Query 022228
Match_columns 300
No_of_seqs 332 out of 1374
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:02:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 7.2E-53 2.5E-57 403.7 24.1 255 1-296 7-268 (368)
2 3m62_B UV excision repair prot 99.8 3.8E-21 1.3E-25 153.5 8.4 78 1-81 1-78 (106)
3 4dwf_A HLA-B-associated transc 99.8 1.3E-19 4.4E-24 139.5 10.1 76 1-80 5-80 (90)
4 3plu_A Ubiquitin-like modifier 99.8 1.4E-19 4.7E-24 140.8 9.8 72 1-75 21-92 (93)
5 3phx_B Ubiquitin-like protein 99.8 3.6E-19 1.2E-23 133.6 11.2 75 1-78 4-78 (79)
6 2lxa_A Ubiquitin-like protein 99.8 6.1E-20 2.1E-24 141.8 6.8 75 1-78 1-79 (87)
7 2wyq_A HHR23A, UV excision rep 99.8 4.3E-19 1.5E-23 134.7 11.0 76 1-79 5-83 (85)
8 1uel_A HHR23B, UV excision rep 99.8 6.3E-19 2.2E-23 137.6 11.8 77 2-81 1-80 (95)
9 4fbj_B NEDD8; effector-HOST ta 99.8 3.4E-19 1.2E-23 137.2 9.7 78 2-82 1-78 (88)
10 1wx7_A Ubiquilin 3; ubiquitin- 99.8 8.1E-19 2.8E-23 139.6 12.0 77 1-81 17-93 (106)
11 3v6c_B Ubiquitin; structural g 99.8 6.7E-19 2.3E-23 136.1 10.7 75 1-78 17-91 (91)
12 2kk8_A Uncharacterized protein 99.8 6.1E-19 2.1E-23 135.0 10.1 72 2-76 11-83 (84)
13 1uh6_A Ubiquitin-like 5; beta- 99.8 2.8E-19 9.7E-24 141.3 8.4 72 1-75 28-99 (100)
14 4a20_A Ubiquitin-like protein 99.8 5.6E-19 1.9E-23 139.3 9.2 74 2-78 20-97 (98)
15 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 2E-18 6.9E-23 134.2 10.6 77 2-81 2-78 (96)
16 3dbh_I NEDD8; cell cycle, acti 99.8 1.8E-18 6.2E-23 132.0 9.9 76 1-79 12-87 (88)
17 4hcn_B Polyubiquitin, ubiquiti 99.8 1.9E-18 6.4E-23 135.6 10.0 76 1-79 22-97 (98)
18 1wy8_A NP95-like ring finger p 99.8 5E-18 1.7E-22 130.1 12.0 77 1-80 7-85 (89)
19 2dzi_A Ubiquitin-like protein 99.8 3E-18 1E-22 128.6 10.1 74 1-77 7-80 (81)
20 3mtn_B UBA80, ubcep1, ubiquiti 99.8 4.1E-18 1.4E-22 128.9 10.9 77 1-80 3-79 (85)
21 1ttn_A DC-UBP, dendritic cell- 99.8 2.3E-18 7.7E-23 137.2 9.9 78 1-81 23-100 (106)
22 2faz_A Ubiquitin-like containi 99.8 3.4E-18 1.2E-22 127.8 10.3 74 1-77 2-77 (78)
23 1ndd_A NEDD8, protein (ubiquit 99.8 4.2E-18 1.4E-22 125.9 10.5 74 2-78 1-74 (76)
24 3n3k_B Ubiquitin; hydrolase, p 99.8 2.2E-18 7.7E-23 130.5 9.1 77 1-80 3-79 (85)
25 4eew_A Large proline-rich prot 99.8 3.1E-18 1.1E-22 131.2 9.8 72 1-76 17-88 (88)
26 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 5.3E-18 1.8E-22 129.4 10.9 76 1-79 7-82 (87)
27 2uyz_B Small ubiquitin-related 99.8 3.9E-18 1.3E-22 127.9 9.7 75 2-79 4-78 (79)
28 2hj8_A Interferon-induced 17 k 99.8 2.6E-18 9E-23 132.1 8.9 75 2-79 5-79 (88)
29 1wia_A Hypothetical ubiquitin- 99.7 5.9E-18 2E-22 131.7 10.7 75 1-81 7-82 (95)
30 3a9j_A Ubiquitin; protein comp 99.7 7.3E-18 2.5E-22 124.5 10.5 75 2-79 1-75 (76)
31 1wgd_A Homocysteine-responsive 99.7 5.9E-18 2E-22 131.3 9.9 77 1-80 7-89 (93)
32 1v2y_A 3300001G02RIK protein; 99.7 3.3E-18 1.1E-22 136.4 8.6 78 1-81 7-100 (105)
33 1v5o_A 1700011N24RIK protein; 99.7 8.8E-18 3E-22 132.8 11.0 77 1-80 7-88 (102)
34 1wyw_B Ubiquitin-like protein 99.7 5.8E-18 2E-22 132.7 9.4 76 1-79 21-96 (97)
35 1sif_A Ubiquitin; hydrophobic 99.7 8.9E-18 3E-22 129.2 9.6 75 2-79 10-84 (88)
36 2kan_A Uncharacterized protein 99.7 1.7E-17 5.9E-22 129.5 11.3 76 1-80 15-91 (94)
37 1wju_A NEDD8 ultimate buster-1 99.7 9.8E-18 3.4E-22 132.4 9.7 72 2-76 16-91 (100)
38 1wx8_A Riken cDNA 4931431F19; 99.7 5.7E-18 1.9E-22 132.0 8.1 76 1-80 17-92 (96)
39 3vdz_A Ubiquitin-40S ribosomal 99.7 1.8E-17 6.2E-22 133.1 11.2 76 1-79 35-110 (111)
40 2bwf_A Ubiquitin-like protein 99.7 2.4E-17 8.1E-22 122.5 10.8 71 2-76 5-75 (77)
41 1yqb_A Ubiquilin 3; structural 99.7 1.4E-17 4.7E-22 131.5 10.0 76 1-80 22-97 (100)
42 1ify_A HHR23A, UV excision rep 99.7 2.7E-18 9.1E-23 118.7 5.1 49 152-203 1-49 (49)
43 1j8c_A Ubiquitin-like protein 99.7 2.1E-17 7.2E-22 135.6 11.1 77 1-81 32-108 (125)
44 2klc_A Ubiquilin-1; ubiquitin- 99.7 2.8E-17 9.5E-22 129.9 11.4 75 1-79 25-99 (101)
45 1wgh_A Ubiquitin-like 3, HCG-1 99.7 7.3E-17 2.5E-21 130.8 12.7 77 1-78 16-100 (116)
46 1yx5_B Ubiquitin; proteasome, 99.7 3.8E-17 1.3E-21 127.9 10.6 76 2-80 1-76 (98)
47 2l7r_A Ubiquitin-like protein 99.7 2.9E-17 9.9E-22 127.7 9.3 74 1-79 19-92 (93)
48 1wgg_A Ubiquitin carboxyl-term 99.7 2.2E-17 7.4E-22 129.5 8.5 73 1-78 7-80 (96)
49 3b1l_X E3 ubiquitin-protein li 99.5 8.5E-19 2.9E-23 130.4 0.0 75 2-79 1-75 (76)
50 2gow_A HCG-1 protein, ubiquiti 99.7 1.1E-16 3.7E-21 131.4 11.4 75 1-78 17-101 (125)
51 2ojr_A Ubiquitin; lanthide-bin 99.7 1.4E-16 4.8E-21 127.8 11.8 76 1-79 35-110 (111)
52 1wxv_A BAG-family molecular ch 99.7 1.5E-16 5E-21 123.1 10.9 74 1-78 7-86 (92)
53 3l0w_B Monoubiquitinated proli 99.7 1.2E-16 4.3E-21 137.4 11.2 77 2-81 1-77 (169)
54 1x1m_A Ubiquitin-like protein 99.7 1.1E-16 3.6E-21 127.7 9.4 74 2-78 13-101 (107)
55 1se9_A Ubiquitin family; ubiqu 99.7 1.9E-16 6.4E-21 129.9 10.2 79 2-80 17-106 (126)
56 3rt3_B Ubiquitin-like protein 99.7 2.4E-16 8.2E-21 133.2 11.2 76 2-80 82-157 (159)
57 1v5t_A 8430435I17RIK protein; 99.7 1.6E-16 5.5E-21 122.8 8.9 73 1-77 7-83 (90)
58 2kdb_A Homocysteine-responsive 99.7 1E-16 3.4E-21 126.5 7.8 71 2-74 24-99 (99)
59 3u30_A Ubiquitin, linear DI-ub 99.7 3.2E-16 1.1E-20 134.4 11.3 75 1-78 20-94 (172)
60 1v86_A DNA segment, CHR 7, way 99.7 1.2E-16 4.2E-21 124.8 7.7 72 1-77 17-88 (95)
61 2fnj_B Transcription elongatio 99.7 1.2E-16 4.2E-21 129.6 8.0 72 2-76 1-80 (118)
62 2kdi_A Ubiquitin, vacuolar pro 99.7 3.6E-16 1.2E-20 126.2 10.6 76 2-80 10-85 (114)
63 3rt3_B Ubiquitin-like protein 99.7 2.3E-16 8E-21 133.3 9.9 73 2-77 3-77 (159)
64 4ajy_B Transcription elongatio 99.7 1.5E-16 5.2E-21 128.8 8.0 73 2-77 1-81 (118)
65 3m63_B Ubiquitin domain-contai 99.7 5.5E-17 1.9E-21 128.3 5.2 72 2-77 29-100 (101)
66 1we6_A Splicing factor, putati 99.7 2.5E-16 8.5E-21 126.2 9.1 77 1-80 27-107 (111)
67 2kd0_A LRR repeats and ubiquit 99.6 5.1E-16 1.7E-20 118.8 9.5 70 4-76 14-83 (85)
68 3q3f_A Ribonuclease/ubiquitin 99.6 4.1E-16 1.4E-20 136.5 10.1 78 1-81 105-182 (189)
69 4dbg_A Ranbp-type and C3HC4-ty 99.6 9.5E-16 3.2E-20 122.0 10.4 73 2-77 25-100 (105)
70 2daf_A FLJ35834 protein; hypot 99.6 1.6E-15 5.4E-20 122.4 10.7 75 2-79 16-91 (118)
71 3u5e_m 60S ribosomal protein L 99.6 3.2E-17 1.1E-21 134.8 0.0 76 2-80 1-76 (128)
72 2dzj_A Synaptic glycoprotein S 99.6 5.2E-16 1.8E-20 119.8 6.6 70 1-73 10-85 (88)
73 3b08_A Polyubiquitin-C, ubiqui 99.6 2.8E-15 9.6E-20 124.8 10.7 73 2-77 1-73 (152)
74 3b08_A Polyubiquitin-C, ubiqui 99.6 3.5E-15 1.2E-19 124.1 11.3 75 2-79 77-151 (152)
75 3u30_A Ubiquitin, linear DI-ub 99.6 1.9E-15 6.5E-20 129.6 9.2 75 2-79 97-171 (172)
76 1we7_A SF3A1 protein; structur 99.6 4.1E-15 1.4E-19 119.9 10.5 76 2-80 26-111 (115)
77 3u5c_f 40S ribosomal protein S 99.6 1.9E-16 6.5E-21 134.1 1.0 77 2-81 1-77 (152)
78 2dzm_A FAS-associated factor 1 99.6 5.7E-15 2E-19 116.7 7.4 72 2-77 9-82 (100)
79 3ai5_A Yeast enhanced green fl 99.5 1.4E-14 4.9E-19 135.3 10.6 75 1-78 233-307 (307)
80 4b6w_A Tubulin-specific chaper 99.5 1.1E-14 3.7E-19 112.0 7.0 74 2-78 3-85 (86)
81 2kjr_A CG11242; UBL, ubiquitin 99.5 1.1E-13 3.8E-18 108.2 9.9 70 2-74 16-93 (95)
82 1wf9_A NPL4 family protein; be 99.5 4.9E-14 1.7E-18 112.3 7.7 71 2-76 8-94 (107)
83 2kj6_A Tubulin folding cofacto 99.5 2.1E-13 7.2E-18 107.1 9.1 72 2-76 15-95 (97)
84 1vej_A Riken cDNA 4931431F19; 99.5 1.4E-13 4.9E-18 102.5 7.5 46 156-204 26-72 (74)
85 1v6e_A Cytoskeleton-associated 99.5 1.9E-13 6.5E-18 106.4 8.6 74 1-77 7-88 (95)
86 2g3q_A Protein YBL047C; endocy 99.4 1.1E-13 3.6E-18 92.8 5.7 40 159-201 4-43 (43)
87 2xzm_9 RPS31E; ribosome, trans 99.4 8E-15 2.8E-19 128.0 0.0 71 2-80 1-71 (189)
88 2io1_B Small ubiquitin-related 99.4 4.4E-13 1.5E-17 104.6 9.4 76 2-80 8-83 (94)
89 1vg5_A RSGI RUH-014, rhomboid 99.4 1.7E-13 5.8E-18 102.0 6.3 44 156-202 26-69 (73)
90 2bwb_A Ubiquitin-like protein 99.4 2.8E-13 9.7E-18 92.1 5.6 41 157-200 5-46 (46)
91 2kzr_A Ubiquitin thioesterase 99.4 3.2E-13 1.1E-17 103.2 6.2 71 2-76 1-77 (86)
92 1wm3_A Ubiquitin-like protein 99.4 2E-12 6.8E-17 95.8 10.0 71 2-75 2-72 (72)
93 1t0y_A Tubulin folding cofacto 99.4 1.5E-12 5E-17 106.1 9.0 73 2-77 7-87 (122)
94 2io0_B Small ubiquitin-related 99.4 2.9E-12 9.8E-17 99.4 10.2 75 2-79 6-80 (91)
95 2knz_A Ubiquilin-4; cytoplasm, 99.4 7.1E-13 2.4E-17 92.8 6.1 43 157-202 9-52 (53)
96 3shq_A UBLCP1; phosphatase, hy 99.4 5.3E-13 1.8E-17 125.6 6.8 72 2-77 6-80 (320)
97 1veg_A NEDD8 ultimate buster-1 99.4 7.5E-13 2.6E-17 100.6 6.1 44 159-205 29-75 (83)
98 3a4r_A Nfatc2-interacting prot 99.4 6.2E-12 2.1E-16 94.9 10.7 70 2-74 8-78 (79)
99 2jy5_A Ubiquilin-1; UBA, alter 99.3 1.4E-12 4.8E-17 90.9 6.2 42 156-200 9-51 (52)
100 2d07_B Ubiquitin-like protein 99.3 7E-12 2.4E-16 97.5 10.0 74 2-78 18-91 (93)
101 1wji_A Tudor domain containing 99.3 2.1E-12 7.1E-17 93.6 5.7 42 159-203 9-50 (63)
102 2dna_A Unnamed protein product 99.3 2.2E-12 7.5E-17 94.1 5.8 46 156-204 16-62 (67)
103 1wz0_A Ubiquitin-like protein 99.3 7.9E-12 2.7E-16 99.3 9.2 75 2-79 25-99 (104)
104 1wr1_B Ubiquitin-like protein 99.3 2.9E-12 9.8E-17 91.3 5.5 43 156-201 14-57 (58)
105 2dak_A Ubiquitin carboxyl-term 99.3 2.1E-12 7E-17 93.6 4.3 44 158-204 8-51 (63)
106 2k8h_A Small ubiquitin protein 99.3 1.3E-11 4.3E-16 99.0 8.3 75 2-79 27-101 (110)
107 2eke_C Ubiquitin-like protein 99.2 2.3E-11 7.9E-16 96.9 9.3 73 2-78 32-104 (106)
108 1wiv_A UBP14, ubiquitin-specif 99.2 9.3E-12 3.2E-16 92.7 5.8 41 159-202 29-69 (73)
109 2crn_A Ubash3A protein; compac 99.2 5E-12 1.7E-16 91.8 3.9 45 157-204 7-52 (64)
110 2dag_A Ubiquitin carboxyl-term 99.2 1.1E-11 3.6E-16 92.6 5.8 43 159-204 9-52 (74)
111 1z96_A DNA-damage, UBA-domain 99.2 1.2E-11 3.9E-16 81.2 5.1 39 157-198 2-40 (40)
112 2cpw_A CBL-interacting protein 99.2 1.1E-11 3.7E-16 90.1 4.2 41 160-203 20-61 (64)
113 2ekk_A UBA domain from E3 ubiq 99.2 1.6E-11 5.6E-16 83.6 4.8 38 159-200 9-46 (47)
114 1whc_A RSGI RUH-027, UBA/UBX 3 99.2 1.1E-11 3.9E-16 90.0 4.1 42 160-204 10-52 (64)
115 1wjn_A Tubulin-folding protein 99.2 9.1E-11 3.1E-15 91.4 8.3 74 1-77 9-93 (97)
116 2f4m_B UV excision repair prot 99.2 1.7E-11 5.8E-16 87.9 3.6 32 263-294 2-33 (61)
117 2dai_A Ubadc1, ubiquitin assoc 99.1 5.2E-11 1.8E-15 90.7 5.4 43 159-204 29-71 (83)
118 1wgn_A UBAP1, ubiquitin associ 99.1 5.7E-11 1.9E-15 84.3 5.2 38 160-200 20-57 (63)
119 1pve_A HHR23B, UV excision rep 99.1 9.6E-12 3.3E-16 91.9 0.8 33 262-294 3-35 (72)
120 1vek_A UBP14, ubiquitin-specif 99.1 7.3E-11 2.5E-15 90.2 5.6 43 159-204 29-72 (84)
121 2dah_A Ubiquilin-3; UBA domain 99.1 1.4E-10 4.7E-15 81.4 5.0 41 158-201 8-49 (54)
122 2lbc_A Ubiquitin carboxyl-term 99.0 2.6E-10 9E-15 93.3 5.8 41 159-202 78-118 (126)
123 2cwb_A Chimera of immunoglobul 99.0 3.3E-10 1.1E-14 90.1 6.0 43 157-202 64-107 (108)
124 3kyd_D Small ubiquitin-related 99.0 2.2E-09 7.6E-14 86.5 10.3 73 2-77 41-113 (115)
125 2dkl_A Trinucleotide repeat co 98.9 7.5E-10 2.6E-14 84.7 5.5 39 160-201 22-60 (85)
126 1dv0_A DNA repair protein HHR2 98.9 4.5E-10 1.5E-14 76.6 1.5 42 158-202 3-44 (47)
127 2qsf_X RAD23, UV excision repa 98.9 5.8E-10 2E-14 95.6 2.3 34 261-294 21-55 (171)
128 2ooa_A E3 ubiquitin-protein li 98.8 6.2E-09 2.1E-13 71.4 5.2 38 159-199 11-48 (52)
129 3pge_A SUMO-modified prolifera 98.8 3.2E-08 1.1E-12 86.9 10.4 76 2-81 30-105 (200)
130 2d9s_A CBL E3 ubiquitin protei 98.7 1.1E-08 3.9E-13 70.4 5.3 38 159-199 9-46 (53)
131 3tix_A Ubiquitin-like protein 98.7 1.8E-08 6.2E-13 87.6 7.7 75 2-80 58-132 (207)
132 4ae4_A Ubiquitin-associated pr 98.7 9.4E-09 3.2E-13 83.2 4.9 39 159-200 76-114 (118)
133 2oo9_A E3 ubiquitin-protein li 98.7 2.6E-08 9E-13 66.3 5.3 41 156-199 1-41 (46)
134 2pjh_A Protein NPL4, nuclear p 98.6 1.6E-08 5.5E-13 76.3 3.7 70 1-74 4-78 (80)
135 3goe_A DNA repair protein RAD6 98.6 3.1E-07 1.1E-11 68.5 9.9 71 2-75 10-81 (82)
136 2juj_A E3 ubiquitin-protein li 98.6 5.6E-08 1.9E-12 67.1 5.1 39 159-200 7-45 (56)
137 2jxx_A Nfatc2-interacting prot 98.5 6.2E-07 2.1E-11 70.1 9.8 70 2-74 26-96 (97)
138 3v7o_A Minor nucleoprotein VP3 98.4 2.2E-08 7.6E-13 88.2 0.0 75 2-80 22-96 (227)
139 3k9o_A Ubiquitin-conjugating e 98.4 1.6E-07 5.4E-12 82.5 4.9 42 155-199 159-200 (201)
140 1wj7_A Hypothetical protein (R 98.4 4.3E-07 1.5E-11 71.4 5.8 43 158-203 38-81 (104)
141 2l76_A Nfatc2-interacting prot 98.4 3.1E-06 1.1E-10 65.6 10.2 72 2-77 22-93 (95)
142 4ae4_A Ubiquitin-associated pr 98.3 5.9E-07 2E-11 72.6 5.1 39 158-199 7-45 (118)
143 2cp8_A NEXT to BRCA1 gene 1 pr 98.3 9E-07 3.1E-11 61.6 4.5 42 156-200 6-48 (54)
144 3uf8_A Ubiquitin-like protein 98.2 4.8E-06 1.6E-10 73.5 8.9 74 2-79 22-95 (209)
145 2lbc_A Ubiquitin carboxyl-term 98.2 8.2E-07 2.8E-11 72.4 3.7 41 160-203 4-45 (126)
146 2qsf_X RAD23, UV excision repa 98.1 2.5E-06 8.4E-11 73.0 4.5 41 157-200 128-168 (171)
147 4efo_A Serine/threonine-protei 98.1 1.6E-05 5.4E-10 61.7 8.6 68 4-74 15-86 (94)
148 2cos_A Serine/threonine protei 98.0 8.9E-06 3E-10 56.1 5.2 39 158-199 8-47 (54)
149 3ix6_A TS, tsase, thymidylate 98.0 9.7E-07 3.3E-11 83.8 0.0 74 2-79 22-95 (360)
150 2bps_A YUKD protein; ubiquitin 97.9 1.8E-05 6.2E-10 59.7 6.7 71 2-73 5-80 (81)
151 2kc2_A Talin-1, F1; FERM, adhe 97.9 2.2E-05 7.7E-10 64.1 6.8 68 3-73 13-119 (128)
152 1oqy_A HHR23A, UV excision rep 97.8 4.9E-06 1.7E-10 79.4 1.8 41 157-200 323-363 (368)
153 2al3_A TUG long isoform; TUG U 97.8 8.7E-05 3E-09 56.9 8.2 75 2-79 10-84 (90)
154 4da1_A Protein phosphatase 1K, 97.8 3.4E-06 1.2E-10 80.7 0.0 74 2-79 31-104 (389)
155 3qx1_A FAS-associated factor 1 97.6 0.00025 8.4E-09 53.3 8.1 69 2-74 8-81 (84)
156 3e46_A Ubiquitin-conjugating e 97.5 7E-05 2.4E-09 68.0 5.1 42 155-199 211-252 (253)
157 2dzk_A UBX domain-containing p 97.5 0.0011 3.7E-08 52.4 11.4 72 2-76 14-90 (109)
158 1wj4_A KIAA0794 protein; UBX d 97.1 0.0014 4.9E-08 53.0 7.7 70 2-75 44-118 (124)
159 2cr5_A Reproduction 8; UBX dom 96.9 0.0093 3.2E-07 46.9 10.2 70 2-75 24-97 (109)
160 1s3s_G P47 protein; AAA ATPase 96.7 0.0058 2E-07 49.5 7.9 67 2-70 53-122 (127)
161 1wgl_A TOLL-interacting protei 96.7 0.0019 6.6E-08 45.6 4.3 40 158-200 8-49 (59)
162 2pwq_A Ubiquitin conjugating e 96.4 0.00056 1.9E-08 60.6 0.0 41 158-201 176-216 (216)
163 2daj_A KIAA0977 protein, COBL- 96.4 0.024 8.1E-07 42.8 8.8 71 2-78 11-84 (91)
164 1otr_A Protein CUE2; protein-p 96.3 0.0065 2.2E-07 41.3 4.9 39 159-200 4-44 (49)
165 2dhy_A CUE domain-containing p 96.1 0.018 6.1E-07 41.7 6.9 44 154-200 13-58 (67)
166 4e71_A Plexin-B2, MM1; transme 96.0 0.053 1.8E-06 42.9 9.8 73 2-75 12-109 (111)
167 3ihp_A Ubiquitin carboxyl-term 96.0 0.0054 1.8E-07 64.4 5.1 42 157-201 718-759 (854)
168 1ryj_A Unknown; beta/alpha pro 95.6 0.1 3.5E-06 37.5 9.3 62 1-75 4-65 (70)
169 2di0_A Activating signal coint 95.6 0.034 1.2E-06 40.6 6.5 50 154-206 8-60 (71)
170 2l32_A Small archaeal modifier 95.6 0.03 1E-06 41.0 6.3 60 2-74 1-60 (74)
171 2r2o_A Plexin-B1; effector dom 95.5 0.076 2.6E-06 43.6 9.0 65 12-77 41-129 (138)
172 2cp9_A EF-TS, EF-TSMT, elongat 95.2 0.03 1E-06 40.1 5.1 36 160-198 10-46 (64)
173 3jyu_A Ubiquitin carboxyl-term 94.8 0.19 6.6E-06 44.4 10.5 61 14-77 154-221 (231)
174 1vjk_A Molybdopterin convertin 94.7 0.26 8.7E-06 37.5 9.6 68 2-74 10-92 (98)
175 3h6n_A Plexin-D1; structural g 94.6 0.27 9.3E-06 39.7 9.9 66 10-76 15-104 (127)
176 4e74_A Plexin-A4; RBD, structu 94.4 0.2 6.8E-06 40.0 8.3 65 12-77 27-115 (117)
177 4a3p_A Ubiquitin carboxyl-term 94.3 0.22 7.5E-06 43.6 9.5 61 14-77 142-209 (217)
178 3ivf_A Talin-1; FERM domain, c 93.7 0.28 9.4E-06 46.0 9.5 71 3-74 5-82 (371)
179 3rpf_C Molybdopterin convertin 93.7 0.15 5E-06 36.9 5.9 65 2-74 1-68 (74)
180 2qjl_A URM1, ubiquitin-related 92.5 0.82 2.8E-05 34.7 8.9 69 1-74 1-93 (99)
181 1tyg_B YJBS; alpha beta barrel 92.3 0.19 6.6E-06 37.9 5.0 61 2-75 21-82 (87)
182 3po0_A Small archaeal modifier 92.2 0.93 3.2E-05 33.5 8.8 58 12-74 18-83 (89)
183 1q02_A Sequestosome 1; helical 92.2 0.09 3.1E-06 35.8 2.7 37 158-197 9-47 (52)
184 3ihp_A Ubiquitin carboxyl-term 92.1 0.1 3.5E-06 54.7 4.3 42 159-203 652-694 (854)
185 1oey_A P67-PHOX, neutrophil cy 91.9 0.38 1.3E-05 36.0 6.2 45 2-51 6-50 (83)
186 1wgk_A Riken cDNA 2900073H19 p 91.8 0.24 8.1E-06 39.2 5.2 69 2-75 12-103 (114)
187 2l52_A Methanosarcina acetivor 91.6 0.54 1.9E-05 35.9 7.0 70 1-74 3-93 (99)
188 1ef1_A Moesin; membrane, FERM 91.2 1.2 4.1E-05 40.0 10.0 74 2-79 2-81 (294)
189 1h4r_A Merlin; FERM, neurofibr 91.1 1.3 4.5E-05 40.2 10.3 73 2-78 23-100 (314)
190 4dbg_B Ring finger protein 31; 91.1 0.14 4.8E-06 42.8 3.3 37 159-197 102-138 (162)
191 1ip9_A BEM1 protein; ubiquitin 90.0 0.67 2.3E-05 34.8 5.9 42 2-49 13-54 (85)
192 3dwg_C 9.5 kDa culture filtrat 89.8 1 3.5E-05 33.5 7.0 71 2-74 1-87 (93)
193 2juo_A GA-binding protein alph 89.4 1.1 3.8E-05 33.6 6.6 60 16-78 7-66 (89)
194 3kuz_A Plexin-C1; structural g 89.4 1.4 4.7E-05 35.5 7.6 60 12-74 39-124 (126)
195 2i1j_A Moesin; FERM, coiled-co 88.7 1.7 5.8E-05 43.5 9.6 75 2-79 5-84 (575)
196 3hm6_X Plexin-B1; structural g 88.3 2 6.7E-05 43.3 9.5 64 13-77 275-362 (644)
197 3ig3_A Plxna3 protein; plexin 88.3 2.5 8.5E-05 42.5 10.2 75 2-77 234-335 (627)
198 3ivf_A Talin-1; FERM domain, c 87.5 2.8 9.6E-05 39.0 9.8 73 2-76 86-167 (371)
199 1f0z_A THis protein; ubiquitin 86.6 0.89 3.1E-05 31.8 4.5 60 2-74 1-60 (66)
200 2kmm_A Guanosine-3',5'-BIS(dip 86.2 1.5 5.1E-05 30.8 5.6 63 2-76 1-63 (73)
201 1vd2_A Protein kinase C, IOTA 85.7 3.3 0.00011 31.2 7.5 47 2-52 7-54 (89)
202 3qij_A Protein 4.1; cytoskelet 85.5 3.1 0.00011 37.7 8.7 70 2-73 18-92 (296)
203 2k5p_A THis protein, thiamine- 85.1 0.78 2.7E-05 33.6 3.7 63 2-75 1-64 (78)
204 1tte_A Ubiquitin-conjugating e 84.8 0.59 2E-05 41.0 3.3 24 160-186 170-193 (215)
205 2kl0_A Putative thiamin biosyn 84.6 0.8 2.7E-05 33.1 3.5 60 2-75 1-60 (73)
206 2c7h_A RBBP6, retinoblastoma-b 84.4 2.5 8.5E-05 31.8 6.1 44 1-47 6-51 (86)
207 2ns5_A Partitioning-defective 83.7 11 0.00039 28.1 9.5 73 1-75 2-81 (85)
208 1ixs_A Holliday junction DNA h 83.4 0.92 3.2E-05 31.9 3.2 28 156-186 14-41 (62)
