BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022231
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8F7K3|RIMP_LEPIN Ribosome maturation factor RimP OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=rimP
PE=3 SV=1
Length = 162
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 10/106 (9%)
Query: 142 IKLYAFKATPR---GYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPD-D 197
+KLY+ K R + V LD L + YG S+ E E S++ K++L+ + PD D
Sbjct: 20 VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERIS-----PDLD 74
Query: 198 LALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVF 243
L+VS+ GAER L +P DL RF+ +PI + + ++S+ +E+ G+F
Sbjct: 75 YTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEESE-KEQEGIF 119
>sp|Q72NX1|RIMP_LEPIC Ribosome maturation factor RimP OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=rimP PE=3 SV=1
Length = 162
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 10/106 (9%)
Query: 142 IKLYAFKATPR---GYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPD-D 197
+KLY+ K R + V LD L + YG S+ E E S++ K++L+ + PD D
Sbjct: 20 VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERIS-----PDLD 74
Query: 198 LALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVF 243
L+VS+ GAER L +P DL RF+ +PI + + ++S+ +E+ G+F
Sbjct: 75 YTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEESE-KEQEGIF 119
>sp|Q04ZJ3|RIMP_LEPBL Ribosome maturation factor RimP OS=Leptospira borgpetersenii
serovar Hardjo-bovis (strain L550) GN=rimP PE=3 SV=1
Length = 162
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 71/125 (56%), Gaps = 15/125 (12%)
Query: 128 LSIAHEVLLQLGDD-----IKLYAFKATPR---GYVYVRLDKLSNKYGCPSMEELESYSQ 179
++++ E + + DD +KLY+ K R + V LD L + YG S+ E E S+
Sbjct: 1 MTVSREEISTILDDALFLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSR 60
Query: 180 EYKKKLDEVGALGEIPD-DLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSRE 238
+ K++L+ + PD D L+VS+ GAER L +P+D+ RF+ +P+ + + +S+ +
Sbjct: 61 KLKEELERIS-----PDLDFTLKVSSAGAERKLHLPEDIDRFRGIPVRLVFRSGESE-KN 114
Query: 239 KTGVF 243
+ G+F
Sbjct: 115 QEGIF 119
>sp|Q04U33|RIMP_LEPBJ Ribosome maturation factor RimP OS=Leptospira borgpetersenii
serovar Hardjo-bovis (strain JB197) GN=rimP PE=3 SV=1
Length = 162
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 71/125 (56%), Gaps = 15/125 (12%)
Query: 128 LSIAHEVLLQLGDD-----IKLYAFKATPR---GYVYVRLDKLSNKYGCPSMEELESYSQ 179
++++ E + + DD +KLY+ K R + V LD L + YG S+ E E S+
Sbjct: 1 MTVSREEISTILDDALFLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSR 60
Query: 180 EYKKKLDEVGALGEIPD-DLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSRE 238
+ K++L+ + PD D L+VS+ GAER L +P+D+ RF+ +P+ + + +S+ +
Sbjct: 61 KLKEELERIS-----PDLDFTLKVSSAGAERKLHLPEDIDRFRGIPVRLVFRSGESE-KN 114
Query: 239 KTGVF 243
+ G+F
Sbjct: 115 QEGIF 119
>sp|B0SQH2|RIMP_LEPBP Ribosome maturation factor RimP OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris) GN=rimP PE=3 SV=1
Length = 162
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Query: 129 SIAHEVLLQLGDDIKLYAFKATPR---GYVYVRLDKLSNKYGCPSMEELESYSQEYKKKL 185
+I +L L + L++ + R + + LD L++K G S+E+ E+ S+ K++L
