Query 022229
Match_columns 300
No_of_seqs 120 out of 195
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:03:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_D Actin-related protein 2 100.0 9E-121 3E-125 860.9 19.2 280 1-291 1-295 (317)
2 1k8k_D P34, ARP2/3 complex 34 100.0 3E-118 1E-122 840.7 21.8 274 1-292 1-278 (300)
3 3dwl_F Actin-related protein 2 94.4 0.11 3.7E-06 45.0 7.4 119 151-290 48-167 (168)
4 1k8k_F P20, ARP2/3 complex 20 93.4 0.12 4.3E-06 44.7 5.9 119 151-290 48-167 (168)
5 3ifv_A PCNA; processivity fact 62.1 20 0.00067 31.5 7.1 99 131-244 135-243 (247)
6 3dwl_F Actin-related protein 2 56.0 9.4 0.00032 33.0 3.7 48 50-108 68-123 (168)
7 3fds_D DNA polymerase sliding 55.3 25 0.00084 30.8 6.5 97 130-244 136-244 (245)
8 1k8k_F P20, ARP2/3 complex 20 52.6 14 0.00047 32.0 4.2 56 50-108 68-123 (168)
9 3lx2_A DNA polymerase sliding 40.2 59 0.002 28.6 6.6 100 131-248 138-251 (259)
10 3p91_A Proliferating cell nucl 36.5 55 0.0019 29.0 5.8 99 131-246 145-258 (265)
11 3fds_C DNA polymerase sliding 29.4 1.7E+02 0.0059 25.7 7.8 99 129-244 138-248 (249)
12 3ogk_Q JAZ1 incomplete degron 23.7 41 0.0014 19.8 1.7 20 191-210 2-21 (22)
13 3sl2_A Sensor histidine kinase 22.4 2E+02 0.0069 22.5 6.4 35 75-110 122-156 (177)
14 2hew_F Tumor necrosis factor l 21.4 72 0.0025 26.9 3.4 33 152-184 68-105 (152)
15 4a4y_A Protein MXIG; protein b 20.6 71 0.0024 25.9 3.1 29 22-50 101-133 (146)
16 2hev_F Tumor necrosis factor l 20.2 64 0.0022 26.9 2.8 33 152-184 67-102 (137)
No 1
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-121 Score=860.91 Aligned_cols=280 Identities=31% Similarity=0.610 Sum_probs=241.5
Q ss_pred CcccccccHHHHHHHHHhhhccCCccccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCchHHHHHH
Q 022229 1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIK 80 (300)
Q Consensus 1 MilLe~~N~ii~~~L~~~~~~~~kp~~~d~~~~DFD~v~yhis~~~~~k~~l~lSislk~~~~~~l~~~~l~~G~~e~Lk 80 (300)
||+||++|+||+++|++|+. +++|.++|++++|||||+||||++ ++|++|+|||++|| |.++. +||+.|+||
T Consensus 1 MilLe~~N~ii~~~L~~~~~-~~~p~~~d~~~~DFDgv~yHis~p-~~k~~l~lSi~~~~--~~~l~----~~Ga~e~Lk 72 (317)
T 3dwl_D 1 MLSLDYNNIFIYELLTERFS-SENPSSIDQVVTDFDGVTFHISTP-EEKTKILISLSMKC--YPELV----NYGTLDLLK 72 (317)
T ss_dssp CCSCCSSCHHHHHHHHHHTT-SCC-----CEEEETTTEEEECCCC----CCCCEEEECSS--HHHHH----TTTHHHHHH
T ss_pred CcccccccHHHHHHHHHHhc-cCCCCccceeEEcCCCcEEEEeCC-CCCceEEEEEeccc--hHHHH----hcCHHHHHH
Confidence 99999999999999999996 589999999999999999999996 89999999999995 56653 699999999
Q ss_pred HhhcccccccCCCCCCcceEEEecCCCCCCChhhHHHHHHHHHhHHHHHhhchHHHHHHHhc---cc-----ccc-----
Q 022229 81 AAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLA---SK-----TVA----- 147 (300)
Q Consensus 81 ~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~LKrn~laApF~~~f~~l~---~~-----~~~----- 147 (300)
++||+++ .+||+|||+||++||++||+++|+|+++|+++|+||||||||||+++|+..+ +. +.+
T Consensus 73 ~~Yg~~~---~~pe~GY~~sL~idL~~lp~~~e~~~~li~~is~LKrn~~aapFe~~f~~~~~L~~~~~~~~~~~~~~~~ 149 (317)
T 3dwl_D 73 QIYGAYV---HEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDK 149 (317)
T ss_dssp HHSTTTE---ECCCTTSSEEECCCTTSCCC-CCSHHHHHHHHHTHHHHHTSHHHHHHHTHHHHCC----------CCCCH
T ss_pred HHhcccc---CCCCCCceEEEEEEhhhCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccccccccccccc
Confidence 9999998 6799999999999999999999999999999999999999999999996433 21 011
Q ss_pred -cccCcceEEeccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCC-CCCCcccCCC
