+G L+FLRN PQFQ +R ++Q NP L P
Sbjct: 108 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 139
>gi|346324523|gb|EGX94120.1| UV excision repair protein (RadW), putative [Cordyceps militaris
CM01]
Length = 1066
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 5 FVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENK 64
+ LK F +EV+P D + VK KI +G D Q LIY GK+LKD+ T+
Sbjct: 689 LAQDLKQQKFTLEVEPADLISAVKEKISAEKGWD---PKHQKLIYSGKILKDEETVASYN 745
Query: 65 VAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPA 124
+ E FVV M+ K K + + AP P + A PA Q++ ST P
Sbjct: 746 IEEKGFVVCMVNKPKEKPAAAAPSAVAPPATPAQPVTSTPAVPAAPNQSSANQSTAPPVT 805
Query: 125 PTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALR 184
P+P ++ + + A A+ L G AI + MG ++R + A+R
Sbjct: 806 PSPNRSADAAAPTGAD---------AAGLTMGAERAAAITSMEAMG---FERSQIEAAMR 853
Query: 185 AAYNNPERAVEYLYSGIPE 203
AA+NNP+RAVEYL +GIP+
Sbjct: 854 AAFNNPDRAVEYLLTGIPD 872
>gi|145538419|ref|XP_001454915.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422692|emb|CAK87518.1| unnamed protein product [Paramecium tetraurelia]
Length = 331
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 38/200 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +KTL G +FD+EV+P +TV ++K KIE + + AQQ L+ +G +L+++ T+
Sbjct: 1 MKIIIKTLSGQTFDIEVQPTETVLNIKEKIEQ---NKQFEIAQQKLLRKGTLLQNEQTVA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + E F+V+M+ K G + + Q P P A +P
Sbjct: 58 ELGLQEKDFLVVMVNVKK-----GPPQQQPVQQQVQQPPQQPQPVQPQQPIQAF----KP 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
AP P N+V G+ + AIQ ++ MG + +
Sbjct: 109 VVAPAP-----------------------QNMVTGSEYDAAIQNLIQMG---FAKSECEA 142
Query: 182 ALRAAYNNPERAVEYLYSGI 201
A++AAYNNP+RA+EYL +GI
Sbjct: 143 AMKAAYNNPDRAIEYLLNGI 162
>gi|255943815|ref|XP_002562675.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587410|emb|CAP85444.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 380
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 102/202 (50%), Gaps = 13/202 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P +TV +VK+KI +G Y A + +IY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGE--YEAERMKVIYSGKILQDDKTVE 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V + +K + STA ++ P S P A +T P +
Sbjct: 59 SYNIQEKDFLVCLPSKQPKAAA-----STASSQVP--STPAARAPVSTPAAPPAPHAAAA 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + + A S +G S L G EGA+ Q+ MG D D R
Sbjct: 112 PPPSVAPATPSPAGAAPAPSSGPAFGD-PSALTMGPAAEGAVVQMEAMGFARTDID---R 167
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+ NP+RA+EYL +GIP+
Sbjct: 168 AMRAAFYNPDRAIEYLLTGIPD 189
>gi|299751880|ref|XP_002911697.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
gi|298409576|gb|EFI28203.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
Length = 377
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 14/208 (6%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+KI VKT + VEV+ DT+ VK KI G +P A Q +IY GK+L DD T+
Sbjct: 1 MVKITVKTTQQKVHHVEVELTDTIGTVKQKISDEHG---HPVAAQKIIYSGKILPDDKTI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + E F V+M++K K ++ + AP ++A A A P
Sbjct: 58 ESCALKEKDFFVLMVSKPKATPAASTSTTPAPATPAPAAAAPATAPTPAAAPAPAPSPAA 117
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P PA P+ A+ T+ G + ++G + A+Q +++MG + ++ VV
Sbjct: 118 PAPAAAPSEAT--------TAAPAQEGFGTGSFLSGAAYQNAVQNLVEMG---FPQEQVV 166
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ 208
RA+RA++NNP+RAV+YL +GIP E +
Sbjct: 167 RAMRASFNNPDRAVDYLMNGIPAHLEAE 194
>gi|417410194|gb|JAA51574.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 377
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 21/149 (14%)
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
S ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 143 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 199
Query: 203 EQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA 262
E Q V P PA T+ P ++ + ++G
Sbjct: 200 GDRESQAVVDPP-----------------PA-ATTGAPQSSVAAAAATTTATTTTTSSGG 241
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FLRN PQFQ +R ++Q NP L P
Sbjct: 242 HPLEFLRNQPQFQQMRQIIQQNPSLLPAL 270
>gi|342320043|gb|EGU11986.1| Uv excision repair protein rhp23, putative [Rhodotorula glutinis
ATCC 204091]
Length = 403
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 109/210 (51%), Gaps = 27/210 (12%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M++I KTL+ F +E +P +TV D+K KI+ QG +PA Q +I+ GK+L D+ T+
Sbjct: 1 MVRIQFKTLQQKQFFIEAEPTETVADLKKKIQADQG---FPAESQKIIFSGKILPDEKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E E F V+M+ K K + S AP+ + AP + + P +
Sbjct: 58 GEANFKEKDFCVVMVAKPKAAPASAAATSAAPSTPAAAPAPPQTPAQPASAPASAPNAPG 117
Query: 121 P---------TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
P T A TPAPA+ + A++ ++G+ LE +I +++ MG
Sbjct: 118 PAAPSSAPAATEAETPAPAANQPAD------------EATSFISGSALETSISEMVAMG- 164
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGI 201
+ R+ V RA+RA++NNP RAVEYL +GI
Sbjct: 165 --FPREQVQRAMRASFNNPHRAVEYLMTGI 192
>gi|425766442|gb|EKV05052.1| UV excision repair protein (RadW), putative [Penicillium digitatum
PHI26]
gi|425781661|gb|EKV19612.1| UV excision repair protein (RadW), putative [Penicillium digitatum
Pd1]
Length = 377
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 99/202 (49%), Gaps = 14/202 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P +TV +VK+KI +G Y A + +IY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGE--YDAERMKVIYSGKILQDDKTVE 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V + +K+P ST P S P A +T P +
Sbjct: 59 SYNIQEKDFLVCL--PSKQPKAASSTAPQVP------STPAARAPVSTPAPPPAPHAAAA 110
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + + S +G S L G+ EGA Q+ MG D D R
Sbjct: 111 APLFAAPATPSPAGAAPPPSSGPAFGDP-SALTMGSAAEGAAAQMEAMGFARTDID---R 166
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+ NP+RA+EYL +GIP+
Sbjct: 167 AMRAAFYNPDRAIEYLLTGIPD 188
>gi|322707150|gb|EFY98729.1| nucleotide excision repair protein RAD23 [Metarhizium anisopliae
ARSEF 23]
Length = 383
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 105/214 (49%), Gaps = 22/214 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG--KVLKDDTT 59
MK+ + LK F +EV+P D + VK KI +G D Q LIY G K+LKDD T
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTDLISAVKEKISGEKGWD---PKHQKLIYSGLGKILKDDET 57
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
+ + E FVV M+ K P + + + + AP ++ P A+ P ST
Sbjct: 58 VASYNIEEKGFVVCMVNK---PKEKPAPAAESSAAAPPATPAQPVASTPAVPAAPAQPST 114
Query: 120 EPTPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
+ AP TP P + E+G G S L G AI + MG ++R
Sbjct: 115 TQSAAPATPTP--------QRSGEAG--GETGSGLAMGAERAEAITNMEAMG---FERSQ 161
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
+ A+RAA+NNP+RAVEYL +GIPE + + AR
Sbjct: 162 IEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHAR 195
>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 106/205 (51%), Gaps = 23/205 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P D + VK +I +G D P Q+ LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQQKFVLDVEPTDLISAVKQRISEQRGWD--PKLQK-LIYSGKILKDEDTVE 57
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAP-QSSAPTPAATPATAPQTAVPIST 119
K+ E FVV ++ K K P E S+ + T AP QSS P P A PA TA +
Sbjct: 58 TYKIEEKGFVVCVVNKPKPAPAPEASSSAVPATPAPAQSSTPAPPAAPAQTSGTAAAVPA 117
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PTP T AP +A + A+ L G AI + MG ++R +
Sbjct: 118 TPTPNRTAAPEAAP--------------NDANALATGEQRAEAIANMEAMG---FERAQI 160
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQ 204
A+RAA+ NP+RA+ ++ GIPE
Sbjct: 161 DAAMRAAFYNPDRAL-TIHKGIPEH 184
>gi|392593502|gb|EIW82827.1| UV excision repair protein Rad23 [Coniophora puteana RWD-64-598
SS2]
Length = 424
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTL+ F ++ +P ++V ++K KI QG DV + Q LIY GKVL D ++
Sbjct: 1 MKITVKTLQQKVFTIDAEPSNSVQELKEKISKEQGHDV---SSQKLIYSGKVLADTKSVA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E ++ E F+V+M+ K K P+ A A +PA AP P
Sbjct: 58 ECEIKEKDFLVLMVAKPK-PSFAPPPAPVAAPAPAAQPEAPSAPSPAPAPSAPAPADAPA 116
Query: 122 TPAPTPAPASASVSSVSA----TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
P+ +A+ + A ++ G AA N N +E MG ++R+
Sbjct: 117 VPSAPSPAPAAAPTGGDAPTQPSNNDGFLTGAALNATVQNIME--------MG---FERE 165
Query: 178 TVVRALRAAYNNPERAVEYLYSGIP 202
V RALRA+YNNPERAVEYL++GIP
Sbjct: 166 QVQRALRASYNNPERAVEYLFNGIP 190
>gi|449300177|gb|EMC96189.1| hypothetical protein BAUCODRAFT_33528 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 20/212 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P +T+ +K KI +G + + Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFTIDAEPSETIGALKRKISEEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E F+V M +K P AP+ P+ A + P P
Sbjct: 58 SYKIEEKGFIVCMTSK--------------PKAAPKPVEPSTPAQAPSTPAAPPAPVAAP 103
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + S + S + + S L G + A+ + MG + RD + R
Sbjct: 104 NTTAAQPPPTPSPAPASTAAADPASWNDPSALAMGEQRQAAVANMEAMG---FPRDQIDR 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARA 213
A+RAA+ NP+RAVEYL +GIP AE + A A
Sbjct: 161 AMRAAFFNPDRAVEYLLNGIPASAEQEQRAAA 192
>gi|256273801|gb|EEU08724.1| Rad23p [Saccharomyces cerevisiae JAY291]
Length = 398
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 18/205 (8%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTEGTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPE 203
V RALRAA+NNP+RAVEYL GIPE
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPE 189
>gi|238567698|ref|XP_002386292.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
gi|215437819|gb|EEB87222.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
Length = 161
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 33/187 (17%)
Query: 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75
V+ +P DTV +K KIE G +P A Q +IY GK+L DD T+E + E F+V+M+
Sbjct: 1 VDAEPSDTVGAIKSKIEAAHG---HPVASQKVIYSGKILADDKTIESCGIKEKDFLVLMV 57
Query: 76 TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVS 135
+K K PTPAAT ++ P A P++ PT + +A
Sbjct: 58 SKPK---------------------PTPAATTSSTPAPATPVAAPPTSESSSTTTTAPPP 96
Query: 136 SVSAT-----SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNP 190
+ + ++ +G +S ++G+ L+ I +++MG + +D V+RALRA++NNP
Sbjct: 97 AAAPVSSTEPAQQRAFGDTSS-FLSGSALQDTINNMVEMG---FPKDQVLRALRASFNNP 152
Query: 191 ERAVEYL 197
+RAVEYL
Sbjct: 153 DRAVEYL 159
>gi|171686384|ref|XP_001908133.1| hypothetical protein [Podospora anserina S mat+]
gi|170943153|emb|CAP68806.1| unnamed protein product [Podospora anserina S mat+]
Length = 383
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 103/215 (47%), Gaps = 18/215 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P D + VK K+ G D PA Q+ LIY GK+LKD+ T+E
Sbjct: 1 MKVNFKDLKQQKFTIEFEPTDLISTVKQKLSEDHGWD--PALQK-LIYSGKILKDEDTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E FVV M++K K P + S++ A + A + A V +
Sbjct: 58 SCKIEEKGFVVCMVSKPKAPKPAPAAESSSVVPATPAQAAPASTPAPPAAPAQVSNAASA 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA ++ + S S L G AI + MG ++R +
Sbjct: 118 APATPSPNRTSGAPNDS------------SALAMGEQRAQAIANMEAMG---FERSQIDA 162
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN 216
A+RAA+ NPERAVEYL +GIPE + Q A+ G+
Sbjct: 163 AMRAAFFNPERAVEYLLTGIPENVQQQTAAQRVGH 197
>gi|323305178|gb|EGA58925.1| Rad23p [Saccharomyces cerevisiae FostersB]
Length = 401
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 18/205 (8%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTERTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPE 203
V RALRAA+NNP+RAVEYL GIPE
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPE 189
>gi|400602559|gb|EJP70161.1| UV excision repair protein Rad23 [Beauveria bassiana ARSEF 2860]
Length = 397
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 104/218 (47%), Gaps = 28/218 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSD------VYPAAQQ---------- 45
MK+ + LK F +EV+P D + VK +I T +G D +Y A +
Sbjct: 1 MKVTFRDLKQQKFTLEVEPTDLISAVKERISTEKGWDPKHQKLIYSGADEQNPAPTAPPF 60
Query: 46 MLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA 105
+ + GK+LKD+ T+ + E FVV M+ K K + + AP P A A
Sbjct: 61 LTNFLGKILKDEETVASYNIEEKGFVVCMVNKPKEKPAAATPSAAAPPATPAQPAQGTPA 120
Query: 106 TPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQ 165
PA Q++ ++ PTP S AT+ +G G +A L G AI
Sbjct: 121 APAAPNQSSASLTANIPATPTPN------RSTDATAPAG--GDSAG-LTMGTERAAAITS 171
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
+ MG ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 172 MEAMG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPE 206
>gi|4261672|gb|AAD13972.1|S65964_1111 Unknown [Saccharomyces cerevisiae]
gi|347495|gb|AAA34935.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|347499|gb|AAA34938.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|430824|gb|AAB28441.1| RAD23 [Saccharomyces cerevisiae]
Length = 398
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 18/205 (8%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTERTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPE 203
V RALRAA+NNP+RAVEYL GIPE
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPE 189
>gi|398364251|ref|NP_010877.3| Rad23p [Saccharomyces cerevisiae S288c]
gi|418413|sp|P32628.1|RAD23_YEAST RecName: Full=UV excision repair protein RAD23
gi|409247|gb|AAA16070.1| DNA repair protein [Saccharomyces cerevisiae]
gi|603642|gb|AAB65005.1| Rad23p [Saccharomyces cerevisiae]
gi|51013487|gb|AAT93037.1| YEL037C [Saccharomyces cerevisiae]
gi|151944674|gb|EDN62933.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
gi|190405529|gb|EDV08796.1| UV excision repair protein RAD23 [Saccharomyces cerevisiae RM11-1a]
gi|285811588|tpg|DAA07616.1| TPA: Rad23p [Saccharomyces cerevisiae S288c]
gi|323309458|gb|EGA62674.1| Rad23p [Saccharomyces cerevisiae FostersO]
gi|323333880|gb|EGA75269.1| Rad23p [Saccharomyces cerevisiae AWRI796]
gi|349577621|dbj|GAA22789.1| K7_Rad23p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765999|gb|EHN07500.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299909|gb|EIW11001.1| Rad23p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 398
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 18/205 (8%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTERTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPE 203
V RALRAA+NNP+RAVEYL GIPE
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPE 189
>gi|358398611|gb|EHK47962.1| hypothetical protein TRIATDRAFT_298203 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++V+P D + VK KI +G + Q LIY GK+LKDD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDQISAVKEKIAAEKG---WEPKTQKLIYSGKILKDDDTVQ 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E FVV M+ K + + AP P P+ A P P
Sbjct: 58 SYNIEEKGFVVCMVNKPRPAAAAAPAAAAAPPATPAQRVPSTPAVP-------------P 104
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+ T + A + S G S L G AI + MG ++R +
Sbjct: 105 APSQTSSQAPPPATPTPNRSVESPSG-GVSGLAMGAERAEAIANMEAMG---FERTQIEA 160
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+NNP+RAVEYL +GIPE
Sbjct: 161 AMRAAFNNPDRAVEYLLTGIPE 182
>gi|254583708|ref|XP_002497422.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
gi|238940315|emb|CAR28489.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
Length = 384
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 96/205 (46%), Gaps = 26/205 (12%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I K K +E+ P +V D K+++ T + + +Q LIY GKVL+D L
Sbjct: 1 MINIIFKDFKKEKISLELDPSSSVKDAKVRLATEKSCE---ESQIKLIYSGKVLQDAKNL 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKA--PQSSAPTPAATPATAPQTAVPIS 118
+E+ + + V+ M++K K T + + A P SA T T A +
Sbjct: 58 QESGLKDGDQVIFMISKKKAATPSAAAATPASASVTEPSQSATTNTETQAAGSAAETTAT 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P+ T AP S + V G + +I++MG ++RD
Sbjct: 118 APAQPSTTQAPVSTP------------------DFVVGQQRNETVDRIMEMG---YERDQ 156
Query: 179 VVRALRAAYNNPERAVEYLYSGIPE 203
V RALRAA+NNP+RAVEYL GIPE
Sbjct: 157 VERALRAAFNNPDRAVEYLLMGIPE 181
>gi|50292795|ref|XP_448830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528143|emb|CAG61800.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 19/203 (9%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K + ++++ ++ VK + D +Q LI+ GKVLKD ++
Sbjct: 1 MVSVTFKNFKKEKYPLDLESSQSIVAVKEALSEKLSCD---PSQIKLIFSGKVLKDGDSV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + + V+ M++ K+ T T S+AP KA P+ + TPAT+ Q E
Sbjct: 58 ESCNFKDGNEVIFMVSA-KKATATKVTESSAP-KAQSEETPSES-TPATSTQP------E 108
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T PA+ S S + +G V G+ I++I++MG ++R V
Sbjct: 109 TNQNETTEPATNSSSENTEAPNAGT----DDGFVVGSERNATIERIMEMG---YERAEVE 161
Query: 181 RALRAAYNNPERAVEYLYSGIPE 203
RALRAA+NNP+RAVEYL GIPE
Sbjct: 162 RALRAAFNNPDRAVEYLLMGIPE 184
>gi|302916881|ref|XP_003052251.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
gi|256733190|gb|EEU46538.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
Length = 389
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 103/207 (49%), Gaps = 25/207 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P + + VK KI +G D P Q+ LIY GK+LKD+ T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTELISAVKEKISAEKGWD--PKLQK-LIYSGKILKDEETVA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP-----QSSAPTPAATPATAPQTAVP 116
+ E FVV M+ K K + S+AP P + A A +T+ Q AVP
Sbjct: 58 SYNIEEKGFVVCMVNKPKPKPAAPAAESSAPPATPAQPIANTPAAPAAPVQSTSHQAAVP 117
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+ PTP S + SG + S L G AI + MG ++R
Sbjct: 118 AT--PTP------------QRSVEAGSGAPSNEPSGLAMGAQRAEAIANMEAMG---FER 160
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPE 203
+ A+RAA+NNP+RAVEYL +GIPE
Sbjct: 161 SQIEAAMRAAFNNPDRAVEYLLTGIPE 187
>gi|190346878|gb|EDK39064.2| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 13/194 (6%)
Query: 24 VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 83
V K K+ QG + A Q L+Y GKVL+DD T+ ++KV E ++ M+ K K+P
Sbjct: 13 VLVAKQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAK-KKPVS 68
Query: 84 EGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
+ + TK +++ + T AT T+ + T + S + + S S
Sbjct: 69 D----AKPETKTSETAGAGKSETKATEASTST--AGNETSTSGNSGTSNTSGVSGSGSGS 122
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
G + +G+ E +IQ I++MG ++R V ALRA++NNP RAVEYL +GIPE
Sbjct: 123 GAVTSGGGDFASGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRAVEYLLTGIPE 179
Query: 204 QAEVQPVARAPGNG 217
+ ++ A +G
Sbjct: 180 SLQRPQISNAAASG 193
>gi|258571718|ref|XP_002544662.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
gi|237904932|gb|EEP79333.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
Length = 371
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 143/322 (44%), Gaps = 79/322 (24%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---------- 51
MK+ + LK F ++ +P +T+ +K KI +G D AAQQ LIY G
Sbjct: 1 MKLSFRDLKQQKFTIDAEPSETIGQLKEKIAQEKGWD---AAQQKLIYSGELHFERHLRL 57
Query: 52 ---------------KVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP 96
K+L++ T+E + E FVV M++K K T P
Sbjct: 58 ARDLNLLSDVRPSTGKILQNANTIESYNIEEKGFVVCMVSKPK----------TQP---- 103
Query: 97 QSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAA-----S 151
AP+ A P+ P T P T AP+ + + S + S G AA S
Sbjct: 104 ---APSTPAGPSQPPATPAPAQTSTPAAPSAPAPATNDPSAPPATPSPAGGDAAAFNNPS 160
Query: 152 NLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA 211
L+ G+ E A+Q++ MG + R + RA+RAA+ +P+RA+EYL +GIP+ E QP A
Sbjct: 161 TLLMGSQSEAAVQEMEAMG---FPRADIDRAMRAAFFHPDRAIEYLLNGIPDTPE-QPAA 216
Query: 212 RAPGNGQAANSPTQ--MPQPTQPAPVTSSGPNANPLDLFP-----------------QGL 252
R + ++P Q +P P P ++ P+ P++LF
Sbjct: 217 R-----EQPSAPAQSNVPVPPSNQPAANAEPD-EPINLFEAAAQAAQGGGARGTRTAGAS 270
Query: 253 PDVGSGAAGAGSLDFLRNSPQF 274
+G G +LDFLRN+P F
Sbjct: 271 LGGAAGGEGLSNLDFLRNNPHF 292
>gi|145503696|ref|XP_001437822.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404979|emb|CAK70425.1| unnamed protein product [Paramecium tetraurelia]
Length = 324
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 38/201 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +KTL G +F++EV+P D+V ++K KIE V+ + AQQ L+ +G +L DD T+
Sbjct: 1 MKIIIKTLSGQTFELEVQPTDSVLNIKEKIEKVKQ---FEIAQQKLLRKGTLLVDDQTVG 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E F+V+M+ K P + P VP +P
Sbjct: 58 DLGIQEKDFLVVMVNVKK------GPPQQQPVQQQAQQPPQQPQPVQPQQPIEVP---KP 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PT SN+V G+ + AIQ ++ MG + +
Sbjct: 109 LNNPT-----------------------TSNMVTGSEYDQAIQNLIQMG---FAKSECEA 142
Query: 182 ALRAAYNNPERAVEYLYSGIP 202
A++AA+NN RA+EYL +G+P
Sbjct: 143 AMKAAFNNQNRAIEYLLNGLP 163
>gi|146418936|ref|XP_001485433.1| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 13/194 (6%)
Query: 24 VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 83
V K K+ QG + A Q L+Y GKVL+DD T+ ++KV E ++ M+ K K+P
Sbjct: 13 VLVAKQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAK-KKPVS 68
Query: 84 EGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
+ + TK +++ + T AT T+ + T + S + + S S
Sbjct: 69 D----AKPETKTSETAGAGKSETKATEASTST--AGNETSTSGNSGTSNTSGVSGSGSGS 122
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
G + G+ E +IQ I++MG ++R V ALRA++NNP RAVEYL +GIPE
Sbjct: 123 GAVTSGGGDFALGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRAVEYLLTGIPE 179
Query: 204 QAEVQPVARAPGNG 217
+ ++ A +G
Sbjct: 180 SLQRPQISNAAASG 193
>gi|449017046|dbj|BAM80448.1| nucleotide excision repair protein yeast rad23/ human HHR23A
homolog [Cyanidioschyzon merolae strain 10D]
Length = 430
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 49/308 (15%)
Query: 2 MKIFVKTLKGTSFDVE-VKPEDTVFDVKMKIETVQGSDVYPAAQQ--MLIYQGKVLKDDT 58
M++ KTL + ++ + P+ TV ++K ++ + PA Q LI+ G+VL D T
Sbjct: 1 MRLTFKTLDNKNLSLDGISPDTTVEELKRELGGREEFRWDPARTQEARLIFAGRVLSDPT 60
Query: 59 -TLEENKVAENSFVVIM----LTKNKRPTGEGST---RSTAPTKAPQSSAPTPAATPATA 110
L + + ++ F+V+M T+ R T S+ + P +A +S T +AT A+
Sbjct: 61 QKLADCGMQDDDFLVVMPPRVATQRSRKTASVSSADAQLKTPLQAGLASEATDSATIASE 120
Query: 111 PQTAVPISTEP------TPAPTPAPASASVSS--VSATSESGVYGHAASNLVAGNNLEGA 162
+P + P + TPA + A + V T+ SG+ A+S L G+
Sbjct: 121 ASRGIPADSPPASVSAKSSGATPAESGALSQTPQVEGTTTSGI---ASSGLAVGDEYSLY 177
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPV---ARAPGNG 217
+ ++ DMG +D ++ RA+RAA+ NPERA+EYL +G P E +P+ AR P +
Sbjct: 178 MNRMRDMG---FDDGSIERAMRAAHYNPERAIEYLCNGFPANTESLTEPLNDEARRPEH- 233
Query: 218 QAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVL 277
Q + M Q ++PA P++ + LD +R P F +L
Sbjct: 234 QTLPAQAGMDQTSRPAEAVH---------------PELQQSRS---ELDIIRRLPHFALL 275
Query: 278 RAMVQANP 285
R +Q +P
Sbjct: 276 RRAIQQDP 283
>gi|428673091|gb|EKX74004.1| uv excision repair protein rad23, putative [Babesia equi]
Length = 317
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 120/288 (41%), Gaps = 76/288 (26%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLK +V+V+ TV V +IE + + PA Q LI+ GK+LK +
Sbjct: 1 MKLTVKTLKNVQVEVQVQETSTVEAVMEQIEQLLPN--MPAKTQKLIHSGKILKRE---- 54
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
M K+ +G +K +SSAP P A E
Sbjct: 55 ------------MQIKDYPDIKDGDKVIVIASKVVESSAPQPVAK-----------VEEK 91
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP TP A S VY + +S L+ G L+ + +I +MG ++R V R
Sbjct: 92 TPESTPVQQEAPEKS------EPVYDNPSSKLLIGQELQDNVNRICEMG---FERAMVER 142
Query: 182 ALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
A+ AA+NNPERAVE+L +G IPE P + P
Sbjct: 143 AMAAAFNNPERAVEFLSTGHIPE----------------------------PEAMGMDLP 174
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
+ P+ DV + L++ P F+ LR +VQ++PQ+
Sbjct: 175 SMEHSGDMPRTNEDV---------IQMLQSHPMFEQLRQVVQSDPQML 213
>gi|367011717|ref|XP_003680359.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
gi|359748018|emb|CCE91148.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
Length = 368
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 35/203 (17%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I K K +++ +V D K+++ + + Q LIY GKVL+D +L
Sbjct: 1 MVSITFKDFKKEKIPLDLDLSSSVLDAKVQLAQKKECE---EGQIKLIYSGKVLQDSKSL 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+E+ + + V+ M++K +T PQS +T+ P+S
Sbjct: 58 QESGLKDGDQVIFMISK--------KKSTTTTVTEPQSK------------ETSAPVSQS 97
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P P + PA+ + S+T++ G V G A+++I++MG ++R+ V
Sbjct: 98 PAP-QSETPAAETQQEASSTTDPG--------FVVGAQRNEAVERIMEMG---YEREQVD 145
Query: 181 RALRAAYNNPERAVEYLYSGIPE 203
RALRAA+NNP+RAVEYL GIPE
Sbjct: 146 RALRAAFNNPDRAVEYLLMGIPE 168
>gi|393217532|gb|EJD03021.1| UV excision repair protein Rad23 [Fomitiporia mediterranea MF3/22]
Length = 406
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 114/202 (56%), Gaps = 13/202 (6%)
Query: 2 MKIFVKTLKGTSFDV-EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M++ +K L+G F + +V+ EDTV +K KI G +P Q LIY GK+L+DD +
Sbjct: 1 MELTIKNLQGKVFKISDVEEEDTVASLKQKIA---GQFQHPVELQKLIYSGKILQDDAQI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+ + + F+V+M++K K + A + AP A AP A P++
Sbjct: 58 KSYNIKQTDFIVLMVSKPKA-----APAPAAAPAPVAAKAPEATPATAPAPAPAAPVAAT 112
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T A + A A+ S +AT + +G S ++G+ L+ +IQ +++MG ++R V+
Sbjct: 113 STSAASSTSAPATASPAAATPQERAFGDTTS-FLSGDALQASIQNMIEMG---FERAQVM 168
Query: 181 RALRAAYNNPERAVEYLYSGIP 202
RA++A++NNP+RAVEYL +GIP
Sbjct: 169 RAMKASFNNPDRAVEYLMNGIP 190
>gi|212535726|ref|XP_002148019.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
gi|210070418|gb|EEA24508.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
Length = 372
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 106/205 (51%), Gaps = 18/205 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +TV VK KI +G + A+QQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETVGQVKEKIAQEKG---WEASQQKLIYSGKILQDANTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K P G + A SAP PA +TA VP
Sbjct: 58 SYNIEEKGFIVCMVSKPK-PAAGGPSTPARAAPAATPSAPAPAPPASTAAVPQVP----S 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP P + A+A+ A ++ S L G E I Q+ MG + R + R
Sbjct: 113 TPTPASSGAAAASGEAPAFNDP-------SALAMGTQGEAVISQMEAMG---FPRADIDR 162
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAE 206
A+RAA+ NP+RAV+YL +GIPE E
Sbjct: 163 AMRAAFFNPDRAVDYLLNGIPENIE 187
>gi|344244513|gb|EGW00617.1| UV excision repair protein RAD23-like A [Cricetulus griseus]
Length = 316
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 97/213 (45%), Gaps = 63/213 (29%)
Query: 94 KAPQSSAPTPAATPATAPQTAVPISTEPTPAPT-----PAPAS---ASVSSVSATSES-- 143
KA QS+ P +P AP+++ P PAPT P PAS S S SAT+ S
Sbjct: 6 KAGQSTPAPPEVSPTAAPESSTPF----PPAPTSGMSHPPPASREDKSPSEESATATSPE 61
Query: 144 ------------GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPE 191
G AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP
Sbjct: 62 SISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPH 118
Query: 192 RAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQG 251
RAVEYL +GIP E P +G S P QPA
Sbjct: 119 RAVEYLLTGIPGSPE-------PEHGSVQESQV----PEQPA------------------ 149
Query: 252 LPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 150 -----VEAAGENPLEFLRDQPQFQNMRQVIQQN 177
>gi|367049660|ref|XP_003655209.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
gi|347002473|gb|AEO68873.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +K LK F ++ +P + V +K KI +G D P Q+ LIY GK+LKD+ T+E
Sbjct: 1 MKITIKDLKQQRFTIDAEPTELVSALKQKISDERGWD--PKLQK-LIYSGKILKDEDTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E FVV ++ K K P AP +SA PA A P +
Sbjct: 58 SYKIEEKGFVVCVVNKPKEP-------KPAPAAESSASAAPATPAPAQTATPAAPAAPAQ 110
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T A + S +A +E GV ++ L G AI + MG ++R +
Sbjct: 111 TAGTPAAAPATPTPSRTAAAEPGVGVGDSNTLAIGQERAEAIANLEAMG---FERSQIDA 167
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+ NPERAVEY+ +GIPE
Sbjct: 168 AMRAAFYNPERAVEYILNGIPE 189
>gi|196008299|ref|XP_002114015.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
gi|190583034|gb|EDV23105.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
Length = 387
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 129/274 (47%), Gaps = 20/274 (7%)
Query: 23 TVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 82
TV +K +IE +G D + A LIY GK+L DDT +E+ K+ +FVV+M+ K K+P+
Sbjct: 27 TVRALKERIEKDRG-DAFLADDLKLIYGGKLLSDDTIIEDVKINPKNFVVVMVAK-KQPS 84
Query: 83 GEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSE 142
+ S+ +A ++ +S T ++ T + A S
Sbjct: 85 RQSSSTDSAAARSEAASTTTTTDVASSTSTTG---GDSKAQEKSEAKTETSTPQSQPQQS 141
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
A S+L++G+++E + +I+ MG + RD V+ ALRA++NNP RAVEYL +GIP
Sbjct: 142 GSSDSDAGSSLISGSSIEQIVSEIVSMG---FPRDQVLLALRASFNNPHRAVEYLTTGIP 198
Query: 203 EQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA 262
A P Q+ + QP NPL PQG
Sbjct: 199 ANVLETQTAETPTATQSESQAEPQTQPQPQEEEDQQQRQQNPLPSSPQG----------- 247
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQ-LFPCFKSWG 295
G L FLR+ F +R +VQ+NP+ L P + G
Sbjct: 248 GPLGFLRSQAVFSQMRQIVQSNPEALAPMLQQLG 281
>gi|401396253|ref|XP_003879788.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
gi|325114195|emb|CBZ49753.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
Length = 370
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 137/293 (46%), Gaps = 32/293 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ ++TL +++V PE+T+F++K K+E Q PA +Q L++ GK+L D ++
Sbjct: 1 MRLRIRTLSNEEAELDVGPEETIFNLKEKVE--QKWPHMPAVRQKLVHAGKILADSQKVK 58
Query: 62 EN-KVAENSFVVIMLTKN-KRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E + EN +V+M+TK +P G S+ + A S+ +P+ TP+ A
Sbjct: 59 ECPSLKENDRLVVMVTKAVAQPAGASSSAAPAAPAPASSATASPSETPSGDSAAASSAGA 118
Query: 120 EPTPAPTPAPASASVSSVSATSESG---VYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
A ASA S ++ E+G A S L G LE + ++ MG + R
Sbjct: 119 SAVSADASGSASAPAPSGTSEGEAGEALTRTAAESALFTGPQLEETLTHLVAMG---FPR 175
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
D +A+RAA+NNP+RAVEYL +G+P + A G Q A +
Sbjct: 176 DQAEQAMRAAFNNPDRAVEYLMNGMPPEVSA-LFGGASGEAQDAEGDA-IADEGDADGDE 233
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
+ NPL GA LR+ P F +R MVQANP + P
Sbjct: 234 GDEDDGNPL------------GA--------LRHHPAFNQIRQMVQANPAMLP 266
>gi|355715047|gb|AES05207.1| RAD23-like protein A [Mustela putorius furo]
Length = 182
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA---PTPAATPATAPQTA 114
++ E +FVV+M+TK K G +PT AP+SS P PA+ + P TA
Sbjct: 82 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPAPASGMSHPPPTA 135
>gi|428184303|gb|EKX53158.1| hypothetical protein GUITHDRAFT_64501 [Guillardia theta CCMP2712]
Length = 346
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 121/296 (40%), Gaps = 72/296 (24%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDV-----YPAAQQM-LIYQGKVLK 55
MK+ VK++ G +F+VE+ TVFD+K I V+ DV +++ M +I QGK+L
Sbjct: 1 MKVKVKSIAGDNFEVEIGGSSTVFDLKKAISEVKRYDVTDEMLRDSSKGMKIILQGKILD 60
Query: 56 DDTTLEEN--KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT 113
D T+ K+ SF V+M EG T PQ PA T
Sbjct: 61 DSQTISSLGPKI---SFFVMM-------PPEGVTLKKVEVSKPQDQ---PAVTS------ 101
Query: 114 AVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
G + ++ G +LE ++++I MG
Sbjct: 102 ---------------------------------GLQNNTILMGEDLEASVREICGMG--- 125
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA 233
+ V RALR A+NNP+RAVE LY+G + A Q + Q P+ A
Sbjct: 126 FAESEVRRALRLAFNNPDRAVEILYNGASDDA--QQMQNEQPAEQQQQQQGASPE----A 179
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
P S P +D + G AG L+ LR PQF +R VQ+ P L P
Sbjct: 180 PSHGSMPLRFNMDALAVNASEAG---AGGNQLEMLRRDPQFAFVRHCVQSQPSLLP 232
>gi|194225605|ref|XP_001916027.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Equus caballus]
Length = 336
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 89 STAPTKAPQSSAPTPA-ATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYG 147
S P SS P PA AT P + +P AP +++ S+ +S S ++
Sbjct: 53 SITPASTTASSEPAPASATKQEKP------AEKPAEAPVATSPTSTDSTSGDSSRSNLFE 106
Query: 148 HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV 207
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E
Sbjct: 107 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 163
Query: 208 QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDF 267
Q V P P + AP +S A SG L+F
Sbjct: 164 QAVVDPP------------PAASTGAPQSSVAAAAATTT---ATTTTTSSGGH---PLEF 205
Query: 268 LRNSPQFQVLRAMVQANPQLFPCF 291
LRN PQFQ +R ++Q NP L P
Sbjct: 206 LRNQPQFQQMRQIIQQNPSLLPAL 229
>gi|330803429|ref|XP_003289709.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
gi|325080219|gb|EGC33784.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
Length = 349
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 10/208 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +K + + E+ + TV D+K I + + P+ Q LIY GK+L+D TLE
Sbjct: 1 MKLTIKNINKEVYSFELDSDKTVLDLKNSI--FEKYNQIPSWQ-TLIYSGKILEDKNTLE 57
Query: 62 ENKVAENSFVVIMLTKNKR---PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
K++E F+V+M+ K + S + + + ++ PA T + T P
Sbjct: 58 SYKISEQGFIVMMIKKPREAPATATTTSPSESTSSPSNSTTTSQPANTTSAPVTTPNPTP 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
PT S++ + +++ S ++++ V G LE I+ I+DMG + R+
Sbjct: 118 ARPTTPNPTPTTSSTPGTTPSSNTSPSQNTSSTDFVTGTELENTIKNIVDMG---FQREQ 174
Query: 179 VVRALRAAYNNPERAVEYLYSG-IPEQA 205
V+RALR YNN +RAVE L SG IPE A
Sbjct: 175 VIRALRLGYNNADRAVELLLSGSIPENA 202
>gi|405118128|gb|AFR92903.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 108/202 (53%), Gaps = 23/202 (11%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+KI KT+ ++ V D+K KI+ Q +P Q LIY GK+L D +++
Sbjct: 1 MVKITFKTV-----------QNKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSV 46
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E K+ E F+V+M+++ K P + A+ A+ AVP +
Sbjct: 47 ESLKIKEKDFLVVMVSRPKATPAATPAAPATPAAPSTPAPAAAASEEASVANPAVPAPSA 106
Query: 121 PTPAPTPAPASASVSSVSATS--ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P+ PAPASA + + +S ESG+ G + V G L+ AI +++MG ++RD
Sbjct: 107 PSAESAPAPASAPAAEPAQSSAVESGLGG----SFVTGPALQAAIDGMVEMG---FERDQ 159
Query: 179 VVRALRAAYNNPERAVEYLYSG 200
V+RALRA++NNP+RAVEYL SG
Sbjct: 160 VIRALRASFNNPDRAVEYLMSG 181
>gi|156837209|ref|XP_001642636.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156113188|gb|EDO14778.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 404
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 24/213 (11%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I K K ++++ TV D K +I + + +Q LIY GKVL++D+T+
Sbjct: 1 MVSITFKDFKKEKIPLDLEGSVTVLDAKKQIAVKKDCE---DSQIKLIYSGKVLQNDSTI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRST--------APTKAPQSSAPTPAATPATAPQ 112
+ + + V+ M++K K+ TG T +T + ++ P + Q
Sbjct: 58 GDCGLKDGDQVIFMISK-KKSTGTKVTEATPVAASTAADASATSVAAVAEPEQQTVASEQ 116
Query: 113 TAVPISTEPTPAPTPAPASASVSSVSAT-SESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
E P AP S+ G V G+ A+++I++MG
Sbjct: 117 ATESNGNEEAPQQEEAPQQGGQQEQVQVQSDEG--------FVVGSQRNEAVERIMEMG- 167
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204
++RD V RA+RAA+NNP+RAVEYL GIPE
Sbjct: 168 --YERDEVNRAMRAAFNNPDRAVEYLLMGIPEH 198
>gi|320586564|gb|EFW99234.1| uv excision repair protein [Grosmannia clavigera kw1407]
Length = 400
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 105/207 (50%), Gaps = 16/207 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E++P +T+ VK KI +G + Q LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQQKFVIEIEPSETIAAVKQKISDERG---WAPKTQKLIYSGKILKDEDTVE 57
Query: 62 ENKVAENSFVVIMLTKNK---RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
K+ E FVV ++ K K + + P +A +A A A A +A
Sbjct: 58 SYKIEEKGFVVCVVNKPKPAPVAESSSAASPSTPARASAVAATPAAPAAAAAASSAAIAQ 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P+PA +A ++ ATS + ++ G L+ AI + MG ++R
Sbjct: 118 AAVAATPSPAARAAGPTAGGATSYTD-----PNSFSVGPALQEAITNMEAMG---FERSQ 169
Query: 179 VVRALRAAYNNPERAVEYLYS--GIPE 203
+ A+RAAYNNP+RAVEYL + GIP+
Sbjct: 170 ISAAMRAAYNNPDRAVEYLLTLQGIPD 196
>gi|301118881|ref|XP_002907168.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
gi|262105680|gb|EEY63732.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
Length = 449
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 70/139 (50%), Gaps = 39/139 (28%)
Query: 152 NLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA 211
N+V+ + +QQ++DMG + D V ALRAA+NNPERAVEYL +GIPEQA
Sbjct: 145 NVVSDEQMSATVQQLVDMG---FPEDQVRSALRAAFNNPERAVEYLMTGIPEQAAA---- 197
Query: 212 RAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNS 271
P Q A V SSG +A G DV A SL+ LRN
Sbjct: 198 -----------------PAQTA-VPSSGASA--------GSDDV------ANSLEALRNH 225
Query: 272 PQFQVLRAMVQANPQLFPC 290
PQF LR +VQ+NP P
Sbjct: 226 PQFDALRQLVQSNPAALPA 244
>gi|408391366|gb|EKJ70745.1| hypothetical protein FPSE_09115 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P + + VK KI +G + Q LIY GK+LKDD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WQPQLQKLIYSGKILKDDETVG 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E FVV M+ K K PT + + P TPAA A A + +
Sbjct: 58 SYNIEEKGFVVCMVNKPK-PTKPAESSAAPPATPAAPPTRTPAAPAAPAQSASQQAAVPA 116
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP P S A SE S L G+ AI + MG ++R +
Sbjct: 117 TPTPQ--------RSADAGSEE------PSGLAMGSQRTEAIANMEAMG---FERSQIEA 159
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+NNP+RAVEYL +GIP+
Sbjct: 160 AMRAAFNNPDRAVEYLLNGIPD 181
>gi|321250146|ref|XP_003191705.1| uv excision repair protein rhp23 [Cryptococcus gattii WM276]
gi|317458172|gb|ADV19918.1| uv excision repair protein rhp23, putative [Cryptococcus gattii
WM276]
Length = 394
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 17/200 (8%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+KI KT+ ++ V D+K KI+ Q +P Q LIY GK+L D +++
Sbjct: 1 MVKITFKTV-----------QNKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSV 46
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E K+ E F+V+M+++ K P + A A+ + +
Sbjct: 47 ESLKIKEKDFLVVMVSRPKATPAATPAAPATPAAPSTPAPAPAPAPAASEQASVANPAVP 106
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
AP A A + S V + V G L+ AI +++MG ++RD V+
Sbjct: 107 APSAPAAESAPAPAVAAEPAQSSAVESGLGGSFVTGPALQAAIDGMVEMG---FERDQVI 163
Query: 181 RALRAAYNNPERAVEYLYSG 200
RALRA++NNP+RAVEYL SG
Sbjct: 164 RALRASFNNPDRAVEYLMSG 183
>gi|367027912|ref|XP_003663240.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
gi|347010509|gb|AEO57995.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
Length = 377
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 17/213 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P D + VK +I +G D Q LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQQKFVLDVEPTDLISAVKQRISEERGWD---PKHQKLIYSGKILKDEDTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E FVV ++ K K P + S++ + + A A +
Sbjct: 58 SYKIEEKGFVVCVVNKPKEPKPAPAAESSSSAAPATPAPAQSSTPAAPAAPVQASSTATA 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA SA+ ++++ G + +A N+E MG ++R +
Sbjct: 118 APATPTPNRSAAPATLATDPNQLAMGEQRAEAIA--NMEA-------MG---FERSQIDA 165
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAP 214
A+RAA+ NP+RAVEYL +GIPE +Q A AP
Sbjct: 166 AMRAAFFNPDRAVEYLLNGIPEH--LQQSASAP 196
>gi|401425983|ref|XP_003877476.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493721|emb|CBZ29011.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 429
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 100/213 (46%), Gaps = 17/213 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KT+ G +V+V+ T+ DVK +E D Y A L + G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLLE-----DEYEPASLRLCFNGAVLEDSKMLA 55
Query: 62 ENKVAENSFVVIMLTKNK--RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
+ + +N +V+ K K +P S + AP+SSAP +ATP A T V +T
Sbjct: 56 DAGIKDNDSLVLAGRKRKIPKPPAPQSAEPSKTEAAPESSAPASSATPPPAMSTPVLATT 115
Query: 120 EPTPAPTPAPASASVSSVSA--------TSESGVYGHAASNLVAGNNLEGAIQQILD--M 169
P + TP A +A ++ A+ + N G ++D
Sbjct: 116 SPATSATPVDPPAPAVPTAATAPAAPVASTTPAAPAVPAAPAASVTNTYGVAPNLIDEVA 175
Query: 170 GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
G DR+ + ALRAA+ N ERAVEYL+ GIP
Sbjct: 176 SMGFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
>gi|426219746|ref|XP_004004079.1| PREDICTED: UV excision repair protein RAD23 homolog B [Ovis aries]
Length = 336
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 92/203 (45%), Gaps = 26/203 (12%)
Query: 89 STAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
S P SS P PA+ P+ T P +++ S+ +S S ++
Sbjct: 53 SVTPASTTASSEPAPASVTKQEKPAERPVET-----PVATTPTSTDSTSGDSSRSNLFED 107
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 108 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 164
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
V P P + AP +S A SG L+FL
Sbjct: 165 AVVDPP------------PTASTGAPQSSVAAAAATTTA---TTTTASSGGHP---LEFL 206
Query: 269 RNSPQFQVLRAMVQANPQLFPCF 291
RN PQFQ +R ++Q NP L P
Sbjct: 207 RNQPQFQQMRQIIQQNPSLLPAL 229
>gi|46015810|pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 56/76 (73%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTK 77
E K+ E +FVV+M+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|289741355|gb|ADD19425.1| nucleotide excision repair factor NEF2 RAD23 component [Glossina
morsitans morsitans]
Length = 377
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 128/308 (41%), Gaps = 49/308 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KTL +F VE TV+D+K + + V P QQ LIY G+VL +D L+
Sbjct: 1 MKLTIKTLDQKTFYVEFDDTRTVWDLKSHLHKLPEVGVQPELQQ-LIYAGRVLDNDNALK 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP-QSSAPTPAATPATAPQTAVPISTE 120
+ E F+V+M K + T P + + +P+A T +T P E
Sbjct: 60 TYSIDERKFLVVMAKKAPPSAAAKEEVAAIKTAKPSEQTRASPSAAAETIKKTEEPKRQE 119
Query: 121 PTPAPTPAPASASVSSVS---------ATSESGVYGHAASNLVAGNNL-------EGAIQ 164
P PA +A+ + + A + N++ + E +Q
Sbjct: 120 KAKTPPPAAQAAASPAATPAATETQPLALDQELQQNPQHRNILEAMDFSPTAAASESLVQ 179
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
+I+ MG D V RAL A++NNP+RA+EYL GIP+ E P
Sbjct: 180 EIMSMGYAEAD---VRRALLASFNNPDRAIEYLIEGIPDFPEALP--------------- 221
Query: 225 QMPQPTQPAPVTSSGPNANPLD----LFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAM 280
P+ + P+ NP+ G G L+FLR P+F +R +
Sbjct: 222 ---------PLPTIQPDVNPVSGVTVAGIGSGGGGGGGGGAGSPLNFLREDPRFIQMRRV 272
Query: 281 VQANPQLF 288
++ P+L
Sbjct: 273 IRQRPELL 280
>gi|328865495|gb|EGG13881.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 204
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +K + + +V +++V ++K + +Q + A+ Q LIY GKVL++D L
Sbjct: 1 MKITIKNINKEVYTFDVTGDESVTELK---QLIQNKHSHQASWQTLIYGGKVLENDNKLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ EN F+V M+ K+P E T T A PA PAT P +
Sbjct: 58 TYNITENGFLVCMV---KKPKEE-----TVATTA-------PAVQPATTPVAPTSAPSTT 102
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ + + + + A+S S G+ S+ + G E AI +++M G +R+ V+R
Sbjct: 103 PASTSTPTNTPAPTPSPASSTSPSGGN--SSFIVGPEYEAAITNLMEMSGA--NREMVIR 158
Query: 182 ALRAAYNNPERAVEYLYSG 200
ALRA++NN ERA + L SG
Sbjct: 159 ALRASFNNAERAADILLSG 177
>gi|159162808|pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 56/76 (73%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 62 ENKVAENSFVVIMLTK 77
E K+ E +FVV+M+TK
Sbjct: 64 EYKIDEKNFVVVMVTK 79
>gi|326427437|gb|EGD73007.1| hypothetical protein PTSG_04716 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 103/214 (48%), Gaps = 40/214 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSD-VYPAAQQMLIYQGKVLKDDTTL 60
MK+ VK++K +F+VE V +K I + SD ++P AQ+ LI+ G++LKDD L
Sbjct: 1 MKVTVKSMKAGTFEVEADISKPVRLIKEAIYAEKKSDDLHPDAQR-LIFSGRLLKDDDVL 59
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E EN F+V+M KRP A+ PA + +E
Sbjct: 60 ESLNFKENDFLVVM--GGKRPA---------------------ASKPAADKKDTASSKSE 96
Query: 121 PTPAP--TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
TPA T P AS ++ S+T + G AAS E ++ + MG +DR
Sbjct: 97 ETPASSSTTEPKPASTTTSSSTPAAPSSGPAAS--------EESLNTLTAMG---FDRAQ 145
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
RAL AA+ N ERAVEYL +GIP A QP A
Sbjct: 146 AERALSAAFGNIERAVEYLQNGIPTSA--QPAAH 177
>gi|429853552|gb|ELA28621.1| nucleotide excision repair protein rad23 [Colletotrichum
gloeosporioides Nara gc5]
Length = 354
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 90/202 (44%), Gaps = 17/202 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P D + VK KI +G D P Q+ LIY GK+LKDD T+E
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLISAVKQKIAGEKGWD--PKDQK-LIYSGKILKDDDTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E FVV M+ NK + + ++
Sbjct: 58 SYKIEEKGFVVCMV--NKPKAPKPAPAESSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 115
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
AP S ++ S G ++A N+E MG ++R +
Sbjct: 116 XXXXXXAPRSTGGGDAASNDPSMAMGAQRQEVIA--NMEA-------MG---FERSQIDA 163
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+ NP+RAVEYL +GIPE
Sbjct: 164 AMRAAFYNPDRAVEYLLNGIPE 185
>gi|157872825|ref|XP_001684939.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
gi|68128009|emb|CAJ06783.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
Length = 425
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KT+ G +V+V+ T+ DVK +E D Y A L + G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSMMLA 55
Query: 62 ENKVAENSFVVIMLTKNKRP------TGEGSTRSTAP-TKAPQSSAPTPAATPATAPQTA 114
+ V +N +V+ K K P T E T AP + AP SS P PA + A A T
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAETPTTEAAPESSAPASSTPPPAMS-APALTTT 114
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD--MGGG 172
P ++ P + ++ ++ A+ + N G ++D G
Sbjct: 115 SPATSAAPVDPPAPAVPTAAAAPVTSTTPAGPAVPAAPAASTTNTYGVAPNLIDEVASMG 174
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 175 FEDRSQIALALRAAFMNVERAVEYLFEGIP 204
>gi|194764815|ref|XP_001964524.1| GF23005 [Drosophila ananassae]
gi|190614796|gb|EDV30320.1| GF23005 [Drosophila ananassae]
Length = 318
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 126/303 (41%), Gaps = 68/303 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++TL + +E+ V +K ++ ++ + P Q LIY G++++D L
Sbjct: 1 MKISIRTLDQRTIKLEMSDSQDVRALKQRLGSMPEVAI-PVESQQLIYGGRIMEDALPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPA-TAPQTAVPISTE 120
+ K+AE+ F+V+M K P A PA TA + VP
Sbjct: 60 DYKIAEDKFIVLMGKK------------------------MPPAKPAGTAAEENVP---- 91
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNN-LEGAIQQILDMGGGTWDRDTV 179
PTP T P+ + S + A E ++ ++ MG G + V
Sbjct: 92 PTPPLTAGPSETRTHEIPPLSPAPALVMAPPPAPPSMTPNEQRVRDLMAMGYGEQE---V 148
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
ALRA++N+PERA+EYL SGIP+ N+P QPA T+SG
Sbjct: 149 RAALRASFNHPERAIEYLISGIPQ-----------------NAP-------QPANATASG 184
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQ--VLRAMVQANPQLFPCFKSWGNK 297
P N L S A D LR +P+ VL + + +P F + ++
Sbjct: 185 PAPN--------LQPWMSDPRFARVRDMLRQNPELLEVVLSRLAETDPSAFEAIRDHQDE 236
Query: 298 ILS 300
LS
Sbjct: 237 FLS 239
>gi|119498549|ref|XP_001266032.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
gi|119414196|gb|EAW24135.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
Length = 360
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 129/262 (49%), Gaps = 34/262 (12%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
VK KI +G +V Q LIY GK+L+DD T+E + E F+V M++K K P+
Sbjct: 10 VKEKISKEKGWEV---PQLKLIYSGKILQDDKTIETYNIEEKGFIVCMVSKPKAPSS--- 63
Query: 87 TRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVY 146
+ P++AP S P+ AA A +A S P+ PA S + + + S +
Sbjct: 64 --AATPSQAP--STPSRAAASTPAAPSAPAPSAAPSAPAVPATPSPAAPAQAPADASAAF 119
Query: 147 GHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
+ S L++G+ E I Q+ MG + R + RA+RAA+ NP+RA+EYL +GIP+ +
Sbjct: 120 -NDPSALLSGSQSEAVISQMESMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPDNIQ 175
Query: 207 VQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAA------ 260
+ +A AA P + AP ++ G P++LF + G+G
Sbjct: 176 QEQQQQA---AAAAAPPAPSAPSGESAPSSTGGD--EPVNLF-EAAAQAGTGEGTGRGAR 229
Query: 261 --------GAGSLDFLRNSPQF 274
G +LDFLRN+P F
Sbjct: 230 AGAAGAGEGLPNLDFLRNNPHF 251
>gi|366995773|ref|XP_003677650.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
gi|342303519|emb|CCC71299.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
Length = 392
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 124/257 (48%), Gaps = 31/257 (12%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I K K + ++ +TV D K ++ + + +Q LIY GKVL+D TL
Sbjct: 1 MINITFKDFKKEKIPLALESTNTVLDAKTQLAQNKSCE---ESQIKLIYSGKVLQDAKTL 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E+ + + V+ M+ S + + TK ++ + T A P T +A E
Sbjct: 58 EDCGLKDGDQVIFMI----------SKKKSTTTKVTEAPSSTTATAPTTTTNSATNTPAE 107
Query: 121 PTPA---PTPAPASASVSSVSATSESGVYGHAAS-NLVAGNNLEGAIQQILDMGGGTWDR 176
+PA TPA A+ + AT+ SG A S V G+ + +++I++MG ++R
Sbjct: 108 VSPAAASETPAQLPATTEAAPATTSSGETSSAGSAGFVVGSQRDQTVERIMEMG---YER 164
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V ALRAA+NNP+RAVEYL GIPE + ARA AA T P TQ T
Sbjct: 165 EQVESALRAAFNNPDRAVEYLLMGIPENLQ----ARA-----AAPQETAAPSITQDVTTT 215
Query: 237 SSGPNANPL--DLFPQG 251
++ P DLF Q
Sbjct: 216 TASTEDAPAEEDLFAQA 232
>gi|157126297|ref|XP_001654581.1| uv excision repair protein rad23 [Aedes aegypti]
gi|108882553|gb|EAT46778.1| AAEL002077-PA [Aedes aegypti]
Length = 347
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 14/201 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPE-DTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
MKI +KTLK +F +EV E DTV +K K D YP +Q LIY GK+++DD L
Sbjct: 1 MKITIKTLKQEAFQIEVDVEKDTVRTLKEKFFQESKQD-YPVERQRLIYLGKIMEDDLPL 59
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+ + FVV+M NK+PT + + + + + + + A + Q +E
Sbjct: 60 SHYSLDDKKFVVVM---NKKPTTAPAEPAASSSATAPAESKSSTAKSESGAQ------SE 110
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T A + AP E ++++ +Q+I +MG + +
Sbjct: 111 ATAAASKAPEEKPKEQEKKEEEEKPKEDKKPEEPPQDDIQIKVQRITEMG---YSLEEAR 167
Query: 181 RALRAAYNNPERAVEYLYSGI 201
AL NNP+RAVEYL S I
Sbjct: 168 IALEICDNNPDRAVEYLLSEI 188
>gi|340054316|emb|CCC48612.1| putative UV excision repair RAD23 protein, fragment, partial
[Trypanosoma vivax Y486]
Length = 299
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 128/286 (44%), Gaps = 45/286 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +K + G + EV E TV D+K +E D Y + Y +VL+D T+E
Sbjct: 1 MRVILKGIDGIKHEYEVAAEATVHDIKKLME-----DEYTLESLRICYDNRVLEDSMTME 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + + +V + K+++ T ST + TK + SA A++ + V + + P
Sbjct: 56 GLGMRDRTVLVFVGRKHEKKTM--STATDVATKPSEGSARVSASSQSGQ----VNVESVP 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P S + + SA+S +N + I ++ MG DR V
Sbjct: 110 QSTATEVPQSVAHNPPSASS-------TETNPMLRGVDPALIDTVVSMG--FEDRTQVAL 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQM-PQPTQPAPVTSSGP 240
ALRAAY N +RAVE+L SGIP E R G +S M P P+ AP
Sbjct: 161 ALRAAYMNVDRAVEFLCSGIPSNVE-----RDLGPVFHDDSQHGMFPIPSSMAPAA---- 211
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQ 286
P GSG+A +L + P+F+ +R +V+ANPQ
Sbjct: 212 ------------PTEGSGSALEQALMAV---PRFEEIREIVRANPQ 242
>gi|114205486|gb|AAI11407.1| Rad23b protein [Rattus norvegicus]
Length = 225
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQA 219
E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P
Sbjct: 1 ENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP----- 52
Query: 220 ANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRA 279
P V++ P + + + +G L+FLRN PQFQ +R
Sbjct: 53 ------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQ 100
Query: 280 MVQANPQLFPCF 291
++Q NP L P
Sbjct: 101 IIQQNPSLLPAL 112
>gi|259155371|ref|NP_001158747.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223646842|gb|ACN10179.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223672703|gb|ACN12533.1| UV excision repair protein RAD23 homolog B [Salmo salar]
Length = 131
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 60/91 (65%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +++ P+ TV +K KIE +G D +P + Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP 92
+ K+ E +FVV+M++K K T + S AP
Sbjct: 61 DYKIDEKNFVVVMVSKAKSTTAASTPSSEAP 91
>gi|308510422|ref|XP_003117394.1| CRE-RAD-23 protein [Caenorhabditis remanei]
gi|308242308|gb|EFO86260.1| CRE-RAD-23 protein [Caenorhabditis remanei]
Length = 323
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 118/287 (41%), Gaps = 70/287 (24%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+ + +TL +F +E+ E T+ +VK + + +G D P Q+ LIY GK+L D T +
Sbjct: 3 LSVAFRTLTQLNFHLELNEEQTIAEVKALVASERGDDYAPELQK-LIYNGKILDDATKVG 61
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + FVV+ML K K AA PA+ ++ P+ E
Sbjct: 62 EVGFDSSKFVVVMLAKKK----------------------VTAAEPASTATSSAPVVQEN 99
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+ APA AS++ + + + E + I MG +DR+ +
Sbjct: 100 APSTPAAPAPASIADPVPAAPAAAEQLTSQQ-------EDTVSAITGMG---YDREQTIA 149
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+ N +RAVE+L +GIPE Q A AP + +
Sbjct: 150 ALRAAFWNADRAVEFLLTGIPEDVVDQEPLLA------------------DAPAVENEED 191
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
AN L+ L N PQ +R M+Q NP++
Sbjct: 192 AN-------------------DDLNMLANMPQLGEIRNMIQQNPEML 219
>gi|399218138|emb|CCF75025.1| unnamed protein product [Babesia microti strain RI]
Length = 334
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 123/291 (42%), Gaps = 80/291 (27%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVY--PAAQQMLIYQGKVLKDDTT 59
MK+ TLK VEV P DTV + KI GS + A++ LI+ GK+LK +
Sbjct: 1 MKLIACTLKNVETCVEVDPSDTVDALTNKI----GSSLNNASASKMRLIHAGKILKMEQK 56
Query: 60 LEE-NKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
+ + + + + ++++ +K E ST + PT AP S TP A T+P
Sbjct: 57 ISDYSDIKDGDKIIVLFSKQ----SEASTIAN-PTPAPTS---TPIADANTSP------- 101
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P P PT P + L+ G LE AI I++MG +D ++
Sbjct: 102 --PKPIPTTDPNA---------------------LLMGEELEKAINGIVEMG---FDVES 135
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V A+ AA+NNP RA+E L + EV ++ T T + T
Sbjct: 136 VKAAMSAAFNNPNRAIELL-----TRHEV----------DVSDHDTHQSVQTTVSISTIC 180
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFP 289
N +G LD LR P F+ +RA+V++NPQ P
Sbjct: 181 YKNHEL-----------------SGVLDELRQHPMFEQMRAIVRSNPQTLP 214
>gi|150864814|ref|XP_001383791.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
gi|149386070|gb|ABN65762.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
Length = 366
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 130/298 (43%), Gaps = 48/298 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ K K +EV+ DTV K K+ + + A Q +Y GKVL D+ TLE
Sbjct: 1 MQVIFKDFKKQKVPLEVELTDTVLATKEKLAAEKDCE---APQLKFVYSGKVLSDEKTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+ E ++ M++K K+ + T + + S+ TP +T AT + E
Sbjct: 58 EFKIKEGDSIIFMISKAKKTPTPAPAAAPITTTSSEQSSATPGSTTATTTTGNAEAAPES 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ P+ A S A+ IQ I++MG + R V
Sbjct: 118 STTSEPSSTFAQGSEREAS----------------------IQNIMEMG---YQRAEVEN 152
Query: 182 ALRAAYNNPERAVEYLYSGIPEQA---EVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
ALRAA+NNP RAVEYL +GIP+ EV P A AP A ++ ++ Q
Sbjct: 153 ALRAAFNNPHRAVEYLLTGIPQSLQRPEV-PAAVAP---VADSTHEELAQDHDIDDGEEQ 208
Query: 239 GPNANPLDLFPQGLPDV----GSGA----AGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
G N LF G+GA A G L + + Q +LRA +Q+NP+L
Sbjct: 209 GEN-----LFEAAAAAQARSQGAGAVEQPATGGGLAEMGDDEQMNLLRASLQSNPELI 261
>gi|340959556|gb|EGS20737.1| putative excision repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 376
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 103/210 (49%), Gaps = 15/210 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +K LK F VE +P D + VK KI QG D P +Q+ LIY GK+LKD+ T+E
Sbjct: 1 MKITIKDLKQNKFTVEAEPTDLISTVKQKIADSQGWD--PKSQK-LIYSGKILKDEDTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E FVV ++ K K ++ AP + AP +TPA A + P
Sbjct: 58 SYKIEEKGFVVCVVQKPKAEPKSAPAAGSSSAAAPATPAPAQTSTPAAPAAPAPAAAPAP 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T A PA + + + A + A+ A N+E MG D +R
Sbjct: 118 TAAAAPATPTPTRTDPEAFRDPNSLAIGAARAEAIANMEA-------MGFERSQIDIAMR 170
Query: 182 ALRAAYNNPERAVEYLYSGIP--EQAEVQP 209
AA+NNPERAVEYL +GIP Q E QP
Sbjct: 171 ---AAFNNPERAVEYLLNGIPPHLQQEAQP 197
>gi|258644511|dbj|BAI39766.1| osRAD23-like [Oryza sativa Indica Group]
gi|258644734|dbj|BAI39979.1| osRAD23-like [Oryza sativa Indica Group]
Length = 88
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
MGGG WDRDTV+ A RAAYNNPERA+EYLY+G+PEQAE
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQAE 38
>gi|34015239|gb|AAQ56432.1| putative DNA repairing protein [Oryza sativa Japonica Group]
gi|35210523|dbj|BAC92639.1| unknown protein [Oryza sativa Japonica Group]
gi|35215224|dbj|BAC92575.1| unknown protein [Oryza sativa Japonica Group]
Length = 88
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
MGGG WDRDTV+ A RAAYNNPERA+EYLY+G+PEQAE
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQAE 38
>gi|357504261|ref|XP_003622419.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
gi|355497434|gb|AES78637.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
Length = 176
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 24 VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK-NKRPT 82
+ DVK IE +Q D YP QQ+LI+ GKVLKD+TTL +N+V+E+ F+V+ML+K N R
Sbjct: 77 IMDVKTNIEDIQEKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSKVNNRSM 136
Query: 83 G 83
G
Sbjct: 137 G 137
>gi|297811745|ref|XP_002873756.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
gi|297319593|gb|EFH50015.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
Length = 134
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 5/61 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKGT F++EVKP D+ IETV G+ YPAAQQ+LI++GK L+D+ T+E
Sbjct: 1 MKIIVKTLKGTRFEIEVKPNDS-----KNIETVLGASEYPAAQQILIHKGKKLRDEATME 55
Query: 62 E 62
E
Sbjct: 56 E 56
>gi|4336714|gb|AAD17913.1| repC-binding protein A [Dictyostelium discoideum]
Length = 341
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 115/315 (36%), Gaps = 93/315 (29%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +K + + EV + TV ++K I + Q LIY GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ ++ F+ +M+ K P +AP A TPA P+T P IST
Sbjct: 58 SYNITDSGFIXMMIKK--------------PREAP---ATTPA--PSTTPHLNY-ISTNH 97
Query: 122 TPAPTPAP---------------------------ASASVSSVSATSESGVYGHAASNLV 154
P +S + S S +S+
Sbjct: 98 HHYCRTNPNHXLTNNTSTTTPTSVPTPTNNTPATPNPTPTTSSTPGSTSTTSPQQSSDFA 157
Query: 155 AGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAP 214
G LE I+ I DMG + RD V+RALR +NN ERA+EYL S
Sbjct: 158 TGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVS--------------- 199
Query: 215 GNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQF 274
GN AAN P + NP + LRN P F
Sbjct: 200 GNIPAANDPEDEEEMEGGGGSGD-----NPFEA--------------------LRNHPHF 234
Query: 275 QVLRAMVQANPQLFP 289
+LR + NP + P
Sbjct: 235 NLLREAISKNPSIIP 249
>gi|212645665|ref|NP_496488.2| Protein RAD-23 [Caenorhabditis elegans]
gi|194686136|emb|CAA93780.2| Protein RAD-23 [Caenorhabditis elegans]
Length = 323
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 119/288 (41%), Gaps = 70/288 (24%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
++ + +TL +F++E+ + T+ +VK + + +G D P Q+ LIY GK+L D +
Sbjct: 2 VLSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQK-LIYNGKILDDSVKV 60
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + FVV+ML+ KR E AP S+ T A A A +
Sbjct: 61 GEVGFDSSKFVVVMLS--KRKVTE---------VAPSSTVATAAEPVPVAAAPASNPAPA 109
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
AP A + + + E+ +L + G +DR+ +
Sbjct: 110 ADVAPEAAAPAEAEALTDEQEEN----------------------VLAITGMGYDREQTI 147
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAA+ NP+RAVE+L +G+P+ A Q P
Sbjct: 148 AALRAAFWNPDRAVEFLLNGLPDDAADQE------------------------------P 177
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
+ P Q + +V G L+ L N PQ +RA++Q NP++
Sbjct: 178 DLGP----EQNIDNVDED--GNDDLNMLANMPQLAEIRALIQQNPEML 219
>gi|403221228|dbj|BAM39361.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 323
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 126/291 (43%), Gaps = 70/291 (24%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQ---QMLIYQGKVLKDDT 58
M + VKTLK +VEV TV D+ ++E ++ P Q Q LI+ GK+LK +
Sbjct: 1 MNLKVKTLKNVEVEVEVAESATVEDLMKRVE-----ELLPNMQANSQKLIHAGKILKREL 55
Query: 59 TLEEN-KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPI 117
L + + E ++++ S+ T++ + + P +T A A V
Sbjct: 56 LLSDYPDIKEGDKIIVI--------------SSKKTESAKPAEPKLDSTSAVATPPKVET 101
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
+TE + P A+ +VS S S S S LV G+ L+ I +I +MG +DR
Sbjct: 102 ATENSQN-LPRTATPNVSQESHQSPS-------SRLVMGSELDQNINRICEMG---FDRA 150
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
+V RA+ AA+NNPERAVE+L +G +P P T
Sbjct: 151 SVERAMAAAFNNPERAVEFLSTG------------------------NIPSVNLENPGTQ 186
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
+ P + A G L++ P F+ +R VQ++PQL
Sbjct: 187 NTP------------AEQAENAGGEDVFRMLQSHPMFEQIRQAVQSDPQLL 225
