Query 022231
Match_columns 300
No_of_seqs 177 out of 1259
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 16:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ib8_A Conserved protein SP14. 100.0 3.8E-41 1.3E-45 293.0 16.8 159 114-300 2-162 (164)
2 1y96_A Gemin6, SIP2, GEM-assoc 83.1 1.7 5.6E-05 34.0 4.8 65 212-297 7-71 (86)
3 3pgw_B SM B; protein-RNA compl 82.2 3.9 0.00013 37.2 7.7 47 211-266 3-49 (231)
4 1ycy_A Conserved hypothetical 72.5 11 0.00036 28.2 6.2 62 214-296 8-69 (71)
5 1d3b_B Protein (small nuclear 72.0 2.6 8.8E-05 32.1 3.0 43 213-264 5-47 (91)
6 4emk_C U6 snRNA-associated SM- 68.9 4.4 0.00015 32.6 3.8 51 207-266 17-68 (113)
7 1d3b_A Protein (small nuclear 68.8 5.8 0.0002 29.4 4.2 40 217-265 10-49 (75)
8 1i4k_A Putative snRNP SM-like 68.7 5.5 0.00019 29.2 4.1 42 215-265 7-48 (77)
9 3s6n_G Small nuclear ribonucle 68.4 4.1 0.00014 30.1 3.3 43 214-265 6-48 (76)
10 1h64_1 SnRNP SM-like protein; 68.2 5.5 0.00019 29.1 4.0 42 215-265 7-48 (75)
11 4emk_B U6 snRNA-associated SM- 66.3 6.1 0.00021 29.0 3.9 41 215-264 7-47 (75)
12 1ljo_A Archaeal SM-like protei 66.0 8.5 0.00029 28.3 4.7 44 214-265 7-50 (77)
13 1mgq_A SM-like protein; LSM, R 65.3 9.2 0.00032 28.7 4.8 44 213-265 16-59 (83)
14 1th7_A SnRNP-2, small nuclear 65.1 6.9 0.00024 29.1 4.0 42 215-265 12-53 (81)
15 3bw1_A SMX4 protein, U6 snRNA- 64.6 7.1 0.00024 30.2 4.1 42 215-265 13-54 (96)
16 3byp_A CZRB protein; membrane 63.6 31 0.0011 25.4 7.5 81 125-214 13-94 (94)
17 3s6n_F Small nuclear ribonucle 63.1 9.3 0.00032 29.0 4.5 42 214-264 8-49 (86)
18 2rm4_A CG6311-PB, DM EDC3; enh 57.1 29 0.00099 27.8 6.4 62 219-297 9-70 (103)
19 1i8f_A Putative snRNP SM-like 56.9 9.3 0.00032 28.5 3.5 41 215-264 14-54 (81)
20 4emk_A U6 snRNA-associated SM- 55.9 11 0.00039 29.3 3.9 47 210-265 17-64 (94)
21 4emh_A Probable U6 snRNA-assoc 55.8 10 0.00035 30.2 3.7 39 217-264 21-59 (105)
22 1n9r_A SMF, small nuclear ribo 53.4 9.9 0.00034 29.4 3.2 43 215-265 24-66 (93)
23 1b34_A Protein (small nuclear 51.7 20 0.00068 28.8 4.9 42 215-265 5-46 (119)
24 2fwk_A U6 snRNA-associated SM- 50.9 12 0.0004 30.3 3.4 42 216-266 32-73 (121)
25 2y9a_D Small nuclear ribonucle 50.2 18 0.00062 29.6 4.5 41 215-264 8-48 (126)
26 4emg_A Probable U6 snRNA-assoc 49.6 18 0.0006 27.9 4.1 47 206-265 6-53 (93)
27 4a53_A EDC3; RNA binding prote 48.7 40 0.0014 27.9 6.2 32 218-255 8-39 (125)
28 1m5q_A SMAP3, small nuclear ri 44.2 26 0.00088 28.9 4.5 41 215-264 3-43 (130)
29 2e6z_A Transcription elongatio 42.6 23 0.0008 25.0 3.5 50 220-293 9-58 (59)
30 2vc8_A Enhancer of mRNA-decapp 33.4 91 0.0031 24.1 5.7 62 219-297 6-67 (84)
31 2nyi_A Unknown protein; protei 31.8 1.2E+02 0.004 25.5 6.9 35 127-161 18-53 (195)
32 3p8b_B Transcription antitermi 31.0 77 0.0026 25.8 5.4 54 220-295 93-146 (152)
33 3s6n_E Small nuclear ribonucle 29.3 23 0.00078 27.4 1.7 50 208-264 11-63 (92)
34 1nz9_A Transcription antitermi 29.0 93 0.0032 21.3 4.8 52 221-294 7-58 (58)
35 3dex_A SAV_2001; alpha-beta pr 28.1 91 0.0031 25.0 5.1 66 119-186 21-89 (107)
36 1wwj_A Circadian clock protein 27.9 53 0.0018 26.4 3.7 42 152-206 7-48 (105)
37 1b34_B Protein (small nuclear 23.9 60 0.0021 25.8 3.4 40 217-265 32-73 (118)
38 2fao_A Probable ATP-dependent 23.1 1.9E+02 0.0066 27.0 7.1 84 120-229 144-229 (309)
39 2eqj_A Metal-response element- 22.9 1.3E+02 0.0044 22.3 4.7 36 220-261 15-50 (66)
40 2e70_A Transcription elongatio 20.6 1.4E+02 0.0047 22.3 4.5 45 204-256 5-49 (71)
41 3fb9_A Uncharacterized protein 20.6 2.3E+02 0.0078 22.1 5.9 70 214-300 17-88 (90)
No 1
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=100.00 E-value=3.8e-41 Score=292.95 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=137.6
Q ss_pred CceEecCCCHHHHHHHHHHHHHhhcCCeEEEEEEE-ecCCcEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhhccccCC
Q 022231 114 GGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFK-ATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALG 192 (300)
Q Consensus 114 ~~i~~~~~~~~e~I~el~epvl~~~G~eLvdVe~~-~~~~~~LrV~IDk~~~~dggVsLDDCe~vSr~Is~~LD~~e~~d 192 (300)
.|+..+. ++.++|+++++|++++ ||+||+|+|. .+++++|||+||+ ++|||+|||+++||+|++.||+. ++|
T Consensus 2 ~~~~mm~-~~~~~v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~----~~gi~lddC~~vSr~is~~LD~~-~~d 74 (164)
T 1ib8_A 2 SGVDAIA-TIVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDK----PEGITLNDTADLTEMISPVLDTI-KPD 74 (164)
T ss_dssp CSCCHHH-HHHHHHHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEEC----SSCCCHHHHHHHHHHHGGGTTTC-CSC
T ss_pred chhHHHH-HHHHHHHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEEC----CCCCCHHHHHHHHHHHHHHhccc-ccc
Confidence 3444432 3678999999999999 9999999998 6778999999999 78999999999999999999952 368
Q ss_pred CCCCCeEEEEecCCCCCCCCChHHHhhcCCCeeEEEE-eecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccCCCCCC
Q 022231 193 EIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCY-EDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEK 271 (300)
