Query 022228
Match_columns 300
No_of_seqs 332 out of 1374
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00601 rad23 UV excision re 100.0 5.1E-62 1.1E-66 468.4 27.8 271 2-295 1-278 (378)
2 KOG0011 Nucleotide excision re 100.0 1.5E-59 3.2E-64 433.7 21.4 246 2-295 1-246 (340)
3 cd01807 GDX_N ubiquitin-like d 99.8 3.7E-19 8.1E-24 133.9 9.1 73 2-77 1-73 (74)
4 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 6.1E-19 1.3E-23 132.9 9.2 72 1-75 1-72 (73)
5 cd01805 RAD23_N Ubiquitin-like 99.8 1.6E-18 3.5E-23 130.9 9.8 75 2-79 1-77 (77)
6 cd01797 NIRF_N amino-terminal 99.8 1.8E-18 4E-23 131.9 8.9 74 2-78 1-76 (78)
7 cd01793 Fubi Fubi ubiquitin-li 99.7 6.1E-18 1.3E-22 127.4 9.1 73 2-79 1-73 (74)
8 PTZ00044 ubiquitin; Provisiona 99.7 9.1E-18 2E-22 126.5 9.4 74 2-78 1-74 (76)
9 cd01802 AN1_N ubiquitin-like d 99.7 1.5E-17 3.3E-22 133.3 10.1 75 2-79 28-102 (103)
10 cd01804 midnolin_N Ubiquitin-l 99.7 1.6E-17 3.5E-22 126.6 9.0 74 1-78 1-74 (78)
11 cd01806 Nedd8 Nebb8-like ubiq 99.7 3.5E-17 7.5E-22 122.8 9.8 74 2-78 1-74 (76)
12 cd01792 ISG15_repeat1 ISG15 ub 99.7 2E-17 4.4E-22 126.4 8.6 74 2-78 3-78 (80)
13 cd01810 ISG15_repeat2 ISG15 ub 99.7 2.7E-17 5.8E-22 123.9 9.0 72 4-78 1-72 (74)
14 cd01803 Ubiquitin Ubiquitin. U 99.7 4.6E-17 1E-21 122.1 9.3 74 2-78 1-74 (76)
15 cd01794 DC_UbP_C dendritic cel 99.7 3.1E-17 6.8E-22 122.6 8.2 70 4-76 1-70 (70)
16 cd01798 parkin_N amino-termina 99.7 3.9E-17 8.4E-22 121.5 8.3 70 4-76 1-70 (70)
17 cd01809 Scythe_N Ubiquitin-lik 99.7 6.2E-17 1.4E-21 120.2 9.1 72 2-76 1-72 (72)
18 cd01790 Herp_N Homocysteine-re 99.7 7.7E-17 1.7E-21 123.0 8.6 73 2-75 2-78 (79)
19 cd01808 hPLIC_N Ubiquitin-like 99.7 1.1E-16 2.4E-21 119.5 8.6 71 2-76 1-71 (71)
20 PF00240 ubiquitin: Ubiquitin 99.7 1.3E-16 2.9E-21 117.8 8.1 69 7-78 1-69 (69)
21 cd01813 UBP_N UBP ubiquitin pr 99.7 2.3E-16 5.1E-21 119.1 8.0 70 2-75 1-73 (74)
22 cd01796 DDI1_N DNA damage indu 99.6 6.5E-16 1.4E-20 115.6 7.8 68 4-74 1-70 (71)
23 cd01812 BAG1_N Ubiquitin-like 99.6 2E-15 4.4E-20 111.9 7.8 70 2-75 1-70 (71)
24 KOG0005 Ubiquitin-like protein 99.6 7.3E-16 1.6E-20 109.6 4.4 70 2-74 1-70 (70)
25 cd01800 SF3a120_C Ubiquitin-li 99.6 4.3E-15 9.3E-20 112.5 8.7 68 9-79 5-72 (76)
26 KOG0010 Ubiquitin-like protein 99.6 1.3E-14 2.9E-19 141.5 10.4 77 2-82 16-92 (493)
27 cd01763 Sumo Small ubiquitin-r 99.5 8.9E-14 1.9E-18 108.1 10.5 75 2-79 12-86 (87)
28 smart00213 UBQ Ubiquitin homol 99.5 6.3E-14 1.4E-18 101.0 7.5 64 2-69 1-64 (64)
29 KOG0003 Ubiquitin/60s ribosoma 99.5 2.8E-15 6E-20 118.7 -0.6 76 2-80 1-76 (128)
30 KOG0004 Ubiquitin/40S ribosoma 99.5 4E-14 8.6E-19 119.3 4.4 78 2-82 1-78 (156)
31 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 1E-13 2.2E-18 104.6 5.4 55 20-75 19-74 (75)
32 cd01814 NTGP5 Ubiquitin-like N 99.4 6.4E-13 1.4E-17 107.0 7.5 78 2-79 5-93 (113)
33 cd01769 UBL Ubiquitin-like dom 99.4 2.5E-12 5.4E-17 93.8 8.1 68 5-75 1-68 (69)
34 cd01799 Hoil1_N Ubiquitin-like 99.4 3E-12 6.6E-17 96.9 8.3 66 6-75 7-74 (75)
35 PF11976 Rad60-SLD: Ubiquitin- 99.3 1.2E-11 2.7E-16 92.0 8.6 71 2-75 1-72 (72)
36 PF00627 UBA: UBA/TS-N domain; 99.1 1E-10 2.3E-15 76.6 5.2 36 159-197 2-37 (37)
37 cd01795 USP48_C USP ubiquitin- 99.1 3.1E-10 6.6E-15 89.4 7.2 62 13-77 16-78 (107)
38 PF13881 Rad60-SLD_2: Ubiquiti 99.0 4.2E-09 9E-14 85.6 11.1 76 2-77 3-89 (111)
39 PF09280 XPC-binding: XPC-bind 99.0 1.9E-10 4E-15 83.1 2.5 30 265-294 1-30 (59)
40 KOG4248 Ubiquitin-like protein 99.0 5.1E-10 1.1E-14 117.0 6.7 72 2-77 3-74 (1143)
41 cd01789 Alp11_N Ubiquitin-like 99.0 2.9E-09 6.4E-14 82.2 9.2 72 2-76 2-81 (84)
42 KOG0001 Ubiquitin and ubiquiti 99.0 7.5E-09 1.6E-13 74.9 9.6 72 4-78 2-73 (75)
43 cd00194 UBA Ubiquitin Associat 98.9 1.8E-09 3.9E-14 70.7 5.0 37 160-199 2-38 (38)
44 smart00165 UBA Ubiquitin assoc 98.9 2.3E-09 5E-14 69.9 4.6 36 160-198 2-37 (37)
45 PLN02560 enoyl-CoA reductase 98.9 6.2E-09 1.3E-13 98.6 8.2 70 2-73 1-80 (308)
46 PF14560 Ubiquitin_2: Ubiquiti 98.9 1E-08 2.2E-13 79.5 7.8 74 1-77 1-84 (87)
47 cd01788 ElonginB Ubiquitin-lik 98.8 3.4E-08 7.5E-13 79.6 8.1 71 3-77 4-81 (119)
48 cd01801 Tsc13_N Ubiquitin-like 98.7 4.1E-08 8.9E-13 74.4 6.7 69 3-73 2-74 (77)
49 cd00196 UBQ Ubiquitin-like pro 98.6 4.4E-07 9.5E-12 62.1 8.0 67 6-75 2-68 (69)
50 PF11543 UN_NPL4: Nuclear pore 98.5 1.9E-07 4.1E-12 71.6 5.4 68 2-73 5-77 (80)
51 cd01811 OASL_repeat1 2'-5' oli 98.4 1.2E-06 2.6E-11 65.5 8.0 72 2-77 1-77 (80)
52 KOG3493 Ubiquitin-like protein 98.4 1.5E-07 3.1E-12 68.5 1.8 71 1-74 1-71 (73)
53 KOG1872 Ubiquitin-specific pro 98.3 2.1E-06 4.6E-11 84.1 7.4 72 3-78 5-77 (473)
54 KOG0006 E3 ubiquitin-protein l 98.2 2.2E-06 4.8E-11 80.3 5.5 73 2-77 1-76 (446)
55 KOG1769 Ubiquitin-like protein 98.1 3.3E-05 7E-10 61.1 9.1 73 2-77 21-93 (99)
56 KOG4495 RNA polymerase II tran 97.7 5.6E-05 1.2E-09 59.3 4.8 61 2-66 3-65 (110)
57 PF10302 DUF2407: DUF2407 ubiq 97.6 0.0002 4.4E-09 56.8 6.2 59 4-63 3-64 (97)
58 PF08817 YukD: WXG100 protein 97.5 0.00028 6.1E-09 53.6 6.1 72 2-73 3-78 (79)
59 PF00789 UBX: UBX domain; Int 97.5 0.001 2.2E-08 50.5 8.8 69 2-73 7-80 (82)
60 COG5417 Uncharacterized small 97.5 0.00071 1.5E-08 50.8 7.4 72 2-73 5-80 (81)
61 PF02845 CUE: CUE domain; Int 97.5 0.00022 4.7E-09 47.7 4.3 39 159-200 1-41 (42)
62 KOG0944 Ubiquitin-specific pro 97.4 0.00011 2.3E-09 75.0 3.2 43 157-202 633-675 (763)
63 smart00166 UBX Domain present 97.3 0.0016 3.5E-08 49.4 8.6 69 2-73 5-78 (80)
64 cd01767 UBX UBX (ubiquitin reg 97.2 0.0037 8E-08 47.0 8.8 67 2-73 3-74 (77)
65 cd01772 SAKS1_UBX SAKS1-like U 97.1 0.0053 1.2E-07 46.7 8.8 68 2-73 5-77 (79)
66 cd01770 p47_UBX p47-like ubiqu 97.0 0.0051 1.1E-07 46.9 8.6 65 2-68 5-72 (79)
67 KOG4583 Membrane-associated ER 97.0 0.00017 3.6E-09 68.3 0.3 75 2-77 10-88 (391)
68 COG5227 SMT3 Ubiquitin-like pr 96.9 0.0042 9.2E-08 48.4 6.7 70 3-75 26-95 (103)
69 KOG0013 Uncharacterized conser 96.8 0.0025 5.4E-08 56.9 5.7 65 10-77 155-221 (231)
70 cd01773 Faf1_like1_UBX Faf1 ik 96.8 0.013 2.8E-07 45.1 8.9 70 2-75 6-80 (82)
71 KOG1639 Steroid reductase requ 96.8 0.0027 5.7E-08 58.2 5.9 70 2-73 1-76 (297)
72 PF11470 TUG-UBL1: GLUT4 regul 96.8 0.0073 1.6E-07 44.5 7.0 63 8-73 3-65 (65)
73 TIGR00601 rad23 UV excision re 96.7 0.0021 4.5E-08 62.8 4.7 38 159-199 337-374 (378)
74 KOG0418 Ubiquitin-protein liga 96.7 0.0024 5.2E-08 56.0 4.5 47 151-200 154-200 (200)
75 cd01774 Faf1_like2_UBX Faf1 ik 96.6 0.021 4.6E-07 44.1 9.1 68 2-73 5-82 (85)
76 smart00546 CUE Domain that may 96.6 0.0062 1.3E-07 40.8 5.2 39 159-200 2-42 (43)
77 KOG3206 Alpha-tubulin folding 96.4 0.0099 2.1E-07 53.1 6.9 73 1-76 1-81 (234)
78 cd01771 Faf1_UBX Faf1 UBX doma 96.4 0.032 6.9E-07 42.7 8.9 69 2-74 5-78 (80)
79 PF13019 Telomere_Sde2: Telome 96.2 0.039 8.3E-07 47.7 9.1 75 2-79 1-87 (162)
80 PLN02799 Molybdopterin synthas 95.9 0.034 7.3E-07 42.1 6.8 67 1-74 1-76 (82)
81 PRK08364 sulfur carrier protei 95.3 0.14 3E-06 37.9 7.9 59 1-74 4-64 (70)
82 PF09288 UBA_3: Fungal ubiquit 95.1 0.024 5.2E-07 40.3 3.1 23 160-185 10-32 (55)
83 KOG0011 Nucleotide excision re 95.0 0.034 7.3E-07 52.9 4.6 38 160-200 299-336 (340)
84 KOG0010 Ubiquitin-like protein 94.8 0.04 8.6E-07 55.0 4.9 41 157-200 452-493 (493)
85 PF11626 Rap1_C: TRF2-interact 94.6 0.061 1.3E-06 41.6 4.6 36 163-201 1-36 (87)
86 PF15044 CLU_N: Mitochondrial 94.6 0.069 1.5E-06 40.4 4.7 56 18-75 1-57 (76)
87 PF14453 ThiS-like: ThiS-like 94.5 0.1 2.3E-06 37.4 5.1 56 2-76 1-56 (57)
88 PF09379 FERM_N: FERM N-termin 94.2 0.29 6.4E-06 36.4 7.5 68 6-75 1-74 (80)
89 PRK06437 hypothetical protein; 94.1 0.32 7E-06 35.7 7.3 54 10-75 9-62 (67)
90 KOG2561 Adaptor protein NUB1, 93.6 0.075 1.6E-06 52.6 4.0 59 15-76 53-111 (568)
91 PF14555 UBA_4: UBA-like domai 93.2 0.26 5.6E-06 32.9 5.0 37 160-199 1-38 (43)
92 KOG0012 DNA damage inducible p 93.1 0.12 2.5E-06 49.9 4.3 69 2-73 1-73 (380)
93 PF06972 DUF1296: Protein of u 93.1 0.28 6E-06 35.4 5.1 41 159-200 5-45 (60)
94 PF07499 RuvA_C: RuvA, C-termi 92.7 0.14 3E-06 35.0 3.2 37 159-198 3-39 (47)
95 cd06406 PB1_P67 A PB1 domain i 92.7 0.59 1.3E-05 35.8 6.8 43 2-51 5-47 (80)
96 cd00754 MoaD Ubiquitin domain 92.4 0.65 1.4E-05 34.4 6.9 57 13-74 17-74 (80)
97 smart00727 STI1 Heat shock cha 92.4 0.11 2.3E-06 34.3 2.2 28 266-294 6-33 (41)
98 PRK06488 sulfur carrier protei 91.8 0.66 1.4E-05 33.5 6.0 60 2-75 1-60 (65)
99 KOG2561 Adaptor protein NUB1, 91.5 0.24 5.2E-06 49.2 4.4 42 160-204 430-471 (568)
100 cd06409 PB1_MUG70 The MUG70 pr 91.0 0.71 1.5E-05 35.9 5.8 47 3-49 2-48 (86)
101 COG5207 UBP14 Isopeptidase T [ 90.5 0.33 7.1E-06 49.0 4.3 40 160-202 559-599 (749)
102 PF14836 Ubiquitin_3: Ubiquiti 89.5 2.8 6.1E-05 32.7 7.9 62 12-77 14-81 (88)
103 smart00295 B41 Band 4.1 homolo 89.4 4 8.7E-05 35.2 10.0 71 2-75 4-82 (207)
104 TIGR01682 moaD molybdopterin c 89.3 2.3 5E-05 31.9 7.3 57 11-74 14-74 (80)
105 PF12754 Blt1: Cell-cycle cont 89.1 0.12 2.5E-06 49.1 0.0 62 2-66 79-160 (309)
106 KOG0944 Ubiquitin-specific pro 88.9 0.58 1.3E-05 48.6 4.7 41 160-203 572-613 (763)
107 COG5207 UBP14 Isopeptidase T [ 88.8 0.15 3.3E-06 51.4 0.5 38 159-199 621-658 (749)
108 PF14451 Ub-Mut7C: Mut7-C ubiq 88.8 2.9 6.4E-05 32.0 7.5 53 11-75 22-75 (81)
109 PRK06083 sulfur carrier protei 88.6 1.8 4E-05 33.3 6.3 61 2-75 19-79 (84)
110 PF02597 ThiS: ThiS family; I 88.4 1.1 2.3E-05 32.9 4.9 60 13-75 13-72 (77)
111 PRK05863 sulfur carrier protei 87.9 1.6 3.5E-05 31.6 5.4 60 2-75 1-60 (65)
112 cd06407 PB1_NLP A PB1 domain i 87.6 3.2 7E-05 31.8 7.2 71 2-76 1-81 (82)
113 PF10209 DUF2340: Uncharacteri 87.5 2.6 5.7E-05 34.8 6.9 71 6-76 6-108 (122)
114 TIGR01687 moaD_arch MoaD famil 87.4 3 6.6E-05 31.7 7.0 59 12-74 16-82 (88)
115 PF10790 DUF2604: Protein of U 87.1 3.2 6.8E-05 30.6 6.4 67 10-76 4-71 (76)
116 PF11620 GABP-alpha: GA-bindin 86.9 1.8 4E-05 33.5 5.3 61 14-77 5-65 (88)
117 smart00666 PB1 PB1 domain. Pho 86.5 3.2 6.9E-05 30.8 6.6 46 2-51 2-47 (81)
118 cd01760 RBD Ubiquitin-like dom 86.3 2.4 5.3E-05 31.7 5.7 64 4-73 2-69 (72)
119 PF08938 HBS1_N: HBS1 N-termin 85.5 0.44 9.5E-06 36.2 1.3 27 174-200 43-70 (79)
120 PRK05659 sulfur carrier protei 85.2 3.7 8E-05 29.5 6.1 61 2-75 1-61 (66)
121 KOG2086 Protein tyrosine phosp 84.4 1.6 3.5E-05 42.6 4.9 66 3-70 307-375 (380)
122 PRK07440 hypothetical protein; 84.0 5.8 0.00013 29.3 6.8 62 1-75 4-65 (70)
123 KOG2982 Uncharacterized conser 84.0 1.3 2.8E-05 42.5 4.0 56 16-74 352-415 (418)
124 cd06408 PB1_NoxR The PB1 domai 83.8 4.7 0.0001 31.4 6.4 46 2-52 3-48 (86)
125 PRK06944 sulfur carrier protei 83.6 6.5 0.00014 28.0 6.8 60 2-75 1-60 (65)
126 smart00455 RBD Raf-like Ras-bi 83.4 4.9 0.00011 29.8 6.2 51 4-57 2-54 (70)
127 PRK08053 sulfur carrier protei 83.2 6.2 0.00014 28.5 6.6 61 2-75 1-61 (66)
128 PRK12332 tsf elongation factor 82.4 2.2 4.8E-05 38.1 4.7 36 161-199 6-42 (198)
129 COG5100 NPL4 Nuclear pore prot 81.6 5.3 0.00011 39.5 7.2 73 2-76 1-79 (571)
130 TIGR00116 tsf translation elon 81.0 2.5 5.4E-05 40.1 4.7 36 161-199 6-42 (290)
131 cd00565 ThiS ThiaminS ubiquiti 80.9 6.6 0.00014 28.2 6.0 56 10-75 5-60 (65)
132 PF11069 DUF2870: Protein of u 80.3 2.9 6.3E-05 33.2 4.1 32 46-78 3-34 (98)
133 PF08337 Plexin_cytopl: Plexin 79.2 5.1 0.00011 41.1 6.6 65 12-77 202-290 (539)
134 TIGR02958 sec_mycoba_snm4 secr 78.7 14 0.00029 37.2 9.4 74 2-76 3-80 (452)
135 KOG2689 Predicted ubiquitin re 78.0 3.4 7.3E-05 38.7 4.4 36 163-201 4-41 (290)
136 CHL00098 tsf elongation factor 77.7 3.9 8.4E-05 36.7 4.7 36 161-199 3-39 (200)
137 COG2104 ThiS Sulfur transfer p 77.5 16 0.00036 26.9 7.2 61 2-75 3-63 (68)
138 PF00564 PB1: PB1 domain; Int 77.5 11 0.00023 28.0 6.5 45 2-50 2-47 (84)
139 PRK11130 moaD molybdopterin sy 77.4 24 0.00051 26.5 8.3 54 16-74 19-75 (81)
140 PF14732 UAE_UbL: Ubiquitin/SU 76.7 5.3 0.00012 30.9 4.6 52 20-74 7-67 (87)
141 PRK07696 sulfur carrier protei 76.2 12 0.00027 27.2 6.3 61 2-75 1-62 (67)
142 PRK06369 nac nascent polypepti 76.2 6.2 0.00013 32.3 5.0 38 160-200 77-115 (115)
143 PRK09377 tsf elongation factor 76.2 4.2 9.1E-05 38.5 4.7 36 161-199 7-43 (290)
144 KOG4250 TANK binding protein k 75.5 9.2 0.0002 40.3 7.2 50 2-54 314-364 (732)
145 TIGR01683 thiS thiamine biosyn 75.3 11 0.00024 26.9 5.8 57 9-75 3-59 (64)
146 cd05992 PB1 The PB1 domain is 74.7 11 0.00024 27.7 5.8 45 3-51 2-47 (81)
147 PF02196 RBD: Raf-like Ras-bin 74.5 17 0.00036 26.9 6.7 57 4-63 3-61 (71)
148 PF07223 DUF1421: Protein of u 74.1 4 8.6E-05 39.8 4.0 29 153-184 315-343 (358)
149 cd01787 GRB7_RA RA (RAS-associ 73.9 31 0.00067 26.8 8.1 67 3-71 4-80 (85)
150 PF12053 DUF3534: Domain of un 72.9 30 0.00066 29.5 8.6 74 2-77 1-81 (145)
151 PF10407 Cytokin_check_N: Cdc1 72.9 12 0.00026 28.2 5.5 63 12-77 3-71 (73)
152 cd01611 GABARAP Ubiquitin doma 71.9 25 0.00054 28.5 7.6 59 16-77 45-107 (112)
153 PF08825 E2_bind: E2 binding d 71.6 6.6 0.00014 30.3 4.0 58 16-74 1-69 (84)
154 PF08587 UBA_2: Ubiquitin asso 70.5 1.4 3.1E-05 30.2 0.0 20 163-185 6-26 (46)
155 KOG1364 Predicted ubiquitin re 69.6 5.2 0.00011 38.7 3.6 66 3-70 279-349 (356)
156 PF00788 RA: Ras association ( 69.5 43 0.00094 24.9 8.2 55 4-59 5-69 (93)
157 PRK11840 bifunctional sulfur c 69.5 13 0.00028 35.8 6.3 64 2-78 1-64 (326)
158 PRK01777 hypothetical protein; 69.4 22 0.00047 28.1 6.5 70 1-75 3-75 (95)
159 PF14533 USP7_C2: Ubiquitin-sp 69.2 27 0.00059 31.3 8.1 59 2-63 21-90 (213)
160 smart00144 PI3K_rbd PI3-kinase 68.7 38 0.00082 27.0 8.0 76 3-78 19-106 (108)
161 KOG2507 Ubiquitin regulatory p 68.7 10 0.00022 37.8 5.4 74 2-78 315-393 (506)
162 cd01768 RA RA (Ras-associating 68.3 47 0.001 24.8 9.2 66 11-77 12-86 (87)
163 PTZ00380 microtubule-associate 66.8 16 0.00036 30.1 5.6 57 17-76 46-105 (121)
164 cd06411 PB1_p51 The PB1 domain 66.5 19 0.00042 27.4 5.5 35 13-50 8-42 (78)
165 TIGR00264 alpha-NAC-related pr 66.0 13 0.00028 30.5 4.8 36 160-198 79-115 (116)
166 PF00794 PI3K_rbd: PI3-kinase 65.9 27 0.00059 27.5 6.6 76 2-77 17-103 (106)
167 PRK13901 ruvA Holliday junctio 65.9 8.6 0.00019 34.4 4.1 30 158-190 143-172 (196)
168 KOG2689 Predicted ubiquitin re 65.4 18 0.00039 34.0 6.1 69 2-73 211-284 (290)
169 TIGR00084 ruvA Holliday juncti 64.9 11 0.00024 33.3 4.6 28 158-188 146-173 (191)
170 PF12616 DUF3775: Protein of u 64.9 7.8 0.00017 29.3 3.1 39 163-202 21-60 (75)
171 PF02991 Atg8: Autophagy prote 64.7 29 0.00063 27.8 6.5 56 18-76 39-98 (104)
172 cd06398 PB1_Joka2 The PB1 doma 63.6 40 0.00087 26.3 7.0 69 4-76 3-87 (91)
173 PF15652 Tox-SHH: HNH/Endo VII 63.6 8.7 0.00019 30.6 3.2 30 156-188 68-97 (100)
174 PF09722 DUF2384: Protein of u 63.4 18 0.00039 24.9 4.5 22 261-282 27-48 (54)
175 PF02017 CIDE-N: CIDE-N domain 61.1 25 0.00054 26.8 5.2 65 4-77 5-72 (78)
176 PF09494 Slx4: Slx4 endonuclea 59.9 4.8 0.0001 29.2 1.1 20 274-293 2-21 (64)
177 KOG3391 Transcriptional co-rep 59.3 11 0.00023 31.9 3.1 32 52-83 112-143 (151)
178 cd01612 APG12_C Ubiquitin-like 58.7 83 0.0018 24.3 9.0 60 15-77 19-82 (87)
179 cd06396 PB1_NBR1 The PB1 domai 58.2 36 0.00079 26.1 5.7 30 9-41 7-38 (81)
180 PF06234 TmoB: Toluene-4-monoo 57.5 55 0.0012 25.4 6.6 62 14-76 17-84 (85)
181 cd06410 PB1_UP2 Uncharacterize 57.0 41 0.00088 26.6 6.0 40 6-49 17-56 (97)
182 KOG4842 Protein involved in si 56.9 2.5 5.4E-05 39.2 -1.0 66 1-70 1-67 (278)
183 PF08783 DWNN: DWNN domain; I 55.8 33 0.00071 25.9 5.0 32 5-36 2-35 (74)
184 PF02954 HTH_8: Bacterial regu 54.8 11 0.00024 24.7 2.1 27 174-202 5-31 (42)
185 KOG3439 Protein conjugation fa 52.6 56 0.0012 26.7 6.1 72 2-76 31-110 (116)
186 PF11816 DUF3337: Domain of un 52.3 44 0.00094 32.1 6.6 64 16-79 252-330 (331)
187 cd01817 RGS12_RBD Ubiquitin do 52.1 1E+02 0.0022 23.3 7.4 47 6-55 4-52 (73)
188 PRK14602 ruvA Holliday junctio 52.1 16 0.00035 32.7 3.4 27 158-187 154-180 (203)
189 COG0264 Tsf Translation elonga 52.0 24 0.00053 33.5 4.7 36 161-198 7-42 (296)
190 cd06539 CIDE_N_A CIDE_N domain 50.1 49 0.0011 25.3 5.2 48 22-74 21-70 (78)
191 PF12436 USP7_ICP0_bdg: ICP0-b 49.4 41 0.00089 30.9 5.8 73 2-77 69-153 (249)
192 cd01764 Urm1 Urm1-like ubuitin 49.2 30 0.00065 27.0 4.1 54 16-74 23-88 (94)
193 PRK08769 DNA polymerase III su 49.1 35 0.00075 32.7 5.4 40 158-200 173-212 (319)
194 PRK14606 ruvA Holliday junctio 48.9 22 0.00048 31.4 3.8 28 158-188 142-169 (188)
195 PF14327 CSTF2_hinge: Hinge do 48.6 11 0.00023 28.9 1.5 24 268-293 42-65 (84)
196 COG3760 Uncharacterized conser 48.2 33 0.00071 29.5 4.4 60 3-75 47-106 (164)
197 smart00266 CAD Domains present 47.3 62 0.0013 24.5 5.3 49 22-76 19-69 (74)
198 PF07462 MSP1_C: Merozoite sur 46.9 74 0.0016 32.7 7.4 20 151-170 350-369 (574)
199 COG0632 RuvA Holliday junction 46.8 20 0.00044 32.1 3.2 29 158-189 155-183 (201)
200 KOG4146 Ubiquitin-like protein 46.8 1.2E+02 0.0027 23.9 7.1 73 1-77 4-98 (101)
201 cd01615 CIDE_N CIDE_N domain, 46.7 62 0.0013 24.7 5.3 38 22-62 21-60 (78)
202 PRK14600 ruvA Holliday junctio 46.1 25 0.00053 31.1 3.6 28 158-188 144-171 (186)
203 COG2080 CoxS Aerobic-type carb 45.7 40 0.00087 29.1 4.7 71 1-74 1-75 (156)
204 PRK14601 ruvA Holliday junctio 45.6 25 0.00055 31.0 3.5 26 158-186 141-166 (183)
205 PF14053 DUF4248: Domain of un 45.2 15 0.00033 27.2 1.8 24 273-296 24-47 (69)
206 PRK14604 ruvA Holliday junctio 44.8 23 0.0005 31.5 3.2 27 159-188 149-175 (195)
207 PRK07993 DNA polymerase III su 42.9 49 0.0011 31.8 5.4 38 160-200 170-208 (334)
208 PF02824 TGS: TGS domain; Int 42.6 74 0.0016 22.5 5.0 59 4-74 1-59 (60)
209 PF07462 MSP1_C: Merozoite sur 41.5 72 0.0016 32.8 6.4 8 40-47 205-212 (574)
210 PF02505 MCR_D: Methyl-coenzym 40.0 59 0.0013 27.9 4.8 52 2-63 68-120 (153)
211 PRK14603 ruvA Holliday junctio 39.6 36 0.00077 30.3 3.6 27 158-187 151-177 (197)
212 PF09469 Cobl: Cordon-bleu ubi 39.3 26 0.00056 26.8 2.2 43 30-78 2-47 (79)
213 KOG4598 Putative ubiquitin-spe 39.3 53 0.0012 35.0 5.2 61 13-78 878-944 (1203)
214 PF04126 Cyclophil_like: Cyclo 39.3 22 0.00048 29.0 2.1 29 2-31 1-29 (120)
215 cd01818 TIAM1_RBD Ubiquitin do 38.3 99 0.0022 23.5 5.2 39 6-47 4-42 (77)
216 TIGR03260 met_CoM_red_D methyl 37.4 70 0.0015 27.4 4.8 52 2-63 67-118 (150)
217 KOG0559 Dihydrolipoamide succi 37.0 4.1E+02 0.0088 26.4 10.4 18 56-73 122-139 (457)
218 PF11333 DUF3135: Protein of u 36.9 16 0.00034 28.2 0.8 25 270-294 2-26 (83)
219 KOG4248 Ubiquitin-like protein 36.3 16 0.00034 40.2 0.9 69 6-77 329-397 (1143)
220 PF11547 E3_UbLigase_EDD: E3 u 35.8 1.3E+02 0.0029 20.9 5.0 37 160-199 10-48 (53)
221 KOG4147 Uncharacterized conser 35.4 63 0.0014 26.3 4.0 59 17-75 28-112 (127)
222 PF11372 DUF3173: Domain of un 35.4 45 0.00097 24.1 2.9 21 163-186 6-26 (59)
223 PF01376 Enterotoxin_b: Heat-l 35.2 33 0.00072 26.5 2.3 30 6-35 40-69 (102)
224 PF00276 Ribosomal_L23: Riboso 35.1 89 0.0019 24.2 4.8 41 12-55 21-62 (91)
225 cd06397 PB1_UP1 Uncharacterize 35.0 1.3E+02 0.0028 23.2 5.4 57 3-63 2-63 (82)
226 PF12436 USP7_ICP0_bdg: ICP0-b 34.9 95 0.0021 28.5 5.8 44 2-48 177-223 (249)
227 PF03474 DMA: DMRTA motif; In 34.9 56 0.0012 21.6 3.0 25 174-198 15-39 (39)
228 PF14848 HU-DNA_bdg: DNA-bindi 34.4 90 0.0019 25.5 5.0 38 159-202 31-70 (124)
229 KOG4572 Predicted DNA-binding 33.3 89 0.0019 34.0 5.7 62 10-74 3-68 (1424)
230 KOG2500 Uncharacterized conser 33.1 3.2E+02 0.0068 25.2 8.5 16 61-76 148-163 (253)
231 PRK13552 frdB fumarate reducta 33.0 68 0.0015 29.3 4.4 35 2-36 5-48 (239)
232 PF06006 DUF905: Bacterial pro 32.6 31 0.00067 25.7 1.7 19 171-190 5-23 (70)
233 cd01777 SNX27_RA Ubiquitin dom 32.1 1.1E+02 0.0023 23.9 4.6 42 2-46 2-43 (87)
234 PF03333 PapB: Adhesin biosynt 31.8 66 0.0014 25.2 3.5 41 151-203 16-56 (91)
235 COG3609 Predicted transcriptio 30.9 58 0.0013 25.1 3.1 31 153-185 7-39 (89)
236 PLN02983 biotin carboxyl carri 29.6 2.1E+02 0.0045 27.0 7.0 28 54-82 115-142 (274)
237 PF14847 Ras_bdg_2: Ras-bindin 29.3 1.6E+02 0.0035 23.6 5.5 48 4-51 3-50 (105)
238 KOG4361 BCL2-associated athano 29.2 20 0.00044 34.8 0.3 62 14-78 73-140 (344)
239 PF03931 Skp1_POZ: Skp1 family 29.2 39 0.00083 24.0 1.7 32 2-33 1-32 (62)
240 COG0089 RplW Ribosomal protein 29.1 2E+02 0.0043 22.7 5.8 60 11-73 21-90 (94)
241 PF14807 AP4E_app_platf: Adapt 28.6 1.5E+02 0.0032 23.8 5.1 62 15-77 24-86 (104)
242 PF07022 Phage_CI_repr: Bacter 28.4 66 0.0014 23.1 2.9 35 160-200 26-61 (66)
243 COG5131 URM1 Ubiquitin-like pr 28.1 3E+02 0.0065 21.7 7.2 73 1-76 2-92 (96)
244 PRK06090 DNA polymerase III su 27.9 1.1E+02 0.0023 29.4 5.0 39 158-201 168-206 (319)
245 cd06537 CIDE_N_B CIDE_N domain 27.9 1.5E+02 0.0033 22.8 4.8 64 4-74 5-69 (81)
246 PF04110 APG12: Ubiquitin-like 27.8 1.9E+02 0.0041 22.5 5.4 73 2-77 2-82 (87)
247 PF01988 VIT1: VIT family; In 27.8 95 0.0021 27.6 4.4 39 158-200 81-119 (213)
248 cd06536 CIDE_N_ICAD CIDE_N dom 27.5 1.5E+02 0.0033 22.7 4.8 49 22-76 21-73 (80)
249 PF08169 RBB1NT: RBB1NT (NUC16 26.7 41 0.00088 26.7 1.6 21 181-204 75-96 (96)
250 PF14533 USP7_C2: Ubiquitin-sp 26.5 57 0.0012 29.2 2.7 50 11-63 132-193 (213)
251 KOG3751 Growth factor receptor 26.1 1.9E+02 0.0041 29.9 6.4 76 4-81 191-276 (622)
252 KOG2660 Locus-specific chromos 25.5 57 0.0012 31.5 2.6 47 16-63 168-214 (331)
253 COG4008 Predicted metal-bindin 24.7 1.9E+02 0.0042 24.2 5.2 38 158-199 113-150 (153)
254 smart00804 TAP_C C-terminal do 24.0 2.6E+02 0.0055 20.3 5.3 44 158-204 11-60 (63)
255 PRK14605 ruvA Holliday junctio 23.9 85 0.0018 27.8 3.3 27 158-187 147-173 (194)
256 cd06538 CIDE_N_FSP27 CIDE_N do 23.7 2E+02 0.0043 22.0 4.8 49 22-76 21-70 (79)
257 PF10440 WIYLD: Ubiquitin-bind 23.7 1.2E+02 0.0026 22.4 3.4 24 158-184 10-33 (65)
258 PRK09814 beta-1,6-galactofuran 23.5 94 0.002 29.2 3.7 38 165-204 208-264 (333)
259 cd01775 CYR1_RA Ubiquitin doma 23.3 3.8E+02 0.0083 21.3 8.6 33 4-36 5-37 (97)
260 PRK05738 rplW 50S ribosomal pr 23.3 1.9E+02 0.0042 22.4 4.8 40 11-53 20-60 (92)
261 PF01577 Peptidase_S30: Potyvi 23.3 2.2E+02 0.0047 25.6 5.9 74 2-77 150-224 (245)
262 TIGR03636 L23_arch archaeal ri 22.6 2E+02 0.0043 21.7 4.6 35 11-48 14-48 (77)
263 PRK05841 flgE flagellar hook p 22.3 98 0.0021 32.4 3.8 36 2-37 249-293 (603)
264 KOG1661 Protein-L-isoaspartate 22.0 95 0.0021 28.4 3.2 33 155-194 6-39 (237)
265 COG5222 Uncharacterized conser 21.8 2.5E+02 0.0055 27.0 6.0 36 16-52 18-54 (427)
266 COG1308 EGD2 Transcription fac 21.8 1.9E+02 0.0041 23.9 4.6 35 160-197 85-120 (122)
267 TIGR00824 EIIA-man PTS system, 21.7 3.2E+02 0.007 21.7 6.1 34 13-48 30-63 (116)
268 COG1977 MoaD Molybdopterin con 21.6 3.6E+02 0.0077 20.3 6.0 53 18-74 24-78 (84)
269 PRK08640 sdhB succinate dehydr 21.2 1.3E+02 0.0029 27.6 4.2 33 2-34 6-45 (249)
270 PF09030 Creb_binding: Creb bi 21.1 50 0.0011 26.5 1.1 31 264-294 59-92 (104)
271 PF10346 Con-6: Conidiation pr 21.0 78 0.0017 20.6 1.8 17 175-191 2-18 (36)
272 PF11834 DUF3354: Domain of un 21.0 1.3E+02 0.0028 22.3 3.2 44 21-74 25-69 (69)
273 PRK11608 pspF phage shock prot 21.0 84 0.0018 29.9 2.8 27 174-202 286-312 (326)
274 KOG4261 Talin [Cytoskeleton] 21.0 2E+02 0.0044 31.1 5.7 62 11-72 12-79 (1003)
275 KOG3073 Protein required for 1 20.8 1.3E+02 0.0028 27.3 3.7 36 40-75 156-193 (236)