>gi|363751284|ref|XP_003645859.1| hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889493|gb|AET39042.1| Hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
Length = 443
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 33/225 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+ I K K +++ P T+ + K + + D +Q +I+ GKVL+D TL+
Sbjct: 3 ITINFKDFKKEKLPLQLSPTATIAEAKQLLAKEKQCD---ESQLKMIFSGKVLQDGHTLD 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ + V+ M++K K G+ S A T + T AA P AV S++
Sbjct: 60 ACKLKDGDQVIFMISKKKT----GTLMSPAATTTSTETKVTEAAAPGI---RAVESSSDK 112
Query: 122 TPAPTPAPASASVSSVSAT-----------------SESGVYGHAASNLVAGNNLEGAIQ 164
AP ++++ +++ S+S H V G+ I+
Sbjct: 113 AKKTAGAPEGTAMAATTSSAVAAVDAGAAQPTNTTGSDSNPPDHG---FVTGSQRNETIE 169
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
+I++MG ++R V ALRAA+NNP+RAVEYL GIPE + P
Sbjct: 170 RIMEMG---YERSQVESALRAAFNNPDRAVEYLLMGIPEHLQAAP 211
>gi|351700121|gb|EHB03040.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 140
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
+ +KTL+ +F +++ PE+TV + KIE+ +G D +P A Q LIY GK+L DD T++E
Sbjct: 55 VTLKTLQQQTFKIDIDPEETVKALNEKIESEKGKDAFPVAGQKLIYAGKILNDD-TVKEY 113
Query: 64 KVAENSFVVIMLTKNK 79
K+ E +FVV M+TK K
Sbjct: 114 KIDEKNFVVFMVTKPK 129
>gi|298707279|emb|CBJ25906.1| UV excision repair protein RAD23B homolog [Ectocarpus
siliculosus]
Length = 466
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+K+ VKT+KG F +EV+ TV +VK IE +PAAQ LI+ G++LKD+ TL
Sbjct: 1 MVKLTVKTIKGKKFQIEVEQTQTVREVKGVIEEQNAE--FPAAQLKLIHSGQILKDECTL 58
Query: 61 EENKVAENSFVVIMLTK 77
E K+ E F+V M+TK
Sbjct: 59 AEYKIKEEEFLVCMVTK 75
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++Q+ +MG + D V ALRAA NP+ AVE+L +GIP+
Sbjct: 119 VRQLTEMG---FPEDQVTAALRAAMGNPDVAVEFLMTGIPD 156
>gi|72390575|ref|XP_845582.1| UV excision repair RAD23 protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358793|gb|AAX79246.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei]
gi|70802117|gb|AAZ12023.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328991|emb|CBH11969.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 356
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 126/307 (41%), Gaps = 78/307 (25%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +K++ G + EV P+ V D+K +E+ Y L Y +VL+D T+E
Sbjct: 1 MRIILKSVLGKKREHEVSPDTKVEDIKKFLESE-----YTPQSLRLCYNNRVLEDPMTME 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA-----TPATAPQTAVP 116
+ + E++ +V + K+ + + + +P + A PA P A ++VP
Sbjct: 56 QLGIGEDTVIVYV---GKKQSVQQLASKSGGCASPSAPAEGPAKGELNENPGVAGASSVP 112
Query: 117 ISTEPTPAPTPA------------PASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQ 164
+ PAP+P+ PA AS+ SV I
Sbjct: 113 VDV---PAPSPSAQAPATTQQPSGPAPASLRSVDPA---------------------LID 148
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP---EQAEVQPVARAPGNGQAAN 221
I+ MG DR+ V ALRAAY N +RAVE+L +GIP +Q + +A G+AA
Sbjct: 149 SIVAMGFN--DREQVSLALRAAYMNADRAVEFLCTGIPPHVQQQLAEADLQASAMGRAA- 205
Query: 222 SPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMV 281
P + P+ D GSG + L P R+++
Sbjct: 206 -----------VPSAGTPPS------------DAGSGGTQSDLRRALSAIPHIDDFRSLL 242
Query: 282 QANPQLF 288
Q NPQ F
Sbjct: 243 QNNPQAF 249
>gi|323451497|gb|EGB07374.1| hypothetical protein AURANDRAFT_53989 [Aureococcus anophagefferens]
Length = 371
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 98/204 (48%), Gaps = 27/204 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + VKTL+G F VE PE T+ VK IE Q AA LI+ GKVLKD+ TL
Sbjct: 1 MLVAVKTLEGRLFKVEAAPESTIGAVKGLIEASQPE--LKAAAMKLIHSGKVLKDEDTLA 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ V E SF+V M+TK KR + AP A +AP P+ +AP +
Sbjct: 59 DKGVTEQSFLVCMVTKPKRAAAPKPAAAPAPAPAAAPAAPPPSTPAPSAPAPTPAPAPAE 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TPA +PA +S T+E A+ Q+ MG G D+
Sbjct: 119 TPAGLQSPA----ASPHVTAE-------------------ALAQLDAMGFGHADQSRA-- 153
Query: 182 ALRAAYNNPERAVEYLYSGIPEQA 205
AL AA N + AVE+L +GIP++A
Sbjct: 154 ALEAAMGNVDLAVEFLMNGIPDEA 177
>gi|320166179|gb|EFW43078.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 331
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 74/156 (47%), Gaps = 26/156 (16%)
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
A+ LV + E I Q+++ G ++RD VVRALRAA+NNP+RA EYL++GIP E Q
Sbjct: 77 ANALVVDEDQERVILQLMEFG---FERDQVVRALRAAFNNPDRAAEYLFNGIPRHVE-QA 132
Query: 210 VA-----------RAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG 258
+A + Q Q PAP G DLF D G
Sbjct: 133 LAQQIGGGAHQQQQPQQPQAQQQQQGQPTQTQAPAPAQLGG------DLFAGDYEDEGDE 186
Query: 259 AAGAGS-----LDFLRNSPQFQVLRAMVQANPQLFP 289
+ L+FLR+ PQF LR +VQ NP L P
Sbjct: 187 GEDEDADGPNPLEFLRSQPQFDQLRQLVQQNPNLLP 222
>gi|154342013|ref|XP_001566958.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064283|emb|CAM40483.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 433
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 102/234 (43%), Gaps = 55/234 (23%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KT+ G +V+V+ T+ DVK + D Y A L + G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLL-----VDEYEPASLRLCFNGAVLEDSKILA 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTK---APQSSAPTPAATPATAPQTAVPIS 118
+ V +N F+V+ K K P S S P K AP+ SAP A TAP A+P S
Sbjct: 56 DAGVKDNDFLVLAGRKRKIPK-PASMPSAEPQKTEAAPEFSAPLSA----TAPPPAMPTS 110
Query: 119 TEPTPAPTPAPASASV------------------------------SSVSATSESGVYGH 148
T + + A A S++ S + +YG
Sbjct: 111 ASTTTSTADSAAPAVPAATTAPATAPAPAPAPAPAPAPVAPTPPAGSAIPVASAASIYG- 169
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
A NL I ++ MG DR+ + ALRAA+ N +RAVEYL+ GIP
Sbjct: 170 VAPNL---------IDEVAAMG--FEDRNQIALALRAAFMNVDRAVEYLFDGIP 212
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 124 APTPAPASASVSSVSATSESGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
AP + AS + +V +E G + + A L A + + A+QQ++++GGG WD + V
Sbjct: 329 APPGSVASPTAEAVVGDTEEGSFMNELQAGVELTAEDRM--AVQQLVELGGGMWDEQSAV 386
Query: 181 RALRAAYNNPERAVEYLYS--GIPEQ 204
A N E A L+ G+P +
Sbjct: 387 LVYLATQRNQEVAASVLFEHGGVPAE 412
>gi|311771876|pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain
Of Hhr23a (Human Homologue A Of Rad23)
Length = 85
Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 8 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67
Query: 64 KVAENSFVVIMLTKNK 79
++ E +FVV+M+TK K
Sbjct: 68 RIDEKNFVVVMVTKTK 83
>gi|146094144|ref|XP_001467183.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
gi|134071547|emb|CAM70236.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
Length = 429
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 103/213 (48%), Gaps = 17/213 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KT+ G +V+V+ T+ DVK +E D Y A L + G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTK--APQSSAPTPAATPATA--------- 110
+ V +N +V+ K K P + P AP+SSAP +ATP A
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATPPAAMPTPALTTT 115
Query: 111 PQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
+ +P PA A+A + V++T+ + AAS A N ++ I ++
Sbjct: 116 TPATSAATVDPPAPAVPASAAAPSAPVASTTPAASAVPAASAASATNTYGVSLNLIDEVA 175
Query: 171 G-GTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
G DR+ + ALRAA+ N ERAVEYL+ GIP
Sbjct: 176 SMGFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
>gi|37927447|pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of
Hhr23a
gi|37927452|pdb|1P9D|U Chain U, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 78
Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 52/76 (68%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+ I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 62 ENKVAENSFVVIMLTK 77
+ ++ E +FVV+M+TK
Sbjct: 63 DYRIDEKNFVVVMVTK 78
>gi|393245007|gb|EJD52518.1| UV excision repair protein Rad23 [Auricularia delicata TFB-10046
SS5]
Length = 375
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTL+ F ++ +P DTV D+K KI+ Q +P Q LIY GKVL DD T+E
Sbjct: 1 MKITVKTLQQKQFQIDAEPSDTVADLKSKIKDTQN---HPVEHQKLIYSGKVLADDKTIE 57
Query: 62 ENKVAENSFVVIMLT 76
++ E F+V+M++
Sbjct: 58 SCQIKEKDFLVLMVS 72
>gi|326480573|gb|EGE04583.1| nucleotide excision repair protein RAD23 [Trichophyton equinum
CBS 127.97]
Length = 255
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++ +P D + DVK KI T +G +PA+QQ LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 62 ENKVAENSFVVIML 75
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|90078929|dbj|BAE89144.1| unnamed protein product [Macaca fascicularis]
Length = 217
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 20/127 (15%)
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T
Sbjct: 4 EIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--T 55
Query: 225 QMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
PQ + A ++ + ++G L+FLRN PQFQ +R ++Q N
Sbjct: 56 GAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQN 103
Query: 285 PQLFPCF 291
P L P
Sbjct: 104 PSLLPAL 110
>gi|398019764|ref|XP_003863046.1| UV excision repair RAD23-like protein [Leishmania donovani]
gi|322501277|emb|CBZ36356.1| UV excision repair RAD23-like protein [Leishmania donovani]
Length = 429
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 103/213 (48%), Gaps = 17/213 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KT+ G +V+V+ T+ DVK +E D Y A L + G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTK--APQSSAPTPAATPATA--------- 110
+ V +N +V+ K K P + P AP+SSAP +ATP A
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATPPAAMPTPALTTT 115
Query: 111 PQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
+ +P PA A+A + V++T+ + AAS A N ++ I ++
Sbjct: 116 TPATSAATVDPPAPAVPASAAAPSAPVASTTPAASAVPAASAASATNTYGVSLNLIDEVA 175
Query: 171 G-GTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
G DR+ + ALRAA+ N ERAVEYL+ GIP
Sbjct: 176 SMGFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
>gi|71410028|ref|XP_807329.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70871306|gb|EAN85478.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 121/303 (39%), Gaps = 60/303 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++++ G+ EV P+ V VK +E D Y L Y G +L++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAILENSKTMT 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E V EN+ V ++ NKR P P +SAP PQT S EP
Sbjct: 56 ELGVKENA--VFIIAGNKR-------NKNKPQAKPATSAP--------PPQTKTNSSFEP 98
Query: 122 T-------PAPTPAPASASVSSVSATSESGVYG------HAASNLVAGNNLEGAIQQILD 168
T PA++ G AA + G L G ++D
Sbjct: 99 TSVGRGQWEGAITDPATSGAGGAPGGIAESRQGAEPPPSEAAPS--QGLALHGIDPTLVD 156
Query: 169 --MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQM 226
+ G DR+ V ALRAAY NP+RAVE+L +GIP Q N P
Sbjct: 157 NIIAMGFEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL-----------QRMNEPAIN 205
Query: 227 PQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQ 286
P SS ++ D + S +A + L PQF +R++VQANP+
Sbjct: 206 PS-------ASSERMSSLTDRLTSHMRQDDSDSALYNA---LMQIPQFGEIRSIVQANPE 255
Query: 287 LFP 289
P
Sbjct: 256 SLP 258
>gi|24638593|ref|NP_726561.1| Rad23, isoform B [Drosophila melanogaster]
gi|22759400|gb|AAN06526.1| Rad23, isoform B [Drosophila melanogaster]
Length = 343
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 24/152 (15%)
Query: 137 VSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEY 196
+ +++ + A SNL+ G+ + +++MG + R+ V RA+ A+YNNPERAVEY
Sbjct: 66 IGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEY 122
Query: 197 LYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVG 256
L +GIP + + +P+ +P QPA TS+
Sbjct: 123 LINGIPAEE-----GTFYNRLNESTNPSLIPSGPQPASATSAE----------------R 161
Query: 257 SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
S + + +FLR+ PQF +R+++ NP L
Sbjct: 162 STESNSDPFEFLRSQPQFLQMRSLIYQNPHLL 193
>gi|357501513|ref|XP_003621045.1| RAD23-like protein [Medicago truncatula]
gi|355496060|gb|AES77263.1| RAD23-like protein [Medicago truncatula]
Length = 142
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198
G YG A SNL+AG+ LE IQQI D+G RD V+RAL AAYNNPER VEYLY
Sbjct: 60 GTYGKAESNLIAGSTLEPTIQQI-DIGRKL-VRDIVIRALSAAYNNPERTVEYLY 112
>gi|281207510|gb|EFA81693.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 220
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 94/200 (47%), Gaps = 10/200 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++ + + +V E+ V +K E + + Q LIY GK+L++D L
Sbjct: 1 MKVTIRNVNKEVYTFDVTGEEKVIQLK---EMIADKHKHLPTWQTLIYSGKILENDNQLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ EN F+V M+ K+P E + T AP+ T +T T
Sbjct: 58 TYNITENGFIVCMV---KKPKEESTPAPPTTTTTAAPQAPSSTTTTSTPQAATPAAPTTT 114
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASN-LVAGNNLEGAIQQILDMGGGTWDRDTVV 180
PTP P + S + + + + S V+G E ++QI DMG + RD +
Sbjct: 115 PIQPTPTPTATSTPTTTPSPATATSPQRDSTGFVSGPEYELIVKQIEDMG---FSRDDIT 171
Query: 181 RALRAAYNNPERAVEYLYSG 200
RALRA+YNNPERAVE L +G
Sbjct: 172 RALRASYNNPERAVELLLTG 191
>gi|443716613|gb|ELU08047.1| hypothetical protein CAPTEDRAFT_227723 [Capitella teleta]
Length = 335
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 62/118 (52%), Gaps = 30/118 (25%)
Query: 102 TPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVY--------------- 146
TP TPA Q P+S PAPA+A+ S+ +S +
Sbjct: 41 TPTETPAAVDQ---PMS--------PAPAAATTESMETSSPATEVVTEATPADAPPAAVQ 89
Query: 147 -GHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
A S LV G + E +Q+++ MG + RD VVRALRA++NNP+RAVEYL SGIP+
Sbjct: 90 PESAESTLVTGESYEQTVQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPD 144
>gi|363746935|ref|XP_003643857.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Gallus
gallus]
Length = 214
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 64/133 (48%), Gaps = 40/133 (30%)
Query: 154 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE--QAEVQPVA 211
V G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP +AE PV
Sbjct: 11 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEAERPPV- 66
Query: 212 RAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNS 271
Q + +P Q P P NPL+ FLR
Sbjct: 67 ------QESRAPEQ--------PQVEGQPGENPLE--------------------FLREQ 92
Query: 272 PQFQVLRAMVQAN 284
PQFQ +R ++Q N
Sbjct: 93 PQFQNMRQVIQQN 105
>gi|407851853|gb|EKG05558.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 116/301 (38%), Gaps = 56/301 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++++ G+ EV P+ V VK +E D Y L Y G + ++ T+
Sbjct: 1 MKIILRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 62 ENKVAENSFVVIMLTKNKR------------PTGEGSTRSTAPTKAPQSSAPTPAATPAT 109
E V EN+ +I K + P + S PT PAT
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSLPPPQAKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 110 APQTAVPIS-TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD 168
+ P TEP P P+ + S G+ H + N I+
Sbjct: 116 SGAGGAPGGITEPRQGAEPPPSEEAPSQ-------GLALHGVDPTLVDN--------IIA 160
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
MG DR+ V ALRAAY NP+RAVE+L +GIP Q N P P
Sbjct: 161 MG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL-----------QRMNEPAINPS 207
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
SS ++ D + S +A + L PQF +R++VQANP+
Sbjct: 208 -------ASSERMSSLTDRLTSHMRQDDSDSA---LYNALMQIPQFGEIRSIVQANPESL 257
Query: 289 P 289
P
Sbjct: 258 P 258
>gi|67466741|ref|XP_649512.1| RAD23 protein [Entamoeba histolytica HM-1:IMSS]
gi|56465972|gb|EAL44126.1| RAD23 protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707323|gb|EMD47005.1| RAD23 protein, putative [Entamoeba histolytica KU27]
Length = 314
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 34/202 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDT-VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT-T 59
MKI VKT++G + E++PE T V ++K I QG D+ + LIY+ ++LKD+
Sbjct: 1 MKIIVKTIQGILNEYEIEPETTTVGELKGMINAKQGIDIQNIS---LIYKSRMLKDNAQN 57
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
L + E +V+++ K S+ P P P T P+T ST
Sbjct: 58 LGGLGINEGDSIVMVVKK--------------------SAVPPPKLAPVTQPETH---ST 94
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
EP PT P + + S T ++ V E I +++MG + RD
Sbjct: 95 EPIQQPTTQPITTNQPS---TQPVDIFQSQQRQTVNVEPTEENINHLVEMG---FLRDDA 148
Query: 180 VRALRAAYNNPERAVEYLYSGI 201
++ALR + NN A ++L SG+
Sbjct: 149 IKALRKSQNNTAIAADFLISGV 170
>gi|71416587|ref|XP_810308.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70874820|gb|EAN88457.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 120/301 (39%), Gaps = 56/301 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++++ G+ EV P+ + VK +E D Y L Y G + ++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNIETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP---TKAPQSSAPTPAAT---------PAT 109
E V EN+ +I K + + ++ P TK S PT PAT
Sbjct: 56 ELGVQENAVFIIAGNKRNKNKPQAKPATSVPPPQTKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 110 APQTAVPIS-TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD 168
+ TEP P P+ A+ S G+ H + N I+
Sbjct: 116 SGAGGASGGITEPQQGAEPPPSEAAPSQ-------GLALHGVDPTLVDN--------IIA 160
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
MG DR+ V ALRAAY NP+RAVE+L +GIP Q N P P
Sbjct: 161 MG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL-----------QRMNEPAINPS 207
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
SS ++ D + S +A + L PQF +R++VQANP+
Sbjct: 208 -------ASSERMSSLTDRLTSHMRQDDSDSA---LYNALMQIPQFGEIRSIVQANPESL 257
Query: 289 P 289
P
Sbjct: 258 P 258
>gi|302834487|ref|XP_002948806.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
gi|300265997|gb|EFJ50186.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
Length = 366
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 3/56 (5%)
Query: 146 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201
Y AAS L+AG+ LE AI I +MG + R+ V+RA+RAA+NNP+RAVEYL +GI
Sbjct: 113 YTAAASGLLAGSALETAIANICEMG---FAREEVIRAMRAAFNNPDRAVEYLMTGI 165
>gi|336371729|gb|EGO00069.1| hypothetical protein SERLA73DRAFT_167911 [Serpula lacrymans var.
lacrymans S7.3]
Length = 380
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 44/164 (26%)
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ-- 208
++ V G L ++ +++MG ++R+ V+RALRA+YNNP+RAVEYL++GIP E +
Sbjct: 135 NSFVTGEVLNTTVRNMMEMG---FEREQVMRALRASYNNPDRAVEYLFNGIPAHLEAEAA 191
Query: 209 --------------------PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP---NANPL 245
P N P + Q Q GP ANP
Sbjct: 192 GPAAPPAQPPAGGGAAPAAAPAPAPQPAVPPPNQPQNLFQLAQQQQQQQQGPATGGANPF 251
Query: 246 DLFPQGLPDVGSGAAGAGSLDF--LRNSPQFQVLRAMVQANPQL 287
GAG +D LR++PQ Q LR +V ANPQL
Sbjct: 252 --------------GGAGPIDMAALRDNPQVQHLRELVAANPQL 281
>gi|426387417|ref|XP_004060165.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 3
[Gorilla gorilla gorilla]
gi|194375626|dbj|BAG56758.1| unnamed protein product [Homo sapiens]
Length = 198
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 37/120 (30%)
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
+I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S
Sbjct: 4 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQV 53
Query: 225 QMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
QPA + AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 54 ----SEQPA-----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 86
>gi|46124779|ref|XP_386943.1| hypothetical protein FG06767.1 [Gibberella zeae PH-1]
Length = 359
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 88/202 (43%), Gaps = 43/202 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P + ++QGK+LKDD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSE-------------------------LFQGKILKDDETVG 35
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E FVV M+ K K PT + + P TPAA A A + +
Sbjct: 36 SYNIEEKGFVVCMVNKPK-PTKPAESSAAPPATPAAPPTRTPAAPAAPAQSASQQAAVPA 94
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP P S A SE S L G+ AI + MG ++R +
Sbjct: 95 TPTPQ--------RSADAGSEE------PSGLAMGSQRTEAIANMEAMG---FERSQIEA 137
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+NNP+RAVEYL +GIP+
Sbjct: 138 AMRAAFNNPDRAVEYLLNGIPD 159
>gi|443919043|gb|ELU39338.1| UBA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 886
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 6/68 (8%)
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
G +G +S VAG L AI+ ++ MG ++R+ ++RALRA++NNP+RAVEYL +GIPE
Sbjct: 158 GAFGDTSS-FVAGGALNSAIENMMGMG---FEREQIMRALRASFNNPDRAVEYLLTGIPE 213
Query: 204 Q--AEVQP 209
AE P
Sbjct: 214 HLLAETAP 221
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 86/194 (44%), Gaps = 36/194 (18%)
Query: 15 DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD-TTLEENKVAENSFVVI 73
+V++ P+DT+ +++ K+ + + A L+Y G+ L DD T+E + EN ++ I
Sbjct: 517 EVDIDPQDTILNLREKVGILAE---HRANILKLLYAGRTLADDQKTIESLNLKENHWIFI 573
Query: 74 MLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASAS 133
L + + +T+ T P +S PT AP
Sbjct: 574 QLLQTHEFVS--AQANTSATSEPTASLPT-----------------------LNAPEHPR 608
Query: 134 VSSVSATSESGVYGHAASNLVAGNNLEGAI------QQIL-DMGGGTWDRDTVVRALRAA 186
+ + S+ H + + + G+ G+ QQI+ D+ + D+D +V+AL+A+
Sbjct: 609 EGGIDSKSDEIQQIHTSPHGIKGSGYTGSFTARATPQQIVKDLVYMSSDQDELVQALKAS 668
Query: 187 YNNPERAVEYLYSG 200
+ + ERA + +G
Sbjct: 669 FRDSERATKRAATG 682
>gi|84998362|ref|XP_953902.1| DNA repair protein (RAD23 ) [Theileria annulata]
gi|65304900|emb|CAI73225.1| DNA repair protein (RAD23 homologue), putative [Theileria annulata]
Length = 328
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 131/292 (44%), Gaps = 71/292 (24%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQ---MLIYQGKVLKDDT 58
M + VKTLK DV+V +V D+ K+ ++ +P Q LI+ GK+LK +
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQADSLKLIHAGKILKKEL 55
Query: 59 TLEE-NKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPI 117
L++ + + + V+++ +K P+ ++ P P SS TP + P PQ
Sbjct: 56 LLKDYSDIKDGDKVIVISSKTSDPS-----KNQDPNSQP-SSTTTPTSKP---PQP---- 102
Query: 118 STEPTPAPTP-APASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
PT TP P+S +V S Y + +S V G+ LE +I +I +MG ++R
Sbjct: 103 ---PTQDDTPNQPSSGNVVS------EQTYENVSSKFVMGSELEQSINRICEMG---FER 150
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
V RA+ AA+NNP+RAVE+L + GN A+N P
Sbjct: 151 PLVERAMAAAFNNPDRAVEFL---------------STGNIPASNMP------------- 182
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
NA L G P AG L L++ P F+ L V+++P L
Sbjct: 183 --NINAQNLATAEHGDP------AGDDVLQMLQSHPMFEQLIQAVRSDPNLL 226
>gi|347964389|ref|XP_311268.5| AGAP000733-PA [Anopheles gambiae str. PEST]
gi|333467508|gb|EAA06820.6| AGAP000733-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 137/313 (43%), Gaps = 50/313 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPE-DTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
MKI +KTLK +F VEV E DTV +K K+ G YP +Q LIY GK+++DD L
Sbjct: 1 MKITLKTLKQQTFFVEVDVEQDTVRTLKEKLHAESGL-AYPVDRQRLIYLGKIMEDDHLL 59
Query: 61 EENKVAENSFVVIMLTK--------NKRPTGEG--STRSTAPTKAPQSSAPTPAATPATA 110
+ K+ + F+V+M K ++ +G+G + + TA + + P AT A+
Sbjct: 60 SQYKLDDKKFIVVMSKKPPADEPAPEQKESGDGKPADKDTAAGRVEGTGEP---ATSASK 116
Query: 111 PQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNN------------ 158
P T ++ + TP+PA A+ + +T+ AAS +N
Sbjct: 117 PSTGSAVTATASSTATPSPAPAAAAGAPSTASDQKTAAAASPAADSSNPTNPSTDAVPEE 176
Query: 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQ 218
+ IQ++ +MG + + AL N P+RAVEYL S + +++ A Q
Sbjct: 177 MRINIQRLTEMG---YPEQSARLALEICANIPDRAVEYLLSEMGGGSDMSFALTAAAQLQ 233
Query: 219 AANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLR 278
Q + +ANP L FLR++P F+ +R
Sbjct: 234 QQQQQQQGQGAGIGGAAAAQSGDANP--------------------LAFLRDNPVFEDMR 273
Query: 279 AMVQANPQLFPCF 291
+++ +P + P
Sbjct: 274 RILRDDPSMLPYL 286
>gi|317107865|dbj|BAJ53744.1| nucleotide excision repair protein [Marsupenaeus japonicus]
Length = 382
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + +K L+ +F VE++ TV +K K+E +G D YPA Q LIY GK+ +DDTTL
Sbjct: 1 MVVLTLKNLQQQTFTVEIELSATVKALKEKVEKEKGGD-YPAVGQKLIYAGKIPQDDTTL 59
Query: 61 EENKVAENSFVVIMLTK 77
E + + F+VIM+TK
Sbjct: 60 ESYNIDDKKFLVIMVTK 76
>gi|224003975|ref|XP_002291659.1| Rad23 like protein [Thalassiosira pseudonana CCMP1335]
gi|220973435|gb|EED91766.1| Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + VKTLKG F VEV+ E TV +VK+ I+T + PA+ LI+ GKVLKD+ +E
Sbjct: 1 MNLTVKTLKGGKFTVEVEAEKTVAEVKVAIQTNKD---LPASSMKLIHSGKVLKDEDKIE 57
Query: 62 ENKVAENSFVVIMLTK 77
+ N F+V+M+ K
Sbjct: 58 SCNIKPNDFLVVMIAK 73
>gi|403300123|ref|XP_003940807.1| PREDICTED: uncharacterized protein LOC101032377 [Saimiri
boliviensis boliviensis]
Length = 458
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|167375270|ref|XP_001739824.1| UV excision repair protein rad23 [Entamoeba dispar SAW760]
gi|165896371|gb|EDR23800.1| UV excision repair protein rad23, putative [Entamoeba dispar
SAW760]
Length = 315
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 92/202 (45%), Gaps = 34/202 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDT-VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT-T 59
MKI VKT++G + E++PE T V ++K I QG D+ + LIY+ ++LKD+ T
Sbjct: 1 MKIIVKTIQGVLNEYEIEPETTTVGELKGMINAKQGIDIQNIS---LIYKSRMLKDNAQT 57
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
L + E +V+++ K S+ P P P T P+ T
Sbjct: 58 LGGLGINEGDSIVMVVKK--------------------SAVPAPKPAPVTQPENH---PT 94
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
EP P T P + + S T ++ V E I +++MG + RD
Sbjct: 95 EPVPQVTTQPITTNQPS---TQPVDIFQPQQRQQVNVEPTEENINHLVEMG---FLRDDA 148
Query: 180 VRALRAAYNNPERAVEYLYSGI 201
++ALR + NN A ++L SG+
Sbjct: 149 IKALRKSQNNTAIAADFLISGV 170
>gi|255712183|ref|XP_002552374.1| KLTH0C03410p [Lachancea thermotolerans]
gi|238933753|emb|CAR21936.1| KLTH0C03410p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
Query: 153 LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204
V G+ + +Q+I++MG +DR+ V RALRAA+NNP+RAVEYL GIPE
Sbjct: 135 FVTGSRRDETVQRIMEMG---YDREQVERALRAAFNNPDRAVEYLLMGIPEH 183
>gi|169597111|ref|XP_001791979.1| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
gi|160707447|gb|EAT90986.2| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
Length = 386
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK F +E +P +T+ ++K KI+ +G +V QQ LIY GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGELKAKIQADKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTK 77
+ E F+V M++K
Sbjct: 58 SYSIEEKGFIVCMVSK 73
>gi|345800149|ref|XP_003434657.1| PREDICTED: polyubiquitin-like [Canis lupus familiaris]
Length = 180
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 12/139 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA----TPATAPQTAVPI 117
+ + + S + ++L + R + R T P+ P+ + P+ PI
Sbjct: 58 DYNIQKKSTLHLIL--HLRGVTKSGIRPTGDNHGPRHRIPSLHQLLQDSQLIGPKVNCPI 115
Query: 118 STEPTPAPTPAPASASVSS 136
+E TPA +S S+
Sbjct: 116 HSELC---TPALHFSSFSA 131
>gi|291416572|ref|XP_002724522.1| PREDICTED: UV excision repair protein RAD23 homolog B-like,
partial [Oryctolagus cuniculus]
Length = 365
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ ++ +F +++ P TV +K KIE QG D +P A Q L+Y G+VL DD L
Sbjct: 1 MRLTLEAGPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 62 ENKVAENSFVVIMLTK 77
+ ++ E+ V +++ +
Sbjct: 61 DCQIHEHHAVTVLVAR 76
>gi|224052490|ref|XP_002198304.1| PREDICTED: AN1-type zinc finger protein 4 [Taeniopygia guttata]
Length = 715
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P +QQ LI+ LKDD L+
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPVSQQHLIWNNMELKDDYCLD 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKLVL 98
>gi|164423937|ref|XP_959055.2| hypothetical protein NCU07542 [Neurospora crassa OR74A]
gi|157070296|gb|EAA29819.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 383
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
I +M ++R + A+RAA+ NPERAVEYL +GIP + Q +R P AA
Sbjct: 155 IANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPAAAPAAA 214
Query: 226 MPQPTQPAPVTSSGPNANPLDLFPQ-----------GLPDVGSGAAGAGSLDFLRNSPQF 274
+ A N DL Q G G+ AAG G+LDFLRN+ QF
Sbjct: 215 AQAASPAAAGGDDDDQVNLFDLAAQLGNSAGGRGARGAEGAGAEAAGLGNLDFLRNNAQF 274
Query: 275 QVLRAMVQANPQLF-PCFKSWG 295
Q +R +VQ PQ+ P + G
Sbjct: 275 QQMRQLVQEQPQMLEPILQQLG 296
>gi|380094252|emb|CCC08469.1| putative RAD23 protein [Sordaria macrospora k-hell]
Length = 423
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 21/109 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E++P +T+ VK KI +G + Q LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETIAKVKAKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATA 110
K+ E FVV ++ K P+++AP PA + ++A
Sbjct: 58 SYKIEEKGFVVCVVNK------------------PKTTAPKPAESSSSA 88
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 70/155 (45%), Gaps = 26/155 (16%)
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA---------RAPGN 216
I +M ++R + A+RAAYNNPERAVEYL +GIP + Q + AP
Sbjct: 183 IANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIPANLQQQAASSRQPSAAPAAAPAA 242
Query: 217 GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA-------------- 262
AA + G + P++LF +G+ A G
Sbjct: 243 APAAAPAAAPAAQAASPAAAAGGDDEGPVNLFDLA-AQLGNSAGGRGARGAEGAGAEAAG 301
Query: 263 -GSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWG 295
G+LDFLRN+ QFQ +R +VQ PQ+ P + G
Sbjct: 302 LGNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLG 336
>gi|71033501|ref|XP_766392.1| DNA repair protein Rad23 [Theileria parva strain Muguga]
gi|68353349|gb|EAN34109.1| DNA repair protein rad23, putative [Theileria parva]
Length = 326
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 45/209 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQ---MLIYQGKVLKDDT 58
M + VKTLK DV+V +V D+ K+ ++ +P Q LI+ GK+LK +
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQAESLKLIHAGKILKKEL 55
Query: 59 TLEENKVAENSFVVIMLT-------KNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP 111
L++ ++ VI+++ K++ P + S+ +T +KAPQ P+P P
Sbjct: 56 LLKDYSDIKDGDKVIVISSKTPDPSKHQDPNSQPSSTTTPTSKAPQ---PSPLDNSPHQP 112
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+ +S + Y +S LV G+ LE +I +I +MG
Sbjct: 113 SSGHNVSQQ------------------------TYETVSSKLVMGSELEQSINRICEMG- 147
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSG 200
++R V RA+ AA+NNP+RAVE+L +G
Sbjct: 148 --FERPLVERAMAAAFNNPDRAVEFLSTG 174
>gi|397633408|gb|EJK70964.1| hypothetical protein THAOC_07640 [Thalassiosira oceanica]
Length = 829
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M +IFVKTL G + + VKP +TV VKMKI+ G PA QQ LIY G L++ TL
Sbjct: 489 MTRIFVKTLDGNTISLHVKPSETVDSVKMKIQYEIG---MPANQQRLIYLGTQLENGRTL 545
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+ + E+S + I+L P+ AP +S + QT P+S +