Sbjct: 7 NIRELILRVLAPPLALFSLQVQNRKNHALIEIELDHLTDKTGSASLEDCETVSRRLKEEL 66
Query: 186 DEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITV 227
D+ G D L+VS+ GAER+L++P+DL RF+ + + +
Sbjct: 67 DQWGE----EFDFTLQVSSAGAERVLRLPEDLIRFQGLLVKL 104
>sp|B0SH16|RIMP_LEPBA Ribosome maturation factor RimP OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames) GN=rimP PE=3 SV=1
Length = 162
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Query: 129 SIAHEVLLQLGDDIKLYAFKATPR---GYVYVRLDKLSNKYGCPSMEELESYSQEYKKKL 185
+I +L L + L++ + R + + LD L++K G S+E+ E+ S+ K++L
Sbjct: 7 NIRELILRVLAPPLALFSLQVQNRKNHALIEIELDHLTDKTGSASLEDCETVSRRLKEEL 66
Query: 186 DEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITV 227
D+ G D L+VS+ GAER+L++P+DL RF+ + + +
Sbjct: 67 DQWGE----EFDFTLQVSSAGAERVLRLPEDLIRFQGLLVKL 104
>sp|Q5N0A8|RIMP_SYNP6 Ribosome maturation factor RimP OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=rimP PE=3 SV=1
Length = 153
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 138 LGDDIKLYAFKA---TPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEI 194
+ DD+ L +A T + +RLD + ++ G +E+ E S+ ++ LDE I
Sbjct: 16 IADDLDLEVVQAVFHTNQSPPILRLD-IRSRVGDTGLEDCERMSRSFELALDEANI---I 71
Query: 195 PDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFL 244
PD LE+S+PG L+ D FK P+ V + D+ E+ G L
Sbjct: 72 PDAYVLEISSPGLSDTLESDRDFLSFKGFPVQVTSRSPNDDTVEQQGTLL 121
>sp|Q31LL6|RIMP_SYNE7 Ribosome maturation factor RimP OS=Synechococcus elongatus (strain
PCC 7942) GN=rimP PE=3 SV=1
Length = 153
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 138 LGDDIKLYAFKA---TPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEI 194
+ DD+ L +A T + +RLD + ++ G +E+ E S+ ++ LDE I
Sbjct: 16 IADDLDLEVVQAVFHTNQSPPILRLD-IRSRVGDTGLEDCERMSRSFELALDEANI---I 71
Query: 195 PDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFL 244
PD LE+S+PG L+ D FK P+ V + D+ E+ G L
Sbjct: 72 PDAYVLEISSPGLSDTLESDRDFLSFKGFPVQVTSRSPNDDTVEQQGTLL 121
>sp|B1I359|RIMP_DESAP Ribosome maturation factor RimP OS=Desulforudis audaxviator (strain
MP104C) GN=rimP PE=3 SV=1
Length = 154
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 152 RGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERML 211
R Y+ V LDK G ++++ E+ S+E + LD+V IP LEVS+PG ER L
Sbjct: 36 RRYLRVFLDK----PGGINLDDCEAVSRELDRALDDVDF---IPHSYVLEVSSPGLERPL 88
Query: 212 KVPDDLGRFK 221
K +D RFK
Sbjct: 89 KRAEDYVRFK 98
>sp|Q8FPA4|RIMP_COREF Ribosome maturation factor RimP OS=Corynebacterium efficiens
(strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC
100395) GN=rimP PE=3 SV=2
Length = 182
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 144 LYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIP--DDLALE 201
L KA P+ V ++LD S P ++ LE SQE + D A GE+ LE
Sbjct: 27 LRVTKAGPKSTVAIKLDSDSR----PDLDLLEVVSQEIGELFDAAEARGELSFGAGYLLE 82
Query: 202 VSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSR------EKTGVFLLDSIEMDSEIC 255
VSTPG + L P R + +++ + + +R E+T V L++ + +
Sbjct: 83 VSTPGVDMPLTQPRHWRRNRTRLVSLDVDGKKRIARIGALNAEETAVILIERNKKALSVT 142
Query: 256 VWKLAD 261
V +LA+
Sbjct: 143 VLELAN 148
>sp|B0JU70|RIMP_MICAN Ribosome maturation factor RimP OS=Microcystis aeruginosa (strain