Q 022229 148 -SDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225 (300)
Q Consensus 148 -~~~~~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s-~~PPlEl~~~ 225 (300)
.+++++++||||+||+|||+|++|||||||||+|+|+||+||||||||||+||||++++|+||||+|| ++|||||+|+
T Consensus 150 ~~~~~~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlEL~~~ 229 (317)
T 3dwl_D 150 QATSQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229 (317)
T ss_dssp HHHTTTCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSCCCSC
T ss_pred cccCCCeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChHHhCC
Confidence 12568999999999999999999999999999999999999999999999999999789999999999 6999999999
Q ss_pred CCCCCCCCeeEEEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHh
Q 022229 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291 (300)
Q Consensus 226 ~~~~~~~n~gyvTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lkvL 291 (300)
++++.++|+|||||||||||++++++++|||+||+|||||||||||||||||||||+||++|||||
T Consensus 230 ~~~~~~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~vL 295 (317)
T 3dwl_D 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVL 295 (317)
T ss_dssp C-------CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHHH
Confidence 988889999999999999999988888999999999999999999999999999999999999998
No 2
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D
Probab=100.00 E-value=2.9e-118 Score=840.67 Aligned_cols=274 Identities=31% Similarity=0.590 Sum_probs=256.7
Q ss_pred CcccccccHHHHHHHHHhhhc---cCCccccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCchHHH
Q 022229 1 MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE 77 (300)
Q Consensus 1 MilLe~~N~ii~~~L~~~~~~---~~kp~~~d~~~~DFD~v~yhis~~~~~k~~l~lSislk~~~~~~l~~~~l~~G~~e 77 (300)
|||||++|+||+++|++|+.+ +++|.++|++++|||||+||||++++||++++|||++|| |.+|. +||+.|
T Consensus 1 MilLe~~n~ii~~~L~~r~~~~~~~~~p~~~d~~~~DFDgv~yHis~~~~dk~~i~vSisl~~--~~~L~----~~Ga~e 74 (300)
T 1k8k_D 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKF--YKELQ----AHGADE 74 (300)
T ss_dssp CCSCCSSCHHHHHHHHHHHHHHHHTCCCCCCEEEEEETTTEEEEEECGGGCTTEEEEEEECTT--HHHHH----TTTHHH
T ss_pred CccccccCHHHHHHHHHHHhhhccCCCCCccceEEecCCCcEEEeecCCCCCcEEEEEEEccc--hHHHh----hcCHHH
Confidence 999999999999999999986 678999999999999999999999999999999999995 56653 599999
Q ss_pred HHHHhhcccccccCCCCCCcceEEEecCCCCCCChhhHHHHHHHHHhHHHHHhhchHHHHHHHhcccccccccCcceEEe
Q 022229 78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALV 157 (300)
Q Consensus 78 ~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~LKrn~laApF~~~f~~l~~~~~~~~~~~~~~I~ 157 (300)
+||++||+++ .+||+|||+||.+||++||++ ++++|+++|+||||||||||+++|+ +++. +++++.+++|+
T Consensus 75 ~Lk~~Yg~~v---~~pe~Gy~~tL~idl~~lp~~---~~~li~kia~LKrn~laapF~~~F~-~~~~--~~~~~~~~~I~ 145 (300)
T 1k8k_D 75 LLKRVYGSYL---VNPESGYNVSLLYDLENLPAS---KDSIVHQAGMLKRNCFASVFEKYFQ-FQEE--GKEGENRAVIH 145 (300)
T ss_dssp HHHHHHGGGE---ESCCTTCSEEEEEETTSCCSC---HHHHHHHHHTHHHHHHHHHHHHHHH-HHHH--TCCSCCCEEEE
T ss_pred HHHHHccccc---cCCCCCccEEEEEEHHHCCcC---HHHHHHHHHHHHHHHHHHHHHHHHH-HHhc--ccCCCceEEee
Confidence 9999999997 379999999999999999998 4559999999999999999999999 4433 33444559999
Q ss_pred ccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCCC-CCCcccCCCCCCCCCCCeeE
Q 022229 158 HRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGF 236 (300)