Sbjct: 546 SDYNIQEDSTLHIVLRLRSGPSSPSGDDYAAPPCQSSASRVKGGRARQSRQQTLPPVSIQ 605
Query: 121 PTPAPTPAP 129
AP
Sbjct: 606 SLAMNDAAP 614
>gi|291407419|ref|XP_002719906.1| PREDICTED: RAD23B protein-like [Oryctolagus cuniculus]
Length = 527
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVV 72
+F +++ P TV +K KIE QG D +P A Q L+Y G+VL DD L + ++ E+ V
Sbjct: 132 TFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVT 191
Query: 73 IMLTK 77
+++ +
Sbjct: 192 VLVAR 196
>gi|449279914|gb|EMC87347.1| AN1-type zinc finger and ubiquitin domain-containing protein 1
[Columba livia]
Length = 699
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P +QQ LI+ LKDD L
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPVSQQHLIWNNTELKDDYCLN 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKLVL 98
>gi|255724082|ref|XP_002546970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134861|gb|EER34415.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 335
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE--QAEVQ 208
S G E IQ I++MG ++R V ALRAA+NNP RAVEYL +GIPE Q Q
Sbjct: 81 STFAVGTEREATIQNIMEMG---YERSQVEAALRAAFNNPHRAVEYLLTGIPESLQRPEQ 137
Query: 209 PVA 211
PVA
Sbjct: 138 PVA 140
>gi|123495684|ref|XP_001326794.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121909714|gb|EAY14571.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 330
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 24/206 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ ++T+ G ++ V+P T+ ++K+ + ++V P + LIY K L D T+
Sbjct: 1 MEVSLRTISGVTYKQAVEPTTTI--AELKVLVSEKANVAPEGIK-LIYSAKFLDDSKTIA 57
Query: 62 ENKVAENSFVVIML--TKN-KRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
E+ + +++ + +KN K+P + S + +P K +P + A P
Sbjct: 58 ESNIQPGQAIIMHVQSSKNAKQPQKKSSEKRKSPKKE----------SPIKVQEAAAPAP 107
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T+P T P S V+ E A LV N +Q + +MG D
Sbjct: 108 TQPKEEATQKPEQPGHSMVAPLPEL----EAKHQLVDPPNFNALVQTLTEMGFSEGD--- 160
Query: 179 VVRALRAAYNNPERAVEYLYSG-IPE 203
ALRAA NP+RA E+L + IPE
Sbjct: 161 AAHALRAAVYNPDRAAEFLLTNYIPE 186
>gi|284044814|ref|YP_003395154.1| ubiquitin [Conexibacter woesei DSM 14684]
gi|283949035|gb|ADB51779.1| ubiquitin [Conexibacter woesei DSM 14684]
Length = 360
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ VK KI+ +G P +Q LIY G+VL+D TL
Sbjct: 26 MQIFVKTLTGKTITLEVEPSDSIEQVKQKIQDKEG---IPPDRQRLIYAGRVLEDGRTLA 82
Query: 62 ENKVAENSFVVIML 75
+ + S + + L
Sbjct: 83 DYNIQRESTLHLFL 96
>gi|363735451|ref|XP_003641561.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc finger and
ubiquitin domain-containing protein 1 [Gallus gallus]
Length = 735
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P +QQ LI+ LKDD L
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPISQQHLIWNNVELKDDYCLN 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKLVL 98
>gi|125775113|ref|XP_001358808.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
gi|54638549|gb|EAL27951.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
Length = 313
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++TL +E+ V +K ++ ++ G + Q LIY G++++D+ L
Sbjct: 1 MKLSIRTLDQRVITLEMDEGQNVLALKKRLVSMPGISQSVDSLQ-LIYGGRIMEDELPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+AE+ F+V+M G + TK P A+ AT T
Sbjct: 60 EYKIAEDKFLVLM----------GKQKVQQVTKVELEKKPKETASAATG--------TGS 101
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP+ S + + TS VA N E +Q+++ MG ++ V
Sbjct: 102 TPSGDTGAESYATGGGNPTSS-----------VAPN--EEMVQRLMGMG---YEEMPVRA 145
Query: 182 ALRAAYNNPERAVEYLYSGIPEQA 205
AL A++N+PE A+EYL + IP +A
Sbjct: 146 ALSASFNHPELAIEYLIAQIPSEA 169
>gi|340504527|gb|EGR30961.1| uv excision repair protein rad23, putative [Ichthyophthirius
multifiliis]
Length = 423
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 36/201 (17%)
Query: 2 MKIFVKTLKGTS-FDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD-TT 59
MK+ +KTLKG F++ + E T+ +K I +G + L+++GK L DD
Sbjct: 1 MKLTIKTLKGNDFFEINFQNETTISQIKDTICQKKGEQCKENIK--LVHKGKQLNDDQKN 58
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
+E + EN F+++M+ K+ G+ + A + Q + P P+ +
Sbjct: 59 CQELGIKENDFLIMMVFTKKQ--GQIPKQQPAEIQNEQQTQINP------------PVQS 104
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ P +S +T S E ++ I MG +++ +
Sbjct: 105 DSAQNHLQKPP-CQISQQQSTENSE--------------FEQKVKDIEAMG---FEKSKI 146
Query: 180 VRALRAAYNNPERAVEYLYSG 200
++AL+AA+NN ERA+EYL +G
Sbjct: 147 IQALQAAFNNQERAIEYLLNG 167
>gi|156086838|ref|XP_001610826.1| DNA repair protein Rad23, putatitve [Babesia bovis T2Bo]
gi|154798079|gb|EDO07258.1| DNA repair protein Rad23, putatitve [Babesia bovis]
Length = 313
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 125/288 (43%), Gaps = 76/288 (26%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KTL +V+VK +V ++ +ET S P+ +Q LI+ GKVLK + L
Sbjct: 1 MKLKIKTLNNLEAEVDVKDGSSVEELMKIVETHLPS--MPSDRQKLIHSGKVLKRELLLS 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ ++ VI++ + + T ST ST KAP + T A PQ PI+
Sbjct: 59 DYADIKDGDKVIVIAQKQSET--TSTVSTQSQKAPVADDRTKA---VDVPQ---PINL-- 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A S LV G+ LE I +I +MG + R V
Sbjct: 109 ---------------------------AESTLVTGSELEMNIARICEMG---FPRAEVEA 138
Query: 182 ALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
A+ AA+NNP+RAVE+L +G IP+ T M + A V G
Sbjct: 139 AMAAAFNNPDRAVEFLTTGTIPD--------------------TSMISNSSDAGVYDGG- 177
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
A+ L P + +L +++ P FQ LR ++Q++PQ+
Sbjct: 178 -ADMLRNIPM-----------SDNLASIQSHPAFQQLRQVIQSDPQVL 213
>gi|440493001|gb|ELQ75520.1| putative Ubiquitin, Ubiquitin subgroup protein
[Trachipleistophora hominis]
Length = 78
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ DVK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTICDVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ V + S + ++L
Sbjct: 58 DYNVQKESTLHLVL 71
>gi|301754679|ref|XP_002913151.1| PREDICTED: ubiquitin-like [Ailuropoda melanoleuca]
Length = 80
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ Q + P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQDKEGIPPDQQRLIFAGKQLEDGRTLS 60
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|281343818|gb|EFB19402.1| hypothetical protein PANDA_000950 [Ailuropoda melanoleuca]
Length = 79
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ Q + P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQDKEGIPPDQQRLIFAGKQLEDGRTLS 60
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|357613261|gb|EHJ68407.1| hypothetical protein KGM_07711 [Danaus plexippus]
Length = 490
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ V+TL GT+F++ V P DT+F +K KI V+G P +QQ L+Y + L D +L
Sbjct: 1 MEVLVETLTGTAFEMTVSPSDTIFAIKSKIYRVEG---IPVSQQHLLYNLRELDDGLSLS 57
Query: 62 ENKVAENSFVVIML 75
E+ + + + + ++L
Sbjct: 58 EHAIGDGARLRLVL 71
>gi|340375318|ref|XP_003386183.1| PREDICTED: polyubiquitin-like [Amphimedon queenslandica]
Length = 968
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK+L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKILEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GKVL DD TL
Sbjct: 628 MQIFVKTLTGRTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKVLVDDRTLS 684
Query: 62 ENKV 65
+ +
Sbjct: 685 DYNI 688
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ ++K KI+ +G P QQ LI+ G+ L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTMENIKAKIQDKEG---IPPDQQRLIFAGRQLEDGRTLS 133
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPT 93
+ + + S + ++L + K TG+ T P+
Sbjct: 134 DYNIQKESTLHLVLRRRGGMQIFVKTLTGKTITLEVEPS 172
Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD---T 58
M I+VKTL G +F++ V +T+ +VK KIE G P QQ +IY G+ L+DD
Sbjct: 541 MTIYVKTLTGKTFELNVIYCNTIGNVKTKIEETGG---IPCNQQKIIYDGRQLEDDYIED 597
Query: 59 TLEENKV 65
TL NK+
Sbjct: 598 TLLPNKI 604
Score = 45.4 bits (106), Expect = 0.031, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +K L G S +EV+ DTV VK KI+ +G P QQ LI+ GK L++ TL
Sbjct: 1 MRISIKPLVGESLSLEVEASDTVESVKEKIQDKEG---IPPDQQRLIFVGKQLENGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + S + ++L
Sbjct: 58 DYNIQNESTLHLVL 71
Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I+++++ G +EV P DT+ D+K IE + + P Q L Y G++L D +TL
Sbjct: 465 IYIRSVTGNIIVIEVLPTDTISDLKRMIEDKE--RISP-TDQTLFYAGQLLDDASTLASY 521
Query: 64 KVAENSFVVIMLTKNKRP 81
+ S + + + N P
Sbjct: 522 DIPMESVLDLFIRSNPNP 539
>gi|68466693|ref|XP_722542.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
gi|68466980|ref|XP_722405.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444377|gb|EAL03652.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444523|gb|EAL03797.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
Length = 348
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 7/66 (10%)
Query: 149 AASN---LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQA 205
AASN G+ E +IQ I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 206 EVQPVA 211
+ PVA
Sbjct: 132 Q-HPVA 136
>gi|238881986|gb|EEQ45624.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 348
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 7/66 (10%)
Query: 149 AASN---LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQA 205
AASN G+ E +IQ I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 206 EVQPVA 211
+ PVA
Sbjct: 132 Q-HPVA 136
>gi|302680567|ref|XP_003029965.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune
H4-8]
gi|300103656|gb|EFI95062.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune
H4-8]
Length = 383
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKT + F ++V+ +TV +K KI G +P A Q +IY GK+L DD T+E
Sbjct: 1 MKITVKTTQQKVFQIDVEGPETVGVLKQKISDAHG---HPVASQKIIYSGKILPDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNK 79
+ E F+V+M++K K
Sbjct: 58 SCGIKEKDFLVLMVSKPK 75
>gi|403264482|ref|XP_003924511.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 1
[Saimiri boliviensis boliviensis]
gi|403264484|ref|XP_003924512.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 128
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKKG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+N + + S + ++L
Sbjct: 58 DNNIQKESTLHLVL 71
>gi|326923591|ref|XP_003208018.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc finger and
ubiquitin domain-containing protein 1-like [Meleagris
gallopavo]
Length = 735
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P +QQ LI+ LKDD L
Sbjct: 28 MELFIETLTGTCFELCVSPFETVISVKAKIQRLEG---IPISQQHLIWNNVELKDDYCLN 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKLVL 98
>gi|395501173|ref|XP_003754972.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc finger protein 4
[Sarcophilus harrisii]
Length = 760
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P QQ LI+ L+DD L
Sbjct: 54 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPICQQHLIWNNMELEDDYCLN 110
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 111 DYNISEGCTLKLVL 124
>gi|333466063|gb|AEF33800.1| Ubi-gD2tr [synthetic construct]
Length = 383
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|334313731|ref|XP_003339943.1| PREDICTED: AN1-type zinc finger and ubiquitin domain-containing
protein 1 [Monodelphis domestica]
Length = 741
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P QQ LI+ L+DD L
Sbjct: 54 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPICQQHLIWNNMELEDDYCLN 110
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 111 DYNISEGCTLKLVL 124
>gi|197129054|gb|ACH45552.1| putative ubiquitin C variant 1 [Taeniopygia guttata]
Length = 77
Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MHIFVKTLTGKTLSLEVEPTDTIENVKAKIQAKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESILHLVL 71
>gi|76155444|gb|AAX26732.2| SJCHGC08803 protein [Schistosoma japonicum]
Length = 193
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+M IF++TL G+SF V V P +TV VK +I+ G P QQ LI+Q L D L
Sbjct: 2 LMGIFIETLTGSSFKVRVSPTETVVSVKFEIQRAGG---IPITQQHLIWQNNELDDHCCL 58
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
++ ++E S + ++L S R P AP++ P TP P+T +P
Sbjct: 59 KDYSISEGSTLRLVL----------SLRG-GPLNAPRT--PPLRLTPIHLPKTTLP 101
>gi|358056787|dbj|GAA97450.1| hypothetical protein E5Q_04129 [Mixia osmundae IAM 14324]
Length = 434
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 153 LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP--- 209
+ G LE +I +++ MG + R+ RA+RA+YNNP RAVEYL +GIP +A+ P
Sbjct: 186 FLTGARLEASIAEMVSMG---FPREDCQRAMRASYNNPHRAVEYLMNGIPAEAQTAPPRA 242
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA------- 262
V A A + T PA + P++LF + A A
Sbjct: 243 VPAATTGATPAAATTTTETAATPAAPVPAPTTGQPMNLFDAARQAAQNPAPAAATGGAAR 302
Query: 263 -----GSLDFLRNSPQFQVLRAMVQANPQLFPCF 291
LD LR P F+ LR +VQ NP L F
Sbjct: 303 PGATEAGLDALRREPAFEQLRTLVQQNPALLQPF 336
>gi|402294541|gb|AFQ55252.1| URT reporter protein [URT reporter vector pKP55-M]
Length = 1401
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ G+ L+D TL
Sbjct: 246 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGRQLEDGRTLS 302
Query: 62 ENKVAENSFVVIMLTKNKRPTGEG------STRSTAPTKAPQSSAPTPAATPATAPQTAV 115
+ + + S + ++L G G S T AP + +P A + Q A
Sbjct: 303 DYNIQKESTLHLVLRLRGGMHGSGAWLLPVSLVKRKTTLAPNTQTASPRALADSLMQLAR 362
Query: 116 PISTEPTPAPTPAPASASVSSVSATSE 142
+S A P AS S + T
Sbjct: 363 QVSRLNRLAAHPPFASWRNSEEARTDR 389
>gi|340505565|gb|EGR31882.1| uv excision repair protein, putative [Ichthyophthirius multifiliis]
Length = 395
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200
AS++V G LE I I MG ++R V++AL+AAYNNPERAVEYL SG
Sbjct: 122 ASDMVMGAELEAKIADIESMG---FERSKVIQALKAAYNNPERAVEYLLSG 169
>gi|208435490|pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy
gi|306440386|pdb|2KX0|A Chain A, The Solution Structure Of Ubb+1, Frameshift Mutant Of
Ubiquitin B
Length = 103
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 62 ENKVAENSFVVIML 75
E + + S + ++L
Sbjct: 66 EYNIQKESTLHLVL 79
>gi|442762197|gb|JAA73257.1| Putative ubiquitin/40s ribosomal protein s27a fusion, partial
[Ixodes ricinus]
Length = 129
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 53 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 109
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 110 DYNIQKESTLHLVL 123
>gi|344283081|ref|XP_003413301.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Loxodonta
africana]
Length = 179
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 52 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 108
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 109 DYNIQKESTLHLVL 122
>gi|406700023|gb|EKD03210.1| hypothetical protein A1Q2_02493 [Trichosporon asahii var. asahii
CBS 8904]
Length = 339
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%), Gaps = 4/51 (7%)
Query: 154 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG-IPE 203
V G L+ AI +++MG ++RD VV+ALRA+YNNP+RAVEYL SG IPE
Sbjct: 89 VTGAALQNAIDGMVEMG---FERDQVVKALRASYNNPDRAVEYLMSGNIPE 136
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---------- 51
MKI KT+ F ++ +T+ +K KI+ Q +PA Q LIY G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 52 --KVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 83
K+LKDD T+ + K+ E F+V+M++K TG
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSKLTTVTG 91
>gi|336268454|ref|XP_003348992.1| RAD23 protein [Sordaria macrospora k-hell]
Length = 249
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 70/155 (45%), Gaps = 26/155 (16%)
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA---------RAPGN 216
I +M ++R + A+RAAYNNPERAVEYL +GIP + Q + AP
Sbjct: 9 IANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIPANLQQQAASSRQPSAAPAAAPAA 68
Query: 217 GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA-------------- 262
AA + G + P++LF +G+ A G
Sbjct: 69 APAAAPAAAPAAQAASPAAAAGGDDEGPVNLFDLA-AQLGNSAGGRGARGAEGAGAEAAG 127
Query: 263 -GSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWG 295
G+LDFLRN+ QFQ +R +VQ PQ+ P + G
Sbjct: 128 LGNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLG 162
>gi|282601359|ref|ZP_05981478.2| ubiquitin family protein [Subdoligranulum variabile DSM 15176]
gi|282569316|gb|EFB74851.1| ubiquitin family [Subdoligranulum variabile DSM 15176]
Length = 721
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++FVK L G +EV+P D + DVK KI+ +G P +Q LI+ GK+L+D TL+
Sbjct: 76 MQVFVKRLAGKHITLEVEPTDRIEDVKQKIQDKEG---IPPERQRLIFAGKILEDGNTLQ 132
Query: 62 ENKVAENSFVVIM 74
+ + ++S + ++
Sbjct: 133 DYSIRKDSTIYLV 145
>gi|163915892|gb|AAI57792.1| LOC100135402 protein [Xenopus (Silurana) tropicalis]
Length = 85
Score = 58.2 bits (139), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 66 DYNIQKESTLHLVL 79
>gi|401883698|gb|EJT47893.1| hypothetical protein A1Q1_03199 [Trichosporon asahii var. asahii
CBS 2479]
Length = 348
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%), Gaps = 4/51 (7%)
Query: 154 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG-IPE 203
V G L+ AI +++MG ++RD VV+ALRA+YNNP+RAVEYL SG IPE
Sbjct: 98 VTGAALQNAIDGMVEMG---FERDQVVKALRASYNNPDRAVEYLMSGNIPE 145
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---------- 51
MKI KT+ F ++ +T+ +K KI+ Q +PA Q LIY G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 52 --KVLKDDTTLEENKVAENSFVVIMLTK 77
K+LKDD T+ + K+ E F+V+M++K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSK 85
>gi|402863905|ref|XP_003896232.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Papio anubis]
Length = 177
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 51 MQIFVKTLAGKTITLEVEPSDTTENVKAKIQAKEG---IPLDQQRLIFAGKQLEDGRTLS 107
Query: 62 ENKVAENSFVVIML 75
+ + + S + + L
Sbjct: 108 DCNIQKESILHLGL 121
>gi|296205125|ref|XP_002749733.1| PREDICTED: polyubiquitin-C-like [Callithrix jacchus]
Length = 177
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 101 MQIFVKTLTGKTITFEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 157
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 158 DYNIQKESTLHLVL 171
>gi|5523975|gb|AAD44040.1|AF104023_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 309
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 177 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 233
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 234 DYNIQKESTLHLVL 247
>gi|5523977|gb|AAD44041.1|AF104024_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 365
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 233 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 289
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 290 DYNIQKESTLHLVL 303
>gi|327281434|ref|XP_003225453.1| PREDICTED: AN1-type zinc finger and ubiquitin domain-containing
protein 1-like [Anolis carolinensis]
Length = 711
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+M+I ++TL GT F++ V P +TV VK KI+ ++G P +QQ LI+ + L+DD L
Sbjct: 27 IMEIIIETLTGTCFELRVSPFETVISVKSKIQRLEG---IPVSQQHLIWNDEELEDDYGL 83
Query: 61 EENKVAENSFVVIML 75
+ +++E + ++L
Sbjct: 84 NDYEISEGCTLKLIL 98
>gi|403287887|ref|XP_003935154.1| PREDICTED: polyubiquitin-B-like isoform 2 [Saimiri boliviensis
boliviensis]
Length = 83
Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPHDQQRLIFAGKQLEDGRTLP 63
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 64 DYNIQKESTLYLVL 77
>gi|149248070|ref|XP_001528422.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448376|gb|EDK42764.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 359
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S G+ E I I++MG +DR V ALRAA+NNP RAVEYL +GIPE + +P
Sbjct: 61 STFALGSEREATILNIMEMG---YDRPQVEAALRAAFNNPHRAVEYLITGIPESLQHRP 116
>gi|123454697|ref|XP_001315100.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479152|ref|XP_001322735.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479160|ref|XP_001322739.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897766|gb|EAY02877.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905587|gb|EAY10512.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905591|gb|EAY10516.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|567767|gb|AAA53067.1| p125 protein, partial [Bovine viral diarrhea virus 1]
Length = 1054
Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 347 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 403
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 404 DYNIQKESTLHLVL 417
Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 423 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 479
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 480 DYNIQKESTLHLVL 493
>gi|92790174|emb|CAI83756.1| Polyubiqutin 3 [Polyplastron multivesiculatum]
Length = 84
Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 8 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 64
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 65 DYNIQKESTLHLVL 78
>gi|217070100|gb|ACJ83410.1| unknown [Medicago truncatula]
gi|388522857|gb|AFK49490.1| unknown [Medicago truncatula]
Length = 142
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 247 LFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
+FPQ + AGAGSLDFLRN+PQFQ LR MVQ+NPQ+ P + G +
Sbjct: 1 MFPQ--ETISGAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQ 50
>gi|5523967|gb|AAD44036.1|AF104019_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 344
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 212 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 268
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 269 DYNIQKESTLHLVL 282
>gi|22549552|ref|NP_689325.1| ubi gene product [Mamestra configurata NPV-B]
gi|215401377|ref|YP_002332681.1| ubiquitin [Helicoverpa armigera multiple nucleopolyhedrovirus]
gi|22476731|gb|AAM95137.1| putative ubiquitin [Mamestra configurata NPV-B]
gi|198448877|gb|ACH88667.1| ubiquitin [Helicoverpa armigera multiple nucleopolyhedrovirus]
gi|390165345|gb|AFL64992.1| ubiquitin [Mamestra brassicae MNPV]
gi|401665753|gb|AFP95865.1| putative ubiquitin [Mamestra brassicae MNPV]
Length = 100
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VEV+P DTV +K KI +G P QQ LIY GK L+D +T+
Sbjct: 1 MQIFVKTLTGKTVTVEVEPTDTVEQLKQKITDKEG---IPPDQQRLIYAGKQLEDSSTMS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|109067209|ref|XP_001096612.1| PREDICTED: hypothetical protein LOC708161 [Macaca mulatta]
Length = 204
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 78 MQIFVKTLTGKTITLEVEPSDTTENVKAKIQAKEG---IPLDQQRLIFAGKQLEDGRTLS 134
Query: 62 ENKVAENSFVVIML 75
+ + + S + + L
Sbjct: 135 DCNIQKESILHLGL 148
>gi|11528469|gb|AAG37291.1| humanized L1/ubiqutin hybrid protein [synthetic construct]
Length = 575
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5523987|gb|AAD44046.1|AF104029_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 395
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 263 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 319
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 320 DYNIQKESTLHLVL 333
>gi|123398957|ref|XP_001301380.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123497770|ref|XP_001327247.1| polyubiquitin [Trichomonas vaginalis G3]
gi|154420157|ref|XP_001583094.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121882554|gb|EAX88450.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910174|gb|EAY15024.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121917333|gb|EAY22108.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 132
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|342326368|gb|AEL23099.1| ubiquitin [Cherax quadricarinatus]
Length = 99
Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 79
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 80 DYNIQKESTLHLVL 93
>gi|261289543|ref|XP_002604748.1| hypothetical protein BRAFLDRAFT_122556 [Branchiostoma floridae]
gi|229290076|gb|EEN60758.1| hypothetical protein BRAFLDRAFT_122556 [Branchiostoma floridae]
Length = 363
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M +F++TL GT+F++ V P +TV VK KI+ ++G P +QQ LI++ L+DD L
Sbjct: 1 MDLFIETLTGTAFELRVSPFETVISVKAKIQRLEG---IPISQQHLIWRSVELEDDYCLH 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYSITDGSTLKLVL 71
>gi|403287885|ref|XP_003935153.1| PREDICTED: polyubiquitin-B-like isoform 1 [Saimiri boliviensis
boliviensis]
gi|403287889|ref|XP_003935155.1| PREDICTED: polyubiquitin-B-like isoform 3 [Saimiri boliviensis
boliviensis]
Length = 77
Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPHDQQRLIFAGKQLEDGRTLP 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLYLVL 71
>gi|323355384|gb|EGA87208.1| Rad23p [Saccharomyces cerevisiae VL3]
Length = 335
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 153 LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
V G I++I++MG + R+ V RALRAA+NNP+RAVEYL GIPE
Sbjct: 79 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPE 126
>gi|159112981|ref|XP_001706718.1| Ubiquitin [Giardia lamblia ATCC 50803]
gi|157434817|gb|EDO79044.1| Ubiquitin [Giardia lamblia ATCC 50803]
Length = 82
Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ ++K KI+ +G P QQ LI+ GK L+D+ TL+
Sbjct: 6 MQIFVKTLTGKTVTLEVEPTDTINNIKAKIQDKEG---IPPDQQRLIFSGKQLEDNRTLQ 62
Query: 62 ENKVAENSFVVIML 75
+ + +++ + ++L
Sbjct: 63 DYSIQKDATLHLVL 76
>gi|449017230|dbj|BAM80632.1| ubiquitin with short C-terminal extension [Cyanidioschyzon
merolae strain 10D]
Length = 134
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|317055545|ref|YP_004104012.1| ubiquitin [Ruminococcus albus 7]
gi|315447814|gb|ADU21378.1| ubiquitin [Ruminococcus albus 7]
Length = 264
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI Q + +Q LI+ GK L+DD TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI---QDKESIAPNKQRLIFAGKQLEDDRTLA 57
Query: 62 ENKVAENSFVVIMLTKN 78
+ + + S + ++L N
Sbjct: 58 DYNIQKESTLHLVLRAN 74
>gi|76155958|gb|AAX27211.2| SJCHGC03112 protein [Schistosoma japonicum]
Length = 155
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 79/149 (53%), Gaps = 24/149 (16%)
Query: 54 LKDDTTLEENKVAENSFVVIM-LTKNKRPTGEGSTRSTAPTKAPQSSAPTPA-ATPATAP 111
++D +L++ KV ++ FVV+M ++K R + ++ S + P P+ +P
Sbjct: 1 MEDSKSLKDYKVTDSGFVVVMSVSKLPRDIAKEASTSVL-SNLTDEGKPMPSEKSPNVDV 59
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+V ++T TP+ A+ ++S S+LV G + E +Q+++ MG
Sbjct: 60 IESVNVAT------TPSTATNTLS------------FLKSSLVLGEDFESVVQELVSMG- 100
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSG 200
+++ V++A+RA +NNP+RA EYL SG
Sbjct: 101 --FEKPLVIQAMRAGFNNPDRAFEYLSSG 127
>gi|110671414|gb|ABG81958.1| putative ubiquitin/ribosomal protein S27Ae fusion protein
[Diaphorina citri]
Length = 156
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+DD TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5523979|gb|AAD44042.1|AF104025_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 432
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 224 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 280
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 281 DYNIQKESTLHLVL 294
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 300 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 356
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 357 DYNIQKESTLHLVL 370
>gi|395508039|ref|XP_003758323.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Sarcophilus
harrisii]
Length = 228
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 73 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 129
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 130 DYNIQKESTLHLVL 143
>gi|312077797|ref|XP_003141460.1| ubiquitin/ribosomal fusion protein [Loa loa]
Length = 702
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 526 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 582
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 583 DYNIQKESTLHLVL 596
>gi|40556034|ref|NP_955119.1| CNPV096 ubiquitin [Canarypox virus]
gi|40233859|gb|AAR83442.1| CNPV096 ubiquitin [Canarypox virus]
Length = 85
Score = 57.4 bits (137), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DTV +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTVENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|9629963|ref|NP_046181.1| ubiquitin-like protein [Orgyia pseudotsugata MNPV]
gi|464989|sp|Q05120.1|UBIL_NPVOP RecName: Full=Ubiquitin-like protein; Flags: Precursor
gi|7439566|pir||T10294 ubiquitin-like protein - Orgyia pseudotsugata nuclear
polyhedrosis virus
gi|222221|dbj|BAA02639.1| ubiquitin [Orgyia pseudotsugata single capsid
nuclopolyhedrovirus]
gi|1911271|gb|AAC59024.1| ubiquitin-like protein [Orgyia pseudotsugata MNPV]
Length = 93
Score = 57.4 bits (137), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VE +P DTV VK KI +G P QQ LIY GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEG---VPVDQQRLIYAGKQLEDAQTLA 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHMVL 71
>gi|426387866|ref|XP_004060383.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 11 [Gorilla
gorilla gorilla]
Length = 158
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 31 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 87
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 88 DYNIQKESTLHLVL 101
>gi|210076049|ref|XP_002143115.1| YALI0F18403p [Yarrowia lipolytica]
gi|199424967|emb|CAR65204.1| YALI0F18403p [Yarrowia lipolytica CLIB122]
Length = 77
Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +KTL G +++V+PED + +K KIE ++G P AQQ L++ GK L+D+ T+
Sbjct: 1 MKIKIKTLIGKEIEMDVEPEDQISVLKEKIEELEG---IPPAQQRLVFTGKQLQDEKTIA 57
Query: 62 ENKVAENSFVVIML 75
ENK+ + + ++L
Sbjct: 58 ENKIEAGASLHLVL 71
>gi|39725571|dbj|BAD04938.1| poryprotein [Bovine viral diarrhea virus T-20]
Length = 2420
Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1464 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1520
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1521 DYNIQKESTLHLVL 1534
>gi|196016140|ref|XP_002117924.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190579497|gb|EDV19591.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 99
Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 58
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 59 DYNIQKESTLHLVL 72
>gi|20070031|ref|NP_613235.1| v-ubiquitin [Mamestra configurata NPV-A]
gi|20043425|gb|AAM09260.1| v-ubiquitin [Mamestra configurata NPV-A]
gi|33331863|gb|AAQ11171.1| putative ubiquitin [Mamestra configurata NPV-A]
Length = 100
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VEV+P DTV +K KI +G P QQ LIY GK L+D +T+
Sbjct: 1 MQIFVKTLTGKTVTVEVEPTDTVEQLKQKITDKEG---IPPDQQRLIYAGKQLEDSSTMS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|72172080|gb|AAZ66786.1| polyubiquitin [Ictalurus punctatus]