NIES-843) GN=rimP PE=3 SV=1
Length = 156
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 128 LSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDE 187
L +A + LG ++ F+ R V +R+D + N G +E+ E S+ + LD
Sbjct: 10 LHLAIPIAENLGLEVVDIVFQTNKRPPV-LRVD-IRNLAGDTGLEDCEQMSRALETALDS 67
Query: 188 VGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTG 241
L P LE+S+PG R L + FK P+ V +D +E G
Sbjct: 68 QEIL---PGAYVLEISSPGISRQLSSEREFQSFKGFPVIVTGQDSQGKPQEWRG 118
>sp|B8CW69|RIMP_HALOH Ribosome maturation factor RimP OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=rimP PE=3 SV=1
Length = 159
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 162 LSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRF 220
+ N G +++ E+ S+ +KLDEV + E LEVS+PG ER LK +D RF
Sbjct: 41 IENPEGEVTLDHCENVSKNLDEKLDEVDPIQE---SYILEVSSPGIERPLKKKEDFDRF 96
>sp|A4QEZ5|RIMP_CORGB Ribosome maturation factor RimP OS=Corynebacterium glutamicum
(strain R) GN=rimP PE=3 SV=1
Length = 178
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 144 LYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIP--DDLALE 201
L KA P+ V +++D S P +++LE +SQE + D GE+ LE
Sbjct: 27 LKVTKAGPKSAVAIKVDSDSR----PDLDQLEVFSQEIGELFDAAEQRGELNFGAGYTLE 82
Query: 202 VSTPGAERMLKVP 214
VSTPG + L +P
Sbjct: 83 VSTPGVDNPLTLP 95
>sp|Q8NP37|RIMP_CORGL Ribosome maturation factor RimP OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=rimP PE=3 SV=1
Length = 178
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 144 LYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIP--DDLALE 201
L KA P+ V +++D S P +++LE +SQE + D GE+ LE
Sbjct: 27 LKVTKAGPKSAVAIKVDSDSR----PDLDQLEVFSQEIGELFDAAEQRGELNFGAGYTLE 82
Query: 202 VSTPGAERMLKVP 214
VSTPG + L +P
Sbjct: 83 VSTPGVDNPLTLP 95
>sp|C5D9C5|RIMP_GEOSW Ribosome maturation factor RimP OS=Geobacillus sp. (strain WCH70)
GN=rimP PE=3 SV=1
Length = 157
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 171 MEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGR 219
+E+ S++ +KLDEV IP + LEVS+PGAER LK P D +
Sbjct: 50 IEQCGMVSEKLSEKLDEVDP---IPHNYFLEVSSPGAERPLKKPKDFTK 95
>sp|A5GF83|RIMP_GEOUR Ribosome maturation factor RimP OS=Geobacter uraniireducens (strain
Rf4) GN=rimP PE=3 SV=1
Length = 159
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 126 RALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKL 185
R +A +V+ LG ++ +K R V L +K G ++++ S S+E + L
Sbjct: 9 RVTVLAEQVISSLGMELVDLEYKREGREMV---LRLFVDKEGGVNLDDCASVSRELSEVL 65
Query: 186 DEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITV-CYEDQDSDSREKTGVFL 244
D + E +LEVS+PG +R LK +D RFK + + +E D+ K FL
Sbjct: 66 DVEDVISE---HYSLEVSSPGIDRPLKKVEDFQRFKGRLVKIRTFEPLPDDAGNKRKTFL 122
Query: 245 LDSIEMDSEICVWKLADVKENRDPQEK 271
+ +++ + + L + + P EK
Sbjct: 123 GELKGIENGVVLVALKEGQNAAIPFEK 149
>sp|B1WZP0|RIMP_CYAA5 Ribosome maturation factor RimP OS=Cyanothece sp. (strain ATCC
51142) GN=rimP PE=3 SV=1
Length = 151
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 122 PWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEY 181
P + + +A ++ ++G D+ F+ R V +R+D + N S+ + E S+
Sbjct: 4 PLIPQIIDLATPIVEEMGLDVVEVVFQTNKRPPV-LRVD-IRNPASDTSLNDCEQVSRAL 61