Q Consensus 158 YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s~-~PPlEl~~~~~~~~~~n~gy 236 (300)
||++|+|||+|++|||||||||+|+|+||+||||||||||+||||+ +++||||+||+ +||+||+|++ ...++|+||
T Consensus 146 YR~~E~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~--~~~APqvlfs~~~PPlEL~~~~-~~~~~n~gy 222 (300)
T 1k8k_D 146 YRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTAPQVLFSHREPPLELKDTD-AAVGDNIGY 222 (300)
T ss_dssp EETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTSCEEEEEESSCCGGGTTTT-CCCSTTEEE
T ss_pred cCCCccEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhc--cCCCCceecCCCCCChHHcCCc-cccCCCeEE
Confidence 9999999999999999999999999999999999999999999999 99999999998 9999999998 466999999
Q ss_pred EEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhh
Q 022229 237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVVL 292 (300)
Q Consensus 237 vTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lkvL~ 292 (300)
|||||||||++++++++|||+||+|||||||||||||||||||||+||++|||||-
T Consensus 223 VTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvLn 278 (300)
T 1k8k_D 223 ITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLN 278 (300)
T ss_dssp EEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999983
No 3
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=94.43 E-value=0.11 Score=44.99 Aligned_cols=119 Identities=20% Similarity=0.311 Sum_probs=95.7
Q ss_pred CcceEEeccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCCCC
Q 022229 151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL 230 (300)
Q Consensus 151 ~~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s~~PPlEl~~~~~~~~ 230 (300)
-+++.|...+.|.++|.|+-+.|.|.+...-.|+-++++.+-|+. |.-.|-. +=+| ||-.|-
T Consensus 48 l~p~~I~Rne~E~clIE~SiNSvRvSi~ikqaDeie~iL~~kf~r-Fl~~RAe-----~f~I---------LRrkPv--- 109 (168)
T 3dwl_F 48 LKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDEIERILVRKFMQ-FLMGRAE-----SFFI---------LRRKPV--- 109 (168)
T ss_dssp CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSSHHHHHHHHHHH-HHGGGTT-----TSTT---------BCSSCC---
T ss_pred cCceEEeecCCceEEEEcccceEEEEEEehhhchHHHHHHHHHHH-HHHhccc-----ceEE---------eeeCCc---
Confidence 468999999999999999999999999999999999999999976 4444321 2222 222221
Q ss_pred CCCeeE-EEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHH
Q 022229 231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRV 290 (300)
Q Consensus 231 ~~n~gy-vTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lkv 290 (300)
-|| |||.+--.|++.=-..+-|+.|.+|=.-.-=-|.--|-.+.+|=|.=.++||+-
T Consensus 110 ---~GYDISFLItn~H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~A~~fl~~ 167 (168)
T 3dwl_F 110 ---QGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSC 167 (168)
T ss_dssp ---TTCSEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred ---CCcceeeeehHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 133 899999999976566789999999999998889999999999999888898874
No 4
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=93.39 E-value=0.12 Score=44.73 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=95.0
Q ss_pred CcceEEeccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCCCC
Q 022229 151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL 230 (300)
Q Consensus 151 ~~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s~~PPlEl~~~~~~~~ 230 (300)
-+++.|...++|..+|.|+-+.|.|.+...-.|+-++++.+-|+. |.-.|-. +=+||- -.|-