Q Consensus 193 ~I~~~Y~LEVSSPGieRpLk~~~df~RfiGr~VkV~l-~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr~k~~K 271 (300)
+|+++|+|||||||++|||++++||.||+|+.|+|++ .|++|+ +.++| +|.+++++.+++.+. .|
T Consensus 75 ~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~~~~g~-k~~~G--~L~~~~~~~v~l~~~-----------~k 140 (164)
T 1ib8_A 75 PFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQ-KVFEG--TLLAFEEDELTMEYM-----------DK 140 (164)
T ss_dssp CCCSCEEEEEECCSSSSCCSSHHHHHHHCSEEEEEECSSCSSSC-SEEEE--EEEEEETTEEEEEEE-----------CS
T ss_pred CCCCCeEEEEeCCCCCCCCCCHHHHHHhCCcEEEEEEecccCCc-eEEEE--EEEEEeCCEEEEEEe-----------cc
Confidence 9999999999999999999999999999999999999 888987 67899 889999998766543 11
Q ss_pred CCcccccccceeEEeeccccceeEEEEeC
Q 022231 272 GRPLSRKRRDWRLNLPFVMHKRVTLYLEY 300 (300)
Q Consensus 272 Gk~l~kkq~~~~l~Ipf~dI~KArL~ieF 300 (300)
++ ...++|||++|+||||.++|
T Consensus 141 ~~-------~~~~~i~~~~I~ka~l~~ef 162 (164)
T 1ib8_A 141 TR-------KKTVQIPYSLVSKARLAVKL 162 (164)
T ss_dssp SC-------EEEEEECSSCCSSCEEECSC
T ss_pred cC-------CeEEEEEHHHCcEEEEEEEe
Confidence 11 01388999999999999998
No 2
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=83.10 E-value=1.7 Score=34.00 Aligned_cols=65 Identities=15% Similarity=0.053 Sum_probs=45.1
Q ss_pred CChHHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccCCCCCCCCcccccccceeEEeecccc
Q 022231 212 KVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMH 291 (300)
Q Consensus 212 k~~~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr~k~~KGk~l~kkq~~~~l~Ipf~dI 291 (300)
++|.+|..++|+.|+|++. +| +.++| .|..+|..+..+++ .+.. .+++. .++-|.-..|
T Consensus 7 ~~p~el~~li~KeV~V~l~--dg--~~y~G--~l~tvDp~s~sIvL--~n~~------~~~~~-------~~~iI~G~aI 65 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTAS--EK--NEYKG--WVLTTDPVSANIVL--VNFL------EDGSM-------SVTGIMGHAV 65 (86)
T ss_dssp SCHHHHHHTTTCEEEEEET--TT--EEEEE--EEEEECTTTCCEEE--EEEC------TTSCE-------EEEEECGGGE
T ss_pred CCHHHHHhhcCCEEEEEEc--CC--CEEEE--EEEEECCCceEEEE--eecc------cCCeE-------EEEEEecceE
Confidence 5788999999999999994 66 47899 78999987776664 3431 12221 1356777777
Q ss_pred ceeEEE
Q 022231 292 KRVTLY 297 (300)
Q Consensus 292 ~KArL~ 297 (300)
+.+.+.
T Consensus 66 ~eI~v~ 71 (86)
T 1y96_A 66 QTVETM 71 (86)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 766554
No 3
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=82.20 E-value=3.9 Score=37.20 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=36.1
Q ss_pred CCChHHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccC
Q 022231 211 LKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENR 266 (300)
Q Consensus 211 Lk~~~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr 266 (300)
+.....+.+++++.|+|+++ +|+ ++.| +|.++|... .++ |.|+.+-+
T Consensus 3 v~k~~kL~klIdKrV~V~Lk--dGR--el~G--tLkgFDq~M-NLV--L~Da~E~~ 49 (231)
T 3pgw_B 3 VGKSSKMLQHIDYRMRCILQ--DGR--IFIG--TFKAFDKHM-NLI--LCDCDEFR 49 (231)
T ss_pred cCchHHHHHhcCCeEEEEEC--CCc--EEEE--EEEEEcccc-cEE--ecCEEEEE
Confidence 34567899999999999996 675 7899 789998764 444 66776654
No 4
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=72.52 E-value=11 Score=28.21 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=38.7
Q ss_pred hHHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccCCCCCCCCcccccccceeEEeeccccce
Q 022231 214 PDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKR 293 (300)
Q Consensus 214 ~~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr~k~~KGk~l~kkq~~~~l~Ipf~dI~K 293 (300)
.+-+.+.+|+.|-|.. .|. ..|+| .|.++|++.+-+ =.+.|+.-| |||. +-+..++|.=
T Consensus 8 dktL~~WKg~rvAv~v---g~e-hSFtG--iledFDeEviLL-~dV~D~~GN-----k~k~---------liv~idDinW 66 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSV---GGD-HSFTG--TLEDFDEEVILL-KDVVDVIGN-----RGKQ---------MLIGLEDINW 66 (71)
T ss_dssp HHHHHHHTTSEEEEEE---C-----CEE--EEEEECSSEEEE-EEEEETTEE-----EEEE---------EEEEGGGEEE
T ss_pred HHHHHHhCCcEEEEEe---cCc-ceeee--ehhhcCcceeeh-hhHHHHhcc-----ccce---------eEEEeccceE
Confidence 3557899999999986 343 56899 689999996522 133344343 3442 6677777765
Q ss_pred eEE
Q 022231 294 VTL 296 (300)
Q Consensus 294 ArL 296 (300)
+.|
T Consensus 67 imL 69 (71)
T 1ycy_A 67 IML 69 (71)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 5
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=72.03 E-value=2.6 Score=32.13 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=31.7
Q ss_pred ChHHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccc
Q 022231 213 VPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 264 (300)
Q Consensus 213 ~~~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~ 264 (300)
....+.+++|+.|.|+++ +|+ .+.| +|.++|... .++ |.|+.+
T Consensus 5 ~~~~L~~~~~k~V~V~l~--~gr--~~~G--~L~~~D~~m-Nlv--L~d~~E 47 (91)
T 1d3b_B 5 KSSKMLQHIDYRMRCILQ--DGR--IFIG--TFKAFDKHM-NLI--LCDCDE 47 (91)
T ss_dssp --CCCGGGTTSEEEEEET--TCC--EEEE--EEEECCTTC-CEE--EEEEEE
T ss_pred hhHHHHHHcCCcEEEEEC--CCe--EEEE--EEEEECCCC-eEE--ecCEEE
Confidence 345678999999999996 675 7899 789999775 344 456655