209 1ufz_A Hypothetical protein BA 82.9 2.8 9.6E-05 31.2 5.8 41 160-200 35-75 (83)
210 1p3q_Q VPS9P, vacuolar protein 82.8 0.46 1.6E-05 32.7 1.4 40 157-199 10-51 (54)
211 2hj1_A Hypothetical protein; s 81.5 2 7E-05 32.9 4.8 70 1-75 12-84 (97)
212 2q5w_D Molybdopterin convertin 81.4 3.1 0.00011 29.5 5.6 54 12-74 16-71 (77)
213 1wgr_A Growth factor receptor- 81.1 5.9 0.0002 30.5 7.3 73 2-76 10-92 (100)
214 2k9x_A Tburm1, uncharacterized 81.1 0.33 1.1E-05 38.2 0.1 69 2-75 5-97 (110)
215 1aip_C EF-TS, elongation facto 80.0 2.5 8.5E-05 36.6 5.4 37 160-199 4-41 (196)
216 1xb2_B EF-TS, elongation facto 79.4 2.1 7.1E-05 39.2 4.9 36 161-199 6-42 (291)
217 4eut_A Serine/threonine-protei 79.0 8.5 0.00029 35.4 9.3 55 10-67 320-376 (396)
218 1y8x_B Ubiquitin-activating en 78.5 4 0.00014 31.3 5.6 59 13-74 6-82 (98)
219 1v92_A NSFL1 cofactor P47; 3-h 78.5 4.4 0.00015 26.0 5.1 37 159-198 5-42 (46)
220 2cu3_A Unknown function protei 78.5 2.7 9.3E-05 29.1 4.3 56 9-75 4-59 (64)
221 3onh_A Ubiquitin-activating en 77.6 7.3 0.00025 31.3 7.0 57 15-75 9-78 (127)
222 1tr8_A Conserved protein (MTH1 77.4 2.7 9.2E-05 32.5 4.3 35 160-197 66-101 (102)
223 4dbg_B Ring finger protein 31; 76.5 2.2 7.6E-05 35.6 3.8 29 171-199 72-100 (162)
224 1fm0_D Molybdopterin convertin 76.1 10 0.00035 26.9 7.1 57 12-74 17-75 (81)
225 2dal_A Protein KIAA0794; FAS a 71.1 7.1 0.00024 27.1 4.9 39 158-199 14-53 (62)
226 2inc_C TOUB protein; DIIRON, 4 70.9 28 0.00097 25.8 8.3 62 14-76 15-82 (83)
227 3qa8_A MGC80376 protein; kinas 70.1 4.8 0.00017 41.0 5.4 52 10-64 320-372 (676)
228 1wgy_A RAP guanine nucleotide 69.7 23 0.00079 27.4 7.9 69 5-76 13-86 (104)
229 2g1e_A Hypothetical protein TA 67.6 16 0.00054 26.4 6.5 58 16-74 19-84 (90)
230 2kvr_A Ubiquitin carboxyl-term 67.3 5 0.00017 32.2 3.9 32 15-49 59-90 (130)
231 3ge3_C Toluene-4-monooxygenase 66.9 25 0.00084 26.1 7.2 61 14-75 17-82 (84)
232 1rws_A Hypothetical protein PF 65.7 2.1 7.1E-05 30.9 1.2 48 15-74 24-71 (77)
233 4g3o_A E3 ubiquitin-protein li 64.7 13 0.00044 25.8 5.0 42 155-200 13-56 (58)
234 3hvz_A Uncharacterized protein 62.2 24 0.00081 25.6 6.4 63 3-77 7-69 (78)
235 2eel_A Cell death activator CI 61.8 48 0.0017 24.9 9.1 50 22-77 28-79 (91)
236 3au4_A Myosin-X; protein-prote 61.1 18 0.00063 35.3 7.5 58 2-62 217-280 (555)
237 2ktr_A Sequestosome-1; autopha 58.5 14 0.00049 29.1 5.0 54 22-77 57-116 (117)
238 3e7l_A Transcriptional regulat 58.2 13 0.00044 25.4 4.2 42 151-202 4-45 (63)
239 2dam_A ETEA protein; KIAA0887, 56.8 26 0.0009 24.6 5.7 43 157-200 16-58 (67)
240 2lnm_A Protein TIC 40, chlorop 56.6 6.3 0.00021 27.3 2.3 29 265-293 14-42 (62)
241 2ylm_A Ubiquitin carboxyl-term 55.7 45 0.0015 32.7 9.2 69 2-73 340-418 (530)
242 2kmc_A Fermitin family homolog 54.8 70 0.0024 24.5 10.2 74 2-76 20-99 (102)
243 3w1s_C Ubiquitin-like protein 54.1 66 0.0022 24.0 7.9 59 14-77 25-86 (91)
244 2dhz_A RAP guanine nucleotide 53.6 44 0.0015 26.4 7.0 68 5-75 13-91 (120)
245 2zjd_A Microtubule-associated 52.5 59 0.002 25.9 7.8 58 16-76 57-119 (130)
246 1eo6_A GATE-16, golgi-associat 52.1 80 0.0027 24.5 8.4 58 17-77 50-111 (117)
247 2bt6_A Adrenodoxin 1; rutheniu 51.2 14 0.00047 28.0 3.7 28 1-28 6-33 (108)
248 4gdk_A Ubiquitin-like protein 50.1 48 0.0016 24.7 6.5 61 14-77 22-86 (91)
249 4a6q_A Histone deacetylase com 49.9 1E+02 0.0035 25.1 8.8 64 13-78 55-140 (143)
250 2dzl_A Protein FAM100B; UBA-li 49.6 36 0.0012 23.9 5.4 36 161-199 19-55 (66)
251 1q1o_A Cell division control p 49.2 23 0.00078 27.1 4.6 35 2-36 6-47 (98)
252 1f2r_I Inhibitor of caspase-ac 49.1 28 0.00094 26.7 5.0 50 22-77 37-90 (100)
253 3pvl_A Myosin VIIA isoform 1; 48.9 40 0.0014 34.0 7.7 46 2-49 264-309 (655)
254 3rui_B Autophagy-related prote 48.6 81 0.0028 24.6 7.9 59 16-77 51-113 (118)
255 2kna_A Baculoviral IAP repeat- 48.6 20 0.00069 27.5 4.3 36 162-200 30-72 (104)
256 2ekf_A Ancient ubiquitous prot 48.3 40 0.0014 23.5 5.3 40 157-200 11-52 (61)
257 3h9d_A ATG8, microtubule-assoc 47.3 79 0.0027 24.8 7.7 59 16-77 52-114 (119)
258 3u52_E Phenol hydroxylase comp 47.0 72 0.0025 25.1 7.2 61 14-74 40-107 (119)
259 2r2q_A Gamma-aminobutyric acid 46.4 66 0.0022 24.7 7.0 58 16-76 48-109 (110)
260 1wz3_A Autophagy 12B, ATG12B, 46.3 54 0.0018 24.7 6.3 58 15-77 31-91 (96)
261 2ylm_A Ubiquitin carboxyl-term 45.5 42 0.0014 32.9 7.0 72 2-76 131-217 (530)
262 2y5c_A Adrenodoxin-like protei 45.4 19 0.00066 27.2 3.7 28 1-28 5-32 (109)
263 2ejs_A Autocrine motility fact 44.2 50 0.0017 22.7 5.3 40 157-200 11-52 (58)
264 3hui_A Ferredoxin; cytochrome 43.8 20 0.00068 28.3 3.7 29 1-29 21-49 (126)
265 3hrd_D Nicotinate dehydrogenas 42.4 23 0.0008 29.3 4.0 27 2-29 4-30 (160)
266 1v8c_A MOAD related protein; r 42.3 69 0.0023 26.5 7.0 56 15-74 17-81 (168)
267 3m95_A Autophagy related prote 40.8 87 0.003 24.8 7.0 59 16-77 57-119 (125)
268 1n62_A Carbon monoxide dehydro 40.7 27 0.00091 29.1 4.1 28 2-30 4-31 (166)
269 2llw_A Heat shock protein STI1 40.6 13 0.00044 26.7 1.8 29 265-293 22-50 (71)
270 4gmv_A RAS-associated and plec 40.5 1E+02 0.0035 27.7 8.3 70 3-74 33-112 (281)
271 1ffv_A CUTS, iron-sulfur prote 40.5 26 0.00088 29.1 4.0 28 2-30 4-31 (163)
272 1vdl_A Ubiquitin carboxyl-term 40.1 73 0.0025 23.1 5.7 41 159-200 24-64 (80)
273 2ztd_A Holliday junction ATP-d 39.6 16 0.00056 31.7 2.7 25 159-186 164-188 (212)
274 3e21_A HFAF1, FAS-associated f 39.3 42 0.0014 21.8 4.1 35 158-195 4-40 (45)
275 3k6g_A Telomeric repeat-bindin 38.0 46 0.0016 25.7 4.7 38 161-201 15-53 (111)
276 1cuk_A RUVA protein; DNA repai 37.9 18 0.00061 31.1 2.7 25 159-186 160-184 (203)
277 1g2h_A Transcriptional regulat 37.4 14 0.00047 25.1 1.6 26 174-202 21-46 (61)
278 1zoq_C CREB-binding protein, i 36.9 13 0.00044 24.4 1.2 24 272-295 17-40 (47)
279 3cz6_A DNA-binding protein RAP 36.5 34 0.0012 28.6 4.0 45 157-204 61-112 (168)
280 1oai_A Nuclear RNA export fact 35.7 98 0.0033 21.1 5.7 44 158-204 6-55 (59)
281 1umq_A Photosynthetic apparatu 35.4 21 0.0007 26.1 2.3 27 174-202 41-67 (81)
282 3lxf_A Ferredoxin; iron, iron- 35.1 41 0.0014 25.2 4.1 28 3-30 2-29 (104)
283 3hk0_A Growth factor receptor- 34.7 77 0.0026 28.1 6.4 58 4-63 11-74 (256)
284 2qho_B E3 ubiquitin-protein li 34.3 1E+02 0.0035 20.5 5.2 38 160-200 10-49 (53)
285 3kvh_A Protein syndesmos; NUDT 34.1 36 0.0012 29.6 3.9 44 151-198 159-203 (214)
286 1t3q_A Quinoline 2-oxidoreduct 33.4 38 0.0013 27.9 3.9 28 2-30 10-37 (168)
287 2nvu_B Maltose binding protein 33.0 59 0.002 33.2 6.1 61 13-74 713-789 (805)
288 2wlb_A ETP1-FD, electron trans 32.8 62 0.0021 23.9 4.8 30 1-30 3-32 (103)
289 2cu1_A Mitogen-activated prote 32.6 1.1E+02 0.0039 23.3 6.1 44 4-53 9-53 (103)
290 3r8s_T 50S ribosomal protein L 32.3 1E+02 0.0035 23.1 5.8 41 11-54 27-68 (93)
291 1jq4_A Methane monooxygenase c 32.3 39 0.0013 24.8 3.5 30 1-30 4-33 (98)
292 4fp9_B Mterf domain-containing 31.4 31 0.0011 31.9 3.4 44 157-203 44-92 (335)
293 2llv_A Heat shock protein STI1 31.4 16 0.00056 25.9 1.1 26 268-293 28-54 (71)
294 1frr_A Ferredoxin I; electron 27.8 69 0.0024 23.1 4.2 29 1-30 1-29 (95)
295 3m8j_A FOCB protein; all-alpha 27.6 59 0.002 25.4 3.8 41 151-203 23-63 (111)
296 1ltr_D ETB-R2, heat-labIle ent 27.3 34 0.0012 25.8 2.3 30 6-35 40-69 (113)
297 1ibx_B Chimera of IGG binding 26.6 42 0.0014 27.4 2.9 49 22-76 82-134 (145)
298 2v1y_A Phosphatidylinositol-4, 26.4 1.1E+02 0.0039 23.5 5.3 69 4-75 22-103 (108)
299 2kkc_A Sequestosome-1; P62, PB 26.1 99 0.0034 23.6 4.9 54 22-77 42-101 (102)
300 2lgx_A Fermitin family homolog 25.8 51 0.0017 25.7 3.1 72 2-75 27-101 (112)
301 3tca_A Amyloid beta A4 precurs 25.8 1.5E+02 0.0052 25.5 6.8 57 3-62 36-99 (291)
302 1rm6_C 4-hydroxybenzoyl-COA re 25.5 53 0.0018 26.9 3.5 28 3-31 4-31 (161)
303 4eku_A Protein-tyrosine kinase 25.3 76 0.0026 29.8 4.9 55 9-63 35-97 (392)
304 1eto_A FIS, factor for inversi 25.1 38 0.0013 25.5 2.3 27 174-202 58-84 (98)
305 2jrh_A Mitogen-activated prote 25.0 2.1E+02 0.0071 21.4 6.2 45 3-54 6-50 (94)
306 3tve_T 50S ribosomal protein L 24.5 1.4E+02 0.0049 22.2 5.4 40 11-53 21-61 (92)
307 1pqs_A Cell division control p 24.2 55 0.0019 23.7 2.9 36 13-51 3-43 (77)
308 3ah7_A [2Fe-2S]ferredoxin; [2F 23.9 49 0.0017 24.9 2.8 29 1-29 1-32 (113)
309 1ixr_A Holliday junction DNA h 23.7 17 0.00057 31.0 0.0 26 159-187 146-171 (191)
310 2jx5_A GLUB(S27A); ubiquitin, 23.2 1.8E+02 0.0062 19.8 6.2 52 2-61 1-52 (69)
311 2yrv_A AT-rich interactive dom 23.1 40 0.0014 26.5 2.1 26 179-207 78-104 (117)
312 3kh0_A Ralgds, ralgef, RAL gua 23.1 3E+02 0.01 22.2 9.2 78 2-79 28-110 (140)
313 1vlb_A Aldehyde oxidoreductase 22.5 88 0.003 32.8 5.2 53 1-54 1-57 (907)
314 2al6_A Focal adhesion kinase 1 22.4 1.1E+02 0.0037 28.2 5.4 55 6-63 12-77 (375)
315 1ntc_A Protein (nitrogen regul 22.1 30 0.001 25.3 1.1 27 174-202 51-77 (91)
316 1b44_D ETB-POL, protein (B-POL 21.7 41 0.0014 25.9 1.8 30 6-35 40-69 (129)
317 4ajy_C Transcription elongatio 21.7 55 0.0019 24.1 2.6 33 1-33 1-33 (97)
318 1i7h_A Ferredoxin; 2Fe-2S,elec 21.3 56 0.0019 24.6 2.6 29 1-29 1-32 (111)
319 1rax_A Protein (RA-domain of R 21.2 3E+02 0.01 21.5 6.9 78 2-79 31-113 (115)
320 3kxe_C Antitoxin protein PARD- 21.1 80 0.0027 23.3 3.4 43 154-199 9-53 (88)
321 2hjj_A Hypothetical protein YK 20.7 55 0.0019 24.3 2.3 20 170-190 8-27 (87)
322 2lva_A Ubiquitin carboxyl-term 25.6 22 0.00074 28.4 0.0 37 161-200 20-58 (129)
323 3chb_D Cholera toxin; toxin/re 20.1 1.3E+02 0.0043 22.3 4.1 31 5-35 40-70 (104)
324 1wri_A Ferredoxin II, ferredox 20.1 1.2E+02 0.004 21.9 4.1 30 1-31 1-30 (93)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=7.2e-53 Score=403.66 Aligned_cols=255 Identities=36% Similarity=0.618 Sum_probs=168.6
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
+|+|+||+++|++|.|+|++++||.+||++|+.+.++..+++++|||||+||+|+|+++|++|+|+++++|++|++|.+.
T Consensus 7 ~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 7 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred eEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCC
Confidence 58999999999999999999999999999999943211199999999999999999999999999999999777777664
Q ss_pred CCCCCCCCC-CCCCCC--CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCC--CCCCCCCCCCCCCCCCCCccccccccc
Q 022228 81 PTGEGSTRS-TAPTKA--PQSSAPTPAATPATAPQTAVPI--STEPTPAPT--PAPASASVSSVSATSESGVYGHAASNL 153 (300)
Q Consensus 81 ~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~p~~~~p~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~l 153 (300)
.......++ .+.+.+ ..+.++.+...+ ++... +. ...+...+. .+|..++.. .........++.+.|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~s~l 162 (368)
T 1oqy_A 87 GQGTSAPPEASPTAAPESSTSFPPAPTSGM--SHPPP-AAREDKSPSEESAPTTSPESVSGS-VPSSGSSGREEDAASTL 162 (368)
T ss_dssp SSCCCCCSSCCCCCSSSCCCSCCCSSSCCC--CCCCS-SSSCCCCCSCSCCCCSSTTCSCCC-SCSCCCSCCCCCCCTTT
T ss_pred CCCCCCCcccCCCCCccccCCCCCCCCCCC--CCCCc-cccccCCccccCCCCCCCCccccc-ccccccccccccccccc
Confidence 433111111 111100 000000000000 00000 00 000000000 011100000 01111123356678999
Q ss_pred ccCCChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCCccccCcccCCCCCCCCCCCCCCCCCCCCCC
Q 022228 154 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA 233 (300)
Q Consensus 154 ~~g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (300)
|+|+++|++|++||+|| |+|++|++|||++|||+|||||||++|||++.+.... ... ... . .
T Consensus 163 ~~g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~--------~~~---~~~---~-~ 224 (368)
T 1oqy_A 163 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG--------SVQ---ESQ---V-S 224 (368)
T ss_dssp CCTTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCC--------CCC---CCC---S-S
T ss_pred cCCcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccC--------Ccc---ccc---c-c
Confidence 99999999999999999 9999999999999999999999999999987442210 000 000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhCcHHHHHHHHHHHhCCCchHHHHhccC
Q 022228 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLFPCFKSWGN 296 (300)
Q Consensus 234 ~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~L~~~lq~~~ 296 (300)
. . . ..++ .+.++|+|||++|||++||++||+||+||++|||+-.
T Consensus 225 --~--~-------------~-~~~~-~~~~~l~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~ 268 (368)
T 1oqy_A 225 --E--Q-------------P-ATEA-AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLG 268 (368)
T ss_dssp --C--C-------------C-CSSC-CSCCTTHHHHHSHHHHHHHHSTTTCTTHHHHHHTTTT
T ss_pred --c--c-------------c-Cccc-cccchHHHHhcChHHHHHHHHHHhChHHHHHHHHHHH
Confidence 0 0 0 0011 2567899999999999999999999999999999743
No 2
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.8e-21 Score=153.47 Aligned_cols=78 Identities=28% Similarity=0.495 Sum_probs=70.9
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
||+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||+|+||+|+|+++|++|||++|++|+|++++++.
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~ 77 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKS 77 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC---
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCC
Confidence 899999999999999999999999999999999999 99999999999999999999999999999999999997664
Q ss_pred C
Q 022228 81 P 81 (300)
Q Consensus 81 ~ 81 (300)
.
T Consensus 78 ~ 78 (106)
T 3m62_B 78 T 78 (106)
T ss_dssp -
T ss_pred C
Confidence 4
No 3
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.80 E-value=1.3e-19 Score=139.49 Aligned_cols=76 Identities=29% Similarity=0.427 Sum_probs=71.8
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
+|+|+||+++|++|.|+|++++||.+||++|+.+.+ +++++|||+|+||.|+|+++|++|+| +|++|||+++.+..
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 499999999999999999999999999999999999 99999999999999999999999999 89999999986543
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=1.4e-19 Score=140.85 Aligned_cols=72 Identities=26% Similarity=0.348 Sum_probs=70.1
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
||+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+||+|+|+.+|++|+|++|++|++..
T Consensus 21 mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 21 MIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 799999999999999999999999999999999999 999999999999999999999999999999999863
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=133.62 Aligned_cols=75 Identities=28% Similarity=0.342 Sum_probs=72.5
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
.|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+++|++|+|++|++|+++++.+
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 399999999999999999999999999999999999 999999999999999999999999999999999999865
No 6
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=6.1e-20 Score=141.75 Aligned_cols=75 Identities=28% Similarity=0.517 Sum_probs=70.5
Q ss_pred CEEEEEEcCCCcEEEEEeC--CCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCchhhccc-CCCcEEEEEEe
Q 022228 1 MMKIFVKTLKGTSFDVEVK--PEDTVFDVKMKI-ETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV-AENSFVVIMLT 76 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~--~~~TV~~LK~kI-~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI-~~g~~I~v~v~ 76 (300)
||+|+||+++|++|.|+|+ +++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| .+|++|+|+++
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence 8999999999999988755 999999999999 99989 99999999999999999999999999 69999999987
Q ss_pred cC
Q 022228 77 KN 78 (300)
Q Consensus 77 k~ 78 (300)
+.
T Consensus 78 ~~ 79 (87)
T 2lxa_A 78 PN 79 (87)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 7
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.79 E-value=4.3e-19 Score=134.74 Aligned_cols=76 Identities=41% Similarity=0.711 Sum_probs=70.7
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETV---QGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~---~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
+|+|+||+++|+.|.++|++++||.+||++|+.+ .| +++++|||+|+|+.|+|+++|++|+|++|++|+|++++
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 5999999999999999999999999999999998 67 99999999999999999999999999999999999987
Q ss_pred CC
Q 022228 78 NK 79 (300)
Q Consensus 78 ~~ 79 (300)
++
T Consensus 82 ~~ 83 (85)
T 2wyq_A 82 TK 83 (85)
T ss_dssp --
T ss_pred CC
Confidence 65
No 8
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=6.3e-19 Score=137.56 Aligned_cols=77 Identities=47% Similarity=0.765 Sum_probs=72.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETV---QGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~---~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|+|+||+++|+.|.++|++++||.+||++|+.. .| +++++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 799999999999999999999999999999999 67 999999999999999999999999999999999999876
Q ss_pred CCC
Q 022228 79 KRP 81 (300)
Q Consensus 79 ~~~ 81 (300)
+..
T Consensus 78 ~~~ 80 (95)
T 1uel_A 78 KAV 80 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.79 E-value=3.4e-19 Score=137.23 Aligned_cols=78 Identities=33% Similarity=0.541 Sum_probs=72.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~~ 81 (300)
|+|+||+++|++|.|+|++++||.+||++|+.+.+ +|+++|||+|+|+.|+|+++|++|+|++|++|+|+++.+...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999999987655
Q ss_pred C
Q 022228 82 T 82 (300)
Q Consensus 82 ~ 82 (300)
.
T Consensus 78 ~ 78 (88)
T 4fbj_B 78 G 78 (88)
T ss_dssp -
T ss_pred C
Confidence 3
No 10
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=8.1e-19 Score=139.61 Aligned_cols=77 Identities=29% Similarity=0.377 Sum_probs=72.0
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
+|+|+||+++|+ |.|+|++++||.+||++|+.+.+ +++++|||+|+||+|+|+++|++|+|+++++|||+++++..
T Consensus 17 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 17 LIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp EEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred eEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 599999999886 79999999999999999999999 99999999999999999999999999999999999987654
Q ss_pred C
Q 022228 81 P 81 (300)
Q Consensus 81 ~ 81 (300)
.
