BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022229
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O96623|ARPC2_DICDI Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium
discoideum GN=arcB PE=1 SV=1
Length = 293
Score = 160 bits (406), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 169/293 (57%), Gaps = 25/293 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
MLLL++H+R L + +++ + + + + +FD V+++VQ T + +++SVSL
Sbjct: 1 MLLLETHNRILYDEVISHFEGDRRVNNI---FADFDGVKFNVQ-TSDDKSSLMVSVSLHA 56
Query: 61 PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
L G +K+ YG+++Q P G+++TL + S NK L
Sbjct: 57 AADL------LKNGGSALLKSVYGDMLQA--KPEGGYDVTLVIQSS----FSGNKEELAK 104
Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
K++ ++ ++ AP +V + + +K + +++A+ +R E+F+L PQ + V V+F +
Sbjct: 105 KVSLLKRHLVAAPFLMVFEGIEAK---KPLPEIIAINYRTDETFYLKPQGDNVIVIFDIA 161
Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPS-ETLSANAGFVT 238
F D+ D +L+ FLQ FV+ R+T ++N P +S PPLELKGV AN GFV+
Sbjct: 162 FKDADDVILSKIFLQSFVDVRKT--ISNVPSITFSQKDPPLELKGVKGVRAGQANHGFVS 219
Query: 239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
FV+FP H+ KK + + TF Y+ YH+KC++G+MHT MR RVES+I+V+
Sbjct: 220 FVLFPAHI--KKPQESADLIQTFRDYLHYHIKCAKGYMHTSMRNRVESLIQVL 270
>sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 complex subunit 2
OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1
Length = 301
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 155/295 (52%), Gaps = 20/295 (6%)
Query: 1 MLLLQSHSRFLLEALLNRVQNVDKATE---VDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M++L+ ++R ++E L + N + + V+ + +FD V Y + + ++LS+S
Sbjct: 1 MIILEQNNRIIVELLEQKFANAKEGGKPESVNVTFADFDGVLYKLSNPDGDRTKIILSIS 60
Query: 58 LPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHA 117
L + GA + ++ YG + P GFN+TL+ NL+ LP + +
Sbjct: 61 LK------FYTELQQHGADDLLRRVYGG--HMRSTPEQGFNVTLEYNLADLPADTTD--- 109
Query: 118 LLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVF 177
LV+ AS + A V K+ + + + + +R E+ ++ +A++VTV+F
Sbjct: 110 -LVQAASALKRNCFAS--VFEKYFEFQEAGQEGHKRAVINYRDDETMYIEAKADRVTVIF 166
Query: 178 PMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAGF 236
F D+ D ++ FLQEF E R+ + AP ++S PPLELK +P + N G+
Sbjct: 167 STVFKDADDVIIGKVFLQEFREGRKAS--QTAPAVLYSLGEPPLELKDLPEARVGDNVGY 224
Query: 237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
+TFV+FPRH K D T+ + +F Y+ YH+KCS+ ++HTRMR + ++V+
Sbjct: 225 ITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCSKVYLHTRMRAKTTDFLKVL 279
>sp|O14241|ARPC2_SCHPO Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1
Length = 317
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 157/306 (51%), Gaps = 26/306 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
ML L ++ F+ E L R + + + +D +FD V +H+ T + +L+S+S+
Sbjct: 1 MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHIS-TPEEKTKILISLSMKC 58
Query: 61 PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
P + +G ++ +K YG V P G+N ++ ++L +LP +E K L +
Sbjct: 59 YPE------LVNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109
Query: 121 KIASVREVVLGAPL------RVVLKHLASKT--------VASDIDQLLALVHRPKESFFL 166
I+ ++ VL AP + L LA K + +L+A+ +R +E+ L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169
Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
P+ ++VTVVF +F + D + FLQEFV+ARR + AP ++S PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229
Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
+ GFVTFV+F RH + + + ++ F + +H+K S+ +MH RMR+RV
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVA 289
Query: 286 SMIRVV 291
+V+
Sbjct: 290 DFQKVL 295
>sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii
GN=ARPC2 PE=2 SV=1
Length = 300
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 153/296 (51%), Gaps = 24/296 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +K V+ + +FD V YH+ + V++S+S
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ L P G+N++L +L LP + K
Sbjct: 61 LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+++ + ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D V+ F+QEF E RR + + AP ++S PPLELK + + N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
++TFV+FPRH D T+ + TF Y+ YH+KCS+ ++HTRMR + ++V+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277
>sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens
GN=ARPC2 PE=1 SV=1