T Consensus 48 l~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~DeiE~iL~~kf~r-Fl~~RAe-----~f~ILR---------rkPv--- 109 (168)
T 1k8k_F 48 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRAE-----NFFILR---------RKPV--- 109 (168)
T ss_dssp CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTTT-----TSTTBC---------SSCC---
T ss_pred ccceEEEecCCceEEEEcccceEEEEEEEcccChHHHHHHHHHHH-HHHhccc-----ceEEee---------eCCc---
Confidence 368999999999999999999999999999999999999999976 5544432 222222 2221
Q ss_pred CCCeeE-EEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHH
Q 022229 231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRV 290 (300)
Q Consensus 231 ~~n~gy-vTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lkv 290 (300)
-|| |||.+---|++.=...+-|+.|.+|=.-.-=-|.--|-.+.+|=|.=.++|++-
T Consensus 110 ---~GYDISFLItn~h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR~~A~~fl~~ 167 (168)
T 1k8k_F 110 ---EGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKN 167 (168)
T ss_dssp ---TTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---CCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Confidence 133 889999999976567789999999998888888888999999999888888763
No 5
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=62.10 E-value=20 Score=31.54 Aligned_cols=99 Identities=17% Similarity=0.354 Sum_probs=66.0
Q ss_pred hchHHHHHHHhcccccccccCcceEEeccC-CceEEEeecCC--eeEEEee----cee-cCCcchhhhHHHHHHHHHHhh
Q 022229 131 GAPLRVVLKHLASKTVASDIDQLLALVHRP-KESFFLIPQAE--KVTVVFP----MRF-NDSIDTVLATSFLQEFVEARR 202 (300)
Q Consensus 131 aApF~~~f~~l~~~~~~~~~~~~~~I~YR~-~E~iyi~~~~D--rVTViFs----t~F-~D~~D~vigkvFLQEFvdaRr 202 (300)
++.|.++.+.++.-. +.+.|.--+ ++.+.+..++| ++.+.++ ..+ .++....|.--+|.+|..|
T Consensus 135 s~~f~~~i~~~~~~s------d~V~i~~~~~~~~~~~s~~gd~g~~~~~l~~~~~~~~~~e~~~~~F~~~YL~~~~Ka-- 206 (247)
T 3ifv_A 135 GTHLDRGIKAADMVS------DHIRLRVDGAEETFHIEAEGDTDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKA-- 206 (247)
T ss_dssp HHHHHHHHHHHHHHC------SEEEEEEETTTTEEEEEEECSSCEEEEEECGGGCSEEEECCCEEEEEHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhC------CEEEEEEECCCCEEEEEEEecceEEEEEECCCceEEEecCeEEEEEeHHHHHHhhhh--
Confidence 566666665544211 356676653 56787877765 6777775 233 5567778888899988876
Q ss_pred hcCCCCCCCccCC--CCCCcccCCCCCCCCCCCeeEEEEEecCC
Q 022229 203 TAGLNNAPLCMWS--SSPPLELKGVPSETLSANAGFVTFVIFPR 244 (300)
Q Consensus 203 ~~~~~~APqVl~s--~~PPlEl~~~~~~~~~~n~gyvTFvLFpR 244 (300)
++.+.+|..+ .+-|+.|+=- .+.+.||++|.|=||
T Consensus 207 ---~~~s~~V~i~~~~~~Pl~l~~~----i~~~~g~~~~~lAPr 243 (247)
T 3ifv_A 207 ---IPTDAEVTVELGEEFPVKLHYQ----IAEGMGTITYMLAPR 243 (247)
T ss_dssp ---SCTTCEEEEEECBSSCEEEEEE----EGGGTEEEEEEECCC
T ss_pred ---ccCCCEEEEEecCCccEEEEEE----EcCCcEEEEEEEeec
Confidence 5567888544 5678887631 222468999999997
No 6
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=55.96 E-value=9.4 Score=32.99 Aligned_cols=48 Identities=8% Similarity=0.196 Sum_probs=31.7
Q ss_pred ceEEEEEeeCCCCCccccccCCCchHHHHHHHhhcc--------cccccCCCCCCcceEEEecCCCC
Q 022229 50 HIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGN--------VVQILDPPRDGFNLTLKLNLSKL 108 (300)
Q Consensus 50 ~~l~lSislk~~~~~~l~~~~l~~G~~e~Lk~~Yg~--------~~~i~~~pE~GYdvTL~iDL~~l 108 (300)
|-+.|||.+|- -++ ....|-++|-. +....-.|=+|||+|.+|.-..+
T Consensus 68 NSvRvSi~ikq--aDe---------ie~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~H~ 123 (168)