T Consensus 93 ~ 93 (106)
T 1wx7_A 93 A 93 (106)
T ss_dssp S
T ss_pred C
Confidence 3
No 11
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.78 E-value=6.7e-19 Score=136.07 Aligned_cols=75 Identities=41% Similarity=0.647 Sum_probs=72.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
.|+|+||+++|++|.|+|++++||.+||++|+++.| +++++|||+|+|+.|+|+++|++|||++|++|+|+++.+
T Consensus 17 ~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 17 SMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp SEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 499999999999999999999999999999999999 999999999999999999999999999999999998864
No 12
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=6.1e-19 Score=134.98 Aligned_cols=72 Identities=39% Similarity=0.592 Sum_probs=70.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee-cCCCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKV-LKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~Gki-L~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
|+|+||++.|++|.++|++++||.+||++|+.+.| +|+++|||+|+||. |+|+++|++|+|++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 99999999999999999999999999999999999 99999999999999 99999999999999999999875
No 13
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=2.8e-19 Score=141.27 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=69.8
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
||+|+||++.|+++.|+|++++||.+||++|+++.| +++++|||||.||+|+|+.+|++|+|+++++|+|+.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 699999999999999999999999999999999999 999999999999999999999999999999999864
No 14
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.78 E-value=5.6e-19 Score=139.29 Aligned_cols=74 Identities=26% Similarity=0.508 Sum_probs=69.4
Q ss_pred EEEEEEcCCCcEEEE--EeCCCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCchhhccc-CCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDV--EVKPEDTVFDVKMKI-ETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV-AENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~i--eV~~~~TV~~LK~kI-~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI-~~g~~I~v~v~k 77 (300)
|+|+||+++|++|.+ +|++++||.+||++| +...| +++++|||||+||+|+|+.+|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 899999999998777 566999999999999 87878 99999999999999999999999999 999999999987
Q ss_pred C
Q 022228 78 N 78 (300)
Q Consensus 78 ~ 78 (300)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 5
No 15
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.77 E-value=2e-18 Score=134.18 Aligned_cols=77 Identities=40% Similarity=0.632 Sum_probs=73.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~~ 81 (300)
|+|+||+++|++|.|+|++++||.+||++|++..+ +++++|||+|+|+.|+|+++|++|+|+++++|+|+++.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999977644
No 16
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.76 E-value=1.8e-18 Score=131.96 Aligned_cols=76 Identities=34% Similarity=0.562 Sum_probs=72.8
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
.|+|+||+++|++|.|+|++++||.+||++|+.+.+ +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 12 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred cEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 499999999999999999999999999999999999 9999999999999999999999999999999999988653
No 17
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.9e-18 Score=135.62 Aligned_cols=76 Identities=39% Similarity=0.600 Sum_probs=73.0
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
+|+|+||+++|++|.|+|++++||.+||++|+++.+ +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 489999999999999999999999999999999999 9999999999999999999999999999999999998753
No 18
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=5e-18 Score=130.15 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=72.9
Q ss_pred CEEEEEEcCCC-cEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 1 MMKIFVKTLKG-TSFDV-EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 1 mM~I~VKtl~g-~~~~i-eV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
+|+|+||+++| ++|.| +|++++||.+||++|+.+.+ +++++|||+|+|+.|+|+++|++|+|+++++|+|+++.+
T Consensus 7 ~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp CEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 59999999999 79999 59999999999999999999 999999999999999999999999999999999999876
Q ss_pred CC
Q 022228 79 KR 80 (300)
Q Consensus 79 ~~ 80 (300)
..
T Consensus 84 gG 85 (89)
T 1wy8_A 84 SG 85 (89)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 19
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=128.59 Aligned_cols=74 Identities=26% Similarity=0.418 Sum_probs=71.4
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
+|+|+||+++|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 7 ~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 7 GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 499999999999999999999999999999999999 99999999999999999999999999999999999875
No 20
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4.1e-18 Score=128.86 Aligned_cols=77 Identities=40% Similarity=0.624 Sum_probs=73.8
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
+|+|+||+++|+++.|+|++++||.+||++|+++.+ +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 599999999999999999999999999999999999 99999999999999999999999999999999999987653
No 21
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.3e-18 Score=137.18 Aligned_cols=78 Identities=21% Similarity=0.422 Sum_probs=74.0
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
+|+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||+|+||.|+|+++|++|+|++|++|||+++++..
T Consensus 23 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 23 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 499999999999999999999999999999999999 99999999999999999999999999999999999987654
Q ss_pred C
Q 022228 81 P 81 (300)
Q Consensus 81 ~ 81 (300)
.
T Consensus 100 ~ 100 (106)
T 1ttn_A 100 N 100 (106)
T ss_dssp C
T ss_pred C
Confidence 3
No 22
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=3.4e-18 Score=127.83 Aligned_cols=74 Identities=26% Similarity=0.363 Sum_probs=70.8
Q ss_pred CEEEEEEcCCCcEE-EEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 1 MMKIFVKTLKGTSF-DVE-VKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 1 mM~I~VKtl~g~~~-~ie-V~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
.|+|+||+++|+++ .++ |++++||.+||++|+.+.| +++++|||+|+|+.|+|+++|++|+|++|++|+++++.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 49999999999985 999 9999999999999999999 99999999999999999999999999999999999875
No 23
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.76 E-value=4.2e-18 Score=125.86 Aligned_cols=74 Identities=35% Similarity=0.592 Sum_probs=71.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|+|+||+++|+++.++|++++||.+||++|++..+ +++++|||+|+|+.|+|+.+|++|+|++|++|+++++.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998865
No 24
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.2e-18 Score=130.47 Aligned_cols=77 Identities=39% Similarity=0.588 Sum_probs=72.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
+|+|+||+++|+++.|+|++++||.+||++|+++.+ +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 589999999999999999999999999999999999 99999999999999999999999999999999999987653
No 25
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=131.19 Aligned_cols=72 Identities=31% Similarity=0.453 Sum_probs=69.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
+|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+.+|++|+| +|++||+++|
T Consensus 17 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 17 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 389999999999999999999999999999999999 99999999999999999999999999 8999999875
No 26
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=5.3e-18 Score=129.37 Aligned_cols=76 Identities=29% Similarity=0.480 Sum_probs=73.2
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
+|+|+||+++|+++.++|++++||.+||++|+++.+ +++++|||+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred CEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 599999999999999999999999999999999999 9999999999999999999999999999999999998765
No 27
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.75 E-value=3.9e-18 Score=127.94 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=72.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|+|+||+++|+++.++|++++||.+||++|+++.| +++++|||+|+|+.|+|+++|++|+|+++++|+++++.+.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=132.10 Aligned_cols=75 Identities=28% Similarity=0.348 Sum_probs=70.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|+|+||+++|+++.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|++|++|+|+++.+.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 99999999999999999999999999999999999 9999999999999999999999999999999999998754
No 29
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=5.9e-18 Score=131.74 Aligned_cols=75 Identities=29% Similarity=0.313 Sum_probs=69.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhcccCCCcEEEEEEecCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD-TTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~-~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
+|+|+||+++|+.|.|+|++++||.+||++|+.+. +++|||||+||.|+|+ ++|++|+|++|++|||++++++
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 7 GINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ------ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST------TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC------cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 49999999999999999999999999999998773 7899999999999999 9999999999999999998765
Q ss_pred CC
Q 022228 80 RP 81 (300)
Q Consensus 80 ~~ 81 (300)
.+
T Consensus 81 ~~ 82 (95)
T 1wia_A 81 AA 82 (95)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 30
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.75 E-value=7.3e-18 Score=124.55 Aligned_cols=75 Identities=41% Similarity=0.652 Sum_probs=71.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|+|+||+.+|+++.++|++++||.+||++|++..+ +++++|+|+|+|+.|+|+.+|++|+|++|++|+++++.+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999988653
No 31
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=5.9e-18 Score=131.35 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=71.3
Q ss_pred CEEEEEEcCCCc--EEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCCCeEEEeCCeecCCCCchhhc--ccCCCcEEEEE
Q 022228 1 MMKIFVKTLKGT--SFDVEVKPEDTVFDVKMKIETVQ--GSDVYPAAQQMLIYQGKVLKDDTTLEEN--KVAENSFVVIM 74 (300)
Q Consensus 1 mM~I~VKtl~g~--~~~ieV~~~~TV~~LK~kI~~~~--g~~~ip~~~qkLi~~GkiL~D~~tL~d~--gI~~g~~I~v~ 74 (300)
+|+|+||+.+++ .+.|+|++++||.+||++|+.+. + +++++|||||+||+|+|+++|++| +|+++++|||+
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 489999999998 67788889999999999999998 8 999999999999999999999999 99999999999
Q ss_pred EecCCC
Q 022228 75 LTKNKR 80 (300)
Q Consensus 75 v~k~~~ 80 (300)
++.+..
T Consensus 84 ~~~~gg 89 (93)
T 1wgd_A 84 CNVKSG 89 (93)
T ss_dssp CCCCCC
T ss_pred eCCCCC
Confidence 887654
No 32
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=3.3e-18 Score=136.43 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=71.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---------------CCeEEEeCCeecC-CCCchhhcc
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA---------------AQQMLIYQGKVLK-DDTTLEENK 64 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~---------------~~qkLi~~GkiL~-D~~tL~d~g 64 (300)
.|+|+||+++|++|.|+|++++||.+||++|+++.+ +++ ++|+|||+||+|. |+++|++||
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 499999999999999999999999999999999998 665 4679999999996 568999999
Q ss_pred cCCCcEEEEEEecCCCC
Q 022228 65 VAENSFVVIMLTKNKRP 81 (300)
Q Consensus 65 I~~g~~I~v~v~k~~~~ 81 (300)
|++|++|||+.+.+...
T Consensus 84 I~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CCSSEEEEEEECSCSCC
T ss_pred CCCCCEEEEEehhccCC
Confidence 99999999999987653
No 33
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=8.8e-18 Score=132.85 Aligned_cols=77 Identities=23% Similarity=0.416 Sum_probs=70.8
Q ss_pred CEEEEEEcCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhcccCCCcEEEEEE
Q 022228 1 MMKIFVKTLKG----TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD-TTLEENKVAENSFVVIML 75 (300)
Q Consensus 1 mM~I~VKtl~g----~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~-~tL~d~gI~~g~~I~v~v 75 (300)
+|+|+||+..+ ++|.|+|++++||.+||++|+.+++ +++++|||+|+||.|+|+ ++|++|+|+++++|+|+.
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 59999998754 7999999999999999999999999 999999999999999988 699999999999999998
Q ss_pred ecCCC
Q 022228 76 TKNKR 80 (300)
Q Consensus 76 ~k~~~ 80 (300)
+.+..
T Consensus 84 ~~~gg 88 (102)
T 1v5o_A 84 KDNVG 88 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 34
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.74 E-value=5.8e-18 Score=132.73 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=72.9
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
+|+|+||+++|+++.|+|++++||.+||++|+.+.| +++++|||+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 21 ~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 389999999999999999999999999999999999 9999999999999999999999999999999999998653
No 35
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=8.9e-18 Score=129.22 Aligned_cols=75 Identities=37% Similarity=0.661 Sum_probs=69.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|+|+||+++|+++.++|++++||.+||++|++..+ +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988754
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=1.7e-17 Score=129.50 Aligned_cols=76 Identities=34% Similarity=0.437 Sum_probs=71.9
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhcccCCCcEEEEEEecCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD-TTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~-~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
.|+|+||+++| ++.|+|++++||.+||++|+.+.| +|+++|||+|+||+|+|+ ++|++|+|+++++|+|+++.+.
T Consensus 15 ~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 15 KIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp CEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred CEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 38999999888 899999999999999999999999 999999999999999999 9999999999999999998765
Q ss_pred C
Q 022228 80 R 80 (300)
Q Consensus 80 ~ 80 (300)
.
T Consensus 91 g 91 (94)
T 2kan_A 91 R 91 (94)
T ss_dssp S
T ss_pred C
Confidence 4
No 37
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=9.8e-18 Score=132.42 Aligned_cols=72 Identities=22% Similarity=0.135 Sum_probs=65.2
Q ss_pred EEEEEEcCC----CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLK----GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~----g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
..|.|+..+ +++|.|+|++++||.+||++|+++.| +|+++|||||+||+|+|+++|++|+|++|++|+||+.
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~l 91 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLEL 91 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 456677666 77999999999999999999999999 9999999999999999999999999999999955543
No 38
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=5.7e-18 Score=131.98 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=72.1
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
+|+|+||+. |++|.|+|++++||.+||++|+.+.+ +++++|||+|+||.|+|+++|++|+|+++++|||+++.+..
T Consensus 17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 489999998 99999999999999999999999999 99999999999999999999999999999999999887653
No 39
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.73 E-value=1.8e-17 Score=133.11 Aligned_cols=76 Identities=41% Similarity=0.644 Sum_probs=73.1
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
+|+|+||+++|++|.|+|++++||.+||++|+.+.+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 499999999999999999999999999999999999 9999999999999999999999999999999999998753
No 40
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.73 E-value=2.4e-17 Score=122.52 Aligned_cols=71 Identities=37% Similarity=0.624 Sum_probs=68.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
|+|+||+ +|+.+.++|++++||.+||++|+...| +++++|||+|+|+.|+|+++|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 8999998 999999999999999999999999999 9999999999999999999999999999999999865
No 41
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.4e-17 Score=131.48 Aligned_cols=76 Identities=29% Similarity=0.381 Sum_probs=71.4
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
+|+|+||+++|+ |.|+|++++||.+||++|+++.+ +++++|||+|+||.|+|+++|++|+|++|++|+|+++.+..
T Consensus 22 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 22 LIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred eEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 499999999886 79999999999999999999999 99999999999999999999999999999999999987653
No 42
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.73 E-value=2.7e-18 Score=118.70 Aligned_cols=49 Identities=55% Similarity=0.981 Sum_probs=47.1
Q ss_pred ccccCCChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 022228 152 NLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203 (300)
Q Consensus 152 ~l~~g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP~ 203 (300)
+|++|+.+++.|++|++|| |+|++|++|||+++||+|||+|||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4788999999999999999 999999999999999999999999999995
No 43
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.1e-17 Score=135.62 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=70.0
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
+|+|+||++ |++|.|+|++++||.+||++|+.+.+ +++++|||+|+||+|+|+++|++|+|++|++|+|+++++..
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 499999998 99999999999999999999999999 99999999999999999999999999999999999987654
Q ss_pred C
Q 022228 81 P 81 (300)
Q Consensus 81 ~ 81 (300)
.
T Consensus 108 ~ 108 (125)
T 1j8c_A 108 S 108 (125)
T ss_dssp -
T ss_pred C
Confidence 3
No 44
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=129.88 Aligned_cols=75 Identities=27% Similarity=0.366 Sum_probs=71.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
+|+|+||+. |+.+.|+|++++||.+||++|+...| +++++|||+|+||+|+|+++|++|||++|++|+|+++++.
T Consensus 25 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 25 IMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred eEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 489999998 89999999999999999999999999 9999999999999999999999999999999999988654
No 45
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=7.3e-17 Score=130.82 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=66.0
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHH------hCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcE--EE
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETV------QGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSF--VV 72 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~------~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~--I~ 72 (300)
.|+|+||+++|+++.|+|++++||.+||++|+.. .+.. +++++|||||.||+|+|+++|++|+|+.+++ ||
T Consensus 16 ~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p-~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 94 (116)
T 1wgh_A 16 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQV-SSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 94 (116)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCC-CCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCC-CChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 3899999999999999999999999999999994 3411 3699999999999999999999999987754 55
Q ss_pred EEEecC
Q 022228 73 IMLTKN 78 (300)
Q Consensus 73 v~v~k~ 78 (300)
|+++..
T Consensus 95 Lvlr~~ 100 (116)
T 1wgh_A 95 LVARET 100 (116)
T ss_dssp EEECSS
T ss_pred EEccCC
Confidence 555543
No 46
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.71 E-value=3.8e-17 Score=127.85 Aligned_cols=76 Identities=41% Similarity=0.643 Sum_probs=72.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
|+|+||+.+|+++.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|++|++|+|+++.+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987643
No 47
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=127.75 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=69.8
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
+|+|+||+ |+++.|+|++++||.+||++|+++.+ +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 19 ~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 19 SMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp -CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred cEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 48999997 89999999999999999999999999 9999999999999999999999999999999999988653
No 48
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=2.2e-17 Score=129.46 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=68.4
Q ss_pred CEEEEEEcCCCcEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 1 MMKIFVKTLKGTSF-DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 1 mM~I~VKtl~g~~~-~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
||+|+|| +.|++| .|+|++++||.+||++|++++| +++++|||+|+||+|+|+ +|++|+|+++++|+||.+..
T Consensus 7 ~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 7 GYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 5899999 578999 6999999999999999999999 999999999999999999 99999999999999987643
No 49
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.54 E-value=8.5e-19 Score=130.38 Aligned_cols=75 Identities=28% Similarity=0.464 Sum_probs=72.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|+|+||+.+|++|.++|++++||.+||++|+...| +++++|+|+|+|+.|+|+++|++|+|++|++|+++++.+.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 50
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=131.43 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=66.5
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHH------HhCCCCC--CCCCeEEEeCCeecCCCCchhhcccCCCcE--
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIET------VQGSDVY--PAAQQMLIYQGKVLKDDTTLEENKVAENSF-- 70 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~------~~g~~~i--p~~~qkLi~~GkiL~D~~tL~d~gI~~g~~-- 70 (300)
+|+|+||+++|+++.|+|++++||.+||++|+. +.+ + ++++|||||+||+|+|+++|++|+|+++++
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~---ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEE---QVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCC---TTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccC---CCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 499999999999999999999999999999998 455 6 589999999999999999999999998885
Q ss_pred EEEEEecC
Q 022228 71 VVIMLTKN 78 (300)
Q Consensus 71 I~v~v~k~ 78 (300)
|||+++.+
T Consensus 94 lhlv~r~~ 101 (125)
T 2gow_A 94 MHLVARET 101 (125)
T ss_dssp EEEEECSC
T ss_pred EEEEecCC
Confidence 55555544
No 51
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=127.78 Aligned_cols=76 Identities=41% Similarity=0.644 Sum_probs=72.8
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
+|+|+||+++|+.+.++|++++||.+||++|+.+.+ +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 35 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred eEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 499999999999999999999999999999999999 9999999999999999999999999999999999998653
No 52
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.5e-16 Score=123.07 Aligned_cols=74 Identities=28% Similarity=0.430 Sum_probs=68.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCC-----CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-CCchhhcccCCCcEEEEE
Q 022228 1 MMKIFVKTLKGTSFDVEVKPE-----DTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKD-DTTLEENKVAENSFVVIM 74 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~-----~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D-~~tL~d~gI~~g~~I~v~ 74 (300)
||+|+||+ .|+.|.|+|+++ +||.+||++|+..+| +++++|||+|+||.|+| +++|++|+|+++++|+|+
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 69999997 588999999995 999999999999999 99999999999999998 568999999999999998
Q ss_pred EecC
Q 022228 75 LTKN 78 (300)
Q Consensus 75 v~k~ 78 (300)
.++.
T Consensus 83 ~~~~ 86 (92)
T 1wxv_A 83 GKKN 86 (92)
T ss_dssp SCCS
T ss_pred ecCC
Confidence 7654
No 53
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.69 E-value=1.2e-16 Score=137.43 Aligned_cols=77 Identities=39% Similarity=0.591 Sum_probs=73.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~~ 81 (300)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+++|++|+|++|++|||+++.+...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999999977543
No 54
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1.1e-16 Score=127.73 Aligned_cols=74 Identities=23% Similarity=0.198 Sum_probs=68.6
Q ss_pred EEEEEEcCCC---cEEEEEeC--------C-CCCHHHHHHHHHHHh--CCCCCCCCC-eEEEeCCeecCCCCchhhcccC
Q 022228 2 MKIFVKTLKG---TSFDVEVK--------P-EDTVFDVKMKIETVQ--GSDVYPAAQ-QMLIYQGKVLKDDTTLEENKVA 66 (300)
Q Consensus 2 M~I~VKtl~g---~~~~ieV~--------~-~~TV~~LK~kI~~~~--g~~~ip~~~-qkLi~~GkiL~D~~tL~d~gI~ 66 (300)
|+|+||+.++ ++|.|+|+ + ++||.+||++|+.+. + +++++ |||||+||.|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 89999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCcEEEEEEecC
Q 022228 67 ENSFVVIMLTKN 78 (300)
Q Consensus 67 ~g~~I~v~v~k~ 78 (300)
++++|||+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998764
No 55
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.67 E-value=1.9e-16 Score=129.95 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=67.7
Q ss_pred EEEEEEcCCCcEE-EEEeCCCCCHHHHHHHHHHHhC--CCCCCC--CCeEEEeCCeecCCCCchhhcccCCC------cE
Q 022228 2 MKIFVKTLKGTSF-DVEVKPEDTVFDVKMKIETVQG--SDVYPA--AQQMLIYQGKVLKDDTTLEENKVAEN------SF 70 (300)
Q Consensus 2 M~I~VKtl~g~~~-~ieV~~~~TV~~LK~kI~~~~g--~~~ip~--~~qkLi~~GkiL~D~~tL~d~gI~~g------~~ 70 (300)
|+|+||+++|+.| .+++++++||.+||++|+...+ ++.+|+ ++|||||+||+|+|+++|++|+|.++ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 8999999999998 6999999999999999965432 112775 89999999999999999999999998 56
Q ss_pred EEEEEecCCC
Q 022228 71 VVIMLTKNKR 80 (300)
Q Consensus 71 I~v~v~k~~~ 80 (300)
|||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8888876643
No 56
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.67 E-value=2.4e-16 Score=133.24 Aligned_cols=76 Identities=28% Similarity=0.339 Sum_probs=72.4
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+++|++|+|++|++||++++.+..
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987653
No 57
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.67 E-value=1.6e-16 Score=122.79 Aligned_cols=73 Identities=30% Similarity=0.453 Sum_probs=69.0
Q ss_pred CEEEEEEcCCCcEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 1 MMKIFVKTLKGTSFDV-EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI---YQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 1 mM~I~VKtl~g~~~~i-eV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi---~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
+|+|+||. .|++|.| +|++++||.+||++|++++| +|+++|||+ |+||+|+|+.+|++|+|++|++|+||.+
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 48999994 8899999 99999999999999999999 999999999 9999999999999999999999999875
Q ss_pred c
Q 022228 77 K 77 (300)
Q Consensus 77 k 77 (300)
.
T Consensus 83 ~ 83 (90)
T 1v5t_A 83 R 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 58
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=126.55 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=64.4
Q ss_pred EEEEEEcCCCc--EEEEEeCCCCCHHHHHHHHHHHh-CCCCCCCCCeEEEeCCeecCCCCchhhc--ccCCCcEEEEE
Q 022228 2 MKIFVKTLKGT--SFDVEVKPEDTVFDVKMKIETVQ-GSDVYPAAQQMLIYQGKVLKDDTTLEEN--KVAENSFVVIM 74 (300)
Q Consensus 2 M~I~VKtl~g~--~~~ieV~~~~TV~~LK~kI~~~~-g~~~ip~~~qkLi~~GkiL~D~~tL~d~--gI~~g~~I~v~ 74 (300)
|+|+||+++|+ ++.|+|++++||.+||++|+.+. |. .++++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 89999999998 67899999999999999999874 51 446999999999999999999999 99999999874
No 59
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=134.42 Aligned_cols=75 Identities=41% Similarity=0.655 Sum_probs=72.5
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
+|+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+
T Consensus 20 ~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 20 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp CEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 599999999999999999999999999999999999 999999999999999999999999999999999998754
No 60
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=1.2e-16 Score=124.79 Aligned_cols=72 Identities=29% Similarity=0.459 Sum_probs=66.9
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
+|+|+|| +.|++|.|+|++++||.+||++|+.+++ +++++|||+|+||.| |+.+|++|+|+++++|+||.++
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 4899999 6799999999999999999999999999 999999999999999 5569999999999999998754
No 61
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.66 E-value=1.2e-16 Score=129.59 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=65.3
Q ss_pred EEEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccC-------CCcEEEE
Q 022228 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVA-------ENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~-------~g~~I~v 73 (300)
|.|+|+...++ ++.|+|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||+ .+++|++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 45555555565 599999999999999999999999 999999999999999999999999999 6999999
Q ss_pred EEe
Q 022228 74 MLT 76 (300)
Q Consensus 74 ~v~ 76 (300)
+++
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 998
No 62
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.6e-16 Score=126.19 Aligned_cols=76 Identities=37% Similarity=0.572 Sum_probs=72.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
++|+||+++|+++.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 58999999999999999999999999999999999 99999999999999999999999999999999999987654
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.66 E-value=2.3e-16 Score=133.28 Aligned_cols=73 Identities=29% Similarity=0.384 Sum_probs=70.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-e-CCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI-Y-QGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi-~-~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
|+|+||+++|++|.++|++++||.+||++|+...| +|+++|||+ | +|+.|+|+++|++|+|++|++|+++++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 89999999999999999999999999999999999 999999999 9 7999999999999999999999999873
No 64
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.66 E-value=1.5e-16 Score=128.82 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=67.8
Q ss_pred EEEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCC-------CcEEEE
Q 022228 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAE-------NSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~-------g~~I~v 73 (300)
|.|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|++||++|||++ +++|++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 56777766666 788999999999999999999999 9999999999999999999999999999 999999
Q ss_pred EEec
Q 022228 74 MLTK 77 (300)
Q Consensus 74 ~v~k 77 (300)
++|.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9986
No 65
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.5e-17 Score=128.29 Aligned_cols=72 Identities=36% Similarity=0.622 Sum_probs=68.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
|+|+||+ .|++|.|+|++++||.+||++|+++.| +++++|||+|+||.|+|+++|++|||++|++|+|+.+.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 6788997 899999999999999999999999999 99999999999999999999999999999999998764
No 66
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.66 E-value=2.5e-16 Score=126.22 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=72.8
Q ss_pred CEEEEEEcC---CCcEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 1 MMKIFVKTL---KGTSFDVEVKP-EDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 1 mM~I~VKtl---~g~~~~ieV~~-~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
.|+|+||+. +|+.+.++|++ ++||.+||++|+...| +|+++|||+|+|++|+|+++|++|+|++|++|+|+++
T Consensus 27 ~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 27 PATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred cEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 389999998 89999999998 9999999999999999 9999999999999999999999999999999999998
Q ss_pred cCCC
Q 022228 77 KNKR 80 (300)
Q Consensus 77 k~~~ 80 (300)
.+..
T Consensus 104 ~~GG 107 (111)
T 1we6_A 104 ERSG 107 (111)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 7654
No 67
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=5.1e-16 Score=118.81 Aligned_cols=70 Identities=27% Similarity=0.460 Sum_probs=65.9
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
+++++++|++|.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|++|++|+|+.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 456678999999999999999999999999999 9999999999999999999999999999999999864
No 68
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.65 E-value=4.1e-16 Score=136.49 Aligned_cols=78 Identities=38% Similarity=0.572 Sum_probs=74.2
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
.|+|+||+++|++|.|+|++++||.+||++|+.+.+ +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 399999999999999999999999999999999999 99999999999999999999999999999999999987654
Q ss_pred C
Q 022228 81 P 81 (300)
Q Consensus 81 ~ 81 (300)
.
