Query 022232
Match_columns 300
No_of_seqs 112 out of 126
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 09:01:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2546 Abl interactor ABI-1, 100.0 3.2E-34 7E-39 279.6 16.6 141 14-167 2-158 (483)
2 KOG2546 Abl interactor ABI-1, 99.4 1.5E-14 3.3E-19 142.5 -2.2 249 30-300 209-483 (483)
3 PF07815 Abi_HHR: Abl-interact 98.9 8.9E-10 1.9E-14 87.4 3.1 54 107-166 1-63 (79)
4 cd00193 t_SNARE Soluble NSF (N 77.8 10 0.00022 26.2 5.9 47 65-111 4-50 (60)
5 PF05739 SNARE: SNARE domain; 75.7 8.6 0.00019 27.6 5.2 44 68-111 5-48 (63)
6 smart00397 t_SNARE Helical reg 73.1 21 0.00047 24.9 6.6 51 61-111 6-56 (66)
7 KOG1830 Wiskott Aldrich syndro 71.3 6.7 0.00015 40.5 4.9 50 62-111 24-73 (518)
8 PF11945 WASH_WAHD: WAHD domai 68.2 18 0.00039 35.2 7.0 64 68-134 19-82 (297)
9 KOG3850 Predicted membrane pro 65.9 1.3E+02 0.0029 31.1 12.6 102 18-126 254-370 (455)
10 PLN03094 Substrate binding sub 53.3 94 0.002 31.3 9.2 84 26-111 258-346 (370)
11 PF15175 SPATA24: Spermatogene 52.7 1.4E+02 0.003 27.1 9.1 103 23-141 30-135 (153)
12 KOG3003 Molecular chaperone of 48.4 65 0.0014 30.9 6.8 32 57-88 107-142 (236)
13 PF10267 Tmemb_cc2: Predicted 47.3 2.3E+02 0.005 28.9 10.9 86 19-111 207-292 (395)
14 TIGR02492 flgK_ends flagellar 39.7 96 0.0021 29.7 6.7 58 55-113 127-184 (322)
15 PF12352 V-SNARE_C: Snare regi 38.8 61 0.0013 23.7 4.2 39 73-111 14-52 (66)
16 PRK10972 Z-ring-associated pro 38.6 55 0.0012 27.7 4.3 69 35-111 22-90 (109)
17 PF08397 IMD: IRSp53/MIM homol 38.6 3E+02 0.0065 24.9 9.7 66 27-100 144-211 (219)
18 PRK07521 flgK flagellar hook-a 37.9 96 0.0021 31.5 6.7 58 55-113 122-179 (483)
19 PRK13182 racA polar chromosome 36.3 3.2E+02 0.0069 24.7 9.1 83 28-111 44-141 (175)
20 PRK07739 flgK flagellar hook-a 34.4 1.2E+02 0.0025 31.2 6.7 58 55-113 139-196 (507)
21 PF10475 DUF2450: Protein of u 33.8 4.1E+02 0.0089 25.0 10.8 35 15-49 51-85 (291)
22 PRK06665 flgK flagellar hook-a 31.8 1.3E+02 0.0028 31.9 6.7 58 55-113 139-196 (627)
23 PRK07191 flgK flagellar hook-a 31.8 1.4E+02 0.003 30.1 6.7 58 55-113 127-184 (456)
24 PF05531 NPV_P10: Nucleopolyhe 30.1 1.3E+02 0.0028 24.2 4.9 26 86-111 40-65 (75)
25 PRK08471 flgK flagellar hook-a 28.6 1.6E+02 0.0034 31.2 6.7 58 55-113 132-189 (613)
26 PRK08147 flgK flagellar hook-a 28.5 1.7E+02 0.0036 30.2 6.7 58 55-113 128-185 (547)
27 PF05164 ZapA: Cell division p 27.2 76 0.0016 24.0 3.1 66 40-111 23-88 (89)
28 KOG4451 Uncharacterized conser 27.1 6.1E+02 0.013 24.9 10.3 106 17-127 5-113 (286)
29 PF08837 DUF1810: Protein of u 27.0 1E+02 0.0023 27.3 4.3 26 14-39 5-30 (139)
30 PF06013 WXG100: Proteins of 1 26.4 2.4E+02 0.0052 20.0 8.3 65 23-89 13-77 (86)
31 PRK05683 flgK flagellar hook-a 25.4 1.9E+02 0.0042 31.1 6.7 58 55-113 127-184 (676)
32 PRK06799 flgK flagellar hook-a 25.3 2.2E+02 0.0047 28.8 6.7 58 55-113 132-189 (431)
33 COG1516 FliS Flagellin-specifi 23.1 3.9E+02 0.0084 23.5 7.0 69 24-102 26-96 (132)
34 PRK06945 flgK flagellar hook-a 21.9 2.5E+02 0.0054 30.1 6.7 58 55-113 128-185 (651)
35 cd01056 Euk_Ferritin eukaryoti 21.7 2.7E+02 0.0058 23.8 5.8 57 26-109 88-145 (161)
36 PRK08871 flgK flagellar hook-a 21.6 2.6E+02 0.0056 29.9 6.7 58 55-113 130-187 (626)
37 PF04977 DivIC: Septum formati 21.2 3.4E+02 0.0073 19.9 5.6 41 94-134 30-71 (80)
38 TIGR02209 ftsL_broad cell divi 21.1 3.7E+02 0.008 20.3 6.6 47 91-137 34-80 (85)
39 PHA03185 UL14 tegument protein 20.9 90 0.002 29.5 2.8 36 96-143 66-101 (214)