No 6
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=68.87 E-value=4.4 Score=32.63 Aligned_cols=51 Identities=29% Similarity=0.373 Sum_probs=28.0
Q ss_pred CCCCCCC-hHHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccC
Q 022231 207 AERMLKV-PDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENR 266 (300)
Q Consensus 207 ieRpLk~-~~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr 266 (300)
-++|-+. ..++.+++|+.|.|++. +|+ .+.| +|.++|... .++ |.|+.+-+
T Consensus 17 ~~~~kke~i~~L~~~l~k~V~V~L~--dGr--~~~G--~L~~fD~~m-NLV--L~d~~E~~ 68 (113)
T 4emk_C 17 TERPRKESILDLSRYQDQRIQATFT--GGR--QITG--ILKGFDQLM-NLV--LDDVEEQL 68 (113)
T ss_dssp ---------------CCSEEEEEET--TSC--EEEE--EEEEECTTC-CEE--EEEEEEEC
T ss_pred ccCCccchHHHHHHHcCCcEEEEEe--CCe--EEEE--EEEEEcCcc-cEE--EeeEEEEE
Confidence 4566553 47889999999999996 675 7899 789998865 455 55665543
No 7
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=68.75 E-value=5.8 Score=29.36 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=29.9
Q ss_pred HhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 217 LGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 217 f~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
+..+.|++|.|+++ +|+ +++| +|.++|+-- .++ |.|+.+-
T Consensus 10 L~~~~g~~V~VeLk--~g~--~~~G--~L~~~D~~M-Nl~--L~~~~e~ 49 (75)
T 1d3b_A 10 LHEAEGHIVTCETN--TGE--VYRG--KLIEAEDNM-NCQ--MSNITVT 49 (75)
T ss_dssp HHHTTTSEEEEEET--TSC--EEEE--EEEEECTTC-CEE--EEEEEEE
T ss_pred HHHhCCCEEEEEEC--CCc--EEEE--EEEEEccce-eEE--EEeEEEE
Confidence 46789999999996 664 7899 889998764 455 4566543
No 8
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=68.73 E-value=5.5 Score=29.22 Aligned_cols=42 Identities=31% Similarity=0.360 Sum_probs=31.6
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 215 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 215 ~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
.-+.+++|++|.|+++ +|+ .+.| +|.++|... .++ |.|+.+-
T Consensus 7 ~~L~~~~~~~V~V~L~--~g~--~~~G--~L~~~D~~m-Nlv--L~d~~e~ 48 (77)
T 1i4k_A 7 DVLNRSLKSPVIVRLK--GGR--EFRG--TLDGYDIHM-NLV--LLDAEEI 48 (77)
T ss_dssp HHHHTTTTSEEEEEET--TSC--EEEE--EEEEECTTC-CEE--EEEEEEE
T ss_pred HHHHHhCCCEEEEEEc--CCC--EEEE--EEEEEcCCC-CeE--EeeEEEE
Confidence 4577899999999996 675 6899 789999775 445 4566553
No 9
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=68.42 E-value=4.1 Score=30.14 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=26.5
Q ss_pred hHHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 214 PDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 214 ~~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
...+..++|+.|.|+++ +|+ .+.| +|.++|... .++ |.|+.+-
T Consensus 6 ~~~L~~~~~k~V~V~Lk--~gr--~~~G--~L~~~D~~m-Nlv--L~~~~e~ 48 (76)
T 3s6n_G 6 PPELKKFMDKKLSLKLN--GGR--HVQG--ILRGFDPFM-NLV--IDECVEM 48 (76)
T ss_dssp --------CCEEEEEET--TTE--EEEE--EEEEECTTC-CEE--EEEEEEC
T ss_pred hHHHHHhCCCeEEEEEC--CCc--EEEE--EEEEECCcc-eEE--EeceEEE
Confidence 45688999999999996 664 7899 789998765 455 5566553
No 10
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=68.24 E-value=5.5 Score=29.12 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=31.5
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 215 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 215 ~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
..+.+++|++|.|+++ +|+ .+.| +|.++|... .++ |.|+.+-
T Consensus 7 ~~L~~~~~~~V~V~l~--~g~--~~~G--~L~~~D~~m-Nlv--L~d~~e~ 48 (75)
T 1h64_1 7 DVIHRSLDKDVLVILK--KGF--EFRG--RLIGYDIHL-NVV--LADAEMI 48 (75)
T ss_dssp HHHHTTTTSEEEEEET--TSE--EEEE--EEEEECTTC-CEE--EEEEEEE
T ss_pred HHHHHHCCCEEEEEEC--CCC--EEEE--EEEEEeCCC-CeE--EeeEEEE
Confidence 4577899999999996 664 7899 789999765 445 4566553
No 11
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=66.27 E-value=6.1 Score=29.05 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=31.0
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccc
Q 022231 215 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 264 (300)
Q Consensus 215 ~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~ 264 (300)
.-+..++|++|.|+++ +|+ .+.| +|.++|.-. .++ |.|+.+
T Consensus 7 ~~L~~~~~k~V~V~Lk--~g~--~~~G--~L~~~D~~m-Nlv--L~d~~e 47 (75)
T 4emk_B 7 EFLNKVIGKKVLIRLS--SGV--DYKG--ILSCLDGYM-NLA--LERTEE 47 (75)
T ss_dssp HHHHHTTTSEEEEECT--TSC--EEEE--EEEEECTTC-EEE--EEEEEE
T ss_pred HHHHHhCCCeEEEEEc--CCc--EEEE--EEEEEcCcc-eEE--EccEEE
Confidence 4567899999999996 674 7899 789998764 455 456544
No 12
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=65.97 E-value=8.5 Score=28.28 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=32.7
Q ss_pred hHHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 214 PDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 214 ~~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
...+.+++|+.|.|+++ +|+ +.+.| +|.++|.-- .++ |.|+.+-
T Consensus 7 ~~~L~~~~~~~v~V~lk--~g~-~~~~G--~L~~~D~~m-Nlv--L~d~~e~ 50 (77)