Query: 182 KKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTG 241
+ LDE + P LE+S+PG R L D FK + + D +E G
Sbjct: 62 EAVLDETAIM---PGAYVLEISSPGISRYLNSERDFIAFKGFEVNIATNPPYKDKKEWRG 118
>sp|Q8YQJ5|RIMP_NOSS1 Ribosome maturation factor RimP OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rimP PE=3 SV=1
Length = 153
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 122 PWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEY 181
P + A+ +A QLG ++ F R V +R+D + N +++ E S+
Sbjct: 8 PITDLAIPVAE----QLGLEVVGIVFHTNQRPPV-LRID-IRNPQQDTGLDDCERMSRAL 61
Query: 182 KKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTG 241
+ LD A IPD LEVS+PG R L + FK P+ V + +E G
Sbjct: 62 EAALD---ATEIIPDAYVLEVSSPGISRQLVTDREFISFKGFPVIVSTSPPHEEQQEWIG 118
Query: 242 VFL 244
+
Sbjct: 119 QLI 121
>sp|Q03QT1|RIMP_LACBA Ribosome maturation factor RimP OS=Lactobacillus brevis (strain
ATCC 367 / JCM 1170) GN=rimP PE=3 SV=1
Length = 157
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 156 YVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPD 215
Y+RL +K G ++EE S E +K+D + IP LEVS+PGAER LK P
Sbjct: 36 YLRL--YIDKPGGINIEECALVSDEVSEKMDALDP-DPIPQAYFLEVSSPGAERPLKKPA 92
Query: 216 DLGRFKEMPITVCYEDQDSDSREKTGVFL-LDSIEMDSEI 254
D + I V + +S+ G L L + +D E+
Sbjct: 93 DFEKAVGDYIHVSLYQKIGNSKVYEGTLLSLTADSLDLEV 132
>sp|Q8RHJ4|RIMP_FUSNN Ribosome maturation factor RimP OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=rimP PE=3 SV=1
Length = 156
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 153 GYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLK 212
GY YVR+ + N G ++E+ S + + K++E+ I LEVS+PG ER LK
Sbjct: 36 GYWYVRI-FIENLNGDLNIEDCSKLSSKIEDKVEEL-----IEHKFFLEVSSPGLERPLK 89
Query: 213 VPDDLGRFKEMPITVCYEDQDSDSRE 238
+D RF IT+ + + D ++
Sbjct: 90 KLEDYTRFIGEKITLHLKHKLDDKKQ 115
>sp|Q5L0J2|RIMP_GEOKA Ribosome maturation factor RimP OS=Geobacillus kaustophilus (strain
HTA426) GN=rimP PE=3 SV=1
Length = 157
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 171 MEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGR 219
+E+ + S++ +KLDEV IP + LEVS+PGAER LK D +
Sbjct: 50 IEQCGAVSEKLSEKLDEVDP---IPHNYFLEVSSPGAERPLKKAKDFAK 95
>sp|Q3MBZ3|RIMP_ANAVT Ribosome maturation factor RimP OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=rimP PE=3 SV=1
Length = 153
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 122 PWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEY 181
P + A+ +A QLG ++ F R V +R+D + N +++ E S+
Sbjct: 8 PITDLAIPVAE----QLGLEVVGIVFHTNQRPPV-LRVD-IRNPQQDTGLDDCERMSRAL 61
Query: 182 KKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTG 241
+ LD A IPD LEVS+PG R L + FK P+ V +E G
Sbjct: 62 EAALD---ATEIIPDAYVLEVSSPGISRQLVTDREFISFKGFPVIVSTSPPHEGQQEWIG 118
Query: 242 VFL 244
+
Sbjct: 119 QLI 121
>sp|Q03FS7|RIMP_PEDPA Ribosome maturation factor RimP OS=Pediococcus pentosaceus (strain
ATCC 25745 / 183-1w) GN=rimP PE=3 SV=1
Length = 158
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 164 NKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGR 219
+K G ++EE S E + LD IP LEVS+PGAER LK +DL R
Sbjct: 43 DKVGGINIEECAMVSDELSEILDAQDP-DPIPQAYFLEVSSPGAERPLKTKEDLTR 97