Length = 85
Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 66 DYNIQKESTLHLVL 79
>gi|395513211|ref|XP_003760822.1| PREDICTED: ubiquitin-60S ribosomal protein L40 [Sarcophilus
harrisii]
Length = 182
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 55 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 111
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 112 DYNIQKESTLHLVL 125
>gi|113431898|emb|CAJ90900.1| ubiquitin/ribosomal fusion protein homologue [Salmo salar]
Length = 135
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 10 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 66
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 67 DYNIQKESTLHLVL 80
>gi|510476|emb|CAA52419.1| ubiquitin unit IV [Artemia franciscana]
Length = 76
Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ QG P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|356927786|gb|AET42576.1| polyubiquitin [Emiliania huxleyi virus 202]
Length = 80
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESNIHLVL 71
>gi|119624911|gb|EAX04506.1| ubiquitin B, isoform CRA_e [Homo sapiens]
Length = 152
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|197129052|gb|ACH45550.1| putative ubiquitin C variant 1 [Taeniopygia guttata]
Length = 245
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
++ + + S + ++L
Sbjct: 58 DDNIQKESTLHLVL 71
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKV 65
+ +
Sbjct: 210 DYNI 213
>gi|432904346|ref|XP_004077285.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Oryzias
latipes]
Length = 209
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 54 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 110
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 111 DYNIQKESTLHLVL 124
>gi|13021896|gb|AAK11574.1| humanized ubiquitin/L1 delta/H-2 Db CTL epitope hybrid protein
[synthetic construct]
Length = 558
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|92790180|emb|CAI83759.1| Polyubiqutin 6 [Polyplastron multivesiculatum]
Length = 81
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 61
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|441628709|ref|XP_003275965.2| PREDICTED: polyubiquitin-C-like [Nomascus leucogenys]
Length = 181
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 42 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 98
Query: 62 ENKVAENS--FVVIMLTKNKR 80
+ + + + +++ L KR
Sbjct: 99 DYNIQKETGFHMLVRLKGGKR 119
>gi|332854163|ref|XP_003316257.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Pan
troglodytes]
gi|397493861|ref|XP_003817814.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 7 [Pan
paniscus]
Length = 175
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 48 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 104
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 105 DYNIQKESTLHLVL 118
>gi|392332716|ref|XP_003752669.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|392352643|ref|XP_001053626.2| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
Length = 90
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKKSTLHLVL 71
>gi|426387854|ref|XP_004060377.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Gorilla
gorilla gorilla]
Length = 175
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 48 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 104
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 105 DYNIQKESTLHLVL 118
>gi|195337251|ref|XP_002035242.1| GM14032 [Drosophila sechellia]
gi|194128335|gb|EDW50378.1| GM14032 [Drosophila sechellia]
Length = 915
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTINLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 893
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G + P QQ LI+ GK L+D TL
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--ISP-DQQRLIFAGKQLEDGRTLS 817
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 818 DYNIQKESTLHLVL 831
>gi|355747111|gb|EHH51725.1| hypothetical protein EGM_11159 [Macaca fascicularis]
Length = 146
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EVKP DT DVK KI+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVKPSDTNEDVKAKIQDKEG---IPPDQQHLILAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + E S + ++L
Sbjct: 58 DYDIWEESTLHLVL 71
>gi|326437416|gb|EGD82986.1| neural cell expressed [Salpingoeca sp. ATCC 50818]
Length = 79
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL G +++V+P+DT+ VK K+E QG P QQ LIY GK L D TL+
Sbjct: 1 MQIKVKTLTGREIELDVEPDDTMLQVKEKLEEKQG---IPPEQQRLIYAGKPLNDSKTLK 57
Query: 62 ENKVAENSFVVIML 75
+ K+ + ++L
Sbjct: 58 DCKIESGCTIHLVL 71
>gi|109052650|ref|XP_001092853.1| PREDICTED: ubiquitin-like [Macaca mulatta]
gi|355560077|gb|EHH16805.1| hypothetical protein EGK_12156 [Macaca mulatta]
Length = 145
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EVKP DT DVK KI+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVKPSDTNEDVKAKIQDKEG---IPPDQQHLILAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + E S + ++L
Sbjct: 58 DYDIWEESTLHLVL 71
>gi|112983984|ref|NP_001036839.1| polyubiquitin [Bombyx mori]
gi|4587236|dbj|BAA76676.1| polyubiquitin [Bombyx mori]
Length = 913
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 817
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 837 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 893
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L++ TL
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLENGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
>gi|5523981|gb|AAD44043.1|AF104026_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 216
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 84 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 140
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 141 DYNIQKESTLHLVL 154
>gi|348558880|ref|XP_003465244.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cavia
porcellus]
Length = 191
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 64 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 120
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 121 DYNIQKESTLHLVL 134
>gi|325190270|emb|CCA24746.1| unnamed protein product putative [Albugo laibachii Nc14]
Length = 138
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESTDTIDNVKVKIQDKEG---IPPDQQRLIFAGKQLEDGRTLN 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV 115
+ + + S + ++L R G G + +A + TP T + A+
Sbjct: 58 DYNIQKESTLHLVL----RLRGGGKVHGSLA-RAGKVKGQTPNVTKQEGKKKAL 106
>gi|208568|gb|AAA72701.1| synthetic ubiquitin [synthetic construct]
Length = 76
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESCLHLVL 71
>gi|296211496|ref|XP_002752432.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
Length = 155
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLMGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENS 69
+N + + S
Sbjct: 58 DNNIQKES 65
>gi|214868|gb|AAA49979.1| ubiquitin-like fusion protein [Xenopus laevis]
Length = 701
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P AQQ LI+ L+D+ +L
Sbjct: 28 MELFIETLTGTCFELRVSPYETVTSVKSKIQRLEG---IPVAQQHLIWNNMELEDECSLS 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKMVL 98
>gi|197107121|pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin
gi|270346285|pdb|2KJH|B Chain B, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
gi|377656643|pdb|4DHJ|D Chain D, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656651|pdb|4DHJ|H Chain H, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656655|pdb|4DHZ|E Chain E, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 76
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|158771|gb|AAA29006.1| ubiquitin, partial [Drosophila melanogaster]
gi|225323|prf||1212243H ubiquitin S7(1)
Length = 76
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKXLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|158767|gb|AAA29004.1| ubiquitin, partial [Drosophila melanogaster]
gi|225321|prf||1212243F ubiquitin S6(1)
Length = 76
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGX---PPDQQRLIFAGKXLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|160877884|pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A
gi|160877885|pdb|2ZCB|B Chain B, Crystal Structure Of Ubiquitin P37aP38A
gi|160877886|pdb|2ZCB|C Chain C, Crystal Structure Of Ubiquitin P37aP38A
Length = 76
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G A QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IAADQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|148232894|ref|NP_001081336.1| ubiquitin-like fusion protein [Xenopus laevis]
gi|51703870|gb|AAH80990.1| LOC397781 protein [Xenopus laevis]
Length = 701
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P AQQ LI+ L+D+ +L
Sbjct: 28 MELFIETLTGTCFELRVSPYETVTSVKSKIQRLEG---IPVAQQHLIWNNMELEDECSLS 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKMVL 98
>gi|442570892|pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin
Variant
Length = 76
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ L++ K L+D TL
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQKLLFARKQLEDGRTLS 59
Query: 62 ENKVAENSFVVIML 75
+ + + SF+ ++L
Sbjct: 60 DYNIHKESFLYLVL 73
>gi|397522294|ref|XP_003831209.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 1
[Pan paniscus]
gi|397522296|ref|XP_003831210.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 2
[Pan paniscus]
gi|397522298|ref|XP_003831211.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 3
[Pan paniscus]
gi|119624908|gb|EAX04503.1| ubiquitin B, isoform CRA_b [Homo sapiens]
gi|197129066|gb|ACH45564.1| putative ubiquitin C variant 10 [Taeniopygia guttata]
gi|431914472|gb|ELK15722.1| Ubiquitin [Pteropus alecto]
gi|440894339|gb|ELR46815.1| Polyubiquitin-B [Bos grunniens mutus]
Length = 77
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|119619136|gb|EAW98730.1| hCG1790904, isoform CRA_b [Homo sapiens]
Length = 334
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
++IFVKTL+G + +EV+P D + +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 125
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP 103
+ + K PT R K + S PTP
Sbjct: 126 DCNI------------QKEPTLHLLLRLCGVAKKRKKSYPTP 155
>gi|9372|emb|CAA49657.1| ubiquitin [Giardia intestinalis]
Length = 76
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ ++K KI+ +G P QQ LI+ GK L+D+ TL+
Sbjct: 1 MQIFVKTLTGKTVTLEVEPTDTINNIKAKIQDKEG---IPPDQQRLIFSGKQLEDNRTLQ 57
Query: 62 ENKVAENSFVVIML 75
+ + +++ + ++L
Sbjct: 58 DYSIQKDATLHLVL 71
>gi|5523969|gb|AAD44037.1|AF104020_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 318
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 186 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 242
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 243 DYNIQKESTLHLVL 256
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P Q+ LI+ GK L+D TL
Sbjct: 110 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQRRLIFAGKQLEDGRTLS 166
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 167 DYNIQKESTLHLVL 180
>gi|53987035|gb|AAV27297.1| poly-histidine-tagged ubiquitin [Cloning vector pHUE]
Length = 130
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 77
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 78 DYNIQKESTLHLVL 91
>gi|147906437|ref|NP_001079636.1| AN1-type zinc finger protein 4-like [Xenopus laevis]
gi|28302328|gb|AAH46649.1| MGC52567 protein [Xenopus laevis]
Length = 693
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P AQQ LI+ L+D+ +L
Sbjct: 28 MELFIETLTGTCFELRVSPHETVASVKSKIQRLEG---IPVAQQHLIWNNMELEDECSLS 84
Query: 62 ENKVAENSFVVIML 75
++E + ++L
Sbjct: 85 GYNISEGCTLKMVL 98
>gi|148688761|gb|EDL20708.1| mCG1048340 [Mus musculus]
Length = 91
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|253746108|gb|EET01613.1| Ubiquitin [Giardia intestinalis ATCC 50581]
gi|308160019|gb|EFO62531.1| Ubiquitin [Giardia lamblia P15]
Length = 77
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ ++K KI+ +G P QQ LI+ GK L+D+ TL+
Sbjct: 1 MQIFVKTLTGKTVTLEVEPTDTINNIKAKIQDKEG---IPPDQQRLIFSGKQLEDNRTLQ 57
Query: 62 ENKVAENSFVVIML 75
+ + +++ + ++L
Sbjct: 58 DYSIQKDATLHLVL 71
>gi|449015586|dbj|BAM78988.1| 60S ribosomal protein L40, ubiquitin fusion protein
[Cyanidioschyzon merolae strain 10D]
Length = 128
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|167522036|ref|XP_001745356.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776314|gb|EDQ89934.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KT+K +FD+++ + T+ +VK IE +G D YP +IYQGKVL D TL
Sbjct: 1 MKVTIKTIKDGTFDLQMGDDATIGEVKAAIEQSKG-DKYPKDGLKVIYQGKVLGDSDTLA 59
Query: 62 ENKVAENSFVVIM 74
E F+V+M
Sbjct: 60 SANFQEKDFLVVM 72
>gi|327358639|gb|AEA51166.1| ubiquitin and ribosomal protein S27a precursor, partial [Oryzias
melastigma]
Length = 116
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 22 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 78
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 79 DYNIQKESTLHLVL 92
>gi|391348265|ref|XP_003748368.1| PREDICTED: LOW QUALITY PROTEIN: polyubiquitin-A-like [Metaseiulus
occidentalis]
Length = 913
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 817
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYSIQKESTLHLVL 679
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLL 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L++ TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEEGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 837 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGX---PPDQQRLIFAGKQLEDGRTLS 893
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+ DT+ +VK+K++ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGXTITLDVEASDTIENVKVKLQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 50.8 bits (120), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVELADTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|145499454|ref|XP_001435712.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402847|emb|CAK68315.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
+ + L++G + AI+Q++ MG + R+ V A++AA+NNP+RAVEYL +GIP
Sbjct: 124 SGTGLLSGPEYDKAIEQLMSMG---FQREECVNAMKAAFNNPDRAVEYLLNGIPPGVTSH 180
Query: 209 PVA-RAPGNGQ--AANSPTQMPQPTQ 231
P A A G GQ AA P P Q
Sbjct: 181 PPAPVASGQGQPPAAQQPVGQPNQIQ 206
>gi|296221018|ref|XP_002756700.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like, partial
[Callithrix jacchus]
Length = 138
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL+G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 12 MQIFVKTLRGKTITLEVEPSDTIENVKPKIQDKEG---IPPDQQHLIFAGKQLEDGRTLS 68
Query: 62 ENKVAENSFVVIMLT 76
+ + + S + ++L
Sbjct: 69 DYNIQKESTLHLVLC 83
>gi|195190296|ref|XP_002029499.1| GL14086 [Drosophila persimilis]
gi|194103217|gb|EDW25260.1| GL14086 [Drosophila persimilis]
Length = 79
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|346986300|ref|NP_001231307.1| polyubiquitin [Cricetulus griseus]
gi|2627133|dbj|BAA23488.1| polyubiquitin [Cricetulus griseus]
Length = 1038
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ V + S + ++L
Sbjct: 590 DYNVQKESTLHLVL 603
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 817
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 893
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 969
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 970 DYNIQKESTLHLVL 983
>gi|156083999|ref|XP_001609483.1| ubiquitin / ribosomal protein CEP52 [Babesia bovis T2Bo]
gi|154796734|gb|EDO05915.1| ubiquitin / ribosomal protein CEP52 [Babesia bovis]
Length = 131
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|371572867|gb|AEX37896.1| ubiquitin/TetR-Vp16 fusion protein [piggyBac transformation
vector OX3604]
Length = 414
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ G+ L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGRQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|387592579|gb|EIJ87603.1| ubiquitin [Nematocida parisii ERTm3]
gi|387595206|gb|EIJ92831.1| ubiquitin [Nematocida parisii ERTm1]
Length = 132
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|67614873|ref|XP_667394.1| ubiquitin / ribosomal protein CEP52 [Cryptosporidium hominis
TU502]
gi|54658521|gb|EAL37158.1| ubiquitin / ribosomal protein CEP52 [Cryptosporidium hominis]
gi|323510495|dbj|BAJ78141.1| cgd7_2280 [Cryptosporidium parvum]
Length = 128
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392340649|ref|XP_003754135.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|392348302|ref|XP_003750066.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|148673267|gb|EDL05214.1| mCG54232 [Mus musculus]
gi|148678405|gb|EDL10352.1| mCG23377, isoform CRA_b [Mus musculus]
gi|149035463|gb|EDL90144.1| rCG50143 [Rattus norvegicus]
Length = 77
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|342906196|gb|AEL79381.1| ubiquitin [Rhodnius prolixus]
Length = 81
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 61
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|66362872|ref|XP_628402.1| 60S ribosomal protein L40 [Cryptosporidium parvum Iowa II]
gi|46229800|gb|EAK90618.1| 60S ribosomal protein L40 [Cryptosporidium parvum Iowa II]
Length = 132
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 61
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|357529042|gb|AET80727.1| polyubiquitin [Pinctada fucata]
Length = 77
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|324532777|gb|ADY49258.1| Polyubiquitin, partial [Ascaris suum]
Length = 187
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D V VK KI+ +G P QQ LI+ GK L+DD TL
Sbjct: 77 MQIFVKTLTGKTLTLEVEPSDAVQHVKAKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPTKAPQ 97
+ + + S + ++L K TG+ T P+ A Q
Sbjct: 58 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTLTLEVEPSDAVQ 100
>gi|225715160|gb|ACO13426.1| Ubiquitin [Esox lucius]
Length = 92
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|302566232|pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin
gi|302566233|pdb|3NOB|B Chain B, Structure Of K11-Linked Di-Ubiquitin
gi|302566234|pdb|3NOB|C Chain C, Structure Of K11-Linked Di-Ubiquitin
gi|302566235|pdb|3NOB|D Chain D, Structure Of K11-Linked Di-Ubiquitin
gi|302566236|pdb|3NOB|E Chain E, Structure Of K11-Linked Di-Ubiquitin
gi|302566237|pdb|3NOB|F Chain F, Structure Of K11-Linked Di-Ubiquitin
gi|302566238|pdb|3NOB|G Chain G, Structure Of K11-Linked Di-Ubiquitin
gi|302566239|pdb|3NOB|H Chain H, Structure Of K11-Linked Di-Ubiquitin
Length = 78
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 59
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 60 DYNIQKESTLHLVL 73
>gi|208435644|pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
gi|208435648|pdb|3DVN|X Chain X, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
gi|208435652|pdb|3DVN|U Chain U, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 80
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 60
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|159145744|gb|ABW90409.1| putative ribosomal protein L40 [Barentsia elongata]
Length = 128
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|13172895|gb|AAK14239.1|AF321441_1 polyubiquitin GmUblast [Galleria mellonella]
Length = 77
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|1421797|gb|AAB03872.1| polyubiquitin, partial [Manduca sexta]
Length = 79
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|288812763|gb|ADC54275.1| putative ubiquitin [Hydroides elegans]
Length = 90
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|92790168|emb|CAI83753.1| Polyubiqutin 1 [Metadinium medium]
Length = 83
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 7 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 63
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 64 DYNIQKESTLHLVL 77
>gi|318946686|ref|NP_001187064.1| ribosomal protein L40 [Ictalurus punctatus]
gi|15293953|gb|AAK95169.1|AF401597_1 ribosomal protein L40 [Ictalurus punctatus]
Length = 128
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKVKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|289526477|pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
gi|306440517|pdb|3K9P|B Chain B, The Crystal Structure Of E2-25k And Ubiquitin Complex
gi|313754429|pdb|3OJ3|A Chain A, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754430|pdb|3OJ3|B Chain B, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754431|pdb|3OJ3|C Chain C, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754432|pdb|3OJ3|D Chain D, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754433|pdb|3OJ3|E Chain E, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754434|pdb|3OJ3|F Chain F, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754435|pdb|3OJ3|G Chain G, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754436|pdb|3OJ3|H Chain H, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754446|pdb|3OJ4|B Chain B, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
gi|313754449|pdb|3OJ4|E Chain E, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
gi|332639783|pdb|3PTF|C Chain C, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
gi|332639784|pdb|3PTF|D Chain D, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 79
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 60
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|154416733|ref|XP_001581388.1| ubiquitin [Trichomonas vaginalis G3]
gi|121915615|gb|EAY20402.1| ubiquitin, putative [Trichomonas vaginalis G3]
Length = 166
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 35 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 91
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 92 DYSIQKDSTLHLVL 105
>gi|403371844|gb|EJY85807.1| Ubiquitin [Oxytricha trifallax]
Length = 134
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGS 86
+ + + S + ++L R G+GS
Sbjct: 58 DYNIQKESTLHLVL--RLRGGGQGS 80
>gi|336377749|gb|EGO18909.1| hypothetical protein SERLADRAFT_402972 [Serpula lacrymans var.
lacrymans S7.9]
Length = 78
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G +P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---FPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|339232996|ref|XP_003381615.1| ubiquitin family protein [Trichinella spiralis]
gi|316979549|gb|EFV62331.1| ubiquitin family protein [Trichinella spiralis]
Length = 189
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 75 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 131
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQS 98
+ + + S + ++L G T TA ++ S
Sbjct: 132 DYNIQKESTLHLVLRLRGGMRNFGKTDQTAISEVESS 168
>gi|62089150|dbj|BAD93019.1| ubiquitin C variant [Homo sapiens]
Length = 1309
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 17 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 73
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 74 DYNIQKESTLHLVL 87
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 93 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 149
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 150 DYNIQKESTLHLVL 163
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 169 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 225
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 226 DYNIQKESTLHLVL 239
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 245 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 301
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 302 DYNIQKESTLHLVL 315
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 321 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 377
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 378 DYNIQKESTLHLVL 391
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 397 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 453
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 454 DYNIQKESTLHLVL 467
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 473 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 529
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 530 DYNIQKESTLHLVL 543
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 549 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 605
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 606 DYNIQKESTLHLVL 619
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 625 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 681
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 682 DYNIQKESTLHLVL 695
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 701 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 757
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 758 DYNIQKESTLHLVL 771
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 777 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 833
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 834 DYNIQKESTLHLVL 847
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 853 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 909
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 910 DYNIQKESTLHLVL 923
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 929 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 985
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 986 DYNIQKESTLHLVL 999
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1005 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1061
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1062 DYNIQKESTLHLVL 1075
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1081 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1137
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1138 DYNIQKESTLHLVL 1151
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1213
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1214 DYNIQKESTLHLVL 1227
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L++ TL
Sbjct: 1233 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLENGRTLS 1289
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1290 DYNIQKESTLHLVL 1303
>gi|452819514|gb|EME26571.1| ubiquitin [Galdieria sulphuraria]
Length = 184
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|69608591|emb|CAJ01881.1| ubiquitin/ribosomal protein S27Ae fusion protein [Timarcha
balearica]
Length = 156
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKVKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|197725013|pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
gi|197725016|pdb|2ZNV|F Chain F, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
gi|254574781|pdb|3A1Q|A Chain A, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
gi|254574784|pdb|3A1Q|D Chain D, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
gi|262118712|pdb|3JSV|B Chain B, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
gi|270346452|pdb|3A9J|B Chain B, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
gi|270346455|pdb|3A9K|B Chain B, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
gi|399217517|emb|CCF74404.1| unnamed protein product [Babesia microti strain RI]
Length = 77
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|295039418|emb|CBL53160.1| ubiquitin [Psammechinus miliaris]
Length = 128
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|84997964|ref|XP_953703.1| ubiquitin/60S ribosomal fusion protein [Theileria annulata]
gi|65304700|emb|CAI73025.1| ubiquitin/60S ribosomal fusion protein, putative [Theileria
annulata]
Length = 131
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|71033899|ref|XP_766591.1| ubiquitin/ribosomal fusion protein [Theileria parva strain
Muguga]
gi|68353548|gb|EAN34308.1| ubiquitin/ribosomal fusion protein, putative [Theileria parva]
gi|428673439|gb|EKX74352.1| ubiquitin/ribosomal fusion protein, putative [Babesia equi]
Length = 131
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|354683503|gb|AER34936.1| ubiquitin [Litopenaeus vannamei]
Length = 70
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P+ QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPSDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENS 69
+ + + S
Sbjct: 58 DYNIQKES 65
>gi|403221428|dbj|BAM39561.1| Ubc protein [Theileria orientalis strain Shintoku]
Length = 131
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|334323113|ref|XP_003340346.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Monodelphis
domestica]
Length = 77
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874848|gb|AFM86256.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874990|gb|AFM86327.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|405113128|gb|AFR90239.1| ubiquitin-L40e ribosomal fusion protein [Sterkiella nova]
Length = 134
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGS 86
+ + + S + ++L R G+GS
Sbjct: 58 DYNIQKESTLHLVL--RLRGGGQGS 80
>gi|229532|prf||751846A ubiquitin
gi|446405|prf||1911411A ubiquitin
gi|1092926|prf||2102234A ubiquitin
gi|1095375|prf||2108379A ubiquitin
Length = 74
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|169247557|gb|ACA51615.1| ubiquitin [Monochamus alternatus]
Length = 76
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLT 76
+ + + S + ++L+
Sbjct: 58 DYNIQKESTLHLVLS 72
>gi|56967061|pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex
gi|56967063|pdb|1XD3|D Chain D, Crystal Structure Of Uchl3-Ubvme Complex
gi|118138326|pdb|2IBI|B Chain B, Covalent Ubiquitin-Usp2 Complex
gi|145579739|pdb|2J7Q|B Chain B, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
gi|145579741|pdb|2J7Q|D Chain D, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
gi|168177298|pdb|3C0R|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
gi|168177300|pdb|3C0R|D Chain D, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
gi|169404784|pdb|3BY4|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
gi|254575051|pdb|3I3T|B Chain B, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
gi|254575052|pdb|3I3T|D Chain D, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
gi|254575053|pdb|3I3T|F Chain F, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
gi|254575054|pdb|3I3T|H Chain H, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
gi|282403707|pdb|3IHP|C Chain C, Covalent Ubiquitin-Usp5 Complex
gi|282403708|pdb|3IHP|D Chain D, Covalent Ubiquitin-Usp5 Complex
gi|298508352|pdb|3IFW|B Chain B, Crystal Structure Of The S18y Variant Of Ubiquitin
Carboxy T Hydrolase L1 Bound To Ubiquitin
Vinylmethylester.