T 1ljo_A 7 NQMVKSMVGKIIRVEMK--GEE-NQLVG--KLEGVDDYM-NLY--LTNAMEC 50 (77)
T ss_dssp HHHHHHTTTSEEEEEET--TCS-SEEEE--EEEEECTTC-CEE--EEEEEEE
T ss_pred HHHHHHHCCCEEEEEEe--CCC-EEEEE--EEEEECCcc-eEE--EeeEEEE
Confidence 45678999999999996 672 36899 789999764 445 5566553
No 13
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=65.30 E-value=9.2 Score=28.66 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=32.9
Q ss_pred ChHHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 213 VPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 213 ~~~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
-...+.+++|+.|.|+++ +|+ .+.| +|.++|... .++ |.|+.+-
T Consensus 16 P~~~L~~~~~~~V~V~Lk--~g~--~~~G--~L~~~D~~m-Nlv--L~d~~e~ 59 (83)
T 1mgq_A 16 PLDALGNSLNSPVIIKLK--GDR--EFRG--VLKSFDLHM-NLV--LNDAEEL 59 (83)
T ss_dssp TTHHHHHTTTSEEEEEET--TTE--EEEE--EEEEECTTC-CEE--EEEEEEE
T ss_pred hHHHHHHhCCCEEEEEEc--CCc--EEEE--EEEEECCCc-eeE--EccEEEE
Confidence 345788999999999996 664 7899 789999775 445 5566553
No 14
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=65.09 E-value=6.9 Score=29.14 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=32.1
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 215 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 215 ~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
..+.+++|++|.|+++ +|+ .+.| +|.++|... .++ |.|+.+-
T Consensus 12 ~~L~~~~~~~V~V~l~--~g~--~~~G--~L~~~D~~m-Nlv--L~d~~e~ 53 (81)
T 1th7_A 12 KVLAESLNNLVLVKLK--GNK--EVRG--MLRSYDQHM-NLV--LSDSEEI 53 (81)
T ss_dssp HHHHHHTTSEEEEEET--TTE--EEEE--EEEEECTTC-CEE--EEEEEEE
T ss_pred HHHHHhCCCeEEEEEc--CCc--EEEE--EEEEEcCCC-CEE--EccEEEE
Confidence 4678899999999996 664 7899 789999775 445 5566554
No 15
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=64.57 E-value=7.1 Score=30.25 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=31.5
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 215 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 215 ~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
..+..++|++|.|+++ +|+ .+.| +|.++|.-. .++ |.|+.+-
T Consensus 13 ~~L~~~i~k~V~V~Lk--~gr--~~~G--~L~~fD~~m-NlV--L~d~~E~ 54 (96)
T 3bw1_A 13 DLLKLNLDERVYIKLR--GAR--TLVG--TLQAFDSHC-NIV--LSDAVET 54 (96)
T ss_dssp HHHGGGTTSEEEEEEG--GGC--EEEE--EEEEECTTC-CEE--EEEEEEE
T ss_pred HHHHHHCCCeEEEEEC--CCc--EEEE--EEEEECCCC-cEE--EcCEEEE
Confidence 4578899999999996 664 6899 789999764 344 4565543
No 16
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=63.55 E-value=31 Score=25.40 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEEE-ecCCcEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhhccccCCCCCCCeEEEEe
Q 022231 125 ERALSIAHEVLLQLGDDIKLYAFK-ATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVS 203 (300)
Q Consensus 125 e~I~el~epvl~~~G~eLvdVe~~-~~~~~~LrV~IDk~~~~dggVsLDDCe~vSr~Is~~LD~~e~~d~I~~~Y~LEVS 203 (300)
++|.+.+..++..--..+-++... .++...+.+-|.- ++..++.+...+...+...|-. .-++- .-++++-
T Consensus 13 ~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v----~~~~~~~~~h~i~~~ie~~l~~---~~~~~-~vtIh~e 84 (94)
T 3byp_A 13 ERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVV----RGDTPVEEAHRLCDELERALAQ---AFPGL-QATIHVE 84 (94)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEE----CTTCBHHHHHHHHHHHHHHHHH---HSTTE-EEEEEEE
T ss_pred HHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEE----CCCCcHHHHHHHHHHHHHHHHH---HCCCC-EEEEEeC
Confidence 344444443321223467787776 4444556666654 4568999999999999988853 11222 4566766
Q ss_pred cCCCCCCCCCh
Q 022231 204 TPGAERMLKVP 214 (300)
Q Consensus 204 SPGieRpLk~~ 214 (300)
|...++|++|
T Consensus 85 -p~~~~~~~~~ 94 (94)
T 3byp_A 85 -PEGERKRTNP 94 (94)
T ss_dssp -ECC-------
T ss_pred -CCCccccCCC
Confidence 4666777654
No 17
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=63.14 E-value=9.3 Score=29.03 Aligned_cols=42 Identities=24% Similarity=0.156 Sum_probs=31.5
Q ss_pred hHHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccc
Q 022231 214 PDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 264 (300)
Q Consensus 214 ~~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~ 264 (300)
..-+..++|+.|.|+++ +|+ .+.| +|.++|.-- .++ |.|+.+
T Consensus 8 ~~~L~~~~~k~V~V~Lk--~g~--~~~G--~L~~~D~~m-Nlv--L~d~~e 49 (86)
T 3s6n_F 8 KPFLNGLTGKPVMVKLK--WGM--EYKG--YLVSVDGYM-NMQ--LANTEE 49 (86)
T ss_dssp HHHHHHHTTSEEEEEET--TSC--EEEE--EEEEECTTC-CEE--EEEEEE
T ss_pred HHHHHHhCCCeEEEEEc--CCe--EEEE--EEEEEcCce-EEE--EeeEEE
Confidence 34567899999999996 674 7899 789998864 445 556654
No 18
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=57.07 E-value=29 Score=27.75 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=43.1
Q ss_pred hcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccCCCCCCCCcccccccceeEEeeccccceeEEE
Q 022231 219 RFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLY 297 (300)
Q Consensus 219 RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr~k~~KGk~l~kkq~~~~l~Ipf~dI~KArL~ 297 (300)
.++|..|.|...+.=| .|+| .+..++.+.++++ + ....|-||.+...+ +++.-.||++.+|.
