BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022228
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana
GN=RAD23-3 PE=2 SV=2
Length = 419
Score = 341 bits (875), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 194/329 (58%), Positives = 227/329 (68%), Gaps = 39/329 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS--- 118
ENKVAENSF+VIM+ K+K + S+ S ++A S P + P+ +PQT +S
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQA--KSIPPSTSQPSISPQTPASVSAPV 118
Query: 119 -----------------------TEPTPAPTPAPASASVS-----SVSATSESGVYGHAA 150
T TP P P PA+ S S S S+ VYG AA
Sbjct: 119 APAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAA 178
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
SNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PV
Sbjct: 179 SNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPV 238
Query: 211 ARAPGN-GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
AR P + GQ AN P Q QPA +SGPNANPLDLFPQGLP+VG G GAG+LDFLR
Sbjct: 239 ARPPASAGQPANPPAQT---QQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLR 294
Query: 270 NSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
NS QFQ LRAMVQANPQ+ P + G +
Sbjct: 295 NSQQFQALRAMVQANPQVLQPMLQELGKQ 323
>sp|Q84L30|RD23D_ARATH Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana
GN=RAD23-4 PE=2 SV=2
Length = 378
Score = 312 bits (799), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/299 (59%), Positives = 217/299 (72%), Gaps = 16/299 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPIST 119
EN V ENSF+VIML+K K P+G STA AP ++ P ATP +AP +VP+
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSG----ASTASAPAPSATQPQTVATPQVSAPTASVPV-- 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT A+A+ + +A+ ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTV
Sbjct: 114 -----PTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTV 168
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A +P PQ + G
Sbjct: 169 VRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGG 228
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
PNANPL+LFPQG+P AGAG+LDFLRNS QFQ LRAMVQANPQ+ P + G +
Sbjct: 229 PNANPLNLFPQGMPAA-DAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQ 286
>sp|Q40742|RAD23_ORYSJ Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica
GN=RAD23 PE=1 SV=2
Length = 392
Score = 299 bits (765), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 173/308 (56%), Positives = 213/308 (69%), Gaps = 25/308 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRST-APTKAPQSSAP-------TPAATPATAPQT 113
ENKV ENSF+VIML + G+GS+ S A +KAP + AP PA+ AP T
Sbjct: 61 ENKVLENSFLVIMLRQ-----GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPAT 115
Query: 114 AVPIS-TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGG 172
VP++ + PTP T +PA A V+ +SE+ YG A SNLVAG+NLE IQ IL+MGGG
Sbjct: 116 TVPVTVSAPTPTATASPAPA----VAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGG 171
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
WDRD V+ AL AA+NNPERAVEYLYSG+PEQ ++ PV P + Q AN PTQ Q TQP
Sbjct: 172 IWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PV--PPPSIQPAN-PTQASQATQP 227
Query: 233 A--PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-P 289
A + SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+ P
Sbjct: 228 AAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQP 287
Query: 290 CFKSWGNK 297
+ G +
Sbjct: 288 LLQELGKQ 295
>sp|Q84L33|RD23A_ARATH Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana
GN=RAD23-1 PE=2 SV=3
Length = 371
Score = 254 bits (650), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 145/301 (48%), Positives = 192/301 (63%), Gaps = 29/301 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G + A + S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKS----GGSAGQASVQTSSVSQPVSATTSSTKP--AAPSTTQS 114
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 115 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 169
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 170 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 217
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGN 296
GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+ P + G
Sbjct: 218 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGK 276
Query: 297 K 297
+
Sbjct: 277 Q 277
>sp|Q84L32|RD23B_ARATH Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana
GN=RAD23-2 PE=2 SV=2
Length = 368
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/299 (45%), Positives = 182/299 (60%), Gaps = 28/299 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K + G + + + + + T A P+T AVP S
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 120
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P T++S YG AAS LV+G+++E +QQI++MGGG+WD++TV R
Sbjct: 121 PVQEQP------------TAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTR 168
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAV+YLYSGIPE + P G G + T P P S GPN
Sbjct: 169 ALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGR-------ELTAPPP--SGGPN 218
Query: 242 ANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLF-PCFKSWGNK 297
++PLDLFPQ + S AAG G+L+FLR + QFQ LR+MV +NPQ+ P + G +
Sbjct: 219 SSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQ 274
>sp|P54727|RD23B_HUMAN UV excision repair protein RAD23 homolog B OS=Homo sapiens
GN=RAD23B PE=1 SV=1
Length = 409
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 170/322 (52%), Gaps = 52/322 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLFPCF 291
N PQFQ +R ++Q NP L P
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPAL 302
>sp|P54728|RD23B_MOUSE UV excision repair protein RAD23 homolog B OS=Mus musculus
GN=Rad23b PE=1 SV=2
Length = 416
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 159/328 (48%), Gaps = 64/328 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP------------------ 103
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 104 -----AATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLFPCF 291
L+FLRN PQFQ +R ++Q NP L P