276 PF06487 SAP18: Sin3 associate 20.1 1.2E+02 0.0027 24.9 3.3 62 12-75 37-120 (120)
277 PF03607 DCX: Doublecortin; I 20.1 2.1E+02 0.0046 20.1 4.1 45 21-74 8-54 (60)
No 1
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.1e-62 Score=468.40 Aligned_cols=271 Identities=41% Similarity=0.658 Sum_probs=179.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~~ 81 (300)
|+|+||+++|++|.|+|++++||.+||++|+.+.|++.+++++|||||+||+|+|+++|++|+|+++++|+||++|+|..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~~ 80 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKTG 80 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCCC
Confidence 89999999999999999999999999999999987555899999999999999999999999999999999999998775
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCcccccccccccCCChH
Q 022228 82 TGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPT-PAPASASVSSVSATSESGVYGHAASNLVAGNNLE 160 (300)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~l~~g~~~e 160 (300)
.+..+.+...+.+++.+++.++.. +...+..+ +........+. .++. ++...+++.+.......+.|+|++|++||
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~l~~g~~~e 157 (378)
T TIGR00601 81 TGKSAPPAATPTSAPTPTPSPPAS-PASGMSAA-PASAVEEKSPSEESAT-ATAPESPSTSVPSSGSDAASTLVVGSERE 157 (378)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC-CCCCCccccccCCCCC-CCCCCCCCccccccCCCcccccccchHHH
Confidence 332221110110000000000000 00000000 00000000000 0000 00000000000000124678999999999
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCCccccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 022228 161 GAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240 (300)
Q Consensus 161 ~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|++||+|| |+|+||++|||||||||||||||||+|||++++... +.+. +... . . ....++
T Consensus 158 ~~I~~i~eMG---f~R~qV~~ALRAafNNPdRAVEYL~tGIP~~~~~~~----~~~~----~~~~-~---~---~~~~~~ 219 (378)
T TIGR00601 158 TTIEEIMEMG---YEREEVERALRAAFNNPDRAVEYLLTGIPEDPEQPE----PVQQ----TAAS-T---A---AATTET 219 (378)
T ss_pred HHHHHHHHhC---CCHHHHHHHHHHHhCCHHHHHHHHHhCCCccccccc----cCCC----cccc-c---c---cccCCC
Confidence 9999999999 999999999999999999999999999999866211 1110 0000 0 0 011112
Q ss_pred CCCCCCCCCCCCCCCC------CCCCCCCchhhhhCcHHHHHHHHHHHhCCCchHHHHhcc
Q 022228 241 NANPLDLFPQGLPDVG------SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCFKSWG 295 (300)
Q Consensus 241 ~~~~~~lf~~~~~~~~------~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~L~~~lq~~ 295 (300)
+..+ |||++++.+.. .+ .|+++|+|||++|||++||++||+||+||++|||+-
T Consensus 220 ~~~~-~lf~~a~~~~~~~~~~~~~-~g~~~l~~Lr~~pqf~~lR~~vq~NP~~L~~lLqql 278 (378)
T TIGR00601 220 PQHG-SVFEQAAQGGTEQPATEAA-QGGNPLEFLRNQPQFQQLRQVVQQNPQLLPPLLQQI 278 (378)
T ss_pred CCCc-chhhhhhcccccccccccc-cCCchHHHhhcCHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 2233 99999864321 11 145699999999999999999999999999999863
No 2
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-59 Score=433.73 Aligned_cols=246 Identities=50% Similarity=0.774 Sum_probs=183.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~~ 81 (300)
|+|+||+++|++|+|+|.+++||.++|++|+...|.| +|+++|||||+||+|+|+.++.+|+|+++++|+||++|+|..
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~d-yP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k~~ 79 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPD-YPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDKSA 79 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCC-CchhhheeeecceeccCCcchhhhccccCceEEEEEecCccc
Confidence 7999999999999999999999999999999999988 999999999999999999999999999999999999999831
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCChHH
Q 022228 82 TGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEG 161 (300)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~g~~~e~ 161 (300)
.+.. ++.+.++.. .+ ....+|..+ . .. ...++. ...++....++.+.++|++|+++|+
T Consensus 80 ~t~~----ap~s~~~~~---~p--~~~~ap~~s-~-------a~--~~s~~~---~~~~~~~~~~~~aas~Lv~G~~~e~ 137 (340)
T KOG0011|consen 80 STQV----APQSSAATH---LP--KAAEAPPSS-A-------AE--DASPAT---PAQTSQEDTYEIAASTLVVGSEYEQ 137 (340)
T ss_pred ccCC----CCCCccccC---CC--ccCCCCCcc-c-------cc--cCCCCc---cccccccchhhhhhhhhhccchhHH
Confidence 1111 000000000 00 000000000 0 00 000000 0012233457788999999999999
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCCccccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 022228 162 AIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241 (300)
Q Consensus 162 ~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (300)
+|.+||+|| |+||+|+|||||||||||||||||++|||+..+...+...+++ .+ . . + .+
T Consensus 138 ~V~~Im~MG---y~re~V~~AlRAafNNPeRAVEYLl~GIP~~~~~~~~~~~~~~----------~~--~-~--p---~~ 196 (340)
T KOG0011|consen 138 TVQQIMEMG---YDREEVERALRAAFNNPERAVEYLLNGIPEDAEVPEPEKSTAA----------AA--E-L--P---AN 196 (340)
T ss_pred HHHHHHHhC---ccHHHHHHHHHHhhCChhhhHHHHhcCCcccccCCcccCCccc----------CC--C-C--C---CC
Confidence 999999999 9999999999999999999999999999998665543211110 00 0 0 0 03
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchhhhhCcHHHHHHHHHHHhCCCchHHHHhcc
Q 022228 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCFKSWG 295 (300)
Q Consensus 242 ~~~~~lf~~~~~~~~~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~L~~~lq~~ 295 (300)
.+|+++|++++.... ++++|+|||++|||++||+|||+||+||++|||+-
T Consensus 197 ~~p~~~~~~~~~~~~----~~~~l~fLr~~~qf~~lR~~iqqNP~ll~~~Lqql 246 (340)
T KOG0011|consen 197 AQPLDLFPQGAVEAS----GGDPLEFLRNQPQFQQLRQMIQQNPELLHPLLQQL 246 (340)
T ss_pred CChhhcCCccchhhh----cCCchhhhhccHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 356899998765543 35899999999999999999999999999999974
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.79 E-value=3.7e-19 Score=133.91 Aligned_cols=73 Identities=26% Similarity=0.432 Sum_probs=71.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
|+|+||+++|+++.++|++++||++||++|+++.| +++++|+|+|+||.|+|+.+|++|||+++++|+++++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~g---i~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLN---VPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999874
No 4
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.79 E-value=6.1e-19 Score=132.91 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=69.8
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
||+|+||++.|+.+.++|++++||.+||++|++..| +++++|||+|+|++|+|+++|++|||++|++||+..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~---~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTG---TRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999999999999999999999999999999 999999999999999999999999999999999863
No 5
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.77 E-value=1.6e-18 Score=130.89 Aligned_cols=75 Identities=59% Similarity=0.860 Sum_probs=72.4
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVY--PAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~i--p~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|+|+||+++|++|.++|++++||.+||++|++..| + ++++|||+|+|++|+|+.+|++|||++|++|++++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~---i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~~ 77 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKG---CDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKPK 77 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhC---CCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecCC
Confidence 79999999999999999999999999999999999 7 999999999999999999999999999999999998864
No 6
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.77 E-value=1.8e-18 Score=131.90 Aligned_cols=74 Identities=26% Similarity=0.395 Sum_probs=70.4
Q ss_pred EEEEEEcCCCcE-EEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 2 MKIFVKTLKGTS-FDVE-VKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 2 M~I~VKtl~g~~-~~ie-V~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|+|+||+++|++ +.|+ +++++||.+||++|++..| +++++|||+|+||+|+|+.+|++|||+++++|+++++.-
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~g---i~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFN---VEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhC---CCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 7895 8999999999999999999 999999999999999999999999999999999999853
No 7
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.75 E-value=6.1e-18 Score=127.36 Aligned_cols=73 Identities=27% Similarity=0.402 Sum_probs=69.1
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|+|+||+ ++++.++|++++||.+||.+|+++.| +|+++|+|+|+||+|+|+++|++|+|+++++||++++.+.
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEG---IDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhC---CCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 7999997 47899999999999999999999999 9999999999999999999999999999999999998653
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=9.1e-18 Score=126.53 Aligned_cols=74 Identities=35% Similarity=0.551 Sum_probs=71.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|+|+||+++|+++.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++||++++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEG---IDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999999864
No 9
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.73 E-value=1.5e-17 Score=133.33 Aligned_cols=75 Identities=36% Similarity=0.635 Sum_probs=72.4
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|+|+||+++|+++.|+|++++||.+||++|+++.| +++++|||+|+||+|+|+++|++|+|+++++|+++++.+.
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 10
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.73 E-value=1.6e-17 Score=126.55 Aligned_cols=74 Identities=23% Similarity=0.363 Sum_probs=70.5
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
.|+|+||+++|+.+.|+|+++.||.+||++|+++.+ +++++|||+|+||+|+|+ +|++|||++|++|+||.+..
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~---~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~ 74 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLK---VPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVE 74 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhC---CChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecc
Confidence 489999999999999999999999999999999999 999999999999999999 99999999999999998753
No 11
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.72 E-value=3.5e-17 Score=122.79 Aligned_cols=74 Identities=36% Similarity=0.600 Sum_probs=71.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|+|+||+++|+++.++|++++||.+||++|+...| ++++.|||+|+|+.|+|+++|++|+|++|++|+++++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhC---CChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999999864
No 12
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.72 E-value=2e-17 Score=126.44 Aligned_cols=74 Identities=30% Similarity=0.380 Sum_probs=71.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQML--IYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL--i~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|+|+||+++|+++.++|+++.||.+||++|++..+ +++++||| +|+|++|+|+++|++|||++|++|+|+++|-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~---i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIG---VPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhC---CCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999 99999999 9999999999999999999999999999864
No 13
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.72 E-value=2.7e-17 Score=123.86 Aligned_cols=72 Identities=26% Similarity=0.315 Sum_probs=69.5
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|+||++.|+++.|+|++++||.+||++|+...| +|+++|+|+|+||+|+|+++|++|||+++++|+++++..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRER---VQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhC---CCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 689999999999999999999999999999999 999999999999999999999999999999999998864
No 14
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.71 E-value=4.6e-17 Score=122.11 Aligned_cols=74 Identities=42% Similarity=0.670 Sum_probs=71.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|+|+||+.+|+++.++|++++||.+||++|+...+ +++++|+|+|+|+.|+|+.+|++|+|+++++|+++++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhC---CCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999999864
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.71 E-value=3.1e-17 Score=122.59 Aligned_cols=70 Identities=26% Similarity=0.457 Sum_probs=67.0
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
++||.++|+++.++|++++||.+||.+|++..| +++++|||+|+|++|+|+.+|++|+|+++++|||++.
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~g---i~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~~ 70 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEG---VDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIVN 70 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEeC
Confidence 468999999999999999999999999999999 9999999999999999999999999999999999873
No 16
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.71 E-value=3.9e-17 Score=121.54 Aligned_cols=70 Identities=30% Similarity=0.539 Sum_probs=67.6
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
|+||++.|+++.++|++++||.+||++|+++.| +++++|+|+|+|+.|+|+.+|++|+|+++++||++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQG---VPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHC---CCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999 9999999999999999999999999999999999864
No 17
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.70 E-value=6.2e-17 Score=120.17 Aligned_cols=72 Identities=43% Similarity=0.579 Sum_probs=69.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
|+|+||+++|+++.+++++++||.+||++|+...| ++++.|+|+|+|++|+|+.+|++|||++|++|+++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVG---IPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999864
No 18
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.69 E-value=7.7e-17 Score=122.96 Aligned_cols=73 Identities=25% Similarity=0.254 Sum_probs=64.8
Q ss_pred EEEEEEcCCCcE--EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcc--cCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTS--FDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENK--VAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~--~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~g--I~~g~~I~v~v 75 (300)
|.|+||+.+|++ |.+++++++||.+||++|+...+.. .++++|||||+||+|+|+.+|++|. ++++.+||++.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~-~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSK-PLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCC-CChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 789999999998 5555689999999999999987421 5689999999999999999999996 99999999985
No 19
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.69 E-value=1.1e-16 Score=119.49 Aligned_cols=71 Identities=28% Similarity=0.421 Sum_probs=67.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
|+|+||+.+|+ +.|+|++++||.+||++|++..| ++.++|+|+|+||+|+|+++|++|||+++++||++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~---i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFK---ANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 58999999997 58999999999999999999999 9999999999999999999999999999999999875
No 20
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.68 E-value=1.3e-16 Score=117.78 Aligned_cols=69 Identities=43% Similarity=0.693 Sum_probs=66.1
Q ss_pred EcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 7 KTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 7 Ktl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|+++|+.|.|+|++++||.+||++|+...+ ++++.|+|+|+|++|+|+.+|++|||++|++|+++++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETG---IPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHT---STGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccc---cccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 678999999999999999999999999999 999999999999999999999999999999999988753
No 21
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.66 E-value=2.3e-16 Score=119.11 Aligned_cols=70 Identities=31% Similarity=0.460 Sum_probs=66.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY---QGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~---~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+|| |+|++|.|+|++++||.+||++|++.++ +|+++|||+| +|++|+|+.+|++|+|++|++|+||.
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tg---vp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTG---VLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHC---CCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 578999 7999999999999999999999999999 9999999996 99999999999999999999999985
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.64 E-value=6.5e-16 Score=115.60 Aligned_cols=68 Identities=35% Similarity=0.491 Sum_probs=64.3
Q ss_pred EEEEcC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhcccCCCcEEEEE
Q 022228 4 IFVKTL-KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD-TTLEENKVAENSFVVIM 74 (300)
Q Consensus 4 I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~-~tL~d~gI~~g~~I~v~ 74 (300)
|+||+. +|+++.++|++++||.+||.+|+.+.| +|+++|+|+|+||.|+|+ .+|++|||++|++||+-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~g---ip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESG---IPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhC---CCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 689999 999999999999999999999999999 999999999999999987 68999999999999873
No 23
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.61 E-value=2e-15 Score=111.89 Aligned_cols=70 Identities=30% Similarity=0.428 Sum_probs=66.8
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+||+. |+.+.++|++++||.+||++|+..+| +++++|||+|+|+.|+|+++|++|||++|++|+||.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTG---VEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhC---CChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999986 99999999999999999999999999 999999999999999999999999999999999874
No 24
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.3e-16 Score=109.65 Aligned_cols=70 Identities=36% Similarity=0.591 Sum_probs=68.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
|.|.||+++|+.+.|++++.++|..+|++|+++.| +|+.+|||||.||.+.|+++-.+|++.-|++||++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeG---IPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcC---CCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999974
No 25
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.60 E-value=4.3e-15 Score=112.49 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=65.1
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 9 LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 9 l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
++|+++.|+|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETG---MPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 5899999999999999999999999999 9999999999999999999999999999999999998754
No 26
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.56 E-value=1.3e-14 Score=141.50 Aligned_cols=77 Identities=34% Similarity=0.592 Sum_probs=71.8
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~~ 81 (300)
++|+||+.++ ++.|.|..+.||++||++|....+ +++++++|||.||+|+|++||..|||++|.+||||++....+
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~---a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~ 91 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFG---APPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRP 91 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcC---CChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCC
Confidence 7899999988 899999999999999999999998 899999999999999999999999999999999998765544
Q ss_pred C
Q 022228 82 T 82 (300)
Q Consensus 82 ~ 82 (300)
.
T Consensus 92 ~ 92 (493)
T KOG0010|consen 92 T 92 (493)
T ss_pred C
Confidence 3
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.53 E-value=8.9e-14 Score=108.07 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=72.1
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|.|+|++.+|+.+.+.|.+++||..||++++++.| +++++|||+|+|+.|+|+.|+.+|+|.++++|+|+++...
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~g---i~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQG---LSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhC---CCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEeccc
Confidence 88999999999999999999999999999999999 9999999999999999999999999999999999988653
No 28
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.50 E-value=6.3e-14 Score=100.99 Aligned_cols=64 Identities=47% Similarity=0.732 Sum_probs=61.1
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCc
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENS 69 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~ 69 (300)
|+|+||+.+ +.+.++|+++.||.+||.+|+..++ ++++.|+|+|+|+.|+|+++|++|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~---~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTG---IPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999998 7999999999999999999999999 999999999999999999999999999875
No 29
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.8e-15 Score=118.66 Aligned_cols=76 Identities=41% Similarity=0.639 Sum_probs=72.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
|+++++++.|++..++|++++||..||.+|..+.| +|+++|+|+|+||+|+|..||.+|||...++||++.+.+..
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~G---i~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccC---CCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 56788899999999999999999999999999999 99999999999999999999999999999999999988764
No 30
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=4e-14 Score=119.32 Aligned_cols=78 Identities=38% Similarity=0.598 Sum_probs=74.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~~ 81 (300)
|+|+|+++.++++.++|..++||..+|.+|++..+ ||+++|||||.|+.|+|..+|+||+|+..++|+++++.+...
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~eg---Ip~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccC---CCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999976654
Q ss_pred C
Q 022228 82 T 82 (300)
Q Consensus 82 ~ 82 (300)
.
T Consensus 78 k 78 (156)
T KOG0004|consen 78 K 78 (156)
T ss_pred c
Confidence 3
No 31
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.45 E-value=1e-13 Score=104.65 Aligned_cols=55 Identities=25% Similarity=0.189 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCC-CCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 20 PEDTVFDVKMKIETVQGSDVY-PAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 20 ~~~TV~~LK~kI~~~~g~~~i-p~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
.++||.+||++|+++.+.. + ++++|||||+||+|+|+++|++|||++|++||++.