T 3dwl_F 68 NSVRFSIRIKQ--VDE---------IERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHT 123 (168)
T ss_dssp SEEEEEEECCC--CSS---------HHHHHHHHHHHHHGGGTTTSTTBCSSCCTTCSEEEEEETTHH
T ss_pred ceEEEEEEehh--hch---------HHHHHHHHHHHHHHhcccceEEeeeCCcCCcceeeeehHHHH
Confidence 67899999982 122 23344444433 33334578999999999988776
No 7
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=55.29 E-value=25 Score=30.81 Aligned_cols=97 Identities=14% Similarity=0.296 Sum_probs=65.8
Q ss_pred hhchHHHHHHHhcccccccccCcceEEeccCCceEEEeecCC--eeEEEee------cee-cCCcchhhhHHHHHHHHHH
Q 022229 130 LGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAE--KVTVVFP------MRF-NDSIDTVLATSFLQEFVEA 200 (300)
Q Consensus 130 laApF~~~f~~l~~~~~~~~~~~~~~I~YR~~E~iyi~~~~D--rVTViFs------t~F-~D~~D~vigkvFLQEFvda 200 (300)
-++.|.++.+.++.-. +.+.|.--++ .+.+.+++| ++.+.++ ..+ .++....|.--+|.+|..|
T Consensus 136 ~s~~f~~~i~~~~~~s------~~V~i~~~~~-~l~~s~~gd~g~~~~~l~~~~~~~~~~~~e~~~~~F~~~YL~~~~ka 208 (245)
T 3fds_D 136 LTITFADIIDELSDLG------EVLNIHSKEN-KLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKM 208 (245)
T ss_dssp EHHHHHHHHHHHTTTC------SEEEEEEETT-EEEEEEECSSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGG
T ss_pred EHHHHHHHHHHHHhcC------CEEEEEEeCC-EEEEEEEecCcEEEEEEcCCCCceEEEecceEEEEEEHHHHHHHhhh
Confidence 3667777776655321 3566766555 577777664 6888876 345 6677888888888877755
Q ss_pred hhhcCCCCCCCccCC--CCCCcccCC-CCCCCCCCCeeEEEEEecCC
Q 022229 201 RRTAGLNNAPLCMWS--SSPPLELKG-VPSETLSANAGFVTFVIFPR 244 (300)
Q Consensus 201 Rr~~~~~~APqVl~s--~~PPlEl~~-~~~~~~~~n~gyvTFvLFpR 244 (300)
++.+.+|..+ .+-|+-|+= ++ +.||++|.|=||
T Consensus 209 -----~~~s~~V~i~~~~~~Pl~l~~~i~------~~g~~~y~laPr 244 (245)
T 3fds_D 209 -----RRASDSMELYFGSQIPLKLRFKLP------QEGYGDFYIAPR 244 (245)
T ss_dssp -----GGTCSEEEEEECTTSCEEEEEECS------TTCEEEEEECCC
T ss_pred -----cccCCEEEEEecCCccEEEEEEeC------CCeEEEEEEeec
Confidence 4557788544 566887762 22 368999999997
No 8
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=52.62 E-value=14 Score=32.01 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=31.0
Q ss_pred ceEEEEEeeCCCCCccccccCCCchHHHHHHHhhcccccccCCCCCCcceEEEecCCCC
Q 022229 50 HIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKL 108 (300)
Q Consensus 50 ~~l~lSislk~~~~~~l~~~~l~~G~~e~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~l 108 (300)
|-+.|||.+|-. +++ ...|-+--.-+|..-=+.+....-.|=+|||+|.+|.-..+
T Consensus 68 NSvRvSi~ikq~--Dei-E~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~h~ 123 (168)
T 1k8k_F 68 NSVRVSIAVKQA--DEI-EKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHT 123 (168)
T ss_dssp SEEEEEEECCCC--SHH-HHHHHHHHHHHHHHTTTTSTTBCSSCCTTCSEEEEEEHHHH
T ss_pred ceEEEEEEEccc--ChH-HHHHHHHHHHHHHhcccceEEeeeCCcCCccchhhhhhhhH
Confidence 678899988831 121 10011222222222223343334578899999999987665
No 9
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=40.20 E-value=59 Score=28.60 Aligned_cols=100 Identities=23% Similarity=0.404 Sum_probs=63.5
Q ss_pred hchHHHHHHHhcccccccccCcceEEeccCCceEEEeecC--CeeEEEee------ceec---CCcchhhhHHHHHHHHH
Q 022229 131 GAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQA--EKVTVVFP------MRFN---DSIDTVLATSFLQEFVE 199 (300)
Q Consensus 131 aApF~~~f~~l~~~~~~~~~~~~~~I~YR~~E~iyi~~~~--DrVTViFs------t~F~---D~~D~vigkvFLQEFvd 199 (300)
+..|.++.+.++.-. +.+.|.--+ +.+.+..++ +++.+.++ ..++ ++....|.--+|.+|..