T Consensus 182 ~ 182 (189)
T 3q3f_A 182 G 182 (189)
T ss_dssp C
T ss_pred C
Confidence 3
No 69
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.64 E-value=9.5e-16 Score=122.02 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=68.8
Q ss_pred EEEEEEcCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhccc-CCCcEEEEEEec
Q 022228 2 MKIFVKTLKG--TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV-AENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI-~~g~~I~v~v~k 77 (300)
|+|+|++..+ .++.|+|++++||.+||++|++++| +|+++|||+|+|+.|+|+++|.+||| ++|++||+++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 8999999875 6899999999999999999999999 99999999999999999999999999 599999999854
No 70
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=122.43 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=69.2
Q ss_pred EEEEEE-cCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVK-TLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VK-tl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|.|+|+ ...++.|.++++++.||++||++|+.+.+ +|++.|+|||+||+|+|+.||++|||++|.+|||+++...
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 567776 56788999999999999999999999999 9999999999999999999999999999999999998643
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.62 E-value=3.2e-17 Score=134.78 Aligned_cols=76 Identities=39% Similarity=0.606 Sum_probs=0.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
|+|+||+++|++|.|+|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++.+..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 72
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.2e-16 Score=119.82 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=64.4
Q ss_pred CEEEEEEcCCCcEE--EE-EeCCCCCHHHHHHHHHHH-hCCCCCCCCCeEEEeC--CeecCCCCchhhcccCCCcEEEE
Q 022228 1 MMKIFVKTLKGTSF--DV-EVKPEDTVFDVKMKIETV-QGSDVYPAAQQMLIYQ--GKVLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 1 mM~I~VKtl~g~~~--~i-eV~~~~TV~~LK~kI~~~-~g~~~ip~~~qkLi~~--GkiL~D~~tL~d~gI~~g~~I~v 73 (300)
||+|+||+++|+++ .| +|++++||.+||++|++. .+ +++++|||+|. ||+|+|+++|++|+|+++++|+|
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 69999999998775 58 999999999999999995 67 99999999976 99999999999999999999875
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.61 E-value=2.8e-15 Score=124.76 Aligned_cols=73 Identities=42% Similarity=0.677 Sum_probs=70.8
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999864
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.61 E-value=3.5e-15 Score=124.15 Aligned_cols=75 Identities=41% Similarity=0.656 Sum_probs=72.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|+|+||+++|+++.++|++++||.+||++|+.+.| +++++|+|+|+|+.|+|+++|++|+|++|++|+|+++.+.
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998753
No 75
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=129.60 Aligned_cols=75 Identities=41% Similarity=0.656 Sum_probs=69.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|.|+||+++|+++.++|++++||.+||++|+.+.| +|+++|+|+|+|+.|+|+++|.+|+|++|++|||+++.+.
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999988653
No 76
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.60 E-value=4.1e-15 Score=119.93 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=70.1
Q ss_pred EEEEEEcC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEE
Q 022228 2 MKIFVKTL----------KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFV 71 (300)
Q Consensus 2 M~I~VKtl----------~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I 71 (300)
|+|+|+.. +|+++.|+|++++||.+||++|+...| +++++|||+|+|+.|+|+++|++|+|+++++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 56777764 478999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 022228 72 VIMLTKNKR 80 (300)
Q Consensus 72 ~v~v~k~~~ 80 (300)
||+++.+..
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987654
No 77
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.58 E-value=1.9e-16 Score=134.15 Aligned_cols=77 Identities=39% Similarity=0.591 Sum_probs=0.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~~ 81 (300)
|+|+||+++|++|.|+|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++.+...
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 78
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.7e-15 Score=116.68 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=65.8
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~--~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
|.++++.+.|+++.|+|++++||.+||++|++++| +|+++|||+| .|+ |+|+.+|++|+|+.|++||+++..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 66777779999999999999999999999999999 9999999997 566 999999999999999999987653
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.55 E-value=1.4e-14 Score=135.28 Aligned_cols=75 Identities=41% Similarity=0.655 Sum_probs=70.4
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
+|+|+||+++|+++.|+|++++||.+||++|+.+.+ +++++|||+|+||+|+|+++|++|+|+++++|+|++|.+
T Consensus 233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 589999999999999999999999999999999999 999999999999999999999999999999999998753
No 80
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.53 E-value=1.1e-14 Score=111.96 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=65.3
Q ss_pred EEEEEE--cCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-------CCeecCCCCchhhcccCCCcEEE
Q 022228 2 MKIFVK--TLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY-------QGKVLKDDTTLEENKVAENSFVV 72 (300)
Q Consensus 2 M~I~VK--tl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~-------~GkiL~D~~tL~d~gI~~g~~I~ 72 (300)
++|.|. ..+.+.+++.+++++||.+||++|+.++| +|+++||||| .|+.|+|+++|++|+|++|++||
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ih 79 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIH 79 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEE
Confidence 445554 45667889999999999999999999999 9999999997 48999999999999999999999
Q ss_pred EEEecC
Q 022228 73 IMLTKN 78 (300)
Q Consensus 73 v~v~k~ 78 (300)
|+-+.|
T Consensus 80 lvd~~P 85 (86)
T 4b6w_A 80 VVDLQP 85 (86)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 997654
No 81
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.49 E-value=1.1e-13 Score=108.21 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=62.9
Q ss_pred EEEEEEcCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--Ce---ec-CCCCchhhcccCCCcEEEE
Q 022228 2 MKIFVKTLKG--TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ--GK---VL-KDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~--Gk---iL-~D~~tL~d~gI~~g~~I~v 73 (300)
++|+|+...+ +.++++|++++||.+||++|+.++| +|+++|||+|. |+ .| +|+++|++|+|++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 6788887655 4899999999999999999999999 99999999997 55 34 8999999999999999998
Q ss_pred E
Q 022228 74 M 74 (300)
Q Consensus 74 ~ 74 (300)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 82
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.49 E-value=4.9e-14 Score=112.32 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=65.7
Q ss_pred EEEEEEcCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-----------e----cCCCCchhhccc
Q 022228 2 MKIFVKTLKGTSFDVEVK-PEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGK-----------V----LKDDTTLEENKV 65 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~-~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~Gk-----------i----L~D~~tL~d~gI 65 (300)
|+|+||+.+|+. .|+|+ +++||.+||++|+.+++ +++++|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 899999999965 79999 99999999999999999 9999999999988 3 588999999999
Q ss_pred CCCcEEEEEEe
Q 022228 66 AENSFVVIMLT 76 (300)
Q Consensus 66 ~~g~~I~v~v~ 76 (300)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998765
No 83
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.46 E-value=2.1e-13 Score=107.08 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=63.2
Q ss_pred EEEEEEcCC--CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhcccCCCcEEE
Q 022228 2 MKIFVKTLK--GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---KV----LKDDTTLEENKVAENSFVV 72 (300)
Q Consensus 2 M~I~VKtl~--g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G---ki----L~D~~tL~d~gI~~g~~I~ 72 (300)
+.|+|+... ++.++++|++++||.+||++|+.++| +|+++|||+|.| +. ++|+++|++|+|++|++|+
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 567777543 45799999999999999999999999 999999999988 43 5899999999999999999
Q ss_pred EEEe
Q 022228 73 IMLT 76 (300)
Q Consensus 73 v~v~ 76 (300)
|+-.
T Consensus 92 lvd~ 95 (97)
T 2kj6_A 92 IIDL 95 (97)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8864
No 84
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.45 E-value=1.4e-13 Score=102.52 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=43.1
Q ss_pred CCChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHHHHHHhCCCCc
Q 022228 156 GNNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204 (300)
Q Consensus 156 g~~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyLl~GIP~~ 204 (300)
...|++.|++|++|| | +|+.+++||++++||++||||||++|||+.
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 467899999999999 9 899999999999999999999999999863
No 85
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=1.9e-13 Score=106.44 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=64.7
Q ss_pred CEEEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhcccCCCcEEE
Q 022228 1 MMKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---KV----LKDDTTLEENKVAENSFVV 72 (300)
Q Consensus 1 mM~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G---ki----L~D~~tL~d~gI~~g~~I~ 72 (300)
+|.|+|+..... .++++|++++||.+||++|+.+.| +|+++|||+|.| +. |+|+++|.+|+|++|++||
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~ 83 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH 83 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence 378888876543 689999999999999999999999 999999999986 54 5899999999999999999
Q ss_pred EEEec
Q 022228 73 IMLTK 77 (300)
Q Consensus 73 v~v~k 77 (300)
|+...
T Consensus 84 v~d~~ 88 (95)
T 1v6e_A 84 VIDHS 88 (95)
T ss_dssp EBCCS
T ss_pred EEECC
Confidence 87643
No 86
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.45 E-value=1.1e-13 Score=92.82 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=38.2
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GI 201 (300)
.++.|++|++|| |+|++|++||++++||+++|+|||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 378899999999 9999999999999999999999999987
No 87
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.44 E-value=8e-15 Score=127.97 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
|+|+||+++|++|.|+|++++||.+||.+|+...| +|+++|+|||+|++|+|+.+|+ ++++|||+++.+..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 89999999999999999999999999999999999 9999999999999999999998 88999999987643
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=4.4e-13 Score=104.62 Aligned_cols=76 Identities=11% Similarity=0.194 Sum_probs=72.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
|+|+||+.+|+.+.+.|.+++++..||++++++.| ++++++||+|+|+.|.++.|+++|+|.++|+|+|+++.+..
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 89
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.43 E-value=1.7e-13 Score=101.95 Aligned_cols=44 Identities=39% Similarity=0.385 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 156 g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
...+++.|++||+|| |+|++|++|||+++||+|||||||++|+.
T Consensus 26 ~~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 26 VAASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp SCCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CcccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 356799999999999 99999999999999999999999999954
No 90
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.40 E-value=2.8e-13 Score=92.13 Aligned_cols=41 Identities=34% Similarity=0.489 Sum_probs=38.3
Q ss_pred CChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 157 NNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
..|+..|++|++|| | +|+.+++||++++||++||||||++|
T Consensus 5 ~~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 35789999999999 9 79999999999999999999999987
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.40 E-value=3.2e-13 Score=103.23 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=63.3
Q ss_pred EEEEEEcCCCcEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--CeecC---CCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVE-VKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ--GKVLK---DDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ie-V~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~--GkiL~---D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+||+.+|+. .++ |++++||.+||++|+++.| +++++|+|+|+ +|.|+ |+++|++|||++|++|+|..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 789999999964 577 9999999999999999999 99999999987 48874 68899999999999998865
Q ss_pred e
Q 022228 76 T 76 (300)
Q Consensus 76 ~ 76 (300)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.39 E-value=2e-12 Score=95.77 Aligned_cols=71 Identities=11% Similarity=0.207 Sum_probs=68.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+|++.+|+.+.+.|.+++++..|+++++++.| +++..+||+|.|+.|.++.|.++|++.+|++|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999874
No 93
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.37 E-value=1.5e-12 Score=106.15 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=64.8
Q ss_pred EEEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhcccCCCcEEEE
Q 022228 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---KV----LKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G---ki----L~D~~tL~d~gI~~g~~I~v 73 (300)
|.|+|+...+. .++++|++++||.+||.+|+.+.| +|+++|||+|.| +. ++|+++|.+|||.+|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 78888876553 688999999999999999999999 999999999977 43 48999999999999999999
Q ss_pred EEec
Q 022228 74 MLTK 77 (300)
Q Consensus 74 ~v~k 77 (300)
+...
T Consensus 84 vd~~ 87 (122)
T 1t0y_A 84 VDVT 87 (122)
T ss_dssp EECT
T ss_pred EeCC
Confidence 8754
No 94
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=2.9e-12 Score=99.44 Aligned_cols=75 Identities=11% Similarity=0.201 Sum_probs=71.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|+|+|++.+|+.+.+.|.+++++..||++++++.| +++.++||+|+|+.|.++.|+++|++.+||+|+|++....
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999988764
No 95
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.37 E-value=7.1e-13 Score=92.82 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=40.8
Q ss_pred CChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 157 NNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
..|++.|++|++|| | +|+.|++||++++||++||||||++|++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 46899999999999 9 9999999999999999999999999975
No 96
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.36 E-value=5.3e-13 Score=125.60 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=66.8
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI---YQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi---~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
|+|+|| ++|++|.|+|++++||.+||++|++++| +|+++|||| |+||+|+|+.+|++|+|++|++|+||.+.
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 789999 6899999999999999999999999999 999999999 89999999999999999999999999654
No 97
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.36 E-value=7.5e-13 Score=100.60 Aligned_cols=44 Identities=30% Similarity=0.378 Sum_probs=40.9
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHh--C-CCCcc
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS--G-IPEQA 205 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~--G-IP~~~ 205 (300)
.++.|++||+|| |+|++|++|||+++||++||+|||++ | ||+.+
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~ 75 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDL 75 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhh
Confidence 488999999999 99999999999999999999999999 7 77654
No 98
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.35 E-value=6.2e-12 Score=94.88 Aligned_cols=70 Identities=9% Similarity=0.240 Sum_probs=67.6
Q ss_pred EEEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 2 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
|+|+|++.+|+ .+.+.|..++++..||++++++.| ++++++||+|.|+.|.++.|+++|++.+||+|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 89999999996 899999999999999999999999 89999999999999999999999999999999986
No 99
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.34 E-value=1.4e-12 Score=90.94 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=39.7
Q ss_pred CCChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 156 GNNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 156 g~~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
...|+..|++|++|| | +|+.|++||++++||++||||||++|
T Consensus 9 ~~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 457899999999999 9 99999999999999999999999986
No 100
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.33 E-value=7e-12 Score=97.52 Aligned_cols=74 Identities=11% Similarity=0.208 Sum_probs=70.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|.|+|++.+|+.+.|.|..++++..|+++++++.| ++++.+||+|.|+.|.++.|+.+|++.+|++|+|+++..
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 78999999999999999999999999999999999 899999999999999999999999999999999998754
No 101
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.31 E-value=2.1e-12 Score=93.57 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=39.2
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP~ 203 (300)
.+++|++|++|| |+|++|++|||+++||++||+|||+++..+
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 478999999999 999999999999999999999999999544
No 102
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.31 E-value=2.2e-12 Score=94.11 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHHHHHHhCCCCc
Q 022228 156 GNNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204 (300)
Q Consensus 156 g~~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyLl~GIP~~ 204 (300)
...|+..|++|++|| | +|+.+++|||+++||++||||||++++++.
T Consensus 16 e~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 16 EVRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 346789999999999 9 788889999999999999999999998863
No 103
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=7.9e-12 Score=99.26 Aligned_cols=75 Identities=11% Similarity=0.206 Sum_probs=71.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|+|+|++.+|+.+.|.|..++++..||++++++.| +++..+||+|.|+.|.++.|+.+|+|.++|+|+|++....
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 8999999999999999999999999999999999987654
No 104
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.29 E-value=2.9e-12 Score=91.26 Aligned_cols=43 Identities=33% Similarity=0.431 Sum_probs=39.9
Q ss_pred CCChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHHHHHHhCC
Q 022228 156 GNNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSGI 201 (300)
Q Consensus 156 g~~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyLl~GI 201 (300)
...|+..|++|++|| | +|+.+++||+++++|++||||||++|.
T Consensus 14 e~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 14 EERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 457899999999999 9 799999999999999999999999983
No 105
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.1e-12 Score=93.58 Aligned_cols=44 Identities=39% Similarity=0.671 Sum_probs=40.8
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCCc
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP~~ 204 (300)
..++.|++||+|| |+|++|++|||+++||++||+|||+.++++.
T Consensus 8 ~~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 8 PPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CCHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 3588999999999 9999999999999999999999999997753
No 106
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.26 E-value=1.3e-11 Score=99.03 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=71.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|.|+|++.+|+.+.|.|..++++..||++++++.| +++.++||+|.|+.|.++.|+.+|++.++|+|+|++....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999987653
No 107
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.25 E-value=2.3e-11 Score=96.87 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=69.4
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
|+|+|++ +|+.+.|.|..++++..||++++++.| +++..+||+|.|+.|.++.|..+|++.++|+|+|+++..
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 7899999 999999999999999999999999999 889999999999999999999999999999999998754
No 108
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.23 E-value=9.3e-12 Score=92.72 Aligned_cols=41 Identities=20% Similarity=0.463 Sum_probs=38.6
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
.++.|++|++|| |+|++|++|||+++||++||||||+++..
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 478999999999 99999999999999999999999999854
No 109
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.23 E-value=5e-12 Score=91.85 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=40.6
Q ss_pred CChHHHHHHHHhccCCCCCHHHHHHHHHHhcC-ChHHHHHHHHhCCCCc
Q 022228 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLYSGIPEQ 204 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyLl~GIP~~ 204 (300)
...+..|++|++|| |+|++|++||++++| |+++|+|||+.++++.
T Consensus 7 ~~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 7 GSSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CCSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 34466899999999 999999999999999 9999999999998753
No 110
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=92.63 Aligned_cols=43 Identities=26% Similarity=0.391 Sum_probs=40.1
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcC-ChHHHHHHHHhCCCCc
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLYSGIPEQ 204 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyLl~GIP~~ 204 (300)
.++.|++||+|| |+|++|++|||+.+| |+++|+|||++++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 378999999999 999999999999997 7999999999998864
No 111
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.22 E-value=1.2e-11 Score=81.23 Aligned_cols=39 Identities=31% Similarity=0.464 Sum_probs=36.3
Q ss_pred CChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 022228 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl 198 (300)
+++++.|++|++|| |+|++|++||+++.||+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 35788999999999 9999999999999999999999995
No 112
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.19 E-value=1.1e-11 Score=90.06 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=38.1
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcC-ChHHHHHHHHhCCCC
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLYSGIPE 203 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyLl~GIP~ 203 (300)
++.|++||+|| |+|++|++|||+++| |+++|+|||++++-+
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSGP 61 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 56899999999 999999999999998 999999999998643
No 113
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=83.65 Aligned_cols=38 Identities=34% Similarity=0.581 Sum_probs=35.6
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
.++.|++|++|| |+|++|++|||+. ||+++|+|||++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 478999999999 9999999999999 7999999999864
No 114
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.19 E-value=1.1e-11 Score=89.96 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=38.7
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhc-CChHHHHHHHHhCCCCc
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAY-NNPERAVEYLYSGIPEQ 204 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAaf-nNpdrAvEyLl~GIP~~ 204 (300)
++.|++||+|| |+|++|++|||+++ +|+++|+|||+.++++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 46799999999 99999999999995 89999999999998764
No 115
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.16 E-value=9.1e-11 Score=91.44 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=63.8
Q ss_pred CEEEEEEc---CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC------ee-c-CCCCchhhcccCCCc
Q 022228 1 MMKIFVKT---LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG------KV-L-KDDTTLEENKVAENS 69 (300)
Q Consensus 1 mM~I~VKt---l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G------ki-L-~D~~tL~d~gI~~g~ 69 (300)
|++|+|+. .+|+.+++.+..++||.+||.+|+..+| +|+..|||+|.+ .+ | +|+++|.+|+|.+|+
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 36787875 5788899999999999999999999999 999999999863 22 5 677899999999999
Q ss_pred EEEEEEec
Q 022228 70 FVVIMLTK 77 (300)
Q Consensus 70 ~I~v~v~k 77 (300)
+|||....
T Consensus 86 ~I~V~d~~ 93 (97)
T 1wjn_A 86 CLLVRWSG 93 (97)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99998754
No 116
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=99.15 E-value=1.7e-11 Score=87.89 Aligned_cols=32 Identities=47% Similarity=0.858 Sum_probs=30.5
Q ss_pred CchhhhhCcHHHHHHHHHHHhCCCchHHHHhc
Q 022228 263 GSLDFLRNSPQFQVLRAMVQANPQLFPCFKSW 294 (300)
Q Consensus 263 ~~l~~Lr~~pqf~~lR~~vq~nP~~L~~~lq~ 294 (300)
++|+|||++|||++||++||+||++|++|||+
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~vq~NP~~L~~lLqq 33 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 33 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chHHHHHcChHHHHHHHHHHHCHHHHHHHHHH
Confidence 47999999999999999999999999999986
No 117
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5.2e-11 Score=90.73 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=40.1
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCCc
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP~~ 204 (300)
.++.|++||+|| |+|++|++|||+++||+++|+|||++++.+.
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 478999999999 9999999999999999999999999997653
No 118
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.12 E-value=5.7e-11 Score=84.29 Aligned_cols=38 Identities=24% Similarity=0.599 Sum_probs=36.5
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
++.|..|++|| |.++|+.+||++.-||.|||+|||++-
T Consensus 20 ~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 20 RQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 67899999999 999999999999999999999999975
No 119
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=99.11 E-value=9.6e-12 Score=91.90 Aligned_cols=33 Identities=45% Similarity=0.803 Sum_probs=31.2
Q ss_pred CCchhhhhCcHHHHHHHHHHHhCCCchHHHHhc
Q 022228 262 AGSLDFLRNSPQFQVLRAMVQANPQLFPCFKSW 294 (300)
Q Consensus 262 ~~~l~~Lr~~pqf~~lR~~vq~nP~~L~~~lq~ 294 (300)
.++|+|||++|||++||++||+||++|++|||+
T Consensus 3 ~~~l~~Lr~~Pqf~qlR~~vqqNP~lL~~lLqq 35 (72)
T 1pve_A 3 HMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 35 (72)
T ss_dssp TCTTGGGTTCTTTTTHHHHHTTCGGGHHHHHHH
T ss_pred CchHHHHHcChHHHHHHHHHHHCHHHHHHHHHH
Confidence 467999999999999999999999999999986
No 120
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.11 E-value=7.3e-11 Score=90.16 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=39.8
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcC-ChHHHHHHHHhCCCCc
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLYSGIPEQ 204 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyLl~GIP~~ 204 (300)
.+++|++||+|| |+|++|++|||+++| |+++|+|||++++++.
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 478999999999 999999999999985 9999999999998764
No 121
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.06 E-value=1.4e-10 Score=81.40 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=37.5
Q ss_pred ChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHHHHHHhCC
Q 022228 158 NLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSGI 201 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyLl~GI 201 (300)
.|++.|++|++|| | +++.+++||+++.+|.+||||||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 6789999999999 9 666689999999999999999999874
No 122
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.02 E-value=2.6e-10 Score=93.29 Aligned_cols=41 Identities=37% Similarity=0.601 Sum_probs=39.6
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
.++.|++|++|| |+|++|++|||+++||++||+|||++|++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 588999999999 99999999999999999999999999987
No 123
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=99.02 E-value=3.3e-10 Score=90.14 Aligned_cols=43 Identities=30% Similarity=0.481 Sum_probs=39.9
Q ss_pred CChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 157 NNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
..|++.|++|++|| | +|+++++||+++++|++||||||++|.+
T Consensus 64 ~~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 64 SQWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp CTTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred cchHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 36789999999999 9 8899999999999999999999999954
No 124
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.00 E-value=2.2e-09 Score=86.46 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=69.4
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
|+|+|++.+|+.+.|.|..++++..|++.++++.| ++...+||+|.|+.|.++.|..++++.+||+|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 67899999999999999999999999999999999 99999999999999999999999999999999999754
No 125
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.95 E-value=7.5e-10 Score=84.67 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=37.2
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GI 201 (300)
++.|++|++|| |+|++|++||++.++|+++|+|||+...
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 78999999999 9999999999999999999999999873
No 126
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.87 E-value=4.5e-10 Score=76.58 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=38.9
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
+-+++|++|++|| |+|.+|++||.+.-+|.++|++||++++-
T Consensus 3 ~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 3 QEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 4478999999999 99999999999999999999999998853
No 127
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.86 E-value=5.8e-10 Score=95.56 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=26.3
Q ss_pred CCCchhhhh-CcHHHHHHHHHHHhCCCchHHHHhc
Q 022228 261 GAGSLDFLR-NSPQFQVLRAMVQANPQLFPCFKSW 294 (300)
Q Consensus 261 ~~~~l~~Lr-~~pqf~~lR~~vq~nP~~L~~~lq~ 294 (300)
++++|+||| ++|||++||++||+||+||++|||+
T Consensus 21 ~~~~l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqq 55 (171)
T 2qsf_X 21 QGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLEN 55 (171)
T ss_dssp -------CCCCHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred ccCCHHHHHhcCHHHHHHHHHHHHCHHHHHHHHHH
Confidence 467899999 9999999999999999999999995
No 128
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.79 E-value=6.2e-09 Score=71.41 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=35.6
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
.+..|++||+|| |+|++|++||+.+.||.|-|..+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 467899999999 99999999999999999999999974
No 129
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.77 E-value=3.2e-08 Score=86.94 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=70.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~~ 81 (300)
|+|+|+ .+|+.+.+.|..++++..||+.++++.| ++..++||+|.|+.|.++.|..++++.+||+|+|+.......
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 678887 4899999999999999999999999999 999999999999999999999999999999999999876544
No 130
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.75 E-value=1.1e-08 Score=70.45 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=35.5
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
.|..|..||+|| |+|++|++||+.+.||.|-|..+|+.
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 467799999999 99999999999999999999999974
No 131
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.8e-08 Score=87.60 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=69.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
|.|+|+ .+|+.+.|.|..++++..|++.++++.| ++...+||+|+|+.|.++.|..++++.+||+|.|++.....
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 678887 4899999999999999999999999999 89999999999999999999999999999999999877553
No 132
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.72 E-value=9.4e-09 Score=83.24 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=37.0
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
+.+.|.+|++|| |++++|+.||+...||.|||||||+++
T Consensus 76 ~~~~v~~L~eMG---F~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 76 FLQLMSKFKEMG---FELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567899999999 999999999999999999999999986
No 133
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.68 E-value=2.6e-08 Score=66.30 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=38.6
Q ss_pred CCChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 156 g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
|+.+|..|..||+|| |+|+.|++||-.+-||.+-|.+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 567899999999999 99999999999999999999999973
No 134
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.64 E-value=1.6e-08 Score=76.31 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=58.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee---c--CCCCchhhcccCCCcEEEEE
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKV---L--KDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~Gki---L--~D~~tL~d~gI~~g~~I~v~ 74 (300)
+|.|+||+.+| .+.|+|++++||.+||++|.+..+ ++.+.+.|.++-.. | .++.+|+++||+.||.|+|.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 37899998877 788999999999999999999999 88788777654433 3 47789999999999999874
No 135
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.61 E-value=3.1e-07 Score=68.47 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=66.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAA-QQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
+.+.++..+...+.+.|.++.+|.+|-+..+.+.+ ++.+ .++|.|.|..|+.+.++.||++.++|.|.||+
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 56778888888899999999999999999999999 9898 99999999999999999999999999999986
No 136
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.59 E-value=5.6e-08 Score=67.14 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=36.6
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
.|..|..||+|| |+|+.|++||+.+-||.+-|..+|+.=
T Consensus 7 ~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 7 LSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred ChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 478999999999 999999999999999999999999854
No 137
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.51 E-value=6.2e-07 Score=70.08 Aligned_cols=70 Identities=9% Similarity=0.219 Sum_probs=65.0
Q ss_pred EEEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 2 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
+.|+|+..+|+ .+.|.|..+.++..|.+..+++.| ++....||+|.|..|..+.|..++++.+||+|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67888888884 788999999999999999999999 88999999999999999999999999999999886
No 138
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.45 E-value=2.2e-08 Score=88.16 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=0.4
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~~ 80 (300)
|.|+| ..+|+.+.|.|..++++..||+.++++.| +++..+||+|+|+.|.++.|..++++.+||+|.|+......