>sp|A6TRL1|RIMP_ALKMQ Ribosome maturation factor RimP OS=Alkaliphilus metalliredigens
(strain QYMF) GN=rimP PE=3 SV=1
Length = 152
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 15/126 (11%)
Query: 148 KATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGA 207
K P Y+ V +DK G ++++ + S+ KKLDE + E + LEVS+PG
Sbjct: 30 KEGPHKYLRVYIDK----PGGITLDDCQKVSEGLSKKLDEADPIVE---NYFLEVSSPGL 82
Query: 208 ERMLKVPDDLGRFK-EMPITVCYEDQDSD-SREKTGVFLLDSIEMDSEICVWKLADVKEN 265
+R LK D +FK EM YE D + E V L+D + V K+++ +E
Sbjct: 83 DRPLKREVDFLKFKGEMIELKLYEAIDGQKTIEGELVGLID------DKIVIKISETEEV 136
Query: 266 RDPQEK 271
P+EK
Sbjct: 137 EMPREK 142
>sp|A4J5X6|RIMP_DESRM Ribosome maturation factor RimP OS=Desulfotomaculum reducens
(strain MI-1) GN=rimP PE=3 SV=1
Length = 153
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 156 YVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPD 215
Y+R+ +K G +++ + S++ LDE+ +P LEVS+PG ER LK P
Sbjct: 38 YLRI--FIDKPGGIELDDCQGVSEKIDTLLDEIDP---VPQAYFLEVSSPGIERPLKKPQ 92
Query: 216 DLGRF 220
D +F
Sbjct: 93 DFEKF 97
>sp|B2G6V2|RIMP_LACRJ Ribosome maturation factor RimP OS=Lactobacillus reuteri (strain
JCM 1112) GN=rimP PE=3 SV=1
Length = 157
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 164 NKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGR 219
NK G ++E+ S E + LD V IP LEVS+PGAER LK +D R
Sbjct: 42 NKDGGITLEDCALVSDELSEALDNVEP-DPIPQAYFLEVSSPGAERPLKKEEDYQR 96
>sp|A5VJD6|RIMP_LACRD Ribosome maturation factor RimP OS=Lactobacillus reuteri (strain
DSM 20016) GN=rimP PE=3 SV=1
Length = 157
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 164 NKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGR 219
NK G ++E+ S E + LD V IP LEVS+PGAER LK +D R
Sbjct: 42 NKDGGITLEDCALVSDELSEALDNVEP-DPIPQAYFLEVSSPGAERPLKKEEDYQR 96
>sp|A9BCI2|RIMP_PROM4 Ribosome maturation factor RimP OS=Prochlorococcus marinus (strain
MIT 9211) GN=rimP PE=3 SV=2
Length = 155
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 168 CPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITV 227
C EL S + E K ++E LE+S+PG +L+ D FK PI V
Sbjct: 55 CAQFSELISETIELSKLINE---------PYLLEISSPGLGDLLQTDKDFKTFKGFPIEV 105
Query: 228 CYEDQDSDSREKTGVF 243
+++ ++ K+G+
Sbjct: 106 LFKNNENTKLTKSGLL 121
>sp|A5ILL0|RIMP_THEP1 Ribosome maturation factor RimP OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=rimP PE=3 SV=1
Length = 150
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 127 ALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLD 186
A IA E L++ D ++ RG+V + + N G S+ + E +S+E ++ LD
Sbjct: 14 AERIAEEQGLEIFD----VQYRRESRGWVLRII--IDNPVGYVSVRDCELFSREIERFLD 67
Query: 187 EVGALGEIPDDLALEVSTPGAERMLKVPDDLGRF 220
I LEVS+PG +R L+ P D RF
Sbjct: 68 REDL---IEHSYTLEVSSPGLDRPLRGPKDYVRF 98
>sp|A5D2U8|RIMP_PELTS Ribosome maturation factor RimP OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=rimP PE=3 SV=1
Length = 153
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 153 GYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLK 212
G Y+R+ +K G +E+ + S++ + LDE L IP LEVS+PG +R LK
Sbjct: 35 GRYYLRI--FIDKPGGVRIEDCQHVSEKIDRLLDE---LDPIPQSYFLEVSSPGIDRPLK 89
Query: 213 VPDDLGRF 220