T Consensus 138 s~~f~~~i~~~~~~s------d~V~i~~~~-~~v~~ss~gd~G~~~~~l~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~K 210 (259)
T 3lx2_A 138 AGALKRAVKAAKLVS------DSIYFMATP-EKLTFKAEGNDSEVRTVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILR 210 (259)
T ss_dssp HHHHHHHHHHHHHHC------SEEEEEECS-SCEEEEEECSSCEEEEEECTTSTTEEEEEESSSCEEEEEEHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC------CEEEEEEEC-CEEEEEEEecCcEEEEEEcCCCCceEEEEecCceEEEEEEHHHHHhhhc
Confidence 555666665443211 245565544 467777665 46777775 3455 67778888888887775
Q ss_pred HhhhcCCCCCCCcc--CCCCCCcccC-CCCCCCCCCCeeEEEEEecCCCCCC
Q 022229 200 ARRTAGLNNAPLCM--WSSSPPLELK-GVPSETLSANAGFVTFVIFPRHVEG 248 (300)
Q Consensus 200 aRr~~~~~~APqVl--~s~~PPlEl~-~~~~~~~~~n~gyvTFvLFpRH~~~ 248 (300)
| ++.+.+|. |+.+-|+-|+ .+. +.||++|.|-||--.|
T Consensus 211 a-----~~~s~~V~l~~~~~~Pl~l~~~i~------~~g~~~y~laP~~~~~ 251 (259)
T 3lx2_A 211 S-----LADADEVIIRFGFDIPLLLKYMVR------DAGEVSFLIAPRVEEG 251 (259)
T ss_dssp S-----SCTTSEEEEEECTTSCEEEEEEET------TTEEEEEEECCCC---
T ss_pred c-----ccCCCeEEEEeCCCCCEEEEEEeC------CCeEEEEEEccccCCC
Confidence 5 55677885 4456788876 322 3689999999987655
No 10
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=36.50 E-value=55 Score=29.02 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=65.2
Q ss_pred hchHHHHHHHhcccccccccCcceEEeccCCceEEEeecCC--eeEEEeec---------eec--CCcchhhhHHHHHHH
Q 022229 131 GAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAE--KVTVVFPM---------RFN--DSIDTVLATSFLQEF 197 (300)
Q Consensus 131 aApF~~~f~~l~~~~~~~~~~~~~~I~YR~~E~iyi~~~~D--rVTViFst---------~F~--D~~D~vigkvFLQEF 197 (300)
++.|.++.+.++.-. . +.+.|.--+ +.+.+..++| ++.+.++. .|. ++....|.--+|..|
T Consensus 145 s~~f~~~i~~~~~~s--~---d~V~i~~~~-~~v~~ss~gd~G~~~~~l~~~~~~~~~~~~~~~~e~~~~~F~~~YL~~~ 218 (265)
T 3p91_A 145 SAEFLKITKDFSALG--D---DSITIGCTK-NEVTLTTKGAMCETCMTLSALENVDSNGLQIEHNKDVTASFALKQISEF 218 (265)
T ss_dssp HHHHHHHHHHHHHHC--C---SEEEEEECS-SEEEEEEECSSCEEEEEEEC-------CCEEEESSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--C---CEEEEEEEC-CEEEEEEEecCceEEEEEecCCCCCCceEEEEcCCcEEEEEEHHHHHHh
Confidence 566676665544211 0 256665554 4677777764 78888863 344 678888888899988
Q ss_pred HHHhhhcCCCCCCCcc--CCCCCCcccCCCCCCCCCCCeeEEEEEecCCCC
Q 022229 198 VEARRTAGLNNAPLCM--WSSSPPLELKGVPSETLSANAGFVTFVIFPRHV 246 (300)
Q Consensus 198 vdaRr~~~~~~APqVl--~s~~PPlEl~~~~~~~~~~n~gyvTFvLFpRH~ 246 (300)
..| .+-|.+|. ++.+-|+.|+= .. +.||++|.|=||==
T Consensus 219 ~Ka-----~~ls~~V~i~~~~~~Pl~l~~----~i--~~g~~~f~lAPri~ 258 (265)