gi|298508416|pdb|3KVF|B Chain B, Crystal Structure Of The I93m Mutant Of Ubiquitin
Carboxy Te Hydrolase L1 Bound To Ubiquitin
Vinylmethylester
gi|298508418|pdb|3KW5|B Chain B, Crystal Structure Of Ubiquitin Carboxy Terminal
Hydrolase L1 Ubiquitin Vinylmethylester
gi|319443769|pdb|3PT2|B Chain B, Structure Of A Viral Otu Domain Protease Bound To
Ubiquitin
gi|320089917|pdb|3PRM|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
gi|320089919|pdb|3PRM|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
gi|320089921|pdb|3PRP|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
gi|320089923|pdb|3PRP|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
gi|321159972|pdb|3PHW|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
gi|321159974|pdb|3PHW|D Chain D, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
gi|321159976|pdb|3PHW|F Chain F, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
gi|321159978|pdb|3PHW|H Chain H, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
gi|449802658|pdb|4HXD|A Chain A, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
gi|449802660|pdb|4HXD|C Chain C, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
Length = 75
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5822011|pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
gi|5822013|pdb|1CMX|D Chain D, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
gi|28373984|pdb|1NBF|C Chain C, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
gi|28373985|pdb|1NBF|D Chain D, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
gi|82407937|pdb|2AYO|B Chain B, Structure Of Usp14 Bound To Ubquitin Aldehyde
gi|282403539|pdb|2WDT|B Chain B, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
gi|282403540|pdb|2WDT|D Chain D, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
gi|294979880|pdb|3MHS|D Chain D, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
BOUND Ubiquitin Aldehyde
gi|312597454|pdb|3O65|B Chain B, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
gi|312597456|pdb|3O65|D Chain D, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
gi|312597458|pdb|3O65|F Chain F, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
gi|312597460|pdb|3O65|H Chain H, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
gi|371927588|pdb|3TMP|B Chain B, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
gi|371927590|pdb|3TMP|D Chain D, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
gi|371927592|pdb|3TMP|F Chain F, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
gi|371927594|pdb|3TMP|H Chain H, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
gi|377656640|pdb|4DHJ|B Chain B, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656642|pdb|4DHJ|F Chain F, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656646|pdb|4DHJ|J Chain J, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656650|pdb|4DHJ|M Chain M, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656654|pdb|4DHZ|B Chain B, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
gi|449802757|pdb|4IUM|B Chain B, Equine Arteritis Virus Papain-like Protease 2 (plp2)
Covalently Bound To Ubiquitin
gi|453055626|pdb|3ZNH|B Chain B, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 76
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|390136137|pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
gi|390136138|pdb|3RUL|B Chain B, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
gi|390136139|pdb|3RUL|C Chain C, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
gi|390136140|pdb|3RUL|D Chain D, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
gi|440690581|pdb|3VFK|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex
With Its Ligand, Using Ubiquitin As A Ligand Carrier
Length = 79
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|208558|gb|AAA72679.1| synthetic ubiquitin [synthetic construct]
Length = 76
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTICLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|225705166|gb|ACO08429.1| Ubiquitin [Oncorhynchus mykiss]
Length = 156
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPGQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLRLVL 71
>gi|392874782|gb|AFM86223.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|326561245|gb|ADZ95639.1| 40S ribosomal protein S31 [Nosema bombycis]
Length = 138
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLS 57
Query: 62 ENKVAENS--FVVIMLTKNKRPTGEGSTRSTAPT 93
+ + + S +V+ L K+ + + PT
Sbjct: 58 DYNIQKESTLHLVLRLRGGKKKNSYSTPKKVKPT 91
>gi|13172889|gb|AAK14236.1|AF321438_1 polyubiquitin GmUb1 [Galleria mellonella]
Length = 77
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENS 69
+ + + S
Sbjct: 58 DYHIQKES 65
>gi|51701999|sp|Q865C5.2|UBIQ_CAMDR RecName: Full=Ubiquitin
gi|51703336|sp|P62975.1|UBIQ_RABIT RecName: Full=Ubiquitin
gi|67474910|sp|P68197.1|UBIQ_CERCA RecName: Full=Ubiquitin
gi|442599|pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
gi|442600|pdb|1AAR|B Chain B, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
gi|494630|pdb|1TBE|A Chain A, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
gi|494631|pdb|1TBE|B Chain B, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
gi|13096129|pdb|1F9J|A Chain A, Structure Of A New Crystal Form Of Tetraubiquitin
gi|13096130|pdb|1F9J|B Chain B, Structure Of A New Crystal Form Of Tetraubiquitin
gi|33357851|pdb|1P3Q|U Chain U, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
gi|33357852|pdb|1P3Q|V Chain V, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
gi|47169417|pdb|1UZX|B Chain B, A Complex Of The Vps23 Uev With Ubiquitin
gi|61680603|pdb|1YD8|U Chain U, Complex Of Human Gga3 Gat Domain And Ubiquitin
gi|61680605|pdb|1YD8|V Chain V, Complex Of Human Gga3 Gat Domain And Ubiquitin
gi|71041888|pdb|1WR6|E Chain E, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
gi|71041889|pdb|1WR6|F Chain F, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
gi|71041890|pdb|1WR6|G Chain G, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
gi|71041891|pdb|1WR6|H Chain H, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
gi|82407398|pdb|1WRD|B Chain B, Crystal Structure Of Tom1 Gat Domain In Complex With
Ubiquitin
gi|85544518|pdb|2D3G|A Chain A, Double Sided Ubiquitin Binding Of Hrs-Uim
gi|85544519|pdb|2D3G|B Chain B, Double Sided Ubiquitin Binding Of Hrs-Uim
gi|90109001|pdb|2C7M|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109003|pdb|2C7N|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109005|pdb|2C7N|D Chain D, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109007|pdb|2C7N|F Chain F, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109009|pdb|2C7N|H Chain H, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109011|pdb|2C7N|J Chain J, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109013|pdb|2C7N|L Chain L, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109430|pdb|2FID|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
gi|90109436|pdb|2FIF|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
gi|90109438|pdb|2FIF|C Chain C, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
gi|90109440|pdb|2FIF|E Chain E, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
gi|93279866|pdb|2G45|B Chain B, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In
Complex With Ubiquitin
gi|93279868|pdb|2G45|E Chain E, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In
Complex With Ubiquitin
gi|114794333|pdb|2HD5|B Chain B, Usp2 In Complex With Ubiquitin
gi|116667303|pdb|2GMI|C Chain C, Mms2UBC13~UBIQUITIN
gi|118137630|pdb|2DX5|B Chain B, The Complex Structure Between The Mouse Eap45-Glue
Domain And Ubiquitin
gi|118137970|pdb|2HTH|A Chain A, Structural Basis For Ubiquitin Recognition By The Human
Eap45ESCRT-Ii Glue Domain
gi|126031708|pdb|2OOB|B Chain B, Crystal Structure Of The Uba Domain From Cbl-B Ubiquitin
Ligase In Complex With Ubiquitin
gi|134105062|pdb|2O6V|A Chain A, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
gi|134105064|pdb|2O6V|C Chain C, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
gi|134105066|pdb|2O6V|E Chain E, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
gi|134105068|pdb|2O6V|G Chain G, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
gi|152149262|pdb|2PE9|A Chain A, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
gi|152149263|pdb|2PE9|B Chain B, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
gi|152149264|pdb|2PEA|A Chain A, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
gi|152149265|pdb|2PEA|B Chain B, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
gi|157834056|pdb|1UBI|A Chain A, Synthetic Structural And Biological Studies Of The
Ubiquitin System. Part 1
gi|157834057|pdb|1UBQ|A Chain A, Structure Of Ubiquitin Refined At 1.8 Angstroms
Resolution
gi|158430212|pdb|2QHO|A Chain A, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
gi|158430214|pdb|2QHO|C Chain C, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
gi|158430216|pdb|2QHO|E Chain E, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
gi|158430218|pdb|2QHO|G Chain G, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
gi|159162189|pdb|1D3Z|A Chain A, Ubiquitin Nmr Structure
gi|159162335|pdb|1FXT|B Chain B, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
gi|159162877|pdb|1Q5W|B Chain B, Ubiquitin Recognition By Npl4 Zinc-Fingers
gi|159163207|pdb|1V80|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
gi|159163208|pdb|1V81|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
gi|159163622|pdb|1XQQ|A Chain A, Simultaneous Determination Of Protein Structure And
Dynamics
gi|159163779|pdb|2BGF|A Chain A, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using
Chemical Shift Perturbation Data Together With Rdcs And
15n- Relaxation Data
gi|159163780|pdb|2BGF|B Chain B, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using
Chemical Shift Perturbation Data Together With Rdcs And
15n- Relaxation Data
gi|159164087|pdb|2DEN|B Chain B, Solution Structure Of The Ubiquitin-Associated Domain Of
Human Bmsc-Ubp And Its Complex With Ubiquitin
gi|159164557|pdb|2FUH|B Chain B, Solution Structure Of The Ubch5cUB NON-Covalent Complex
gi|159164745|pdb|2NR2|A Chain A, The Mumo (Minimal Under-Restraining Minimal Over-
Restraining) Method For The Determination Of Native
States Ensembles Of Proteins
gi|160877887|pdb|2ZCC|A Chain A, Ubiquitin Crystallized Under High Pressure
gi|160877888|pdb|2ZCC|B Chain B, Ubiquitin Crystallized Under High Pressure
gi|160877889|pdb|2ZCC|C Chain C, Ubiquitin Crystallized Under High Pressure
gi|167013220|pdb|2JF5|A Chain A, Crystal Structure Of Lys63-Linked Di-Ubiquitin
gi|167013221|pdb|2JF5|B Chain B, Crystal Structure Of Lys63-Linked Di-Ubiquitin
gi|170292211|pdb|2JY6|A Chain A, Solution Structure Of The Complex Of Ubiquitin And
Ubiquilin 1 Uba Domain
gi|170784968|pdb|2JZZ|A Chain A, Solid-State Nmr Structure Of Microcrystalline Ubiquitin
gi|188595918|pdb|2Z59|B Chain B, Complex Structures Of Mouse Rpn13 (22-130aa) And
Ubiquitin
gi|192987140|pdb|2K39|A Chain A, Recognition Dynamics Up To Microseconds Revealed From
Rdc Derived Ubiquitin Ensemble In Solution
gi|193506479|pdb|2JRI|B Chain B, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
gi|193506480|pdb|2JRI|C Chain C, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
gi|217035436|pdb|3EFU|A Chain A, X-Ray Structure Of Human Ubiquitin-Hg(Ii) Adduct
gi|224983544|pdb|3EEC|A Chain A, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
gi|224983545|pdb|3EEC|B Chain B, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
gi|225698036|pdb|3EHV|A Chain A, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
gi|225698037|pdb|3EHV|B Chain B, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
gi|225698038|pdb|3EHV|C Chain C, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
gi|229597558|pdb|2K8B|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding
Domain (Pfuc) Cis Isomer In Complex With Ubiquitin
gi|229597560|pdb|2K8C|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding
Domain (Pfuc) Trans Isomer In Complex With Ubiquitin
gi|229597964|pdb|3H1U|A Chain A, Structure Of Ubiquitin In Complex With Cd Ions
gi|229597965|pdb|3H1U|B Chain B, Structure Of Ubiquitin In Complex With Cd Ions
gi|256599792|pdb|3HM3|A Chain A, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
gi|256599793|pdb|3HM3|B Chain B, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
gi|256599794|pdb|3HM3|C Chain C, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
gi|256599795|pdb|3HM3|D Chain D, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
gi|257097061|pdb|2KDE|B Chain B, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
gi|257097062|pdb|2KDE|C Chain C, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
gi|257097064|pdb|2KDF|B Chain B, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
gi|257097065|pdb|2KDF|C Chain C, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
gi|259090228|pdb|3H7P|B Chain B, Crystal Structure Of K63-Linked Di-Ubiquitin
gi|260656105|pdb|2KLG|A Chain A, Pere Nmr Structure Of Ubiquitin
gi|268612048|pdb|2KN5|A Chain A, A Correspondence Between Solution-State Dynamics Of An
Individual Protein And The Sequence And Conformational
Diversity Of Its Family
gi|269914355|pdb|2WWZ|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P212121
gi|269914356|pdb|2WWZ|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P212121
gi|269914358|pdb|2WX0|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
gi|269914359|pdb|2WX0|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
gi|269914360|pdb|2WX0|E Chain E, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
gi|269914361|pdb|2WX0|F Chain F, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
gi|269914364|pdb|2WX1|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
gi|269914365|pdb|2WX1|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
gi|269914375|pdb|3A33|B Chain B, Ubch5b~ubiquitin Conjugate
gi|291463747|pdb|3M3J|A Chain A, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|291463748|pdb|3M3J|B Chain B, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|291463749|pdb|3M3J|C Chain C, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|291463750|pdb|3M3J|D Chain D, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|291463751|pdb|3M3J|E Chain E, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|291463752|pdb|3M3J|F Chain F, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|299856910|pdb|3NHE|B Chain B, High Resolution Structure (1.26a) Of Usp2a In Complex
With Ubiquitin
gi|300508359|pdb|2XEW|A Chain A, Crystal Structure Of K11-Linked Diubiquitin
gi|300508360|pdb|2XEW|B Chain B, Crystal Structure Of K11-Linked Diubiquitin
gi|300508361|pdb|2XEW|C Chain C, Crystal Structure Of K11-Linked Diubiquitin
gi|300508362|pdb|2XEW|D Chain D, Crystal Structure Of K11-Linked Diubiquitin
gi|300508363|pdb|2XEW|E Chain E, Crystal Structure Of K11-Linked Diubiquitin
gi|300508364|pdb|2XEW|F Chain F, Crystal Structure Of K11-Linked Diubiquitin
gi|300508365|pdb|2XEW|G Chain G, Crystal Structure Of K11-Linked Diubiquitin
gi|300508366|pdb|2XEW|H Chain H, Crystal Structure Of K11-Linked Diubiquitin
gi|300508367|pdb|2XEW|I Chain I, Crystal Structure Of K11-Linked Diubiquitin
gi|300508368|pdb|2XEW|J Chain J, Crystal Structure Of K11-Linked Diubiquitin
gi|300508369|pdb|2XEW|K Chain K, Crystal Structure Of K11-Linked Diubiquitin
gi|300508370|pdb|2XEW|L Chain L, Crystal Structure Of K11-Linked Diubiquitin
gi|304445693|pdb|2XK5|A Chain A, Crystal Structure Of K6-Linked Diubiquitin
gi|304445752|pdb|3ALB|A Chain A, Cyclic Lys48-Linked Tetraubiquitin
gi|304445753|pdb|3ALB|B Chain B, Cyclic Lys48-Linked Tetraubiquitin
gi|304445754|pdb|3ALB|C Chain C, Cyclic Lys48-Linked Tetraubiquitin
gi|304445755|pdb|3ALB|D Chain D, Cyclic Lys48-Linked Tetraubiquitin
gi|306440714|pdb|3OFI|C Chain C, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
gi|306440715|pdb|3OFI|D Chain D, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
gi|308198391|pdb|2KWU|B Chain B, Solution Structure Of Ubm2 Of Murine Polymerase Iota In
Complex With Ubiquitin
gi|308198393|pdb|2KWV|B Chain B, Solution Structure Of Ubm1 Of Murine Polymerase Iota In
Complex With Ubiquitin
gi|310942516|pdb|2KTF|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2 In
Complex With Ubiquitin
gi|310942521|pdb|2L0F|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2
(P692a Mutant) In Complex With Ubiquitin
gi|315113181|pdb|2L0T|A Chain A, Solution Structure Of The Complex Of Ubiquitin And The
Vhs Domain Of Stam2
gi|317455223|pdb|3N30|A Chain A, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
gi|317455224|pdb|3N30|B Chain B, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
gi|317455225|pdb|3N32|A Chain A, The Crystal Structure Of Human Ubiquitin Adduct With
Zeise's Salt
gi|323462754|pdb|2L3Z|A Chain A, Proton-Detected 4d Dream Solid-State Nmr Structure Of
Ubiquitin
gi|323714528|pdb|3PHD|E Chain E, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
gi|323714529|pdb|3PHD|F Chain F, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
gi|323714530|pdb|3PHD|G Chain G, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
gi|323714531|pdb|3PHD|H Chain H, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
gi|326634049|pdb|2XBB|C Chain C, Nedd4 Hect:ub Complex
gi|326634050|pdb|2XBB|D Chain D, Nedd4 Hect:ub Complex
gi|335892047|pdb|2KOX|A Chain A, Nmr Residual Dipolar Couplings Identify Long Range
Correlated Motions In The Backbone Of The Protein
Ubiquitin
gi|339717352|pdb|2RR9|A Chain A, The Solution Structure Of The K63-Ub2:tuims Complex
gi|339717353|pdb|2RR9|B Chain B, The Solution Structure Of The K63-Ub2:tuims Complex
gi|340780375|pdb|3NS8|A Chain A, Crystal Structure Of An Open Conformation Of
Lys48-Linked Diubiquitin At Ph 7.5
gi|340780376|pdb|3NS8|B Chain B, Crystal Structure Of An Open Conformation Of
Lys48-Linked Diubiquitin At Ph 7.5
gi|345531668|pdb|3AUL|A Chain A, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin
In An Open Conformation
gi|345531669|pdb|3AUL|B Chain B, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin
In An Open Conformation
gi|377656602|pdb|4DDG|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656606|pdb|4DDG|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656607|pdb|4DDG|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656614|pdb|4DDG|O Chain O, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656615|pdb|4DDG|P Chain P, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656630|pdb|4DDI|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656631|pdb|4DDI|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656632|pdb|4DDI|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|387766178|pdb|3UGB|B Chain B, Ubch5c~ubiquitin Conjugate
gi|388325684|pdb|3TBL|D Chain D, Structure Of Mono-Ubiquitinated Pcna: Implications For
Dna Polymerase Switching And Okazaki Fragment
Maturation
gi|388325685|pdb|3TBL|E Chain E, Structure Of Mono-Ubiquitinated Pcna: Implications For
Dna Polymerase Switching And Okazaki Fragment
Maturation
gi|388328110|pdb|4DDG|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328111|pdb|4DDG|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328112|pdb|4DDG|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328116|pdb|4DDG|M Chain M, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328117|pdb|4DDG|N Chain N, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328118|pdb|4DDG|Q Chain Q, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328119|pdb|4DDG|R Chain R, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328123|pdb|4DDI|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328124|pdb|4DDI|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328125|pdb|4DDI|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|395759236|pdb|2LJ5|A Chain A, Description Of The Structural Fluctuations Of Proteins
From Structure- Based Calculations Of Residual Dipolar
Couplings
gi|408535776|pdb|3VHT|C Chain C, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion
Protein In Complex With Ubiquitin
gi|422919050|pdb|2LVO|A Chain A, Structure Of The Gp78cue Domain Bound To Monubiquitin
gi|422919052|pdb|2LVP|A Chain A, Gp78cue Domain Bound To The Distal Ubiquitin Of
K48-Linked Diubiquitin
gi|422919053|pdb|2LVP|B Chain B, Gp78cue Domain Bound To The Distal Ubiquitin Of
K48-Linked Diubiquitin
gi|422919055|pdb|2LVQ|A Chain A, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
gi|422919056|pdb|2LVQ|B Chain B, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
gi|449802145|pdb|3VUW|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
gi|449802146|pdb|3VUW|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
gi|449802147|pdb|3VUW|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
gi|449802151|pdb|3VUX|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
gi|449802152|pdb|3VUX|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
gi|449802153|pdb|3VUX|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
gi|449802157|pdb|3VUY|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
gi|449802159|pdb|3VUY|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
gi|449802161|pdb|3VUY|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
gi|13172891|gb|AAK14237.1|AF321439_1 polyubiquitin GmUbinta [Galleria mellonella]
gi|13172893|gb|AAK14238.1|AF321440_1 polyubiquitin GmUbintb [Galleria mellonella]
gi|16903154|gb|AAL30431.1|AF436066_1 ubiquitin [Spodoptera litura]
gi|21314345|gb|AAM46899.1|AF506023_1 polyubiquitin [Tribolium castaneum]
gi|158757|gb|AAA28999.1| ubiquitin, partial [Drosophila melanogaster]
gi|158761|gb|AAA29001.1| ubiquitin, partial [Drosophila melanogaster]
gi|158773|gb|AAA29007.1| ubiquitin, partial [Drosophila melanogaster]
gi|208552|gb|AAA72608.1| synthetic ubiquitin [synthetic construct]
gi|264606|gb|AAB25195.1| ubiquitin [rabbits, brain, Peptide, 76 aa]
gi|510472|emb|CAA52423.1| ubiquitin unit VIII [Artemia franciscana]
gi|510474|emb|CAA52417.1| ubiquitin unit II [Artemia franciscana]
gi|510475|emb|CAA52418.1| ubiquitin unit III [Artemia franciscana]
gi|510477|emb|CAA52420.1| ubiquitin unit V [Artemia franciscana]
gi|510478|emb|CAA52421.1| ubiquitin unit VI [Artemia franciscana]
gi|510479|emb|CAA52422.1| ubiquitin unit VII [Artemia franciscana]
gi|510480|emb|CAA52415.1| ubiquitin unit I [Artemia franciscana]
gi|510481|emb|CAA52424.1| ubiquitin unit IX [Artemia franciscana]
gi|531569|emb|CAA48871.1| Ubiquitin-80 [Drosophila melanogaster]
gi|30039645|gb|AAP12534.1| ubiquitin [Trichoplusia ni]
gi|38373984|gb|AAR19215.1| ubiquitin [Helicoverpa armigera]
gi|147886435|gb|ABQ52426.1| ubiqutin subunit 1, partial [Mus musculus]
gi|182341967|gb|ACB87373.1| ubiquitin [Haritalodes derogata]
gi|399227028|gb|AFP36380.1| ubiquitin [Spodoptera frugiperda]
gi|225316|prf||1212243A ubiquitin S1
gi|225318|prf||1212243C ubiquitin S3
gi|225324|prf||1212243J ubiquitin S7(2)
Length = 76
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|388857763|emb|CCF48657.1| probable polyubiquitin [Ustilago hordei]
Length = 228
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|335892055|pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using
Backbone Amide Noes And Backbone N-H And N-C Rdcs
Length = 77
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 58
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 59 DYNIQKESTLHLVL 72
>gi|347966903|ref|XP_550846.3| AGAP001971-PA [Anopheles gambiae str. PEST]
gi|333469848|gb|EAL38503.3| AGAP001971-PA [Anopheles gambiae str. PEST]
Length = 1065
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 817
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 893
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 969
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 970 DYNIQKESTLHLVL 983
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 989 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1045
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1046 DYNIQKESTLHLVL 1059
>gi|223646272|gb|ACN09894.1| Ubiquitin [Salmo salar]
gi|223672119|gb|ACN12241.1| Ubiquitin [Salmo salar]
Length = 77
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|195125345|ref|XP_002007139.1| GI12770 [Drosophila mojavensis]
gi|193918748|gb|EDW17615.1| GI12770 [Drosophila mojavensis]
Length = 991
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 817
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 893
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 969
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 970 DYNIQKESTLHLVL 983
>gi|194866181|ref|XP_001971796.1| GG14240 [Drosophila erecta]
gi|190653579|gb|EDV50822.1| GG14240 [Drosophila erecta]
Length = 991
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 817
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 893
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 969
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 970 DYNIQKESTLHLVL 983
>gi|170034793|ref|XP_001845257.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876387|gb|EDS39770.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 1065
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 817
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 893
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 969
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 970 DYNIQKESTLHLVL 983
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 989 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1045
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1046 DYNIQKESTLHLVL 1059
>gi|21429768|gb|AAM50562.1| AT20865p [Drosophila melanogaster]
Length = 1067
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 817
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 893
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 969
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 970 DYNIQKESTLHLVL 983
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 989 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1045
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1046 DYNIQKESTLHLVL 1059
>gi|304445694|pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin
Length = 76
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPQQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|208435645|pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
gi|208435649|pdb|3DVN|Y Chain Y, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
gi|208435653|pdb|3DVN|V Chain V, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 79
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 60
Query: 62 ENKVAENSFVVIML 75
+ + S + ++L
Sbjct: 61 DYNIQRESTLHLVL 74
>gi|392875450|gb|AFM86557.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|281413215|gb|ADA69136.1| ubiquitin [Chilo suppressalis]
Length = 76
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLT 76
+ + + S + ++L+
Sbjct: 58 DYDIQKESTLHLVLS 72
>gi|69608587|emb|CAJ01880.1| ubiquitin/ribosomal protein S27Ae fusion protein [Micromalthus
debilis]
Length = 156
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ V + S + ++L
Sbjct: 58 DYNVQKESTLHLVL 71
>gi|290560476|pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
gi|290560481|pdb|3LDZ|E Chain E, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
gi|290560482|pdb|3LDZ|G Chain G, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
Length = 73
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|417408300|gb|JAA50711.1| Putative ribosomal protein s27a, partial [Desmodus rotundus]
Length = 166
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 67
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 68 DYNIQKESTLHLVL 81
>gi|312380774|gb|EFR26677.1| hypothetical protein AND_07080 [Anopheles darlingi]
Length = 567
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 143 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 199
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 200 DYNIQKESTLHLVL 213
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 219 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 275
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 276 DYNIQKESTLHLVL 289
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V P +TV D+K KIE +G D QQ +I+ GK L++ +
Sbjct: 1 MQIFVKTLTGKTITLDVVPTETVLDIKSKIEEREGID---PDQQRIIFAGKQLENGRIIS 57
Query: 62 ENKVAENSFVVIML 75
+ + S + ++L
Sbjct: 58 DYNIQHGSTMHLVL 71
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFV+ L G + ++ +PE TV VK +I+ + P QQ +I+ GK L+D TLE
Sbjct: 77 MQIFVRMLTGKTIAIDTEPEATVESVKKQIDE---REEIPPNQQRMIFAGKQLEDGRTLE 133
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT 93
E + + + + I + K TG+ T P+
Sbjct: 134 EYSIIKATNMQIFV---KTLTGKTITLEVEPS 162
>gi|283459000|gb|ADB22377.1| ubiquitin [Crassostrea hongkongensis]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|119620514|gb|EAX00109.1| ribosomal protein S27a, isoform CRA_d [Homo sapiens]
Length = 87
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKV 65
+ +
Sbjct: 58 DYNI 61
>gi|56199434|gb|AAV84206.1| unknown [Culicoides sonorensis]
Length = 162
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 63
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 64 DYNIQKESTLHLVL 77
>gi|323208|gb|AAA42855.1| nonstructural protein; putative helicase/protease; contains
duplication; contains ubiquitin-coding region; putative,
partial [Bovine viral diarrhea virus 1]
Length = 1896
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 990 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1046
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1047 DYNIQKESTLHLVL 1060
>gi|60598636|gb|AAX25867.1| unknown [Schistosoma japonicum]
Length = 183
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MHIFVKTLTGNTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M IFVKT G + +EV+P DT+ +VK KI+ +G P Q LI GK +D T
Sbjct: 77 MHIFVKTSTGKTITLEVEPSDTIENVKAKIQDKEG---IPPVQHRLISAGKQSEDGRTSS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYTIQKESTLHLVL 147
>gi|148664711|gb|EDK97127.1| mCG1031578 [Mus musculus]
Length = 122
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IF+KTL G + +EVKP DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFMKTLTGKTITLEVKPSDTIENVKAKIQDKEG---IPPDQQRLIFTGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|327358507|gb|AEA51100.1| ubiquitin, partial [Oryzias melastigma]
Length = 169
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 22 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 78
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 79 DYNIQKESTLHLVL 92
>gi|197725012|pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
gi|197725015|pdb|2ZNV|E Chain E, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
gi|254574782|pdb|3A1Q|B Chain B, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
gi|254574785|pdb|3A1Q|E Chain E, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
gi|259090227|pdb|3H7P|A Chain A, Crystal Structure Of K63-Linked Di-Ubiquitin
gi|262118711|pdb|3JSV|A Chain A, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
gi|270346451|pdb|3A9J|A Chain A, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
gi|270346454|pdb|3A9K|A Chain A, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
gi|71040793|gb|AAZ20310.1| ubiquitin [Musca domestica]
Length = 76
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + S + ++L
Sbjct: 58 DYNIQRESTLHLVL 71
>gi|392874614|gb|AFM86139.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|9631359|ref|NP_048215.1| ORF MSV144 putative ubiquitin, similar to Neurospora crassa
GB:U01220 [Melanoplus sanguinipes entomopoxvirus]
gi|4049712|gb|AAC97672.1| ORF MSV144 putative ubiquitin, similar to Neurospora crassa
GB:U01220 [Melanoplus sanguinipes entomopoxvirus]
Length = 80
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IF+KTL G + +E++ DT+ ++K KI+ +G P QQ LI+ GK L+D TLE
Sbjct: 1 MQIFIKTLTGKTITIEIEANDTISNLKQKIQDKEG---IPPDQQRLIFAGKQLEDSRTLE 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392883062|gb|AFM90363.1| ubiquitin/ribosomal L40 fusion protein [Callorhinchus milii]
gi|392883064|gb|AFM90364.1| ubiquitin/ribosomal L40 fusion protein [Callorhinchus milii]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|387914034|gb|AFK10626.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392873442|gb|AFM85553.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|330688314|gb|AEC32931.1| ubiquitin [Pachycara brachycephalum]
Length = 129
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5523973|gb|AAD44039.1|AF104022_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 228
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 96 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 152
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 153 DYNIQKESTLHLVL 166
>gi|392873546|gb|AFM85605.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392873746|gb|AFM85705.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392873918|gb|AFM85791.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874206|gb|AFM85935.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874268|gb|AFM85966.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874326|gb|AFM85995.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874392|gb|AFM86028.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874486|gb|AFM86075.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874560|gb|AFM86112.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874574|gb|AFM86119.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874648|gb|AFM86156.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874714|gb|AFM86189.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874718|gb|AFM86191.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874884|gb|AFM86274.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874994|gb|AFM86329.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875042|gb|AFM86353.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875206|gb|AFM86435.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875390|gb|AFM86527.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875410|gb|AFM86537.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875770|gb|AFM86717.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875828|gb|AFM86746.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392876496|gb|AFM87080.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392876738|gb|AFM87201.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877088|gb|AFM87376.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877618|gb|AFM87641.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877774|gb|AFM87719.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877822|gb|AFM87743.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877918|gb|AFM87791.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392878102|gb|AFM87883.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392878372|gb|AFM88018.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392879328|gb|AFM88496.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392879514|gb|AFM88589.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392879830|gb|AFM88747.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392880522|gb|AFM89093.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392881620|gb|AFM89642.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392882226|gb|AFM89945.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392882556|gb|AFM90110.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392883408|gb|AFM90536.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392883792|gb|AFM90728.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392883942|gb|AFM90803.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392884134|gb|AFM90899.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|326319441|ref|YP_004237113.1| hypothetical protein Acav_4667 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376277|gb|ADX48546.1| hypothetical protein with ubiquitin-like domain [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 287
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVK L G + ++V+P D++ DVK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 40 MQIFVKMLSGETLTLDVEPSDSIEDVKSKIQDQKG---IPPEQQRLIFAGKQLEDGHTLS 96
Query: 62 ENKVAENS 69
+ + ++S
Sbjct: 97 DYNIQKDS 104
>gi|91080141|ref|XP_968519.1| PREDICTED: similar to ribosomal protein Ubq/L40e [Tribolium
castaneum]
gi|270005662|gb|EFA02110.1| hypothetical protein TcasGA2_TC007754 [Tribolium castaneum]
Length = 129
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|440904014|gb|ELR54587.1| Ubiquitin-60S ribosomal protein L40, partial [Bos grunniens
mutus]
Length = 131
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 60
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|440801804|gb|ELR22809.1| ubiquitin domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 147
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 62 ENKVAENSFVVIML------TKNKRPTGEGSTRSTAPT 93
+ + + S + ++L K K GE S R+ T
Sbjct: 58 DYNIQKESTLHLVLRLRGGGKKTKCCFGECSKRAVMIT 95
>gi|392873562|gb|AFM85613.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|357542279|gb|AET85039.1| hypothetical protein MPXG_00241 [Micromonas pusilla virus SP1]
Length = 573
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ ++K KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESVDTIDNIKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 62 ENKVAENSFVVIML-----TKNKRPTGEGSTR----STAPTKAPQSSAPTPAATPATAPQ 112
+ V + S + ++L KN PT E ST+ S T+ + A A Q
Sbjct: 58 DYNVQKESTLHLVLRLRGGVKN-LPTIERSTKVRLGSQVKTQDIKDQAEHTMVLNAGNQQ 116
Query: 113 TAVPISTEPTPAPTPAPASASVSSVSATSESGVY 146
P S APT + A+ + + T S VY
Sbjct: 117 FLAPTSNVVYIAPTCSIANTNPQGHTLTVGSNVY 150
>gi|65306618|gb|AAY41882.1| ubiquitin [Gracilaria lemaneiformis]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ D++ +VK KI+ +G P QQ LI+ GK L+DD TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|148684097|gb|EDL16044.1| mCG13235 [Mus musculus]
Length = 134
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 7 MQIFVKTLMGKTITLEVEPSDTIENVKAKIQDKEG---LPPDQQRLIFAGKQLEDGHTLS 63
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 64 DYNIQKESTLHLVL 77
>gi|225710628|gb|ACO11160.1| Ubiquitin [Caligus rogercresseyi]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|149044848|gb|EDL98034.1| rCG23287, isoform CRA_b [Rattus norvegicus]
gi|149044849|gb|EDL98035.1| rCG23287, isoform CRA_b [Rattus norvegicus]
Length = 145
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|109157814|pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
gi|109157815|pdb|2GBR|B Chain B, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
gi|109157816|pdb|2GBR|C Chain C, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
Length = 81
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQG--SDVYPAAQQMLIYQGKVLKDDTT 59
M+IFVKTL G + +EV+P DT+ +VK KI+ +G + P QQ LI+ GK L+D T
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 60 LEENKVAENSFVVIML 75
L + + + S + ++L
Sbjct: 61 LSDYNIQKESTLHLVL 76
>gi|70909913|emb|CAJ17443.1| ribosomal protein Ubq/L40e [Dascillus cervinus]
gi|70909917|emb|CAJ17445.1| ribosomal protein Ubq/L40e [Scarabaeus laticollis]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|407925275|gb|EKG18290.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 468
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV 65
VK+ + + + TV D+K K+ T + +D PA +Q LIY G+VLKD TLE KV
Sbjct: 16 VKSSNDAKYTLTLPRSTTVADLKGKLATSEYADT-PAERQRLIYSGRVLKDHDTLESTKV 74
Query: 66 AENSFVVIMLT--KNKR--PTGEGSTRSTAPTKAPQSSAPTPAAT 106
+ + + ++ + N R P +G++ +T+ AP+++ PT AT
Sbjct: 75 KDGNTIHLVKSAASNARQNPANQGTSAATSGAGAPRNNVPTSFAT 119
>gi|405951523|gb|EKC19428.1| Ubiquitin [Crassostrea gigas]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|156405092|ref|XP_001640566.1| predicted protein [Nematostella vectensis]
gi|156227701|gb|EDO48503.1| predicted protein [Nematostella vectensis]
Length = 157
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|85719967|gb|ABC75552.1| ubiquitin and ribosomal protein S27a precursor [Ictalurus
punctatus]
Length = 114
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 67
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 68 DYNIQKESTLHLVL 81
>gi|400261189|pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
gi|400261191|pdb|4AP4|F Chain F, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 80
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 61
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|339232958|ref|XP_003381596.1| ubiquitin family protein [Trichinella spiralis]
gi|316979574|gb|EFV62350.1| ubiquitin family protein [Trichinella spiralis]
Length = 152
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DTV +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 71 MQIFVKTLTGKTITLEVEPSDTVENVKGKIQDKEG---IPPDQQRLIFAGKQLEDSRTLS 127
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 128 DYNIQKESTLHLVL 141
>gi|195491526|ref|XP_002093598.1| GE20668 [Drosophila yakuba]
gi|194179699|gb|EDW93310.1| GE20668 [Drosophila yakuba]
Length = 79
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|324525461|gb|ADY48550.1| Polyubiquitin, partial [Ascaris suum]
Length = 263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D V VK KI+ +G P QQ LI+ GK L+DD TL
Sbjct: 153 MQIFVKTLTGKTLTLEVEPSDAVQHVKAKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++FVKTL G + +EV+P DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQLFVKTLTGKTITLEVEPSDTIENVKVKIQDKEG---IPPDQQRLIFAGKQLEDGRTLL 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPTKAPQS 98
+ + + S + ++L K TG+ T P+ A Q
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTLTLEVEPSDAVQH 177
>gi|183013804|gb|ACC38421.1| ubiquitin [Plutella xylostella]
gi|183013806|gb|ACC38422.1| ubiquitin [Plutella xylostella]
gi|214011145|gb|ACJ61341.1| ubiquitin DRM-UBI [Plutella xylostella]
Length = 76
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPADTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|323230|gb|AAA02769.1| polyprotein [Bovine viral diarrhea virus 1-Osloss]
Length = 3975
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D +L
Sbjct: 1591 MQIFVKTLTGRTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRSLS 1647
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1648 DYNIQKESTLHLVL 1661
>gi|354483686|ref|XP_003504023.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Cricetulus
griseus]
Length = 156
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|324525469|gb|ADY48551.1| Polyubiquitin, partial [Ascaris suum]
Length = 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D V VK KI+ +G P QQ LI+ GK L+DD TL
Sbjct: 153 MQIFVKTLTGKTLTLEVEPSDAVQHVKAKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++FVKTL G + +EV+P DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQLFVKTLTGKTITLEVEPSDTIENVKVKIQDKEG---IPPDQQRLIFAGKQLEDGRTLL 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPTKAPQS 98
+ + + S + ++L K TG+ T P+ A Q
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTLTLEVEPSDAVQH 177
>gi|119619135|gb|EAW98729.1| hCG1790904, isoform CRA_a [Homo sapiens]
Length = 177
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
++IFVKTL+G + +EV+P D + +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 52 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 108
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP 103
+ + K PT R K + S PTP
Sbjct: 109 DCNI------------QKEPTLHLLLRLCGVAKKRKKSYPTP 138
>gi|229368168|gb|ACQ59064.1| Ubiquitin [Anoplopoma fimbria]
Length = 156
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|225714096|gb|ACO12894.1| Ubiquitin [Lepeophtheirus salmonis]
gi|290462695|gb|ADD24395.1| Ubiquitin [Lepeophtheirus salmonis]
Length = 128
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874240|gb|AFM85952.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|387592393|gb|EIJ87417.1| poly-histidine-tagged ubiquitin [Nematocida parisii ERTm3]
gi|387596877|gb|EIJ94497.1| poly-histidine-tagged ubiquitin [Nematocida parisii ERTm1]
Length = 79
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|61378584|gb|AAX44930.1| ubiquitin/ribosomal fusion protein [Bubalus bubalis]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIRKESTLHLVL 71
>gi|402869938|ref|XP_003899000.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Papio
anubis]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|12240039|gb|AAG49552.1|AF268491_1 ubiquitin [Biomphalaria glabrata]
gi|12240042|gb|AAG49553.1|AF268492_1 ubiquitin [Biomphalaria glabrata]
gi|12240012|gb|AAG49540.1| ubiquitin [Biomphalaria glabrata]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|417407935|gb|JAA50559.1| Putative ubiquitin-60s ribosomal protein, partial [Desmodus
rotundus]
Length = 132
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 61
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|402904829|ref|XP_003915241.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Papio
anubis]
Length = 135
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 64
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 65 DYNIQKESTLHLVL 78
>gi|13569612|gb|AAK31162.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
Length = 141
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 14 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 70
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 71 DYNIQKESTLHLVL 84
>gi|308512650|gb|ADO32980.1| ubiquitin b [Eriocheir sinensis]
gi|320382413|gb|ADW27185.1| ubiquitin/ribosomal L40 fusion protein [Eriocheir sinensis]
Length = 129
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|302393781|sp|P62976.2|UBIQP_CRIGR RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin;
Contains: RecName: Full=Ubiquitin-related 1; Contains:
RecName: Full=Ubiquitin-related 2; Flags: Precursor
gi|940395|dbj|BAA09853.1| polyubiquitin [Cricetulus sp.]