40 PF04088 Peroxin-13_N: Peroxin 20.5 1.1E+02 0.0024 27.3 3.3 54 28-92 26-79 (158)
41 KOG1662 Mitochondrial F1F0-ATP 20.5 4.1E+02 0.0088 25.3 7.0 77 25-111 50-129 (210)
42 KOG4835 DNA-binding protein C1 20.4 6.3E+02 0.014 22.7 7.8 83 26-111 18-100 (144)
No 1
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.2e-34 Score=279.60 Aligned_cols=141 Identities=22% Similarity=0.347 Sum_probs=132.2
Q ss_pred chhhHhhhhhhhHHHHHHHHHhhhHH-------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 022232 14 TFDEVSMERSKSFVKALQELKNLRPQ-------LYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKL 86 (300)
Q Consensus 14 ~~~E~~m~~~~~F~~aL~ELk~lR~q-------L~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kl 86 (300)
-++|++| .++.||+++|.+ |.+||||||.||+|+.||+++||+||+|++||||+||||||+||+++
T Consensus 2 imaelq~-------lie~eIp~gR~al~~s~~nL~rVadycednYiQs~~kk~aleetk~~ttQslasvaYqIN~la~~~ 74 (483)
T KOG2546|consen 2 IMAELQS-------LIESEIPDGRKALRSSYDNLPRVADYCEDNYIQSADKKAALEETKAYTTQSLASVAYQINTLAGHA 74 (483)
T ss_pred cHHHHHH-------HHHHhccccHHHHHHHHHhhHhhhhhhhhchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789998 888999999987 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhchhhhhhhhhhhhhhhhhhhhhhhhHHhhhh-----ccCCCcceeecCCCCCCcccccc----CcCc
Q 022232 87 TDLLEQQTSDVSTMELRVSCMNQKLLTCQTYSNKEGLRQQQLLA-----FIPRHHKHYILPNSVNKKVHFSP----RVPT 157 (300)
Q Consensus 87 l~LLd~Q~~evs~mE~rVs~I~Qrv~tc~~~ihkEkvarreig~-----~~pr~hKryI~P~~~~k~~~~~~----~~~~ 157 (300)
++|||+|+.+|..||++|++|+|.| +|||||++|||||+ .++|+|| ||+|++.++++.|.. +.-+
T Consensus 75 l~mL~lQ~~~L~~mEs~vn~isq~V-----~ihkekvArreIg~lttnk~~~r~hk-iIap~nl~~~iryvrkPid~~mL 148 (483)
T KOG2546|consen 75 LRMLDLQAPQLRYMESQVNHISQTV-----DIHKEKVARREIGNLTTNKGLSRQHK-IIAPANLEVPIRYVRKPIDYSML 148 (483)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh-----eecchhhhhhhccceeeccccccccc-eeccccCCCCccceeccccceee
Confidence 9999999999999999999999999 99999999999996 5899999 999999999999955 6678
Q ss_pred cccccccCCC
Q 022232 158 DARQNHFSSR 167 (300)
Q Consensus 158 d~~~~~f~~r 167 (300)
|...|..+.+
T Consensus 149 d~igHGIr~~ 158 (483)
T KOG2546|consen 149 DDIGHGIRGS 158 (483)
T ss_pred eccccccccc
Confidence 8999987743
No 2
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=99.41 E-value=1.5e-14 Score=142.51 Aligned_cols=249 Identities=37% Similarity=0.472 Sum_probs=172.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhh--
Q 022232 30 LQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCM-- 107 (300)
Q Consensus 30 L~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I-- 107 (300)
..++|.+++++| +++|||+ |++...|+++.++.|+|++.|| ++|+|+++.+.-.+.+.|......++-+++|.
T Consensus 209 ~pv~pp~vP~~Y-~~~~~~~-~~~~s~~rm~~~n~~~~t~~~~---~~~~gt~~~sg~g~~g~q~a~~~~~~p~~~~~~~ 283 (483)
T KOG2546|consen 209 EPVLPPLVPSDY-APDYTEK-YLHQSPKRMASDNSKDYTVKAL---VDHLGTVESSGGGLFGHQNADGSTAPPRASCVQA 283 (483)
T ss_pred CccCCCCCcccc-ccccccc-ccccchhhhhhhcccccccccc---cccccccccccccccCCcCCCCCCCCCccccccc
Confidence 457899999999 9999999 9999999999999999999999 99999999999999999999999999876664
Q ss_pred ----------hhhhhhhhhhhhhhhhhHHhhhhccCCCcceeecCCCCCCccccccCcCccccccccCC--CCCCCCCCC
Q 022232 108 ----------NQKLLTCQTYSNKEGLRQQQLLAFIPRHHKHYILPNSVNKKVHFSPRVPTDARQNHFSS--RLQPTGIPA 175 (300)
Q Consensus 108 ----------~Qrv~tc~~~ihkEkvarreig~~~pr~hKryI~P~~~~k~~~~~~~~~~d~~~~~f~~--r~~~~~tp~ 175 (300)
.|.++||..|+++++++++++.+.+|=+|+++|.|...++++++.+...+|..+++.++ + .++-.