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 67888 67899999999999999999999999999 89999999999999999999999999999999999876553
No 139
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.43 E-value=1.6e-07 Score=82.54 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=39.6
Q ss_pred cCCChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 155 AGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 155 ~g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
.+..+++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 159 ~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 159 SSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4567899999999999 99999999999999999999999986
No 140
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.38 E-value=4.3e-07 Score=71.41 Aligned_cols=43 Identities=30% Similarity=0.581 Sum_probs=40.9
Q ss_pred ChHHHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 022228 158 NLEGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203 (300)
Q Consensus 158 ~~e~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP~ 203 (300)
++++.|..||+| | |++++|+.||.-+.++.++|++||+.|.++
T Consensus 38 d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 38 DFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred cHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 468899999999 9 999999999999999999999999999985
No 141
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.36 E-value=3.1e-06 Score=65.57 Aligned_cols=72 Identities=10% Similarity=0.178 Sum_probs=67.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
+.|+|+ .+|..+.+.|..+...+.|.+..+.+.| +.+..+|++|.|..+.++.|-.++++.++|+|.+++.+
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 678888 4788999999999999999999999999 88999999999999999999999999999999999865
No 142
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.30 E-value=5.9e-07 Score=72.63 Aligned_cols=39 Identities=28% Similarity=0.617 Sum_probs=36.4
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
.-.+.|++|++|| |+++.|++||++..||+++|+|||+.
T Consensus 7 ~e~~~v~~l~~MG---Fp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 7 SERQCVETVVNMG---YSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3467899999999 99999999999999999999999986
No 143
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.25 E-value=9e-07 Score=61.58 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 156 GNNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 156 g~~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
.+.|...+.+|.||| | +++..++|||...+|.++||++|+.+
T Consensus 6 ee~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 6 SGQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CTTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 456788999999999 9 99999999999999999999999975
No 144
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.19 E-value=4.8e-06 Score=73.46 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=68.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
+.|+|++ +|+.+.+.|..++++..||+..+++.| ++..++||+|.|+.+.+++|..++.+.++|+|.++.....
T Consensus 22 i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 5678887 778888999999999999999999999 9999999999999999999999999999999999977655
No 145
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.19 E-value=8.2e-07 Score=72.37 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=37.6
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcC-ChHHHHHHHHhCCCC
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLYSGIPE 203 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyLl~GIP~ 203 (300)
++.|++|++|| |++..|++|||+..| |.++|++||+...++
T Consensus 4 ~~~l~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 4 ESSVMQLAEMG---FPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp THHHHHHHTTS---SCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 46899999999 999999999999988 899999999998654
No 146
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.08 E-value=2.5e-06 Score=73.04 Aligned_cols=41 Identities=29% Similarity=0.487 Sum_probs=38.2
Q ss_pred CChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
++.+++|++|++|| |+|+.|++||.++.+|.+.|++||+.+
T Consensus 128 pee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 128 PEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34578899999999 999999999999999999999999976
No 147
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.07 E-value=1.6e-05 Score=61.66 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=52.0
Q ss_pred EEEEcC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec--CCCCchhhcccCC-CcEEEEE
Q 022228 4 IFVKTL-KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVL--KDDTTLEENKVAE-NSFVVIM 74 (300)
Q Consensus 4 I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL--~D~~tL~d~gI~~-g~~I~v~ 74 (300)
|.|=.+ ++..+.+.|++++||..||++|++++| +++++|+|||.||.| +.++.-..|--.. ..-|+++
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 444444 567889999999999999999999999 999999999999865 5556666664433 3444444
No 148
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.99 E-value=8.9e-06 Score=56.11 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=35.0
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcC-ChHHHHHHHHh
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLYS 199 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyLl~ 199 (300)
...++++.|++|| |+++.|++||+..-| ..+.|+|||.-
T Consensus 8 vn~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 8 VNRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp CCHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3468899999999 999999999999877 79999999973
No 149
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.97 E-value=9.7e-07 Score=83.78 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
+.|+|++ +|+.+.+.|..++++..|++..+++.| ++.+.+|++|+|+.|.++.|.+++++++||+|.|+.....
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 5677776 678888999999999999999999999 8899999999999999999999999999999999987543
No 150
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.95 E-value=1.8e-05 Score=59.67 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=60.5
Q ss_pred EEEEEEc--CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-C--CCeEEEeCCeecCCCCchhhcccCCCcEEEE
Q 022228 2 MKIFVKT--LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYP-A--AQQMLIYQGKVLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKt--l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-~--~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v 73 (300)
+.|+|.. ..++.|.+.+....||+.|++.+.+.++.+ .+ . -++|+.-+|.+|.+++.|.||+|.+||.|.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~-~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVS-MPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCC-SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCC-cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 5677774 689999999999999999999999998843 22 1 2568888999999999999999999999976
No 151
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.89 E-value=2.2e-05 Score=64.12 Aligned_cols=68 Identities=26% Similarity=0.291 Sum_probs=56.4
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-------------------------------------Ce
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAA-------------------------------------QQ 45 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-------------------------------------~q 45 (300)
.|+|+.++|+..++.|+.+.||.+++..|+.+.| +... .+
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 4899999999999999999999999999999999 5422 34
Q ss_pred EEEe--CCeecCCCCchhhcccCCCcEEEE
Q 022228 46 MLIY--QGKVLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 46 kLi~--~GkiL~D~~tL~d~gI~~g~~I~v 73 (300)
||.. .+..|+++++|.++||.++++|.+
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence 4422 236788899999999999999654
No 152
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.81 E-value=4.9e-06 Score=79.45 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=38.5
Q ss_pred CChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
.+-+++|++|++|| |+|++|++||+++.+|.+||++||+++
T Consensus 323 ~ee~eaI~rL~~mG---F~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 323 PQEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp TTTHHHHHHHHHHT---CCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred CcCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 45688999999999 999999999999999999999999986
No 153
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.79 E-value=8.7e-05 Score=56.89 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=69.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
|.|+|-..+++.+.|.|.++.++.++-+..++++| +.+++-.|.|++|.|+-+..+.-.||-+|..|.++.+.+.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 58999999999999999999999999999999999 8889999999999999999999999999999999876543
No 154
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.77 E-value=3.4e-06 Score=80.72 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=0.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~~ 79 (300)
+.|+|+. +++...|.|..++++..||+..+++.| ++..+++|+|+|+.|.+++|.+++++++||+|.+++....
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~g 104 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIG 104 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccc
Confidence 4567776 677788999999999999999999999 9999999999999999999999999999999999987664
No 155
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.60 E-value=0.00025 Score=53.34 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=58.8
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec---CCCCchhhcccCCCcEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVL---KDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL---~D~~tL~d~gI~~g~~I~v~ 74 (300)
.+|.||..+|+.+.-.+..++||.+|...|.. .+ +.....+|+ |-.|.| +.+++|.++|+..+.+|+|-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 57899999999988899999999999999987 56 567888998 557888 34689999999998888774
No 156
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.54 E-value=7e-05 Score=67.97 Aligned_cols=42 Identities=29% Similarity=0.405 Sum_probs=39.5
Q ss_pred cCCChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 155 AGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 155 ~g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
.+.+|++.|++|++|| |+|++|+.||+-...|.++|+|||+.
T Consensus 211 ~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 211 SSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4567899999999999 99999999999999999999999985
No 157
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.53 E-value=0.0011 Score=52.44 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=60.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-CCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLK--D-DTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL~--D-~~tL~d~gI~~g~~I~v~v~ 76 (300)
.+|.||..+|+.+.-.+..++||.+|...|....+ .+.....|+ |-.|.|. | +++|+++|+....+|+|...
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 57999999999999999999999999999999877 556777886 5678886 3 67999999998877766543
No 158
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.11 E-value=0.0014 Score=52.99 Aligned_cols=70 Identities=17% Similarity=0.367 Sum_probs=59.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec--CC-CCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVL--KD-DTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL--~D-~~tL~d~gI~~g~~I~v~v 75 (300)
.+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.| .| +++|.++|+.....|+|..
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 579999999999999999999999999999876 6 666788887 568888 34 6899999999988887653
No 159
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.85 E-value=0.0093 Score=46.92 Aligned_cols=70 Identities=11% Similarity=0.141 Sum_probs=57.8
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--CCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLK--DDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL~--D~~tL~d~gI~~g~~I~v~v 75 (300)
.+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.|. .+++|+++||....+|+|..
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 579999999999888999999999999999865 4 446778887 5578886 36899999999888776643
No 160
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.67 E-value=0.0058 Score=49.53 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=54.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCchhhcccCCCcE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLKD-DTTLEENKVAENSF 70 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~GkiL~D-~~tL~d~gI~~g~~ 70 (300)
.+|.||..+|+.+.-.+..++||.+|+..|..... + +......|+ |-.|.|.| +++|.++|+.....
T Consensus 53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~-~-~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARP-A-MAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCS-G-GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCc-C-CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 46889999999999999999999999999988632 1 445677887 56899975 58999999997443
No 161
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.66 E-value=0.0019 Score=45.59 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=37.3
Q ss_pred ChHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 158 NLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 158 ~~e~~I~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
..|+.|..|.+| . ++++.++..|++.-||.|+|++.|+.-
T Consensus 8 ~~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SCHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 458999999999 7 899999999999999999999999975
No 162
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.36 E-value=0.00056 Score=60.56 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 022228 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GI 201 (300)
.+++.|+++++|| |+|+++++||+-.--+.++|+|.|+.|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 4578999999999 9999999999999999999999999884
No 163
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.36 E-value=0.024 Score=42.79 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=60.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY---QGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~---~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
+++.|.....+++.+.|.+..++.+|--.|+++.. +.++...|.. .+..|+-+++|.||||++ |+.+-.++
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 56778877888899999999999999999999988 8899888875 467889999999999997 66666554
No 164
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=96.27 E-value=0.0065 Score=41.27 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=36.0
Q ss_pred hHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 159 LEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 159 ~e~~I~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
-+..|+.|+|| . -++++|.++|+++.+|.||||..||++
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47889999999 5 699999999999999999999999987
No 165
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.13 E-value=0.018 Score=41.66 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=39.9
Q ss_pred ccCCChHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 154 VAGNNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 154 ~~g~~~e~~I~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
+.+.++++.|++|.+| - ++++-++..|++.-+|.|+|++-||.-
T Consensus 13 ~~~~~~~~~v~~L~~MFP~---lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 13 VRRLEFNQAMDDFKTMFPN---MDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCCSHHHHHHHHHHCSS---SCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3467889999999999 5 799999999999999999999999863
No 166
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.02 E-value=0.053 Score=42.93 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=49.9
Q ss_pred EEEEEEcC--CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCeecCCC------------
Q 022228 2 MKIFVKTL--KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY----QGKVLKDD------------ 57 (300)
Q Consensus 2 M~I~VKtl--~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip------~~~qkLi~----~GkiL~D~------------ 57 (300)
|.|+|-.. .+..+.+.|-..+||.++|+||-...-+. +| ++.+.|-+ .|++|.|.
T Consensus 12 ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkr 90 (111)
T 4e71_A 12 LTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKR 90 (111)
T ss_dssp EEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCC
T ss_pred EEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceE
Confidence 34444432 24557788889999999999997765322 33 34666765 35777662
Q ss_pred -CchhhcccCCCcEEEEEE
Q 022228 58 -TTLEENKVAENSFVVIML 75 (300)
Q Consensus 58 -~tL~d~gI~~g~~I~v~v 75 (300)
.||..|+|.+|.+|.++-
T Consensus 91 LNTL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 91 VNTLMHYNVRDGATLILSK 109 (111)
T ss_dssp CCBHHHHTCCTTCEEEEEE
T ss_pred ecchhhcCCCCCCEEEEEe
Confidence 379999999999998764
No 167
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=95.99 E-value=0.0054 Score=64.38 Aligned_cols=42 Identities=40% Similarity=0.692 Sum_probs=38.3
Q ss_pred CChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 022228 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GI 201 (300)
...++.|..|++|| |+++++++||++..||.+||||||++..
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~~ 759 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHI 759 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcCc
Confidence 34578999999999 9999999999999999999999999863
No 168
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.62 E-value=0.1 Score=37.47 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=46.7
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
+|+|+|..-. ....+++....||.+|.+.+ + ++.....+..+|+++..+. -+++||.|.++-
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 3888887432 34566777888999998875 4 5567777889999997665 688999998863
No 169
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.59 E-value=0.034 Score=40.55 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=43.3
Q ss_pred ccCCChHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCChHHHHHHHHhC-CCCccc
Q 022228 154 VAGNNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG-IPEQAE 206 (300)
Q Consensus 154 ~~g~~~e~~I~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyLl~G-IP~~~~ 206 (300)
+++.+.+..|.+|.++ - |....|.++|..-.+|+|+.|.+|+.| +|.++.
T Consensus 8 ~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~ 60 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILEERLAPTLS 60 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTT
T ss_pred CcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHH
Confidence 4677889999999998 5 779999999999778999999999999 776643
No 170
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.58 E-value=0.03 Score=41.02 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=46.4
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
|+|+||....+...+++....||.+|-++ .+ ++++..-+..+|+++..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 79999977555566899999999998654 56 8888887788999986665 2348888765
No 171
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.48 E-value=0.076 Score=43.56 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=47.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCe-ecCCC-------------CchhhcccCC
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYPA------AQQMLIY----QGK-VLKDD-------------TTLEENKVAE 67 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~------~~qkLi~----~Gk-iL~D~-------------~tL~d~gI~~ 67 (300)
..+.+.|-..|||.++|+||-+..-++ +|. +++-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 457888889999999999998876543 543 3455554 344 46653 2899999999
Q ss_pred CcEEEEEEec
Q 022228 68 NSFVVIMLTK 77 (300)
Q Consensus 68 g~~I~v~v~k 77 (300)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887654
No 172
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=95.23 E-value=0.03 Score=40.10 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=33.3
Q ss_pred HHHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 022228 160 EGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (300)
Q Consensus 160 e~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl 198 (300)
.+.|..|.++ | +...+|..||..+.+|.+.|++||-
T Consensus 10 ~~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 10 KELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CHHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3679999997 8 9999999999999999999999995
No 173
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.83 E-value=0.19 Score=44.41 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=50.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEe-C----CeecCC-CCchhhcccCCCcEEEEEEec
Q 022228 14 FDVEVKPEDTVFDVKMKIETVQGSDVYPAA-QQMLIY-Q----GKVLKD-DTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 14 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~qkLi~-~----GkiL~D-~~tL~d~gI~~g~~I~v~v~k 77 (300)
+++.+...+||.+|+++++...+ ++.+ +.||-. . ...|.| +.+|.+++|.++..|+|=++.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 55778999999999999999999 8887 688853 2 346665 589999999999999887775
No 174
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.69 E-value=0.26 Score=37.53 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=48.7
Q ss_pred EEEEEEcCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC------CCCCeEEEeCCeecCCCCchhhcccC
Q 022228 2 MKIFVKTLK------G-TSFDVEVKPEDTVFDVKMKIETVQGS--DVY------PAAQQMLIYQGKVLKDDTTLEENKVA 66 (300)
Q Consensus 2 M~I~VKtl~------g-~~~~ieV~~~~TV~~LK~kI~~~~g~--~~i------p~~~qkLi~~GkiL~D~~tL~d~gI~ 66 (300)
|+|+||.+. | ....+++....||.+|.+.+...... ..+ ......+..+|+.... ++-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 889998764 3 46778888889999999999876320 000 0244667789988763 56789
Q ss_pred CCcEEEEE
Q 022228 67 ENSFVVIM 74 (300)
Q Consensus 67 ~g~~I~v~ 74 (300)
+||.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998876
No 175
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.65 E-value=0.27 Score=39.69 Aligned_cols=66 Identities=27% Similarity=0.294 Sum_probs=48.0
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------Cchhhccc
Q 022228 10 KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY----QGK-VLKDD-------------TTLEENKV 65 (300)
Q Consensus 10 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip------~~~qkLi~----~Gk-iL~D~-------------~tL~d~gI 65 (300)
.+..+.+.|-..|||.++|+||-...-+. +| ++++.|-| .|+ +|.|. .||..|+|
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 44567888889999999999998765332 44 35667765 244 46652 37899999
Q ss_pred CCCcEEEEEEe
Q 022228 66 AENSFVVIMLT 76 (300)
Q Consensus 66 ~~g~~I~v~v~ 76 (300)
.+|.+|.++.+
T Consensus 94 ~dgatv~l~~~ 104 (127)
T 3h6n_A 94 PEGASLAMSLI 104 (127)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999988754
No 176
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.35 E-value=0.2 Score=40.01 Aligned_cols=65 Identities=29% Similarity=0.382 Sum_probs=45.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-C---Ce-ecCCC-------------CchhhcccCC
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY-Q---GK-VLKDD-------------TTLEENKVAE 67 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip------~~~qkLi~-~---Gk-iL~D~-------------~tL~d~gI~~ 67 (300)
..+.+.|-..+||.++|+||-...-+. +| ++.+.|-+ . |+ +|.|. .||.+|+|.+
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 347778889999999999997765322 44 34556655 2 33 45541 3799999999
Q ss_pred CcEEEEEEec
Q 022228 68 NSFVVIMLTK 77 (300)
Q Consensus 68 g~~I~v~v~k 77 (300)
|.+|.++-+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999887553
No 177
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.33 E-value=0.22 Score=43.59 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=50.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEE--e-CC--eecCC-CCchhhcccCCCcEEEEEEec
Q 022228 14 FDVEVKPEDTVFDVKMKIETVQGSDVYPAA-QQMLI--Y-QG--KVLKD-DTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 14 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~qkLi--~-~G--kiL~D-~~tL~d~gI~~g~~I~v~v~k 77 (300)
+.+.+...+||.+|++++....+ ++.+ +.||- | .+ ..|+| +++|.+++|.++..|+|-++.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 66788999999999999999999 8876 68884 3 22 45666 579999999999999887774
No 178
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.70 E-value=0.28 Score=46.00 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=54.7
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCCCCeEEEe------CCeecCCCCchhhcccCCCcEEEEE
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSD-VYPAAQQMLIY------QGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~-~ip~~~qkLi~------~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
.++|... +.+-++.++++.||.++..+|.++.... ..+.++--|.. +|+-|+++++|..|++.+++.|...
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 4445433 6677899999999999999998886410 13466667766 5678999999999999999988765
No 179
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.69 E-value=0.15 Score=36.86 Aligned_cols=65 Identities=5% Similarity=0.180 Sum_probs=44.2
Q ss_pred EEEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPA--AQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 2 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~--~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
|+|+||.+..- .-.+++ ...||.+|++.+....+ +.. ....+..+|+.+.+ .+.-+++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 56888866431 134666 56899999999986543 221 45667778888543 24568899999886
No 180
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=92.47 E-value=0.82 Score=34.72 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=42.9
Q ss_pred CEEEEEEcCC-------C-cEEEEEeC--CCCCHHHHHHHHHHHhCCCCCCC--------C----CeEEEeCCeecCCCC
Q 022228 1 MMKIFVKTLK-------G-TSFDVEVK--PEDTVFDVKMKIETVQGSDVYPA--------A----QQMLIYQGKVLKDDT 58 (300)
Q Consensus 1 mM~I~VKtl~-------g-~~~~ieV~--~~~TV~~LK~kI~~~~g~~~ip~--------~----~qkLi~~GkiL~D~~ 58 (300)
||+|+|+... | +.+++++. ...||.+|.+.+.++... ... . ...+..+|+..+
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~--~~~~l~~~~~~~~lr~~~~v~VN~~~~~--- 75 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMIN--NPNDVSIFIEDDSIRPGIITLINDTDWE--- 75 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCS--SGGGHHHHEETTEECTTEEEEETTEEGG---
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCch--hhHHHhhhccCCccccCeEEEECCEEcc---
Confidence 7999998652 2 45667776 678999999999888631 100 1 112333444211
Q ss_pred ch--hhcccCCCcEEEEE
Q 022228 59 TL--EENKVAENSFVVIM 74 (300)
Q Consensus 59 tL--~d~gI~~g~~I~v~ 74 (300)
.+ .++-+++||.|.++
T Consensus 76 ~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 76 LEGEKDYILEDGDIISFT 93 (99)
T ss_dssp GGTGGGCBCCTTCEEEEE
T ss_pred ccCCCCcCcCCCCEEEEE
Confidence 11 35679999998876
No 181
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=92.28 E-value=0.19 Score=37.89 Aligned_cols=61 Identities=10% Similarity=0.188 Sum_probs=43.0
Q ss_pred EEEEEEcCCCcEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPE-DTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~-~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+| +|+.+ ++... .||.+|.+.+ + ++.....+..+|+++..+ ...+.-|++||.|-|+-
T Consensus 21 M~I~v---NGe~~--el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 21 HMLQL---NGKDV--KWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp -CEEE---TTEEE--CCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred eEEEE---CCEEE--ECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 55555 57654 45665 8999998865 5 556777888999998543 34455689999998874
No 182
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=92.24 E-value=0.93 Score=33.46 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=41.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCC---CCC-----CCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETVQGSD---VYP-----AAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~~g~~---~ip-----~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
+...+++....||.+|++.+......- .+. .....+..+|+.... ++-+++||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 567888888889999999998775300 000 023577789988865 4568899999886
No 183
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=92.22 E-value=0.09 Score=35.83 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=32.3
Q ss_pred ChHHHHHHHHhccCCCCCHHHH--HHHHHHhcCChHHHHHHH
Q 022228 158 NLEGAIQQILDMGGGTWDRDTV--VRALRAAYNNPERAVEYL 197 (300)
Q Consensus 158 ~~e~~I~~i~eMG~~~f~r~qv--~~ALrAafnNpdrAvEyL 197 (300)
..+++|.+|++|| |+-+-- .+.|.+..+|..+|++-|
T Consensus 9 rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 9 RLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHh
Confidence 4678999999999 976654 699999999999999987
No 184
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=92.08 E-value=0.1 Score=54.65 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=37.3
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCC-hHHHHHHHHhCCCC
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNN-PERAVEYLYSGIPE 203 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnN-pdrAvEyLl~GIP~ 203 (300)
.++.|++|++|| |++..+++||.+.-|+ .++|++||+..+-+
T Consensus 652 d~~~l~~L~~mG---f~~~~~~kal~~t~n~~~e~a~~wl~~hmdd 694 (854)
T 3ihp_A 652 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 694 (854)
T ss_dssp -CHHHHHHHHHT---CCHHHHHHHHHHTTSCCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhcC---CCHHHHHHHHhhcCCCchHHHhHHHhhccCc
Confidence 357899999999 9999999999999885 99999999988654
No 185
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=91.95 E-value=0.38 Score=36.02 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=39.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG 51 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G 51 (300)
|+|+|..- -++.|.|..+.+..+|.++|.++.+ ++.+..+|.|+.