Length = 658
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ QG P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
>gi|5441519|emb|CAB46814.1| ubiquitin-ribosomal protein L40 fusion protein [Canis lupus
familiaris]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|225703194|gb|ACO07443.1| Ubiquitin [Oncorhynchus mykiss]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|213512766|ref|NP_001133215.1| ubiquitin A-52 residue ribosomal protein fusion product 1like 2
[Salmo salar]
gi|197632325|gb|ACH70886.1| ubiquitin A-52 residue ribosomal protein fusion product 1-like
[Salmo salar]
gi|197632609|gb|ACH71028.1| ubiquitin A-52 residue ribosomal protein fusion product 1like 2
[Salmo salar]
gi|209731296|gb|ACI66517.1| Ubiquitin [Salmo salar]
gi|209731836|gb|ACI66787.1| Ubiquitin [Salmo salar]
gi|221219244|gb|ACM08283.1| Ubiquitin [Salmo salar]
gi|225704338|gb|ACO08015.1| Ubiquitin [Oncorhynchus mykiss]
gi|225705386|gb|ACO08539.1| Ubiquitin [Oncorhynchus mykiss]
gi|303661345|gb|ADM16032.1| Ubiquitin [Salmo salar]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|15236291|ref|NP_192245.1| Ubiquitin family protein [Arabidopsis thaliana]
gi|4262165|gb|AAD14465.1| putative ubiquitin-like protein [Arabidopsis thaliana]
gi|7270206|emb|CAB77821.1| putative protein [Arabidopsis thaliana]
gi|67633728|gb|AAY78788.1| ubiquitin family protein [Arabidopsis thaliana]
gi|332656910|gb|AEE82310.1| Ubiquitin family protein [Arabidopsis thaliana]
Length = 284
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+K+ ++ G+SF ++V DTV +K KIE QG+ P ++Q+LI++ KVL+D +
Sbjct: 1 MIKVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGT---PVSKQILIFKRKVLQDHLNM 57
Query: 61 EENKVAENSFVVIMLTKNKRPT 82
++ NS +++ ++ + PT
Sbjct: 58 FGCQIRHNSRILLSISPDDNPT 79
>gi|70909907|emb|CAJ17440.1| ribosomal protein Ubq/L40e [Agriotes lineatus]
gi|70909909|emb|CAJ17441.1| ribosomal protein Ubq/L40e [Biphyllus lunatus]
gi|70909911|emb|CAJ17442.1| ribosomal protein Ubq/L40e [Carabus granulatus]
gi|70909915|emb|CAJ17444.1| ribosomal protein Ubq/L40e [Julodis onopordi]
gi|332373432|gb|AEE61857.1| unknown [Dendroctonus ponderosae]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|152013697|gb|ABS19964.1| ubiquitin/ribosomal L40 fusion protein [Artemia franciscana]
Length = 129
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|124300855|dbj|BAF45923.1| ubiquitin [Solea senegalensis]
gi|164691021|dbj|BAF98693.1| ribosomal protein L40 [Solea senegalensis]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|80751129|ref|NP_001032190.1| 60S ribosomal protein L40 [Danio rerio]
gi|77567706|gb|AAI07518.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Danio
rerio]
gi|111494058|gb|AAI05747.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Danio
rerio]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|328864214|gb|AEB53190.1| ubuiquitin/ribosomal L40 fusion protein [Holothuria glaberrima]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5523985|gb|AAD44045.1|AF104028_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 357
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 225 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 281
Query: 62 ENKVAENSFVVIML 75
+ + S + ++L
Sbjct: 282 GYNIQKESTLHLVL 295
>gi|149063233|gb|EDM13556.1| rCG21222, isoform CRA_b [Rattus norvegicus]
Length = 179
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 54 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 110
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 111 DYNIQKESTLHLVL 124
>gi|61741081|gb|AAX54508.1| ubiquitin/ribosomal 27a [Marsupenaeus japonicus]
Length = 141
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|294860860|gb|ADF45326.1| ubiquitin/ribosomal S27 fusion protein 2 [Eriocheir sinensis]
Length = 157
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|123316118|gb|ABM74399.1| ubiquitin [Portunus pelagicus]
Length = 154
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|56078799|gb|AAH53371.1| Ribosomal protein S27a [Homo sapiens]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|66361226|pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX
gi|66361228|pdb|1YX6|B Chain B, Solution Structure Of S5a Uim-2UBIQUITIN COMPLEX
Length = 98
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|291231495|ref|XP_002735697.1| PREDICTED: ribosomal protein L40-like isoform 1 [Saccoglossus
kowalevskii]
gi|291231497|ref|XP_002735698.1| PREDICTED: ribosomal protein L40-like isoform 2 [Saccoglossus
kowalevskii]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|164510078|emb|CAJ32643.1| ubiquitin [Littorina littorea]
gi|164510090|emb|CAJ32649.1| ubiquitin [Rimicaris exoculata]
Length = 76
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLT 76
+ + + S + ++L+
Sbjct: 58 DYNIQKESTLHLVLS 72
>gi|55228560|gb|AAV44215.1| ubuiquitin/ribosomal L40 fusion protein [Scleronephthya
gracillimum]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|94378076|ref|XP_001002242.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Mus
musculus]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|164510086|emb|CAJ32647.1| ubiquitin [Chorocaris chacei]
Length = 76
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLT 76
+ + + S + ++L+
Sbjct: 58 DYNIQKESTLHLVLS 72
>gi|392877630|gb|AFM87647.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|327276048|ref|XP_003222783.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Anolis
carolinensis]
Length = 77
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++FVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQVFVKTLTGKTITLEVEPSDTIENVKAKIQEKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|226484047|emb|CAX79692.1| ubiquitin C [Schistosoma japonicum]
Length = 229
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK LKD TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLKDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|125742521|gb|ABN54483.1| putative ubiquitin/ribosomal protein S27Ae fusion protein
[Oncopeltus fasciatus]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|9634344|ref|NP_037883.1| ORF123 v-ubiquitin [Spodoptera exigua MNPV]
gi|6960582|gb|AAF33652.1| ORF123 v-ubiquitin [Spodoptera exigua MNPV]
Length = 80
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VEV+ DTV VK KI +G P QQ LIY GK L+D T+
Sbjct: 1 MQIFVKTLTGKTVTVEVESTDTVEQVKQKITDKEG---IPPDQQRLIYAGKQLEDTRTMS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|67191208|ref|NP_066289.2| polyubiquitin-C [Homo sapiens]
Length = 685
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P+ QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPSDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
>gi|4507761|ref|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens]
gi|9845265|ref|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus musculus]
gi|13928952|ref|NP_113875.1| ubiquitin-60S ribosomal protein L40 [Rattus norvegicus]
gi|47523498|ref|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa]
gi|52346160|ref|NP_001005123.1| ubiquitin A-52 residue ribosomal protein fusion product 1
[Xenopus (Silurana) tropicalis]
gi|57164317|ref|NP_001009286.1| ubiquitin-60S ribosomal protein L40 [Ovis aries]
gi|77539055|ref|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens]
gi|115496708|ref|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos taurus]
gi|148236927|ref|NP_001085456.1| ubiquitin A-52 residue ribosomal protein fusion product 1
[Xenopus laevis]
gi|197101265|ref|NP_001124707.1| 60S ribosomal protein L40 [Pongo abelii]
gi|224994156|ref|NP_001116826.1| ubiquitin A-52 residue ribosomal protein fusion product 1
precursor [Felis catus]
gi|224994158|ref|NP_001121567.1| ubiquitin-60S ribosomal protein L40 [Canis lupus familiaris]
gi|307691235|ref|NP_001182685.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Macaca
mulatta]
gi|334878539|ref|NP_001229382.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Equus
caballus]
gi|126323475|ref|XP_001363046.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Monodelphis
domestica]
gi|296233314|ref|XP_002761958.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Callithrix jacchus]
gi|296233316|ref|XP_002761959.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 3
[Callithrix jacchus]
gi|301753933|ref|XP_002912779.1| PREDICTED: ubiquitin-like [Ailuropoda melanoleuca]
gi|332854147|ref|XP_001135183.2| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Pan
troglodytes]
gi|332854157|ref|XP_003316254.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Pan
troglodytes]
gi|332854161|ref|XP_003339364.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 6 [Pan
troglodytes]
gi|332854165|ref|XP_003316256.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Pan
troglodytes]
gi|332854172|ref|XP_003339365.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 7 [Pan
troglodytes]
gi|332854176|ref|XP_003316259.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Pan
troglodytes]
gi|345327641|ref|XP_001508987.2| PREDICTED: ubiquitin-60S ribosomal protein L40-like
[Ornithorhynchus anatinus]
gi|354473967|ref|XP_003499203.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 1
[Cricetulus griseus]
gi|354473969|ref|XP_003499204.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Cricetulus griseus]
gi|395847937|ref|XP_003796620.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1
[Otolemur garnettii]
gi|395847939|ref|XP_003796621.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2
[Otolemur garnettii]
gi|397493849|ref|XP_003817808.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Pan
paniscus]
gi|397493851|ref|XP_003817809.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Pan
paniscus]
gi|397493853|ref|XP_003817810.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Pan
paniscus]
gi|397493855|ref|XP_003817811.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Pan
paniscus]
gi|397493857|ref|XP_003817812.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Pan
paniscus]
gi|397493859|ref|XP_003817813.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 6 [Pan
paniscus]
gi|397493863|ref|XP_003817815.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 8 [Pan
paniscus]
gi|397493865|ref|XP_003817816.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 9 [Pan
paniscus]
gi|397493867|ref|XP_003817817.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 10 [Pan
paniscus]
gi|402904821|ref|XP_003915237.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Papio
anubis]
gi|402904823|ref|XP_003915238.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Papio
anubis]
gi|402904825|ref|XP_003915239.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Papio
anubis]
gi|402904827|ref|XP_003915240.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Papio
anubis]
gi|403303449|ref|XP_003942339.1| PREDICTED: ubiquitin-60S ribosomal protein L40 [Saimiri
boliviensis boliviensis]
gi|410053489|ref|XP_003953464.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 8 [Pan
troglodytes]
gi|410053491|ref|XP_003953465.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 9 [Pan
troglodytes]
gi|426387846|ref|XP_004060373.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Gorilla
gorilla gorilla]
gi|426387848|ref|XP_004060374.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Gorilla
gorilla gorilla]
gi|426387850|ref|XP_004060375.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Gorilla
gorilla gorilla]
gi|426387852|ref|XP_004060376.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Gorilla
gorilla gorilla]
gi|426387856|ref|XP_004060378.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 6 [Gorilla
gorilla gorilla]
gi|426387858|ref|XP_004060379.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 7 [Gorilla
gorilla gorilla]
gi|426387860|ref|XP_004060380.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 8 [Gorilla
gorilla gorilla]
gi|426387862|ref|XP_004060381.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 9 [Gorilla
gorilla gorilla]
gi|426387864|ref|XP_004060382.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 10
[Gorilla gorilla gorilla]
gi|302393708|sp|P63048.2|RL40_BOVIN RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393711|sp|P63050.2|RL40_CANFA RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393717|sp|P63052.2|RL40_FELCA RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393718|sp|P62987.2|RL40_HUMAN RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=CEP52; AltName: Full=Ubiquitin A-52 residue
ribosomal protein fusion product 1; Contains: RecName:
Full=Ubiquitin; Contains: RecName: Full=60S ribosomal
protein L40; Flags: Precursor
gi|302393721|sp|P0C273.2|RL40_MACFA RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393722|sp|P62984.2|RL40_MOUSE RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393725|sp|P68205.2|RL40_OPHHA RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=60S
ribosomal protein L40; AltName: Full=CEP52; Flags:
Precursor
gi|302393726|sp|P63053.2|RL40_PIG RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=CEP52; AltName: Full=Ubiquitin A-52 residue
ribosomal protein fusion product 1; Contains: RecName:
Full=Ubiquitin; Contains: RecName: Full=60S ribosomal
protein L40; Flags: Precursor
gi|302393727|sp|P0C275.2|RL40_PONPY RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393728|sp|P62986.2|RL40_RAT RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393729|sp|P0C276.2|RL40_SHEEP RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|7439591|pir||I65237 ubiquitin / ribosomal protein L40, cytosolic [validated] - rat
gi|10442712|gb|AAG17445.1|AF297036_1 ubiquitin fusion protein [Ophiophagus hannah]
gi|37565|emb|CAA40313.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|37567|emb|CAA40312.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|37569|emb|CAA40314.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|600538|gb|AAA56988.1| ubiquitin [synthetic construct]
gi|1050758|emb|CAA57958.1| ubiquitin/ribosomal protein L40 [Rattus norvegicus]
gi|1628608|gb|AAB52914.1| ubiquitin/ribosomal fusion protein [Sus scrofa]
gi|3288887|gb|AAC25582.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|4139066|gb|AAD03678.1| ubiquitin/ribosomal protein CEP52 fusion protein [Cricetulus sp.]
gi|4262555|gb|AAD14688.1| ubiquitin/60S ribosomal fusion protein [Mus musculus]
gi|5822852|dbj|BAA83996.1| ubiquitin [Canis lupus familiaris]
gi|6692804|dbj|BAA89414.1| ubiquitin [Felis catus]
gi|12858585|dbj|BAB31371.1| unnamed protein product [Mus musculus]
gi|15928599|gb|AAH14772.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|32484364|gb|AAH54413.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|38494519|gb|AAH61544.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Rattus
norvegicus]
gi|45642969|gb|AAS72379.1| ubiqitin RPL40 fusion protein [Ovis aries]
gi|49255973|gb|AAH72791.1| MGC80109 protein [Xenopus laevis]
gi|50603988|gb|AAH77658.1| ubiquitin A-52 residue ribosomal protein fusion product 1
[Xenopus (Silurana) tropicalis]
gi|51874063|gb|AAH80838.1| Uba52 protein [Mus musculus]
gi|55725462|emb|CAH89595.1| hypothetical protein [Pongo abelii]
gi|56541098|gb|AAH86924.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|56971100|gb|AAH87922.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|67969366|dbj|BAE01035.1| unnamed protein product [Macaca fascicularis]
gi|74268013|gb|AAI02249.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Bos
taurus]
gi|75516919|gb|AAI01833.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|75517948|gb|AAI01831.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|89269516|emb|CAJ83027.1| ubiquitin A-52 residue ribosomal protein fusion product 1
[Xenopus (Silurana) tropicalis]
gi|92918941|gb|ABE96835.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|119605121|gb|EAW84715.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Homo sapiens]
gi|119605122|gb|EAW84716.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Homo sapiens]
gi|119605123|gb|EAW84717.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Homo sapiens]
gi|119605124|gb|EAW84718.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Homo sapiens]
gi|148673756|gb|EDL05703.1| mCG6478 [Mus musculus]
gi|148696881|gb|EDL28828.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696882|gb|EDL28829.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696883|gb|EDL28830.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696884|gb|EDL28831.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696885|gb|EDL28832.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696886|gb|EDL28833.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696887|gb|EDL28834.1| mCG23116, isoform CRA_a [Mus musculus]
gi|149036028|gb|EDL90694.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Rattus norvegicus]
gi|149036029|gb|EDL90695.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Rattus norvegicus]
gi|149036030|gb|EDL90696.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Rattus norvegicus]
gi|189054488|dbj|BAG37261.1| unnamed protein product [Homo sapiens]
gi|219518886|gb|AAI43669.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|281343542|gb|EFB19126.1| hypothetical protein PANDA_000559 [Ailuropoda melanoleuca]
gi|296486182|tpg|DAA28295.1| TPA: ubiquitin and ribosomal protein L40 [Bos taurus]
gi|307686201|dbj|BAJ21031.1| ubiquitin A-52 residue ribosomal protein fusion product 1
[synthetic construct]
gi|327239326|gb|AEA39530.1| ribosomal protein L40 [Ailuropoda melanoleuca]
gi|327239426|gb|AEA39580.1| ribosomal protein L40 [Ailuropoda melanoleuca]
gi|351713798|gb|EHB16717.1| Ubiquitin [Heterocephalus glaber]
gi|384949206|gb|AFI38208.1| ubiquitin-60S ribosomal protein L40 precursor [Macaca mulatta]
gi|387018310|gb|AFJ51273.1| Ubiquitin-60S ribosomal protein L40 [Crotalus adamanteus]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|209730830|gb|ACI66284.1| Ubiquitin [Salmo salar]
Length = 127
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IF+KTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFIKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ V + S + ++L
Sbjct: 58 DYNVQKESTLHLVL 71
>gi|164510076|emb|CAJ32642.1| ubiquitin [Littorina littorea]
Length = 76
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|185134441|ref|NP_001117666.1| ubiquitin [Oncorhynchus mykiss]
gi|348523133|ref|XP_003449078.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Oreochromis
niloticus]
gi|6633991|dbj|BAA88568.1| ubiquitin [Oncorhynchus mykiss]
gi|113707410|gb|ABI36601.1| ubiquitin/ribosomal protein L40 fusion protein [Bufo gargarizans]
gi|197632607|gb|ACH71027.1| ubiquitin A-52 residue ribosomal protein fusion product 1like 1
[Salmo salar]
gi|223646494|gb|ACN10005.1| Ubiquitin [Salmo salar]
gi|223672341|gb|ACN12352.1| Ubiquitin [Salmo salar]
gi|300677970|gb|ADK27292.1| ubiquitin [Siniperca chuatsi]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|50344522|emb|CAH04347.1| ubiquitin/S27Ae ribosomal protein [Carabus granulatus]
gi|50344524|emb|CAH04348.1| ubiquitin/S27Ae ribosomal protein [Biphyllus lunatus]
gi|69608571|emb|CAJ01877.1| ubiquitin/ribosomal protein S27Ae fusion protein [Cicindela
campestris]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|387914190|gb|AFK10704.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|323714499|pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal
Form
Length = 72
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|300422605|dbj|BAJ10868.1| ubiquitin C [Callithrix jacchus]
Length = 99
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|69608566|emb|CAJ01876.1| ubiquitin/ribosomal protein S27Ae fusion protein [Agriotes
lineatus]
Length = 157
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|337263153|gb|AEI69279.1| ribosomal protein L40 [Oncorhynchus masou formosanus]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|91077776|ref|XP_969023.1| PREDICTED: similar to ubiquitin/S27Ae ribosomal protein
[Tribolium castaneum]
gi|270002242|gb|EEZ98689.1| hypothetical protein TcasGA2_TC001225 [Tribolium castaneum]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|17136570|ref|NP_476776.1| ribosomal protein L40, isoform A [Drosophila melanogaster]
gi|442625834|ref|NP_001260018.1| ribosomal protein L40, isoform B [Drosophila melanogaster]
gi|58390190|ref|XP_317555.2| AGAP007927-PA [Anopheles gambiae str. PEST]
gi|125986696|ref|XP_001357111.1| GA15543 [Drosophila pseudoobscura pseudoobscura]
gi|157113624|ref|XP_001652028.1| anopheles stephensi ubiquitin [Aedes aegypti]
gi|170032305|ref|XP_001844022.1| anopheles stephensi ubiquitin [Culex quinquefasciatus]
gi|194758697|ref|XP_001961598.1| GF15052 [Drosophila ananassae]
gi|194855956|ref|XP_001968650.1| GG24988 [Drosophila erecta]
gi|195035911|ref|XP_001989415.1| GH10063 [Drosophila grimshawi]
gi|195114034|ref|XP_002001572.1| GI16482 [Drosophila mojavensis]
gi|195160144|ref|XP_002020936.1| GL13989 [Drosophila persimilis]
gi|195401058|ref|XP_002059131.1| GJ16220 [Drosophila virilis]
gi|195437464|ref|XP_002066660.1| GK24609 [Drosophila willistoni]
gi|195471224|ref|XP_002087905.1| RpL40 [Drosophila yakuba]
gi|195550845|ref|XP_002076117.1| GD12014 [Drosophila simulans]
gi|302393715|sp|P18101.2|RL40_DROME RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=CEP52; Contains: RecName: Full=Ubiquitin;
Contains: RecName: Full=60S ribosomal protein L40;
Flags: Precursor
gi|16118870|gb|AAL14636.1|AF418984_1 ubiquitin-52-amino-acid fusion protein [Aedes aegypti]
gi|8779|emb|CAA37227.1| unnamed protein product [Drosophila melanogaster]
gi|8785|emb|CAA42568.1| ubiquitin extension protein [Drosophila melanogaster]
gi|7295730|gb|AAF51034.1| ribosomal protein L40, isoform A [Drosophila melanogaster]
gi|16074119|emb|CAC94469.1| anopheles stephensi ubiquitin [Anopheles stephensi]
gi|18447400|gb|AAL68264.1| RE10554p [Drosophila melanogaster]
gi|38047797|gb|AAR09801.1| similar to Drosophila melanogaster RpL40, partial [Drosophila
yakuba]
gi|38048585|gb|AAR10195.1| similar to Drosophila melanogaster RpL40, partial [Drosophila
yakuba]
gi|54645438|gb|EAL34177.1| GA15543 [Drosophila pseudoobscura pseudoobscura]
gi|55237763|gb|EAA12215.2| AGAP007927-PA [Anopheles gambiae str. PEST]
gi|56417572|gb|AAV90727.1| 60S ribosomal protein L40 [Aedes albopictus]
gi|108877674|gb|EAT41899.1| AAEL006511-PA [Aedes aegypti]
gi|114864908|gb|ABI83782.1| ubiquitin [Anopheles funestus]
gi|167872308|gb|EDS35691.1| anopheles stephensi ubiquitin [Culex quinquefasciatus]
gi|190615295|gb|EDV30819.1| GF15052 [Drosophila ananassae]
gi|190660517|gb|EDV57709.1| GG24988 [Drosophila erecta]
gi|193905415|gb|EDW04282.1| GH10063 [Drosophila grimshawi]
gi|193912147|gb|EDW11014.1| GI16482 [Drosophila mojavensis]
gi|194117886|gb|EDW39929.1| GL13989 [Drosophila persimilis]
gi|194156005|gb|EDW71189.1| GJ16220 [Drosophila virilis]
gi|194162745|gb|EDW77646.1| GK24609 [Drosophila willistoni]
gi|194174006|gb|EDW87617.1| RpL40 [Drosophila yakuba]
gi|194201766|gb|EDX15342.1| GD12014 [Drosophila simulans]
gi|208657505|gb|ACI30049.1| ubiquitin/60S ribosomal protein L40 fusion [Anopheles darlingi]
gi|220947932|gb|ACL86509.1| RpL40-PA [synthetic construct]
gi|220957162|gb|ACL91124.1| RpL40-PA [synthetic construct]
gi|255710365|gb|ACU31002.1| ubiquitin/60S ribosomal protein L40 fusion [Ochlerotatus
triseriatus]
gi|270211317|gb|ACZ64922.1| ubiquitin-L40 ribosomal fusion protein [Aedes aegypti]
gi|312374067|gb|EFR21714.1| hypothetical protein AND_29478 [Anopheles darlingi]
gi|440213300|gb|AGB92554.1| ribosomal protein L40, isoform B [Drosophila melanogaster]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|17136574|ref|NP_476778.1| ribosomal protein S27A [Drosophila melanogaster]
gi|194761816|ref|XP_001963119.1| GF15783 [Drosophila ananassae]
gi|194859914|ref|XP_001969479.1| GG10127 [Drosophila erecta]
gi|195050553|ref|XP_001992918.1| GH13542 [Drosophila grimshawi]
gi|195146884|ref|XP_002014414.1| GL18966 [Drosophila persimilis]
gi|195339809|ref|XP_002036509.1| GM18339 [Drosophila sechellia]
gi|195387453|ref|XP_002052410.1| GJ21841 [Drosophila virilis]
gi|195457480|ref|XP_002075583.1| GK18589 [Drosophila willistoni]
gi|195473659|ref|XP_002089110.1| GE18939 [Drosophila yakuba]
gi|195476197|ref|XP_002086031.1| RpS27A [Drosophila yakuba]
gi|195578195|ref|XP_002078951.1| GD23696 [Drosophila simulans]
gi|198476974|ref|XP_002136823.1| GA24218 [Drosophila pseudoobscura pseudoobscura]
gi|302393744|sp|P15357.2|RS27A_DROME RecName: Full=Ubiquitin-40S ribosomal protein S27a; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|158755|gb|AAA28998.1| ubiquitin-hybrid protein precursor [Drosophila melanogaster]
gi|7297689|gb|AAF52941.1| ribosomal protein S27A [Drosophila melanogaster]
gi|25012622|gb|AAN71408.1| RE44350p [Drosophila melanogaster]
gi|38047521|gb|AAR09663.1| similar to Drosophila melanogaster RpS27A, partial [Drosophila
yakuba]
gi|38048335|gb|AAR10070.1| similar to Drosophila melanogaster RpS27A, partial [Drosophila
yakuba]
gi|190616816|gb|EDV32340.1| GF15783 [Drosophila ananassae]
gi|190661346|gb|EDV58538.1| GG10127 [Drosophila erecta]
gi|193899977|gb|EDV98843.1| GH13542 [Drosophila grimshawi]
gi|194106367|gb|EDW28410.1| GL18966 [Drosophila persimilis]
gi|194130389|gb|EDW52432.1| GM18339 [Drosophila sechellia]
gi|194148867|gb|EDW64565.1| GJ21841 [Drosophila virilis]
gi|194171668|gb|EDW86569.1| GK18589 [Drosophila willistoni]
gi|194175211|gb|EDW88822.1| GE18939 [Drosophila yakuba]
gi|194185890|gb|EDW99501.1| RpS27A [Drosophila yakuba]
gi|194190960|gb|EDX04536.1| GD23696 [Drosophila simulans]
gi|198145148|gb|EDY71852.1| GA24218 [Drosophila pseudoobscura pseudoobscura]
gi|220950462|gb|ACL87774.1| RpS27A-PA [synthetic construct]
gi|220959398|gb|ACL92242.1| RpS27A-PA [synthetic construct]
gi|255760108|gb|ACU32638.1| SD13292p [Drosophila melanogaster]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|428168160|gb|EKX37108.1| ubiquitin [Guillardia theta CCMP2712]
Length = 199
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 53 MQIFVKTLTGKTITLEVESSDTIDMVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 109
Query: 62 ENKVAENSFVVIMLTKN---KRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
+ + + S + ++L K+ EG T AP P+T +
Sbjct: 110 DYNIQKESTLHLVLRLRGGAKKCNHEGCTSKVAPIIGDCKYCQHKFCGSHRLPETHCCAA 169
Query: 119 TEPTPA 124
+ A
Sbjct: 170 MDTCKA 175
>gi|361129234|gb|EHL01146.1| putative UV excision repair protein rhp23 [Glarea lozoyensis 74030]
Length = 321
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 83/193 (43%), Gaps = 42/193 (21%)
Query: 126 TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRA 185
TP PA S+ S S S L G I ++ MG ++R + A+RA
Sbjct: 54 TPTPAGTGASAPSGNS---------SGLAMGAERAAQIAEMESMG---FERSQIDLAMRA 101
Query: 186 AYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPL 245
A+ N ERA+EYL +GIPE +Q RAP A+ + P PA + P
Sbjct: 102 AFFNSERAIEYLLTGIPE--NLQQEQRAPPAADASADTSDAP----PAAEDQAAAGV-PD 154
Query: 246 DLFPQGLPDVGSGAAGAGS----------------------LDFLRNSPQFQVLRAMVQA 283
DLF + +G G GS LDFLRN+ QFQ LR +VQ
Sbjct: 155 DLFERARLGAAAGGGGGGSPFGSMGAGGAAGAGAAPGGLGNLDFLRNNAQFQQLRQVVQQ 214
Query: 284 NPQLF-PCFKSWG 295
NPQ+ P + G
Sbjct: 215 NPQMLEPILQQVG 227
>gi|15187109|gb|AAK91296.1|AF395864_1 ubiquitin [Branchiostoma belcheri]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|209171025|ref|YP_002268172.1| agip142 [Agrotis ipsilon multiple nucleopolyhedrovirus]
gi|208436616|gb|ACI28843.1| ubiquitin [Agrotis ipsilon multiple nucleopolyhedrovirus]
Length = 82
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VEV+ DTV +K KI +G P QQ LIY GK L+D T+
Sbjct: 1 MQIFVKTLTGKTLTVEVESTDTVEQLKQKITDKEG---IPPDQQRLIYSGKQLEDSRTMS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESNIHLVL 71
>gi|195116685|ref|XP_002002882.1| GI10618 [Drosophila mojavensis]
gi|193913457|gb|EDW12324.1| GI10618 [Drosophila mojavensis]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|152925970|gb|ABS32204.1| ubiquitin fusion protein [Cyprinus carpio]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874444|gb|AFM86054.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|110671470|gb|ABG81986.1| putative ubiquitin/ribosomal fusion protein [Diaphorina citri]
Length = 129
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|51247357|pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant
Of Ubiquitin
Length = 88
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+++F+KTL G +F VE++P DT+ ++K KI+ +G P QQ LI+ GK L+D TL
Sbjct: 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 66
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 67 DYNIQKESTLHLVL 80
>gi|194246105|gb|ACF35544.1| ubiquitin/ribosomal protein S27a fusion protein [Dermacentor
variabilis]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|195342419|ref|XP_002037798.1| GM18458 [Drosophila sechellia]
gi|194132648|gb|EDW54216.1| GM18458 [Drosophila sechellia]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|123479154|ref|XP_001322736.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121905588|gb|EAY10513.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+ D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVESTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|74229710|ref|YP_308914.1| viral ubiquitin (v-ubi) [Trichoplusia ni SNPV]
gi|72259624|gb|AAZ67395.1| viral ubiquitin (v-ubi) [Trichoplusia ni SNPV]
Length = 77
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++FVKTL G S +EV+ DT+ VK KI +G P QQ LIY GK L+DD +
Sbjct: 1 MQVFVKTLTGKSITIEVEANDTIEQVKQKITDKEG---IPPDQQRLIYGGKQLEDDRNVS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|47604951|ref|NP_990284.1| ubiquitin-40S ribosomal protein S27a [Gallus gallus]
gi|224047492|ref|XP_002199635.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Taeniopygia
guttata]
gi|302393814|sp|P79781.3|RS27A_CHICK RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|1763015|gb|AAC60279.1| ubiquitin/ribosomal protein [Gallus gallus]
gi|300676798|gb|ADK26674.1| ribosomal protein S27a [Zonotrichia albicollis]
gi|300676895|gb|ADK26767.1| ribosomal protein S27a [Zonotrichia albicollis]
gi|387018372|gb|AFJ51304.1| Ubiquitin-40S ribosomal protein S27a-like [Crotalus adamanteus]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|323454622|gb|EGB10492.1| hypothetical protein AURANDRAFT_23768 [Aureococcus
anophagefferens]
Length = 217
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|188572494|gb|ACD65153.1| putative ubiquitin/40S ribosomal protein RPS27A fusion protein
[Phoronis muelleri]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|395854973|ref|XP_003799950.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Otolemur
garnettii]
Length = 155
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGDTLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT 93
+ + + S + ++L R G R + T
Sbjct: 58 DYNIQKESTLHLVL----RLCGGAKKRKKSYT 85
>gi|283807117|pdb|3JVZ|X Chain X, E2~ubiquitin-Hect
gi|283807118|pdb|3JVZ|Y Chain Y, E2~ubiquitin-Hect
gi|283807123|pdb|3JW0|X Chain X, E2~ubiquitin-Hect
gi|283807124|pdb|3JW0|Y Chain Y, E2~ubiquitin-Hect
gi|400977356|pdb|4AUQ|C Chain C, Structure Of Birc7-Ubch5b-Ub Complex.