T Consensus 284 ~q~~~~~~~~~~~~~t~~~~~s~~~lr~~q~~a~~p~q~~~~~~P~~~n~~vs~aP~pp~~~qq~~q~~~~~---~~~~~ 360 (483)
T KOG2546|consen 284 IQPPVCVCSFHQQLLTCRGYISKPGLRQQQLLAVIPLQPKHPIPPNSVNKRVSFAPPPPTDTQQNQQQPISR---GVMSS 360 (483)
T ss_pred cCCceeeeecccCccccccccccccccchhhhcccccccCCCCCCccccCccccCCCCCcchhhchhhHHhh---hhhhh
Confidence 57788999999999999999999999999999999999999999998888888888553 2 11111
Q ss_pred cccccccccCccc-cCCCCcccccccccCCCccccccccccchhhhcccccccccccCCCCCCcccc--ccc-------c
Q 022232 176 SKTLSWHLASETK-STSKGTQQALTSSEDRKTSGVFHLLDNEENKLTKSSAVSAQLSSGGPASSALV--QSF-------G 245 (300)
Q Consensus 176 s~t~~~hl~s~~~-~~~~~~~~~~~~t~~~k~~~~~~l~~~e~~~~~~~sp~~~~l~~~~~~s~~~~--~~~-------~ 245 (300)
..++.-|--|+.. .+.....|.-...-+.+.-+. +|.| ..++.++..++-.+-+.=.++. -++ +
T Consensus 361 ~~~i~~~~tsppp~~~~~~~~~~dlppPp~~~~~~---~g~e---e~st~~~~~~~ap~sp~w~p~syLEkVv~iydy~~ 434 (483)
T KOG2546|consen 361 QRNLNRNDTSPPPSPPSNQPGPDDLPPPPPKSLSD---LGRE---EKSTLPQPPPVAPSSPAWVPTSYLEKVVAIYDYTA 434 (483)
T ss_pred ccccccccCCCCCCCccccCCCCCCCCCCCCcccc---cccc---ccccCCCCCCCCCCCcccccHHHHHHHHhhccccc
Confidence 1221111111111 111111122222222332222 2222 1334444444433332211111 000 1
Q ss_pred cccc--cccCCCcccCccccCCCCccccccCCcchHHHHHHHHhhccccccccCCCC
Q 022232 246 VARR--DAMEGNKTLAPFRSFDNPRREIVRAPVRSKSVLSAFFVKQKTSKLKAGYVS 300 (300)
Q Consensus 246 ~~~r--~~~e~~k~~s~~~s~d~~~re~~q~p~~sK~~l~a~~~~~ks~K~k~~~~~ 300 (300)
.++- -++|+.+...+.. -|++..|+++.++ .+||.+.+..++++ +|+
T Consensus 435 ~KddeLsf~E~ailyv~kk-nddgw~EgV~~~V------TglFpgnyve~~~~-y~~ 483 (483)
T KOG2546|consen 435 DKDDELSFAEGAILYVLKK-NDDGWYEGVQDGV------TGLFPGNYVEPLKA-YVS 483 (483)
T ss_pred ccccccccccccEEEEEEe-cCCcchhheecCc------ceeccCcccccccc-ccC
Confidence 1111 1257777666666 3444599999998 89999999999988 654
No 3
>PF07815 Abi_HHR: Abl-interactor HHR; InterPro: IPR012849 The region is found towards the N terminus of a number of adaptor proteins that interact with Abl-family tyrosine kinases []. More specifically, it is termed the homeo-domain homologous region (HHR), as it is similar to the DNA-binding region of homeo-domain proteins []. Other homeo-domain proteins have been implicated in specifying positional information during embryonic development, and in the regulation of the expression of cell-type specific genes []. The Abl-interactor proteins are thought to coordinate the cytoplasmic and nuclear functions of the Abl-family kinases, and seem to be involved in cytoskeletal reorganisation, but their precise role remains unclear []. ; GO: 0005737 cytoplasm; PDB: 3P8C_F.
Probab=98.90 E-value=8.9e-10 Score=87.42 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=30.9
Q ss_pred hhhhhhhhhhhhhhhhhhHHhhhh-----ccCCCcceeecCCCCCCcccccc----CcCccccccccCC
Q 022232 107 MNQKLLTCQTYSNKEGLRQQQLLA-----FIPRHHKHYILPNSVNKKVHFSP----RVPTDARQNHFSS 166 (300)
Q Consensus 107 I~Qrv~tc~~~ihkEkvarreig~-----~~pr~hKryI~P~~~~k~~~~~~----~~~~d~~~~~f~~ 166 (300)
|+|.| +||+|||||||||+ +.+|.|| +|+|++.|++..|.+ +..+|+.+|.++.
T Consensus 1 i~q~v-----~iHkEKvARReIG~lT~~k~~~r~~k-ii~P~~~E~~~~Y~RkPIdys~LDdvGHGvk~ 63 (79)
T PF07815_consen 1 ISQTV-----DIHKEKVARREIGSLTTNKNTSRQHK-IIAPANPEPPQRYVRKPIDYSILDDVGHGVKS 63 (79)
T ss_dssp HHHHH-----HHHHHHHHHHHHHTT-EE-------S-EE--SS-------------TTTTTTTTT----
T ss_pred Cchhh-----hhHHHHHHHHHHhhcccccccCCccc-eeCCCCCCCCCCceeccCccccccccCccccc
Confidence 68999 99999999999996 4789999 999999999999966 7789999999774
No 4
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=77.76 E-value=10 Score=26.22 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 65 KDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 65 K~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
.+-.++.|...+..|+.++..+..++..|...|..++..|.....++
T Consensus 4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~ 50 (60)
T cd00193 4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNV 50 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999998888777
No 5
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=75.67 E-value=8.6 Score=27.60 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 68 AVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 68 a~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
.++.|...+..|+.++..|..+++.|..-|..++..|....-+|
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l 48 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENL 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999988888
No 6
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=73.05 E-value=21 Score=24.87 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 61 LDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 61 LEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
..+..+-..+.|...+..+..++..+..+|+.|...|..++..+......+
T Consensus 6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~ 56 (66)
T smart00397 6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNL 56 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455566778899999999999999999999999999999999998888777
No 7
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=71.27 E-value=6.7 Score=40.53 Aligned_cols=50 Identities=14% Similarity=0.313 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 62 DNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 62 EeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
.|+.=-|--.|||++-||++|+.+-.+++-+=..+......|+|.|.+||
T Consensus 24 ~ELecvtN~TLaniIRQLsSLSKhAEdIFGELf~da~~f~~R~NSLQ~RI 73 (518)
T KOG1830|consen 24 SELECVTNITLANIIRQLSSLSKHAEDIFGELFNDANNFNHRANSLQERI 73 (518)
T ss_pred cceeeecchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 34444455679999999999999999999999999999999999999998
No 8
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=68.15 E-value=18 Score=35.15 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhhhhhhhhhhhHHhhhhccCC
Q 022232 68 AVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLTCQTYSNKEGLRQQQLLAFIPR 134 (300)
Q Consensus 68 a~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~tc~~~ihkEkvarreig~~~pr 134 (300)
++.-++...+||+.|+..+..-++.+..+. -.++..|.+|+-.||.-|++-+-+++.|-...|.
