Query 022230
Match_columns 300
No_of_seqs 112 out of 126
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 16:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022230.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022230hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2etsa1 a.24.26.1 (A:1-110) Hy 27.8 50 0.0036 24.9 5.5 63 24-92 40-108 (110)
2 d2c0sa1 a.30.7.1 (A:1-57) Hypo 25.2 30 0.0022 23.8 3.3 38 84-121 4-41 (57)
3 d1fs1b2 d.42.1.1 (B:2-68) Cycl 21.6 24 0.0017 23.5 2.2 36 14-49 14-57 (61)
4 d2p06a1 a.204.1.3 (A:1-84) Hyp 18.7 70 0.0051 22.7 4.4 15 34-48 61-75 (84)
5 d2jeka1 a.255.1.1 (A:6-145) Hy 18.4 37 0.0027 26.9 3.0 40 15-54 5-71 (140)
6 d1t3ua_ d.244.1.1 (A:) ZapA ho 17.2 43 0.0032 23.1 2.9 65 39-111 22-86 (92)
7 d2clya1 f.52.1.1 (A:79-183) AT 16.4 1.3E+02 0.0094 22.3 5.7 56 55-111 9-67 (105)
8 d2efka1 a.238.1.4 (A:10-288) C 15.3 2.3E+02 0.017 21.5 9.7 39 82-120 89-127 (279)
9 d1ydxa1 d.287.1.2 (A:1-193) Bi 14.8 76 0.0056 23.0 4.0 42 78-119 148-189 (193)
10 d1nexa2 d.42.1.1 (A:4-103) Cen 13.2 28 0.002 23.7 0.8 17 33-49 48-65 (72)
No 1
>d2etsa1 a.24.26.1 (A:1-110) Hypothetical protein MW1337 {Staphylococcus aureus [TaxId: 1280]}
Probab=27.82 E-value=50 Score=24.92 Aligned_cols=63 Identities=22% Similarity=0.438 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHH
Q 022230 24 KSFVKALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVN------AVDHLGTVAYKLTDLLEQ 92 (300)
Q Consensus 24 ~~F~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaS------VayhIgtvA~kll~LLd~ 92 (300)
..++..+.++.....+. -.-.|++..+=..+.|+.+..++||-.. ..+++.+|.|.|..++|.
T Consensus 40 d~vd~~l~~w~~~a~~~------i~p~y~h~~Qie~~~en~e~lsVq~f~~~ts~KrF~e~~kSv~YtL~~i~d~ 108 (110)
T d2etsa1 40 EHIDSILNEIKLHREFI------IEVPYMNSRKFELLIANIEQLSVECHFKRTSRKLFIEKLKSVQYDLQNILDG 108 (110)
T ss_dssp HHHHHHHHHHHHTHHHH------TTSTTCCHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh------cCcccCCHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 44556666776665554 3799999999999999999999998764 678999999999999986
No 2
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=25.18 E-value=30 Score=23.80 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhhhhhhhhhhhhh
Q 022230 84 YKLTDLLEQQTSDVSTMELRVSCMNQKLLTCQTYSNKE 121 (300)
Q Consensus 84 ~kll~LLd~Q~~evs~mE~rVs~I~Qrv~tc~~~ihkE 121 (300)
.+|.++++.+-.|+-.+-.+--.-.|.|+.|-+.+|+-
T Consensus 4 ~~L~~~IE~KK~eLi~Lv~~YGf~h~kvl~~SQELD~L 41 (57)
T d2c0sa1 4 TKLNDRIEAKKKELIYLVEKYGFTHHKVISFSQELDRL 41 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999973
No 3
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.61 E-value=24 Score=23.55 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=23.9
Q ss_pred chhhHhhhhhhhHHHHHHH-------HHhhhHH-HHHHHHHHHH
Q 022230 14 TFDEVSMERSKSFVKALQE-------LKNLRPQ-LYSAAEYCEK 49 (300)
Q Consensus 14 ~~~E~~m~~~~~F~~aL~E-------Lk~lR~q-L~~aAdYCE~ 49 (300)
.+++.-..+|..+...+.+ |++-.+. |.+|.|||+.