T Consensus 19 ~~~TV~~LK~kI~~~~~eg-i~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDS-LPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccC-CCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4689999999999996322 5 58999999999999999999999999999999985
No 32
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.40 E-value=6.4e-13 Score=107.00 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=64.7
Q ss_pred EEEEEEcCCCcEE-EEEeCCCCCHHHHHHHHHHHhCC--CCCC--CCCeEEEeCCeecCCCCchhhcc------cCCCcE
Q 022228 2 MKIFVKTLKGTSF-DVEVKPEDTVFDVKMKIETVQGS--DVYP--AAQQMLIYQGKVLKDDTTLEENK------VAENSF 70 (300)
Q Consensus 2 M~I~VKtl~g~~~-~ieV~~~~TV~~LK~kI~~~~g~--~~ip--~~~qkLi~~GkiL~D~~tL~d~g------I~~g~~ 70 (300)
+.|+||..+|..+ .+.+.+++||.+||++|++..+. ..+| +++|||||+||+|+|++||++|+ +....+
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T 84 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence 6788888888654 36788999999999999966632 1255 99999999999999999999999 777789
Q ss_pred EEEEEecCC
Q 022228 71 VVIMLTKNK 79 (300)
Q Consensus 71 I~v~v~k~~ 79 (300)
+||+++.+.
T Consensus 85 mHvvlr~~~ 93 (113)
T cd01814 85 MHVVVQPPL 93 (113)
T ss_pred EEEEecCCC
Confidence 999998654
No 33
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.37 E-value=2.5e-12 Score=93.81 Aligned_cols=68 Identities=47% Similarity=0.758 Sum_probs=64.4
Q ss_pred EEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 5 FVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 5 ~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
+||..+|+.+.++++++.||.+||++|+...+ ++++.|+|+|+|+.|+|+.+|.+|+|++++.|+|+.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~---~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEG---VPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 37778899999999999999999999999999 999999999999999999999999999999999875
No 34
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.36 E-value=3e-12 Score=96.93 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=59.6
Q ss_pred EEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecC-CCCchhhcccC-CCcEEEEEE
Q 022228 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLK-DDTTLEENKVA-ENSFVVIML 75 (300)
Q Consensus 6 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~-D~~tL~d~gI~-~g~~I~v~v 75 (300)
=|...|.++.|+|++++||.+||.+|+.+.| +|++.||| |.|+.|. |+++|++|||+ +|++|++.+
T Consensus 7 ~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~g---ip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 7 DAQSHTVTIWLTVRPDMTVAQLKDKVFLDYG---FPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccccCCCeEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 3555788999999999999999999999999 99999999 9999985 66899999999 789999864
No 35
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.30 E-value=1.2e-11 Score=92.00 Aligned_cols=71 Identities=25% Similarity=0.413 Sum_probs=65.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA-AQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+|++.+|+.+.+.|.++.+|..|+++++++.+ ++. +.++|+|+|+.|++++|+++|+|++|++|+|++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~---i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKG---IPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHT---TTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhC---CCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999 889 999999999999999999999999999999874
No 36
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=99.13 E-value=1e-10 Score=76.58 Aligned_cols=36 Identities=44% Similarity=0.704 Sum_probs=33.7
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHH
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYL 197 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL 197 (300)
.++.|++|++|| |++++|++||+.+.||.|+|++||
T Consensus 2 ~~~~v~~L~~mG---f~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMG---FSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHT---S-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHhC
Confidence 478999999999 999999999999999999999998
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.09 E-value=3.1e-10 Score=89.38 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=56.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-CCchhhcccCCCcEEEEEEec
Q 022228 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKD-DTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 13 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D-~~tL~d~gI~~g~~I~v~v~k 77 (300)
...++|++++||++||.+|..+.+ +++.+|||+|+|+.|.| .+||++|||..++.|++.+..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~---V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFS---VAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhc---CCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 466889999999999999999999 99999999999999965 569999999999999998754
No 38
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.01 E-value=4.2e-09 Score=85.60 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=56.7
Q ss_pred EEEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCC----CCCCCCeEEEeCCeecCCCCchhhcccCCCc------E
Q 022228 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSD----VYPAAQQMLIYQGKVLKDDTTLEENKVAENS------F 70 (300)
Q Consensus 2 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~----~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~------~ 70 (300)
+.|+++..+|+ ...+.+++++||.+||+.|......+ ...+..+||||.||+|+|+++|++|++..++ +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 57888888999 78899999999999999999765322 1235689999999999999999999998777 4
Q ss_pred EEEEEec
Q 022228 71 VVIMLTK 77 (300)
Q Consensus 71 I~v~v~k 77 (300)
+||+++.
T Consensus 83 mHlvvrp 89 (111)
T PF13881_consen 83 MHLVVRP 89 (111)
T ss_dssp EEEEE-S
T ss_pred EEEEecC
Confidence 5566554
No 39
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=99.00 E-value=1.9e-10 Score=83.12 Aligned_cols=30 Identities=60% Similarity=0.941 Sum_probs=27.8
Q ss_pred hhhhhCcHHHHHHHHHHHhCCCchHHHHhc
Q 022228 265 LDFLRNSPQFQVLRAMVQANPQLFPCFKSW 294 (300)
Q Consensus 265 l~~Lr~~pqf~~lR~~vq~nP~~L~~~lq~ 294 (300)
|+|||++|+|++||++||+||++|++|||+
T Consensus 1 L~~Lr~~Pqf~~lR~~vq~NP~lL~~lLqq 30 (59)
T PF09280_consen 1 LEFLRNNPQFQQLRQLVQQNPQLLPPLLQQ 30 (59)
T ss_dssp CGGGTTSHHHHHHHHHHHC-GGGHHHHHHH
T ss_pred ChHHHcChHHHHHHHHHHHCHHHHHHHHHH
Confidence 689999999999999999999999999986
No 40
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=5.1e-10 Score=117.04 Aligned_cols=72 Identities=28% Similarity=0.439 Sum_probs=68.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
..|+||+++.++.+|.|+..+||++||+.|.++.+ |+.+.|||||.|++|.|++++.+|+| +|.+|||+-|.
T Consensus 3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~n---i~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverp 74 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVN---IPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERP 74 (1143)
T ss_pred cceeeeecccceeEEEechHHHHHHHHHHHHHhcc---cccccceeeecceeeccchhhhhccC-CCeEEEeeccC
Confidence 35899999999999999999999999999999999 99999999999999999999999999 99999999883
No 41
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.99 E-value=2.9e-09 Score=82.21 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=60.3
Q ss_pred EEEEEEcC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeCCe-----ec-CCCCchhhcccCCCcEEEE
Q 022228 2 MKIFVKTL-KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQML-IYQGK-----VL-KDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL-i~~Gk-----iL-~D~~tL~d~gI~~g~~I~v 73 (300)
++|.|+.. +....+..+.+++||.+||++|+..+| +++..|+| +|.|+ .| +|+++|.+|++++|..|||
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G---~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhV 78 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVG---TPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHV 78 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHC---CCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEE
Confidence 46777653 344566679999999999999999999 99999999 58887 45 6778999999999999999
Q ss_pred EEe
Q 022228 74 MLT 76 (300)
Q Consensus 74 ~v~ 76 (300)
+-.
T Consensus 79 vD~ 81 (84)
T cd01789 79 IDV 81 (84)
T ss_pred EeC
Confidence 854
No 42
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.95 E-value=7.5e-09 Score=74.91 Aligned_cols=72 Identities=43% Similarity=0.638 Sum_probs=68.1
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
++++++.|+.+.+++....+|..+|.+|....+ ++...|+|+|.|+.|.|+.+|.+|+|..++++++..+.+
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~---~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEG---IPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcC---CCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 577889999999999999999999999999999 999999999999999999999999999999999988764
No 43
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=98.93 E-value=1.8e-09 Score=70.74 Aligned_cols=37 Identities=49% Similarity=0.781 Sum_probs=35.2
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
++.|++|++|| |+|++|++||+++.||.++|++||+.
T Consensus 2 ~~~v~~L~~mG---f~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 2 EEKLEQLLEMG---FSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 57899999999 99999999999999999999999974
No 44
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.90 E-value=2.3e-09 Score=69.88 Aligned_cols=36 Identities=53% Similarity=0.828 Sum_probs=34.6
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl 198 (300)
++.|++|++|| |++++|++||+...||.++|++||+
T Consensus 2 ~~~v~~L~~mG---f~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEMG---FSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 67899999999 9999999999999999999999995
No 45
>PLN02560 enoyl-CoA reductase
Probab=98.86 E-value=6.2e-09 Score=98.62 Aligned_cols=70 Identities=30% Similarity=0.425 Sum_probs=61.6
Q ss_pred EEEEEEcCCCcEE---EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C----eecCCCCchhhcccCCCcEE
Q 022228 2 MKIFVKTLKGTSF---DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ---G----KVLKDDTTLEENKVAENSFV 71 (300)
Q Consensus 2 M~I~VKtl~g~~~---~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~---G----kiL~D~~tL~d~gI~~g~~I 71 (300)
|+|+|+..+|+.+ +|+|+++.||++||++|+++.+. +++++|||++. | +.|+|+++|++||++++++|
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~--~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstL 78 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKK--YYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTV 78 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCC--CChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceE
Confidence 7899998889887 79999999999999999999771 37899999982 3 48899999999999999987
Q ss_pred EE
Q 022228 72 VI 73 (300)
Q Consensus 72 ~v 73 (300)
++
T Consensus 79 y~ 80 (308)
T PLN02560 79 VF 80 (308)
T ss_pred EE
Confidence 65
No 46
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.86 E-value=1e-08 Score=79.46 Aligned_cols=74 Identities=23% Similarity=0.363 Sum_probs=59.7
Q ss_pred CEEEEEEcCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----C---eec-CCCCchhhcccCCCcE
Q 022228 1 MMKIFVKTLKG--TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ----G---KVL-KDDTTLEENKVAENSF 70 (300)
Q Consensus 1 mM~I~VKtl~g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~----G---kiL-~D~~tL~d~gI~~g~~ 70 (300)
|++|+|..... +.++..++.++||.+||.+|+..+| ++++.|+|.|. + ..| +|+++|.+||+++|..
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~G---i~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~ 77 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTG---IPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMR 77 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHT---S-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhC---CCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCE
Confidence 46788876554 4889999999999999999999999 99999999875 2 224 5678999999999999
Q ss_pred EEEEEec
Q 022228 71 VVIMLTK 77 (300)
Q Consensus 71 I~v~v~k 77 (300)
|||.=..
T Consensus 78 i~V~D~~ 84 (87)
T PF14560_consen 78 IHVVDTN 84 (87)
T ss_dssp EEEEE-T
T ss_pred EEEEeCC
Confidence 9998654
No 47
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.76 E-value=3.4e-08 Score=79.61 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=59.8
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhccc-------CCCcEEEEEE
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV-------AENSFVVIML 75 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI-------~~g~~I~v~v 75 (300)
-|.|| .+..++.+++.++.||.+||++|+.... .|+++|+|+..+.+|+|++||+|||+ ....+|-+.+
T Consensus 4 FlmIr-R~KTTiF~dakes~tVlelK~~iegI~k---~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~ 79 (119)
T cd01788 4 FLMIR-RHKTTIFTDAKESTTVYELKRIVEGILK---RPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAF 79 (119)
T ss_pred EEEEE-ecceEEEeecCCcccHHHHHHHHHHHhc---CChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEE
Confidence 34444 2344677899999999999999999998 99999999988899999999999999 5577777777
Q ss_pred ec
Q 022228 76 TK 77 (300)
Q Consensus 76 ~k 77 (300)
|+
T Consensus 80 r~ 81 (119)
T cd01788 80 RS 81 (119)
T ss_pred ec
Confidence 75
No 48
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.71 E-value=4.1e-08 Score=74.38 Aligned_cols=69 Identities=25% Similarity=0.249 Sum_probs=54.2
Q ss_pred EEEEEcCC-CcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCCCCchhhcccCCCcEEEE
Q 022228 3 KIFVKTLK-GTSFDVEVK-PEDTVFDVKMKIETVQGSDVYPAAQQML--IYQGKVLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 3 ~I~VKtl~-g~~~~ieV~-~~~TV~~LK~kI~~~~g~~~ip~~~qkL--i~~GkiL~D~~tL~d~gI~~g~~I~v 73 (300)
.|.++... .....++++ ++.||.+||+.|+...+. +++++||| ++.|++|.|+.+|.+|||++|++|+|
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~--~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQ--LTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCC--CCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 46666555 333334444 889999999999988651 57899888 58999999999999999999998876
No 49
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.56 E-value=4.4e-07 Score=62.14 Aligned_cols=67 Identities=33% Similarity=0.464 Sum_probs=60.7
Q ss_pred EEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 6 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+..++..+.+.+..+.||.+||++|..+.+ ++++.++|+++|..+.+...+.+|++.+++.|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLG---LPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHC---cChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444788899999999999999999999999 889999999999999999988999999999998864
No 50
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.51 E-value=1.9e-07 Score=71.60 Aligned_cols=68 Identities=26% Similarity=0.345 Sum_probs=44.4
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---Ceec--CCCCchhhcccCCCcEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ---GKVL--KDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~---GkiL--~D~~tL~d~gI~~g~~I~v 73 (300)
|-|.|++.+| .+.|++++++||.+||++|.+..+ ++...+.|..+ ...| .++++|+++||+.||.|++
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~---~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLS---IPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcC---CCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 7899998777 788999999999999999999999 88888888543 2344 5678999999999999976
No 51
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.44 E-value=1.2e-06 Score=65.49 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=63.1
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ---G--KVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~---G--kiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
++|+||-+.+..+.+.|+|..+|.+||++|....+ + ...|||.|. | ..|.+.++|.+|||-.+-.|.|+-.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~---~-~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRN---C-SGLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhC---c-ccceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 58999999999999999999999999999999999 5 469999993 3 4679999999999998888887764
Q ss_pred c
Q 022228 77 K 77 (300)
Q Consensus 77 k 77 (300)
-
T Consensus 77 ~ 77 (80)
T cd01811 77 F 77 (80)
T ss_pred C
Confidence 3
No 52
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.5e-07 Score=68.45 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=64.0
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
|+.|.+...-|++..|.+.+++||+++|+.|+..+| ..++.+.|---+.+++|.-+|++|.|++|-.+.+.
T Consensus 1 miev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtG---T~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 1 MIEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred CceehhhhhcCceEEEEeCCcccccCHHHHHHHhhC---CChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 678889989999999999999999999999999999 77888888766778899999999999999887664
No 53
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.1e-06 Score=84.12 Aligned_cols=72 Identities=24% Similarity=0.400 Sum_probs=66.9
Q ss_pred EEEEEcCCCcEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 3 KIFVKTLKGTSFDVE-VKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 3 ~I~VKtl~g~~~~ie-V~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
.|.|| |.|+.|.++ ++.++|+..||.+|...+| +++++||++++|+.|.|+-.+..++||+|.+|++|.+.-
T Consensus 5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTg---V~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTG---VPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred eEeee-ecCccccceeccCCCchHHHHHHHHHhcC---CCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 36777 899999998 9999999999999999999 999999999999999999999999999999999998653
No 54
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.2e-06 Score=80.28 Aligned_cols=73 Identities=32% Similarity=0.502 Sum_probs=62.5
Q ss_pred EEEEEEcC---CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTL---KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl---~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
|.|.|+.- .-..+.|+|+.+..|.+||+.++...| +|+++.|+||.||.|.|+.++..+.+...+.+|+|.-+
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~g---vp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lR 76 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQG---VPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLR 76 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhC---CChhheEEEEeccccccCceeecccccccchhhhhccC
Confidence 45566643 223588899999999999999999999 99999999999999999999999999888999988443
No 55
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.3e-05 Score=61.07 Aligned_cols=73 Identities=11% Similarity=0.226 Sum_probs=66.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
+.|+|+.-++....+.|..+.+.+.|++..++..| +....+|++|+|+.+.+.+|-.+++++++|.|.++...
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~G---l~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQG---LSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcC---CccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence 56777776677788999999999999999999999 88999999999999999999999999999999998754
No 56
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.71 E-value=5.6e-05 Score=59.30 Aligned_cols=61 Identities=26% Similarity=0.362 Sum_probs=50.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CC-eecCCCCchhhcccC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY-QG-KVLKDDTTLEENKVA 66 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~-~G-kiL~D~~tL~d~gI~ 66 (300)
|-|.||. ...++.++.+++.||.+||.+++.... -|++.|+|+. .- .+|+|.++|+|||..
T Consensus 3 ~f~~VrR-~kttif~da~es~tV~elK~~l~gi~~---~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRR-HKTTIFTDAKESSTVFELKRKLEGILK---RPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeee-cceeEEeecCccccHHHHHHHHHHHHh---CCCcchheeecCHHHHhhccchhhhcccc
Confidence 4456663 345678899999999999999999998 8999999976 33 688999999999864
No 57
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.56 E-value=0.0002 Score=56.85 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=46.0
Q ss_pred EEEEcCC-CcEEEEEeC--CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhc
Q 022228 4 IFVKTLK-GTSFDVEVK--PEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63 (300)
Q Consensus 4 I~VKtl~-g~~~~ieV~--~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~ 63 (300)
|+||..+ -..+.++|. .+.||..||+.|.+..+.+ ..-..+||||+||+|.|+..|...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~-~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPE-PSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCC-CccccEEeeecCcccCccchhhhh
Confidence 5566554 234677777 7899999999999998433 556789999999999998877664
No 58
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.50 E-value=0.00028 Score=53.58 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=51.1
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC---CeEEE-eCCeecCCCCchhhcccCCCcEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAA---QQMLI-YQGKVLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~---~qkLi-~~GkiL~D~~tL~d~gI~~g~~I~v 73 (300)
++|+|..-+|+.+.+.+..+.+|.+|...|.+..+....... ..+|. -+|..|+++++|.++||.+|+.|++
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 567887655689999999999999999999988773212222 36676 6899999999999999999999986
No 59
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.47 E-value=0.001 Score=50.50 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=58.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEE--eCCeecCCC--CchhhcccCCCcEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQ-QMLI--YQGKVLKDD--TTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-qkLi--~~GkiL~D~--~tL~d~gI~~g~~I~v 73 (300)
.+|.||..+|+.+...+..++||.+|...|..... .+... .+|+ |-.+.|.++ ++|+++|+..+.+|+|
T Consensus 7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~---~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLF---SPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHH---CTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcC---CCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 57899999999999999999999999999988876 33443 7786 677888554 6999999999998876
No 60
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.46 E-value=0.00071 Score=50.79 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=58.8
Q ss_pred EEEEE--EcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCeEEEeCCeecCCCCchhhcccCCCcEEEE
Q 022228 2 MKIFV--KTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYP--AAQQMLIYQGKVLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~V--Ktl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip--~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v 73 (300)
|+|+| +.++|.+|.+.+....+|+.|-..+.+....+..+ -..+|..-++++|.++..|.+|+|.+||.+.+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 45554 67789999999999999999999887776532122 24678999999999999999999999999875
No 61
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=97.45 E-value=0.00022 Score=47.75 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=35.2
Q ss_pred hHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 159 LEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 159 ~e~~I~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
+++.|+.|.+| . |+++.+.++|++.-+|.|+||++|+.|
T Consensus 1 ~~~~v~~L~~mFP~---~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 1 REEMVQQLQEMFPD---LDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp CHHHHHHHHHHSSS---S-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 36789999999 6 999999999999999999999999865
No 62
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00011 Score=75.01 Aligned_cols=43 Identities=35% Similarity=0.649 Sum_probs=40.0
Q ss_pred CChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
+.-|+.|..|++|| |.|.|++.||++..||.+|||||+++-+-
T Consensus 633 ~~~e~~v~si~smG---f~~~qa~~aL~~~n~nveravDWif~h~d 675 (763)
T KOG0944|consen 633 EVDEESVASIVSMG---FSRNQAIKALKATNNNVERAVDWIFSHMD 675 (763)
T ss_pred CCChhHheeeeeec---CcHHHHHHHHHhcCccHHHHHHHHHhccc
Confidence 45688999999999 99999999999999999999999999865
No 63
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.34 E-value=0.0016 Score=49.38 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=56.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC---CCchhhcccCCCcEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLKD---DTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL~D---~~tL~d~gI~~g~~I~v 73 (300)
.+|.||..+|+.+...+..++||.+|.+.|....+ ......+|+ |-.|.|.+ +++|.++|+..+.+|+|
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~---~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALT---DGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHccc---CCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 47899999999999999999999999999966555 445567775 66788854 47999999988888765
No 64
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.17 E-value=0.0037 Score=47.02 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=53.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC---CCchhhcccCCCcEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLKD---DTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL~D---~~tL~d~gI~~g~~I~v 73 (300)
.+|.||..+|+.+...+..++||.+|.+.|..... . ....+|+ |-.|.|.| +++|+++|+. .+.+++
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~---~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGP---P-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCC---C-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEE
Confidence 47899999999999999999999999999987654 2 4567776 56788854 7899999999 455544
No 65
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.06 E-value=0.0053 Score=46.65 Aligned_cols=68 Identities=19% Similarity=0.408 Sum_probs=56.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC---CCchhhcccCCCcEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLKD---DTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL~D---~~tL~d~gI~~g~~I~v 73 (300)
.+|.||..+|+.+...+..++||.+|.+.|....+ . ....+|+ |-.|.+.+ +++|.++|+....+|+|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~---~-~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG---N-GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC---C-CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 47899999999999999999999999999986654 2 2557776 67888854 47999999998888876
No 66
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.05 E-value=0.0051 Score=46.90 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=52.8
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCchhhcccCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLKD-DTTLEENKVAEN 68 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL~D-~~tL~d~gI~~g 68 (300)
-+|.||..+|+.+...+..++||.+|++.|....+. .......|+ |-.|.|.| +.||+|.|+.+.
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~--~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPE--FAARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCC--CCCCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 478999999999999999999999999999987641 223567776 67888854 679999999853
No 67
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00017 Score=68.32 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=56.2
Q ss_pred EEEEEEcCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCC--cEEEEEEec
Q 022228 2 MKIFVKTLKG--TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAEN--SFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g--~~I~v~v~k 77 (300)
+.+.||..+. +...|..+..+||++||..++..+..+ --..+|||||.||.|.|...|+|.-+|.. -.+||+...
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPsk-pl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcns 88 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSK-PLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNS 88 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCC-CchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCC
Confidence 3566776554 457788889999999999999987643 23578999999999999999999866543 344555443
No 68
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0042 Score=48.36 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=60.7
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
.+.|-..+|.++.+.|..+.+...|.+..+...| -.-+..|++|+|+.++-++|-.|+++.+++.|-++.
T Consensus 26 nLkvv~qd~telfFkiKktT~f~klm~af~~rqG---K~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 26 NLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQG---KNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred ceEEecCCCCEEEEEEeccchHHHHHHHHHHHhC---cCcceeEEEEcceecCCCCChhhcCCccchHHHHHH
Confidence 3555556788888999999999999999999999 447899999999999999999999999999876543
No 69
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0025 Score=56.93 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=55.9
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCC--cEEEEEEec
Q 022228 10 KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAEN--SFVVIMLTK 77 (300)
Q Consensus 10 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g--~~I~v~v~k 77 (300)
.++.|.+.+...+||+++|.++....+ +.+-.|+++|+|++|-|...|.+|+|..| -+|.++|..
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg---~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVlq 221 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEG---VDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVLQ 221 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhc---cchhhheeeccCCceeccccceeeeecCCCEEEEEEEecc
Confidence 466788888899999999999999999 66889999999999999999999999999 444444443
No 70
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.79 E-value=0.013 Score=45.13 Aligned_cols=70 Identities=16% Similarity=0.362 Sum_probs=59.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC---CCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLK---DDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL~---D~~tL~d~gI~~g~~I~v~v 75 (300)
-+|.||..+|+..+-.+..++++.+|...|.. .| .+.+..+|+ |--|.+. .+.||++.|+....+|+|--
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g---~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KG---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cC---CCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 47999999999999999999999999999988 56 678889997 5677773 34799999999999998753
No 71
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.79 E-value=0.0027 Score=58.18 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=52.7
Q ss_pred EEEEEEcCCCc-EEE-EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE----EeCCeecCCCCchhhcccCCCcEEEE
Q 022228 2 MKIFVKTLKGT-SFD-VEVKPEDTVFDVKMKIETVQGSDVYPAAQQML----IYQGKVLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~-~~~-ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL----i~~GkiL~D~~tL~d~gI~~g~~I~v 73 (300)
|.|++...++. ..+ .+.....||.|++++|..+..+ +.+..+|+ --+||.|.|+.+|++|+...+++|.|
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k--~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLK--ITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhc--cCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 68888877652 333 6777889999999888776653 44544443 34799999999999999999977755
No 72
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.75 E-value=0.0073 Score=44.49 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=46.6
Q ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEE
Q 022228 8 TLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 8 tl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v 73 (300)
..+++.+.|.|.++.++.++-+..+.+.+ +..++-.|.|++|.|+-+..+.-.|+-+|..+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~---l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFG---LDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT-----GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcC---CCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 46789999999999999999999999999 8889999999999999999999999999988754
No 73
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.67 E-value=0.0021 Score=62.78 Aligned_cols=38 Identities=37% Similarity=0.524 Sum_probs=36.0
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
-.++|++|++|| |+|..|+.|-.|+-.|-+-|+.||+.
T Consensus 337 E~~AIeRL~~LG---F~r~~viqaY~ACdKNEelAAn~Lf~ 374 (378)
T TIGR00601 337 EKEAIERLCALG---FDRGLVIQAYFACDKNEELAANYLLS 374 (378)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 367999999999 99999999999999999999999985
No 74
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0024 Score=55.98 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=43.8
Q ss_pred cccccCCChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 151 s~l~~g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
..+.++..+...|.+|.+|| |+|+.++.+|+-..-|..+|.|+|++|
T Consensus 154 ~~~~~~~~~~~~v~~l~~mG---f~~~~~i~~L~~~~w~~~~a~~~~~s~ 200 (200)
T KOG0418|consen 154 GRLPDDPWDKKKVDSLIEMG---FSELEAILVLSGSDWNLADATEQLLSG 200 (200)
T ss_pred CCCCCCchhHHHHHHHHHhc---ccHHHHHHHhhccccchhhhhHhhccC
Confidence 34777889999999999999 999999999999999999999999987
No 75
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.61 E-value=0.021 Score=44.14 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=56.1
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--CeecC--------CCCchhhcccCCCcEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ--GKVLK--------DDTTLEENKVAENSFV 71 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~--GkiL~--------D~~tL~d~gI~~g~~I 71 (300)
.+|.||..+|+.+.-.+..++||++|...|.. .+ ..++...|+++ -|+|. .+.||++.||....+|
T Consensus 5 ~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~---~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 5 VKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LK---ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CC---CCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 57999999999999999999999999999964 34 44678888854 47885 3679999999988777
Q ss_pred EE
Q 022228 72 VI 73 (300)
Q Consensus 72 ~v 73 (300)
+|
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 65
No 76
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=96.59 E-value=0.0062 Score=40.79 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=35.9
Q ss_pred hHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 159 LEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 159 ~e~~I~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
.++.|..|.+| . ++++.|++.|++.-||.|+|++.|+.|
T Consensus 2 ~~~~v~~L~~mFP~---l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 2 NDEALHDLKDMFPN---LDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 36789999999 6 899999999999999999999999876
No 77
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0099 Score=53.07 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=57.5
Q ss_pred CEEEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeCC-----eec-CCCCchhhcccCCCcEEE
Q 022228 1 MMKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQML-IYQG-----KVL-KDDTTLEENKVAENSFVV 72 (300)
Q Consensus 1 mM~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL-i~~G-----kiL-~D~~tL~d~gI~~g~~I~ 72 (300)
|++|.|.+...+ .++..+..+.||.+||.|++..+| .+++.++| +|.| -.| +++..|..|+..+|-.||
T Consensus 1 ~v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G---~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rih 77 (234)
T KOG3206|consen 1 MVRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTG---TEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIH 77 (234)
T ss_pred CeEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhC---CCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEE
Confidence 567878654332 245567899999999999999999 88999999 5665 345 456799999999999999
Q ss_pred EEEe
Q 022228 73 IMLT 76 (300)
Q Consensus 73 v~v~ 76 (300)
|+=.