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECC
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeC
Confidence 67777754 6899999999999999999999999 888999999964
No 186
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=91.82 E-value=0.24 Score=39.23 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=42.3
Q ss_pred EEEEEEcCC------C--cEEEEEeCC---CCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCe------ecCCCCc---h
Q 022228 2 MKIFVKTLK------G--TSFDVEVKP---EDTVFDVKMKIETVQGSDVYPAAQQMLIY-QGK------VLKDDTT---L 60 (300)
Q Consensus 2 M~I~VKtl~------g--~~~~ieV~~---~~TV~~LK~kI~~~~g~~~ip~~~qkLi~-~Gk------iL~D~~t---L 60 (300)
|+|+|+... | +.+++++.. ..||.+|...|.+.+. ...-+|+. +|+ +|-++.. |
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 899998664 3 366788873 3699999999887752 12222221 121 2222221 1
Q ss_pred --hhcccCCCcEEEEEE
Q 022228 61 --EENKVAENSFVVIML 75 (300)
Q Consensus 61 --~d~gI~~g~~I~v~v 75 (300)
.++-+++||.|.++-
T Consensus 87 ~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CTTTCBCCSSEEEEEEE
T ss_pred CCcCcCCCCCCEEEEeC
Confidence 357799999987764
No 187
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=91.62 E-value=0.54 Score=35.85 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=43.8
Q ss_pred CEEEEEEcCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC-CC----CCe-------EEEeCCeecCCCCc
Q 022228 1 MMKIFVKTLK------G-TSFDVEVKPEDTVFDVKMKIETVQGS--DVY-PA----AQQ-------MLIYQGKVLKDDTT 59 (300)
Q Consensus 1 mM~I~VKtl~------g-~~~~ieV~~~~TV~~LK~kI~~~~g~--~~i-p~----~~q-------kLi~~GkiL~D~~t 59 (300)
||+|+|+... | +.++++ ..||.+|.+.+...... ..+ .. ... .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 7899999765 3 344444 58999999999877420 001 00 123 5677887763221
Q ss_pred hhhcccCCCcEEEEE
Q 022228 60 LEENKVAENSFVVIM 74 (300)
Q Consensus 60 L~d~gI~~g~~I~v~ 74 (300)
-.++-+++||.|.++
T Consensus 79 ~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 79 GLETLLKDSDEIGIL 93 (99)
T ss_dssp STTSCCCTTEEEEEE
T ss_pred CCCCCCCCCCEEEEE
Confidence 124468999998876
No 188
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=91.17 E-value=1.2 Score=39.98 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=56.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEe---CC--eecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYP-AAQQMLIY---QG--KVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-~~~qkLi~---~G--kiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|.|.|..++| ++++.|+.+.|+.+|-+.|+.+.| +. .+..-|.| +| ..|+.++.|.+.+++.+..+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG---LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC---CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 6788998998 788999999999999999999999 43 34455655 34 347888899888776666666666
Q ss_pred ecCC
Q 022228 76 TKNK 79 (300)
Q Consensus 76 ~k~~ 79 (300)
+++-
T Consensus 78 r~kf 81 (294)
T 1ef1_A 78 RAKF 81 (294)
T ss_dssp EESS
T ss_pred EEEE
Confidence 6543
No 189
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=91.11 E-value=1.3 Score=40.21 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=56.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEe--CCe--ecCCCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYP-AAQQMLIY--QGK--VLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-~~~qkLi~--~Gk--iL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
|.+.|..++| ++.+.|+.+.|+.+|-+.|+.+.| +. .+..-|.| +|. .|+.+++|.+.+++.+..+.+..+
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG---LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC---CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 5788999998 888999999999999999999999 43 34455555 443 478889999987766666655555
Q ss_pred cC
Q 022228 77 KN 78 (300)
Q Consensus 77 k~ 78 (300)
++
T Consensus 99 ~k 100 (314)
T 1h4r_A 99 AK 100 (314)
T ss_dssp ES
T ss_pred EE
Confidence 54
No 190
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=91.09 E-value=0.14 Score=42.85 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=31.6
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHH
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYL 197 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL 197 (300)
+...|.+|++.| -|+|++|+.||+.+-+|.++|+--|
T Consensus 102 R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 102 RRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHH
Confidence 345788899999 3399999999999999999999655
No 191
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=90.02 E-value=0.67 Score=34.78 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=33.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY 49 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~ 49 (300)
|||+|- .++..|.|.|..+.+..+||.||..+.. + +.+.|++
T Consensus 13 ~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ 54 (85)
T 1ip9_A 13 TKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQT 54 (85)
T ss_dssp EEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEE
T ss_pred eEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEE
Confidence 666665 3567999999999999999999999988 4 4555543
No 192
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=89.82 E-value=1 Score=33.54 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=44.1
Q ss_pred EEEEEEcCC------CcEEEEEeCCCCCHHHHHHHHHHHhCC------C----CCCCCCeEEEeCCeecCCCCchhhccc
Q 022228 2 MKIFVKTLK------GTSFDVEVKPEDTVFDVKMKIETVQGS------D----VYPAAQQMLIYQGKVLKDDTTLEENKV 65 (300)
Q Consensus 2 M~I~VKtl~------g~~~~ieV~~~~TV~~LK~kI~~~~g~------~----~ip~~~qkLi~~GkiL~D~~tL~d~gI 65 (300)
|+|+|+.+. |...++++ ...||.+|.+.+..++.. + .--.....+..+|+...+..-+ ++-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 677887553 33334665 457999999999877531 0 0001135677788877643222 4568
Q ss_pred CCCcEEEEE
Q 022228 66 AENSFVVIM 74 (300)
Q Consensus 66 ~~g~~I~v~ 74 (300)
++||.|.++
T Consensus 79 ~~gDeV~i~ 87 (93)
T 3dwg_C 79 ADGDSVTIL 87 (93)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999886
No 193
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=89.42 E-value=1.1 Score=33.60 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=51.9
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEecC
Q 022228 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k~ 78 (300)
-.+|-..++..||+.++.+.+ +.-+.-.+...+..|+++++|.|-+|+-...|.+.+--+
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 456667899999999999999 778888888899889999999999999888888877643
No 194
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=89.40 E-value=1.4 Score=35.48 Aligned_cols=60 Identities=25% Similarity=0.261 Sum_probs=41.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHH----hCCCCCC----CCCeEEEe-C---CeecCC----------C----Cchhhccc
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETV----QGSDVYP----AAQQMLIY-Q---GKVLKD----------D----TTLEENKV 65 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~----~g~~~ip----~~~qkLi~-~---GkiL~D----------~----~tL~d~gI 65 (300)
..+.+.|-..|||.++|+||-.. .+ +| ++.+.|-| . |++|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 46788888999999999998643 35 43 34455544 1 233332 1 36788999
Q ss_pred CCCcEEEEE
Q 022228 66 AENSFVVIM 74 (300)
Q Consensus 66 ~~g~~I~v~ 74 (300)
.+|.+|-++
T Consensus 116 ~Dgatlal~ 124 (126)
T 3kuz_A 116 SNGSTIKVF 124 (126)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEe
Confidence 999999765
No 195
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=88.73 E-value=1.7 Score=43.46 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=57.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ---G--KVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~---G--kiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
|.|.|..++| ++.|.|+.+.|+.+|-..|+...|. ...+.+-|.|. | ..|+.+++|.+.+++.+..+.+..+
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL--~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGL--REVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTC--CCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCC--CCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 6788999998 7889999999999999999999992 12345666652 2 4578888999887777776666666
Q ss_pred cCC
Q 022228 77 KNK 79 (300)
Q Consensus 77 k~~ 79 (300)
++-
T Consensus 82 vkf 84 (575)
T 2i1j_A 82 AKF 84 (575)
T ss_dssp ESS
T ss_pred EEE
Confidence 544
No 196
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=88.30 E-value=2 Score=43.31 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=45.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CchhhcccCCC
Q 022228 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY----QGK-VLKDD-------------TTLEENKVAEN 68 (300)
Q Consensus 13 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip------~~~qkLi~----~Gk-iL~D~-------------~tL~d~gI~~g 68 (300)
.+.+.|-..|||.++|+||-+..-+. +| ++++.|-+ .|+ +|.|. .||.+|+|.+|
T Consensus 275 ~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 275 GVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 47788889999999999998654322 43 34555654 244 46553 38999999999
Q ss_pred cEEEEEEec
Q 022228 69 SFVVIMLTK 77 (300)
Q Consensus 69 ~~I~v~v~k 77 (300)
.+|.++-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876543
No 197
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=88.25 E-value=2.5 Score=42.47 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=50.3
Q ss_pred EEEEEEcCC---CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC----------
Q 022228 2 MKIFVKTLK---GTSFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY----QGK-VLKDD---------- 57 (300)
Q Consensus 2 M~I~VKtl~---g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip------~~~qkLi~----~Gk-iL~D~---------- 57 (300)
|.|+|-... ...+.+.|-..|||.++|+||-+..-+. +| ++++.|-+ .|+ +|.|.
T Consensus 234 ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~w 312 (627)
T 3ig3_A 234 LTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDW 312 (627)
T ss_dssp EEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTE
T ss_pred EEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCce
Confidence 455554433 2457788889999999999998765322 33 34566654 233 45542
Q ss_pred ---CchhhcccCCCcEEEEEEec
Q 022228 58 ---TTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 58 ---~tL~d~gI~~g~~I~v~v~k 77 (300)
.||.+|+|.+|.+|.++-+.
T Consensus 313 krLNTL~HY~V~Dga~v~L~p~~ 335 (627)
T 3ig3_A 313 KRVNSLAHYQVTDGSLVALVPKQ 335 (627)
T ss_dssp EECCBTTTTTCCTTCEEEEEEC-
T ss_pred eEecchhhcCCCCCceEEEEecc
Confidence 37899999999999886554
No 198
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=87.55 E-value=2.8 Score=39.00 Aligned_cols=73 Identities=23% Similarity=0.233 Sum_probs=55.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---------eecCCCCchhhcccCCCcEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---------KVLKDDTTLEENKVAENSFVV 72 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G---------kiL~D~~tL~d~gI~~g~~I~ 72 (300)
+.+.|..++|....+.|+.+.|+.+|-+.|+.+.|. ...+..-|.+.. +-|+.+++|.+.++.....++
T Consensus 86 ~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 86 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 578899999999999999999999999999999983 234566776632 346667788877766666655
Q ss_pred EEEe
Q 022228 73 IMLT 76 (300)
Q Consensus 73 v~v~ 76 (300)
+.++
T Consensus 164 frvK 167 (371)
T 3ivf_A 164 LRRK 167 (371)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5443
No 199
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=86.63 E-value=0.89 Score=31.83 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=42.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
|+|+| +|+.+ ++....||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLF 60 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEE
Confidence 45544 57654 556778999998876 4 556777888899988542 2234468899999876
No 200
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=86.25 E-value=1.5 Score=30.80 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=40.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
|+|+|...+|+. +++....|+.+|-+.|....+ ....-...+|++.+-+ +-|++|+.|.++..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 556777667876 456678899999888744332 1222334688877554 45667888877654
No 201
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=85.68 E-value=3.3 Score=31.20 Aligned_cols=47 Identities=4% Similarity=0.112 Sum_probs=37.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCCe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAA-QQMLIYQGK 52 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~qkLi~~Gk 52 (300)
|+|++. .+|..+.+.|+++.+..+|.++|.+..+ +... .+.|-|...
T Consensus 7 vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCS
T ss_pred EEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECC
Confidence 666666 4678899999999999999999999988 6544 477778643
No 202
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=85.52 E-value=3.1 Score=37.66 Aligned_cols=70 Identities=10% Similarity=-0.033 Sum_probs=51.1
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCCCchhhcccCCCcEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ---G--KVLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~---G--kiL~D~~tL~d~gI~~g~~I~v 73 (300)
|.+.|..++|....+.|+...|+.+|-+.|+.+.|. ...+..-|.|. | ..|+.++.|.+........+++
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~f 92 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNL--LEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTF 92 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTC--SSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEE
Confidence 678999999999999999999999999999999993 23344566552 3 3578888888764333334444
No 203
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=85.14 E-value=0.78 Score=33.64 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=44.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYP-AAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+| +|+.+.+......||.+|.+.+ + ++ ....-+.++|.++.. ....++-+++||.|-++-
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~l----~---~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSAL----K---VAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHHH----T---CSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHHc----C---CCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEe
Confidence 56655 5776544321568999987753 5 66 667778899999855 345667789999998764
No 204
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=84.81 E-value=0.59 Score=40.99 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.7
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHh
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAA 186 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAa 186 (300)
+..|+++++|| |+++.|+.||+-.
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~~ 193 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRRL 193 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHc
Confidence 67999999999 9999999999643
No 205
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=84.62 E-value=0.8 Score=33.13 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=43.2
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
|+|+| +|+.+.+ ...||.+|.+. .+ ++....-+.++|.++.. ....++-+++||.|-++-
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTE----LD---CTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHH----TT---CCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHH----cC---CCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEc
Confidence 45555 5776554 56899998764 46 77788888899999854 244566789999998874
No 206
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=84.42 E-value=2.5 Score=31.78 Aligned_cols=44 Identities=20% Similarity=0.068 Sum_probs=32.0
Q ss_pred CEEEEEEcCCCcE-EEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEE
Q 022228 1 MMKIFVKTLKGTS-FDVEVK-PEDTVFDVKMKIETVQGSDVYPAAQQML 47 (300)
Q Consensus 1 mM~I~VKtl~g~~-~~ieV~-~~~TV~~LK~kI~~~~g~~~ip~~~qkL 47 (300)
|..|+.|....+. ..|.++ ...+|.+||+.|..+.+ +-..+.-|
T Consensus 6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k---l~~~dfDL 51 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK---LKAADCDL 51 (86)
T ss_dssp BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT---CCTTTEEE
T ss_pred eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC---CCCCcccE
Confidence 5678888776654 447777 67899999999998887 43344544
No 207
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=83.72 E-value=11 Score=28.07 Aligned_cols=73 Identities=21% Similarity=0.146 Sum_probs=47.9
Q ss_pred CEEEEEEcCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCC-CC-CCCCeE---EEe-CCeecCCCCchhhcccCCCcEEEE
Q 022228 1 MMKIFVKTLKGTSFDVEVK-PEDTVFDVKMKIETVQGSD-VY-PAAQQM---LIY-QGKVLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~-~~~TV~~LK~kI~~~~g~~-~i-p~~~qk---Li~-~GkiL~D~~tL~d~gI~~g~~I~v 73 (300)
.|+|+|+. .+..+.|-+. ...||..|-++--.++-+. .. +..... |-+ .|-+|+.+..|.+. +.++++|+-
T Consensus 2 ~MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A 79 (85)
T 2ns5_A 2 EFKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVA 79 (85)
T ss_dssp CEEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEE
T ss_pred ccEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEE
Confidence 48999995 5677788875 4569999877654443210 02 122222 224 78899999999997 678888876
Q ss_pred EE
Q 022228 74 ML 75 (300)
Q Consensus 74 ~v 75 (300)
+.
T Consensus 80 ~~ 81 (85)
T 2ns5_A 80 VF 81 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 208
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=83.37 E-value=0.92 Score=31.89 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 022228 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAA 186 (300)
Q Consensus 156 g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAa 186 (300)
+...+++|.-|+.+| |.+.++.+|++..
T Consensus 14 ~~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 14 SEAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 345578999999999 9999999999876
No 209
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=82.94 E-value=2.8 Score=31.23 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=34.3
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 160 e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
..-+.+|-+.=|.+.++.+.+.|.-.+-+|++||+.|+|+.
T Consensus 35 ~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 44567777765678999999999888999999999999964
No 210
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=82.84 E-value=0.46 Score=32.71 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=31.2
Q ss_pred CChHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 157 NNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 157 ~~~e~~I~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
.+.++.|++|.+| . ++++=++.-|++--+|.|-+|+.||.
T Consensus 10 ~e~~~~~~~L~~MFP~---lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFPD---MDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHSTT---SCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHccc---CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3568899999999 5 89999999999999999999999973
No 211
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=81.48 E-value=2 Score=32.86 Aligned_cols=70 Identities=10% Similarity=-0.050 Sum_probs=47.4
Q ss_pred CEEEEEEcC-C--CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 1 MMKIFVKTL-K--GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 1 mM~I~VKtl-~--g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
||+|.|..- . +..+.+++....||.++-+...-......+.....++-.+|++.. .+.-+++||.|-++-
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 467777543 2 335667888999999998876542221014455678888888887 444588899998763
No 212
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=81.43 E-value=3.1 Score=29.53 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=39.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQ--MLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~q--kLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
+...+++....||.+|.+.+...... .... .+..+|+....+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35667777778999999998876420 1233 778899988753 568899998876
No 213
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=81.10 E-value=5.9 Score=30.49 Aligned_cols=73 Identities=19% Similarity=0.066 Sum_probs=50.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE------eCCeecCCCCchhhc----ccCCCcEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI------YQGKVLKDDTTLEEN----KVAENSFV 71 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi------~~GkiL~D~~tL~d~----gI~~g~~I 71 (300)
+.|+|-..+|....|.|+..+|+.++-+++..+.++. . ...--|+ +--+.|+|...|-+. .+.....+
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~-~-~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~ 87 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL-S-DETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRF 87 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC-C-CCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEE
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC-C-CCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEE
Confidence 3466667899999999999999999999999998842 1 2222232 134788998776555 45556666
Q ss_pred EEEEe
Q 022228 72 VIMLT 76 (300)
Q Consensus 72 ~v~v~ 76 (300)
++..+
T Consensus 88 ~F~kr 92 (100)
T 1wgr_A 88 VFRKN 92 (100)
T ss_dssp EECSC
T ss_pred EEecc
Confidence 55433
No 214
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=81.08 E-value=0.33 Score=38.20 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=41.1
Q ss_pred EEEEEEcCC------CcEEEEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCC--e------ecCCCCch--
Q 022228 2 MKIFVKTLK------GTSFDVEVKP----EDTVFDVKMKIETVQGSDVYPAAQQMLI-YQG--K------VLKDDTTL-- 60 (300)
Q Consensus 2 M~I~VKtl~------g~~~~ieV~~----~~TV~~LK~kI~~~~g~~~ip~~~qkLi-~~G--k------iL~D~~tL-- 60 (300)
|+|+||... |+..++++.. ..||.+|-..|.+... ..+-+|+ -+| + +|-+++.+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 677887654 3555677763 2499999888877743 2222332 123 1 33333333
Q ss_pred ---hhcccCCCcEEEEEE
Q 022228 61 ---EENKVAENSFVVIML 75 (300)
Q Consensus 61 ---~d~gI~~g~~I~v~v 75 (300)
.+|-+++||.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 346799999987753
No 215
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=80.03 E-value=2.5 Score=36.56 Aligned_cols=37 Identities=30% Similarity=0.268 Sum_probs=33.1
Q ss_pred HHHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 160 EGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 160 e~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
-.+|.+|-++ | ..=-+|..||..+.+|.|.|+|||--
T Consensus 4 a~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 4 MELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3578999988 7 88899999999999999999999963
No 216
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=79.35 E-value=2.1 Score=39.25 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 161 GAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 161 ~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
.+|.+|-++ | +.=-+|..||..+.+|.|.|+|||--
T Consensus 6 ~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578889888 7 88899999999999999999999983
No 217
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=79.04 E-value=8.5 Score=35.39 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=42.9
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eec-CCCCchhhcccCC
Q 022228 10 KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG-KVL-KDDTTLEENKVAE 67 (300)
Q Consensus 10 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G-kiL-~D~~tL~d~gI~~ 67 (300)
.-....+.+.+..|+.+||++|++.++ ++++.|.|+|.+ +.. +.......|.-..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~ 376 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTT 376 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCCCC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCCCC
Confidence 344567889999999999999999999 999999999998 444 3445566665433
No 218
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=78.54 E-value=4 Score=31.31 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-----------CeEEEeCC-eecCC------CCchhhcccCCCcEEEEE
Q 022228 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAA-----------QQMLIYQG-KVLKD------DTTLEENKVAENSFVVIM 74 (300)
Q Consensus 13 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-----------~qkLi~~G-kiL~D------~~tL~d~gI~~g~~I~v~ 74 (300)
...|+|++++|+.+|-+.|.+... +.-. ...|+..+ ..|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 346899999999999999998533 2122 22333333 23322 467999999999998873
No 219
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=78.53 E-value=4.4 Score=26.03 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=32.4
Q ss_pred hHHHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 022228 159 LEGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (300)
Q Consensus 159 ~e~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl 198 (300)
.++.|.+.++. | -+++.++.-|..+..|.++||...+
T Consensus 5 ~~~~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG---AEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56789999997 6 7999999999999999999997554
No 220
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=78.48 E-value=2.7 Score=29.10 Aligned_cols=56 Identities=11% Similarity=0.186 Sum_probs=39.9
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEE
Q 022228 9 LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 9 l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
++|+.+. + ...||.+|.+.+ + ++.....+..+|+++..+ .-.+.-+++||.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 4677654 4 568999998876 4 556677788899988543 22344688999998873
No 221
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=77.64 E-value=7.3 Score=31.30 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=39.9
Q ss_pred EEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeec-----CC--CCchhhcccCCCcEEEEEE
Q 022228 15 DVEVKP----EDTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVL-----KD--DTTLEENKVAENSFVVIML 75 (300)
Q Consensus 15 ~ieV~~----~~TV~~LK~kI~~~~g~~~ip~~~qkLi~--~GkiL-----~D--~~tL~d~gI~~g~~I~v~v 75 (300)
.|.|+. ..|+.+|-+.|..+.| +. +.+.++- ..++| +| +++|+++||+.|++|.|+=
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 345553 4699998888988888 53 3555442 23444 23 4799999999999998874
No 222
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=77.43 E-value=2.7 Score=32.54 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=31.7
Q ss_pred HHHHHHHHh-ccCCCCCHHHHHHHHHHhcCChHHHHHHH
Q 022228 160 EGAIQQILD-MGGGTWDRDTVVRALRAAYNNPERAVEYL 197 (300)
Q Consensus 160 e~~I~~i~e-MG~~~f~r~qv~~ALrAafnNpdrAvEyL 197 (300)
++.|.-+|+ +| -+|+++++||+.+.||.=.|+-||
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 567888887 68 999999999999999999999887
No 223
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=76.47 E-value=2.2 Score=35.60 Aligned_cols=29 Identities=24% Similarity=0.158 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 171 GGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 171 ~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
+|++.+.++.+||+.+-+|.++||.+++.
T Consensus 72 ~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~ 100 (162)
T 4dbg_B 72 LGAFSCQEARRAWLDRHGNLDEAVEECVR 100 (162)
T ss_dssp GCCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHccCChHHHHHHHHH
Confidence 68899999999999999999999988763
No 224
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=76.07 E-value=10 Score=26.87 Aligned_cols=57 Identities=7% Similarity=0.077 Sum_probs=37.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 12 TSFDVEVKPEDTVFDVKMKIETVQGS--DVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 12 ~~~~ieV~~~~TV~~LK~kI~~~~g~--~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
..+.++ ....||.+|.+.+...... ..+......+..+|+.... +.-+++||.|.++
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 355566 5677999999998754210 0011234567889998853 4568899999886
No 225
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.07 E-value=7.1 Score=27.11 Aligned_cols=39 Identities=33% Similarity=0.363 Sum_probs=33.4
Q ss_pred ChHHHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 158 NLEGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 158 ~~e~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
..++.|++.|++ | -+++.++.-|.++-.|.++||...+.
T Consensus 14 ~~~e~i~qF~~iTg---~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 14 ALKGLIQQFTTITG---ASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHTC---CCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 446789999997 6 77999999999999999999986654
No 226
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=70.91 E-value=28 Score=25.76 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=49.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCCC---CCCCeEEEeCC--eecCCCCchhhcccCCCcEEEEEEe
Q 022228 14 FDVEVKPEDTVFDVKMKIETVQ-GSDVY---PAAQQMLIYQG--KVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 14 ~~ieV~~~~TV~~LK~kI~~~~-g~~~i---p~~~qkLi~~G--kiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
..+.|+.++|+.++-++++-.. |.. + |-.-.+..++| +.|..+.|+.+-||+.-+.|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrR-V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRR-VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTT-BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4578999999999999997653 432 2 22246777899 9999999999999999999988753
No 227
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=70.14 E-value=4.8 Score=40.95 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=42.6
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCCCCchhhcc
Q 022228 10 KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG-KVLKDDTTLEENK 64 (300)
Q Consensus 10 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G-kiL~D~~tL~d~g 64 (300)
..+.+.+.+.++.|+.+||..|+..+| ++.+.|.|++.+ ..+........|-
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred ccccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhhe
Confidence 455667889999999999999999999 999999999864 5566666777653
No 228
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=69.69 E-value=23 Score=27.37 Aligned_cols=69 Identities=10% Similarity=0.174 Sum_probs=47.6
Q ss_pred EEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCe--ecCCCCchhhcccCCCcEEEEEEe
Q 022228 5 FVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI---YQGK--VLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 5 ~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi---~~Gk--iL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
.|-..+...+++.+..+.|+.+|+..+.++.+ +..+.++|+ ++|. +|+++...-.-.+.-+..|++..+
T Consensus 13 ~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 13 HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 44445667788889999999999999999998 655678776 5774 345544332224455677776554
No 229
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=67.65 E-value=16 Score=26.38 Aligned_cols=58 Identities=7% Similarity=0.163 Sum_probs=36.7
Q ss_pred EEeCCCCCHHHHHHHHHHHhCC--CC--C----CCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 16 VEVKPEDTVFDVKMKIETVQGS--DV--Y----PAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~--~~--i----p~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
++++...||.+|.+.+...... .. + ......+..+|+.+.... -.++-+++||.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 4555568999999999876310 00 0 013456778888775321 134468999998876
No 230
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=67.26 E-value=5 Score=32.19 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=28.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 022228 15 DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY 49 (300)
Q Consensus 15 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~ 49 (300)
.+.|-.+.|+.+||..|++..| +++++|||-+
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhC---CCcccEEEEE
Confidence 5678889999999999999999 9999999954
No 231
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=66.93 E-value=25 Score=26.13 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=49.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCCC--CCCCeEEEeCCee--cCCCCchhhcccCCCcEEEEEE
Q 022228 14 FDVEVKPEDTVFDVKMKIETVQ-GSDVY--PAAQQMLIYQGKV--LKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 14 ~~ieV~~~~TV~~LK~kI~~~~-g~~~i--p~~~qkLi~~Gki--L~D~~tL~d~gI~~g~~I~v~v 75 (300)
..+.||..+|+.++-++++... |.. + .+.-.+..++|.. |.++.|+.+-||+.-+.|-++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrr-v~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRR-VAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTT-BCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-eCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4578999999999999997653 432 2 1346788899988 9999999999999999998875
No 232
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=65.66 E-value=2.1 Score=30.94 Aligned_cols=48 Identities=23% Similarity=0.465 Sum_probs=35.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 15 DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 15 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
.+++....||.+|.+.+ + ++.....+..+|+++..+ +-|++||.|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35666778999998764 4 455667788899998765 567888887654
No 233
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=64.72 E-value=13 Score=25.79 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=37.5
Q ss_pred cCCChHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 155 AGNNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 155 ~g~~~e~~I~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
.-+.++.+|+++.+| - ++++++..-|+-. +|.|.-+|=+|.|
T Consensus 13 ~~sql~~Mve~V~~mFPq---v~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 13 FQGQLNAMAHQIQEMFPQ---VPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHCTT---SCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 345678899999999 6 7999999999987 9999999999988
No 234
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=62.18 E-value=24 Score=25.58 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=43.8
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
.|+|.+.+|+.+ ++....|+.++=..|....+. .-.--..+|+...- ++-+++|+.|-++..+
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~-----~~v~AkVNG~~v~L-----~~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGN-----RMIGAKVDGRIVPI-----DYKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHH-----TEEEEEETTEEECT-----TCBCCTTCBEEEEECC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhc-----ceEEEEECCEEcCC-----CcccCCCCEEEEEccC
Confidence 478888889775 456778999998888766651 22223458877654 3457889999887654
No 235
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.84 E-value=48 Score=24.90 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 22 DTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 22 ~TV~~LK~kI~~~~g~~~ip~~~qkLi~--~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
.+..+|+.|...+.+ ++....+|+. .|.+++|+.-+..+ +.+++.+++.+
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 379999999999988 7655666654 68888877655443 35566666654
No 236
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=61.11 E-value=18 Score=35.32 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=44.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCeEEEeC--C--eecCCCCchhh
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYP--AAQQMLIYQ--G--KVLKDDTTLEE 62 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip--~~~qkLi~~--G--kiL~D~~tL~d 62 (300)
|.+.|..++|....+.|+...|+.+|-+.|+.+.| +. .+..-|.+. + +.|+++..+.|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 67889999999999999999999999999999999 54 345566542 2 23666665544
No 237
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=58.55 E-value=14 Score=29.12 Aligned_cols=54 Identities=6% Similarity=0.090 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---eec--C-CCCchhhcccCCCcEEEEEEec
Q 022228 22 DTVFDVKMKIETVQGSDVYPAAQQMLIYQG---KVL--K-DDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 22 ~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G---kiL--~-D~~tL~d~gI~~g~~I~v~v~k 77 (300)
.+...|+.+|...+.. +......|.|.. -.+ . |+.....+.....+.+-|.+.+
T Consensus 57 ~s~~~L~~kV~~lFp~--L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~~~~lRlyVke 116 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 116 (117)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred CCHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEe
Confidence 4899999999999741 445678888853 222 2 2222222333334577776654
No 238
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=58.23 E-value=13 Score=25.37 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=31.9
Q ss_pred cccccCCChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 151 s~l~~g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
|.++.+..+.+.+.+ |+|+-+.+||+.+.+|..+|.+.| ||.
T Consensus 4 ~~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 4 SYLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp CTTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred HHhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 344555566655443 788999999999999999999988 664
No 239
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.77 E-value=26 Score=24.60 Aligned_cols=43 Identities=21% Similarity=0.112 Sum_probs=35.6
Q ss_pred CChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
.+.++.|++.+++-|. =+.+.++.-|..+-.|.++||...+.+
T Consensus 16 ~~~~e~i~qF~~ITg~-~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 16 QEQTEKLLQFQDLTGI-ESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHHCC-SCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhCC-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3467889999998532 378899999999999999999877765
No 240
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=56.61 E-value=6.3 Score=27.35 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=23.9
Q ss_pred hhhhhCcHHHHHHHHHHHhCCCchHHHHh
Q 022228 265 LDFLRNSPQFQVLRAMVQANPQLFPCFKS 293 (300)
Q Consensus 265 l~~Lr~~pqf~~lR~~vq~nP~~L~~~lq 293 (300)
+..+.++|+|.+.=+-|++||+.+...+.