T Consensus 9 dwiG~~VSI~C~d~LG---VyQG--~I~~V~~~~ItL~----k------aFrNGiplk~~~~E--VtLsa~DI~~L~II 70 (103)
T 2rm4_A 9 DWIGCAVSIACDEVLG---VFQG--LIKQISAEEITIV----R------AFRNGVPLRKQNAE--VVLKCTDIRSIDLI 70 (103)
T ss_dssp GGTTCEEEEEECTTTC---EEEE--EEEEEETTEEEEE----E------EEETTEECSCSSSC--EEEETTTEEEEEEE
T ss_pred ceeceEEEEeeCCcce---EeeE--EEEEcccceeEEh----h------hhhcCcCcCCCCce--EEEEecchhheeee
Confidence 6899999999953445 4899 7899998876443 1 12345544333333 89999999998874
No 19
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=56.94 E-value=9.3 Score=28.46 Aligned_cols=41 Identities=27% Similarity=0.288 Sum_probs=30.9
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccc
Q 022231 215 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 264 (300)
Q Consensus 215 ~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~ 264 (300)
..+.+++|+.|.|+++ +| +.+.| +|.++|... .++ |.|+.+
T Consensus 14 ~~L~~~~~~~V~V~l~--~g--~~~~G--~L~~~D~~m-Nlv--L~d~~e 54 (81)
T 1i8f_A 14 ATLQDSIGKQVLVKLR--DS--HEIRG--ILRSFDQHV-NLL--LEDAEE 54 (81)
T ss_dssp HHHHTTTTSEEEEEEG--GG--EEEEE--EEEEECTTC-CEE--EEEEEE
T ss_pred HHHHHHCCCeEEEEEc--CC--cEEEE--EEEEEcCCC-eeE--EccEEE
Confidence 4567899999999996 56 47899 789999775 455 556654
No 20
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=55.92 E-value=11 Score=29.30 Aligned_cols=47 Identities=26% Similarity=0.248 Sum_probs=31.7
Q ss_pred CCCChHH-HhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 210 MLKVPDD-LGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 210 pLk~~~d-f~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
....|-. +.+++|+.|.|+++ +| +++.| +|.++|.-. .++ |.|+.+-
T Consensus 17 ~~~~Pl~lL~~~l~k~V~V~Lk--~g--r~~~G--~L~gfD~~m-Nlv--L~d~~E~ 64 (94)
T 4emk_A 17 MTILPLELIDKCIGSNLWVIMK--SE--REFAG--TLVGFDDYV-NIV--LKDVTEY 64 (94)
T ss_dssp ---CHHHHHHHTTTSEEEEEES--SS--EEEEE--EEEEECTTC-CEE--EEEEEEE
T ss_pred ccccCHHHHHHHcCCeEEEEEC--CC--cEEEE--EEEEEcccC-CeE--eeeEEEE
Confidence 3444544 46899999999996 56 47899 789998764 455 5566553
No 21
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=55.77 E-value=10 Score=30.17 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=26.0
Q ss_pred HhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccc
Q 022231 217 LGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 264 (300)
Q Consensus 217 f~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~ 264 (300)
+..++|+.|.|+++ +|+ .+.| +|.++|.-- .++ |.|+.+
T Consensus 21 L~~~igk~V~V~Lk--~G~--~~~G--~L~~~D~~M-Nlv--L~d~~e 59 (105)
T 4emh_A 21 LNATQGRPILVELK--NGE--TFNG--HLENCDNYM-NLT--LREVIR 59 (105)
T ss_dssp -----CCEEEEEET--TSC--EEEE--EEEEECTTC-CEE--EEEEEE
T ss_pred HHHhCCCEEEEEEC--CCC--EEEE--EEEEEcCCc-eEE--EEEEEE
Confidence 56789999999996 664 6899 789998764 455 556654
No 22
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=53.43 E-value=9.9 Score=29.44 Aligned_cols=43 Identities=19% Similarity=0.024 Sum_probs=30.4
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 215 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 215 ~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
.-+..++|++|.|+++ +|. +++.| +|.++|.-- .++ |.|+.+-
T Consensus 24 ~~L~~~i~k~V~V~Lk--~g~-~~~~G--~L~~~D~~M-Nlv--L~d~~E~ 66 (93)
T 1n9r_A 24 PFLKGLVNHRVGVKLK--FNS-TEYRG--TLVSTDNYF-NLQ--LNEAEEF 66 (93)
T ss_dssp --CGGGTTSEEEEEES--STT-EEEEE--EEEECCTTT-CEE--EEEEEEE
T ss_pred HHHHHhCCCEEEEEEc--CCC-EEEEE--EEEEEcccc-EEE--EeeEEEE
Confidence 4567789999999996 662 47899 789998764 445 4566543
No 23
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=51.68 E-value=20 Score=28.82 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=31.7
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 215 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 215 ~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
..+..++|+.|.|+++ +|. ++.| +|.++|.-- .++ |.|+++-
T Consensus 5 ~~L~~~~gk~V~V~Lk--~g~--~~~G--~L~~~D~~M-Nlv--L~d~~e~ 46 (119)
T 1b34_A 5 RFLMKLSHETVTIELK--NGT--QVHG--TITGVDVSM-NTH--LKAVKMT 46 (119)
T ss_dssp HHHHTCTTCEEEEEET--TCC--EEEE--EEEEECTTC-CEE--EEEEEEE
T ss_pred HHHHHhCCCEEEEEEc--CCC--EEEE--EEEEEcccc-eEE--eccEEEe
Confidence 4577899999999996 664 7899 789998764 455 5566553
No 24
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=50.95 E-value=12 Score=30.25 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=31.4
Q ss_pred HHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccC
Q 022231 216 DLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENR 266 (300)
Q Consensus 216 df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr 266 (300)
=+.+++|+.|.|.++ +|+ .+.| +|.++|.-. .++ |.|+.+-+
T Consensus 32 lL~~~l~k~V~V~Lk--~Gr--~~~G--~L~~fD~~m-NlV--L~d~~E~~ 73 (121)
T 2fwk_A 32 LIDKCIGNRIYVVMK--GDK--EFSG--VLRGFDEYV-NMV--LDDVQEYG 73 (121)
T ss_dssp HHHHTBTSBCEEEET--TTE--EECC--EEEEECTTC-CEE--EESCCEEE
T ss_pred HHHHHcCCeEEEEEC--CCc--EEEE--EEEEEcccC-CeE--eceEEEEE
Confidence 357899999999996 664 7899 789998764 455 55776543
No 25
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=50.22 E-value=18 Score=29.62 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=30.8
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccc
Q 022231 215 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 264 (300)
Q Consensus 215 ~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~ 264 (300)
.-+..++|+.|.|+++ +|. ++.| +|.++|.-- .++ |.|+++
T Consensus 8 ~~L~~~~gk~V~VeLk--nG~--~~~G--~L~~~D~~M-Ni~--L~dv~e 48 (126)
T 2y9a_D 8 KVLHEAEGHIVTCETN--TGE--VYRG--KLIEAEDNM-NCQ--MSNITV 48 (126)
T ss_dssp HHHHSCSSCEEEEEES--SCC--EEEE--EEEEECTTS-CEE--EEEEEE
T ss_pred HHHHHhCCCEEEEEEC--CCc--EEEE--EEEEEcCce-EEE--EeeEEE
Confidence 3467899999999996 564 7899 789998764 455 556654
No 26
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=49.56 E-value=18 Score=27.90 Aligned_cols=47 Identities=26% Similarity=0.246 Sum_probs=30.9
Q ss_pred CCCCCCCChHHHhhc-CCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 206 GAERMLKVPDDLGRF-KEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 206 GieRpLk~~~df~Rf-iGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
++..|| +|.+. +|+.|.|+++ +|+ .+.| +|.++|... .++ |.|+.+-
T Consensus 6 ~~~~Pl----~lL~~~~~~~V~V~l~--~gr--~~~G--~L~~~D~~m-Nlv--L~d~~E~ 53 (93)
T 4emg_A 6 AVAEPL----DLVRLSLDEIVYVKLR--GDR--ELNG--RLHAYDEHL-NMV--LGDAEEI 53 (93)
T ss_dssp ---CTT----HHHHTTTTSEEEEEET--TTE--EEEE--EEEEECTTC-CEE--EEEEEEE
T ss_pred ccCCCH----HHHHHhCCCEEEEEEC--CCc--EEEE--EEEEECCcc-cEE--eecEEEE
Confidence 444454 45444 8999999996 664 7899 789998764 445 4566554
No 27
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=48.71 E-value=40 Score=27.93 Aligned_cols=32 Identities=13% Similarity=0.315 Sum_probs=26.9
Q ss_pred hhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEE
Q 022231 218 GRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEIC 255 (300)
Q Consensus 218 ~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l 255 (300)
..|+|..|.|++. +|. .++| ++..++...+++
T Consensus 8 sqFlGy~V~v~Lk--Dgs--~~qG--~I~~vd~k~LtL 39 (125)
T 4a53_A 8 ADFYGSNVEVLLN--NDS--KARG--VITNFDSSNSIL 39 (125)
T ss_dssp HHHTTCEEEEEET--TSC--EEEE--EEEEEETTTTEE
T ss_pred HHhcCceEEEEEC--CCC--EeeE--EEEeecCCeeEE
Confidence 4689999999997 675 5799 789999999865
No 28
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=44.16 E-value=26 Score=28.85 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=31.3
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccc
Q 022231 215 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 264 (300)
Q Consensus 215 ~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~ 264 (300)
..+..++|++|.|+++ +|+ .+.| +|.++|.-- .++ |.|+.+
T Consensus 3 ~~L~~~igk~V~V~Lk--~G~--~~~G--~L~~~D~~M-Nlv--L~d~~E 43 (130)
T 1m5q_A 3 AELNNLLGREVQVVLS--NGE--VYKG--VLHAVDNQL-NIV--LANASN 43 (130)
T ss_dssp HHHHHTTTSEEEEEET--TSC--EEEE--EEEEECTTC-CEE--EEEEEC
T ss_pred hHHHHhCCCeEEEEEC--CCc--EEEE--EEEEEcccc-eeE--EeeEEE
Confidence 3577899999999996 664 7899 789999764 455 556654
No 29
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.63 E-value=23 Score=25.00 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=32.3
Q ss_pred cCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccCCCCCCCCcccccccceeEEeeccccce
Q 022231 220 FKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKR 293 (300)
Q Consensus 220 fiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr~k~~KGk~l~kkq~~~~l~Ipf~dI~K 293 (300)
..|..|+|.--|..| +.| ++.++|.+.+ ++.+.. -|++ + ++++|++++.|
T Consensus 9 ~~GD~V~V~~Gpf~g----~~G--~V~evd~e~v--~V~v~~---------fg~~----t---pvel~~~qv~K 58 (59)
T 2e6z_A 9 QPGDNVEVCEGELIN----LQG--KILSVDGNKI--TIMPKH---------EDLK----D---MLEFPAQELRK 58 (59)
T ss_dssp CTTSEEEECSSTTTT----CEE--EECCCBTTEE--EEEECC---------SSCC----S---CEEEETTTEEE
T ss_pred CCCCEEEEeecCCCC----CEE--EEEEEeCCEE--EEEEEe---------cCCC----c---eEEEcHHHEEE
Confidence 468899997544444 579 6789998854 433211 1221 1 38999999987
No 30
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=33.38 E-value=91 Score=24.13 Aligned_cols=62 Identities=6% Similarity=0.014 Sum_probs=40.6
Q ss_pred hcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccCCCCCCCCcccccccceeEEeeccccceeEEE
Q 022231 219 RFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLY 297 (300)
Q Consensus 219 RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr~k~~KGk~l~kkq~~~~l~Ipf~dI~KArL~ 297 (300)
.|+|..|.+...+.-| .|+| .|..+|...-++++. ++- ..|- +++.. .+++.=.||++.++.
T Consensus 6 ~~iGs~VSi~c~d~lG---vYQG--~i~~vd~~~~tItL~--~~f------~NG~---~~~s~-eVtls~~DI~~L~ii 67 (84)
T 2vc8_A 6 DWLGSIVSINCGDSLG---VYQG--RVSAVDQVSQTISLT--RPF------HNGV---KCLVP-EVTFRAGDITELKIL 67 (84)
T ss_dssp TTTTCEEEEECCTTTC---EEEE--EEEEEETTTTEEEEE--EEE------ETTE---ECSSS-EEEEEGGGCSEEEEE
T ss_pred cccCCEEEEEECCCce---EEEE--EEEEeccCCCeEEEe--hhh------hCCC---CCCCc-EEEEEecChhheEEE
Confidence 6899999999863344 4899 789999555444533 331 2232 23322 389999999998764
No 31
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=31.78 E-value=1.2e+02 Score=25.53 Aligned_cols=35 Identities=6% Similarity=-0.096 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCCeEEEEEEE-ecCCcEEEEEEcc
Q 022231 127 ALSIAHEVLLQLGDDIKLYAFK-ATPRGYVYVRLDK 161 (300)
Q Consensus 127 I~el~epvl~~~G~eLvdVe~~-~~~~~~LrV~IDk 161 (300)
|-+.+..++.++|+.+.+.... ..+.-.+++.++.
