BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022230
         (300 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P8C|F Chain F, Structure And Control Of The Actin Regulatory Wave Complex
          Length = 159

 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)

Query: 40  LYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVST 99
           L   A+YCE +Y+ S  KQ  L+  K Y  ++L +    + T+A  +  +L+ Q S +  
Sbjct: 27  LERVADYCENNYIQSADKQRALEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRR 86

Query: 100 MELRVSCMNQKLLTCQTYSNKEGLRQQQLLAF---IPRHHKHYILPNSVNKKVHFSPRVP 156
           ME  ++ ++Q   T   +  K   R+  +L       R HK  I P ++ + V +  R P
Sbjct: 87  MESSINHISQ---TVDIHKEKVARREIGILTTNKNTSRTHK-IIAPANLERPVRY-IRKP 141

Query: 157 TD 158
            D
Sbjct: 142 ID 143


>pdb|1A4F|A Chain A, Bar-Headed Goose Hemoglobin (Oxy Form)
 pdb|1HV4|A Chain A, Crystal Structure Analysis Of Bar-Head Goose Hemoglobin
           (Deoxy Form)
 pdb|1HV4|C Chain C, Crystal Structure Analysis Of Bar-Head Goose Hemoglobin
           (Deoxy Form)
 pdb|1HV4|E Chain E, Crystal Structure Analysis Of Bar-Head Goose Hemoglobin
           (Deoxy Form)
 pdb|1HV4|G Chain G, Crystal Structure Analysis Of Bar-Head Goose Hemoglobin
           (Deoxy Form)
          Length = 141

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 69  VRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLL 112
           V ALV AV+H+  +A  L+ L     SD+   +LRV  +N K L
Sbjct: 63  VAALVEAVNHIDDIAGALSKL-----SDLHAQKLRVDPVNFKFL 101


>pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase,
           Putative, From Plasmodium Falciparum (Pf13_0052)
          Length = 201

 Score = 27.7 bits (60), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 21/110 (19%), Positives = 55/110 (50%), Gaps = 21/110 (19%)

Query: 8   LGNRAMTFDEVSMERSKSFVKAL----QELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDN 63
           +G    ++ +V +ER+K++   +    +++ +  P +Y         ++  E  +  ++N
Sbjct: 29  IGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVY---------FIQGEIGKDNMNN 79

Query: 64  LKDYAVRALVNAVDHLG--TVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111
           +K+      +N +D++   +V YKL ++L+ +  D+   +  V C+  K+
Sbjct: 80  IKN------INYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKI 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.126    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,662,975
Number of Sequences: 62578
Number of extensions: 276220
Number of successful extensions: 826
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 6
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)