T 3p91_A 219 AKS-----APLADNVKLSLSGQAPLIMEF----KG--EACVLKFYLAPKFD 258 (265)
T ss_dssp GGG-----GGGCSEEEEEECSSSCEEEEE----EE--TTEEEEEEECCBC-
T ss_pred hcc-----cccCCEEEEEeCCCccEEEEE----EE--CCEEEEEEEcCCCC
Confidence 855 44477885 44567888763 12 36899999999853
No 11
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=29.39 E-value=1.7e+02 Score=25.65 Aligned_cols=99 Identities=12% Similarity=0.215 Sum_probs=60.4
Q ss_pred HhhchHHHHHHHhcccccccccCcceEEeccCCceEEEeecCC--eeEEEe-------eceecCCcchhhhHHHHHHHHH
Q 022229 129 VLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAE--KVTVVF-------PMRFNDSIDTVLATSFLQEFVE 199 (300)
Q Consensus 129 ~laApF~~~f~~l~~~~~~~~~~~~~~I~YR~~E~iyi~~~~D--rVTViF-------st~F~D~~D~vigkvFLQEFvd 199 (300)
+-++.|+++.+.++.-. +.++|.--++ .+.+...+| ...+.+ +..-+++....|+--.|-.|..
T Consensus 138 m~s~~f~~~~~dl~~~s------d~v~i~~~~~-~~~f~~~gd~~~~~~~~~~~~~l~~~~~~~~~~~~fsl~yL~~~~K 210 (249)
T 3fds_C 138 TDESVLNVIAADVTLVG------EEMRISTEED-KIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVK 210 (249)
T ss_dssp ECHHHHHHHHHHHHHHC------SEEEEEEETT-EEEEEEEETTEEEEEEEEETBEESEEEESSCCEEEEEHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHhC------CEEEEEEECC-EEEEEEEecCcEEEEEEcCCCCcEEEEcCCceEEEEEHHHHHHHHh
Confidence 44778888887665321 2344444333 344444444 333333 1223566777788888888886
Q ss_pred -HhhhcCCCCCCCcc--CCCCCCcccCCCCCCCCCCCeeEEEEEecCC
Q 022229 200 -ARRTAGLNNAPLCM--WSSSPPLELKGVPSETLSANAGFVTFVIFPR 244 (300)
Q Consensus 200 -aRr~~~~~~APqVl--~s~~PPlEl~~~~~~~~~~n~gyvTFvLFpR 244 (300)
| .+-|.+|. ++.+-|+.|+=. .+ +.|||+|.|=||
T Consensus 211 ~a-----~~ls~~V~i~~~~~~Pl~l~y~----i~-~~G~l~f~lAPr 248 (249)
T 3fds_C 211 GL-----RGFSAPTMVSFGENLPMKIDVE----AV-SGGHMIFWIAPR 248 (249)
T ss_dssp TT-----TTCCSCEEEEECTTCCEEEEEE----CT-TSCEEEEEECCB
T ss_pred hh-----cccCCEEEEEecCCcCEEEEEE----eC-CCcEEEEEEecc
Confidence 6 45677875 446889987652 11 248999999997
No 12
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=23.67 E-value=41 Score=19.84 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhcCCCCCC
Q 022229 191 TSFLQEFVEARRTAGLNNAP 210 (300)
Q Consensus 191 kvFLQEFvdaRr~~~~~~AP 210 (300)
|.=||-|.+-||.....+||
T Consensus 2 k~SLqRFleKRk~R~~~~~P 21 (22)
T 3ogk_Q 2 RASLHRFLEKRKDRVTSKAP 21 (26)
T ss_pred chhHHHHHHHHHHHhhccCC
Confidence 34589999999964344555
No 13
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=22.44 E-value=2e+02 Score=22.48 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=21.7
Q ss_pred HHHHHHHhhcccccccCCCCCCcceEEEecCCCCCC