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPAL 302
>sp|Q4KMA2|RD23B_RAT UV excision repair protein RAD23 homolog B OS=Rattus norvegicus
GN=Rad23b PE=1 SV=1
Length = 415
Score = 154 bits (389), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 158/325 (48%), Gaps = 58/325 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTG----------------------------EGSTRSTAPT 93
E K+ E +FVV+M+TK K T T + APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT 120
Query: 94 KAPQSSAPT-------PAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVY 146
P S+ P PA T AT P+ + +PAPA S+ +S S ++
Sbjct: 121 STPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPAD---STPGDSSRSNLF 177
Query: 147 GHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E
Sbjct: 178 EDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRE 234
Query: 207 VQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLD 266
Q V P P V++ P + + + +G L+
Sbjct: 235 SQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGHPLE 277
Query: 267 FLRNSPQFQVLRAMVQANPQLFPCF 291
FLRN PQFQ +R ++Q NP L P
Sbjct: 278 FLRNQPQFQQMRQIIQQNPSLLPAL 302
>sp|Q29RK4|RD23B_BOVIN UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B
PE=2 SV=1
Length = 408
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 160/324 (49%), Gaps = 57/324 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNK-----RPTGEGSTRSTAPTKAPQSS----------------- 99
E K+ E +FVV+M+TK K P + S A T S+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPT 120
Query: 100 --------APTPAAT---PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
APT A++ PA+A + P + P P +++ S+ +S S ++
Sbjct: 121 PTPVSVTPAPTTASSEPAPASAAKQEKP-AERPVETPVATTPTSTDSTSGDSSRSNLFED 179
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLDF 267
V P P S+G P ++ + ++G L+F
Sbjct: 237 AV-------------------VDPPPAASTGAPQSSVAAAAATTTATTTTTSSGGHPLEF 277
Query: 268 LRNSPQFQVLRAMVQANPQLFPCF 291
LRN PQFQ +R ++Q NP L P
Sbjct: 278 LRNQPQFQQMRQIIQQNPSLLPAL 301
>sp|P54725|RD23A_HUMAN UV excision repair protein RAD23 homolog A OS=Homo sapiens
GN=RAD23A PE=1 SV=1
Length = 363
Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 50/289 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>sp|P54726|RD23A_MOUSE UV excision repair protein RAD23 homolog A OS=Mus musculus
GN=Rad23a PE=1 SV=2
Length = 363
Score = 141 bits (355), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 147/290 (50%), Gaps = 52/290 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVS---------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S ++ SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
+ AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 224 ----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
>sp|A3KMV2|RD23A_BOVIN UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A
PE=2 SV=1
Length = 362
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 143/288 (49%), Gaps = 49/288 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA-------TPATAPQTAVP 116
++ E +FVV+M+TK K G +PT P+SS P+A P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSAPASGMSHPPPTAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S + AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESAPTTSPESVSGSVPSSGSGGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GIP E P +G S QP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQP---- 222
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
S AG L+FLR+ PQFQ +R ++Q N
Sbjct: 223 --------------------STEAGENPLEFLRDQPQFQNMRQVIQQN 250
>sp|O74803|RHP23_SCHPO UV excision repair protein rhp23 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rhp23 PE=1 SV=1
Length = 368
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 145/294 (49%), Gaps = 31/294 (10%)
Query: 2 MKIFVKTLKGTSFDV-EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M + K L+ F + +V + + ++K KI+T Q Y +Q LIY G++L DD T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQN---YEVERQKLIYSGRILADDKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + E F+V M++ RP ST +A + AP A P AP + V ST
Sbjct: 58 GEYNIKEQDFIVCMVS---RPKTSTSTPKSAASPAPNPPASVPEK-KVEAPSSTVAESTS 113
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T T A A+ S +ATSE+ + A+ L G A++ +++MG ++R V
Sbjct: 114 TTQ--TVAAAAPSNPDTTATSEAPI---DANTLAVGAQRNVAVENMVEMG---YERSEVE 165
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+NNP+RAVEYL +GIPE + + A ++ P TS+G
Sbjct: 166 RAMRAAFNNPDRAVEYLLTGIPEDILNRQREESAAALAAQQQQSEALAP------TSTG- 218
Query: 241 NANPLDLFPQGLPDVG------SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLF 288
P +LF Q S G L FLR+ PQFQ LR +VQ NPQ+
Sbjct: 219 --QPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQML 270
>sp|P32628|RAD23_YEAST UV excision repair protein RAD23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1
Length = 398
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 18/205 (8%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTERTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPE 203
V RALRAA+NNP+RAVEYL GIPE
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPE 189
>sp|Q54LV1|RAD23_DICDI UV excision repair protein RAD23 homolog OS=Dictyostelium
discoideum GN=rcbA PE=1 SV=1
Length = 342
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 56/141 (39%), Gaps = 45/141 (31%)
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG-IPEQAEVQ 208
+S+ G LE I+ I DMG + RD V+RALR +NN ERA+EYL SG IP
Sbjct: 154 SSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSGNIP------ 204
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
AAN P + NP + L
Sbjct: 205 ----------AANDPEDEEEMEGGGGSGD-----NPFEA--------------------L 229
Query: 269 RNSPQFQVLRAMVQANPQLFP 289
RN P F +LR + NP + P
Sbjct: 230 RNHPHFNLLREAISKNPSIIP 250
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +K + + EV + TV ++K I + Q LIY GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 62 ENKVAENSFVVIMLTK 77
+ ++ F+V+M+ K
Sbjct: 58 SYNITDSGFIVMMIKK 73
>sp|Q05120|UBIL_NPVOP Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=V-UBI PE=3 SV=1