T Consensus 19 ti~qi~~aL~~L~~v~~diF~rI~~Rv~~~---~~~l~~i~~Ri~~~qaKi~~l~gs~kAi~vfs~a 82 (297)
T PF11945_consen 19 TILQIADALEYLDKVSNDIFSRISARVERN---RERLQAIQQRIEVAQAKIEKLQGSKKAITVFSPA 82 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCCccEEEeCcc
Confidence 445566677899999999988888865554 4689999999999999999988888887776554
No 9
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=65.88 E-value=1.3e+02 Score=31.11 Aligned_cols=102 Identities=22% Similarity=0.308 Sum_probs=72.2
Q ss_pred HhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhh
Q 022232 18 VSMERSKSFVKALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDV 97 (300)
Q Consensus 18 ~~m~~~~~F~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~ev 97 (300)
+-|+++..|+.++.||.+.+.-+....|=.|.- |-...-+. .|..|+|--==|---.|--.|++++++|-+|+
T Consensus 254 ~~~s~~~~l~aileeL~eIk~~q~~Leesye~L------ke~~krdy-~fi~etLQEERyR~erLEEqLNdlteLqQnEi 326 (455)
T KOG3850|consen 254 PYHSQGAALDAILEELREIKETQALLEESYERL------KEQIKRDY-KFIAETLQEERYRYERLEEQLNDLTELQQNEI 326 (455)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 667888889999999999888766665544321 22222222 35668888888888888888999999988877
Q ss_pred hhch-------hhhhh--------hhhhhhhhhhhhhhhhhhHH
Q 022232 98 STME-------LRVSC--------MNQKLLTCQTYSNKEGLRQQ 126 (300)
Q Consensus 98 s~mE-------~rVs~--------I~Qrv~tc~~~ihkEkvarr 126 (300)
..+- -+|.+ |...+-+||..|-|--+.||
T Consensus 327 ~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 327 ANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554 44433 44556789999988888877
No 10
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=53.32 E-value=94 Score=31.28 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHhhhhhhhc
Q 022232 26 FVKALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTD-----LLEQQTSDVSTM 100 (300)
Q Consensus 26 F~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~-----LLd~Q~~evs~m 100 (300)
+..++++++.++.+|...++--..-= ..-+....|+++..++ .+|+....||..+...+++ .|++....+..+
T Consensus 258 ~a~~~~~~~~ll~~l~~l~~~l~~ll-~~l~~~~lL~Nle~lt-~~LA~as~~l~~l~~~l~~p~~~~~L~qtl~sl~~t 335 (370)
T PLN03094 258 AADLMEEARPLLLKIQAMAEDLQPLL-SEVRDSGLLKEVEKLT-RVAAEASEDLRRLNSSILTPENTELLRQSIYTLTKT 335 (370)
T ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHH-hhcchhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 57788888888888888887766543 3223378888888775 7888888999999777665 455555555555
Q ss_pred hhhhhhhhhhh
Q 022232 101 ELRVSCMNQKL 111 (300)
Q Consensus 101 E~rVs~I~Qrv 111 (300)
-..++.+..-|
T Consensus 336 ~~ni~~vs~dv 346 (370)
T PLN03094 336 LKHIESISSDI 346 (370)
T ss_pred HHHHHHHHHHH
Confidence 56666666555
No 11
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=52.73 E-value=1.4e+02 Score=27.05 Aligned_cols=103 Identities=24% Similarity=0.244 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--Hhhhhhhhc
Q 022232 23 SKSFVKALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLE--QQTSDVSTM 100 (300)
Q Consensus 23 ~~~F~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd--~Q~~evs~m 100 (300)
+.-..-||.|+-=|-.||.+...-||+.+- .-|.+|+-|+. -.|+|-+=-+.+-.-+- .|.+.|+.=
T Consensus 30 ~EKLqfAlgeieiL~kQl~rek~afe~a~~--~vk~k~~~Es~---------k~dqL~~KC~~~~~ei~c~kqed~LngK 98 (153)
T PF15175_consen 30 SEKLQFALGEIEILSKQLEREKLAFEKALG--SVKSKVLQESS---------KKDQLITKCNEIESEIICHKQEDILNGK 98 (153)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhcchhhhhccc
Confidence 344556899999999999999999998762 33455555543 34555555555544455 778888999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhHHhhh-hccCCCcceeec
Q 022232 101 ELRVSCMNQKLLTCQTYSNKEGLRQQQLL-AFIPRHHKHYIL 141 (300)
Q Consensus 101 E~rVs~I~Qrv~tc~~~ihkEkvarreig-~~~pr~hKryI~ 141 (300)
|+.|++|.|++ .-.|+...++.+- ..+-+.+-+||+
T Consensus 99 e~~I~eLk~~l-----~sQK~~~Hk~qlsdl~Iqk~Qe~Y~a 135 (153)
T PF15175_consen 99 ENEIKELKQRL-----ASQKQNFHKRQLSDLRIQKQQERYMA 135 (153)
T ss_pred ccchHHHHhhh-----HHHHHHHhhccchhhHHhhHHHHHHH
Confidence 99999999999 4444443223322 133334445553
No 12
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=48.43 E-value=65 Score=30.85 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHH
Q 022232 57 KQMVLDNLKDYAVRALVN----AVDHLGTVAYKLTD 88 (300)
Q Consensus 57 Kq~aLEeTK~Ya~QALaS----VayhIgtvA~kll~ 88 (300)
-+...|++|.|++|+.+- |||-||.....|..