Length = 300
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 153/296 (51%), Gaps = 24/296 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +K V+ + +FD V YH+ + V++S+S
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ L P G+N++L +L LP + K
Sbjct: 61 LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+++ + ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D V+ F+QEF E RR + + AP ++S PPLELK + + N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
++TFV+FPRH D T+ + TF Y+ YH+KCS+ ++HTRMR + ++V+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277
>sp|Q3MHR7|ARPC2_BOVIN Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2
PE=1 SV=1
Length = 300
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 153/296 (51%), Gaps = 24/296 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +K V+ + +FD V YH+ + V++S+S
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ L P G+N++L +L LP + K
Sbjct: 61 LK-------FYKELQAHGADELLKRVYGSY---LVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+++ + ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D V+ F+QEF E RR + + AP ++S PPLELK + + N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
++TFV+FPRH D T+ + TF Y+ YH+KCS+ ++HTRMR + ++V+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277
>sp|P85970|ARPC2_RAT Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus
GN=Arpc2 PE=1 SV=1
Length = 300
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 153/296 (51%), Gaps = 24/296 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +K V+ + +FD V YH+ + V++S+S
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ L P G+N++L +L LP + K
Sbjct: 61 LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+++ + ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D V+ F+QEF E RR + + AP ++S PPLELK + + N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
++TFV+FPRH D T+ + TF Y+ YH+KCS+ ++HTRMR + ++V+
Sbjct: 222 YITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277
>sp|P53731|ARPC2_YEAST Actin-related protein 2/3 complex subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC35 PE=1
SV=1
Length = 342
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 158/315 (50%), Gaps = 30/315 (9%)
Query: 1 MLLLQSHSRFLLEALLNRVQNVDKAT--EVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSL 58
ML LQ + + + L ++ + K + +D +FD YH+ T ++ I+LLSV
Sbjct: 1 MLHLQPQNLLIQKTLNEAIEALRKGSPLTMDRIVSDFDYTTYHISNTAEDKSILLLSVKT 60
Query: 59 P--VPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
V E G L A + V I G++ TL++ L++L
Sbjct: 61 KAWVSVSECQLDGSLTLLKFLADHYSSLGGVTIPSEVEPGYDYTLQITLAELVQES---- 116
Query: 117 ALLVKIASVREVVLGAPLRVVLK---------------HLASKTVASDIDQ-LLALVHRP 160
+++++ ++ ++L P + + + VA++ D L + +R
Sbjct: 117 --ILQLSVLKTIILSFPFELAISKFIELSQQQPAPVEAEITGGEVAANGDNTLFTIKYRD 174
Query: 161 KESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEAR-RTAGLNNAPLCMWSSSPP 219
+E+ F+ P ++VT++F F D D + FLQEFV+AR R + +AP ++S PP
Sbjct: 175 EENIFIKPSNDRVTIIFETIFQDETDKIFGKVFLQEFVDARKRNRQIQSAPQVLYSHEPP 234
Query: 220 LELKGV--PSETLSANAGFVTFVIFPRHVEGKKLD-RTVWNLSTFHAYVSYHVKCSEGFM 276
LELK + P + + F+TFV+FPRH + K+L ++ L+ F Y YH+KCS+ +M
Sbjct: 235 LELKRLYQPPKVAEQSRRFITFVLFPRHFQTKELQFHSICQLTLFRNYFHYHIKCSKAYM 294
Query: 277 HTRMRRRVESMIRVV 291
H+RMR RV+S I+V+
Sbjct: 295 HSRMRFRVDSFIKVL 309
>sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex subunit 2 OS=Mus musculus
GN=Arpc2 PE=1 SV=3
Length = 300
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 153/296 (51%), Gaps = 24/296 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +K V+ + +FD V YH+ + V++S+S
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ L P G+N++L +L LP + K
Sbjct: 61 LK-------FYKELQAHGADELLKRVYGS---FLVNPEPGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+++ + ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D V+ F+QEF E RR + + AP ++S PPLELK + + N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
++TFV+FPRH D T+ + TF Y+ YH+KCS+ ++HTRMR + ++V+
Sbjct: 222 YITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277
>sp|Q9VIM5|ARPC2_DROME Probable actin-related protein 2/3 complex subunit 2 OS=Drosophila
melanogaster GN=Arc-p34 PE=2 SV=2
Length = 301
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 151/296 (51%), Gaps = 24/296 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNVD---KATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E LL + +N K +D +FD V YH+ + V +S+S