T Consensus 18 iva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~ 53 (195)
T 2nyi_A 18 IVHDFSWALKNISANVESSRMACLGGDFAMIVLVSL 53 (195)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEe
Confidence 4566778899999999999988 5555556777765
No 32
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=30.97 E-value=77 Score=25.83 Aligned_cols=54 Identities=9% Similarity=-0.003 Sum_probs=38.0
Q ss_pred cCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccCCCCCCCCcccccccceeEEeeccccceeE
Q 022231 220 FKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVT 295 (300)
Q Consensus 220 fiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr~k~~KGk~l~kkq~~~~l~Ipf~dI~KAr 295 (300)
-.|..|+|.-.|..| +.| .+.++|.+...+++.+.. -|++ -+++++|++|.++.
T Consensus 93 ~~Gd~VrI~~Gpf~g----~~g--~V~~vd~~k~~v~V~v~~---------~gr~-------tpvel~~~~v~~i~ 146 (152)
T 3p8b_B 93 EPGDLVEVIAGPFKG----QKA--KVVKIDESKDEVVVQFID---------AIVP-------IPVTIKGDYVRLIS 146 (152)
T ss_dssp CTTCEEEECSSTTTT----CEE--EEEEEETTTTEEEEEESS---------CSSC-------CEEEEEGGGEEEEE
T ss_pred CCCCEEEEeeecCCC----CEE--EEEEEeCCCCEEEEEEEe---------ccee-------EEEEECHHHEEEec
Confidence 379999998655666 478 679999887666655422 2442 14899999999875
No 33
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=29.29 E-value=23 Score=27.36 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=32.3
Q ss_pred CCCCCChHHH-hhcCCCeeEEEE--eecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccc
Q 022231 208 ERMLKVPDDL-GRFKEMPITVCY--EDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 264 (300)
Q Consensus 208 eRpLk~~~df-~RfiGr~VkV~l--~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~ 264 (300)
.+....|-+| .++++++++|++ ...+| +++.| +|.++|.-- .++ |.|+.+
T Consensus 11 ~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~g--r~~~G--~L~gfD~~m-Nlv--L~d~~E 63 (92)
T 3s6n_E 11 QKVMVQPINLIFRYLQNRSRIQVWLYEQVN--MRIEG--CIIGFDEYM-NLV--LDDAEE 63 (92)
T ss_dssp ---CCCHHHHHHHHHHHTCEEEEEESSSCS--SEEEE--EEEEECTTC-CEE--EEEEEE
T ss_pred ceeccCCHHHHHHHhCCCEEEEEEEEecCC--EEEEE--EEEEEcCcC-cEE--EeeeEE
Confidence 3445566444 689999999987 11255 47899 789998764 455 556544
No 34
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=28.95 E-value=93 Score=21.29 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=33.2
Q ss_pred CCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccCCCCCCCCcccccccceeEEeecccccee
Q 022231 221 KEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRV 294 (300)
Q Consensus 221 iGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr~k~~KGk~l~kkq~~~~l~Ipf~dI~KA 294 (300)
.|..|+|.--|..| +.| .+.+++.+.-.+.+.+. .=|+. .++++++++|.|+
T Consensus 7 ~Gd~V~V~~Gpf~g----~~g--~v~~v~~~k~~v~V~v~---------~~Gr~-------t~v~l~~~~vek~ 58 (58)
T 1nz9_A 7 EGDQVRVVSGPFAD----FTG--TVTEINPERGKVKVMVT---------IFGRE-------TPVELDFSQVVKA 58 (58)
T ss_dssp TTCEEEECSGGGTT----CEE--EEEEEETTTTEEEEEEE---------SSSSE-------EEEEECGGGEEEC
T ss_pred CCCEEEEeecCCCC----cEE--EEEEEcCCCCEEEEEEE---------eCCCE-------EEEEECHHHEEEC
Confidence 68889987655665 378 67889877533333321 12432 2588999998763
No 35
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=28.12 E-value=91 Score=24.98 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=47.0
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCeEEEEEEEecCCcEEEEEEcccC---CCCCCCChHHHHHHHHHHHHhhh
Q 022231 119 QGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLS---NKYGCPSMEELESYSQEYKKKLD 186 (300)
Q Consensus 119 ~~~~~~e~I~el~epvl~~~G~eLvdVe~~~~~~~~LrV~IDk~~---~~dggVsLDDCe~vSr~Is~~LD 186 (300)
..=.|.-+...++++++..++-+|-.|++..+.++..+|+|+..- .+++| .=|-.++-+.|.+.++
T Consensus 21 ~~C~w~lRa~~laqeLl~tF~~~l~eVsL~Pg~gG~FeV~vdg~lVwsRk~gG--FPd~keLkq~VRd~i~ 89 (107)
T 3dex_A 21 TQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQG--FPEPTAVKRLVRDRVA 89 (107)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTTEEEEEEEEESSSCEEEEETTEEEEEHHHHC--SCCHHHHHHHHHHTTC
T ss_pred CCCCChHHHHHHHHHHHHhcccccceEEEEeCCCceEEEEECCEEEEEecCCC--CCCHHHHHHHHHHHhC
Confidence 445689999999999999999999999988666788888775420 01222 2244556667777776
No 36
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=27.91 E-value=53 Score=26.36 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=30.1
Q ss_pred CcEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhhccccCCCCCCCeEEEEecCC
Q 022231 152 RGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPG 206 (300)
Q Consensus 152 ~~~LrV~IDk~~~~dggVsLDDCe~vSr~Is~~LD~~e~~d~I~~~Y~LEVSSPG 206 (300)
.+.+++||++ ...-|....+.+.+.+...|. +.|.|||-=..