T Consensus 107 ~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~e 142 (236)
T KOG3003|consen 107 TIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKE 142 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 345689999999988665 77777766555543
No 13
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=47.27 E-value=2.3e+02 Score=28.91 Aligned_cols=86 Identities=20% Similarity=0.304 Sum_probs=60.1
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhh
Q 022232 19 SMERSKSFVKALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVS 98 (300)
Q Consensus 19 ~m~~~~~F~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs 98 (300)
.-+....|..++.||.+.|....+..+=+|.- |....-+. .|..++|-.--|..-.|=..|+++++++-+|+.
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~~~L~~~~e~L------k~~~~~e~-~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~ 279 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQSRLEESIEKL------KEQYQREY-QFILEALQEERYRYERLEEQLNDLTELHQNEIY 279 (395)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677888888888888766665544421 22223232 477899999999999999999999999888887
Q ss_pred hchhhhhhhhhhh
Q 022232 99 TMELRVSCMNQKL 111 (300)
Q Consensus 99 ~mE~rVs~I~Qrv 111 (300)
.+-..++|+.-+|
T Consensus 280 ~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 280 NLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHhHHHHH
Confidence 7766666666543
No 14
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=39.68 E-value=96 Score=29.71 Aligned_cols=58 Identities=10% Similarity=0.287 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
..++.|++.++.++ +.+=....+|..+-..+..-++....+|..+-.+|..|++.|..
T Consensus 127 ~~r~~vl~~a~~l~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 127 ALRQAVLESAQALA-NSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888877 77888888888888888888888899999999999999988843
No 15
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=38.82 E-value=61 Score=23.68 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=34.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 73 VNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 73 aSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
-.+++.+-.+|...+.-|..|...+..+..+|..+.+.+
T Consensus 14 ~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l 52 (66)
T PF12352_consen 14 HRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNL 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888899999999999999999999999998888
No 16
>PRK10972 Z-ring-associated protein; Provisional
Probab=38.64 E-value=55 Score=27.67 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 35 NLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 35 ~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
+-+..|..||+|.+...-.-.++-.++. +-.-++=|=.| +++.|+..=.........++.+|..|.+++
T Consensus 22 ~e~~~L~~AA~~Ld~km~~ir~~~kv~~-~EriavmaALN-------l~~ELl~~k~~~~~~~~~~~~rI~~L~~~l 90 (109)
T PRK10972 22 EQRDALNQAAEDLNQRLQDLKERTRVTN-TEQLVFIAALN-------ICYELAQEKAKTRDYAANMEQRIRMLQQTI 90 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH-------HHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3466799999999876644333333332 22233333333 455555554444566678888888888888
No 17
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=38.58 E-value=3e+02 Score=24.88 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhc
Q 022232 27 VKALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYA--VRALVNAVDHLGTVAYKLTDLLEQQTSDVSTM 100 (300)
Q Consensus 27 ~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya--~QALaSVayhIgtvA~kll~LLd~Q~~evs~m 100 (300)
..+++++.+....|. +||...| +...+||=+.|. +.-+.+|++|+-++-.+-..+|+.-.....+.
T Consensus 144 ~~~~~~v~~~~~ele---~~~~~~~-----r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~~~ 211 (219)
T PF08397_consen 144 KEALQDVTERQSELE---EFEKQSL-----REALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQEL 211 (219)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344666666666666 5677766 889999999987 78888888888888877666776655554443
No 18
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=37.85 E-value=96 Score=31.52 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
.-++.|+++.+.++ +.+-.+..+|..+-..+.+-++.+..+|..+-.+|..|+++|..
T Consensus 122 ~~R~~vl~~a~~L~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 179 (483)
T PRK07521 122 TLAQAAVDAAQDLA-NSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVS 179 (483)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888887 77888889999999999999999999999999999999999854
No 19
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=36.28 E-value=3.2e+02 Score=24.66 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=61.2
Q ss_pred HHHHHHHhhhHH---HHHHHH--HHHH----hcCCc----hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHH
Q 022232 28 KALQELKNLRPQ---LYSAAE--YCEK----SYLHS----EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLT--DLLEQ 92 (300)
Q Consensus 28 ~aL~ELk~lR~q---L~~aAd--YCE~----nYl~s----~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll--~LLd~ 92 (300)
.-|+.|+.+|.. |..+.. |-+. .+... ++...+|++-.+...+=+...-.++..+|.++- +||..
T Consensus 44 ~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~h 123 (175)
T PRK13182 44 QLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQH 123 (175)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 567888888887 666644 4121 12222 255677888888888888888888888888774 57766
Q ss_pred hhhhhhhchhhhhhhhhhh
Q 022232 93 QTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 93 Q~~evs~mE~rVs~I~Qrv 111 (300)
=.|+.+|-.++..|.|+|
T Consensus 124 -r~e~ee~~~~l~~le~~~ 141 (175)
T PRK13182 124 -RREMEEMLERLQKLEARL 141 (175)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 678999999999999999
No 20
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=34.38 E-value=1.2e+02 Score=31.20 Aligned_cols=58 Identities=10% Similarity=0.236 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
..++.|++..+.++ +.+=.+..+|..+-..+.+-++.+..+|..+-.+|..|++.|..