D RF
Sbjct: 90 KAGDYIRF 97
>sp|B7K5I1|RIMP_CYAP8 Ribosome maturation factor RimP OS=Cyanothece sp. (strain PCC 8801)
GN=rimP PE=3 SV=1
Length = 153
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 122 PWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEY 181
P + +++A + G ++ F+ R V +R+D + N G S+++ E+ S+
Sbjct: 4 PLIPQIINLATPIAEDRGLEVVDVVFQTNKRPPV-LRVD-IRNSQGETSLDDCEAVSRAL 61
Query: 182 KKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTG 241
+ LDE +G LE+S+PG R L + FK + V E D +E G
Sbjct: 62 EAVLDESQVMG---GSYVLEISSPGISRQLHSDREFISFKGFAVIVTTEIPYLDHKEWRG 118
>sp|B7GG79|RIMP_ANOFW Ribosome maturation factor RimP OS=Anoxybacillus flavithermus
(strain DSM 21510 / WK1) GN=rimP PE=3 SV=2
Length = 156
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 178 SQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGR 219
S++ +KLDE+ IP + LEVS+PGAER LK D R
Sbjct: 56 SEQLSEKLDEIDP---IPHNYFLEVSSPGAERPLKKARDFER 94
>sp|Q9X299|RIMP_THEMA Ribosome maturation factor RimP OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=rimP PE=3 SV=1
Length = 150
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 127 ALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLD 186
A IA E L++ D ++ RG+V + + N G S+ + E +S+E ++ LD
Sbjct: 14 AERIAEEQGLEIFD----VQYRRESRGWVLRII--IDNPVGYVSVRDCELFSREMERFLD 67
Query: 187 EVGALGEIPDDLALEVSTPGAERMLKVPDDLGRF 220
I LEVS+PG +R L+ P D RF
Sbjct: 68 REDF---IEHSYTLEVSSPGLDRPLRGPRDYVRF 98
>sp|Q6A7M3|RIMP_PROAC Ribosome maturation factor RimP OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=rimP PE=3 SV=1
Length = 178
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 124 GERALSIAHEVLLQLGDDI-KLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYK 182
ER + V+ Q+G ++ ++ A R V V +D PS++E+ + E
Sbjct: 3 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 62
Query: 183 KKLDEVGALGEIPDDLALEVSTPGAERMLKVP 214
LD+ GA+GE P LEVS+ G L P
Sbjct: 63 HCLDDSGAMGESP--YTLEVSSRGVSTPLTQP 92
>sp|B1XI06|RIMP_SYNP2 Ribosome maturation factor RimP OS=Synechococcus sp. (strain ATCC
27264 / PCC 7002 / PR-6) GN=rimP PE=3 SV=2
Length = 153
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 122 PWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLD--KLSNKYGCPSMEELESYSQ 179
P R ++ A + +LG ++ F+ + V +R+D LS G +E+ E +S+
Sbjct: 4 PLIPRIVTCAEPIAAELGLEVVDVVFQTNKKPPV-LRIDVRNLSQDTG---LEDCERFSR 59
Query: 180 EYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREK 239
+L+ A IP LEVS+PG +R L + F+ P+ V D +E
Sbjct: 60 LLDPQLE---AQEIIPGAYVLEVSSPGTDRNLTTDREFIAFRGFPVRVKTYAPYKDQKEW 116
Query: 240 TGVF 243
G
Sbjct: 117 CGTL 120
>sp|A6LMV9|RIMP_THEM4 Ribosome maturation factor RimP OS=Thermosipho melanesiensis
(strain BI429 / DSM 12029) GN=rimP PE=3 SV=1
Length = 147
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 127 ALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLD 186
A I E L+L D +K Y + R ++ + +D N Y S ++ E+ S++ + +LD
Sbjct: 12 AQKICEEFHLELFD-VKYY--NKSGRWFLEIIID---NPYDYISTKDCENVSRKLEFELD 65
Query: 187 EVGALGEIPDDLALEVSTPGAERMLKVPDDLGRF 220
++ IP+ L VS+PG R L+ D RF
Sbjct: 66 KINI---IPNKYYLTVSSPGLNRPLRNVKDFERF 96