T Consensus 78 viD~ 81 (234)
T KOG3206|consen 78 VIDS 81 (234)
T ss_pred EEec
Confidence 8754
No 78
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.42 E-value=0.032 Score=42.66 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=58.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC---CCCchhhcccCCCcEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLK---DDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL~---D~~tL~d~gI~~g~~I~v~ 74 (300)
.+|.||..+|+.+.-.+..++++.+|...|..+ | ++....+|+ |=-|.+. .+.+|.+.|+....+|+|-
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~---~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-G---YPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-C---CCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 579999999999999999999999999999764 6 667788886 6678774 2569999999998888763
No 79
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.18 E-value=0.039 Score=47.73 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=54.2
Q ss_pred EEEEEEcCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEe-CCeec--CCCCchhhcccCCCc----
Q 022228 2 MKIFVKTLKG----TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQ-MLIY-QGKVL--KDDTTLEENKVAENS---- 69 (300)
Q Consensus 2 M~I~VKtl~g----~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~q-kLi~-~GkiL--~D~~tL~d~gI~~g~---- 69 (300)
|.|+|++++| .++.+.+..+.||.+|+.+|....+ ++...+ .|.+ .++.| .++..++++.-...+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~---~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~ 77 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLP---IPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFI 77 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcC---CCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCce
Confidence 6899999999 5899999999999999999999998 766663 3444 34444 556677777554443
Q ss_pred EEEEEEecCC
Q 022228 70 FVVIMLTKNK 79 (300)
Q Consensus 70 ~I~v~v~k~~ 79 (300)
+|.|+++...
T Consensus 78 ~l~l~~rl~G 87 (162)
T PF13019_consen 78 TLRLSLRLRG 87 (162)
T ss_pred EEEEEEeccC
Confidence 4555555544
No 80
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.90 E-value=0.034 Score=42.15 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=47.4
Q ss_pred CEEEEEEcCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCchhhcccCCCcEE
Q 022228 1 MMKIFVKTLK------G-TSFDVEVKPEDTVFDVKMKIETVQGSDVYPA--AQQMLIYQGKVLKDDTTLEENKVAENSFV 71 (300)
Q Consensus 1 mM~I~VKtl~------g-~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~--~~qkLi~~GkiL~D~~tL~d~gI~~g~~I 71 (300)
||+|+|+.+. | ....+++....||.+|++.|...... +.. ....+..+|+...+ ++-|++||.|
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~--l~~~~~~~~vavN~~~v~~-----~~~l~dgDeV 73 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPS--LEEVRSCCVLALNEEYTTE-----SAALKDGDEL 73 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChh--HHHHhhCcEEEECCEEcCC-----CcCcCCCCEE
Confidence 7999999764 4 45677888889999999999766420 111 22346678888753 3457889999
Q ss_pred EEE
Q 022228 72 VIM 74 (300)
Q Consensus 72 ~v~ 74 (300)
.++
T Consensus 74 ai~ 76 (82)
T PLN02799 74 AII 76 (82)
T ss_pred EEe
Confidence 886
No 81
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=95.29 E-value=0.14 Score=37.94 Aligned_cols=59 Identities=20% Similarity=0.412 Sum_probs=44.1
Q ss_pred CEEEEEEcCCCc--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 1 MMKIFVKTLKGT--SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 1 mM~I~VKtl~g~--~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
||+|+|. |+ ...++++...||.+|.+.+ + ++.....+..+|+++.. ++-+++||.|.++
T Consensus 4 mm~v~vn---g~~~~~~~~~~~~~tv~~ll~~l----~---~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii 64 (70)
T PRK08364 4 MIRVKVI---GRGIEKEIEWRKGMKVADILRAV----G---FNTESAIAKVNGKVALE-----DDPVKDGDYVEVI 64 (70)
T ss_pred EEEEEEe---ccccceEEEcCCCCcHHHHHHHc----C---CCCccEEEEECCEECCC-----CcCcCCCCEEEEE
Confidence 4566664 44 5678888889999998765 5 66677788899999854 5568889998876
No 82
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=95.08 E-value=0.024 Score=40.26 Aligned_cols=23 Identities=39% Similarity=0.715 Sum_probs=19.5
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHH
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRA 185 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrA 185 (300)
...|.++++|| |+|+.|+.|||-
T Consensus 10 ~~lVd~F~~mG---F~~dkVvevlrr 32 (55)
T PF09288_consen 10 KDLVDQFENMG---FERDKVVEVLRR 32 (55)
T ss_dssp HHHHHHHHHHT-----HHHHHHHHHH
T ss_pred HHHHHHHHHcC---CcHHHHHHHHHH
Confidence 57899999999 999999999985
No 83
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=94.95 E-value=0.034 Score=52.93 Aligned_cols=38 Identities=34% Similarity=0.474 Sum_probs=36.1
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
.++|.+|++|| |+|.-|+.|-=|+..|=+-|++||+.-
T Consensus 299 ~eAIeRL~alG---F~ralViqayfACdKNEelAAN~Ll~~ 336 (340)
T KOG0011|consen 299 KEAIERLEALG---FPRALVIQAYFACDKNEELAANYLLSH 336 (340)
T ss_pred HHHHHHHHHhC---CcHHHHHHHHHhcCccHHHHHHHHHhh
Confidence 67999999999 999999999999999999999999964
No 84
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.80 E-value=0.04 Score=55.01 Aligned_cols=41 Identities=34% Similarity=0.524 Sum_probs=37.1
Q ss_pred CChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 157 NNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
..|..-.++|-+|| | +|+.-++||+|.+.+.++|||-|+.+
T Consensus 452 ~r~q~QLeQL~~MG---F~nre~nlqAL~atgGdi~aAverll~s 493 (493)
T KOG0010|consen 452 ERYQTQLEQLNDMG---FLDREANLQALRATGGDINAAVERLLGS 493 (493)
T ss_pred HHHHHHHHHHHhcC---CccHHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 45677799999999 9 99999999999999999999999853
No 85
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=94.60 E-value=0.061 Score=41.63 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=31.6
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 022228 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201 (300)
Q Consensus 163 I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GI 201 (300)
|+.+.+.| |.++.|.+||++.-+++..|..|++++.
T Consensus 1 i~~~~~~g---~~~~~v~~aL~~tSgd~~~a~~~vl~~l 36 (87)
T PF11626_consen 1 IKHYEELG---YSREFVTHALYATSGDPELARRFVLNFL 36 (87)
T ss_dssp -HHHHHHT---B-HHHHHHHHHHTTTBHHHHHHHHHHCH
T ss_pred CchHHHhC---CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 56678899 9999999999999999999999999883
No 86
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=94.57 E-value=0.069 Score=40.43 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=46.1
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhc-ccCCCcEEEEEE
Q 022228 18 VKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN-KVAENSFVVIML 75 (300)
Q Consensus 18 V~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~-gI~~g~~I~v~v 75 (300)
|.++++|.+|++.|...... ..-....|.|+|+.|+|...|+++ |++++..|.|+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t--~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPET--CYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccc--cceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 56789999999999877541 346778999999999999899888 588899888774
No 87
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=94.48 E-value=0.1 Score=37.39 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=40.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
|+|+|. |+. ++++.+.|+.+||.++... .=.+||+|-..+++. -+++||.|+++.|
T Consensus 1 M~I~vN---~k~--~~~~~~~tl~~lr~~~k~~---------~DI~I~NGF~~~~d~-----~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKVN---EKE--IETEENTTLFELRKESKPD---------ADIVILNGFPTKEDI-----ELKEGDEVFLIKK 56 (57)
T ss_pred CEEEEC---CEE--EEcCCCcCHHHHHHhhCCC---------CCEEEEcCcccCCcc-----ccCCCCEEEEEeC
Confidence 566663 554 6677888999999875432 226799999887754 5677999988753
No 88
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.25 E-value=0.29 Score=36.39 Aligned_cols=68 Identities=25% Similarity=0.265 Sum_probs=51.3
Q ss_pred EEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe----CC--eecCCCCchhhcccCCCcEEEEEE
Q 022228 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY----QG--KVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 6 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~----~G--kiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+.++|...+++|+.+.|+.+|=++|+.+.+. ...+-.-|.| +| .-|+.+++|.+...+.+....+..
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l--~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~f 74 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGL--KEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYF 74 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTT--SSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCC--CCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEE
Confidence 56789999999999999999999999999983 3455667877 23 457889999999777334333333
No 89
>PRK06437 hypothetical protein; Provisional
Probab=94.11 E-value=0.32 Score=35.73 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=43.5
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 10 KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 10 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
.++...++++...||.+|-+. .+ ++.....+..+|+++. .++-|++||.|.++-
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lg---i~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LG---LDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cC---CCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 456677888888999988765 46 7788889999999997 566788999998764
No 90
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.62 E-value=0.075 Score=52.61 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=51.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 15 DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 15 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
.++...+.|-.+|..+|.++.| ++-...|.|.+||+|.-.+||.+-|++.+..+.|++.
T Consensus 53 l~k~sL~i~Gselqa~iakklg---i~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLG---IKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHHHcC---CchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 4566677788899999999999 8888999999999999999999999998887777665
No 91
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=93.24 E-value=0.26 Score=32.94 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=30.8
Q ss_pred HHHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 160 EGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 160 e~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
++.|.+.|+. | -+++.++.-|+.+.+|.++||+.-+.
T Consensus 1 ~e~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 1 DEKIAQFMSITG---ADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHHHH----SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHC---cCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4678999987 7 79999999999999999999987654
No 92
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=93.12 E-value=0.12 Score=49.93 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=58.5
Q ss_pred EEEEEEcC--CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC--CchhhcccCCCcEEEE
Q 022228 2 MKIFVKTL--KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD--TTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl--~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~--~tL~d~gI~~g~~I~v 73 (300)
|.++|-+. ..++|.|+|..+.....|+..+....| +..+..-|||+++.|.++ ..|..||++.+++|.+
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g---~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~l 73 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTG---IVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLAL 73 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhC---cccchhhcccCCCccccchhhhhhhcccccceeEec
Confidence 45555444 667889999999999999999999999 889999999999999765 5899999999998854
No 93
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=93.07 E-value=0.28 Score=35.36 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=37.1
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
...+|++|-|.-|+ +..+++...|+-++++||.||+-||+=
T Consensus 5 ~rk~VQ~iKEiv~~-hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 5 SRKTVQSIKEIVGC-HSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 46789999999766 899999999999999999999999974
No 94
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=92.74 E-value=0.14 Score=35.02 Aligned_cols=37 Identities=24% Similarity=0.493 Sum_probs=28.9
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl 198 (300)
.++.+.-|+.+| |.+.++.+|++....+++.-+|.++
T Consensus 3 ~~d~~~AL~~LG---y~~~e~~~av~~~~~~~~~~~e~~i 39 (47)
T PF07499_consen 3 LEDALEALISLG---YSKAEAQKAVSKLLEKPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHSTTS-HHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhhcCCCCCHHHHH
Confidence 478899999999 9999999999998755555566654
No 95
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=92.68 E-value=0.59 Score=35.83 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=37.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG 51 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G 51 (300)
+||+++ + ++.|.|.++.+..+|+++|.++.+ ++.+..+|.|+.
T Consensus 5 vKV~f~---~-tIaIrvp~~~~y~~L~~ki~~kLk---l~~e~i~LsYkd 47 (80)
T cd06406 5 VKVHFK---Y-TVAIQVARGLSYATLLQKISSKLE---LPAEHITLSYKS 47 (80)
T ss_pred EEEEEE---E-EEEEEcCCCCCHHHHHHHHHHHhC---CCchhcEEEecc
Confidence 455555 3 899999999999999999999999 989999999964
No 96
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=92.44 E-value=0.65 Score=34.42 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=41.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCC-CCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 13 SFDVEVKPEDTVFDVKMKIETVQGS-DVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 13 ~~~ieV~~~~TV~~LK~kI~~~~g~-~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
...++++...||.+|.+.+....+. .........+..+|+... .++-|++||.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ 74 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAII 74 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEe
Confidence 4667887889999999999887541 001234566778999987 34568899999887
No 97
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=92.37 E-value=0.11 Score=34.27 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=24.2
Q ss_pred hhhhCcHHHHHHHHHHHhCCCchHHHHhc
Q 022228 266 DFLRNSPQFQVLRAMVQANPQLFPCFKSW 294 (300)
Q Consensus 266 ~~Lr~~pqf~~lR~~vq~nP~~L~~~lq~ 294 (300)
..|+ +|+|+++++-+++||+++..+++.
T Consensus 6 ~~l~-~P~~~~~l~~~~~nP~~~~~~~~~ 33 (41)
T smart00727 6 LRLQ-NPQVQSLLQDMQQNPDMLAQMLQE 33 (41)
T ss_pred HHHc-CHHHHHHHHHHHHCHHHHHHHHHh
Confidence 3444 999999999999999999999873
No 98
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=91.79 E-value=0.66 Score=33.55 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=42.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+| +|+.+.+ + ..||.+|.+.+ + +......+-++|+++.. ....+.-+++||.|-++-
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~---~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----D---YEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILS 60 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----C---CCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEE
Confidence 45655 5777776 3 35899888764 5 55666777899999863 334566789999998864
No 99
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.47 E-value=0.24 Score=49.15 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=38.7
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCCc
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP~~ 204 (300)
...|.+|+.|| |++-..+.||++.-||.|.|.++|+--++..
T Consensus 430 ~~~la~Lv~mG---F~e~~A~~ALe~~gnn~~~a~~~L~~s~~n~ 471 (568)
T KOG2561|consen 430 GISLAELVSMG---FEEGKARSALEAGGNNEDTAQRLLSASVANE 471 (568)
T ss_pred hhhHHHHHHhc---cccchHHHHHHhcCCcHHHHHHHHHHhCCCC
Confidence 45799999999 9999999999999999999999999888753
No 100
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=91.01 E-value=0.71 Score=35.86 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=38.6
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY 49 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~ 49 (300)
.+++|+.+|+.+.+.+.+++.+.+|+..|.++.|.+........|.|
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 46788999999999999999999999999999993312225777777
No 101
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=0.33 Score=49.04 Aligned_cols=40 Identities=30% Similarity=0.582 Sum_probs=35.2
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcC-ChHHHHHHHHhCCC
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLYSGIP 202 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyLl~GIP 202 (300)
..+|.+|++|| |+.+.+.|||-+..| +-+.|+.||+-.+-
T Consensus 559 qs~I~qL~~mG---fp~~~~~rAL~~tgNqDaEsAMNWLFqHMd 599 (749)
T COG5207 559 QSLIRQLVDMG---FPEEDAARALGITGNQDAESAMNWLFQHMD 599 (749)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHhhccCcchHHHHHHHHhhcc
Confidence 45899999999 999999999998766 68899999998853
No 102
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=89.46 E-value=2.8 Score=32.70 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=42.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--e--CCe-ecC-CCCchhhcccCCCcEEEEEEec
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--Y--QGK-VLK-DDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~--~Gk-iL~-D~~tL~d~gI~~g~~I~v~v~k 77 (300)
..+...+...+||..+++.+.+... + ..+.||- | ++. .|. .+.||.|.+|.+|-.|++-.+.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~---i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFN---I-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT-----TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhC---C-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 3577789999999999999999988 8 6778884 2 232 454 4579999999999988776654
No 103
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=89.37 E-value=4 Score=35.21 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=51.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeC---C---eecCCCCchhhcccC-CCcEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA-AQQMLIYQ---G---KVLKDDTTLEENKVA-ENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~qkLi~~---G---kiL~D~~tL~d~gI~-~g~~I~v 73 (300)
+.|.|..++|....+.++.+.||.+|.+.|+.+.| +.. ...-|.+. + ..|+...+|.+...+ ....+++
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~---l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~f 80 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLG---IRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYF 80 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhC---CCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEE
Confidence 56888889999999999999999999999999999 532 33344431 2 356777788887665 2334444
Q ss_pred EE
Q 022228 74 ML 75 (300)
Q Consensus 74 ~v 75 (300)
.+
T Consensus 81 r~ 82 (207)
T smart00295 81 RV 82 (207)
T ss_pred EE
Confidence 33
No 104
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=89.29 E-value=2.3 Score=31.86 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=41.7
Q ss_pred Cc-EEEEEeCCC-CCHHHHHHHHHHHhCCCCCC--CCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 11 GT-SFDVEVKPE-DTVFDVKMKIETVQGSDVYP--AAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 11 g~-~~~ieV~~~-~TV~~LK~kI~~~~g~~~ip--~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
|+ ...+++..+ .||.+|++.+.+..+. +- .....+..+|+.+.+ +.-|++||.|.++
T Consensus 14 g~~~~~~~~~~~~~tv~~L~~~L~~~~p~--l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 14 GTDEETLELPDESTTVGELKEHLAKEGPE--LAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFI 74 (80)
T ss_pred CCCeEEEECCCCCcCHHHHHHHHHHhCch--hhhhccceEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 44 357888876 8999999999888641 11 134566789998875 4578889999887
No 105
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=89.15 E-value=0.12 Score=49.08 Aligned_cols=62 Identities=24% Similarity=0.432 Sum_probs=0.0
Q ss_pred EEEEEEcCCCcEEEEEeC---C--CCCHHHHHHHHHH----------HhCCCCCCCCCeE-----EEeCCeecCCCCchh
Q 022228 2 MKIFVKTLKGTSFDVEVK---P--EDTVFDVKMKIET----------VQGSDVYPAAQQM-----LIYQGKVLKDDTTLE 61 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~---~--~~TV~~LK~kI~~----------~~g~~~ip~~~qk-----Li~~GkiL~D~~tL~ 61 (300)
+.|++|.+.+-.+.|.+. + +.+|.+||..++. +.+ +|.+.+| |+|+.|.+.|.++|.
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~---vp~dKik~~~~~lL~~kkPv~~~ktl~ 155 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETR---VPLDKIKNFRCRLLYKKKPVGDSKTLA 155 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhccccccccccc---CCHHHhhhhhhhheecCccCCCcCcHH
Confidence 457777776665555433 2 5789999999999 777 9999999 999999999999988
Q ss_pred hcccC
Q 022228 62 ENKVA 66 (300)
Q Consensus 62 d~gI~ 66 (300)
++.-.
T Consensus 156 e~l~~ 160 (309)
T PF12754_consen 156 EVLAD 160 (309)
T ss_dssp -----
T ss_pred HHHhc
Confidence 87433
No 106
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=88.86 E-value=0.58 Score=48.58 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=36.1
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcC-ChHHHHHHHHhCCCC
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLYSGIPE 203 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyLl~GIP~ 203 (300)
+..|.+|++|| |+.+.|.|||-..-| +.+.|..||+.-+-+
T Consensus 572 ~s~i~qL~~MG---Fp~eac~rAly~tgN~~aEaA~NWl~~HMdD 613 (763)
T KOG0944|consen 572 RSVISQLVEMG---FPEEACRRALYYTGNSGAEAASNWLMEHMDD 613 (763)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHhhhcCccHHHHHHHHHHhccC
Confidence 56799999999 999999999999844 889999999988643
No 107
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=88.79 E-value=0.15 Score=51.35 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=36.5
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
.|..++.|++|| |.-.+|++||--..||.+|+|+|.++
T Consensus 621 dE~~~~Slle~G---ln~n~~Rkal~~~n~d~~r~V~w~~N 658 (749)
T COG5207 621 DESKARSLLENG---LNPNLCRKALMDMNTDSKRRVVWCIN 658 (749)
T ss_pred cHHHHHHHHHcC---CCHHHHHHHHHHccCCchheEEEEEe
Confidence 478899999999 99999999999999999999999999
No 108
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=88.77 E-value=2.9 Score=31.99 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=41.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCchhhcccCCCcEEEEEE
Q 022228 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY-QGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 11 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~-~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
+..+.++++...||+++-+. .| +|..+..+|+ +|+...- +|-+++|+.|.|.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LG---VP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LG---VPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cC---CChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 45678899999999987654 68 9999998875 8887654 36788999998863
No 109
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=88.57 E-value=1.8 Score=33.33 Aligned_cols=61 Identities=8% Similarity=0.201 Sum_probs=43.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+| +|+.+.+ +...||.+|-+. .+ ++....-+-++|.++.- ....++-+++||.|.++.
T Consensus 19 m~I~V---NG~~~~~--~~~~tl~~LL~~----l~---~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 19 ITISI---NDQSIQV--DISSSLAQIIAQ----LS---LPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred EEEEE---CCeEEEc--CCCCcHHHHHHH----cC---CCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEE
Confidence 55544 5776544 567788877664 35 66777778899999943 345666799999998874
No 110
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=88.44 E-value=1.1 Score=32.91 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=47.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 13 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
...+.+....||.+|.+.+....... .......+..+|+.+.+ .-.+.-+++||.|.++-
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~-~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPEL-ALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGG-HTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhcccc-ccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 66788899999999999998886411 12367888899999988 36666788999998873
No 111
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=87.86 E-value=1.6 Score=31.65 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=43.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+| +|+.+.+ ....||.+|-+. .+ ++.....+.++|.++..+.- ..+ +++||.|-++.
T Consensus 1 m~i~v---NG~~~~~--~~~~tl~~ll~~----l~---~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 1 MIVVV---NEEQVEV--DEQTTVAALLDS----LG---FPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVT 60 (65)
T ss_pred CEEEE---CCEEEEc--CCCCcHHHHHHH----cC---CCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEe
Confidence 45655 5776555 467788877654 46 77889999999998865443 245 89999998864
No 112
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=87.63 E-value=3.2 Score=31.77 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=47.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeCCe----e-cCCCCchhh----cccCCCcEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA-AQQMLIYQGK----V-LKDDTTLEE----NKVAENSFV 71 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~qkLi~~Gk----i-L~D~~tL~d----~gI~~g~~I 71 (300)
|+|++. .+|..+.+.+.++.+..+|+++|.++.+ +.. ....|-|..- + |..+.-|.+ |.....++|
T Consensus 1 ~~vK~~-~~~d~~r~~l~~~~~~~~L~~~i~~r~~---~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v 76 (82)
T cd06407 1 VRVKAT-YGEEKIRFRLPPSWGFTELKQEIAKRFK---LDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTI 76 (82)
T ss_pred CEEEEE-eCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeE
Confidence 345554 4678899999999999999999999988 543 5677777431 1 233333444 344455666
Q ss_pred EEEEe
Q 022228 72 VIMLT 76 (300)
Q Consensus 72 ~v~v~ 76 (300)
.+.+.
T Consensus 77 ~l~v~ 81 (82)
T cd06407 77 RLLVH 81 (82)
T ss_pred EEEee
Confidence 66553
No 113
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=87.53 E-value=2.6 Score=34.80 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=49.4
Q ss_pred EEcCCCcEEE---E-EeCC-CCCHHHHHHHHHHHhCC-------CCCCCCCeEEEeC-----------------Ceec--
Q 022228 6 VKTLKGTSFD---V-EVKP-EDTVFDVKMKIETVQGS-------DVYPAAQQMLIYQ-----------------GKVL-- 54 (300)
Q Consensus 6 VKtl~g~~~~---i-eV~~-~~TV~~LK~kI~~~~g~-------~~ip~~~qkLi~~-----------------GkiL-- 54 (300)
||+..-+.+. + .|+. +.||++|++.+.+.... ..+.-+.+||++. ..+|
T Consensus 6 IkSFeyRn~K~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~ 85 (122)
T PF10209_consen 6 IKSFEYRNVKNLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDV 85 (122)
T ss_pred EecccCCceeeeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeec
Confidence 4555544433 4 4787 89999999998876431 1134456777753 2567
Q ss_pred -CCCCchhhcccCCCcEEEEEEe
Q 022228 55 -KDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 55 -~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
+++++|.+|||.+...|-++.+
T Consensus 86 ~~~~~tL~~~gv~nETEiSfF~~ 108 (122)
T PF10209_consen 86 SDDDKTLKELGVENETEISFFNM 108 (122)
T ss_pred CCCCCcHHHcCCCccceeeeeCH
Confidence 7788999999999998887754
No 114
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=87.43 E-value=3 Score=31.65 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=40.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCC---CCCC-----CCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETVQGS---DVYP-----AAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~~g~---~~ip-----~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
....+++. ..||.+|.+.|.+++.. ..+. .....+..+|+..+++.. .-|++||.|.++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEe
Confidence 35677776 88999999999887541 0010 123667779988765532 568999999887
No 115
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=87.13 E-value=3.2 Score=30.60 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=52.1
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 10 KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI-YQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 10 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi-~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
+|+-..++.+....+--+..+--+..+...-|++...|- -+|.+|+-+++++|||+..+-++++.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 577788888888887777777666665332567766664 4799999999999999999999887664
No 116
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=86.87 E-value=1.8 Score=33.51 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=43.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 14 FDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 14 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
+...++-..++..||..++.+.+ +.-+.-.+......|+++++|-|-+|+-...|.+.+--
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~---~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi 65 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLG---ISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH----S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhC---CCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEE
Confidence 44567778899999999999999 66788888888888999999999999988888887654
No 117
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=86.54 E-value=3.2 Score=30.85 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=37.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG 51 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G 51 (300)
++|+++. ++..+.+.+..+.|..+|+.+|..+.+ +.....+|-|..
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~---~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFG---LDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhC---CCCCCeEEEEEC
Confidence 4566664 678888999999999999999999998 656788888863
No 118
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=86.31 E-value=2.4 Score=31.71 Aligned_cols=64 Identities=22% Similarity=0.100 Sum_probs=46.5
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--C--eecCCCCchhhcccCCCcEEEE
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ--G--KVLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~--G--kiL~D~~tL~d~gI~~g~~I~v 73 (300)
+.|-..+|+.-.+.|.+..||.++-.++.++.| +.++...|.+. + +.++.+.... +-.+..|.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~---l~~~~~~v~~~~~~~~~~~~~~~d~~---~L~~~El~V 69 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRG---LNPECCDVFLLGLDEKKPLDLDTDSS---SLAGEELEV 69 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcC---CCHHHEEEEEecCCCcCCcCchhhhh---hhcCCEEEE
Confidence 456677899999999999999999999999999 77877766654 3 4454443333 334455544
No 119
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=85.47 E-value=0.44 Score=36.19 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.8
Q ss_pred C-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 174 W-DRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 174 f-~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
. ++.+++.||.-.|+|+++||.||++-
T Consensus 43 ~~~e~~i~eal~~~~fDvekAl~~Ll~~ 70 (79)
T PF08938_consen 43 VPPEEQIKEALWHYYFDVEKALDYLLSK 70 (79)
T ss_dssp C--CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 5 89999999999999999999999987
No 120
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=85.24 E-value=3.7 Score=29.46 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=42.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+| +|+.+ ++....||.+|-+. .+ ++.....+.++|+++.... -.+.-+++||.|-++.
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~lL~~----l~---~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 1 MNIQL---NGEPR--ELPDGESVAALLAR----EG---LAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVH 61 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHHh----cC---CCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEE
Confidence 45555 57755 55667888887654 46 7778888889999886432 3344588999998764
No 121
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=84.43 E-value=1.6 Score=42.58 Aligned_cols=66 Identities=24% Similarity=0.348 Sum_probs=51.4
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCchhhcccCCCcE
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLKD-DTTLEENKVAENSF 70 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL~D-~~tL~d~gI~~g~~ 70 (300)
.|.||.-+|+.....++.+.||.+|+..|.....- .....+-|+ |--|.|.| +.||++-|+.+...
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~--~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPG--DSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCC--CcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 47788889999999999999999999999988762 333456665 55788865 56999999986443
No 122
>PRK07440 hypothetical protein; Provisional
Probab=84.04 E-value=5.8 Score=29.29 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=43.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
+|+|+| +|+. +++....||.+|-+ ..+ +.....-+-++|+++.. ....++-+++||.|.++.