gi|400977359|pdb|4AUQ|F Chain F, Structure Of Birc7-Ubch5b-Ub Complex
Length = 81
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 62
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 63 DYNIQKESTLHLVL 76
>gi|13195690|ref|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus]
gi|13592077|ref|NP_112375.1| ubiquitin-40S ribosomal protein S27a [Rattus norvegicus]
gi|76443694|ref|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus]
gi|392333172|ref|XP_003752815.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|392353337|ref|XP_003751469.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|302393751|sp|P62983.2|RS27A_MOUSE RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|302393757|sp|P62982.2|RS27A_RAT RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|1050756|emb|CAA57432.1| fusion protein: ubiquitin (bases 43_513); ribosomal protein S27a
(bases 217_532) [Rattus norvegicus]
gi|12805285|gb|AAH02108.1| Ribosomal protein S27A [Mus musculus]
gi|12858551|dbj|BAB31357.1| unnamed protein product [Mus musculus]
gi|37194821|gb|AAH58139.1| Ribosomal protein S27a [Rattus norvegicus]
gi|51980723|gb|AAH81446.1| Ribosomal protein S27A [Mus musculus]
gi|66570876|gb|AAH96392.1| Ribosomal protein S27A [Mus musculus]
gi|148691854|gb|EDL23801.1| mCG13441 [Mus musculus]
gi|148694516|gb|EDL26463.1| mCG15222 [Mus musculus]
gi|149044846|gb|EDL98032.1| rCG23287, isoform CRA_a [Rattus norvegicus]
gi|149044847|gb|EDL98033.1| rCG23287, isoform CRA_a [Rattus norvegicus]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874038|gb|AFM85851.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392874278|gb|AFM85971.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392874794|gb|AFM86229.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875122|gb|AFM86393.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875212|gb|AFM86438.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875294|gb|AFM86479.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875394|gb|AFM86529.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875518|gb|AFM86591.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875602|gb|AFM86633.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392876790|gb|AFM87227.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392877316|gb|AFM87490.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392877846|gb|AFM87755.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392882382|gb|AFM90023.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392882466|gb|AFM90065.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392883624|gb|AFM90644.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392884160|gb|AFM90912.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392884208|gb|AFM90936.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392884248|gb|AFM90956.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392883082|gb|AFM90373.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLAGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|312371071|gb|EFR19336.1| hypothetical protein AND_22679 [Anopheles darlingi]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|90819968|gb|ABD98741.1| putative ubiquitin/ribosomal protein S27Ae fusion protein
[Graphocephala atropunctata]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|4506713|ref|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
gi|27807503|ref|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos taurus]
gi|62859181|ref|NP_001016172.1| ribosomal protein S27a [Xenopus (Silurana) tropicalis]
gi|148222699|ref|NP_001086065.1| ribosomal protein S27a [Xenopus laevis]
gi|208022622|ref|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
gi|290543388|ref|NP_001166537.1| ubiquitin-40S ribosomal protein S27a [Cavia porcellus]
gi|294459921|ref|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
gi|302191655|ref|NP_001180515.1| 40S ribosomal protein S27a [Macaca mulatta]
gi|356582340|ref|NP_001239157.1| 40S ribosomal protein S27a [Canis lupus familiaris]
gi|357588518|ref|NP_001239528.1| 40S ribosomal protein S27a [Pan troglodytes]
gi|126303852|ref|XP_001375230.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Monodelphis
domestica]
gi|149640802|ref|XP_001509244.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 1
[Ornithorhynchus anatinus]
gi|149727572|ref|XP_001496841.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Equus
caballus]
gi|291416370|ref|XP_002724420.1| PREDICTED: ubiquitin and ribosomal protein S27a-like [Oryctolagus
cuniculus]
gi|296202145|ref|XP_002748274.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
gi|296212949|ref|XP_002753065.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
gi|296223829|ref|XP_002757792.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
gi|301756480|ref|XP_002914089.1| PREDICTED: hypothetical protein LOC100476697 [Ailuropoda
melanoleuca]
gi|311252615|ref|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa]
gi|311252617|ref|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa]
gi|395829680|ref|XP_003787974.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Otolemur
garnettii]
gi|397521616|ref|XP_003830888.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1 [Pan
paniscus]
gi|397521618|ref|XP_003830889.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 2 [Pan
paniscus]
gi|402890909|ref|XP_003908711.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1 [Papio
anubis]
gi|402890911|ref|XP_003908712.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 2 [Papio
anubis]
gi|402890913|ref|XP_003908713.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 3 [Papio
anubis]
gi|402890915|ref|XP_003908714.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 4 [Papio
anubis]
gi|402891098|ref|XP_003908796.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Papio
anubis]
gi|403260664|ref|XP_003922781.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Saimiri
boliviensis boliviensis]
gi|410035085|ref|XP_003949844.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 1
[Pan troglodytes]
gi|410035087|ref|XP_003949845.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 2
[Pan troglodytes]
gi|410954815|ref|XP_003984057.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Felis catus]
gi|426223661|ref|XP_004005993.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Ovis aries]
gi|426335589|ref|XP_004029299.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1
[Gorilla gorilla gorilla]
gi|426335591|ref|XP_004029300.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 2
[Gorilla gorilla gorilla]
gi|426335593|ref|XP_004029301.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 3
[Gorilla gorilla gorilla]
gi|426335595|ref|XP_004029302.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 4
[Gorilla gorilla gorilla]
gi|302393745|sp|P62979.2|RS27A_HUMAN RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|302393754|sp|P62992.2|RS27A_BOVIN RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|302393755|sp|P62978.2|RS27A_CAVPO RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|70656|pir||UQHUR7 ubiquitin / ribosomal protein S27a, cytosolic [validated] - human
gi|37571|emb|CAA44911.1| ubiquitin [Homo sapiens]
gi|243888|gb|AAB21188.1| ubiquitin carboxyl extension protein [Homo sapiens]
gi|1197091|dbj|BAA11843.1| ubiquitin extention protein [Cavia porcellus]
gi|3885465|gb|AAC77907.1| ubiquitin-S27a fusion protein [Bos taurus]
gi|12655083|gb|AAH01392.1| Ribosomal protein S27a [Homo sapiens]
gi|42542651|gb|AAH66293.1| Ribosomal protein S27a [Homo sapiens]
gi|49257574|gb|AAH74147.1| MGC81889 protein [Xenopus laevis]
gi|67970806|dbj|BAE01745.1| unnamed protein product [Macaca fascicularis]
gi|89268219|emb|CAJ83451.1| ribosomal protein S27a [Xenopus (Silurana) tropicalis]
gi|119620513|gb|EAX00108.1| ribosomal protein S27a, isoform CRA_c [Homo sapiens]
gi|119620515|gb|EAX00110.1| ribosomal protein S27a, isoform CRA_c [Homo sapiens]
gi|134254273|gb|AAI35494.1| hypothetical protein LOC548926 [Xenopus (Silurana) tropicalis]
gi|158454992|gb|AAI02492.2| Ribosomal protein S27a [Bos taurus]
gi|189055074|dbj|BAG38058.1| unnamed protein product [Homo sapiens]
gi|261861184|dbj|BAI47114.1| ribosomal protein S27a [synthetic construct]
gi|296482560|tpg|DAA24675.1| TPA: 40S ribosomal protein S27a [Bos taurus]
gi|312153372|gb|ADQ33198.1| ribosomal protein S27a [synthetic construct]
gi|351702806|gb|EHB05725.1| 40S ribosomal protein S27a [Heterocephalus glaber]
gi|355565699|gb|EHH22128.1| hypothetical protein EGK_05333 [Macaca mulatta]
gi|383410367|gb|AFH28397.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
gi|383410369|gb|AFH28398.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
gi|384948690|gb|AFI37950.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
gi|387540568|gb|AFJ70911.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|264667445|gb|ACY71308.1| ribosomal protein L40 [Chrysomela tremula]
Length = 129
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|378754615|gb|EHY64645.1| ubiquitin extension protein [Nematocida sp. 1 ERTm2]
Length = 132
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV DT+ +VKMKI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVNNNDTIENVKMKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|197632563|gb|ACH71005.1| ribosomal protein S27-3 [Salmo salar]
gi|209731700|gb|ACI66719.1| Ubiquitin [Salmo salar]
gi|223646226|gb|ACN09871.1| Ubiquitin [Salmo salar]
gi|223672073|gb|ACN12218.1| Ubiquitin [Salmo salar]
gi|290561194|gb|ADD37999.1| Ubiquitin [Lepeophtheirus salmonis]
gi|303660799|gb|ADM16009.1| Ubiquitin [Salmo salar]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|29612581|gb|AAH49478.1| Zgc:66168 protein, partial [Danio rerio]
Length = 172
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 17 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 73
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 74 DYNIQKESTLHLVL 87
>gi|1762374|gb|AAB39514.1| polyubiquitin, partial [Gallus gallus]
Length = 71
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|47217408|emb|CAG00768.1| unnamed protein product [Tetraodon nigroviridis]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|209879912|ref|XP_002141396.1| 60S ribosomal protein L40 [Cryptosporidium muris RN66]
gi|209557002|gb|EEA07047.1| 60S ribosomal protein L40, putative [Cryptosporidium muris RN66]
Length = 128
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|18071662|gb|AAL55470.1| ubiquitin/ribosomal protein S27a fusion protein [Branchiostoma
belcheri tsingtauense]
Length = 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|296238592|ref|XP_002764220.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like, partial
[Callithrix jacchus]
Length = 98
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|157361519|gb|ABV44717.1| ubiquitin/ribosomal L40 fusion protein-like protein [Phlebotomus
papatasi]
Length = 128
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|159163685|pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 76
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ G+ L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGRQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|41055516|ref|NP_956796.1| 40S ribosomal protein S27a [Danio rerio]
gi|318884065|ref|NP_001187222.1| ubiquitin-40S ribosomal protein S27a [Ictalurus punctatus]
gi|348536082|ref|XP_003455526.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Oreochromis
niloticus]
gi|410900612|ref|XP_003963790.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Takifugu
rubripes]
gi|302393746|sp|P68200.2|RS27A_ICTPU RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|15294071|gb|AAK95212.1|AF402838_1 40S ribosomal protein S27a [Ictalurus punctatus]
gi|33585739|gb|AAH55524.1| Zgc:66168 [Danio rerio]
gi|124300843|dbj|BAF45917.1| ribosomal protein S27a [Solea senegalensis]
gi|167860808|gb|ACA05172.1| ribosomal protein S27a [Oncorhynchus masou formosanus]
gi|182891012|gb|AAI64449.1| Zgc:66168 protein [Danio rerio]
gi|221219368|gb|ACM08345.1| Ubiquitin [Salmo salar]
gi|225707998|gb|ACO09845.1| Ubiquitin [Osmerus mordax]
gi|229366594|gb|ACQ58277.1| Ubiquitin [Anoplopoma fimbria]
gi|305690487|gb|ADM64585.1| ribosomal protein S27a [Hypophthalmichthys nobilis]
Length = 156
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|148693134|gb|EDL25081.1| mCG67952 [Mus musculus]
Length = 128
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGLTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|92790178|emb|CAI83758.1| Polyubiqutin 5 [Polyplastron multivesiculatum]
Length = 220
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 68 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 124
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 125 DYNIQKESTLHLVL 138
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 144 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 200
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 201 DYNIQKESTLHLVL 214
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSF 70
G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL + + + S
Sbjct: 1 GKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNIQKEST 57
Query: 71 VVIML 75
+ ++L
Sbjct: 58 LHLVL 62
>gi|385302811|gb|EIF46921.1| ubiquitin [Dekkera bruxellensis AWRI1499]
Length = 86
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|223646368|gb|ACN09942.1| Ubiquitin [Salmo salar]
gi|223672215|gb|ACN12289.1| Ubiquitin [Salmo salar]
Length = 128
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|510473|emb|CAA52416.1| polyubiquitin [Artemia franciscana]
Length = 697
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ QG P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
>gi|5523971|gb|AAD44038.1|AF104021_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 177
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 45 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 101
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 102 DYNIQKESTLHLVL 115
>gi|397614491|gb|EJK62831.1| hypothetical protein THAOC_16543 [Thalassiosira oceanica]
Length = 240
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 164 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 220
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 221 DYNIQKESTLHLVL 234
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
++IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 87 FLQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 143
Query: 61 EENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 144 SDYNIQKESTLHLVL 158
>gi|443720203|gb|ELU10002.1| hypothetical protein CAPTEDRAFT_103555 [Capitella teleta]
Length = 179
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+++++TL GT+F++ V P +T+ DVK +I+ ++G P QQ LI++ L+DD +L
Sbjct: 1 MELYIETLTGTAFELRVSPYETIQDVKARIQKLEGI---PMCQQHLIWRSIELEDDYSLR 57
Query: 62 ENKVAENSFVVIMLT 76
+ + + + + ++LT
Sbjct: 58 DYSIHDGASLKLVLT 72
>gi|339262230|ref|XP_003367510.1| putative ubiquitin family protein [Trichinella spiralis]
gi|316959706|gb|EFV47730.1| putative ubiquitin family protein [Trichinella spiralis]
Length = 197
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 50 MQIFVKTLTGKTITLEVEPSDTIQNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 106
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 107 DYNIQKESTLHLVL 120
>gi|225705126|gb|ACO08409.1| Ubiquitin [Oncorhynchus mykiss]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|119624910|gb|EAX04505.1| ubiquitin B, isoform CRA_d [Homo sapiens]
Length = 116
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|427781391|gb|JAA56147.1| Putative ubiquitin/40s ribosomal protein s27a fusion
[Rhipicephalus pulchellus]
Length = 124
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|309265697|ref|XP_003086579.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Mus
musculus]
Length = 155
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|47604954|ref|NP_990406.1| ubiquitin-60S ribosomal protein L40 [Gallus gallus]
gi|2558539|emb|CAA82846.1| ubiquitin-ribosomal protein fusion protein [Gallus gallus]
Length = 128
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|358060846|dbj|GAA93464.1| hypothetical protein E5Q_00105 [Mixia osmundae IAM 14324]
Length = 331
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 173 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 229
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 230 DYNIQKESTLHLVL 243
>gi|327262731|ref|XP_003216177.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Anolis
carolinensis]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|237838205|ref|XP_002368400.1| ubiquitin / ribosomal protein CEP52 fusion protein, putative
[Toxoplasma gondii ME49]
gi|401402053|ref|XP_003881158.1| putative ubiquitin / ribosomal protein CEP52 fusion protein
[Neospora caninum Liverpool]
gi|211966064|gb|EEB01260.1| ubiquitin / ribosomal protein CEP52 fusion protein, putative
[Toxoplasma gondii ME49]
gi|221484327|gb|EEE22623.1| ubiquitin / ribosomal protein CEP52 fusion protein, putative
[Toxoplasma gondii GT1]
gi|221505694|gb|EEE31339.1| ubiquitin / ribosomal protein CEP52 fusion protein, putative
[Toxoplasma gondii VEG]
gi|314998875|gb|ADT65351.1| 10 kDa excretory-secretory antigen [Toxoplasma gondii]
gi|325115570|emb|CBZ51125.1| putative ubiquitin / ribosomal protein CEP52 fusion protein
[Neospora caninum Liverpool]
Length = 129
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|345567561|gb|EGX50491.1| hypothetical protein AOL_s00075g220 [Arthrobotrys oligospora ATCC
24927]
Length = 148
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRST 90
+ + + S + ++L R G G R T
Sbjct: 58 DYNIQKESTLHLVL----RLRGGGKPRCT 82
>gi|302393716|sp|P46575.2|RL40_EIMBO RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; AltName: Full=CEP53; Flags: Precursor
Length = 129
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|296216667|ref|XP_002754639.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
Length = 155
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|164510074|emb|CAJ32641.1| ubiquitin [Hediste diversicolor]
Length = 76
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDARTLS 57
Query: 62 ENKVAENSFVVIMLT 76
+ + + S + ++L+
Sbjct: 58 DYNIQKESTLHLVLS 72
>gi|149287148|gb|ABR23473.1| ubiquitin/40S ribosomal protein S27a [Ornithodoros parkeri]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|600539|gb|AAA57047.1| ubiquitin, partial [synthetic construct]
Length = 157
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|346321308|gb|EGX90907.1| RING and UBP finger domain protein [Cordyceps militaris CM01]
Length = 776
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENS 69
+ + + S
Sbjct: 134 DYNIQKES 141
>gi|296199681|ref|XP_002747252.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|39725569|dbj|BAD04937.1| poryprotein [Bovine viral diarrhea virus 190cp]
Length = 3020
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1946 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 2002
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 2003 DYNIQKESTLHLVL 2016
>gi|345309010|ref|XP_001515679.2| PREDICTED: AN1-type zinc finger and ubiquitin domain-containing
protein 1-like [Ornithorhynchus anatinus]
Length = 627
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M +F++TL GT F+++V P +TV VK KI+ ++G P QQ LI+ L+DD L
Sbjct: 54 MDLFIETLTGTCFELQVSPFETVISVKAKIQRLEG---IPICQQHLIWNNVELEDDYCLN 110
Query: 62 E 62
+
Sbjct: 111 D 111
>gi|332246181|ref|XP_003272229.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Nomascus
leucogenys]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT +VK KI+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTTENVKAKIQDKEG---IPPDQQRLILAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
++ + + S + ++L
Sbjct: 58 DHNIQKESILHLVL 71
>gi|67083981|gb|AAY66925.1| ubiquitin/ribosomal protein S27a fusion protein [Ixodes
scapularis]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|385843206|gb|AFI80900.1| ubiquitin/ribosomal protein S27 precursor [Crassostrea gigas]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|346469917|gb|AEO34803.1| hypothetical protein [Amblyomma maculatum]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|109121596|ref|XP_001118431.1| PREDICTED: ubiquitin-like isoform 1 [Macaca mulatta]
gi|297274949|ref|XP_002800913.1| PREDICTED: ubiquitin-like isoform 2 [Macaca mulatta]
Length = 128
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|452824950|gb|EME31950.1| ubiquitin [Galdieria sulphuraria]
Length = 128
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|399217583|emb|CCF74470.1| unnamed protein product [Babesia microti strain RI]
Length = 282
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|260766535|gb|ACX50289.1| ubiquitin [Scylla paramamosain]
Length = 154
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|240952274|ref|XP_002399366.1| 40S ribosomal protein S27A, putative [Ixodes scapularis]
gi|215490569|gb|EEC00212.1| 40S ribosomal protein S27A, putative [Ixodes scapularis]
Length = 169
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 13 VMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 69
Query: 61 EENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 70 SDYNIQKESTLHLVL 84
>gi|19073994|ref|NP_584600.1| ubiquitin [Encephalitozoon cuniculi GB-M1]
gi|303388387|ref|XP_003072428.1| ubiquitin [Encephalitozoon intestinalis ATCC 50506]
gi|51702116|sp|Q8SWD4.1|UBIQ_ENCCU RecName: Full=Ubiquitin; Flags: Precursor
gi|19068636|emb|CAD25104.1| UBIQUITIN [Encephalitozoon cuniculi GB-M1]
gi|303301568|gb|ADM11068.1| ubiquitin [Encephalitozoon intestinalis ATCC 50506]
gi|449329368|gb|AGE95641.1| ubiquitin [Encephalitozoon cuniculi]
Length = 77
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|293353099|ref|XP_002728156.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Rattus
norvegicus]
gi|392333018|ref|XP_003752767.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Rattus
norvegicus]
Length = 77
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI Q + P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI---QDKESIPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + E S + ++L
Sbjct: 58 DYSIQEESTLHLVL 71
>gi|223646258|gb|ACN09887.1| Ubiquitin [Salmo salar]
gi|223672105|gb|ACN12234.1| Ubiquitin [Salmo salar]
Length = 191
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 171
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 172 DYNIQKESTLHLVL 185
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 8 TLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAE 67
+L G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL + + +
Sbjct: 45 SLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQK 101
Query: 68 NSFVVIML 75
S + ++L
Sbjct: 102 ESTLHLVL 109
>gi|392880568|gb|AFM89116.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFV+TL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVRTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874040|gb|AFM85852.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK +I+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKARIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|209735846|gb|ACI68792.1| Ubiquitin [Salmo salar]
Length = 128
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|403277587|ref|XP_003930438.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Saimiri
boliviensis boliviensis]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|397506460|ref|XP_003823745.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Pan
paniscus]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|157136377|ref|XP_001663729.1| ubiquitin (ribosomal protein L40) [Aedes aegypti]
gi|170033238|ref|XP_001844485.1| ribosomal protein S27a [Culex quinquefasciatus]
gi|56417532|gb|AAV90707.1| ribosomal protein S27a [Aedes albopictus]
gi|108869978|gb|EAT34203.1| AAEL013536-PA [Aedes aegypti]
gi|167873892|gb|EDS37275.1| ribosomal protein S27a [Culex quinquefasciatus]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|28189426|dbj|BAC56381.1| similar to ubiquitin-S27a fusion protein [Bos taurus]
Length = 145
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|426247174|ref|XP_004017361.1| PREDICTED: polyubiquitin-C-like isoform 1 [Ovis aries]
Length = 462
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKVKIQEKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
>gi|72139704|ref|XP_789778.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like
[Strongylocentrotus purpuratus]
Length = 128
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|323449091|gb|EGB04982.1| ubiquitin [Aureococcus anophagefferens]
Length = 78
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|134105065|pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
gi|134105069|pdb|2O6V|H Chain H, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
Length = 76
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ G+ L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGRQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + S + ++L
Sbjct: 58 DYNIQRESTLHLVL 71
>gi|92790176|emb|CAI83757.1| Polyubiqutin 4 [Polyplastron multivesiculatum]
Length = 177
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 25 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 81
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 82 DYNIQKESTLHLVL 95
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 101 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 157
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 158 DYNIQKESTLHLVL 171
>gi|442761305|gb|JAA72811.1| Putative ubiquitin/40s ribosomal protein s27a fusion, partial
[Ixodes ricinus]
Length = 157
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 86
Query: 62 ENKVAEN 68
+ + +N
Sbjct: 87 DYNIQKN 93
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGK 52
+ FVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK
Sbjct: 106 CRFFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGK 153
>gi|123390682|ref|XP_001299927.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880876|gb|EAX86997.1| polyubiquitin [Trichomonas vaginalis G3]
Length = 153
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPT 93
+ + ++S + ++L K TG+ T PT
Sbjct: 58 DYSIQKDSTLHLVLRLRGGMQIFVKTLTGKHITLEVEPT 96
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|403284844|ref|XP_003933762.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 77
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTSKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESILHLVL 71
>gi|197129055|gb|ACH45553.1| putative ubiquitin C variant 2 [Taeniopygia guttata]
gi|197129057|gb|ACH45555.1| putative ubiquitin C variant 2 [Taeniopygia guttata]
Length = 412
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG 51
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ G
Sbjct: 305 MQIFVKTLTGRTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAG 351
>gi|296478557|tpg|DAA20672.1| TPA: ubiquitin B-like [Bos taurus]
Length = 77
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLILAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|442761733|gb|JAA73025.1| Putative ubiquitin/40s ribosomal protein s27a fusion, partial
[Ixodes ricinus]
Length = 86
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 62 ENKVAENS 69
+ + + S
Sbjct: 66 DYNIQKES 73
>gi|171688578|ref|XP_001909229.1| hypothetical protein [Podospora anserina S mat+]
gi|170944251|emb|CAP70361.1| unnamed protein product [Podospora anserina S mat+]
Length = 169
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 42 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 98
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 99 DYNIQKESTLHLVL 112
>gi|20530720|gb|AAM27203.1|AF502248_1 40s ribosomal protein S27a [Epinephelus coioides]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MHIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|306440515|pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 96
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 58
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 59 DYNIQKESTLHLVL 72
>gi|294860858|gb|ADF45325.1| ubiquitin/ribosomal S27 fusion protein 1 [Eriocheir sinensis]
gi|296785438|gb|ADH43625.1| ubiquitin a [Eriocheir sinensis]
gi|320382385|gb|ADW27184.1| ubiquitin/ribosomal S27 fusion protein [Eriocheir sinensis]
Length = 154
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|164510088|emb|CAJ32648.1| ubiquitin [Chorocaris chacei]
Length = 76
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|328899962|gb|AEB54653.1| ubiquitin [Procambarus clarkii]
Length = 154
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|449300809|gb|EMC96821.1| hypothetical protein BAUCODRAFT_490647 [Baudoinia compniacensis
UAMH 10762]
Length = 199
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 66 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 122
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 123 DYNIQKESTLHLVL 136
>gi|90076064|dbj|BAE87712.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +E +P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEAEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 5 FVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGK 52
+VKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK
Sbjct: 157 YVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGK 201
>gi|342884385|gb|EGU84600.1| hypothetical protein FOXB_04788 [Fusarium oxysporum Fo5176]
Length = 890
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 106 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 162
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 163 DYNIQKESTLHLVL 176
>gi|318086966|gb|ADV40075.1| 60S ribosomal protein L40A [Latrodectus hesperus]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|219123892|ref|XP_002182250.1| ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217406211|gb|EEC46151.1| ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 128
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|148708840|gb|EDL40787.1| mCG7881 [Mus musculus]
Length = 128
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLPGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|385076|gb|AAA29064.1| ubiquitin [Echinococcus multilocularis]
Length = 76
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDRRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|303388453|ref|XP_003072461.1| ubiquitin-40S ribosomal protein S31 fusion protein
[Encephalitozoon intestinalis ATCC 50506]
gi|303301601|gb|ADM11101.1| monoubiquitin/carboxy-extension fusion-like protein
[Encephalitozoon intestinalis ATCC 50506]
Length = 152
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPGDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|161661039|gb|ABX75386.1| 60S ribosomal protein L40A [Lycosa singoriensis]
Length = 156
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|123390686|ref|XP_001299928.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880877|gb|EAX86998.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 186
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 110 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 166
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 167 DYSIQKDSTLHLVL 180
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV 65
VKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL++ +
Sbjct: 38 VKTLTGKHITLEVEPTDRIEDVKTKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQDYSI 94
Query: 66 AENSFVVIMLTKN-------KRPTGEGSTRSTAPT 93
++S + ++L K TG+ T PT
Sbjct: 95 QKDSTLHLVLRLRGGMQIFVKTLTGKHITLEVEPT 129
>gi|124514026|ref|XP_001350369.1| 60S ribosomal protein L40/UBI, putative [Plasmodium falciparum
3D7]
gi|23615786|emb|CAD52778.1| 60S ribosomal protein L40/UBI, putative [Plasmodium falciparum
3D7]
Length = 128
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|221122833|ref|XP_002155023.1| PREDICTED: polyubiquitin-C, partial [Hydra magnipapillata]
Length = 530
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G + +EV+P DT+ +VK KI+ +G + QQ LI+ GK L+DD TL
Sbjct: 149 MKIFVKTLTGKTITLEVEPADTIENVKAKIQDKEG---FLPDQQRLIFAGKELEDDRTLS 205
Query: 62 ENKVAENSFVVIML 75
V + S + ++L
Sbjct: 206 YYNVQKESTLHLVL 219
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +F +EV+P +T+ +VK KI +G P QQ LI+ G +L +D TL
Sbjct: 225 MQIFVKTLTGKTFTLEVEPANTIDEVKAKICDKEG---VPPDQQRLIFHG-ILLEDATLS 280
Query: 62 ENKVAENSFVVIML 75
+ V + S + ++L
Sbjct: 281 DCNVQKKSVLQLVL 294
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK +I+ +G + QQ LI+ GK L+DD TL
Sbjct: 300 MQIFVKTLTGKTITLEVELADTIENVKARIQDKKG---FLPDQQRLIFAGKELEDDRTLS 356
Query: 62 ENKVAENSFVVIML 75
V + S + ++L
Sbjct: 357 YYNVQKESTLHLVL 370
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M IFVKTL G + +EV+P DT+ +VK KI +G P QQ L + GK L+++ TL
Sbjct: 376 MNIFVKTLTGKTITLEVEPADTIDNVKAKIHDKEG---VPLDQQSLFFAGKELENERTL 431
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEE 62
+I +KTL +EV+ +T+ DVK I+ +G P QQ L + G +LKD+ TL +
Sbjct: 74 QIHIKTLTSKIISLEVERINTIEDVKENIKVREG---VPPDQQRLFFAGNILKDERTLSD 130
Query: 63 NKVAENSFV 71
+ + S +
Sbjct: 131 YNILKESIL 139
>gi|402232869|gb|AFQ36934.1| ribosomal protein S27-3, partial [Salvelinus fontinalis]
Length = 124
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|71042034|pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
gi|71042035|pdb|1YIW|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
gi|71042036|pdb|1YIW|C Chain C, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
gi|88192952|pdb|2FCQ|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
gi|88192953|pdb|2FCQ|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
Length = 76
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
++IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|197129059|gb|ACH45557.1| putative ubiquitin C variant 4 [Taeniopygia guttata]
Length = 190
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|121543853|gb|ABM55591.1| putative ubiquitin/ribosomal protein S27Ae fusion protein
[Maconellicoccus hirsutus]
Length = 156
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|92790172|emb|CAI83755.1| Polyubiqutin 2 [Polyplastron multivesiculatum]
Length = 346
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 42 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 98
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 99 DYNIQKESTLHLVL 112
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 118 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 174
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 175 DYNIQKESTLHLVL 188
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 194 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 250
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 251 DYNIQKESTLHLVL 264
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 270 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 326
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 327 DYNIQKESTLHLVL 340
>gi|86355646|ref|YP_473314.1| Ubiquitin [Hyphantria cunea nucleopolyhedrovirus]
gi|86198251|dbj|BAE72415.1| Ubiquitin [Hyphantria cunea nucleopolyhedrovirus]
Length = 79
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VE + DTV VK KI +G P QQ LIY GK L+DD T+
Sbjct: 1 MQIFVKTLTGKTITVETESSDTVGQVKQKIADKEG---VPVDQQRLIYAGKQLEDDKTMA 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHMVL 71
>gi|355751323|gb|EHH55578.1| hypothetical protein EGM_04813 [Macaca fascicularis]
Length = 156
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|441630341|ref|XP_004089535.1| PREDICTED: polyubiquitin-C [Nomascus leucogenys]
Length = 590
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 58 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 114
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 115 DYNIQKESTLHLVL 128
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 134 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 190
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 191 DYNIQKESTLHLVL 204
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 210 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 266
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 267 DYNIQKESTLHLVL 280
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 286 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 342
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 343 DYNIQKESTLHLVL 356
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 362 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 418
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 419 DYNIQKESTLHLVL 432
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 438 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 494
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 495 DYNIQKESTLHLVL 508
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 514 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 570
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 571 DYNIQKESTLHLVL 584
>gi|444726621|gb|ELW67145.1| Ubiquitin-60S ribosomal protein L40 [Tupaia chinensis]
Length = 146
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 75
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 76 DYNIQKESTLHLVL 89
>gi|302393761|sp|P68203.2|RS27A_SPOFR RecName: Full=Ubiquitin-40S ribosomal protein S27a; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|18253057|gb|AAL62473.1| ribosomal protein S27A [Spodoptera frugiperda]
Length = 156
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|366984599|gb|AEX09204.1| ribosomal protein L40 [Pandinus cavimanus]
Length = 128
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESPLHLVL 71
>gi|296484338|tpg|DAA26453.1| TPA: ubiquitin and ribosomal protein S27a-like [Bos taurus]
Length = 156
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DTV +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTVENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGCTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNMQKESTLHLVL 71
>gi|226371948|gb|ACO51599.1| Ubiquitin [Rana catesbeiana]
Length = 156
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|123471218|ref|XP_001318810.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479158|ref|XP_001322738.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123501326|ref|XP_001328048.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121901578|gb|EAY06587.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905590|gb|EAY10515.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910986|gb|EAY15825.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPT 93
+ + ++S + ++L K TG+ T PT
Sbjct: 58 DYSIQKDSTLHLVLRLRGGMQIFVKTLTGKHITLEVEPT 96
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|114152964|gb|ABI52648.1| ubiquitin/40S ribosomal protein S27a fusion protein [Argas
monolakensis]
Length = 232
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|395536787|ref|XP_003770393.1| PREDICTED: polyubiquitin-C-like, partial [Sarcophilus harrisii]
Length = 243
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 130 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 186
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 187 DYNIQKESTLHLVL 200
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 7 KTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVA 66
+ L + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL + +
Sbjct: 59 RNLWRLNITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQ 115
Query: 67 ENSFVVIML 75
+ S + ++L
Sbjct: 116 KESTLHLVL 124
>gi|372467011|pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab
Bound To Linear Ubiquitin
gi|372467014|pdb|3U30|D Chain D, Crystal Structure Of A Linear-Specific Ubiquitin Fab
Bound To Linear Ubiquitin
Length = 172
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 77
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 78 DYNIQKESTLHLVL 91
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 153
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 154 DYNIQKESTLHLVL 167
>gi|195164961|ref|XP_002023314.1| GL20619 [Drosophila persimilis]
gi|194105419|gb|EDW27462.1| GL20619 [Drosophila persimilis]
Length = 231
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 154 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 210
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 211 DYNIQKESTLHLVL 224
>gi|154416813|ref|XP_001581428.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121915655|gb|EAY20442.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 147
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPT 93
+ + ++S + ++L K TG+ T PT
Sbjct: 58 DYSIQKDSTLHLVLRLRGGMQIFVKTLTGKHITLEVEPT 96
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 62 ENKVAENSFV 71
+ + ++S +
Sbjct: 134 DYSIQKDSIL 143
>gi|294861424|gb|ADF45309.1| ubiquitin [Notothenia angustata]
Length = 76
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|387916118|gb|AFK11668.1| polyubiquitin-like protein [Callorhinchus milii]
Length = 381
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPLDQQCLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFVGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|390334818|ref|XP_003724023.1| PREDICTED: uncharacterized protein LOC754856 [Strongylocentrotus
purpuratus]
Length = 1673
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 817
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 893
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 969
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 970 DYNIQKESTLHLVL 983
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 989 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1045
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1046 DYNIQKESTLHLVL 1059
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1065 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1121
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1122 DYNIQKESTLHLVL 1135
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1141 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1197
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1198 DYNIQKESTLHLVL 1211
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1217 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1273
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1274 DYNIQKESTLHLVL 1287
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1293 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1349
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1350 DYNIQKESTLHLVL 1363
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1369 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1425
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1426 DYNIQKESTLHLVL 1439
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1445 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1501
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1502 DYNIQKESTLHLVL 1515
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1521 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1577
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1578 DYNIQKESTLHLVL 1591
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1597 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1653
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1654 DYNIQKESTLHLVL 1667
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKV 65
+ +
Sbjct: 58 DYNI 61
>gi|209732720|gb|ACI67229.1| Ubiquitin [Salmo salar]
gi|303662772|gb|ADM16083.1| Ubiquitin [Salmo salar]
Length = 80
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKV 65
+ +
Sbjct: 58 DYNI 61
>gi|429327043|gb|AFZ78850.1| polyubiquitin [Coptotermes formosanus]
Length = 230
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPT 93
+ + ++S + ++L K TG+ T PT
Sbjct: 58 DYSIQKDSTLHLVLRLRGGMQIFVKTLTGKHITLEVEPT 96
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPT 93
+ + ++S + ++L K TG+ T PT
Sbjct: 134 DYSIQKDSTLHLVLRLRGGMQIFVKTLTGKHITLEVEPT 172
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|164510092|emb|CAJ32650.1| ubiquitin [Mytilus edulis]
Length = 228
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D +TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLIFAGKQLEDGSTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D +TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLIFAGKQLEDGSTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ L++ GK L+D +TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLMFAGKQLEDGSTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|226484025|emb|CAX79681.1| ubiquitin C [Schistosoma japonicum]
Length = 229
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G+ P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGT---PPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|385881402|gb|AFI98422.1| polyubiquitin-B, partial [Antricola delacruzi]
Length = 156
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 80 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 136
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 137 DYNIQKESTLHLVL 150
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKP-EDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 3 MQIFVKTLTGKTITLEVEPGSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 59
Query: 61 EENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 60 SDYNIQKESTLHLVL 74
>gi|294861422|gb|ADF45308.1| ubiquitin [Pagothenia borchgrevinki]
Length = 76
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYDIQKESTLHLVL 71
>gi|291226770|ref|XP_002733357.1| PREDICTED: ubiquitin and ribosomal protein S27a-like
[Saccoglossus kowalevskii]
Length = 157
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|429964160|gb|ELA46158.1| polyubiquitin [Vavraia culicis 'floridensis']
Length = 78
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D +L
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTISNVKNKIKDKEG---IPPDQQRLIFAGKQLEDGRSLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|159162145|pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural
Specificity
Length = 76
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++FVKTL G + VE++P DTV ++K KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNLQKESTIHLVL 71
>gi|213511910|ref|NP_001133210.1| ribosomal protein S27-3 [Salmo salar]
gi|209737170|gb|ACI69454.1| Ubiquitin [Salmo salar]
Length = 156
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKAITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|350537977|ref|NP_001232075.1| putative ubiquitin C variant 2 [Taeniopygia guttata]
gi|197129056|gb|ACH45554.1| putative ubiquitin C variant 2 [Taeniopygia guttata]
Length = 248
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|123445177|ref|XP_001311351.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121893157|gb|EAX98421.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 229
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPT 93
+ + ++S + ++L K TG+ T PT
Sbjct: 58 DYSIQKDSTLHLVLRLRGGMQIFVKTLTGKHITLEVEPT 96
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPT 93
+ + ++S + ++L K TG+ T PT
Sbjct: 134 DYSIQKDSTLHLVLRLRGGMQIFVKTLTGKHITLEVEPT 172
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.126 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,024,965,019
Number of Sequences: 23463169
Number of extensions: 244338097
Number of successful extensions: 3223260
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6268
Number of HSP's successfully gapped in prelim test: 19125
Number of HSP's that attempted gapping in prelim test: 2820720
Number of HSP's gapped (non-prelim): 283157
length of query: 300
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 159
effective length of database: 9,050,888,538
effective search space: 1439091277542
effective search space used: 1439091277542
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 76 (33.9 bits)