>sp|C0ZF55|RIMP_BREBN Ribosome maturation factor RimP OS=Brevibacillus brevis (strain 47
/ JCM 6285 / NBRC 100599) GN=rimP PE=3 SV=1
Length = 152
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 162 LSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGR 219
+ N+ G +++ S++ +KLDEV IP LEVS+PGAER L+ D +
Sbjct: 41 IDNETGNIDIDDCRLVSEKLSEKLDEVDP---IPTAYFLEVSSPGAERPLRKDKDFTK 95
>sp|B9K861|RIMP_THENN Ribosome maturation factor RimP OS=Thermotoga neapolitana (strain
ATCC 49049 / DSM 4359 / NS-E) GN=rimP PE=3 SV=1
Length = 150
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 131 AHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGA 190
A + + G +I ++ RG+V + + N G S+ + E +S+E ++ LD
Sbjct: 14 AERIAEKQGLEIFDIQYRRESRGWVLRVV--IDNPVGYVSVRDCELFSRELERFLDREDL 71
Query: 191 LGEIPDDLALEVSTPGAERMLKVPDDLGRF 220
I LEVS+PG +R L+ P D RF
Sbjct: 72 ---IEHSYTLEVSSPGLDRPLRGPKDYQRF 98
>sp|Q03WH0|RIMP_LEUMM Ribosome maturation factor RimP OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=rimP PE=3
SV=1
Length = 158
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 157 VRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLK 212
+ LDK +++ +M +L ++QE + LD V IP+ L++S+PGA+R LK
Sbjct: 40 ILLDKPDHQF--ITMNDLTLFTQEVNELLDTVDP-DPIPEAYVLDISSPGADRPLK 92
>sp|Q5T0U0|CC122_HUMAN Coiled-coil domain-containing protein 122 OS=Homo sapiens
GN=CCDC122 PE=1 SV=1
Length = 273
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 176 SYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITV-------- 227
S+ E +K D V L + ++L ++ PG R+ +V +D+ K+ ITV
Sbjct: 147 SFMTELHEKRDFVKKLKTMKEELMQDLQNPGGNRITQVQEDITNLKDKIITVKESIIEKT 206
Query: 228 CYEDQDSDSREK 239
C+ +++ + EK
Sbjct: 207 CFLEEEKKTHEK 218
>sp|Q0I7K5|RIMP_SYNS3 Ribosome maturation factor RimP OS=Synechococcus sp. (strain
CC9311) GN=rimP PE=3 SV=1
Length = 157
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 170 SMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCY 229
++++ ++S + L+ L E LE+S+PG L+ D F+ P+ V +
Sbjct: 53 TLDDCAAFSAPMGEALENSAVLNEA---YVLEISSPGIGDHLQSDRDFQTFRRYPVDVIH 109
Query: 230 EDQDSDSREKTGVFL 244
D D ++ +G L
Sbjct: 110 RDPDGAEQKHSGTLL 124
>sp|Q4JV48|RIMP_CORJK Ribosome maturation factor RimP OS=Corynebacterium jeikeium (strain
K411) GN=rimP PE=3 SV=1
Length = 191
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 148 KATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIP--DDLALEVSTP 205
KA + + + +D + P +++LE S+E K LD+ A GE+ LE++TP
Sbjct: 33 KAGAKSAIRIAVDTADPRAERPDLDQLEELSREVSKHLDDAEAAGEMSFGAGYTLELTTP 92
Query: 206 GAE 208
G +
Sbjct: 93 GVD 95
>sp|Q88VK3|RIMP_LACPL Ribosome maturation factor RimP OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=rimP PE=3 SV=1
Length = 158
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 156 YVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLK 212
Y+RL +K G ++EE S E +KLD + IP LEVS+PGAER LK
Sbjct: 37 YLRL--YIDKPGGINIEECAMVSDELSEKLDAMEP-DPIPQAYFLEVSSPGAERPLK 90
>sp|A4IMD3|RIMP_GEOTN Ribosome maturation factor RimP OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=rimP PE=3 SV=2
Length = 157
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 171 MEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDL 217