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~---~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQ----QLG---FNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHH----HcC---CCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEE
Confidence 366665 4765 45567788888765 345 66778888899999863 234455688999998764
No 123
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.03 E-value=1.3 Score=42.51 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=45.4
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeec-----CCCCchhhcccCCCcEEEEE
Q 022228 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY---QGKVL-----KDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~---~GkiL-----~D~~tL~d~gI~~g~~I~v~ 74 (300)
.-|...-||.+||+++..+.| +...++||+| .||.- ..++.|-.|+|.+||.+.|-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VG---vk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVG---VKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccc---cccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 445566799999999999999 8899999987 45543 33578999999999998764
No 124
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=83.82 E-value=4.7 Score=31.36 Aligned_cols=46 Identities=13% Similarity=0.240 Sum_probs=36.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGK 52 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~Gk 52 (300)
|+|.|. ..|..+.|.|.++.+..+|..+|.++.+ +. ..++|-|...
T Consensus 3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~---~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFG---FK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhC---CC-CceEEEEEcC
Confidence 455554 3678999999999999999999999999 63 5667767554
No 125
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=83.56 E-value=6.5 Score=28.00 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=39.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+| +|+.+ ++....||.+|.+.+ + +. ....+.++|+++..+. -.+.-+++||.|.++-
T Consensus 1 m~i~v---Ng~~~--~~~~~~tl~~ll~~l----~---~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 1 MDIQL---NQQTL--SLPDGATVADALAAY----G---AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQ 60 (65)
T ss_pred CEEEE---CCEEE--ECCCCCcHHHHHHhh----C---CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEe
Confidence 45555 47654 456678999888764 3 32 3456778999885432 2233488899998874
No 126
>smart00455 RBD Raf-like Ras-binding domain.
Probab=83.41 E-value=4.9 Score=29.75 Aligned_cols=51 Identities=24% Similarity=0.186 Sum_probs=42.0
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC--eecCCC
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG--KVLKDD 57 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G--kiL~D~ 57 (300)
+.|-..+|+...+.+.+..||.++-.+|.++.| +.++...|.+.| |.|+=+
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~---l~~~~~~v~~~g~~k~ldl~ 54 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRG---LNPECCVVRLRGEKKPLDLN 54 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcC---CCHHHEEEEEcCCCcceecC
Confidence 345567899999999999999999999999999 888888888754 455433
No 127
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=83.19 E-value=6.2 Score=28.54 Aligned_cols=61 Identities=10% Similarity=0.219 Sum_probs=41.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+| +|+.+.+ ....||.+|.+. .+ +......+-++++++..+ .-.++-+++||.|.++-
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~----l~---~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQ----LN---QLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHH----cC---CCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEE
Confidence 56665 4776555 566789988865 34 445667888999998532 23344588999998764
No 128
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=82.35 E-value=2.2 Score=38.13 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.4
Q ss_pred HHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 161 GAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 161 ~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
..|.+|-++ | +.=-+|..||..+-+|.|.|++||--
T Consensus 6 ~~ik~LR~~tg---a~~~~ck~AL~~~~gd~~~A~~~lr~ 42 (198)
T PRK12332 6 KLVKELREKTG---AGMMDCKKALEEANGDMEKAIEWLRE 42 (198)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 568888887 7 88899999999999999999999973
No 129
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=81.64 E-value=5.3 Score=39.45 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=57.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe----CCee--cCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY----QGKV--LKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~----~Gki--L~D~~tL~d~gI~~g~~I~v~v 75 (300)
|.+.+|.-.| ...++|+++++.+.|-.+|-.....+ +.++++.++- .|.+ +..++++.|+|++.|+.|+|-.
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n-~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVN-YSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccC-CCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 5678887666 57799999999999999987766544 7778887764 3443 3467899999999999999887
Q ss_pred e
Q 022228 76 T 76 (300)
Q Consensus 76 ~ 76 (300)
+
T Consensus 79 s 79 (571)
T COG5100 79 S 79 (571)
T ss_pred c
Confidence 4
No 130
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=80.95 E-value=2.5 Score=40.05 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 161 GAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 161 ~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
..|.+|-++ | +.=-+|..||..+-||.|.|++||--
T Consensus 6 ~~IK~LRe~Tg---agm~dCKkAL~e~~gDiekAi~~LRk 42 (290)
T TIGR00116 6 QLVKELRERTG---AGMMDCKKALTEANGDFEKAIKNLRE 42 (290)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 468888887 7 88899999999999999999999963
No 131
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=80.88 E-value=6.6 Score=28.21 Aligned_cols=56 Identities=13% Similarity=0.244 Sum_probs=40.0
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 10 KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 10 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
+|+.+ +++...||.+|.+++ + ++.+...+.++|+++..+ .-.++-|++||.|.++-
T Consensus 5 Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 5 NGEPR--EVEEGATLAELLEEL----G---LDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT 60 (65)
T ss_pred CCeEE--EcCCCCCHHHHHHHc----C---CCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 56654 445678999988764 4 556788888999998653 23334688999998763
No 132
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=80.27 E-value=2.9 Score=33.21 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=23.2
Q ss_pred EEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 46 MLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 46 kLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
.|-|.||.|.++++|++| |..++...|+++..
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl~ 34 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKLQ 34 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEec
Confidence 577999999999999999 54444444454443
No 133
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=79.21 E-value=5.1 Score=41.11 Aligned_cols=65 Identities=29% Similarity=0.378 Sum_probs=42.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe--C--Ce-ecCCC-------------CchhhcccCC
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY--Q--GK-VLKDD-------------TTLEENKVAE 67 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip------~~~qkLi~--~--Gk-iL~D~-------------~tL~d~gI~~ 67 (300)
..+.+.|-..|||.++|+||-+..-++ .| +++.-|-+ + |+ +|.|. .||.+|+|.+
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~-~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKN-TPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTT-S-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcC-CCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 457888889999999999997664322 32 33444433 2 33 56553 3799999999
Q ss_pred CcEEEEEEec
Q 022228 68 NSFVVIMLTK 77 (300)
Q Consensus 68 g~~I~v~v~k 77 (300)
|.+|.++.+.
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9998887654
No 134
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=78.69 E-value=14 Score=37.21 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=55.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCeEEE-eCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDV---YPAAQQMLI-YQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~---ip~~~qkLi-~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
.+|+|... .+..++-+..+..|.+|-..|-+..+.+. .....-.|. .+|..|+.+++|.+.+|.||+.+++.-+
T Consensus 3 ~RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 3 CRVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 46788754 34577778889999999999998887320 112233443 4788999999999999999999988753
No 135
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.98 E-value=3.4 Score=38.70 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=30.0
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHh-cCChHHHHHHH-HhCC
Q 022228 163 IQQILDMGGGTWDRDTVVRALRAA-YNNPERAVEYL-YSGI 201 (300)
Q Consensus 163 I~~i~eMG~~~f~r~qv~~ALrAa-fnNpdrAvEyL-l~GI 201 (300)
++.+|+|| |++..+.+||-.. .-+.+-|++|| +.+.
T Consensus 4 ~~~l~~mg---fps~k~e~al~~~~n~~~e~al~wl~~d~~ 41 (290)
T KOG2689|consen 4 AQSLEEMG---FPSGKAEKALAVYGNRGIEQALDWLEMDHA 41 (290)
T ss_pred HHHHHHhc---CchhhhhhHhhhhccccHHHHHHHHHhccc
Confidence 38899999 9999999999875 44788999999 6553
No 136
>CHL00098 tsf elongation factor Ts
Probab=77.68 E-value=3.9 Score=36.67 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=32.1
Q ss_pred HHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 161 GAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 161 ~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
..|.+|-++ | ..=-+|..||..+-||.|.|++||--
T Consensus 3 ~~ik~LR~~Tg---ag~~dck~AL~e~~gd~~~A~~~Lr~ 39 (200)
T CHL00098 3 ELVKELRDKTG---AGMMDCKKALQEANGDFEKALESLRQ 39 (200)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467888887 7 88899999999999999999999975
No 137
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=77.55 E-value=16 Score=26.95 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=41.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|.+. |+. +++....||.+|-.. .+ ++.+..-+.++|.++..+. -.+.-++++|.|-++.
T Consensus 3 m~i~~n---g~~--~e~~~~~tv~dLL~~----l~---~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~ 63 (68)
T COG2104 3 MTIQLN---GKE--VEIAEGTTVADLLAQ----LG---LNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVR 63 (68)
T ss_pred EEEEEC---CEE--EEcCCCCcHHHHHHH----hC---CCCceEEEEECCEEccchh-hhhccccCCCEEEEEE
Confidence 555443 665 455556899988654 56 7778888899999986432 3455678888887763
No 138
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=77.46 E-value=11 Score=28.01 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=35.8
Q ss_pred EEEEEEcCCCcEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC
Q 022228 2 MKIFVKTLKGTSFD-VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ 50 (300)
Q Consensus 2 M~I~VKtl~g~~~~-ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~ 50 (300)
++|+++. ++..+. +.+..+.+..+|+.+|....+ ......+|.|.
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~---~~~~~~~l~Y~ 47 (84)
T PF00564_consen 2 VRVKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFG---LLDEDFQLKYK 47 (84)
T ss_dssp EEEEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHT---TSTSSEEEEEE
T ss_pred EEEEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhC---CCCccEEEEee
Confidence 3555553 455555 899999999999999999999 66688999885
No 139
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=77.36 E-value=24 Score=26.47 Aligned_cols=54 Identities=7% Similarity=0.090 Sum_probs=33.3
Q ss_pred EEeCC-CCCHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 16 VEVKP-EDTVFDVKMKIETVQGS--DVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 16 ieV~~-~~TV~~LK~kI~~~~g~--~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
++++. ..||.+|++.|.+++.. ........++..+++...+ +.-|++||.|.++
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~ 75 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEe
Confidence 44443 47999999999887531 0012233454556655433 3358899999876
No 140
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=76.75 E-value=5.3 Score=30.85 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHH-HhCCCCCCCC----CeEEEeCCee----cCCCCchhhcccCCCcEEEEE
Q 022228 20 PEDTVFDVKMKIET-VQGSDVYPAA----QQMLIYQGKV----LKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 20 ~~~TV~~LK~kI~~-~~g~~~ip~~----~qkLi~~Gki----L~D~~tL~d~gI~~g~~I~v~ 74 (300)
...|+++|-++|-+ +.| +..- .-++||.... -..+++|+++||++|++|.|.
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg---~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLG---MNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp TT-BHHHHHHHCCCCCS-----SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred hhCcHHHHHHHHHHhccC---CCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 45799999988754 445 2221 2344443321 123478999999999988764
No 141
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=76.24 E-value=12 Score=27.23 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=41.3
Q ss_pred EEEEEEcCCCcEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPE-DTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~-~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+| +|+.+.+ ... .||.+|-+. .+ +.....-+-++|+++..+ ...++-+++||.|.++.
T Consensus 1 m~I~v---NG~~~~~--~~~~~tv~~lL~~----l~---~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 1 MNLKI---NGNQIEV--PESVKTVAELLTH----LE---LDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVT 62 (67)
T ss_pred CEEEE---CCEEEEc--CCCcccHHHHHHH----cC---CCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEE
Confidence 45555 5776544 444 578777653 45 667777788999998543 34455689999998764
No 142
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=76.20 E-value=6.2 Score=32.33 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=33.8
Q ss_pred HHHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 160 EGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 160 e~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
++.|.-+|+- | -+|+++++||+.+.|+.-.|+-||..+
T Consensus 77 ~edI~lv~~q~g---vs~~~A~~AL~~~~gDl~~AI~~L~~~ 115 (115)
T PRK06369 77 EEDIELVAEQTG---VSEEEARKALEEANGDLAEAILKLSSE 115 (115)
T ss_pred HHHHHHHHHHHC---cCHHHHHHHHHHcCCcHHHHHHHHhcC
Confidence 6778888885 7 899999999999999999999999753
No 143
>PRK09377 tsf elongation factor Ts; Provisional
Probab=76.20 E-value=4.2 Score=38.52 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=32.5
Q ss_pred HHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 161 GAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 161 ~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
..|.+|-++ | +.=-+|..||..+.||.|.|++||-.
T Consensus 7 ~~IK~LR~~Tg---agm~dCKkAL~e~~gD~ekAi~~Lrk 43 (290)
T PRK09377 7 ALVKELRERTG---AGMMDCKKALTEADGDIEKAIEWLRK 43 (290)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 568888887 7 88899999999999999999999973
No 144
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=75.52 E-value=9.2 Score=40.33 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=41.2
Q ss_pred EEEEEEcC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec
Q 022228 2 MKIFVKTL-KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVL 54 (300)
Q Consensus 2 M~I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL 54 (300)
+.|+|=.+ ++..+.+-++++.|+..|+..|...+| ++.+.|-|+|.|...
T Consensus 314 ~vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tg---ipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 314 KVVHIFSMVQATSHEYYVHADNTLHSLIERISKQTG---IPEGKQELLFEGGLS 364 (732)
T ss_pred heeEEEeeccceEEEEecChhhhHHHHHHHHHHhhC---CCCccceeeeecCcc
Confidence 34444433 566788999999999999999999999 999999999987654
No 145
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=75.27 E-value=11 Score=26.91 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=39.9
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 9 LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 9 l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
++|+.+.+ ....||.+|.+.+ + ++++...+.++|+++..+ .-.++-|++||.|-++-
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l----~---~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESL----G---LDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVT 59 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----C---CCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 45666544 5677899988753 4 556777888999998432 23345689999998764
No 146
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=74.67 E-value=11 Score=27.72 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=34.3
Q ss_pred EEEEEcCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 022228 3 KIFVKTLKGTSFDVEVK-PEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG 51 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~-~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G 51 (300)
+|+++. +|..+.+.+. .+.|..+|+.+|..+.+ ......+|-|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~---~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFG---LDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhC---CCCCcEEEEeeC
Confidence 345553 4677888888 89999999999999998 544567777753
No 147
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=74.47 E-value=17 Score=26.91 Aligned_cols=57 Identities=21% Similarity=0.091 Sum_probs=40.8
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhc
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVLKDDTTLEEN 63 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~--~GkiL~D~~tL~d~ 63 (300)
+.|...+|+...+.|.+..||.++-.++.++.+ +.++...+.. ..+.|+-+.....+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~---L~~~~~~V~~~~~~k~l~~~~d~~~L 61 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRG---LNPECCDVRLVGEKKPLDWDQDSSSL 61 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT-----CCCEEEEEEEEEEEE-TTSBGGGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcC---CCHHHEEEEEcCCCccccCCCceeee
Confidence 456667899999999999999999999999999 7677665543 45667666655543
No 148
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=74.10 E-value=4 Score=39.80 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.5
Q ss_pred cccCCChHHHHHHHHhccCCCCCHHHHHHHHH
Q 022228 153 LVAGNNLEGAIQQILDMGGGTWDRDTVVRALR 184 (300)
Q Consensus 153 l~~g~~~e~~I~~i~eMG~~~f~r~qv~~ALr 184 (300)
++..--++++|+.++.|| |.||+|+.-.|
T Consensus 315 ~~~~~p~ddvidKv~~MG---f~rDqV~a~v~ 343 (358)
T PF07223_consen 315 SGNRHPYDDVIDKVASMG---FRRDQVRATVR 343 (358)
T ss_pred ccccCcHHHHHHHHHHcC---CcHHHHHHHHH
Confidence 444556899999999999 99999987443
No 149
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=73.93 E-value=31 Score=26.77 Aligned_cols=67 Identities=21% Similarity=0.173 Sum_probs=46.3
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE------eCCeecCCCCchhhc----ccCCCcEE
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI------YQGKVLKDDTTLEEN----KVAENSFV 71 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi------~~GkiL~D~~tL~d~----gI~~g~~I 71 (300)
.|+|...+|..-.|.|+...|+.++-+.+..+.++. +...--|+ +=.+.|+|...|-++ ++..+..|
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~--~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l 80 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQ--DDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVL 80 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCC--CCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEE
Confidence 356666789999999999999999999999998842 22233333 125678888765554 45344444
No 150
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=72.94 E-value=30 Score=29.46 Aligned_cols=74 Identities=20% Similarity=0.138 Sum_probs=40.8
Q ss_pred EEEEEEcCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCC-CCCCCCe----EEEe-CCeecCCCCchhhcccCCCcEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVK-PEDTVFDVKMKIETVQGSD-VYPAAQQ----MLIY-QGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~-~~~TV~~LK~kI~~~~g~~-~ip~~~q----kLi~-~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
|||+|+. ....+.+-+. .+.||.+|-++--.++.+- ...++.. +|-| .|-+|+.+..|.+. +.+.++|+.+
T Consensus 1 mkvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~~~v~V~~l~~~dggiLd~DD~l~dV-~dd~d~liAv 78 (145)
T PF12053_consen 1 MKVTVCF-GRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPDYWVVVHHLEYTDGGILDPDDVLCDV-VDDRDQLIAV 78 (145)
T ss_dssp -EEEEEE-TTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TTS-EEEEEEE-SSS-EE-TTS-HHHH-S-TTEEEEEE
T ss_pred CeEEEEe-CCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCCceEEEeeEEecCCceeccccceeEe-ccChhhhhee
Confidence 8999995 4456777776 5589999977654433210 0223322 2332 56699888888886 5678888877
Q ss_pred Eec
Q 022228 75 LTK 77 (300)
Q Consensus 75 v~k 77 (300)
..-
T Consensus 79 ydE 81 (145)
T PF12053_consen 79 YDE 81 (145)
T ss_dssp EEE
T ss_pred ecc
Confidence 765
No 151
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=72.92 E-value=12 Score=28.16 Aligned_cols=63 Identities=24% Similarity=0.291 Sum_probs=41.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe------CCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY------QGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~------~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
++|-+-.+++.|+.+|+..|.+++.+- +|-+ ..|.. .|--|+.+-.++|. ...++.|.|+++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kL-YP~~-~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKL-YPNE-PELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHH-CCCC-CCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 567777899999999999999887642 4333 23321 34445555566664 3467888887753
No 152
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=71.91 E-value=25 Score=28.52 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=41.6
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhc--ccC-CCcEEEEEEec
Q 022228 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQ-QMLIYQGKVLKDDTTLEEN--KVA-ENSFVVIMLTK 77 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-qkLi~~GkiL~D~~tL~d~--gI~-~g~~I~v~v~k 77 (300)
+-|..+.||.+|...|..... +.+++ +-|..++.....+.+++++ .-+ ++.+|+|..+.
T Consensus 45 flVp~~~tv~~f~~~irk~l~---l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys~ 107 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQ---LRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSS 107 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhC---CCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEec
Confidence 348899999999999999887 65665 4444466555677777765 122 47788887764
No 153
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=71.60 E-value=6.6 Score=30.27 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=38.1
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCC----CCCCCCeEEEeCCe-ec------CCCCchhhcccCCCcEEEEE
Q 022228 16 VEVKPEDTVFDVKMKIETVQGSD----VYPAAQQMLIYQGK-VL------KDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~~----~ip~~~qkLi~~Gk-iL------~D~~tL~d~gI~~g~~I~v~ 74 (300)
|+|++++|+.+|-+.+++..... ++..+.-.|++.+- .| +=+++|.++ +.+|+.|+|.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 68999999999999999874300 01222334444332 12 125789999 9999998873
No 154
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=70.54 E-value=1.4 Score=30.18 Aligned_cols=20 Identities=30% Similarity=0.713 Sum_probs=13.2
Q ss_pred HHHHH-hccCCCCCHHHHHHHHHH
Q 022228 163 IQQIL-DMGGGTWDRDTVVRALRA 185 (300)
Q Consensus 163 I~~i~-eMG~~~f~r~qv~~ALrA 185 (300)
|..|- -|| |+|+++..||+.
T Consensus 6 v~~Ls~tMG---Y~kdeI~eaL~~ 26 (46)
T PF08587_consen 6 VSKLSKTMG---YDKDEIYEALES 26 (46)
T ss_dssp HHHHHCTT------HHHHHHHCCS
T ss_pred HHHHHHHhC---CCHHHHHHHHHc
Confidence 44444 499 999999999997
No 155
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=69.63 E-value=5.2 Score=38.65 Aligned_cols=66 Identities=17% Similarity=0.063 Sum_probs=53.0
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---eecC--CCCchhhcccCCCcE
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---KVLK--DDTTLEENKVAENSF 70 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G---kiL~--D~~tL~d~gI~~g~~ 70 (300)
.|.||+.+|+.+...+-.+++|..|-..+...... .+-+..||+++= |.|. .+.||.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg--~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDG--SDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcc--cccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 48899999998888888999999998877766542 567889999876 6664 467999999998765
No 156
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=69.52 E-value=43 Score=24.89 Aligned_cols=55 Identities=20% Similarity=0.163 Sum_probs=38.1
Q ss_pred EEEEcCCCc----EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-e---CC--eecCCCCc
Q 022228 4 IFVKTLKGT----SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI-Y---QG--KVLKDDTT 59 (300)
Q Consensus 4 I~VKtl~g~----~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi-~---~G--kiL~D~~t 59 (300)
|+|-..++. .-.|.|..+.|+.+|-+.+.++.+.. -.+....|+ + .| +.|.|+..
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~-~~~~~y~L~~~~~~~~~er~L~~~E~ 69 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLA-EDPSDYCLVEVEESGGEERPLDDDEC 69 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTS-SSGGGEEEEEEECTTTEEEEETTTSB
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCC-CCCCCEEEEEEEcCCCEEEEcCCCCc
Confidence 444445555 77799999999999999999999931 245566773 2 23 56766543
No 157
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=69.48 E-value=13 Score=35.83 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=45.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|+|+| +|+.+ ++....||.+|-+. .+ ++.+...+.++|+++.. ....++-|++||.|-++---.
T Consensus 1 M~I~V---NGk~~--el~e~~TL~dLL~~----L~---i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~Vg 64 (326)
T PRK11840 1 MRIRL---NGEPR--QVPAGLTIAALLAE----LG---LAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFVG 64 (326)
T ss_pred CEEEE---CCEEE--ecCCCCcHHHHHHH----cC---CCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEec
Confidence 45555 57764 45667788887654 46 77888999999999953 234556689999998876533
No 158
>PRK01777 hypothetical protein; Validated
Probab=69.35 E-value=22 Score=28.05 Aligned_cols=70 Identities=10% Similarity=-0.055 Sum_probs=42.2
Q ss_pred CEEEEEEcCC-C--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 1 MMKIFVKTLK-G--TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 1 mM~I~VKtl~-g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
||+|.|.... . ..+.+++....||.++-+...-......+.....++.-+|+...-+ .-+++||.|-++-
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d-----~~L~dGDRVeIyr 75 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLT-----DVLRDGDRVEIYR 75 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCC-----CcCCCCCEEEEec
Confidence 5888887532 2 2366788899999998766422111000212223555677766543 3577899998874
No 159
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=69.22 E-value=27 Score=31.27 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=35.1
Q ss_pred EEEEEEcCCC---cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC---CeEE--EeCCee---cCCCCchhhc
Q 022228 2 MKIFVKTLKG---TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAA---QQML--IYQGKV---LKDDTTLEEN 63 (300)
Q Consensus 2 M~I~VKtl~g---~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~---~qkL--i~~Gki---L~D~~tL~d~ 63 (300)
|+|++-..+. +.+.+-|..+.||.+|.+++..+.+ ++.+ .+|| ++++|+ +..+..|.++
T Consensus 21 ~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~---~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 21 FKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVG---FSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT-------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcC---CCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 4555553332 2477889999999999999999988 5443 5565 467765 6778888876
No 160
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=68.73 E-value=38 Score=27.05 Aligned_cols=76 Identities=21% Similarity=0.115 Sum_probs=46.2
Q ss_pred EEEEEcCC-CcEEEEEeCCCCCHHHHHHHHHHHh--CCCC-CCCC-CeEEEeCCe--ecCCCCchhhc-----ccCCCcE
Q 022228 3 KIFVKTLK-GTSFDVEVKPEDTVFDVKMKIETVQ--GSDV-YPAA-QQMLIYQGK--VLKDDTTLEEN-----KVAENSF 70 (300)
Q Consensus 3 ~I~VKtl~-g~~~~ieV~~~~TV~~LK~kI~~~~--g~~~-ip~~-~qkLi~~Gk--iL~D~~tL~d~-----gI~~g~~ 70 (300)
.|.|...+ ...+.+.+++++|+.+|.+.+-.+. ..+. -+.+ +..|--.|+ .|..+..|.+| .++.+..
T Consensus 19 ~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~ 98 (108)
T smart00144 19 LIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGRE 98 (108)
T ss_pred EEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCC
Confidence 34454333 4569999999999999999887662 1110 1222 445544553 34555566555 3677788
Q ss_pred EEEEEecC
Q 022228 71 VVIMLTKN 78 (300)
Q Consensus 71 I~v~v~k~ 78 (300)
++|++..+
T Consensus 99 ~~L~L~~~ 106 (108)
T smart00144 99 PHLVLMTL 106 (108)
T ss_pred ceEEEEec
Confidence 88877643
No 161
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=68.69 E-value=10 Score=37.79 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=59.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCC---CCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQML--IYQGKVLKD---DTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL--i~~GkiL~D---~~tL~d~gI~~g~~I~v~v~ 76 (300)
.+|.||..+|..|.-.+..++-+..+|..|....+ +.....-| .|-.|+..| +++|.++.+.+...|+|+-+
T Consensus 315 ~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~---i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk 391 (506)
T KOG2507|consen 315 VRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQT---IGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPK 391 (506)
T ss_pred eEEEEecCCccchhhcCCcchHHHHHHHHHHhccc---ccccceeeccccccccccchhhhhhHHHhccCCcceEEEEec
Confidence 46889999999999889888889999999987777 55666666 588888844 47999999999888877765
Q ss_pred cC
Q 022228 77 KN 78 (300)
Q Consensus 77 k~ 78 (300)
++
T Consensus 392 ~r 393 (506)
T KOG2507|consen 392 KR 393 (506)
T ss_pred CC
Confidence 54
No 162
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=68.26 E-value=47 Score=24.77 Aligned_cols=66 Identities=23% Similarity=0.241 Sum_probs=41.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCC----eecCCCC-chhh--cccCCCcEEEEEEec
Q 022228 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQG----KVLKDDT-TLEE--NKVAENSFVVIMLTK 77 (300)
Q Consensus 11 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~G----kiL~D~~-tL~d--~gI~~g~~I~v~v~k 77 (300)
+....|.|..++|..+|-..+.++.+.+. .+....|+ +.+ +.|.|+. .+.- .....+....+++++
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~-~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~~~~~F~lr~ 86 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDD-DPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQREDLRFLLRK 86 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcC-CcccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCCCcEEEEEec
Confidence 55677999999999999999999999431 35566664 222 4665554 4431 233344445555543
No 163
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=66.80 E-value=16 Score=30.13 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=43.3
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhc---ccCCCcEEEEEEe
Q 022228 17 EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN---KVAENSFVVIMLT 76 (300)
Q Consensus 17 eV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~---gI~~g~~I~v~v~ 76 (300)
=|..+.||.+|...|..+.+ +.+++.-|..++.++..+.+++++ .-.++.+|++..+
T Consensus 46 lVP~d~tV~qF~~iIRkrl~---l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALG---TSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcC---CChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 58899999999999999998 878885555567666777788776 2245678887664
No 164
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=66.49 E-value=19 Score=27.45 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=32.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC
Q 022228 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ 50 (300)
Q Consensus 13 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~ 50 (300)
++.|.+.+..+..+|..+|+++.. .+++..+|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~---l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALP---QQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhc---CChhhcEEEec
Confidence 566788999999999999999999 89999999995
No 165
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=65.99 E-value=13 Score=30.49 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=32.2
Q ss_pred HHHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 022228 160 EGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (300)
Q Consensus 160 e~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl 198 (300)
++.|.-+++- | -+|+++++||+.+.|+.-.|+-||.