T Consensus 139 ~~r~~vl~~a~~La-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 196 (507)
T PRK07739 139 GARSVVRQRAQALA-ETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAK 196 (507)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999998887 67888999999999999999999999999999999999999843
No 21
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.79 E-value=4.1e+02 Score=25.03 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=29.8
Q ss_pred hhhHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 022232 15 FDEVSMERSKSFVKALQELKNLRPQLYSAAEYCEK 49 (300)
Q Consensus 15 ~~E~~m~~~~~F~~aL~ELk~lR~qL~~aAdYCE~ 49 (300)
+....++++..|..++.++.+++.+|..+...|.+
T Consensus 51 L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~ 85 (291)
T PF10475_consen 51 LSREISEKSDSFFQAMSSVQELQDELEEALVICKN 85 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999999999999999999974
No 22
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.83 E-value=1.3e+02 Score=31.88 Aligned_cols=58 Identities=12% Similarity=0.281 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
..++.|++..+.++ +.+=.+..+|..+-..+.+-|+.+..+|..+-.+|..|++.|..
T Consensus 139 a~R~~vl~~A~~La-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 139 AERQVVLERAQSLG-ERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888887 77888888999999999999999999999999999999998843
No 23
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.79 E-value=1.4e+02 Score=30.13 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
..++.|++..+.++ +.+=.+..+|..+-..+..-++.+..+|..+-.+|..|++.|..
T Consensus 127 ~~r~~vl~~a~~la-~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 184 (456)
T PRK07191 127 PMRQQVIESANAMA-LRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILK 184 (456)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888887 77888888888888999999999999999999999999999854
No 24
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=30.14 E-value=1.3e+02 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 86 LTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 86 ll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
+..-||.|...+..++.+|+.|...+
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55668999999999999999998877
No 25
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.65 E-value=1.6e+02 Score=31.24 Aligned_cols=58 Identities=14% Similarity=0.302 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
..++.|++..+.++ +.+-++..+|..+-..+.+-|..+..+|..+-.+|..|+++|..
T Consensus 132 ~~R~~vl~~a~~L~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~~ 189 (613)
T PRK08471 132 AQKQALAQKTETLT-NNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIKE 189 (613)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34777888888876 77888888899999999999999999999999999999988854
No 26
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.47 E-value=1.7e+02 Score=30.16 Aligned_cols=58 Identities=5% Similarity=0.167 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
..++.|++..+.++ +.+=++..+|..+-..+..-|+.+..+|..+-.+|..|+++|..
T Consensus 128 ~~r~~vl~~a~~l~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 185 (547)
T PRK08147 128 AARQALIGKAEGLV-NQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITR 185 (547)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888876 77888888899999999999999999999999999999999954
No 27
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=27.24 E-value=76 Score=24.00 Aligned_cols=66 Identities=29% Similarity=0.320 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 40 LYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 40 L~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
|.+||+|.+..+-.-..+-..++. ...++=|..++++.+-.+-.....+.+ +..++.+|..|.+++
T Consensus 23 l~~~a~~i~~~i~~~~~~~~~~~~-~~~~vlaaLnla~e~~~~~~~~~~~~~-----~~~l~~~i~~L~~~l 88 (89)
T PF05164_consen 23 LRKAAELINEKINEIKKKYPKLSP-ERLAVLAALNLADELLKLKRELDELEE-----LERLEERIEELNERL 88 (89)
T ss_dssp HHHHHHHHHHHHHHHCTTCCTSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHhh
Confidence 566666666555332222222222 224455677777776665555554444 456666777666665
No 28
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=27.08 E-value=6.1e+02 Score=24.87 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=62.5
Q ss_pred hHhhhhhhhHHHHHHHHHhhhHH---HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 022232 17 EVSMERSKSFVKALQELKNLRPQ---LYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQ 93 (300)
Q Consensus 17 E~~m~~~~~F~~aL~ELk~lR~q---L~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q 93 (300)
+..+-...+|-.-|.-|++.|+. +++.-+-|-.-.--.++++.-||+ |-..-=+-.-.-+|.|.. ++.+-.-
T Consensus 5 ~i~~s~e~~~~~Kle~ik~Ir~ktl~~ek~k~r~~~ei~a~~~ee~~lee---y~~em~~lL~ekm~Hvee--lr~iHad 79 (286)
T KOG4451|consen 5 PIPRSSEFLFLQKLELIKSIRSKTLFFEKFKERCRFEICAFTWEEENLEE---YELEMGVLLLEKMGHVEE--LREIHAD 79 (286)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH---HHHHHHHHHHHHHhhHHH--HHHHHHH
Confidence 33444444565666666666665 777777777666666777765554 433322222222232221 3444455
Q ss_pred hhhhhhchhhhhhhhhhhhhhhhhhhhhhhhHHh
Q 022232 94 TSDVSTMELRVSCMNQKLLTCQTYSNKEGLRQQQ 127 (300)
Q Consensus 94 ~~evs~mE~rVs~I~Qrv~tc~~~ihkEkvarre 127 (300)
++++...+.++..+.|+++.|..-.+-|-+.++.
T Consensus 80 iN~men~ikq~k~~~~~~~~~~~r~~eey~~lk~ 113 (286)
T KOG4451|consen 80 INEMENDIKQVKALEQHITSCNGRKGEEYMELKS 113 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 6667777777788889999998776666555543
No 29
>PF08837 DUF1810: Protein of unknown function (DUF1810); InterPro: IPR014937 This is a family of uncharacterised proteins. The structure of one of the members in this family has been solved and it adopts a mainly alpha helical structure. ; PDB: 2JEK_A.