+E+ S++ +KLDEV IP + LEVS+PGAER LK D
Sbjct: 50 IEQCGVVSEKLSEKLDEVDP---IPHNYFLEVSSPGAERPLKNEKDF 93
>sp|B1LAP5|RIMP_THESQ Ribosome maturation factor RimP OS=Thermotoga sp. (strain RQ2)
GN=rimP PE=3 SV=1
Length = 150
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 127 ALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLD 186
A IA E L++ D ++ RG++ + + N G S+ + E +S+E ++ LD
Sbjct: 14 AERIAEEQGLEIFD----VQYRRESRGWILRII--IDNPMGYVSVRDCELFSREMERFLD 67
Query: 187 EVGALGEIPDDLALEVSTPGAERMLKVPDDLGRF 220
I LEVS+PG +R L+ P D RF
Sbjct: 68 REDL---IEHSYTLEVSSPGLDRPLRGPRDYVRF 98
>sp|Q9KYR2|RIMP_STRCO Ribosome maturation factor RimP OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=rimP PE=3 SV=1
Length = 177
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 171 MEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERML-------KVPDDLGRFK 221
++ + S+ KLDE A+GE + LEV TPGAER L + D L RF+
Sbjct: 50 LDRIADVSRALSAKLDETDAMGE--GEYTLEVGTPGAERSLTQHRHYVRATDRLVRFQ 105
>sp|A0AIC2|RIMP_LISW6 Ribosome maturation factor RimP OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rimP PE=3
SV=1
Length = 155
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 130 IAHEVLLQLGDDIKLYAF-KATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEV 188
I +E+ L+L D AF K P ++ + +DK G ++E + S++ +K+DE
Sbjct: 15 ITNELQLELVD----IAFEKEGPNWFLRIFIDK----DGGVDIDECAAVSEKVSEKMDES 66
Query: 189 GALGEIPDDLALEVSTPGAERMLKVPDDL 217
+ + + LEVS+PGAER LK D
Sbjct: 67 DPITQ---NYFLEVSSPGAERPLKKEQDF 92
>sp|P72687|RIMP_SYNY3 Ribosome maturation factor RimP OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rimP PE=3 SV=2
Length = 151
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 128 LSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDE 187
L++A + LG ++ F+ R V +R+D + N S+ + E++S+ ++ +L+E
Sbjct: 10 LALAQPIAEDLGLEVTDAVFQTNKRPPV-LRID-IRNLQQDTSLNDCEAFSRSFEAQLEE 67
Query: 188 VGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYED 231
I LEVS+PG L D FK + V ++
Sbjct: 68 SSL---IASAYVLEVSSPGISPYLATERDFIAFKGFEVVVTSDN 108
>sp|Q01W33|RIMP_SOLUE Ribosome maturation factor RimP OS=Solibacter usitatus (strain
Ellin6076) GN=rimP PE=3 SV=2
Length = 153
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 186 DEVGALGE----IPDDLALEVSTPGAERMLKVPDDLGRF--KEMPITV 227
D+VG + E IP LEVS+PG ER L P D RF ++ ITV
Sbjct: 58 DKVGEILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQRFHGQKAKITV 105
>sp|B7IDT7|RIMP_THEAB Ribosome maturation factor RimP OS=Thermosipho africanus (strain
TCF52B) GN=rimP PE=3 SV=1
Length = 148
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 170 SMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCY 229
S ++ E+ S+E + +LD+ L IP L VS+PG +R L+ DD RF + +
Sbjct: 49 STKDCENISREVEFQLDK---LDIIPQRYYLTVSSPGLDRPLRSIDDFKRFINNKVKIKL 105
Query: 230 EDQ 232
E++
Sbjct: 106 ENE 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,804,029
Number of Sequences: 539616
Number of extensions: 5479488
Number of successful extensions: 18361
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 18286
Number of HSP's gapped (non-prelim): 179
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)