T Consensus 79 ~eDI~lV~eq~g---vs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 79 EDDIELVMKQCN---VSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred HHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 5678888885 7 8999999999999999999999984
No 166
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=65.88 E-value=27 Score=27.50 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=45.6
Q ss_pred EEEEEEcC-CCcEEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCC-CeEEEeCCe--ecCCCCchhhc-----ccCCCcE
Q 022228 2 MKIFVKTL-KGTSFDVEVKPEDTVFDVKMKIETVQ--GSDVYPAA-QQMLIYQGK--VLKDDTTLEEN-----KVAENSF 70 (300)
Q Consensus 2 M~I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~--g~~~ip~~-~qkLi~~Gk--iL~D~~tL~d~-----gI~~g~~ 70 (300)
+.|.|... .+..+.|.|+.+.|+.+|...+-.+. +....... +..|--.|+ -|..+..|.+| .++.+..
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 46677766 56679999999999999999887662 21101111 455544553 46677788887 3566667
Q ss_pred EEEEEec
Q 022228 71 VVIMLTK 77 (300)
Q Consensus 71 I~v~v~k 77 (300)
++|++..
T Consensus 97 ~~L~Lv~ 103 (106)
T PF00794_consen 97 PHLVLVH 103 (106)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 7776654
No 167
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=65.87 E-value=8.6 Score=34.37 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcCCh
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNP 190 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNp 190 (300)
..+++|..|+.+| |.+.++.+|++...++-
T Consensus 143 ~~~ea~~AL~~LG---y~~~ea~~al~~v~~~~ 172 (196)
T PRK13901 143 KFKELEQSIVNMG---FDRKLVNSAIKEIMLLD 172 (196)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHhcch
Confidence 4688999999999 99999999999876643
No 168
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.36 E-value=18 Score=33.98 Aligned_cols=69 Identities=9% Similarity=0.241 Sum_probs=51.8
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCC---CCchhhcccCCCcEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQML--IYQGKVLKD---DTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL--i~~GkiL~D---~~tL~d~gI~~g~~I~v 73 (300)
..|.||..+|+++...+....|+.+|+..|....+.+ .+-..| -|-.+.+.+ .++|..+++....+|++
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~---~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDG---LDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCC---CCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 3688998899999999999999999999999998832 222233 244455532 36899999988777654
No 169
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=64.95 E-value=11 Score=33.32 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=25.1
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcC
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYN 188 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafn 188 (300)
..++.+..|+.+| |++.++.+|++....
T Consensus 146 ~~~e~~~aL~~LG---y~~~e~~~ai~~~~~ 173 (191)
T TIGR00084 146 ARDELFEALVSLG---YKPQEIQQALKKIKN 173 (191)
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHHhh
Confidence 3578999999999 999999999998865
No 170
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=64.92 E-value=7.8 Score=29.31 Aligned_cols=39 Identities=23% Similarity=0.511 Sum_probs=31.2
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHhcCC-hHHHHHHHHhCCC
Q 022228 163 IQQILDMGGGTWDRDTVVRALRAAYNN-PERAVEYLYSGIP 202 (300)
Q Consensus 163 I~~i~eMG~~~f~r~qv~~ALrAafnN-pdrAvEyLl~GIP 202 (300)
+--||=+|+|.|+-++-..|++-|-.+ -.+.++||+ |.|
T Consensus 21 LvALmwiGRGd~~~eew~~a~~~A~~~~~~~ta~YLl-~~p 60 (75)
T PF12616_consen 21 LVALMWIGRGDFEAEEWEEAVAEARERASARTADYLL-GTP 60 (75)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhccchHHHHHH-cCC
Confidence 556788999999999999999888554 457889996 544
No 171
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=64.72 E-value=29 Score=27.82 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=40.7
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhc---ccCCCcEEEEEEe
Q 022228 18 VKPEDTVFDVKMKIETVQGSDVYPAAQ-QMLIYQGKVLKDDTTLEEN---KVAENSFVVIMLT 76 (300)
Q Consensus 18 V~~~~TV~~LK~kI~~~~g~~~ip~~~-qkLi~~GkiL~D~~tL~d~---gI~~g~~I~v~v~ 76 (300)
|..+.||.+|...|..+.. +.+++ +-|+.++..+..+.+++++ .-.++.+|++..+
T Consensus 39 vp~~~tv~qf~~~ir~rl~---l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Ys 98 (104)
T PF02991_consen 39 VPKDLTVGQFVYIIRKRLQ---LSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTYS 98 (104)
T ss_dssp EETTSBHHHHHHHHHHHTT-----TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEEE
T ss_pred EcCCCchhhHHHHhhhhhc---CCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEec
Confidence 6788899999999999987 65554 5566688777888898776 2246778887664
No 172
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=63.62 E-value=40 Score=26.27 Aligned_cols=69 Identities=25% Similarity=0.258 Sum_probs=44.5
Q ss_pred EEEEcCCCcEEEEEeC-----CCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeC---Cee--cCCCCchhhc-----ccCC
Q 022228 4 IFVKTLKGTSFDVEVK-----PEDTVFDVKMKIETVQGSDVYPA-AQQMLIYQ---GKV--LKDDTTLEEN-----KVAE 67 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~-----~~~TV~~LK~kI~~~~g~~~ip~-~~qkLi~~---Gki--L~D~~tL~d~-----gI~~ 67 (300)
|+|+ .+|....|.+. ++.+..+|+.+|.+..+ ++. ....|.|. |.. |.++.-|.++ ....
T Consensus 3 vKv~-y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~---l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~ 78 (91)
T cd06398 3 VKVK-YGGTLRRFTFPVAENQLDLNMDGLREKVEELFS---LSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSR 78 (91)
T ss_pred EEEE-eCCEEEEEEeccccccCCCCHHHHHHHHHHHhC---CCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCC
Confidence 4444 35666666666 47999999999999998 766 67777784 322 3444444333 2335
Q ss_pred CcEEEEEEe
Q 022228 68 NSFVVIMLT 76 (300)
Q Consensus 68 g~~I~v~v~ 76 (300)
..+|.+.++
T Consensus 79 ~~~lrl~v~ 87 (91)
T cd06398 79 LNPLRIDVT 87 (91)
T ss_pred CceEEEEEE
Confidence 677777665
No 173
>PF15652 Tox-SHH: HNH/Endo VII superfamily toxin with a SHH signature
Probab=63.56 E-value=8.7 Score=30.63 Aligned_cols=30 Identities=20% Similarity=0.495 Sum_probs=26.8
Q ss_pred CCChHHHHHHHHhccCCCCCHHHHHHHHHHhcC
Q 022228 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 188 (300)
Q Consensus 156 g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafn 188 (300)
-.|+..++.+|.+-| |+++....+|+++|+
T Consensus 68 ~~Ef~~~~~eM~dAG---V~~~~~~~~l~~~Yk 97 (100)
T PF15652_consen 68 QEEFNNSYREMFDAG---VSKECRKKALKAQYK 97 (100)
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHh
Confidence 357788899999999 999999999999886
No 174
>PF09722 DUF2384: Protein of unknown function (DUF2384); InterPro: IPR024467 This domain is found predominantly in proteobacterial proteins. Its function in unknown.
Probab=63.37 E-value=18 Score=24.92 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=17.5
Q ss_pred CCCchhhhhCcHHHHHHHHHHH
Q 022228 261 GAGSLDFLRNSPQFQVLRAMVQ 282 (300)
Q Consensus 261 ~~~~l~~Lr~~pqf~~lR~~vq 282 (300)
+--|+++|++...+...++++.
T Consensus 27 g~~Plel~~t~~G~~~V~~~L~ 48 (54)
T PF09722_consen 27 GRTPLELLRTEAGAERVLDYLD 48 (54)
T ss_pred CCCHHHHHcChHHHHHHHHHHH
Confidence 3458999999888888888774
No 175
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=61.05 E-value=25 Score=26.81 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=41.1
Q ss_pred EEEEcCCC-cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 4 IFVKTLKG-TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 4 I~VKtl~g-~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~--~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
+.|++.+. ..+-|-. .++.+|+.|..++.+ ++.+..+|+. .|.+++|+.-+.. +. .+++.|++.+
T Consensus 5 ~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~---~~~~~~~lvL~eDGT~VddEeyF~t--Lp-~nT~lm~L~~ 72 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA---SSLEELLEKACDKLQ---LPEEPVRLVLEEDGTEVDDEEYFQT--LP-DNTVLMLLEK 72 (78)
T ss_dssp EEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT----SSSTCEEEETTTTCBESSCHHHCC--SS-SSEEEEEEES
T ss_pred EEEecCCCCceEeEEc---CCHHHHHHHHHHHhC---CCCcCcEEEEeCCCcEEccHHHHhh--CC-CCCEEEEECC
Confidence 34555442 3444544 489999999999999 7767777765 7888887654443 33 3445555443
No 176
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=59.92 E-value=4.8 Score=29.18 Aligned_cols=20 Identities=20% Similarity=0.592 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCchHHHHh
Q 022228 274 FQVLRAMVQANPQLFPCFKS 293 (300)
Q Consensus 274 f~~lR~~vq~nP~~L~~~lq 293 (300)
|++|+.+|++||++.+-||.
T Consensus 2 ~~~lt~~I~~~p~l~ekIL~ 21 (64)
T PF09494_consen 2 FEALTKLIRSDPELYEKILM 21 (64)
T ss_pred HHHHHHHHHcCHHHHHHHHc
Confidence 78999999999999988874
No 177
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=59.27 E-value=11 Score=31.90 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=26.4
Q ss_pred eecCCCCchhhcccCCCcEEEEEEecCCCCCC
Q 022228 52 KVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 83 (300)
Q Consensus 52 kiL~D~~tL~d~gI~~g~~I~v~v~k~~~~~~ 83 (300)
|-.+|+++|..++++-||+|.|-+..++..++
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p~~~~~ 143 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPPNRRPP 143 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCcccCCC
Confidence 44588899999999999999999987665543
No 178
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=58.69 E-value=83 Score=24.27 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=40.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeec-CCCCchhhc--ccCCCcEEEEEEec
Q 022228 15 DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY-QGKVL-KDDTTLEEN--KVAENSFVVIMLTK 77 (300)
Q Consensus 15 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~-~GkiL-~D~~tL~d~--gI~~g~~I~v~v~k 77 (300)
.+-|..+.||.+|...|.++.+ +.+++--.+| +...+ ..+.++.++ .-+++.+|+|..+.
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~---l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Ys~ 82 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLK---LKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSYCK 82 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhC---CCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEEeC
Confidence 3458899999999999999988 6555533344 44323 445666554 12678899887654
No 179
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=58.16 E-value=36 Score=26.11 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=26.3
Q ss_pred CCCcEEEEEeCC--CCCHHHHHHHHHHHhCCCCCC
Q 022228 9 LKGTSFDVEVKP--EDTVFDVKMKIETVQGSDVYP 41 (300)
Q Consensus 9 l~g~~~~ieV~~--~~TV~~LK~kI~~~~g~~~ip 41 (300)
.+|.+..+.+++ +.+..+|++.|....+ ++
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~---l~ 38 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFG---LN 38 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhC---CC
Confidence 468888889988 7799999999999999 66
No 180
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=57.54 E-value=55 Score=25.40 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=43.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCCCC--CC-CeEEEeCC--eecCCCCchhhcccCCCcEEEEEEe
Q 022228 14 FDVEVKPEDTVFDVKMKIETVQ-GSDVYP--AA-QQMLIYQG--KVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 14 ~~ieV~~~~TV~~LK~kI~~~~-g~~~ip--~~-~qkLi~~G--kiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
..+.|+..+|+.++-++++... |.. ++ +. ..++-++| ..|..+.++.+-||+.-+.|.++..
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrR-V~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRR-VAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTS-S---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhccee-cCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 4578999999999999997653 432 32 23 45667888 9999999999999999999988764
No 181
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=56.97 E-value=41 Score=26.59 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=32.5
Q ss_pred EEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 022228 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY 49 (300)
Q Consensus 6 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~ 49 (300)
++...|++..+.|+.+.+..+|+.++.+..+ +... +.|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~---~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFG---AGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhC---CCCc-eEEEE
Confidence 4566788999999999999999999999998 5444 55544
No 182
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=56.91 E-value=2.5 Score=39.24 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=45.5
Q ss_pred CEEEEEEc-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcE
Q 022228 1 MMKIFVKT-LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSF 70 (300)
Q Consensus 1 mM~I~VKt-l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~ 70 (300)
|+.|.++. +.|..+.++++..++|.+.+.++.+..+ +.+...||++.+- |++...|.++=.++..+
T Consensus 1 ~~~i~~~~~~~gn~i~ls~~~~~ri~D~~~~l~K~~~---vss~~~kll~~~l-lk~iahl~~p~mkEh~f 67 (278)
T KOG4842|consen 1 MIAIKTEGIKSGNAIYLSMAGSQRIPDKNPHLQKVAV---VSSKPNKLLALNL-LKEIAHLVSPLMKEHHF 67 (278)
T ss_pred CccEEEEEEecCcEEEEEeccccccCCCCcccceeee---eccchHHHHhhhh-hhhhhhhhhhhhccccc
Confidence 44444442 3688899999999999999999999988 7778888887762 33334444443344333
No 183
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=55.77 E-value=33 Score=25.87 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=21.9
Q ss_pred EEEcCCCc-EEEEEeC-CCCCHHHHHHHHHHHhC
Q 022228 5 FVKTLKGT-SFDVEVK-PEDTVFDVKMKIETVQG 36 (300)
Q Consensus 5 ~VKtl~g~-~~~ieV~-~~~TV~~LK~kI~~~~g 36 (300)
+.|....+ ...|.++ ...+|.+||..|..+.+
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~ 35 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEKKK 35 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHHhC
Confidence 34444443 4457776 56899999999987766
No 184
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=54.78 E-value=11 Score=24.74 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 174 WDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 174 f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
|||+-+..||+.+-+|..+|.+.| ||+
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L--gis 31 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL--GIS 31 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH--TS-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH--CCC
Confidence 789999999999999999999998 554
No 185
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=52.58 E-value=56 Score=26.66 Aligned_cols=72 Identities=11% Similarity=0.236 Sum_probs=46.7
Q ss_pred EEEEEEcCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec--CCCCchhhc--ccCCCcEEEE
Q 022228 2 MKIFVKTLKG----TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVL--KDDTTLEEN--KVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g----~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL--~D~~tL~d~--gI~~g~~I~v 73 (300)
+.|.+|...+ +.-.+.|++++|+..+-..|.+..+ ++..++-++|=..-. ..|..+.++ +..-++.|+|
T Consensus 31 V~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lk---l~as~slflYVN~sFAPsPDq~v~~Ly~cf~~d~~Lvl 107 (116)
T KOG3439|consen 31 VQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLK---LQASDSLFLYVNNSFAPSPDQIVGNLYECFGTDGKLVL 107 (116)
T ss_pred EEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhC---CcccCeEEEEEcCccCCCchhHHHHHHHhcCCCCEEEE
Confidence 4455554433 3345778999999999999999999 888999888855544 334444433 1233345555
Q ss_pred EEe
Q 022228 74 MLT 76 (300)
Q Consensus 74 ~v~ 76 (300)
...
T Consensus 108 ~Yc 110 (116)
T KOG3439|consen 108 NYC 110 (116)
T ss_pred EEe
Confidence 443
No 186
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=52.30 E-value=44 Score=32.07 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=46.1
Q ss_pred EEeCCCCCHHHHHHHHHHHh----CCC--------CCCCCCeEEEeCCeecCCCCchhhcc---cCCCcEEEEEEecCC
Q 022228 16 VEVKPEDTVFDVKMKIETVQ----GSD--------VYPAAQQMLIYQGKVLKDDTTLEENK---VAENSFVVIMLTKNK 79 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~----g~~--------~ip~~~qkLi~~GkiL~D~~tL~d~g---I~~g~~I~v~v~k~~ 79 (300)
|....-.-|..|+..|.++. ... ..+.+.+-|+|+|++|..+.||..+. -|.++-|+|..|.+.
T Consensus 252 L~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k~ 330 (331)
T PF11816_consen 252 LNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRKG 330 (331)
T ss_pred ecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEecC
Confidence 44445567889999998887 100 03567789999999999999887663 477777888777543
No 187
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=52.14 E-value=1e+02 Score=23.27 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=38.3
Q ss_pred EEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC--eecC
Q 022228 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG--KVLK 55 (300)
Q Consensus 6 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G--kiL~ 55 (300)
|-..+|..-.+.+.+..||.++-.++.++.| +..+...+++-| |.|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRg---l~~~~~~vf~~g~~k~l~ 52 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRG---INYAAVDLFLVGGDKPLV 52 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcC---CChhHEEEEEecCCcccc
Confidence 3456888889999999999999999999999 777777776655 4554
No 188
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=52.06 E-value=16 Score=32.67 Aligned_cols=27 Identities=11% Similarity=0.357 Sum_probs=24.6
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhc
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAY 187 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAaf 187 (300)
..++++..|+.+| |.+.++.+|++...
T Consensus 154 ~~~ea~~AL~~LG---y~~~ea~~av~~~~ 180 (203)
T PRK14602 154 VFRDALAGLANLG---YGEEEARPVLKEVL 180 (203)
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHHh
Confidence 4688999999999 99999999999885
No 189
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=52.01 E-value=24 Score=33.47 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=29.6
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 022228 161 GAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (300)
Q Consensus 161 ~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl 198 (300)
.+|.+|-++-| -.=-+|.+||.-+.+|-|.|+|||-
T Consensus 7 ~~VKeLRe~Tg--AGMmdCKkAL~E~~Gd~EkAie~LR 42 (296)
T COG0264 7 ALVKELREKTG--AGMMDCKKALEEANGDIEKAIEWLR 42 (296)
T ss_pred HHHHHHHHHhC--CcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56788887722 4456799999999999999999996
No 190
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=50.11 E-value=49 Score=25.28 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 22 DTVFDVKMKIETVQGSDVYPAAQQML--IYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 22 ~TV~~LK~kI~~~~g~~~ip~~~qkL--i~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
.+..+|+.|..+..+ ++....+| .-.|.+++|+.-+.. +.++..++++
T Consensus 21 ~sL~EL~~K~~~~l~---~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~L 70 (78)
T cd06539 21 SSLQELISKTLDALV---ITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMVL 70 (78)
T ss_pred cCHHHHHHHHHHHhC---CCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEEE
Confidence 479999999999999 76555555 458999988765554 3444444443
No 191
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=49.41 E-value=41 Score=30.88 Aligned_cols=73 Identities=18% Similarity=0.368 Sum_probs=46.8
Q ss_pred EEEEEEcCC--CcEEE----EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----Ce--ecCCCCchhhcccCCCc
Q 022228 2 MKIFVKTLK--GTSFD----VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ----GK--VLKDDTTLEENKVAENS 69 (300)
Q Consensus 2 M~I~VKtl~--g~~~~----ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~----Gk--iL~D~~tL~d~gI~~g~ 69 (300)
+-|++|..+ .+++. +-|+.+++|.+|-..|.+..| ++.+.--++|. ++ .|+...++....|.+||
T Consensus 69 iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g---~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~Gd 145 (249)
T PF12436_consen 69 ILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAG---LPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGD 145 (249)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT-----TT--EEEEEEEETTEEEE--SSSBHHHTT--TTE
T ss_pred EEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEEeccceeeEcCCCCchhhcccCCCC
Confidence 457777553 23322 467889999999999999999 88876666663 43 36788999999999999
Q ss_pred EEEEEEec
Q 022228 70 FVVIMLTK 77 (300)
Q Consensus 70 ~I~v~v~k 77 (300)
.|++-...
T Consensus 146 Ii~fQ~~~ 153 (249)
T PF12436_consen 146 IICFQRAP 153 (249)
T ss_dssp EEEEEE--
T ss_pred EEEEEecc
Confidence 88776543
No 192
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=49.21 E-value=30 Score=27.03 Aligned_cols=54 Identities=24% Similarity=0.228 Sum_probs=32.0
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CC------eecCCCC---ch--hhcccCCCcEEEEE
Q 022228 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY-QG------KVLKDDT---TL--EENKVAENSFVVIM 74 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~-~G------kiL~D~~---tL--~d~gI~~g~~I~v~ 74 (300)
++++...||.+|-..|...+. ...-+|+. +| .+|-++. .+ .++-+++||.|.++
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL-----EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc-----hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence 344456799999999987753 22333322 12 1222222 23 35779999999887
No 193
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=49.06 E-value=35 Score=32.70 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=34.4
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
..++.++-|.+-| .+.+++..+++.+.++|.+|.+|+..+
T Consensus 173 ~~~~~~~~L~~~~---~~~~~a~~~~~l~~G~p~~A~~~~~~~ 212 (319)
T PRK08769 173 PAHEALAWLLAQG---VSERAAQEALDAARGHPGLAAQWLRED 212 (319)
T ss_pred CHHHHHHHHHHcC---CChHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 3467777788888 999999999999999999999999655
No 194
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=48.95 E-value=22 Score=31.42 Aligned_cols=28 Identities=11% Similarity=0.404 Sum_probs=25.1
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcC
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYN 188 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafn 188 (300)
..++++..|+.+| |.+.++.+|++....
T Consensus 142 ~~~e~~~AL~~LG---y~~~ea~~av~~~~~ 169 (188)
T PRK14606 142 IYHESLEALVSLG---YPEKQAREAVKHVYR 169 (188)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHhh
Confidence 4688999999999 999999999998854
No 195
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=48.61 E-value=11 Score=28.92 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=14.5
Q ss_pred hhCcHHHHHHHHHHHhCCCchHHHHh
Q 022228 268 LRNSPQFQVLRAMVQANPQLFPCFKS 293 (300)
Q Consensus 268 Lr~~pqf~~lR~~vq~nP~~L~~~lq 293 (300)
..++| .++|+++++||++.-.|+|
T Consensus 42 ~~~~p--~~ar~lL~~nPqLa~Al~q 65 (84)
T PF14327_consen 42 AQQNP--EQARQLLQQNPQLAYALFQ 65 (84)
T ss_dssp HC------HHHHHHHS-THHHHHHHH
T ss_pred HHhCH--HHHHHHHHHCcHHHHHHHH
Confidence 34566 6788899999988777665
No 196
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=48.21 E-value=33 Score=29.50 Aligned_cols=60 Identities=32% Similarity=0.371 Sum_probs=43.3
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
.+++|+-+++.|.|.|+... +-|||. |.+..| .. ||.|.- .++.++.+|+..|++-.+-+
T Consensus 47 nLfLkdkK~q~~lv~~~e~~-~vDLk~-ih~~IG-----~~--RlsFg~----~E~l~E~LGv~pG~VT~Fgl 106 (164)
T COG3760 47 NLFLKDKKDQFFLVTVDEDA-VVDLKS-IHETIG-----AA--RLSFGS----PERLMEYLGVIPGSVTVFGL 106 (164)
T ss_pred eeEeecCCCCEEEEEecccc-eecHHH-HHHHhc-----ee--eeecCC----HHHHHHHhCCCcCceeEeee
Confidence 47899999988889998664 558884 788877 33 777753 34566677888888665543
No 197
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=47.25 E-value=62 Score=24.45 Aligned_cols=49 Identities=12% Similarity=0.312 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 22 DTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 22 ~TV~~LK~kI~~~~g~~~ip~~~qkLi~--~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
.+..+|+.|..++.+ ++....+|+. .|..++|+.-+.. +.+ +++.|++.
T Consensus 19 ~sL~eL~~K~~~~l~---l~~~~~~l~L~eDGT~VddEeyF~t--Lp~-nt~l~~L~ 69 (74)
T smart00266 19 SSLEELLSKVCDKLA---LPDSPVTLVLEEDGTIVDDEEYFQT--LPD-NTELMALE 69 (74)
T ss_pred CCHHHHHHHHHHHhC---CCCCCcEEEEecCCcEEccHHHHhc--CCC-CcEEEEEc
Confidence 479999999999999 7766666644 7999988765554 333 34444443
No 198
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=46.94 E-value=74 Score=32.75 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=12.4
Q ss_pred cccccCCChHHHHHHHHhcc
Q 022228 151 SNLVAGNNLEGAIQQILDMG 170 (300)
Q Consensus 151 s~l~~g~~~e~~I~~i~eMG 170 (300)
....+|+.-+....+|+.=|
T Consensus 350 dQV~tGeae~~~~e~Iv~~~ 369 (574)
T PF07462_consen 350 DQVTTGEAENAQPENIVPEG 369 (574)
T ss_pred ccceeccccccchhhhhcCc
Confidence 44566666555667777655
No 199
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=46.81 E-value=20 Score=32.11 Aligned_cols=29 Identities=17% Similarity=0.518 Sum_probs=24.8
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcCC
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNN 189 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnN 189 (300)
..+++|..|+.|| |.+.|+.+|+....-+
T Consensus 155 ~~~~~v~AL~~LG---y~~~e~~~av~~v~~~ 183 (201)
T COG0632 155 ALEEAVEALVALG---YKEKEIKKAVKKVLKE 183 (201)
T ss_pred hhhHHHHHHHHcC---CCHHHHHHHHHHHHhc
Confidence 3455699999999 9999999999988765
No 200
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.78 E-value=1.2e+02 Score=23.92 Aligned_cols=73 Identities=25% Similarity=0.192 Sum_probs=43.2
Q ss_pred CEEEEEEcCCCcE--------EEE--EeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee------c-CCC-C-ch
Q 022228 1 MMKIFVKTLKGTS--------FDV--EVK-PEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKV------L-KDD-T-TL 60 (300)
Q Consensus 1 mM~I~VKtl~g~~--------~~i--eV~-~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~Gki------L-~D~-~-tL 60 (300)
||.|.|+.+.|-. +.+ ++. ...||++|-..|..+.-. - +++ -+|++|.+ | .|- - .|
T Consensus 4 ~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie--~-r~~-lFi~~gsvrpGii~lINd~DWEll 79 (101)
T KOG4146|consen 4 AHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIE--T-RDS-LFIHHGSVRPGIIVLINDMDWELL 79 (101)
T ss_pred ceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhc--C-Ccc-eEeeCCcCcCcEEEEEeccchhhh
Confidence 4667777665422 223 322 457899999988886531 1 222 55666533 2 222 1 22
Q ss_pred --hhcccCCCcEEEEEEec
Q 022228 61 --EENKVAENSFVVIMLTK 77 (300)
Q Consensus 61 --~d~gI~~g~~I~v~v~k 77 (300)
++|.+++||.|+++...
T Consensus 80 ekedy~ledgD~ivfiSTl 98 (101)
T KOG4146|consen 80 EKEDYPLEDGDHIVFISTL 98 (101)
T ss_pred cccccCcccCCEEEEEEec
Confidence 68899999999887543
No 201
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=46.70 E-value=62 Score=24.69 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhh
Q 022228 22 DTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVLKDDTTLEE 62 (300)
Q Consensus 22 ~TV~~LK~kI~~~~g~~~ip~~~qkLi~--~GkiL~D~~tL~d 62 (300)
.+..+|+.|..++.+ ++....+|+. .|-.++|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~---l~~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 21 SSLEELLSKACEKLK---LPSAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCHHHHHHHHHHHcC---CCCCCeEEEEeCCCcEEccHHHHhc
Confidence 479999999999999 7655666554 7888888765544
No 202
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=46.14 E-value=25 Score=31.11 Aligned_cols=28 Identities=11% Similarity=0.357 Sum_probs=24.7
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcC
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYN 188 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafn 188 (300)
..++.+..|+.+| |.|.++.+|++....