T Consensus 14 ~v~~~~a~~S~tI~~ml~~~~~~~Ipl~~V~s~iL~kVieyc~~ 57 (61)
T d1fs1b2 14 EVDVEIAKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTH 57 (61)
T ss_dssp EEEGGGGGTCHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHH
T ss_pred EecHHHHHHhHHHHHHHhcCCCCCcccCCcCHHHHHHHHHHHHH
Confidence 3444555566666666666 4444444 9999999995
No 4
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=18.65 E-value=70 Score=22.71 Aligned_cols=15 Identities=40% Similarity=0.826 Sum_probs=11.4
Q ss_pred HhhhHHHHHHHHHHH
Q 022230 34 KNLRPQLYSAAEYCE 48 (300)
Q Consensus 34 k~lR~qL~~aAdYCE 48 (300)
.|+|..|..||+||-
T Consensus 61 enlrdelldvanfcm 75 (84)
T d2p06a1 61 ENLRDELLDVANFCM 75 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666899999995
No 5
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=18.37 E-value=37 Score=26.89 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=30.0
Q ss_pred hhhHhhhhhhhHHHHHHHHHhhhHH---------------------------HHHHHHHHHHhcCCc
Q 022230 15 FDEVSMERSKSFVKALQELKNLRPQ---------------------------LYSAAEYCEKSYLHS 54 (300)
Q Consensus 15 ~~E~~m~~~~~F~~aL~ELk~lR~q---------------------------L~~aAdYCE~nYl~s 54 (300)
++-..--|...|..+|.||+++|++ |..|.+|...-.|..
T Consensus 5 L~RFv~AQ~~~y~~al~EL~~G~K~SHWMWfIFPQl~GLG~S~~a~~YaI~sl~EA~AYL~HPvLG~ 71 (140)
T d2jeka1 5 LKRFVYAQAPVYRSVVEELRAGRKRGHWMWFVFPQLRGLGSSPLAVRYGISSLEEAQAYLQHDLLGP 71 (140)
T ss_dssp THHHHHHHTTTHHHHHHHHHTTCCCSSCHHHHSCCBTTSCCSHHHHHTSBCSHHHHHHHHHSTTHHH
T ss_pred HHHHHHHhHhhHHHHHHHHHcCCCCCceeeehhHhhcccCcCHHHHHhccCCHHHHHHHHhChHhHH
Confidence 3333444557899999999999997 788888887766654
No 6
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.19 E-value=43 Score=23.10 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022230 39 QLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 39 qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
.|..||+|++...-+-.++-..++..+ .++=|-.++||.+ +++=+........++.+|..|.+++
T Consensus 22 ~l~~aA~~ln~k~~~l~~~~~~~~~~~-~lvmaaLnla~e~-------~~~~~~~~~~~~~~~~~i~~L~~~i 86 (92)
T d1t3ua_ 22 NLESAARYLDGKMREIRSSGKVIGADR-VAVMAALNITHDL-------LHRKERLDQESSSTRERVRELLDRV 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSCSHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888766644322222233222 2333444444443 3333332333444555565555555
No 7
>d2clya1 f.52.1.1 (A:79-183) ATP synthase subunit b, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.43 E-value=1.3e+02 Score=22.27 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022230 55 EQKQMVLDNLKDYAVRALVNAVDHLGTV---AYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtv---A~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
+++...|++.++=.+.+|-..+++...+ +.....|+|. .-+--.|++.+.+.+|..
T Consensus 9 ~~~~~~l~~~r~~~i~~l~~~Ie~~k~~q~~~~~~~~Lfda-~kEnvalqlEa~yrerl~ 67 (105)
T d2clya1 9 EQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDV-QRNNIAMALEVTYRERLH 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4455677777777777776655554443 3344455665 455556777777777766
No 8
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.32 E-value=2.3e+02 Score=21.47 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhhhhhhh
Q 022230 82 VAYKLTDLLEQQTSDVSTMELRVSCMNQKLLTCQTYSNK 120 (300)
Q Consensus 82 vA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~tc~~~ihk 120 (300)
|...|..++..+......+...+..+...+..+...+.+
T Consensus 89 i~~~l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k 127 (279)
T d2efka1 89 VCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLEN 127 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666666666665555444444433
No 9
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=14.77 E-value=76 Score=22.96 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhhhhhh
Q 022230 78 HLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLTCQTYSN 119 (300)
Q Consensus 78 hIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~tc~~~ih 119 (300)
.|+.+-..+..+++....++..++.....|-|.++++....-
T Consensus 148 ~I~~~l~~ld~~i~~~~~~i~~l~~~~~~ll~~lft~~~~~~ 189 (193)
T d1ydxa1 148 AIANTLSVFDERLENLASLIEINRKLRDEYAHKLFSLDEAFL 189 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChhhh
Confidence 344444556777777777888888888888888877665443
No 10
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.20 E-value=28 Score=23.71 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=12.2
Q ss_pred HHhhhHH-HHHHHHHHHH
Q 022230 33 LKNLRPQ-LYSAAEYCEK 49 (300)
Q Consensus 33 Lk~lR~q-L~~aAdYCE~ 49 (300)
|++-.+. |.+|.+||+.
T Consensus 48 l~~V~s~iL~kVieyc~~ 65 (72)
T d1nexa2 48 VPNVRSSVLQKVIEWAEH 65 (72)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 3344444 9999999974
Done!