Probab=26.97 E-value=1e+02 Score=27.33 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=16.8
Q ss_pred chhhHhhhhhhhHHHHHHHHHhhhHH
Q 022232 14 TFDEVSMERSKSFVKALQELKNLRPQ 39 (300)
Q Consensus 14 ~~~E~~m~~~~~F~~aL~ELk~lR~q 39 (300)
|++-..--|.-.|..+|.||+++|++
T Consensus 5 ~L~RFv~AQ~~~y~~al~El~~GrK~ 30 (139)
T PF08837_consen 5 DLQRFVDAQEPVYETALAELRAGRKR 30 (139)
T ss_dssp -THHHHHHHTTTHHHHHHHHHTT---
T ss_pred hHHHHHHhhhhhHHHHHHHHHcCCCC
Confidence 34444444566999999999999997
No 30
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=26.44 E-value=2.4e+02 Score=20.02 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 022232 23 SKSFVKALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDL 89 (300)
Q Consensus 23 ~~~F~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~L 89 (300)
...|.....+|.+.-.+|....+++...|- .+ -..++.+...-...++..+..-|+.++..|...
T Consensus 13 a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~-G~-a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~ 77 (86)
T PF06013_consen 13 AQQLQAQADELQSQLQQLESSIDSLQASWQ-GE-AADAFQDKFEEWNQAFRQLNEALEELSQALRQA 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGBT-SS-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888999999999999999999977775 33 333444444444456666666666555555443
No 31
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.35 E-value=1.9e+02 Score=31.14 Aligned_cols=58 Identities=12% Similarity=0.274 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
..++.||++.+.++ +.+=++..+|..+-..+..-|+.+..+|..+-.+|..|++.|..
T Consensus 127 aaRq~vl~~A~~La-~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~ 184 (676)
T PRK05683 127 AARQLLLTQAQGLS-KRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQ 184 (676)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888877 67788888888888888888888888898888889888888843
No 32
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.26 E-value=2.2e+02 Score=28.76 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
..++.|++..+.++ +.+-++..+|..+-..+.+-++.+..+|..+-.+|..|+++|..
T Consensus 132 ~~r~~vl~~a~~l~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 189 (431)
T PRK06799 132 NYYDTLISETGKFT-SQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKIGQ 189 (431)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888887765 77778888888888888888888999999999999999998854
No 33
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=23.14 E-value=3.9e+02 Score=23.54 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhhhch
Q 022232 24 KSFVKALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHL--GTVAYKLTDLLEQQTSDVSTME 101 (300)
Q Consensus 24 ~~F~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhI--gtvA~kll~LLd~Q~~evs~mE 101 (300)
|+|+.++++|+.+|..+.+- +|- .|-..+.-.-+-.+ .|-+.-|+= |.+|.+|..|-|-...++.++.
T Consensus 26 MLyeg~l~~l~~A~~aie~~-~i~--------~k~~~i~ka~~Ii~-eL~~~Ld~E~Ggeia~nL~~LY~y~~~rL~~AN 95 (132)
T COG1516 26 MLYEGALKFLKRAKEAIEQE-DIE--------EKNESIDKAIDIIT-ELRASLDYEKGGEIAQNLDALYDYMVRRLVQAN 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cHH--------HHHHHHHHHHHHHH-HHHHhcCHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999887743 332 34455666666555 777777777 9999999999998877776654
Q ss_pred h
Q 022232 102 L 102 (300)
Q Consensus 102 ~ 102 (300)
.
T Consensus 96 l 96 (132)
T COG1516 96 L 96 (132)
T ss_pred h
Confidence 3
No 34
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.88 E-value=2.5e+02 Score=30.07 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
..++.||+..+.++ +.+=++..+|..+-..+..-|+....+|..+-.+|..|+++|..
T Consensus 128 ~~Rq~vl~~a~~La-~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~ 185 (651)
T PRK06945 128 SARQTMLSNAQTLA-SQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAK 185 (651)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888877 67788888888888888888888899999999999999988854
No 35
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=21.74 E-value=2.7e+02 Score=23.76 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHhhhhhhhchhhh
Q 022232 26 FVKALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTD-LLEQQTSDVSTMELRV 104 (300)
Q Consensus 26 F~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~-LLd~Q~~evs~mE~rV 104 (300)
|..+|+-=+.+...+..++..|+.. +||++..+. .. +|+.|..+++.+..-+
T Consensus 88 l~~al~~E~~vt~~~~~l~~~A~~~--------------~D~~t~~fl-------------~~~fl~eQ~e~~~~~~~~l 140 (161)
T cd01056 88 LELALDLEKLVNQSLLDLHKLASEH--------------NDPHLADFL-------------ESEFLEEQVESIKKLAGYI 140 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHc--------------CCHhHHHHH-------------HHHhhHHHHHHHHHHHHHH
Confidence 4566666667777777788888755 466655443 33 8899999999888877
Q ss_pred hhhhh
Q 022232 105 SCMNQ 109 (300)
Q Consensus 105 s~I~Q 109 (300)
+.|+.
T Consensus 141 ~~l~~ 145 (161)
T cd01056 141 TNLKR 145 (161)
T ss_pred HHHHH
Confidence 77763
No 36
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.62 E-value=2.6e+02 Score=29.92 Aligned_cols=58 Identities=10% Similarity=0.194 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
..++.||++.+..+ +.+-++..+|..+-..++.-|+....+|..+-.+|..|++.|..