T Consensus 144 ~~~e~~~aL~~LG---y~~~ea~~al~~v~~ 171 (186)
T PRK14600 144 INDDALAALISLG---YEKTKAFNAIQKIKP 171 (186)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHhhc
Confidence 3578999999999 999999999998753
No 203
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=45.74 E-value=40 Score=29.08 Aligned_cols=71 Identities=20% Similarity=0.327 Sum_probs=44.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHH-HHH---HHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKM-KIE---TVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~-kI~---~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
||.|+++ ++|+.+.++++|..++.++-. .+. .+.|++.-...--.++++|+...-..++.. .-+|..|.=+
T Consensus 1 ~~~i~lt-vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~--~~~G~~ItTi 75 (156)
T COG2080 1 KMPITLT-VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDGEAVNSCLTLAV--QAEGAEITTI 75 (156)
T ss_pred CCcEEEE-ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEECCeEehHHHHHHH--HhCCCeEEEe
Confidence 4667775 789999999999998777654 332 334443233445577788877665544443 2345555433
No 204
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=45.59 E-value=25 Score=31.00 Aligned_cols=26 Identities=15% Similarity=0.551 Sum_probs=23.7
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAA 186 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAa 186 (300)
..++++..|+.+| |.+.++.+|++..
T Consensus 141 ~~~ea~~AL~~LG---y~~~ea~~a~~~~ 166 (183)
T PRK14601 141 DKSEALAALLTLG---FKQEKIIKVLASC 166 (183)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHhc
Confidence 3578999999999 9999999999876
No 205
>PF14053 DUF4248: Domain of unknown function (DUF4248)
Probab=45.18 E-value=15 Score=27.24 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCchHHHHhccC
Q 022228 273 QFQVLRAMVQANPQLFPCFKSWGN 296 (300)
Q Consensus 273 qf~~lR~~vq~nP~~L~~~lq~~~ 296 (300)
-...||+.|..||+|+..|...|-
T Consensus 24 A~r~L~rwI~~~~~L~~~L~~~Gy 47 (69)
T PF14053_consen 24 AVRKLRRWIRRNPELLEELEATGY 47 (69)
T ss_pred HHHHHHHHHHHCHHHHHHHHHcCC
Confidence 377999999999999999998874
No 206
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=44.79 E-value=23 Score=31.49 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=24.2
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcC
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYN 188 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafn 188 (300)
.++.+.-|+.+| |.+.++.+|++....
T Consensus 149 ~~e~~~aL~~LG---y~~~ea~~ai~~i~~ 175 (195)
T PRK14604 149 DRELSEILISLG---YSAAEAAAAIAALPS 175 (195)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHhh
Confidence 578999999999 999999999998754
No 207
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=42.89 E-value=49 Score=31.79 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=31.1
Q ss_pred HHHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 160 EGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 160 e~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
+...+-|.+- | .+.+++..++|.+.++|.+|.+||..|
T Consensus 170 ~~~~~~L~~~~~---~~~~~a~~~~~la~G~~~~Al~l~~~~ 208 (334)
T PRK07993 170 QYALTWLSREVT---MSQDALLAALRLSAGAPGAALALLQPE 208 (334)
T ss_pred HHHHHHHHHccC---CCHHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 4555556664 7 999999999999999999999998654
No 208
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=42.64 E-value=74 Score=22.46 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=38.6
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
|+|.+.+|+... +....|+.++=..|....++ .-.--..+|+..+-+ +-|+++++|.++
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~-----~~~~A~Vng~~vdl~-----~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAK-----RAVAAKVNGQLVDLD-----HPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHH-----CEEEEEETTEEEETT-----SBB-SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHh-----heeEEEEcCEECCCC-----CCcCCCCEEEEE
Confidence 455567888755 67778999999999988761 122234677665443 346667777665
No 209
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=41.54 E-value=72 Score=32.85 Aligned_cols=8 Identities=0% Similarity=0.044 Sum_probs=3.2
Q ss_pred CCCCCeEE
Q 022228 40 YPAAQQML 47 (300)
Q Consensus 40 ip~~~qkL 47 (300)
|.-+.-+|
T Consensus 205 i~LeKenI 212 (574)
T PF07462_consen 205 INLEKENI 212 (574)
T ss_pred cccchhhh
Confidence 33343333
No 210
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=40.02 E-value=59 Score=27.92 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=31.3
Q ss_pred EEEEEEcCCCcEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhc
Q 022228 2 MKIFVKTLKGTSFDVEVKP-EDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~-~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~ 63 (300)
|.++|+. | .+.++++. .+.+.++++...+... +.. . ++.|+.++...|++||
T Consensus 68 veL~V~v--G-ri~lele~~~~~ie~I~~iCee~lp---f~y---~-i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 68 VELTVKV--G-RIILELEDEEDVIEKIREICEEVLP---FGY---D-IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEEE--e-EEEEEecCcHHHHHHHHHHHHHhCC---Cce---E-eeeeEEeccCCchhhh
Confidence 3444442 4 34567766 5566666654444332 211 1 4579999999999998
No 211
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=39.57 E-value=36 Score=30.34 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=24.3
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhc
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAY 187 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAaf 187 (300)
..++++..|+.+| |.+.++.+|++...
T Consensus 151 ~~~ea~~AL~~LG---y~~~ea~~al~~i~ 177 (197)
T PRK14603 151 AAEDAVLALLALG---FREAQVRSVVAELL 177 (197)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 4678999999999 99999999999864
No 212
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=39.35 E-value=26 Score=26.76 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHHHHhCCCCCCCCCeEEEe---CCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 30 KIETVQGSDVYPAAQQMLIY---QGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 30 kI~~~~g~~~ip~~~qkLi~---~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
.|+++.. +.++...|+- ++..|+=+++|.+|||++ |+.+-.+.
T Consensus 2 ~IC~KCE---fdp~htvLLrD~~s~e~LdLsKSLndlGirE---LYA~D~~~ 47 (79)
T PF09469_consen 2 AICEKCE---FDPEHTVLLRDYQSGEELDLSKSLNDLGIRE---LYAWDTSR 47 (79)
T ss_dssp HHHHHTT-----TTSEEEES-SS---B--TTS-HHHHT-SE---EEEEE---
T ss_pred ccccccc---cCcceEEEeecCCCCCcccccccHHHhhHHH---HHhhcccc
Confidence 4777766 7788888874 578899999999999986 77766553
No 213
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.34 E-value=53 Score=35.03 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=47.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe----CCeec--CCCCchhhcccCCCcEEEEEEecC
Q 022228 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY----QGKVL--KDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 13 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~----~GkiL--~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
.+.+.|+...++..+|+.|+...+ ++.+.+||.- +|..+ .++.+|+. .-++.+|.|-+.++
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~---V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~ 944 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLE---VDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAP 944 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhC---cChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCc
Confidence 578999999999999999999999 8899999863 44444 45667775 45677777766543
No 214
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=39.28 E-value=22 Score=29.01 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=24.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHH
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKI 31 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI 31 (300)
|+|+|. .+++.+..+++.+.|.++|.+++
T Consensus 1 mkI~i~-i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKIT-IGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEE-ETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEE-ECCEEEEEEECCCHHHHHHHHhC
Confidence 788887 46889999999998888888765
No 215
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=38.25 E-value=99 Score=23.53 Aligned_cols=39 Identities=13% Similarity=0.021 Sum_probs=32.7
Q ss_pred EEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE
Q 022228 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQML 47 (300)
Q Consensus 6 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL 47 (300)
|...+|+...+-|.+++||.++-+.++++.+ +.+..--|
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~---ldp~eh~L 42 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQ---LDPMEHYL 42 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcC---CChhHhee
Confidence 5556899999999999999999999999999 66665444
No 216
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=37.36 E-value=70 Score=27.39 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=31.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhc
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~ 63 (300)
|.++|+. | .+-+++...+.+.++++...+... ++. -+..|+.+.+..|+.||
T Consensus 67 veL~V~V--G-rI~le~~~~~~i~~I~eiC~e~~p---F~y----~i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 67 VELRVQV--G-RIILELEDEDIVEEIEEICKEMLP---FGY----EVRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEE--e-EEEEEecCHHHHHHHHHHHHhhCC---Cce----EeeeeeEeecCCchhhh
Confidence 3444442 4 344666666667777664444432 211 14679999999999998
No 217
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=37.00 E-value=4.1e+02 Score=26.36 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=14.0
Q ss_pred CCCchhhcccCCCcEEEE
Q 022228 56 DDTTLEENKVAENSFVVI 73 (300)
Q Consensus 56 D~~tL~d~gI~~g~~I~v 73 (300)
+.-+|.++.+++||+|..
T Consensus 122 ~sGvi~e~lvk~gdtV~~ 139 (457)
T KOG0559|consen 122 ASGVITELLVKDGDTVTP 139 (457)
T ss_pred CcceeeEEecCCCCcccC
Confidence 455788888999998863
No 218
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=36.85 E-value=16 Score=28.16 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=21.8
Q ss_pred CcHHHHHHHHHHHhCCCchHHHHhc
Q 022228 270 NSPQFQVLRAMVQANPQLFPCFKSW 294 (300)
Q Consensus 270 ~~pqf~~lR~~vq~nP~~L~~~lq~ 294 (300)
..|.|..|+.+-+.||+.|..+-+.
T Consensus 2 ~lp~FD~L~~LA~~dPe~fe~lr~~ 26 (83)
T PF11333_consen 2 ELPDFDELKELAQNDPEAFEQLRQE 26 (83)
T ss_pred CCCCHHHHHHHHHhCHHHHHHHHHH
Confidence 4589999999999999999988664
No 219
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=36.28 E-value=16 Score=40.21 Aligned_cols=69 Identities=9% Similarity=-0.116 Sum_probs=54.8
Q ss_pred EEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 6 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
.+++....|...+....++...|.+|....| |+...++|++-|..++++..+..|+....-..+..++.
T Consensus 329 ~~~l~~p~~~~~~~~~~~~~~~~p~~~~qtg---ipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~as 397 (1143)
T KOG4248|consen 329 RCNLACPPPRHLHVVRPMSHYTTPMVLQQTG---IPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAAS 397 (1143)
T ss_pred hhcccCCCCceeeecchhhhccCceeeeccc---ccccccceeeecccccCCCCCCccccccCCCCCccccC
Confidence 3455555666666677788888999999999 99999999999999999999998887766666554443
No 220
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=35.75 E-value=1.3e+02 Score=20.90 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=30.2
Q ss_pred HHHHHHHHhc--cCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 160 EGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 160 e~~I~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
|+.|.+.... | -+|+-++|-|+-..=|.+-||.-|++
T Consensus 10 edlI~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T PF11547_consen 10 EDLINQAQVVLQG---KSRNVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp HHHHHHHHHHSTT---S-HHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcHHHHHHHHHHhcccHHHHHHHHhc
Confidence 6777775554 7 99999999999999999999999986
No 221
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.43 E-value=63 Score=26.33 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=36.9
Q ss_pred EeCC-CCCHHHHHHHHHHHhCCC-CCC------CCCeEEEe----------------CC-eecC-CCCchhhcccCCCcE
Q 022228 17 EVKP-EDTVFDVKMKIETVQGSD-VYP------AAQQMLIY----------------QG-KVLK-DDTTLEENKVAENSF 70 (300)
Q Consensus 17 eV~~-~~TV~~LK~kI~~~~g~~-~ip------~~~qkLi~----------------~G-kiL~-D~~tL~d~gI~~g~~ 70 (300)
+++. +.||++|+..|.+....+ +++ -+..|+++ .. .+|+ ++++|+.|||.+...
T Consensus 28 d~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenETE 107 (127)
T KOG4147|consen 28 DVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENETE 107 (127)
T ss_pred ccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcchh
Confidence 5675 789999988776654311 022 23344443 12 4565 467999999998877
Q ss_pred EEEEE
Q 022228 71 VVIML 75 (300)
Q Consensus 71 I~v~v 75 (300)
|.++.
T Consensus 108 is~F~ 112 (127)
T KOG4147|consen 108 ISFFC 112 (127)
T ss_pred hhhhh
Confidence 76554
No 222
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.39 E-value=45 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=18.1
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHh
Q 022228 163 IQQILDMGGGTWDRDTVVRALRAA 186 (300)
Q Consensus 163 I~~i~eMG~~~f~r~qv~~ALrAa 186 (300)
-+.||+|| |...++.+=+|-|
T Consensus 6 k~dLi~lG---f~~~tA~~IIrqA 26 (59)
T PF11372_consen 6 KKDLIELG---FSESTARDIIRQA 26 (59)
T ss_pred HHHHHHcC---CCHHHHHHHHHHH
Confidence 36799999 9999999888865
No 223
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=35.25 E-value=33 Score=26.47 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=19.5
Q ss_pred EEcCCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 022228 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQ 35 (300)
Q Consensus 6 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~ 35 (300)
|...+|.+|.++|..+.-+..-|+.|+...
T Consensus 40 itf~ngatfqvevpgsqhi~sqkk~iermk 69 (102)
T PF01376_consen 40 ITFKNGATFQVEVPGSQHIDSQKKAIERMK 69 (102)
T ss_dssp EEETTS-EEEE--SSTTSTTTHHHHHHHHH
T ss_pred EEecCCcEEEEecCCccchhhhHHHHHHHH
Confidence 344579999999998887777777766543
No 224
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=35.12 E-value=89 Score=24.16 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=34.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeCCeecC
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQML-IYQGKVLK 55 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL-i~~GkiL~ 55 (300)
..+.+.|+++.|=.++|+.|+..+| +.+...+. ++.||.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~---V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYG---VKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHT---SEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcC---CCeeEEEEeEeCCCceE
Confidence 5789999999999999999999999 87877754 57887644
No 225
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=35.01 E-value=1.3e+02 Score=23.22 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=39.4
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---Ce--ecCCCCchhhc
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ---GK--VLKDDTTLEEN 63 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~---Gk--iL~D~~tL~d~ 63 (300)
+.+|+ ..|.+-.|.+...-|-..|++||..... ++....-|.|- |- -|.++.-|.++
T Consensus 2 ~fKv~-~~g~~RRf~~~~~pt~~~L~~kl~~Lf~---lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 2 QFKSS-FLGDTRRIVFPDIPTWEALASKLENLYN---LPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eEEEE-eCCceEEEecCCCccHHHHHHHHHHHhC---CChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 34555 4566666777777789999999999999 88877777772 21 24555555554
No 226
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=34.93 E-value=95 Score=28.47 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=32.4
Q ss_pred EEEEEEcCC---CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE
Q 022228 2 MKIFVKTLK---GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI 48 (300)
Q Consensus 2 M~I~VKtl~---g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi 48 (300)
+.|+|+... +..|++.+....|-.+|-++|+++.+ +.+..+||.
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~---~dP~~lr~~ 223 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLN---VDPEHLRFF 223 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHT---S-GGGEEEE
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEE
Confidence 456676542 34799999999999999999999999 779999885
No 227
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=34.90 E-value=56 Score=21.65 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHH
Q 022228 174 WDRDTVVRALRAAYNNPERAVEYLY 198 (300)
Q Consensus 174 f~r~qv~~ALrAafnNpdrAvEyLl 198 (300)
..|+.++..|+..-+|.-+|+|.++
T Consensus 15 ~kr~~Le~iL~~C~GDvv~AIE~~l 39 (39)
T PF03474_consen 15 QKRSVLELILQRCNGDVVQAIEQFL 39 (39)
T ss_pred CChHHHHHHHHHcCCcHHHHHHHhC
Confidence 4789999999999999999999874
No 228
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=34.39 E-value=90 Score=25.46 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=29.8
Q ss_pred hHHHHHHHHh--ccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 159 LEGAIQQILD--MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 159 ~e~~I~~i~e--MG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
.|+.+++|.. .+ |.|++++.+|.+-+ +..++||++|--
T Consensus 31 l~~Ia~~i~~~~s~---~t~~di~~vl~~~~---~~~~~~l~~G~s 70 (124)
T PF14848_consen 31 LEDIAEEIAKEGST---LTRADIEAVLNALK---DEMIEALMNGYS 70 (124)
T ss_pred HHHHHHHHHHhCCC---CCHHHHHHHHHHHH---HHHHHHHhCCCE
Confidence 4666677763 56 99999999998854 567899999943
No 229
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=33.34 E-value=89 Score=33.99 Aligned_cols=62 Identities=16% Similarity=0.309 Sum_probs=45.7
Q ss_pred CCcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCchhhcc-c-CCCcEEEEE
Q 022228 10 KGTSFDVEVK-PEDTVFDVKMKIETVQGSDVYPAAQQMLIY-QGKVLKDDTTLEENK-V-AENSFVVIM 74 (300)
Q Consensus 10 ~g~~~~ieV~-~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~-~GkiL~D~~tL~d~g-I-~~g~~I~v~ 74 (300)
.|+.++++.+ ...|+.+||..|..+.| +....+.|+- +|..+..++.|..|. . .+-+-|+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~---~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVG---HAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhc---hhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 4777778776 46789999999999999 6677777765 567778888888876 2 333445544
No 230
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.07 E-value=3.2e+02 Score=25.22 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=14.2
Q ss_pred hhcccCCCcEEEEEEe
Q 022228 61 EENKVAENSFVVIMLT 76 (300)
Q Consensus 61 ~d~gI~~g~~I~v~v~ 76 (300)
-|||.|+|.+|.+-++
T Consensus 148 lDlgFKEGeTIkinik 163 (253)
T KOG2500|consen 148 LDLGFKEGETIKINIK 163 (253)
T ss_pred ccccccCCcEEEEEee
Confidence 3599999999999988
No 231
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=32.99 E-value=68 Score=29.34 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.9
Q ss_pred EEEEEEcCCC---------cEEEEEeCCCCCHHHHHHHHHHHhC
Q 022228 2 MKIFVKTLKG---------TSFDVEVKPEDTVFDVKMKIETVQG 36 (300)
Q Consensus 2 M~I~VKtl~g---------~~~~ieV~~~~TV~~LK~kI~~~~g 36 (300)
|+|+|+-.+. ++|+|+++++.||.++-.+|.++..
T Consensus 5 ~~~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvLdaL~~Ik~~~D 48 (239)
T PRK13552 5 LTFNIFRYNPQDPGSKPHMVTYQLEETPGMTLFIALNRIREEQD 48 (239)
T ss_pred EEEEEEeeCCCCCCCCcceEEEEecCCCCCCHHHHHHHHHhcCC
Confidence 6677764432 4588889999999999999988744
No 232
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=32.57 E-value=31 Score=25.69 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=10.2
Q ss_pred CCCCCHHHHHHHHHHhcCCh
Q 022228 171 GGTWDRDTVVRALRAAYNNP 190 (300)
Q Consensus 171 ~~~f~r~qv~~ALrAafnNp 190 (300)
-|+|.|+|++. +.++|.|.
T Consensus 5 ~g~ftr~qA~a-V~a~y~NV 23 (70)
T PF06006_consen 5 EGPFTREQAEA-VAAQYRNV 23 (70)
T ss_dssp -----HHHHHH-HHHH-TTE
T ss_pred CCCccHHHHHH-HHHHhcce
Confidence 37899999864 77778775
No 233
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=32.07 E-value=1.1e+02 Score=23.95 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=35.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQM 46 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qk 46 (300)
+.|.|-..+|..+.++|.-+++..+|-+.+..+.| ++.+..+
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~---L~~e~~~ 43 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAG---MDSYTQN 43 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhC---CCHHHHh
Confidence 35667777899999999999999999999999999 7666543
No 234
>PF03333 PapB: Adhesin biosynthesis transcription regulatory protein; InterPro: IPR004356 P pili, or fimbriae, are ~68A in diameter and 1 micron in length, the bulk of which is a fibre composed of the main structural protein PapA []. At its tip, the pilus is terminated by a fibrillum consisting of repeating units of the PapE protein. This, in turn, is topped by the adhesins, PapF and PapG, both of which are needed for receptor binding. The tip fibrillum is anchored to the main PapA fibre by the PapK pilus-adaptor protein. PapH, an outer membrane protein, then anchors the entire rod in the bacterial envelope []. A cytoplasmic chaperone (PapD) assists in assembling the monomers of the macromolecule in the membrane. All of the functional pap genes are arranged in a cluster (operon) on the Escherichia coli genome. It is believed that selective pressure exerted by the host's urinal and intestinal tract isoreceptors forced the spread of this operon to other strains via lateral transfer []. PapB, encoded within the cluster, acts as a transcriptional regulator of the functional pap genes and is located in the bacterial cytoplasm []. Its mechanism involves differential binding to separate sites in the cluster, suggesting that this protein is both an activator and repressor of pilus-adhesion transcription. The protein shares similarity with other E. coli fimbrial- adhesion transcription regulators, such as AfaA, DaaA and FanB. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 3M8J_A.
Probab=31.84 E-value=66 Score=25.23 Aligned_cols=41 Identities=24% Similarity=0.519 Sum_probs=25.4
Q ss_pred cccccCCChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 022228 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203 (300)
Q Consensus 151 s~l~~g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP~ 203 (300)
..|..|...++...-|+++. +--=+.|+.||| +||..|++.
T Consensus 16 ~~L~pG~vs~e~F~lLl~ls--~IrS~kiI~AL~----------dyLV~G~sr 56 (91)
T PF03333_consen 16 GYLIPGKVSEEHFWLLLELS--SIRSEKIIAALR----------DYLVDGLSR 56 (91)
T ss_dssp C---TT-S-HHHHHHHHHHS------HHHHHHHH----------HHHTT---H
T ss_pred CccCCCCcCHHHHHHHHHHC--CCCcHHHHHHHH----------HHHHcCCcH
Confidence 45778889999999999995 167788999999 699999874
No 235
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=30.91 E-value=58 Score=25.14 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=24.6
Q ss_pred cccCCChHHHHHHHHhccCCCC-CHHHHHH-HHHH
Q 022228 153 LVAGNNLEGAIQQILDMGGGTW-DRDTVVR-ALRA 185 (300)
Q Consensus 153 l~~g~~~e~~I~~i~eMG~~~f-~r~qv~~-ALrA 185 (300)
+-.+..+...|+.+++.| -| .+++|+| |||.
T Consensus 7 V~lp~~~~~~i~~lV~~G--~y~s~SeviR~alr~ 39 (89)
T COG3609 7 VRLPEQLVEFIDELVESG--RYKSRSEVIRAALRL 39 (89)
T ss_pred EeCCHHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Confidence 345778899999999997 45 9999988 5664
No 236
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=29.59 E-value=2.1e+02 Score=26.97 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=17.8
Q ss_pred cCCCCchhhcccCCCcEEEEEEecCCCCC
Q 022228 54 LKDDTTLEENKVAENSFVVIMLTKNKRPT 82 (300)
Q Consensus 54 L~D~~tL~d~gI~~g~~I~v~v~k~~~~~ 82 (300)
|-|.+.|-++.+|.-+ +.+++||+..-+
T Consensus 115 lv~~~di~e~~lk~~~-~e~~irkkeal~ 142 (274)
T PLN02983 115 LVDSRDIVELQLKQLD-CELVIRKKEALP 142 (274)
T ss_pred hhccccceeeeccccc-eEEEEecccccC
Confidence 4567777777787655 445666665543
No 237
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=29.34 E-value=1.6e+02 Score=23.61 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=31.2
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG 51 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G 51 (300)
|+|-.-+|.+..|+|....+-.++|.++-++.|...........+.+|
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~~~~~~~~~v~d~ 50 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPEHPRNYCFYVLDG 50 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS--CCCEEEEEE-S
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCccccccceEEEecc
Confidence 566677999999999999999999999999999321111334455566
No 238
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=29.19 E-value=20 Score=34.75 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=45.9
Q ss_pred EEEEeCCCCCHH---HHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCCC-chhhcccCCCcEEEEEEecC
Q 022228 14 FDVEVKPEDTVF---DVKMKIETVQGSDVYPAAQQ--MLIYQGKVLKDDT-TLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 14 ~~ieV~~~~TV~---~LK~kI~~~~g~~~ip~~~q--kLi~~GkiL~D~~-tL~d~gI~~g~~I~v~v~k~ 78 (300)
+.+.+.+..+-+ ++++......+ +....+ +++|.++.|+|.. .|..++.++-+.|.++..+.
T Consensus 73 ~~~~i~p~~~~g~~~d~a~~~~~~ag---~sh~d~~~k~~y~~~e~rd~~l~l~~~g~p~~sk~~~~~~~~ 140 (344)
T KOG4361|consen 73 HGLAIVPQYPSGNALDLAKPLTEDAG---LSHYDQEVKLVYVDKELRDQSLRLSSAGVPDASKINVVPDPG 140 (344)
T ss_pred cccccccccccccchhhhcccccccc---eeecccccccceecccccccccccccccCcccccceeccChh
Confidence 445555555555 77777777777 444454 9999999998876 78999999999888876543
No 239
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=29.18 E-value=39 Score=24.01 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=21.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHH
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIET 33 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~ 33 (300)
|.|++++.+|+.|.++.+.-.--.-||..|..
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 67999999999999985533334445555654
No 240
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=29.14 E-value=2e+02 Score=22.73 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=43.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeCCee---------cCCCCchhhcccCCCcEEEE
Q 022228 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQML-IYQGKV---------LKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 11 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL-i~~Gki---------L~D~~tL~d~gI~~g~~I~v 73 (300)
..++.|.|+++.|=.++|+.|++.++ +.+..... +..|+. +..+..-...-+..|..|.+
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~---VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFG---VKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 46899999999999999999999999 77777654 444431 34445555556666666554
No 241
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=28.55 E-value=1.5e+02 Score=23.81 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=45.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCC-chhhcccCCCcEEEEEEec
Q 022228 15 DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT-TLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 15 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~-tL~d~gI~~g~~I~v~v~k 77 (300)
.|.-..-.|+.++-+.+.++.+.+.+.+=..-.|+.|+.|.... .|-.+.+..+ ++.+-+|-
T Consensus 24 ~l~~~~~~t~~~~l~~l~~~l~lh~VevIg~E~I~A~~ll~~~~~~L~H~~~~~~-~l~l~vrs 86 (104)
T PF14807_consen 24 NLPSSSQRTLPEFLQRLQQKLRLHVVEVIGNEGIFACQLLNSSPVCLLHCRVNAG-TLDLWVRS 86 (104)
T ss_pred eccccCcCCHHHHHHHHHHhcCceEEEEeCccceeeeeccCCCCeEEEEEEecCC-eEEEEEEc
Confidence 33334667888888888888773333444557899999998877 8999999877 88887764
No 242
>PF07022 Phage_CI_repr: Bacteriophage CI repressor helix-turn-helix domain; InterPro: IPR010744 This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2FJR_B.
Probab=28.38 E-value=66 Score=23.08 Aligned_cols=35 Identities=9% Similarity=0.248 Sum_probs=18.1
Q ss_pred HHHHH-HHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 160 EGAIQ-QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 160 e~~I~-~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
..+|. +.. .+|+++.+.+++--+ .++ --+|||++|
T Consensus 26 ~st~s~~~~--~r~~~P~~~l~~ia~-~~g---vsl~WLltG 61 (66)
T PF07022_consen 26 KSTLSNNWK--KRGSIPAEWLIKIAL-ETG---VSLDWLLTG 61 (66)
T ss_dssp HHHHH-HHH--HSSS--HHHHHHHHH-HH------HHHHHC-
T ss_pred HHHhhHHHH--hCCCCCHHHHHHHHH-HHC---cCHHHHHhC
Confidence 44566 443 467789777766322 233 338999999
No 243
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.14 E-value=3e+02 Score=21.67 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=38.3
Q ss_pred CEEEEEEc-----CCCcEEEEEeC--CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee------c-CC--CCchhh--
Q 022228 1 MMKIFVKT-----LKGTSFDVEVK--PEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKV------L-KD--DTTLEE-- 62 (300)
Q Consensus 1 mM~I~VKt-----l~g~~~~ieV~--~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~Gki------L-~D--~~tL~d-- 62 (300)
||||.++. ++++.+++.++ ...+|..+-..+..... -|...--++.+|.+ | .| =..++.