Length = 93
Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VE +P DTV VK KI +G P QQ LIY GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEG---VPVDQQRLIYAGKQLEDAQTLA 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHMVL 71
>sp|P62975|UBIQ_RABIT Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1
Length = 76
Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68197|UBIQ_CERCA Ubiquitin OS=Ceratitis capitata PE=1 SV=1
Length = 76
Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|Q865C5|UBIQ_CAMDR Ubiquitin OS=Camelus dromedarius PE=3 SV=2
Length = 76
Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62976|UBIQP_CRIGR Polyubiquitin OS=Cricetulus griseus PE=2 SV=2
Length = 658
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ QG P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
>sp|P0C276|RL40_SHEEP Ubiquitin-60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=2
SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62986|RL40_RAT Ubiquitin-60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52
PE=1 SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P0C275|RL40_PONPY Ubiquitin-60S ribosomal protein L40 OS=Pongo pygmaeus GN=UBA52
PE=2 SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P63053|RL40_PIG Ubiquitin-60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=1
SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68205|RL40_OPHHA Ubiquitin-60S ribosomal protein L40 OS=Ophiophagus hannah PE=2
SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62984|RL40_MOUSE Ubiquitin-60S ribosomal protein L40 OS=Mus musculus GN=Uba52 PE=1
SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P0C273|RL40_MACFA Ubiquitin-60S ribosomal protein L40 OS=Macaca fascicularis
GN=UBA52 PE=2 SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62987|RL40_HUMAN Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1
SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P63052|RL40_FELCA Ubiquitin-60S ribosomal protein L40 OS=Felis catus GN=UBA52 PE=2
SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P63050|RL40_CANFA Ubiquitin-60S ribosomal protein L40 OS=Canis familiaris GN=UBA52
PE=2 SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P63048|RL40_BOVIN Ubiquitin-60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=1
SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P18101|RL40_DROME Ubiquitin-60S ribosomal protein L40 OS=Drosophila melanogaster
GN=RpL40 PE=1 SV=2
Length = 128
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P15357|RS27A_DROME Ubiquitin-40S ribosomal protein S27a OS=Drosophila melanogaster
GN=RpS27A PE=1 SV=2
Length = 156
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P79781|RS27A_CHICK Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A
PE=2 SV=3
Length = 156
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62982|RS27A_RAT Ubiquitin-40S ribosomal protein S27a OS=Rattus norvegicus
GN=Rps27a PE=1 SV=2
Length = 156
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62983|RS27A_MOUSE Ubiquitin-40S ribosomal protein S27a OS=Mus musculus GN=Rps27a
PE=1 SV=2
Length = 156
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62979|RS27A_HUMAN Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A
PE=1 SV=2
Length = 156
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62978|RS27A_CAVPO Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A
PE=1 SV=2
Length = 156
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62992|RS27A_BOVIN Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1
SV=2
Length = 156
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68200|RS27A_ICTPU Ubiquitin-40S ribosomal protein S27a OS=Ictalurus punctatus
GN=rps27a PE=2 SV=2
Length = 156
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P46575|RL40_EIMBO Ubiquitin-60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=2
Length = 129
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|Q8SWD4|UBIQ_ENCCU Ubiquitin OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU02_0740i PE=1 SV=1
Length = 77
Score = 55.1 bits (131), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68203|RS27A_SPOFR Ubiquitin-40S ribosomal protein S27a OS=Spodoptera frugiperda
PE=2 SV=2
Length = 156
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P29504|RS27A_MANSE Ubiquitin-40S ribosomal protein S27a OS=Manduca sexta PE=2 SV=2
Length = 155
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68202|RS27A_PLUXY Ubiquitin-40S ribosomal protein S27a OS=Plutella xylostella PE=2
SV=2
Length = 155
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62972|UBIQP_XENLA Polyubiquitin (Fragment) OS=Xenopus laevis PE=1 SV=2
Length = 167
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 16 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 72
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 73 DYNIQKESTLHLVL 86
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 92 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 148
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 149 DYNIQKESTLHLVL 162
>sp|P0CG60|UBB_PONPY Polyubiquitin-B OS=Pongo pygmaeus GN=UBB PE=3 SV=1
Length = 229
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>sp|P0CG65|UBB_PANTR Polyubiquitin-B OS=Pan troglodytes GN=UBB PE=3 SV=1
Length = 229
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>sp|P0CG47|UBB_HUMAN Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1
Length = 229
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>sp|P0CG67|UBB_GORGO Polyubiquitin-B OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=1
Length = 229
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,878,131
Number of Sequences: 539616
Number of extensions: 5534218
Number of successful extensions: 63217
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 1408
Number of HSP's that attempted gapping in prelim test: 41833
Number of HSP's gapped (non-prelim): 15358
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)