T Consensus 7 ~~~L~LyVaG----~tp~S~~ai~nL~~i~e~~l~---------~~y~LeVIDv~ 48 (105)
T 1wwj_A 7 TYVLKLYVAG----NTPNSVRALKMLKNILEQEFQ---------GVYALKVIDVL 48 (105)
T ss_dssp EEEEEEEESS----CCHHHHHHHHHHHHHHHHHHT---------TSEEEEEEETT
T ss_pred ceEEEEEEeC----CCchHHHHHHHHHHHHHHhcC---------CCeEEEEEEcc
Confidence 4679999997 345567777777766666654 78999997543
No 37
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=23.86 E-value=60 Score=25.81 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=28.9
Q ss_pred HhhcC--CCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecccccc
Q 022231 217 LGRFK--EMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 265 (300)
Q Consensus 217 f~Rfi--Gr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~n 265 (300)
+.+++ |+.|.|++. +|+ .+.| +|.++|.-- .++ |.|+.+-
T Consensus 32 L~~~~~~~k~V~V~Lk--~gr--~~~G--~L~~fD~~m-Nlv--L~d~~E~ 73 (118)
T 1b34_B 32 LTQSVKNNTQVLINCR--NNK--KLLG--RVKAFDRHC-NMV--LENVKEM 73 (118)
T ss_dssp HHHHHHHTCEEEEEET--TSC--EEEE--EEEEECTTC-CEE--EEEEEEC
T ss_pred HHHHhcCCcEEEEEEC--CCc--EEEE--EEEEeCCce-EEE--EeCEEEE
Confidence 45666 599999996 665 6899 789998764 445 5576654
No 38
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=23.08 E-value=1.9e+02 Score=27.04 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=58.9
Q ss_pred CCCHHHHH--HHHHHHHHhhcCCeEEEEEEEecCCcEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhhccccCCCCCCC
Q 022231 120 GVPWGERA--LSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDD 197 (300)
Q Consensus 120 ~~~~~e~I--~el~epvl~~~G~eLvdVe~~~~~~~~LrV~IDk~~~~dggVsLDDCe~vSr~Is~~LD~~e~~d~I~~~ 197 (300)
|++|.+-+ -.++.++++++|+.=+ .+++++.-|.|++-- ....+-+++-.+++.+...|.+. .|+-
T Consensus 144 ~~~f~~v~~aA~~~r~~L~~lGL~~f---~KTSGgkGlHV~vPl----~~~~~~~~vr~fa~~~A~~l~~~-----~Pd~ 211 (309)
T 2fao_A 144 ALPWKRMLEATQLSLTLLDELGLRAF---LKTSGGKGMHLLVPL----ERRHGWDEVKDFAQAISQHLARL-----MPER 211 (309)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCCE---EEECSSSSEEEEEEC----CSCSCHHHHHHHHHHHHHHHHHH-----CTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcee---eEccCCCeeEEEEEc----CCCCCHHHHHHHHHHHHHHHHHh-----Ccce
Confidence 45676655 4446799999997544 334554446666644 34589999999999999999852 3566
Q ss_pred eEEEEecCCCCCCCCChHHHhhcCCCeeEEEE
Q 022231 198 LALEVSTPGAERMLKVPDDLGRFKEMPITVCY 229 (300)
Q Consensus 198 Y~LEVSSPGieRpLk~~~df~RfiGr~VkV~l 229 (300)
|+.+. .+...+.+|.|-|
T Consensus 212 ~t~~~--------------~k~~R~gkIfiDy 229 (309)
T 2fao_A 212 FSAVS--------------GPRNRVGKIFVDY 229 (309)
T ss_dssp EECSC--------------SGGGSTTSEEEEC
T ss_pred eehhh--------------hHhhCCCCEEEeC
Confidence 76654 4566778888888
No 39
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.91 E-value=1.3e+02 Score=22.28 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=29.3
Q ss_pred cCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEEEEecc
Q 022231 220 FKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLAD 261 (300)
Q Consensus 220 fiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~~~l~d 261 (300)
-.|..|..++. +|. .+.| ++.+++....+|+++..|
T Consensus 15 ~vGddVLA~wt--DGl--~Y~g--tI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 15 EEGQDVLARWS--DGL--FYLG--TIKKINILKQSCFIIFED 50 (66)
T ss_dssp CTTCEEEEECT--TSC--EEEE--EEEEEETTTTEEEEEETT
T ss_pred cCCCEEEEEEc--cCc--EEEe--EEEEEccCCcEEEEEEcc
Confidence 36889988884 885 7899 889999987788888765
No 40
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.58 E-value=1.4e+02 Score=22.29 Aligned_cols=45 Identities=7% Similarity=0.065 Sum_probs=29.2
Q ss_pred cCCCCCCCCChHHHhhcCCCeeEEEEeecCCCeeeEeeeeEEEEEeCCeeEEE
Q 022231 204 TPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICV 256 (300)
Q Consensus 204 SPGieRpLk~~~df~RfiGr~VkV~l~~ieG~kke~~GVl~L~~vDee~i~l~ 256 (300)
|.|..|. +. .-=.+.+|+.|+|+--|-.| +-| ++.++++....+.
T Consensus 5 ~gG~~~g-r~-~grd~liGktV~I~kGpyKG----~~G--iVkd~t~~~~RVE 49 (71)
T 2e70_A 5 SSGMSRG-RG-RRDNELIGQTVRISQGPYKG----YIG--VVKDATESTARVE 49 (71)
T ss_dssp CSCCCCC-SS-CCTTSSTTSEEEECSSTTTT----CEE--EEEEECSSCEEEE
T ss_pred cCCcCCC-CC-cCccccCCCEEEEeccCCCC----eEE--EEEECCCCeEEEE
Confidence 4455554 22 22348999999998654555 368 6789988876444
No 41
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=20.57 E-value=2.3e+02 Score=22.05 Aligned_cols=70 Identities=9% Similarity=0.147 Sum_probs=42.4
Q ss_pred hHHHhhcCCCeeEEEEeecCCCe--eeEeeeeEEEEEeCCeeEEEEEeccccccCCCCCCCCcccccccceeEEeecccc
Q 022231 214 PDDLGRFKEMPITVCYEDQDSDS--REKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMH 291 (300)
Q Consensus 214 ~~df~RfiGr~VkV~l~~ieG~k--ke~~GVl~L~~vDee~i~l~~~l~dVk~nr~k~~KGk~l~kkq~~~~l~Ipf~dI 291 (300)
.+++..++|+.|.++.+ .|++ .+..| .|.++=..- .++++.+ .+ ..+|. ...++...|+||
T Consensus 17 K~~l~~~vG~~V~l~An--~GRkK~~er~G--vL~etYPSv--FvV~ld~---~~--~~~~~------~~~~vSYSYsDV 79 (90)
T 3fb9_A 17 KEEIKAHEGQVVEMTLE--NGRKRQKNRLG--KLIEVYPSL--FIVEFGD---VE--GDKQV------NVYVESFTYSDI 79 (90)
T ss_dssp HHHHHHTTTSEEEEEEC--CSSSCCSCEEE--EEEEECSSE--EEEEESC---ST--TSCCS------SCEEEEEEHHHH
T ss_pred HHHHHHcCCCEEEEEec--CCcccEEEEEE--EEEEecCcE--EEEEEcC---cc--CcccC------CceEEEEEehhh
Confidence 45778999999999985 5663 35678 567766653 3444322 11 00110 012588999998
Q ss_pred ceeEEEEeC
Q 022231 292 KRVTLYLEY 300 (300)
Q Consensus 292 ~KArL~ieF 300 (300)
---++.+.|
T Consensus 80 LT~~v~i~~ 88 (90)
T 3fb9_A 80 LTEKNLIHY 88 (90)
T ss_dssp HTTSEEEEE
T ss_pred ccCceEEEe
Confidence 776666654
Done!