T Consensus 2 ~~KvellGgld~~fnqR~~el~~~~~e~~~vg~liD~~~~~i~---~p~~~sifie~g~lrpGiI~LINd~DWeLleke~ 78 (96)
T COG5131 2 EMKVELLGGLDVEFNQREIELTREEVEGSSVGTLIDALRYFIY---APTRDSIFIEHGELRPGIICLINDMDWELLEKER 78 (96)
T ss_pred CceEEEeccchhhhcceeeEEEEcccCCcchhhHHHHHHHHHh---CCccceeeecCCCCcccEEEEEcCccHhhhhccc
Confidence 46666652 23455556554 34567777666655322 12222223334422 2 22 124444
Q ss_pred cccCCCcEEEEEEe
Q 022228 63 NKVAENSFVVIMLT 76 (300)
Q Consensus 63 ~gI~~g~~I~v~v~ 76 (300)
|.+++||.|+++-.
T Consensus 79 y~ledgDiIvfist 92 (96)
T COG5131 79 YPLEDGDIIVFIST 92 (96)
T ss_pred ccCCCCCEEEEEec
Confidence 89999999988754
No 244
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=27.95 E-value=1.1e+02 Score=29.40 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=31.4
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GI 201 (300)
..+..++-|.+.| .+. ...+|+.+.++|-+|.+|+-.|-
T Consensus 168 ~~~~~~~~L~~~~---~~~--~~~~l~l~~G~p~~A~~~~~~~~ 206 (319)
T PRK06090 168 STAQAMQWLKGQG---ITV--PAYALKLNMGSPLKTLAMMKEGG 206 (319)
T ss_pred CHHHHHHHHHHcC---Cch--HHHHHHHcCCCHHHHHHHhCCCc
Confidence 3467778888888 873 46789999999999999987663
No 245
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=27.88 E-value=1.5e+02 Score=22.80 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=37.4
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA-AQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
++|++.+.. ...-|- -.+..+|+.|..+..+ ++. ..+.|--.|.+++|+.-+.. +.++..++++
T Consensus 5 fkv~~~~r~-~kkGV~-A~sL~EL~~K~~~~L~---~~~~~~lvLeeDGT~Vd~EeyF~t--LpdnT~lm~L 69 (81)
T cd06537 5 FRVCDHKRT-VRKGLT-AASLQELLAKALETLL---LSGVLTLVLEEDGTAVDSEDFFEL--LEDDTCLMVL 69 (81)
T ss_pred eEEecCCCC-eeEeEE-ccCHHHHHHHHHHHhC---CCCceEEEEecCCCEEccHHHHhh--CCCCCEEEEE
Confidence 455555432 222222 2479999999999988 642 33344457888888765554 3444444443
No 246
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=27.84 E-value=1.9e+02 Score=22.48 Aligned_cols=73 Identities=11% Similarity=0.191 Sum_probs=40.6
Q ss_pred EEEEEEcCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeec-CCCCchhhc--ccCCCcEEEE
Q 022228 2 MKIFVKTLKG----TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY-QGKVL-KDDTTLEEN--KVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g----~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~-~GkiL-~D~~tL~d~--gI~~g~~I~v 73 (300)
+.|.+|...+ +.-.+.|+.++|+..|-..|.++.+ +...+.-.+| +...- ..|.++.++ ....++.|+|
T Consensus 2 V~v~fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk---~~~~~slFlYin~sFaPspDe~vg~L~~~f~~~~~Liv 78 (87)
T PF04110_consen 2 VTVRFKAIGSAPILKQKKFKISASQTFATVIAFLRKKLK---LKPSDSLFLYINNSFAPSPDETVGDLYRCFGTNGELIV 78 (87)
T ss_dssp EEEEEEEETT----S--EEEEETTSBTHHHHHHHHHHCT-------SS-EEEEEEEE---TTSBHHHHHHHH-BTTBEEE
T ss_pred EEEEEEecCCCccccCcEEEECCCCchHHHHHHHHHHhC---CccCCeEEEEEcCccCCCchhHHHHHHHHhCCCCEEEE
Confidence 4555664432 2345678889999999999999988 5455554455 44332 455666654 2335566766
Q ss_pred EEec
Q 022228 74 MLTK 77 (300)
Q Consensus 74 ~v~k 77 (300)
.-+.
T Consensus 79 ~Ys~ 82 (87)
T PF04110_consen 79 SYSK 82 (87)
T ss_dssp EEES
T ss_pred EEec
Confidence 6554
No 247
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=27.77 E-value=95 Score=27.62 Aligned_cols=39 Identities=5% Similarity=0.154 Sum_probs=34.1
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
+.++.++-+.+.| |+++++.+..+.-+.|+|. ++.++.-
T Consensus 81 e~~el~~iy~~~G---l~~~~a~~i~~~l~~~~~~-~~~m~~e 119 (213)
T PF01988_consen 81 EKEELVEIYRAKG---LSEEDAEEIAEELSKDKDA-LDFMMRE 119 (213)
T ss_pred HHHHHHHHHHHCC---CCHHHHHHHHHHHHhCchH-HHHHHhh
Confidence 4566778888999 9999999999999999999 9998754
No 248
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=27.52 E-value=1.5e+02 Score=22.70 Aligned_cols=49 Identities=14% Similarity=0.358 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHhCCCCCCCC--CeEEE--eCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 22 DTVFDVKMKIETVQGSDVYPAA--QQMLI--YQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 22 ~TV~~LK~kI~~~~g~~~ip~~--~qkLi--~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
.+..+|+.|..++.+ ++.. ..+|+ -.|.+++|+.-+.. +.++. +.|++.
T Consensus 21 ~sL~eL~~K~~~~l~---l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT-~l~~L~ 73 (80)
T cd06536 21 SSLEELRIKACESLG---FDSSSAPITLVLAEDGTIVEDEDYFLC--LPPNT-KFVLLA 73 (80)
T ss_pred CCHHHHHHHHHHHhC---CCCCCCceEEEEecCCcEEccHHHHhh--CCCCc-EEEEEC
Confidence 479999999999998 7633 35554 47999988765554 33444 444443
No 249
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=26.71 E-value=41 Score=26.71 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=12.9
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCc
Q 022228 181 RALRAAYNNPERAVEYLYSG-IPEQ 204 (300)
Q Consensus 181 ~ALrAafnNpdrAvEyLl~G-IP~~ 204 (300)
..++.+ .|+|++||-+| ||++
T Consensus 75 ~s~k~a---l~~A~~Fl~~~~vP~~ 96 (96)
T PF08169_consen 75 SSLKPA---LDKASTFLKTGVVPDN 96 (96)
T ss_dssp HHH-HH---HHHHHHHHHS----TT
T ss_pred chhhHH---HHHHHHHHhcCCCCCC
Confidence 456666 47999999999 7863
No 250
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=26.46 E-value=57 Score=29.18 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=27.7
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCeEE--EeCC-----eecCCCC--chhhc
Q 022228 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYP---AAQQML--IYQG-----KVLKDDT--TLEEN 63 (300)
Q Consensus 11 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip---~~~qkL--i~~G-----kiL~D~~--tL~d~ 63 (300)
|--|.+.|.+++|+.++|++|.++.| ++ -+..|+ +..+ +.|+|+. .|.+.
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlg---v~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~~~ 193 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLG---VSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILFDE 193 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH------HHHHTT-EEEEEETTEE---EE--TT-T----GG
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhC---CChhhheeEEEEEEecCCcccceeccccchhhhhhh
Confidence 44588899999999999999999998 54 234455 3344 4567654 55544
No 251
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=26.05 E-value=1.9e+02 Score=29.93 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=52.5
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eC----CeecCCCCc----hhhcccCCCcEEEE
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQ----GKVLKDDTT----LEENKVAENSFVVI 73 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~----GkiL~D~~t----L~d~gI~~g~~I~v 73 (300)
|+|-+-+|....+.|+..+|+.++-+.+.++.++. . -+..-|+ |- -+.++|... |++..+..++.|++
T Consensus 191 VKvfseDgasksL~Vder~tardV~~lL~eKnH~~-~-d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseNK~lF 268 (622)
T KOG3751|consen 191 VKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCA-D-DEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSENKLLF 268 (622)
T ss_pred EEEEccCCceeeEeecccccHHHHHHHHHHhhhhh-c-ccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCceeEE
Confidence 44445688899999999999999999999998742 2 2233332 22 356777754 45557788888887
Q ss_pred EEecCCCC
Q 022228 74 MLTKNKRP 81 (300)
Q Consensus 74 ~v~k~~~~ 81 (300)
+.+.-|-.
T Consensus 269 ~k~~~Kye 276 (622)
T KOG3751|consen 269 RKNPAKYE 276 (622)
T ss_pred eecchhcc
Confidence 76654433
No 252
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=25.49 E-value=57 Score=31.46 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=38.9
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhc
Q 022228 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~ 63 (300)
+.+....||.+||+.+..+.+.. -...++-++|++..|.++.||.+.
T Consensus 168 vrcsa~~Tv~hlkkfl~~k~~~~-~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 168 LRCSAAATVNHLKKFLRKKMDNL-SNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred EeccHHHHHHHHHHHHHHHhccc-cchhhheeecCCccccchhhhhhh
Confidence 56777889999999999998721 345677889999999999999965
No 253
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=24.70 E-value=1.9e+02 Score=24.18 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=33.6
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
...+.|.-+.+-| -..|++++||.-+. ++-+|++.|.+
T Consensus 113 ~~~e~v~v~a~a~---v~~eeAr~aleeag-Dl~~A~k~l~~ 150 (153)
T COG4008 113 PPVEEVEVLADAF---VTPEEAREALEEAG-DLRTAMKILRM 150 (153)
T ss_pred CcHHHHHHHHHhc---CCHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 3467899999999 99999999999987 99999999865
No 254
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=24.02 E-value=2.6e+02 Score=20.28 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=35.5
Q ss_pred ChHHHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHh----C-CCCc
Q 022228 158 NLEGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS----G-IPEQ 204 (300)
Q Consensus 158 ~~e~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~----G-IP~~ 204 (300)
..+++|..+... | -..+=++++|.-+..|.+||+.-... | ||.+
T Consensus 11 ~q~~~v~~~~~~Tg---mn~~~s~~cLe~~~Wd~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 11 EQQEMVQAFSAQTG---MNAEYSQMCLEDNNWDYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCChh
Confidence 347788888776 7 88899999999999999999976554 3 8864
No 255
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=23.94 E-value=85 Score=27.81 Aligned_cols=27 Identities=7% Similarity=0.224 Sum_probs=24.0
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhc
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAY 187 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAaf 187 (300)
..++.+..|+.+| |.+.++.+|++...
T Consensus 147 ~~~e~~~aL~~LG---y~~~~a~~ai~~~~ 173 (194)
T PRK14605 147 ANSDILATLTALG---YSSSEAAKAISSLG 173 (194)
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHhh
Confidence 3578999999999 99999999999775
No 256
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=23.66 E-value=2e+02 Score=22.00 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCC-CCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 22 DTVFDVKMKIETVQGSDVYPA-AQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 22 ~TV~~LK~kI~~~~g~~~ip~-~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
.+..+|+.|..++.+ ++. ..+.|--.|-.++|+.-+.. +.+ +++.|++.
T Consensus 21 ~sL~eL~~K~~~~l~---l~~~~~lvL~eDGT~Vd~EeyF~t--Lp~-nt~l~vL~ 70 (79)
T cd06538 21 DSLEDLLNKVLDALL---LDCISSLVLDEDGTGVDTEEFFQA--LAD-NTVFMVLG 70 (79)
T ss_pred CCHHHHHHHHHHHcC---CCCccEEEEecCCcEEccHHHHhh--CCC-CcEEEEEC
Confidence 479999999999998 642 23444458888888765544 233 44444443
No 257
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=23.66 E-value=1.2e+02 Score=22.37 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=20.2
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHH
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALR 184 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALr 184 (300)
..+.++..|..|| |++++|..-|+
T Consensus 10 R~daA~dam~~lG---~~~~~v~~vl~ 33 (65)
T PF10440_consen 10 RIDAALDAMRQLG---FSKKQVRPVLK 33 (65)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 4567899999999 99999987665
No 258
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=23.45 E-value=94 Score=29.21 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=28.9
Q ss_pred HHHhccCCCCCHHHHHHHHHH-------------------hcCChHHHHHHHHhCCCCc
Q 022228 165 QILDMGGGTWDRDTVVRALRA-------------------AYNNPERAVEYLYSGIPEQ 204 (300)
Q Consensus 165 ~i~eMG~~~f~r~qv~~ALrA-------------------afnNpdrAvEyLl~GIP~~ 204 (300)
++.=+| .++++++.+.|+. -||+|....+||-.|+|--
T Consensus 208 ~V~f~G--~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI 264 (333)
T PRK09814 208 NISYKG--WFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVI 264 (333)
T ss_pred CeEEec--CCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEE
Confidence 333355 2388888887775 3899999999999999964
No 259
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=23.35 E-value=3.8e+02 Score=21.29 Aligned_cols=33 Identities=18% Similarity=0.027 Sum_probs=27.2
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhC
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQG 36 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g 36 (300)
|.|-..++...++.+..+.||.+|-..+.++..
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~ 37 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFY 37 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhc
Confidence 444445676778999999999999999999987
No 260
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=23.28 E-value=1.9e+02 Score=22.43 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=33.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeCCee
Q 022228 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQML-IYQGKV 53 (300)
Q Consensus 11 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL-i~~Gki 53 (300)
...+.+.|+...|=.++|+.|+..++ +.+...+- ++.||.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~---VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFG---VKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceeEEEEEEeCCce
Confidence 56899999999999999999999999 77777754 566654
No 261
>PF01577 Peptidase_S30: Potyvirus P1 protease; InterPro: IPR002540 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The potyviridae are a family of positive strand RNA viruses, members of which include Zucchini yellow mosaic virus, and Turnip mosaic virus (strain Japanese) which cause considerable losses of crops worldwide. This entry represents a C-terminal region from various plant potyvirus P1 proteins (found at the N terminus of the polyprotein). The C terminus of P1 is a serine peptidase belonging to MEROPS peptidase family S30 (clan PA(S)). It is the protease responsible for autocatalytic cleavage between P1 and the helper component protease, which is a cysteine peptidase belonging to MEROPS peptidase family C6 IPR001456 from INTERPRO [, ]. The P1 protein may be involved in virus-host interactions [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=23.26 E-value=2.2e+02 Score=25.63 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=51.1
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQML-IYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL-i~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
++|.++-..|..-.+|+..+.....|-..+....... ...+...+ =++|-+|.....+. ++-..+++++|-.+.
T Consensus 150 ~kv~~~He~G~~~r~Dl~~~~~~~~i~~~~a~~~~~~-~~~~~~~~~G~SG~vl~~~~~~~-~~~~~~~~FIVRGr~ 224 (245)
T PF01577_consen 150 LKVETKHERGKRKRRDLNIDEFTESILRLLAKKTYRG-RIVDDIKIKGDSGLVLPRRKLIG-FGRTRDDFFIVRGRH 224 (245)
T ss_pred EEEECCccCCCcccEECCccHHHHHHHHHHHhhcCCC-cccccceeccceEEEEeCCcccC-ccccCCCeEEEEecc
Confidence 3455566678777788888888888888887775432 44566677 34688887777666 776677777665543
No 262
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=22.55 E-value=2e+02 Score=21.72 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE
Q 022228 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI 48 (300)
Q Consensus 11 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi 48 (300)
.+.+.|.|+.+.|=.++|+.|+..++ +.+...+.+
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~---VkV~~Vnt~ 48 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFD---VKVEKVNTL 48 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CceEEEEeE
Confidence 36899999999999999999999999 777766543
No 263
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=22.33 E-value=98 Score=32.43 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=27.5
Q ss_pred EEEEEEcCCCcEEEEEeCCC---------CCHHHHHHHHHHHhCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPE---------DTVFDVKMKIETVQGS 37 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~---------~TV~~LK~kI~~~~g~ 37 (300)
++|+|+.-+|++..+....+ .|+.+||.+|+++.|.
T Consensus 249 ~~i~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~ 293 (603)
T PRK05841 249 LNITIQKEDGKKEDFVFTYGDAEKGENQFKTLGDLKKLLKEKTGL 293 (603)
T ss_pred EEEEEecCCCcEEEEEEeecCccccCCceeechhhhhhhhhcccc
Confidence 67889988888755544333 4799999999998883
No 264
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.96 E-value=95 Score=28.44 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=27.5
Q ss_pred cCCChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHH
Q 022228 155 AGNNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAV 194 (300)
Q Consensus 155 ~g~~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAv 194 (300)
.|++.++.|++|.+=+ | -++.|++|||| .||.-
T Consensus 6 ~gs~n~~LId~L~~~~---~Ir~~~v~~A~~a----~dR~d 39 (237)
T KOG1661|consen 6 SGSDNDDLIDNLRENK---IIRTRRVEQAMRA----TDRSD 39 (237)
T ss_pred cCcchHHHHHHHHhcc---hhHHHHHHHHHHh----hchhh
Confidence 4778899999999999 8 77789999998 56654
No 265
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.79 E-value=2.5e+02 Score=26.97 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=22.7
Q ss_pred EEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe
Q 022228 16 VEVK-PEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGK 52 (300)
Q Consensus 16 ieV~-~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~Gk 52 (300)
|.++ -..+|.+||..|-.+...- --.+-+-|+|+|.
T Consensus 18 I~FdGTGl~vfdlKrEII~q~Klg-~g~DFdLl~yn~~ 54 (427)
T COG5222 18 ISFDGTGLPVFDLKREIINQRKLG-SGKDFDLLFYNGE 54 (427)
T ss_pred eEeccCCccHHHHHHHHHHhhhcc-CCccceEEEecCC
Confidence 4444 3689999999885443210 1245567788885
No 266
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=21.78 E-value=1.9e+02 Score=23.94 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=29.7
Q ss_pred HHHHHHHHh-ccCCCCCHHHHHHHHHHhcCChHHHHHHH
Q 022228 160 EGAIQQILD-MGGGTWDRDTVVRALRAAYNNPERAVEYL 197 (300)
Q Consensus 160 e~~I~~i~e-MG~~~f~r~qv~~ALrAafnNpdrAvEyL 197 (300)
|+-|.=+|+ -| -+|+++++||.++.+++-.|+=-|
T Consensus 85 eeDIkLV~eQa~---VsreeA~kAL~e~~GDlaeAIm~L 120 (122)
T COG1308 85 EEDIKLVMEQAG---VSREEAIKALEEAGGDLAEAIMKL 120 (122)
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCcHHHHHHHh
Confidence 677888787 48 999999999999999998887555
No 267
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=21.67 E-value=3.2e+02 Score=21.74 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=23.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE
Q 022228 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI 48 (300)
Q Consensus 13 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi 48 (300)
...+.+.+++++.+++++|.+.... ++.++..||
T Consensus 30 i~~i~~~~~~~~~~~~~~l~~~i~~--~~~~~~viv 63 (116)
T TIGR00824 30 VGAVPFVPGENAETLQEKYNAALAD--LDTEEEVLF 63 (116)
T ss_pred eEEEEcCCCcCHHHHHHHHHHHHHh--cCCCCCEEE
Confidence 5667888899999999998777642 444444444
No 268
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=21.64 E-value=3.6e+02 Score=20.28 Aligned_cols=53 Identities=8% Similarity=0.029 Sum_probs=28.7
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCCeE--EEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 18 VKPEDTVFDVKMKIETVQGSDVYPAAQQM--LIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 18 V~~~~TV~~LK~kI~~~~g~~~ip~~~qk--Li~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
.....||.+|.+++.++...-...-...+ ...+...+.+. ++.|++||.|.++
T Consensus 24 ~~~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~t~L~dGDeVa~~ 78 (84)
T COG1977 24 LTVGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGL----DTPLKDGDEVAFF 78 (84)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeeccc----cccCCCCCEEEEe
Confidence 34467899999998666531000011111 12233444332 3468899999886
No 269
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=21.23 E-value=1.3e+02 Score=27.60 Aligned_cols=33 Identities=18% Similarity=0.441 Sum_probs=25.0
Q ss_pred EEEEEEcCC--C-----cEEEEEeCCCCCHHHHHHHHHHH
Q 022228 2 MKIFVKTLK--G-----TSFDVEVKPEDTVFDVKMKIETV 34 (300)
Q Consensus 2 M~I~VKtl~--g-----~~~~ieV~~~~TV~~LK~kI~~~ 34 (300)
|+|.|+-.+ + ++|.|+++++.||.++-.+|.++
T Consensus 6 ~~~~i~R~~~~~~~~~~q~y~v~~~~~~tvLdaL~~I~~~ 45 (249)
T PRK08640 6 VRLIIKRQDGPDSKPYWEEFEIPYRPNMNVISALMEIRRN 45 (249)
T ss_pred EEEEEEeeCCCCCCceeEEEEecCCCCCcHHHHHHHHHhc
Confidence 566666443 2 45888888999999999999764
No 270
>PF09030 Creb_binding: Creb binding; InterPro: IPR014744 This entry represents the interlocking domain of the eukaryotic nuclear receptor coactivators CREBP and p300. The interlocking domain forms a 3-helical non-globular array that forms interlocked heterodimers with its target. Nuclear receptors are ligand-activated transcription factors involved in the regulation of many processes, including development, reproduction and homeostasis. Nuclear receptor coactivators act to modulate the function of nuclear receptors. Coactivators associate with promoters and enhancers primarily through protein-protein contacts to facilitate the interaction between DNA-bound transcription factors and the transcription machinery. Many of these coactivators are structurally related, including CBP (CREB-binding protein) and p300 []. CBP and p300 both have histone acetyltransferase activity (2.3.1.48 from EC). CBP/p300 proteins function synergistically to activate transcription, acting to remodel chromatin and to recruit RNA polymerase II and the basal transcription machinery. CBP is required for proper cell cycle control, differentiation and apoptosis. The interaction of CBP/p300 with transcription factors involves several small domains. The IBiD domain in the C-terminal of CBP is responsible for CBP interaction with IRF-3, as well as with the adenoviral oncoprotein E1A, TIF-2 coactivator, and the IRF homologue KSHV IRF-1 []. ; GO: 0003713 transcription coactivator activity, 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0016573 histone acetylation, 0000123 histone acetyltransferase complex, 0005634 nucleus; PDB: 2KKJ_A 2C52_A 1JJS_A 2L14_A 1KBH_B 1ZOQ_C.
Probab=21.08 E-value=50 Score=26.54 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=24.5
Q ss_pred chhhhhCc---HHHHHHHHHHHhCCCchHHHHhc
Q 022228 264 SLDFLRNS---PQFQVLRAMVQANPQLFPCFKSW 294 (300)
Q Consensus 264 ~l~~Lr~~---pqf~~lR~~vq~nP~~L~~~lq~ 294 (300)
-|..||+- -|=+++-.++++||+|+-.|+-+
T Consensus 59 LLrTLkSPsSP~QQQQVLnILkSNPqLMAAFIKQ 92 (104)
T PF09030_consen 59 LLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIKQ 92 (104)
T ss_dssp HHHCHCSSSSCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 35667764 37889999999999999999754
No 271
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=21.03 E-value=78 Score=20.58 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHhcCChH
Q 022228 175 DRDTVVRALRAAYNNPE 191 (300)
Q Consensus 175 ~r~qv~~ALrAafnNpd 191 (300)
+...|++-|+|+.+||.
T Consensus 2 ~~~~V~~G~KAal~NPn 18 (36)
T PF10346_consen 2 DPNNVAGGYKAALHNPN 18 (36)
T ss_pred cHHHHHHHHHHHhcCCC
Confidence 45679999999999994
No 272
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=21.02 E-value=1.3e+02 Score=22.33 Aligned_cols=44 Identities=11% Similarity=0.273 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcc-cCCCcEEEEE
Q 022228 21 EDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENK-VAENSFVVIM 74 (300)
Q Consensus 21 ~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~g-I~~g~~I~v~ 74 (300)
-+|+++|++..+++.| +. ....+.-.|-. +.|.. |.+||.|+++
T Consensus 25 P~SleeLl~ia~~kfg---~~-~~~v~~~dgae------IdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 25 PDSLEELLKIASEKFG---FS-ATKVLNEDGAE------IDDIDVIRDGDHLYLV 69 (69)
T ss_pred CccHHHHHHHHHHHhC---CC-ceEEEcCCCCE------EeEEEEEEcCCEEEEC
Confidence 3699999999999999 53 22222223333 33443 5778888763
No 273
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=20.97 E-value=84 Score=29.88 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 174 WDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 174 f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
|+|+-+++||+.+.+|..+|.+.| ||.
T Consensus 286 ~Er~~I~~aL~~~~gn~~~aA~~L--GIs 312 (326)
T PRK11608 286 QEKELLQRSLQQAKFNQKRAAELL--GLT 312 (326)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh--CCC
Confidence 899999999999999999999998 664
No 274
>KOG4261 consensus Talin [Cytoskeleton]
Probab=20.96 E-value=2e+02 Score=31.13 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=47.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe------CCeecCCCCchhhcccCCCcEEE
Q 022228 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY------QGKVLKDDTTLEENKVAENSFVV 72 (300)
Q Consensus 11 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~------~GkiL~D~~tL~d~gI~~g~~I~ 72 (300)
+-.-++.++|+.+|-|--+.|.++......-+.+..|+. +|-.|+..++|.+|-+.++++|-
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~e 79 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLE 79 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccc
Confidence 556678999999999998888887652112255556553 57778999999999999999874
No 275
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.84 E-value=1.3e+02 Score=27.27 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=20.9
Q ss_pred CCCCC--eEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 40 YPAAQ--QMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 40 ip~~~--qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
+|+.. +.|.|+|..|.+-+.|..-.-.+.++++++.
T Consensus 156 lPv~~~Ki~lSf~~p~l~~~~~lv~~~~~~~~~v~~Ig 193 (236)
T KOG3073|consen 156 LPVNSRKIGLSFSGPKLSNVRDLVASLDDDDSVVFVIG 193 (236)
T ss_pred CCCCccEEeecCCCcccccHHhhccccCCCCCEEEEEe
Confidence 45544 4567899999876655554333334555543
No 276
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=20.14 E-value=1.2e+02 Score=24.87 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=35.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----CCCeEEEe-----------------CCee-cCCCCchhhcccCCCc
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYP----AAQQMLIY-----------------QGKV-LKDDTTLEENKVAENS 69 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip----~~~qkLi~-----------------~Gki-L~D~~tL~d~gI~~g~ 69 (300)
..+.|-...+.|+.+|-..|.+..-. .+ -=..++|| .|+. .+|++||.+++..-||
T Consensus 37 ~elqIYtW~d~TLrEL~~Lik~~~~~--~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGD 114 (120)
T PF06487_consen 37 NELQIYTWMDATLRELADLIKDVNPP--ARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGD 114 (120)
T ss_dssp TEEEEEE-TT-BHHHHHHHHHHH-HH--HHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-
T ss_pred CeeEEEEcccCCHHHHHHHHHHhCcc--cCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCC
Confidence 35667778899999998888764210 00 01234444 2332 3677899999999999
Q ss_pred EEEEEE
Q 022228 70 FVVIML 75 (300)
Q Consensus 70 ~I~v~v 75 (300)
+|.|-+
T Consensus 115 yidvaI 120 (120)
T PF06487_consen 115 YIDVAI 120 (120)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 998753
No 277
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=20.11 E-value=2.1e+02 Score=20.14 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhcccCCCcEEEEE
Q 022228 21 EDTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 21 ~~TV~~LK~kI~~~~g~~~ip~~~qkLi~--~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
..|...|.+.|.++.+ ++-. .|-+| .|+.+. .|.+ +++|...++.
T Consensus 8 ~~s~e~lL~~it~~v~---l~~g-Vr~lyt~~G~~V~---~l~~--l~dg~~yVa~ 54 (60)
T PF03607_consen 8 FRSFEQLLDEITEKVQ---LPSG-VRKLYTLDGKRVK---SLDE--LEDGGSYVAS 54 (60)
T ss_dssp HSSHHHHHHHHHHSSS---STTS--SEEEETTSSEES---SGGG--S-TTEEEEEE
T ss_pred hcCHHHHHHHHHhhcC---CCcc-cceEECCCCCEeC---CHHH--HCCCCEEEEE
Confidence 3578899999999887 6655 66566 677663 4555 6677766554
Done!