Q 022229 75 AIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPP 110 (300)
Q Consensus 75 ~~e~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~ 110 (300)
+.++++...|. +.+...+..|..+++.+.+..-.+
T Consensus 122 v~~~~~~~~G~-i~i~~~~~~Gt~~~i~lP~~~~~~ 156 (177)
T 3sl2_A 122 AKEMVQAHGGD-IWADSIEGKGTTITFTLPYKEEQE 156 (177)
T ss_dssp HHHHHHHTTCC-EEEEEETTTEEEEEEEEEEEC---
T ss_pred HHHHHHHcCCE-EEEEecCCCCeEEEEEEeCCCCcc
Confidence 55666555555 444455677899999998876543
No 14
>2hew_F Tumor necrosis factor ligand superfamily member 4; trimer, TNFSF, cytokine; HET: NAG; 1.45A {Mus musculus} SCOP: b.22.1.1 PDB: 2hey_F
Probab=21.38 E-value=72 Score=26.93 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=22.2
Q ss_pred cceEEeccCCce-EEEeecC--Ce--eEEEeeceecCC
Q 022229 152 QLLALVHRPKES-FFLIPQA--EK--VTVVFPMRFNDS 184 (300)
Q Consensus 152 ~~~~I~YR~~E~-iyi~~~~--Dr--VTViFst~F~D~ 184 (300)
-.+.+|||++|. +||..-+ .+ -+++-+..|+|+
T Consensus 68 ~sI~l~YRk~~~plf~~~L~~~~~V~sv~Va~L~fKDk 105 (152)
T 2hew_F 68 VKIDLHFREDHNPISIPMLNDGRRIVFTVVASLAFKDK 105 (152)
T ss_dssp CCEEEECCTTSCCEEECCCTTSSEEEEEEEEEECTTCE
T ss_pred cEEEEEEecCCCccchhhhhccceEeEEEEEEEeeccE
Confidence 358999999776 7643322 22 356778899983
No 15
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=20.57 E-value=71 Score=25.86 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=22.0
Q ss_pred cCCccccce--E--EeecCceEEEEecCCCCCc
Q 022229 22 VDKATEVDY--H--WVEFDDVRYHVQVTMKNPH 50 (300)
Q Consensus 22 ~~kp~~~d~--~--~~DFD~v~yhis~~~~~k~ 50 (300)
.+|++.+|. . -.+|||+.||+.+-.+||+
T Consensus 101 dekgeqidinsqfnsfeydgisfhlknmredks 133 (146)
T 4a4y_A 101 DEKGEQIDINSQFNSFEYDGISFHLKNMREDKS 133 (146)
T ss_dssp CTTSCEECCCSSSSEEEETTEEEEEEECCCCCS
T ss_pred cccCcEeeccccccceeecceEeehhccccccc
Confidence 456666665 2 3689999999999888875
No 16
>2hev_F Tumor necrosis factor ligand superfamily member 4; cytokine, receptor-ligand complex, TNFSF, TNFRSF; HET: NAG; 2.41A {Homo sapiens} SCOP: b.22.1.1
Probab=20.22 E-value=64 Score=26.87 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=22.5
Q ss_pred cceEEeccCCce-EEEeecCCe--eEEEeeceecCC
Q 022229 152 QLLALVHRPKES-FFLIPQAEK--VTVVFPMRFNDS 184 (300)
Q Consensus 152 ~~~~I~YR~~E~-iyi~~~~Dr--VTViFst~F~D~ 184 (300)
-.+.+|||++|. ++.-.+..+ -+++-+..|+|+
T Consensus 67 ~~I~l~YRk~~~p~~~L~~~~~v~s~~Va~L~fKDk 102 (137)
T 2hev_F 67 VDISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDK 102 (137)
T ss_dssp EEEEEESSTTSCCSEEEEEEEEEEEEEEEEECTTCE
T ss_pred cEEEEEEecCCCchhhhccceeEEEEEEEEEeeccE
Confidence 358999999765 654443333 356778899984
Done!