Sbjct: 1 MILLEINNRIIEETLLVKYRNAQAGLKPESIDIRIADFDGVLYHISNVNGDKTKVRISIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ +L +G+N+++ +NL ++P E+
Sbjct: 61 LK-------FYKQLQEHGADELLKREYGS---LLTDTEEGYNVSVLINLEEIP---EDCE 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+ +I ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 QIAKRIGLLKRNCFAS---VFEKYFDYQEQGEEGQKRAVINYRNDETLYVEAKPDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D ++ F+QE E RR + + AP ++S PPLEL + + N G
Sbjct: 165 FSTIFRDEDDVIIGKVFMQELREGRRAS--HTAPQVLFSHREPPLELANTDAR-VGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
+VTFV+FPRH + D T+ + F Y+ YH+KCS+ ++H+RMR + ++V+
Sbjct: 222 YVTFVLFPRHTNKETRDNTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVL 277
>sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles
gambiae GN=Arc-p34 PE=3 SV=2
Length = 304
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 148/296 (50%), Gaps = 21/296 (7%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +KA +D +FD V +H+ + V S+S
Sbjct: 1 MILLEINNRIVEETLTVKFKNAIAGNKAESIDVTVADFDGVLFHISNINGDKTKVRTSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ +L P DG+N+++ ++L +P EN
Sbjct: 61 LK-------FYKQLQEHGADELLKREYGD---LLVAPEDGYNVSVLVDLENIP---ENWE 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+ KI ++ + + + + + +R E+ ++ + ++VTVV
Sbjct: 108 ETVRKIGLLKRNCFASVFEKYFDFQSQGEGEGEGQKRAVINYRNDETMYVEAKPDRVTVV 167
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D VL F+QE E RR + + AP ++S PPLEL + + N G
Sbjct: 168 FSTIFRDEDDVVLGKVFMQELREGRRAS--HTAPQVLFSHREPPLELANTGAR-VGENIG 224
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
+VTFV+FPRH + D T+ + F Y+ YH+KCS+ ++H+RMR + ++V+
Sbjct: 225 YVTFVLFPRHTAKETRDNTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTTEFLKVL 280
>sp|B8GC73|RUVX_CHLAD Putative Holliday junction resolvase OS=Chloroflexus aggregans
(strain MD-66 / DSM 9485) GN=Cagg_0094 PE=3 SV=1
Length = 142
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 117 ALLVKIASVREVVLGAPLRVVLKHL-ASKTVASDIDQLLALVHRPKESF------FLIPQ 169
A LV VR VV+G PL + +H + + +D L A+++ P E F Q
Sbjct: 47 ARLVAERGVRRVVVGLPLTMRGEHGPQAAAIQRFVDALAAVLNCPVEMFDERLTSVAAEQ 106
Query: 170 AEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRT 203
+ V P + + ID V A+ LQ++++ARR
Sbjct: 107 MLRNLGVKPAKIKEQIDQVAASIILQDYLDARRN 140
>sp|O04533|LRK52_ARATH Putative L-type lectin-domain containing receptor kinase V.2
OS=Arabidopsis thaliana GN=LECRK52 PE=3 SV=1
Length = 656
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 25/136 (18%)
Query: 17 NRVQNVDKATEVDYH-WVEFDDVRYHVQVTM-----KNPHIVLLSVSLPVPP--PETIFI 68
R+ N+D A+ W+E+++ + VTM P I LLS+ + P E ++I
Sbjct: 169 GRLVNLDIASGKPIQVWIEYNNSTKQLDVTMHSIKISKPKIPLLSMRKDLSPYLHEYMYI 228
Query: 69 G----GLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLP--PNEENKHALLVKI 122
G G P + + ++ N + D +NLS+LP P+E+ + +L KI
Sbjct: 229 GFTSVGSPTSSHYILGWSFNNKGAVSD-----------INLSRLPKVPDEDQERSLSSKI 277
Query: 123 ASVREVVLGAPLRVVL 138
++ + G L +VL
Sbjct: 278 LAISLSISGVTLVIVL 293
>sp|O82355|LEA2R_ARATH Desiccation-related protein At2g46140 OS=Arabidopsis thaliana
GN=At2g46140 PE=1 SV=1
Length = 166
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 3 LLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
LL F E L N +VD+ V D V YH +V++KNP+ S S+P+
Sbjct: 19 LLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPY----SQSIPI 72
>sp|P96403|Y221_MYCTU Putative diacyglycerol O-acyltransferase Rv0221/MT0231
OS=Mycobacterium tuberculosis GN=Rv0221 PE=2 SV=2
Length = 469
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 30/117 (25%)
Query: 94 RDGFNLTLKLNLSKLP-PNEENK--HALLVKIASVREVVLGAPLRVVLKHLASKTVASDI 150
RDG N L LN+S +P P E + AL+ +I SV + G+ L + TV S +
Sbjct: 367 RDGQNKVLNLNISNVPGPRERGRVGAALVTEIYSVGPLTAGSGLNI--------TVWSYV 418
Query: 151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLN 207
DQL V + TV P + + +F+E RR AGL+
Sbjct: 419 DQLNISV-----------LTDGSTVQDPHE--------VTAGMIADFIEIRRAAGLS 456
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,139,139
Number of Sequences: 539616
Number of extensions: 4348792
Number of successful extensions: 8984
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8935
Number of HSP's gapped (non-prelim): 16
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)