T Consensus 14 ~~~~m~dP~~~~~lq~i~~NP~~~~~~~~ 42 (62)
T 2lnm_A 14 VAMAFQNPRVQAALMECSENPMNIMKYQN 42 (62)
T ss_dssp HHHHTTSHHHHHHHHHHTTCGGGHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHCHHHHHHHHh
Confidence 44555789999999999999999987654
No 241
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=55.73 E-value=45 Score=32.70 Aligned_cols=69 Identities=16% Similarity=0.054 Sum_probs=47.3
Q ss_pred EEEEEEcCCCc--EEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCeEE--EeCCee---cCCCCchhhcccCCCcEE
Q 022228 2 MKIFVKTLKGT--SFDVEVKPEDTVFDVKMKIETVQGSDVYP---AAQQML--IYQGKV---LKDDTTLEENKVAENSFV 71 (300)
Q Consensus 2 M~I~VKtl~g~--~~~ieV~~~~TV~~LK~kI~~~~g~~~ip---~~~qkL--i~~Gki---L~D~~tL~d~gI~~g~~I 71 (300)
|+|++.....+ .+.+-|..+.||.+|-+.+..+.+ ++ ...+|| +|++|+ +.++.+|..+.=....++
T Consensus 340 ~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ 416 (530)
T 2ylm_A 340 FKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTF 416 (530)
T ss_dssp EEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEE
T ss_pred EEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceE
Confidence 66766644333 466677889999999999998887 54 567777 488865 578888886532224455
Q ss_pred EE
Q 022228 72 VI 73 (300)
Q Consensus 72 ~v 73 (300)
.+
T Consensus 417 ri 418 (530)
T 2ylm_A 417 RI 418 (530)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 242
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=54.78 E-value=70 Score=24.50 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=54.4
Q ss_pred EEEEEEcCCC---cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--C-eecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKG---TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ--G-KVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g---~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~--G-kiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
++|+|..++. ..+++.|..+.-|+-|.-+|-++.... -.-+.--|-.- . -.|+-..+|..|||.-+..+++.-
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-QDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-SCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-cchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 5788888654 568899999999999999998777511 22344444432 2 356778899999999999998864
Q ss_pred e
Q 022228 76 T 76 (300)
Q Consensus 76 ~ 76 (300)
.
T Consensus 99 ~ 99 (102)
T 2kmc_A 99 Q 99 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 243
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=54.13 E-value=66 Score=24.02 Aligned_cols=59 Identities=5% Similarity=0.005 Sum_probs=42.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCchhhc--ccCCCcEEEEEEec
Q 022228 14 FDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVL-KDDTTLEEN--KVAENSFVVIMLTK 77 (300)
Q Consensus 14 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL-~D~~tL~d~--gI~~g~~I~v~v~k 77 (300)
-.+-|..+.||..|...|.++.+ + +..-|..+...+ ..+.+++++ .-+++++|+|.-+.
T Consensus 25 ~KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 25 SVCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYCA 86 (91)
T ss_dssp -EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEEC
T ss_pred cEEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEeC
Confidence 34567889999999999999988 5 566665677654 556677665 23467888887653
No 244
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=53.60 E-value=44 Score=26.44 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=43.7
Q ss_pred EEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC------CeEEE---eCCe--ecCCCCchhhcccCCCcEEEE
Q 022228 5 FVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAA------QQMLI---YQGK--VLKDDTTLEENKVAENSFVVI 73 (300)
Q Consensus 5 ~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~------~qkLi---~~Gk--iL~D~~tL~d~gI~~g~~I~v 73 (300)
.|-..+...+.+.+..+.|+.+|+..+.++.+ +..+ .++|+ ++|. +|+++...-.-.+.-+..|++
T Consensus 13 ~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfv 89 (120)
T 2dhz_A 13 RVYMPDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFA 89 (120)
T ss_dssp CEECTTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEE
T ss_pred EEEeccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEE
Confidence 34444566677888889999999999999988 4333 67775 5774 455544322223444566766
Q ss_pred EE
Q 022228 74 ML 75 (300)
Q Consensus 74 ~v 75 (300)
..
T Consensus 90 c~ 91 (120)
T 2dhz_A 90 CT 91 (120)
T ss_dssp EC
T ss_pred ee
Confidence 53
No 245
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=52.54 E-value=59 Score=25.94 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=41.1
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeec-CCCCchhhc--cc-CCCcEEEEEEe
Q 022228 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI-YQGKVL-KDDTTLEEN--KV-AENSFVVIMLT 76 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi-~~GkiL-~D~~tL~d~--gI-~~g~~I~v~v~ 76 (300)
+-|..+.||.+|...|..+.+ +.+++--.+ |.++.+ .-+.+++++ .- .++.+|+|..+
T Consensus 57 flVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 356778899999999999988 666665555 755544 566777766 22 34678887765
No 246
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=52.12 E-value=80 Score=24.51 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=40.6
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhc--cc-CCCcEEEEEEec
Q 022228 17 EVKPEDTVFDVKMKIETVQGSDVYPAAQ-QMLIYQGKVLKDDTTLEEN--KV-AENSFVVIMLTK 77 (300)
Q Consensus 17 eV~~~~TV~~LK~kI~~~~g~~~ip~~~-qkLi~~GkiL~D~~tL~d~--gI-~~g~~I~v~v~k 77 (300)
-|..+.||.+|...|....+ +.+++ +-|+.++....-+.++.++ .- .++.+|+|..+.
T Consensus 50 lVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 50 LVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 45667899999999999888 55555 4555566555667777776 22 347788888764
No 247
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=51.24 E-value=14 Score=27.95 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=23.7
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHH
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVK 28 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK 28 (300)
|++|+|...+|+.+.|++....||.+.-
T Consensus 6 m~~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 6 KITVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHH
Confidence 5789998788998899999999988754
No 248
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=50.12 E-value=48 Score=24.71 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=42.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeec-CCCCchhhc--ccCCCcEEEEEEec
Q 022228 14 FDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQ-MLIYQGKVL-KDDTTLEEN--KVAENSFVVIMLTK 77 (300)
Q Consensus 14 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~q-kLi~~GkiL-~D~~tL~d~--gI~~g~~I~v~v~k 77 (300)
-.+-|..+.||..|...|.++.+ +.+++- -|..+...+ ..+.+++++ .-+++.+|+|.-+.
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys~ 86 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCK 86 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEES
T ss_pred cEEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 34567788999999999999988 656554 444466554 446676655 22467888887654
No 249
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=49.87 E-value=1e+02 Score=25.07 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=44.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC----eEEEe-----------------CCee-cCCCCchhhcccCCCcE
Q 022228 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQ----QMLIY-----------------QGKV-LKDDTTLEENKVAENSF 70 (300)
Q Consensus 13 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~----qkLi~-----------------~Gki-L~D~~tL~d~gI~~g~~ 70 (300)
.+.|-...+.|+.+|-..|.+.... .+... +++|| .|+. -+|++||.+++..-||+
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 4667778999999999988876431 11111 23443 2222 25789999999999999
Q ss_pred EEEEEecC
Q 022228 71 VVIMLTKN 78 (300)
Q Consensus 71 I~v~v~k~ 78 (300)
|.|-+..+
T Consensus 133 idvaI~pP 140 (143)
T 4a6q_A 133 LDIAITPP 140 (143)
T ss_dssp EEEEEECG
T ss_pred EEEEEeCC
Confidence 99988654
No 250
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.58 E-value=36 Score=23.85 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=32.1
Q ss_pred HHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 022228 161 GAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (300)
Q Consensus 161 ~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~ 199 (300)
+.|.+.+++ | =+++.++.-|.++-.|.++||...+.
T Consensus 19 ~~i~qF~~iTg---~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAG---CAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 789999987 6 79999999999999999999987764
No 251
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=49.17 E-value=23 Score=27.09 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=28.2
Q ss_pred EEEEEEcCC-------CcEEEEEeCCCCCHHHHHHHHHHHhC
Q 022228 2 MKIFVKTLK-------GTSFDVEVKPEDTVFDVKMKIETVQG 36 (300)
Q Consensus 2 M~I~VKtl~-------g~~~~ieV~~~~TV~~LK~kI~~~~g 36 (300)
|+|+|..-+ +..+.|-|..+.+..+|..+|..+.+
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 456665432 55789999999999999999999887
No 252
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=49.12 E-value=28 Score=26.74 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHhCCCCCCCC--CeEEE--eCCeecCCCCchhhcccCCCcEEEEEEec
Q 022228 22 DTVFDVKMKIETVQGSDVYPAA--QQMLI--YQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 22 ~TV~~LK~kI~~~~g~~~ip~~--~qkLi--~~GkiL~D~~tL~d~gI~~g~~I~v~v~k 77 (300)
.+..+|+.|...+.+ ++.. ..+|+ ..|.+++|+.-+..+ . .+++.+++.+
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tL--p-~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCL--P-SNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSS--C-SCCEEEEECS
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcC--C-CCCEEEEEcC
Confidence 479999999999999 6542 35554 479999887665543 2 4455555543
No 253
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=48.92 E-value=40 Score=34.03 Aligned_cols=46 Identities=11% Similarity=0.001 Sum_probs=39.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY 49 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~ 49 (300)
|.+.|..++|....+.|+...|+.+|-+.|+.+.|. ...+..-|.|
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 678999999999999999999999999999999983 2345667765
No 254
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=48.63 E-value=81 Score=24.65 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=41.1
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCchhhc---ccCCCcEEEEEEec
Q 022228 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY-QGKVLKDDTTLEEN---KVAENSFVVIMLTK 77 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~-~GkiL~D~~tL~d~---gI~~g~~I~v~v~k 77 (300)
+-|..+.||.+|...|....+ +.+++--.+| ++....-+.+++++ .-.++.+|+|..+.
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 447788999999999999988 6665544444 66555667777765 22356688887654
No 255
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=48.61 E-value=20 Score=27.45 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=26.3
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHh-------cCChHHHHHHHHhC
Q 022228 162 AIQQILDMGGGTWDRDTVVRALRAA-------YNNPERAVEYLYSG 200 (300)
Q Consensus 162 ~I~~i~eMG~~~f~r~qv~~ALrAa-------fnNpdrAvEyLl~G 200 (300)
.|++.++|| |++..|.++++-- |...+.-|.=|+.+
T Consensus 30 vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 789999999 9999999999763 44444444444443
No 256
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.26 E-value=40 Score=23.47 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=36.2
Q ss_pred CChHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 157 NNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 157 ~~~e~~I~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
+.++.+|+++.+| - ++++.+..-|+-. +|.+.-+|=+|.|
T Consensus 11 ~ql~~mv~~V~~mfP~---vp~~~I~~DL~~T-gsVe~TienILeG 52 (61)
T 2ekf_A 11 VQLATLAQRVKEVLPH---VPLGVIQRDLAKT-GCVDLTITNLLEG 52 (61)
T ss_dssp CCHHHHHHHHHHHCSS---SCHHHHHHHHHTS-CCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 4678999999999 6 7999999999876 5999999999999
No 257
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=47.34 E-value=79 Score=24.76 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=42.7
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhc--cc-CCCcEEEEEEec
Q 022228 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQ-QMLIYQGKVLKDDTTLEEN--KV-AENSFVVIMLTK 77 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-qkLi~~GkiL~D~~tL~d~--gI-~~g~~I~v~v~k 77 (300)
+-|..+.||.+|...|....+ +.+++ +-|+.++....-+.+++++ .- .++.+|+|..+.
T Consensus 52 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 356788999999999999988 66665 4455577766777787765 22 346688887654
No 258
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=46.96 E-value=72 Score=25.15 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=46.3
Q ss_pred EEEEeCCCCCHHHHHHHHHH-HhCCC----CCCCCCeEEEeCCeec--CCCCchhhcccCCCcEEEEE
Q 022228 14 FDVEVKPEDTVFDVKMKIET-VQGSD----VYPAAQQMLIYQGKVL--KDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 14 ~~ieV~~~~TV~~LK~kI~~-~~g~~----~ip~~~qkLi~~GkiL--~D~~tL~d~gI~~g~~I~v~ 74 (300)
+.+-|.++.+.++|-+.+-. ..+.+ .+.-+.-.+..+|+.. +.+++|.+.||..++.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 67889999999999887643 23311 1445566788999998 45689999999999988764
No 259
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=46.39 E-value=66 Score=24.69 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=39.4
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhc--cc-CCCcEEEEEEe
Q 022228 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQ-QMLIYQGKVLKDDTTLEEN--KV-AENSFVVIMLT 76 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-qkLi~~GkiL~D~~tL~d~--gI-~~g~~I~v~v~ 76 (300)
+-|..+.||.+|...|....+ +.+++ +-|+.++....-+.+|.++ .. .++.+|+|..+
T Consensus 48 flVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 345567899999999998887 55554 4555566655667777776 22 34678887653
No 260
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=46.33 E-value=54 Score=24.72 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=39.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCchhhc--ccCCCcEEEEEEec
Q 022228 15 DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVL-KDDTTLEEN--KVAENSFVVIMLTK 77 (300)
Q Consensus 15 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL-~D~~tL~d~--gI~~g~~I~v~v~k 77 (300)
.+-|..+.||.+|...|.++.+ +. .+-|+.+...+ ..+.+++++ .-+++++|+|..+.
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~---l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys~ 91 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLH---SD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYAC 91 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHT---CS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEEES
T ss_pred EEEeCCCCcHHHHHHHHHHhcC---Cc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 4566778899999999999988 55 55553344244 556777665 23447788877654
No 261
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=45.46 E-value=42 Score=32.93 Aligned_cols=72 Identities=13% Similarity=0.294 Sum_probs=53.6
Q ss_pred EEEEEEcCC--CcEEE----EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC------CeecC-CCCchhhc--ccC
Q 022228 2 MKIFVKTLK--GTSFD----VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ------GKVLK-DDTTLEEN--KVA 66 (300)
Q Consensus 2 M~I~VKtl~--g~~~~----ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~------GkiL~-D~~tL~d~--gI~ 66 (300)
+-|++|..+ .+++. +-|..+.+|.+|-..|.+..| +|++.--++|. -..|+ .+.|+.++ .|.
T Consensus 131 iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~ 207 (530)
T 2ylm_A 131 VMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELM 207 (530)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCC
T ss_pred EEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhccc
Confidence 456777553 33433 467889999999999999999 88876655664 23467 57799999 999
Q ss_pred CCcEEEEEEe
Q 022228 67 ENSFVVIMLT 76 (300)
Q Consensus 67 ~g~~I~v~v~ 76 (300)
+|+.|++=..
T Consensus 208 ~GdII~fQ~~ 217 (530)
T 2ylm_A 208 DGDIIVFQKD 217 (530)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEEEec
Confidence 9998876543
No 262
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=45.40 E-value=19 Score=27.20 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=23.0
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHH
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVK 28 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK 28 (300)
|++|+|...+|+.+.|++....||.+.-
T Consensus 5 m~~v~~~~~~g~~~~~~~~~g~tlL~aa 32 (109)
T 2y5c_A 5 VVNVVFVDRSGQRIPVSGRVGDNVLHLA 32 (109)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred cEEEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 3578887778999899999999998754
No 263
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.25 E-value=50 Score=22.72 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=36.0
Q ss_pred CChHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 157 NNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 157 ~~~e~~I~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
+..+.+|+++.+| - ++++.+..-|+-.- |.|.-+|=+|.|
T Consensus 11 ~q~~~mv~~V~~mfP~---vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQ---VPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CHHHHHHHHHHHHCCS---SCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 4678999999999 6 79999999998865 999999999998
No 264
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=43.80 E-value=20 Score=28.33 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=24.5
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHH
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKM 29 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~ 29 (300)
|.+|+|.+.+|+...|++....||.+.-.
T Consensus 21 M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~ 49 (126)
T 3hui_A 21 MAKINFVDHTGETRTVEVEEGATVMEAAI 49 (126)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHH
T ss_pred ceEEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 57899998899888999999999988543
No 265
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=42.38 E-value=23 Score=29.29 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=23.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHH
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKM 29 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~ 29 (300)
|+|+|+ ++|+.+.++++++.|+.++-.
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 678776 789999999999999988754
No 266
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=42.33 E-value=69 Score=26.46 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=37.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCC---------CCCeEEEeCCeecCCCCchhhcccCCCcEEEEE
Q 022228 15 DVEVKPEDTVFDVKMKIETVQGSDVYP---------AAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 15 ~ieV~~~~TV~~LK~kI~~~~g~~~ip---------~~~qkLi~~GkiL~D~~tL~d~gI~~g~~I~v~ 74 (300)
.++++. .||.+|.+.+...+.. +. .....+..||+.+....- .++-|++||.|.|+
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEE
Confidence 345655 8999999999876320 10 234567789988765322 34568999998886
No 267
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=40.82 E-value=87 Score=24.79 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=41.4
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeecCCCCchhhcc--c-CCCcEEEEEEec
Q 022228 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQ-MLIYQGKVLKDDTTLEENK--V-AENSFVVIMLTK 77 (300)
Q Consensus 16 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~q-kLi~~GkiL~D~~tL~d~g--I-~~g~~I~v~v~k 77 (300)
+-|..+.||.+|...|..... +.+++- -|+.++....-+.+++++- - .++.+|+|..+.
T Consensus 57 flVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 456788999999999999988 666664 4444665556677877662 2 356688887654
No 268
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=40.72 E-value=27 Score=29.07 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=23.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHH
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMK 30 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~k 30 (300)
|+|+|+ ++|+.+.++++++.||.++-..
T Consensus 4 ~~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 4 AHIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 677776 6899999999999999987554
No 269
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=40.58 E-value=13 Score=26.70 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.7
Q ss_pred hhhhhCcHHHHHHHHHHHhCCCchHHHHh
Q 022228 265 LDFLRNSPQFQVLRAMVQANPQLFPCFKS 293 (300)
Q Consensus 265 l~~Lr~~pqf~~lR~~vq~nP~~L~~~lq 293 (300)
+..+.++|+|+++=+-+++||..+..++.
T Consensus 22 i~~im~DP~~~~~lq~~~~NP~~~~k~~~ 50 (71)
T 2llw_A 22 VAAIMQDPVMQSILQQAQQNPAALQEHMK 50 (71)
T ss_dssp HHHHHTCTHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHCHHHHHHHHh
Confidence 44577899999999999999999987765
No 270
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=40.47 E-value=1e+02 Score=27.67 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=47.2
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--e-C---CeecCCCCchhhc----ccCCCcEEE
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--Y-Q---GKVLKDDTTLEEN----KVAENSFVV 72 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~-~---GkiL~D~~tL~d~----gI~~g~~I~ 72 (300)
.|+|-..+|....|.|++++|+.+|-+.+..+.++ ...+.--|+ | . -+.|+|...|-+. .......++
T Consensus 33 ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~--~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~ 110 (281)
T 4gmv_A 33 VIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC--GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLI 110 (281)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC--CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEE
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC--CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEE
Confidence 35555668889999999999999999988888773 222333332 2 1 3778888877664 344555555
Q ss_pred EE
Q 022228 73 IM 74 (300)
Q Consensus 73 v~ 74 (300)
+.
T Consensus 111 f~ 112 (281)
T 4gmv_A 111 FM 112 (281)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 271
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=40.46 E-value=26 Score=29.08 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=22.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHH
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMK 30 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~k 30 (300)
|.|+|. ++|+.+.++++++.||.++-..
T Consensus 4 ~~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 4 KIITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 567665 6899999999999999987554
No 272
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=40.13 E-value=73 Score=23.14 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=32.1
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
.+..+++|-|.- |--|-.-...||+|+.+|...||-+|..-
T Consensus 24 ~q~lLnQLrEIT-GiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREIT-GINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHS-CCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 355789999983 22366667789999999999999999743
No 273
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=39.56 E-value=16 Score=31.68 Aligned_cols=25 Identities=8% Similarity=0.248 Sum_probs=23.1
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAA 186 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAa 186 (300)
.++++.-|+.+| |.+.++.+|++..
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~ 188 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 478999999999 9999999999886
No 274
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=39.32 E-value=42 Score=21.81 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=29.8
Q ss_pred ChHHHHHHHHhc-cCCCCC-HHHHHHHHHHhcCChHHHHH
Q 022228 158 NLEGAIQQILDM-GGGTWD-RDTVVRALRAAYNNPERAVE 195 (300)
Q Consensus 158 ~~e~~I~~i~eM-G~~~f~-r~qv~~ALrAafnNpdrAvE 195 (300)
+.++.|.+.+++ | -+ .++++.=|.++..|.+.||.
T Consensus 4 d~de~ia~F~~iTG---~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 4 DREMILADFQACTG---IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp CHHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred cHHHHHHHHHHHHC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 568899999998 6 66 49999999999999999873
No 275
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=37.99 E-value=46 Score=25.67 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=31.8
Q ss_pred HHHHHHH-hccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 022228 161 GAIQQIL-DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201 (300)
Q Consensus 161 ~~I~~i~-eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GI 201 (300)
+.|.+|| +.. -+--.|.+||--..++..+|..||++|+
T Consensus 15 ~~i~~lMeef~---~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 15 KIIRQLMEKFN---LDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHh---hhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 3455554 456 7999999999999999999999999985
No 276
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=37.87 E-value=18 Score=31.10 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=23.1
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAA 186 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAa 186 (300)
.++++.-|+.+| |.+.++.+|++..
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 478999999999 9999999999986
No 277
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=37.43 E-value=14 Score=25.15 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 174 WDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 174 f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
|+|+-+.+||+.+ +|..+|.+.| ||.
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L--GIs 46 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL--GVS 46 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT--TSC
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh--CCC
Confidence 7899999999999 9999999987 664
No 278
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=36.90 E-value=13 Score=24.42 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCchHHHHhcc
Q 022228 272 PQFQVLRAMVQANPQLFPCFKSWG 295 (300)
Q Consensus 272 pqf~~lR~~vq~nP~~L~~~lq~~ 295 (300)
.|=+|+-.++++||+|+-.++.+-
T Consensus 17 ~qqqqvl~ILksnPqLMAAfIkQR 40 (47)
T 1zoq_C 17 QQQQQVLNILKSNPQLMAAFIKQR 40 (47)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHH
Confidence 356788888999999998887653
No 279
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=36.52 E-value=34 Score=28.56 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=36.1
Q ss_pred CChHHHHHHH-HhccCCCCCH---HHHHHHHHHhcCC-hHHHHHHHHhC--CCCc
Q 022228 157 NNLEGAIQQI-LDMGGGTWDR---DTVVRALRAAYNN-PERAVEYLYSG--IPEQ 204 (300)
Q Consensus 157 ~~~e~~I~~i-~eMG~~~f~r---~qv~~ALrAafnN-pdrAvEyLl~G--IP~~ 204 (300)
+..|..|+.| .|-| |.+ ++|+.||+..-.+ |..=++||..| ||++
T Consensus 61 s~~~~Lv~~l~~e~G---i~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N 112 (168)
T 3cz6_A 61 SQAEKLVQDLCDETG---IRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPN 112 (168)
T ss_dssp TCHHHHHHHHHHHHC---BCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTT
T ss_pred hhHHHHHHHHHHHhC---cccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCC
Confidence 3557789998 6789 976 5777889888888 88888999998 7755
No 280
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=35.65 E-value=98 Score=21.07 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=36.0
Q ss_pred ChHHHHHHHHhc-cCCCCCHHHHHHHHHHhcCChHHHHHHHHh----C-CCCc
Q 022228 158 NLEGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS----G-IPEQ 204 (300)
Q Consensus 158 ~~e~~I~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyLl~----G-IP~~ 204 (300)
+.+++|..+... | -..+-+..+|.-+--|.+||+.-... | ||++
T Consensus 6 ~q~~mv~~~s~~Tg---mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 6 EQQEMLQAFSTQSG---MNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 457888888876 7 88999999999999999999965432 4 9975
No 281
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=35.43 E-value=21 Score=26.15 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 174 WDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 174 f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
|+|+-+++||+.+-+|..+|.+.| ||.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~L--GIS 67 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRL--NMH 67 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH--TSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh--CCC
Confidence 788889999999999999999988 554
No 282
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=35.12 E-value=41 Score=25.21 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.2
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHH
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMK 30 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~k 30 (300)
+|+|...+|+.+.|++....||.+.-.+
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 6899999999999999999999886543
No 283
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=34.67 E-value=77 Score=28.06 Aligned_cols=58 Identities=21% Similarity=0.116 Sum_probs=37.5
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eC----CeecCCCCchhhc
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQ----GKVLKDDTTLEEN 63 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi--~~----GkiL~D~~tL~d~ 63 (300)
|+|-.-+|....|.|+++.|+.+|-..+..+.++ .....--|+ +. -|.|+|...+-+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~--~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHS--VDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC---------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCC--CCCCCEEEEEECCCcccccccccchhHHHH
Confidence 5555668889999999999999999888877652 222222222 11 3778888766544
No 284
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=34.27 E-value=1e+02 Score=20.54 Aligned_cols=38 Identities=29% Similarity=0.288 Sum_probs=32.1
Q ss_pred HHHHHHHHh--ccCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 160 EGAIQQILD--MGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 160 e~~I~~i~e--MG~~~f~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
|+.|.+... -| -+|+-++|-|+-..=|.+-||.-|++-
T Consensus 10 e~li~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 10 EELISQAQVVLQG---KSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHHSTT---CCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 667777554 37 999999999999999999999999863
No 285
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=34.14 E-value=36 Score=29.55 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=39.7
Q ss_pred cccccCCChHHHHHHHHhccCCCC-CHHHHHHHHHHhcCChHHHHHHHH
Q 022228 151 SNLVAGNNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLY 198 (300)
Q Consensus 151 s~l~~g~~~e~~I~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyLl 198 (300)
.+|+ |..+++.+..|.+.| - +++++..||+++.--...|+++|+
T Consensus 159 nsFi-g~ar~qLl~aL~~l~---ll~~~~~~~a~~~~~~~~~~~~~~~~ 203 (214)
T 3kvh_A 159 NAFV-STAKCQLLFALKVLN---MMPEEKLVEALAAATEKQKKALEKLL 203 (214)
T ss_dssp SCBC-TTHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhH-HHHHHHHHHHHHHcC---CCCHHHHHHHHHhccCcchhHHHhhC
Confidence 3444 889999999999999 6 999999999999999999999995
No 286
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=33.41 E-value=38 Score=27.95 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHH
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMK 30 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~k 30 (300)
|.|+|+ ++|+.+.++++++.||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 677776 6899999999999999887654
No 287
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=33.02 E-value=59 Score=33.18 Aligned_cols=61 Identities=10% Similarity=0.176 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC--------CeEEEeCCe--ec------CCCCchhhcccCCCcEEEEE
Q 022228 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAA--------QQMLIYQGK--VL------KDDTTLEENKVAENSFVVIM 74 (300)
Q Consensus 13 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~--------~qkLi~~Gk--iL------~D~~tL~d~gI~~g~~I~v~ 74 (300)
...+.++.+.|+.+|-+.|+.+.... +... ..+++|... .| .-+++|+++||++|+.|.|.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 35577888889999988888853310 2111 246666532 11 12578999999999998874
No 288
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=32.83 E-value=62 Score=23.86 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=24.1
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHH
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMK 30 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~k 30 (300)
+++|+|.+.+|+...|++....||.+.-..