T Consensus 130 aaRq~vl~~A~~La-~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~~ 187 (626)
T PRK08871 130 GARKVVLEKAKLIS-QTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMMR 187 (626)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44777888887775 66777777777777788888888888888888888888888743
No 37
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.17 E-value=3.4e+02 Score=19.86 Aligned_cols=41 Identities=7% Similarity=0.121 Sum_probs=22.5
Q ss_pred hhhhhhchhhhhhhhhhhhhh-hhhhhhhhhhHHhhhhccCC
Q 022232 94 TSDVSTMELRVSCMNQKLLTC-QTYSNKEGLRQQQLLAFIPR 134 (300)
Q Consensus 94 ~~evs~mE~rVs~I~Qrv~tc-~~~ihkEkvarreig~~~pr 134 (300)
..++.++..++..+++.+-.- ...-.-|++||..+|-.-|-
T Consensus 30 ~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~ 71 (80)
T PF04977_consen 30 QKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPG 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCC
Confidence 444444444444444444333 23344588999888865554
No 38
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.09 E-value=3.7e+02 Score=20.26 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=26.5
Q ss_pred HHhhhhhhhchhhhhhhhhhhhhhhhhhhhhhhhHHhhhhccCCCcc
Q 022232 91 EQQTSDVSTMELRVSCMNQKLLTCQTYSNKEGLRQQQLLAFIPRHHK 137 (300)
Q Consensus 91 d~Q~~evs~mE~rVs~I~Qrv~tc~~~ihkEkvarreig~~~pr~hK 137 (300)
+..-.++.+++.+...|...+-.-...-.-|++||.++|...|..-.
T Consensus 34 ~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~lgM~~p~~~~ 80 (85)
T TIGR02209 34 QKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQLGMKLPDANI 80 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCCCCCCc
Confidence 33334444444444444444433333445688999999987776544
No 39
>PHA03185 UL14 tegument protein; Provisional
Probab=20.86 E-value=90 Score=29.49 Aligned_cols=36 Identities=17% Similarity=0.501 Sum_probs=28.4
Q ss_pred hhhhchhhhhhhhhhhhhhhhhhhhhhhhHHhhhhccCCCcceeecCC
Q 022232 96 DVSTMELRVSCMNQKLLTCQTYSNKEGLRQQQLLAFIPRHHKHYILPN 143 (300)
Q Consensus 96 evs~mE~rVs~I~Qrv~tc~~~ihkEkvarreig~~~pr~hKryI~P~ 143 (300)
-|..++.++.+|.+|| .|.++++.|+.. |+||+.|.
T Consensus 66 Rve~VeQKar~Iq~rV--------EeQ~a~r~iL~~----hRRyL~pd 101 (214)
T PHA03185 66 RLEMLRQHAACVKIRV--------EEQAERRDFLIA----HRRYLDPA 101 (214)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHH----HHHhcChH
Confidence 6777888888888888 677777777754 78899986
No 40
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=20.51 E-value=1.1e+02 Score=27.33 Aligned_cols=54 Identities=17% Similarity=0.328 Sum_probs=43.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 022232 28 KALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQ 92 (300)
Q Consensus 28 ~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~ 92 (300)
-+.+-|...-.+.-.+|.=-|.+|...- + .=.|+++||+|.|.|=..|-++|..
T Consensus 26 ~tFq~IESIV~Afg~fAqMLESTy~Ath-------s----SF~a~v~VAeqF~~Lk~~lgs~l~i 79 (158)
T PF04088_consen 26 ATFQSIESIVGAFGGFAQMLESTYMATH-------S----SFFAMVSVAEQFGRLKNTLGSILGI 79 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888999999999995322 1 2379999999999999999998887
No 41
>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]
Probab=20.45 E-value=4.1e+02 Score=25.26 Aligned_cols=77 Identities=16% Similarity=0.282 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhhhHHHH---HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhch
Q 022232 25 SFVKALQELKNLRPQLY---SAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTME 101 (300)
Q Consensus 25 ~F~~aL~ELk~lR~qL~---~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE 101 (300)
..+++.+||-.+++-+. ++++|.-+-|+.-++|..+++..=+=. -+.....||+.+|-+ ...+..++
T Consensus 50 ~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~~---------~~~~~t~NflnlLae-NgRL~~l~ 119 (210)
T KOG1662|consen 50 KLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEKL---------KLAPLTKNFLNLLAE-NGRLNNLT 119 (210)
T ss_pred hHHHHHHHHHHHHHHHhcChHHHHHhcCCccchHHHHHHHHHHHHHh---------cccHhHHHHHHHHHH-cCchhhHH
Confidence 34678888888888877 799999999999999999988643221 144556788888888 67777777
Q ss_pred hhhhhhhhhh
Q 022232 102 LRVSCMNQKL 111 (300)
Q Consensus 102 ~rVs~I~Qrv 111 (300)
.=|+..++..
T Consensus 120 ~Ivk~F~~lm 129 (210)
T KOG1662|consen 120 EIVKAFETLM 129 (210)
T ss_pred HHHHHHHHHH
Confidence 7777666666
No 42
>KOG4835 consensus DNA-binding protein C1D involved in regulation of double-strand break repair [Replication, recombination and repair]
Probab=20.38 E-value=6.3e+02 Score=22.71 Aligned_cols=83 Identities=24% Similarity=0.247 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhh
Q 022232 26 FVKALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVS 105 (300)
Q Consensus 26 F~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs 105 (300)
|.+.+.||+..=.++.++++==+..-++ +-|.-||-+-.||..+|-=+.+-+.-+.-+=...+.+ ...|..+-.++.
T Consensus 18 f~~~l~~l~~~le~~~s~~e~e~l~sl~--~EqAKld~~~~ya~~sl~~~~l~~kG~da~dh~V~~E-L~Rvk~y~~k~K 94 (144)
T KOG4835|consen 18 FLDNLEELKPPLEDMESISELEELRSLL--LEQAKLDLTLAYAINSLFWSFLKLKGVDASDHPVLQE-LERVKVYMAKIK 94 (144)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHH-HHHHHHHHHHHH
Confidence 9999999998888888887655444444 4778888888888888876666555554443343333 344444444444
Q ss_pred hhhhhh
Q 022232 106 CMNQKL 111 (300)
Q Consensus 106 ~I~Qrv 111 (300)
.|.-|+
T Consensus 95 qi~d~~ 100 (144)
T KOG4835|consen 95 QINDRV 100 (144)
T ss_pred HHHhhc
Confidence 444443
Done!