T Consensus 3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 3 GIKVFFVTPEGREIMIEGNEGDSILDLAHA 32 (103)
T ss_dssp CEEEEEECTTCCEEEEEECTTCBHHHHHHH
T ss_pred ceEEEEEeCCCCEEEEEECCCCHHHHHHHH
Confidence 367888878898889999999999886543
No 289
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=32.58 E-value=1.1e+02 Score=23.34 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=35.4
Q ss_pred EEEEc-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee
Q 022228 4 IFVKT-LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKV 53 (300)
Q Consensus 4 I~VKt-l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~Gki 53 (300)
|.||. ..|.++.|.|....+.++|..|+...+| ..+-|.|-...
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG------q~ldL~y~n~E 53 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG------QSMDLHYTNNE 53 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS------SCEEEEECSSS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC------CeeeEEEecce
Confidence 44443 3788999999999999999999999999 46777776543
No 290
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=32.35 E-value=1e+02 Score=23.05 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=34.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeE-EEeCCeec
Q 022228 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQM-LIYQGKVL 54 (300)
Q Consensus 11 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qk-Li~~GkiL 54 (300)
...+.|.|+...|=-++|+.|+..++ +.+.... |+..||.=
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCcee
Confidence 36899999999999999999999999 7777764 46777643
No 291
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=32.28 E-value=39 Score=24.77 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHH
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMK 30 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~k 30 (300)
|++|+|...++....|++....||.+.-..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 4 VHTITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred cEEEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 357888766777888999999999887544
No 292
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=31.44 E-value=31 Score=31.86 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=32.2
Q ss_pred CChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHH----HHHH-HhCCCC
Q 022228 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERA----VEYL-YSGIPE 203 (300)
Q Consensus 157 ~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrA----vEyL-l~GIP~ 203 (300)
.++|..|..|.+|| |+++++.++|.....=..+- |.|| .-|++.
T Consensus 44 ~~~e~~l~~L~d~G---fs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~ 92 (335)
T 4fp9_B 44 LELERVMSSLLDMG---FSNAHINELLSVRRGASLQQLLDIISEFILLGLNP 92 (335)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCH
T ss_pred ccHHHHHHHHHHCC---CCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCH
Confidence 36799999999999 99999999999865533332 3333 447664
No 293
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=31.40 E-value=16 Score=25.93 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.5
Q ss_pred hhCcHHHHHHHHHHHhCCCchHH-HHh
Q 022228 268 LRNSPQFQVLRAMVQANPQLFPC-FKS 293 (300)
Q Consensus 268 Lr~~pqf~~lR~~vq~nP~~L~~-~lq 293 (300)
+...|+|.++=+-|++||+.+.. .++
T Consensus 28 ~~~DP~~~~~lq~i~~NP~~i~~~~~~ 54 (71)
T 2llv_A 28 MMKDPQLVAKLIGYKQNPQAIGQDLFT 54 (71)
T ss_dssp HHHSCTHHHHHHHHHHSCTTHHHHTTT
T ss_pred HhcCHHHHHHHHHHHHCHHHHHHHHhh
Confidence 44678899999999999999987 554
No 294
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=27.76 E-value=69 Score=23.07 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHH
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMK 30 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~k 30 (300)
+.+|+|+..+| ...|++....||.+.-..
T Consensus 1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 29 (95)
T 1frr_A 1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEE 29 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTCCHHHHHHH
T ss_pred CeEEEEEeCCC-cEEEEeCCCCcHHHHHHH
Confidence 46788876777 677889999999886543
No 295
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=27.63 E-value=59 Score=25.36 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=34.5
Q ss_pred cccccCCChHHHHHHHHhccCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 022228 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203 (300)
Q Consensus 151 s~l~~g~~~e~~I~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyLl~GIP~ 203 (300)
..|+-|...++...-|+++. .--=+.|+.||| +||..|++.
T Consensus 23 ~~LipG~vsee~F~LLlelS--~IrSekII~ALr----------dyLV~G~sr 63 (111)
T 3m8j_A 23 SALSSGSMSEEQFFLLIGIS--SIHSDRVILAMK----------DYLVSGHSR 63 (111)
T ss_dssp HCCCTTCSCHHHHHHHHHHS--CCCCHHHHHHHH----------HHHTTCCCH
T ss_pred CccCCCCCCHHHHHHHHHHC--CCCCHHHHHHHH----------HHHHcCCcH
Confidence 45778889999999999994 167789999999 699999875
No 296
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=27.29 E-value=34 Score=25.80 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=22.7
Q ss_pred EEcCCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 022228 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQ 35 (300)
Q Consensus 6 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~ 35 (300)
|...+|-+|.++|..+.-+..-|+.|+..+
T Consensus 40 isf~ngatfqvevpgsqh~~sqk~~~ermk 69 (113)
T 1ltr_D 40 ITFKSGATFQVEVPGSQHIDSQKKAIERMK 69 (113)
T ss_dssp EECTTSCEEEECCCSTTSCSHHHHHHHHHH
T ss_pred EEecCCcEEEEecCcchhhhhhhhHHHHHH
Confidence 444579999999998887777777776543
No 297
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=26.57 E-value=42 Score=27.42 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHhCCCCCCC--CCeEEE--eCCeecCCCCchhhcccCCCcEEEEEEe
Q 022228 22 DTVFDVKMKIETVQGSDVYPA--AQQMLI--YQGKVLKDDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 22 ~TV~~LK~kI~~~~g~~~ip~--~~qkLi--~~GkiL~D~~tL~d~gI~~g~~I~v~v~ 76 (300)
.+..+|+.|...+.+ ++. ...+|+ ..|.+++|+.-+..+ .+ +++.+++.
T Consensus 82 ~SL~EL~~K~~~kL~---l~~~~~~~~LvLeeDGTeVddEeYF~tL--p~-nT~LmvL~ 134 (145)
T 1ibx_B 82 SCLEDLRSKACDILA---IDKSLTPVTLVLAEDGTIVDDDDYFLCL--PS-NTKFVALA 134 (145)
T ss_dssp SSHHHHHHHHHHHHT---CSCTTSCCEEEETTTCCBCSSHHHHHHS--CS-SCBEEEEC
T ss_pred CCHHHHHHHHHHHhc---CCCCccccEEEEeeCCcEEechhHhhcC--CC-CCEEEEEC
Confidence 589999999999998 654 355554 478888887655543 34 44444444
No 298
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=26.37 E-value=1.1e+02 Score=23.54 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=43.4
Q ss_pred EEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCeEEEe---CCee--cCCC-CchhhcccCCCcE
Q 022228 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYP-------AAQQMLIY---QGKV--LKDD-TTLEENKVAENSF 70 (300)
Q Consensus 4 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-------~~~qkLi~---~Gki--L~D~-~tL~d~gI~~g~~ 70 (300)
|.+-..+|-.+.+++..+.|+.++|+.+.++-.+ +| ++.-.+.. .|.+ |.|+ +.|.|+... -..
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~--~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~pi 98 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARK--YPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPF 98 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGG--STTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSE
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHh--CchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceE
Confidence 4444558888999999999999999999776321 21 22222222 2443 6554 789888765 334
Q ss_pred EEEEE
Q 022228 71 VVIML 75 (300)
Q Consensus 71 I~v~v 75 (300)
+.|+-
T Consensus 99 Lklve 103 (108)
T 2v1y_A 99 LKVIE 103 (108)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 44443
No 299
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=26.10 E-value=99 Score=23.55 Aligned_cols=54 Identities=6% Similarity=0.097 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee--cC-CCCchhhcccCCCcEEEEEEec
Q 022228 22 DTVFDVKMKIETVQGSDVYPAAQQMLIYQG---KV--LK-DDTTLEENKVAENSFVVIMLTK 77 (300)
Q Consensus 22 ~TV~~LK~kI~~~~g~~~ip~~~qkLi~~G---ki--L~-D~~tL~d~gI~~g~~I~v~v~k 77 (300)
.+...|+.+|...+.. +......|.|.. -. +. |+.....+.....+.+-|.+.+
T Consensus 42 ~s~~~L~~~V~~lFp~--l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~~~~lRlyVke 101 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 101 (102)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred ccHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEc
Confidence 4799999999999641 445667888853 22 22 2222222333335577777654
No 300
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=25.84 E-value=51 Score=25.65 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=49.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CC-eecCCCCchhhcccCCCcEEEEEE
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY--QG-KVLKDDTTLEENKVAENSFVVIML 75 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~--~G-kiL~D~~tL~d~gI~~g~~I~v~v 75 (300)
++|+|..++ ..+++.|..+.-|+-|.-+|-++.... -..+.--|-. +. ..|+-..||..|||.-+..+++.-
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~-~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVK-KDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSC-CCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhccc-ccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 456665544 678889998899999999998776510 1122333332 22 346778899999999998887653
No 301
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=25.78 E-value=1.5e+02 Score=25.46 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=39.3
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEE--e-C---CeecCCCCchhh
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAA-QQMLI--Y-Q---GKVLKDDTTLEE 62 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~qkLi--~-~---GkiL~D~~tL~d 62 (300)
.|.|-..+|....|.|+++.|+.+|-+.|..+.+ +..+ ...|+ + . -+.|.|...+-+
T Consensus 36 ~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~---~~~~~~~~l~E~~~~~~ler~l~d~E~v~~ 99 (291)
T 3tca_A 36 VVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTH---CDCNVDWCLYEIYPELQIERVFEDHENVVE 99 (291)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHC---CCCCTTEEEEEEETTTTEEEECCTTSBHHH
T ss_pred EEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhC---CCCCCCeEEEEeccccccceecccchhHHH
Confidence 4556566888889999999999999999999988 3322 23332 1 1 256777655433
No 302
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=25.54 E-value=53 Score=26.94 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=22.3
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHH
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKI 31 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI 31 (300)
.|+|+ ++|+.+.++++++.||.++-..+
T Consensus 4 ~i~~~-vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 4 ILRLT-LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEEE-ETTEEEEEEEETTCBHHHHHHHT
T ss_pred eEEEE-ECCEEEEEecCCcCcHHHHHHHc
Confidence 45554 69999999999999998876543
No 303
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=25.35 E-value=76 Score=29.80 Aligned_cols=55 Identities=15% Similarity=0.013 Sum_probs=38.7
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHH--HHhCCCCCCCCCeEEEe----CC--eecCCCCchhhc
Q 022228 9 LKGTSFDVEVKPEDTVFDVKMKIE--TVQGSDVYPAAQQMLIY----QG--KVLKDDTTLEEN 63 (300)
Q Consensus 9 l~g~~~~ieV~~~~TV~~LK~kI~--~~~g~~~ip~~~qkLi~----~G--kiL~D~~tL~d~ 63 (300)
++|....|.++.+.||++|-..|. .+.|.+....+..-|.+ .| +.|..+++|.+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 677778899999999999999998 45662211334454533 23 567888888874
No 304
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=25.08 E-value=38 Score=25.47 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 174 WDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 174 f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
|+|+-+.+||+.+-+|..+|.+.| ||.
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L--GIs 84 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM--GIN 84 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH--TSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh--CCC
Confidence 788999999999999999999988 664
No 305
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=25.05 E-value=2.1e+02 Score=21.44 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=35.7
Q ss_pred EEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec
Q 022228 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVL 54 (300)
Q Consensus 3 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL 54 (300)
+|++. ..|+++.|.+..-.+.++|..++...+| ..+-|.|-...|
T Consensus 6 RIKfE-~~gEKRIi~f~RPvkf~dl~qkv~~afG------q~ldl~y~nnEL 50 (94)
T 2jrh_A 6 RIKFE-HNGERRIIAFSRPVKYEDVEHKVTTVFG------QPLDLHYMNNEL 50 (94)
T ss_dssp EEEEE-ETTEEEEEEECSSCCHHHHHHHHHHHHC------SSEEEEEECSSC
T ss_pred EEEEE-ecCceEEEecCCCccHHHHHHHHHHHhC------CeeeeEEeccee
Confidence 34444 4788999999999999999999999999 567777765443
No 306
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=24.51 E-value=1.4e+02 Score=22.17 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeE-EEeCCee
Q 022228 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQM-LIYQGKV 53 (300)
Q Consensus 11 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qk-Li~~Gki 53 (300)
...+.|.|+...|=.++|+.|+..++ +.+.... |+..||.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~---VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFK---VKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTT---CCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CceeeeeeeeeCCce
Confidence 47899999999999999999999999 7777664 4667754
No 307
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=24.17 E-value=55 Score=23.67 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=28.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CCCeEEEeCC
Q 022228 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYP-----AAQQMLIYQG 51 (300)
Q Consensus 13 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-----~~~qkLi~~G 51 (300)
.+.|.|.++.+..+|..+|..+.+ .. ....||-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~---~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT---TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc---ccccccccceeEEEEEc
Confidence 578899999999999999999988 43 2455666643
No 308
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=23.87 E-value=49 Score=24.95 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=22.5
Q ss_pred CEEEEEEcCCC---cEEEEEeCCCCCHHHHHH
Q 022228 1 MMKIFVKTLKG---TSFDVEVKPEDTVFDVKM 29 (300)
Q Consensus 1 mM~I~VKtl~g---~~~~ieV~~~~TV~~LK~ 29 (300)
|.+|+|...+| ....|++....||.+.-.
T Consensus 1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~ 32 (113)
T 3ah7_A 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAH 32 (113)
T ss_dssp CCEEEECCBTTTBTTCEEEECCTTCBHHHHHH
T ss_pred CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHH
Confidence 67889987766 567788999999987643
No 309
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=23.73 E-value=17 Score=31.00 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhc
Q 022228 159 LEGAIQQILDMGGGTWDRDTVVRALRAAY 187 (300)
Q Consensus 159 ~e~~I~~i~eMG~~~f~r~qv~~ALrAaf 187 (300)
.++++.-|+.+| |.+.++.+|++...
T Consensus 146 ~~ea~~AL~~LG---y~~~ea~~av~~~~ 171 (191)
T 1ixr_A 146 AEEAVMALAALG---FKEAQARAVVLDLL 171 (191)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 367899999999 99999999998864
No 310
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=23.23 E-value=1.8e+02 Score=19.80 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=38.1
Q ss_pred EEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchh
Q 022228 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61 (300)
Q Consensus 2 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi~~GkiL~D~~tL~ 61 (300)
|-|.|| +..+.+.+++.......+|...+... | -...|--.|++|....-|.
T Consensus 1 mlvivr-lqdq~lpfelpaga~asqls~lls~~-g------m~fslhtqgrvlseaaeln 52 (69)
T 2jx5_A 1 MLVIVR-LQDQTLPFELPAGARASQLSNLLSSS-G------MAFSLHTQGRVLSEAAELN 52 (69)
T ss_dssp CEEEEE-ETTEEEEEECCTTCCHHHHHHHHHHS-S------CCCEEEETTEECCTTCCCC
T ss_pred CeEEEE-eccccccccccccccHHHHHHHHhhc-C------ceEEEeecchhhhhHHhhC
Confidence 456677 56778999999988899988876654 3 2456778999997655443
No 311
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=23.07 E-value=40 Score=26.54 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=20.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCcccc
Q 022228 179 VVRALRAAYNNPERAVEYLYSG-IPEQAEV 207 (300)
Q Consensus 179 v~~ALrAafnNpdrAvEyLl~G-IP~~~~~ 207 (300)
+..+||.|| |||++||-+| ||++-..
T Consensus 78 ~d~slK~a~---d~A~~fl~~~~lP~~W~~ 104 (117)
T 2yrv_A 78 SELSTKPGL---QKASIFLKTRVVPDNWKM 104 (117)
T ss_dssp HHHHHCHHH---HHHHHHHHTCCCCTTTCC
T ss_pred CchhHHHHH---HHHHHHHhcCCCCCcccc
Confidence 346777775 7999999999 8987544
No 312
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=23.07 E-value=3e+02 Score=22.17 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=51.1
Q ss_pred EEEEEEcCCCcEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE---EeCCeecC-CCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFD-VEVKPEDTVFDVKMKIETVQGSDVYPAAQQML---IYQGKVLK-DDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~-ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkL---i~~GkiL~-D~~tL~d~gI~~g~~I~v~v~ 76 (300)
++|.|...+|..|. |-|...|..-.|-.+.-++.+.+.-.+++..| +-.||.|. .+..=--|.+.....+.+++|
T Consensus 28 IRVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kEL~IPd~ANVFYAM~~sa~~dFvLR 107 (140)
T 3kh0_A 28 IRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLK 107 (140)
T ss_dssp EEEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEEEECCTTCBHHHHSCTTSCCEEEEE
T ss_pred EEEEEEcCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCeEecCCCCceEEEecCCCCccEEEe
Confidence 67888877777665 77888888999988888888833122333333 44688762 233334456655566777788
Q ss_pred cCC
Q 022228 77 KNK 79 (300)
Q Consensus 77 k~~ 79 (300)
++.
T Consensus 108 ~k~ 110 (140)
T 3kh0_A 108 KRT 110 (140)
T ss_dssp ECC
T ss_pred ecC
Confidence 765
No 313
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=22.48 E-value=88 Score=32.78 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=34.8
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHH----hCCCCCCCCCeEEEeCCeec
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETV----QGSDVYPAAQQMLIYQGKVL 54 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~----~g~~~ip~~~qkLi~~GkiL 54 (300)
|++|+++ ++|+.+.++++++.|+.++-..+... .||+.-.+...-++.+|+..
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~vdg~~~ 57 (907)
T 1vlb_A 1 MIQKVIT-VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGKVV 57 (907)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETTEEE
T ss_pred CceEEEE-ECCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEECCeEe
Confidence 6778876 79999999999999998886654322 23322223344555566543
No 314
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=22.45 E-value=1.1e+02 Score=28.23 Aligned_cols=55 Identities=13% Similarity=-0.073 Sum_probs=40.8
Q ss_pred EEcCCCc----EEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEe--C--C--eecCCCCchhhc
Q 022228 6 VKTLKGT----SFDVEVKPEDTVFDVKMKIETVQGSDVYP-AAQQMLIY--Q--G--KVLKDDTTLEEN 63 (300)
Q Consensus 6 VKtl~g~----~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-~~~qkLi~--~--G--kiL~D~~tL~d~ 63 (300)
|...+|. ...|.++.+.|+++|-..|+.+.| +. .+..-|.+ . | ..|+.+++|.+.
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lg---L~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~ 77 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHK---VKNVACYGLRLSHLQSEEVHWLHLDMGVSNV 77 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTT---CSCGGGEEEEEEETTSSCEEEECTTSBHHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcC---CCeEeEEEEEEEEcCCCceEeeCCccchhhh
Confidence 5556776 889999999999999999999999 42 33445554 2 2 247888888654
No 315
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=22.08 E-value=30 Score=25.31 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 022228 174 WDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (300)
Q Consensus 174 f~r~qv~~ALrAafnNpdrAvEyLl~GIP 202 (300)
|+|+-+.+||+.+-+|..+|.+.| ||.
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L--GIs 77 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL--GWG 77 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT--TCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 889999999999999999999987 553
No 316
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=21.69 E-value=41 Score=25.90 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=22.1
Q ss_pred EEcCCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 022228 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQ 35 (300)
Q Consensus 6 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~ 35 (300)
|...+|-+|.++|..+.-+..-|+.|+..+
T Consensus 40 isf~ngatfqvevpgsqh~~sqk~~~ermk 69 (129)
T 1b44_D 40 ITFKSGATFQVEVPGSQHIDSQKKAIERMK 69 (129)
T ss_dssp EECTTSCEEEECCCCTTSCSTHHHHHHHHH
T ss_pred EEecCCcEEEEecCcchhhhhhhhHHHHHH
Confidence 444579999999998877776676666543
No 317
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=21.67 E-value=55 Score=24.08 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHHHH
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIET 33 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~ 33 (300)
||.|++++.+|+.|.++-.--..-.-||..+..
T Consensus 1 ~~~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~ 33 (97)
T 4ajy_C 1 MMYVKLISSDGHEFIVKREHALTSGTIKAMLSG 33 (97)
T ss_dssp -CEEEEECTTCCEEEEEHHHHTTSHHHHHHHCC
T ss_pred CeEEEEEecCCcEEEecHHHHHHhHHHHHHHHh
Confidence 789999999999999874433333455665543
No 318
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=21.31 E-value=56 Score=24.56 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=21.1
Q ss_pred CEEEEEEcCCC---cEEEEEeCCCCCHHHHHH
Q 022228 1 MMKIFVKTLKG---TSFDVEVKPEDTVFDVKM 29 (300)
Q Consensus 1 mM~I~VKtl~g---~~~~ieV~~~~TV~~LK~ 29 (300)
|.+|+|...+| ....|++....||.+.-.
T Consensus 1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~ 32 (111)
T 1i7h_A 1 MPKIVILPHQDLCPDGAVLEANSGETILDAAL 32 (111)
T ss_dssp -CEEEECCBTTTBTTCEEEECCTTCBHHHHHH
T ss_pred CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHH
Confidence 66888886554 556788999999987643
No 319
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.19 E-value=3e+02 Score=21.46 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=48.6
Q ss_pred EEEEEEcCCCcEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecC-CCCchhhcccCCCcEEEEEEe
Q 022228 2 MKIFVKTLKGTSFD-VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI---YQGKVLK-DDTTLEENKVAENSFVVIMLT 76 (300)
Q Consensus 2 M~I~VKtl~g~~~~-ieV~~~~TV~~LK~kI~~~~g~~~ip~~~qkLi---~~GkiL~-D~~tL~d~gI~~g~~I~v~v~ 76 (300)
++|.|...+|..|. |-+...|....|-.+.-++.+.+.-.+++..|+ -.||.|. .+..=--|.+.....+.+++|
T Consensus 31 IRVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNVFYAm~~s~~~dFvLR 110 (115)
T 1rax_A 31 IRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLK 110 (115)
T ss_dssp EEEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEEEEECSSSCEEEECTTSCHHHHSCTTSCCEEEEE
T ss_pred EEEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCCCCeEecCCCcceEEEEcCCCCccEEEe
Confidence 56777766676554 778888888888888888888332234455554 2566652 222223445555566777777
Q ss_pred cCC
Q 022228 77 KNK 79 (300)
Q Consensus 77 k~~ 79 (300)
++.
T Consensus 111 ~r~ 113 (115)
T 1rax_A 111 KRT 113 (115)
T ss_dssp ECC
T ss_pred ecC
Confidence 664
No 320
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=21.08 E-value=80 Score=23.33 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=30.1
Q ss_pred ccCCChHHHHHHHHhccCCCC-CHHHHHHH-HHHhcCChHHHHHHHHh
Q 022228 154 VAGNNLEGAIQQILDMGGGTW-DRDTVVRA-LRAAYNNPERAVEYLYS 199 (300)
Q Consensus 154 ~~g~~~e~~I~~i~eMG~~~f-~r~qv~~A-LrAafnNpdrAvEyLl~ 199 (300)
..+.+++..|+.+++-| .| .+++|+|+ ||. +-.-++.++.|-.
T Consensus 9 sL~~~l~~~i~~~V~sG--~Y~s~SEviR~~lR~-l~~re~~l~~Lr~ 53 (88)
T 3kxe_C 9 VLGDHFQAFIDSQVADG--RYGSASEVIRAGLRL-LEENEAKLAALRA 53 (88)
T ss_dssp CCCHHHHHHHHHHHTTT--SCSSHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcC--CCCCHHHHHHHHHHH-HHHHhHHHHHHHH
Confidence 34678899999999865 37 99999986 554 3334556666543
No 321
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=20.68 E-value=55 Score=24.26 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=13.5
Q ss_pred cCCCCCHHHHHHHHHHhcCCh
Q 022228 170 GGGTWDRDTVVRALRAAYNNP 190 (300)
Q Consensus 170 G~~~f~r~qv~~ALrAafnNp 190 (300)
.-|.|.|+|++ |.-++|.|.
T Consensus 8 pegpFtReQA~-aV~~~Y~NV 27 (87)
T 2hjj_A 8 PPGPFTRRQAQ-AVTTTYSNI 27 (87)
T ss_dssp --CCCCHHHHH-HHHHHCTTE
T ss_pred CCCCccHHHHH-HHHHHhccc
Confidence 34689999964 556677775
No 322
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.62 E-value=22 Score=28.39 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=30.2
Q ss_pred HHHHHHHhc-cCCCC-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 022228 161 GAIQQILDM-GGGTW-DRDTVVRALRAAYNNPERAVEYLYSG 200 (300)
Q Consensus 161 ~~I~~i~eM-G~~~f-~r~qv~~ALrAafnNpdrAvEyLl~G 200 (300)
..+++|-|. | - +-+-...||+|+.+|...||.+|..-
T Consensus 20 ~lLNQLrEITG---IqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 20 MLLNQLREITG---IQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 457888887 5 5 45666789999999999999999754
No 323
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=20.14 E-value=1.3e+02 Score=22.32 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=24.5
Q ss_pred EEEcCCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 022228 5 FVKTLKGTSFDVEVKPEDTVFDVKMKIETVQ 35 (300)
Q Consensus 5 ~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~ 35 (300)
.|...+|-+|.++|..+.-+..-|+.|+..+
T Consensus 40 iisf~ngatfqvevpgsqh~~sqk~~~ermk 70 (104)
T 3chb_D 40 IITFKNGATFQVEVPGSQHIDSQKKAIERMK 70 (104)
T ss_dssp EEECTTCCEEEECCCCTTSCHHHHHHHHHHH
T ss_pred EEEecCCcEEEEecCcchhhhhhhhHHHHHH
Confidence 3455589999999999988888888777653
No 324
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=20.05 E-value=1.2e+02 Score=21.87 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=22.5
Q ss_pred CEEEEEEcCCCcEEEEEeCCCCCHHHHHHHH
Q 022228 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKI 31 (300)
Q Consensus 1 mM~I~VKtl~g~~~~ieV~~~~TV~~LK~kI 31 (300)
|.+|+|+..+| .+.|++.+..||.+.-...
T Consensus 1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~ 30 (93)
T 1wri_A 1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEK 30 (93)
T ss_dssp CEEEEEEETTE-EEEEEECTTSCHHHHHHHH
T ss_pred CEEEEEEECCC-eEEEEECCCCcHHHHHHHC
Confidence 46788875555 6788999999998876554
Done!