Query 022232
Match_columns 300
No_of_seqs 112 out of 126
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_F ABL interactor 2; actin 100.0 2.4E-42 8.2E-47 299.4 15.1 145 15-165 2-155 (159)
2 3p8c_D Wiskott-aldrich syndrom 79.6 2.4 8.4E-05 39.6 5.5 52 60-111 22-73 (279)
3 3b5n_D Protein transport prote 51.1 68 0.0023 23.3 7.3 58 62-124 5-62 (64)
4 3b5n_C Protein transport prote 48.8 44 0.0015 25.0 6.0 48 70-117 15-62 (70)
5 1l4a_C S-SNAP25 fusion protein 41.3 50 0.0017 25.5 5.4 44 69-112 29-72 (83)
6 2d4y_A HAP1, flagellar HOOK-as 40.8 56 0.0019 31.1 6.9 58 55-113 64-121 (463)
7 1n7s_D SNAP-25A; neuronal snar 36.4 1.1E+02 0.0039 21.6 6.8 50 62-111 5-54 (66)
8 1sfc_D Protein (SNAP-25B), pro 31.6 1.7E+02 0.0057 22.1 7.5 53 59-111 21-73 (87)
9 1fs1_B SKP1, cyclin A/CDK2-ass 28.5 1.1E+02 0.0038 24.6 5.8 38 15-52 16-61 (141)
10 1gl2_D Syntaxin 8, vesicle tra 28.5 1.3E+02 0.0044 21.3 5.5 43 69-111 11-53 (65)
11 1l4a_D S-SNAP25 fusion protein 27.8 1.7E+02 0.0059 22.2 6.5 51 61-111 24-74 (87)
12 1m1j_C Fibrinogen gamma chain; 27.0 2.8E+02 0.0097 26.8 9.3 139 25-168 42-198 (409)
13 1nhl_A Synaptosomal-associated 26.8 1.3E+02 0.0045 20.9 5.2 43 69-111 2-44 (54)
14 4g1a_A AQ-C16C19 peptide; heli 26.6 18 0.00062 23.6 0.6 23 97-119 2-24 (32)
15 3hd7_B Syntaxin-1A; membrane p 25.6 2.4E+02 0.0082 22.0 7.8 54 58-111 10-65 (109)
16 2yo3_A General control protein 25.0 1.2E+02 0.0042 28.2 6.0 41 60-111 206-246 (268)
17 1orj_A Flagellar protein FLIS; 23.7 2.2E+02 0.0077 23.1 6.8 79 24-111 24-107 (130)
18 3ghg_A Fibrinogen alpha chain; 23.1 1.8E+02 0.0062 29.7 7.3 92 17-115 53-162 (562)
19 1t3u_A Conserved hypothetical 23.0 55 0.0019 25.1 2.9 66 38-111 26-91 (104)
20 2w6b_A RHO guanine nucleotide 22.6 59 0.002 23.9 2.7 44 70-134 6-49 (56)
No 1
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=100.00 E-value=2.4e-42 Score=299.38 Aligned_cols=145 Identities=23% Similarity=0.350 Sum_probs=133.9
Q ss_pred hhhHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 022232 15 FDEVSMERSKSFVKALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQT 94 (300)
Q Consensus 15 ~~E~~m~~~~~F~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~ 94 (300)
++|++|---.-++.++++|.+...+|++||||||+||++++||++||||||+||+|||||||||||+||++|++|||+|+
T Consensus 2 ~~~l~~l~~~eiP~~r~~L~~s~~nL~~vAdYCE~nY~qs~dK~~aleeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~ 81 (159)
T 3p8c_F 2 MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSADKQRALEETKAYTTQSLASVAYLINTLANNVLQMLDIQA 81 (159)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788766667778888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhhhhhhhhhhhhhhhhhhhhHHhhhh-----ccCCCcceeecCCCCCCcccccc----CcCccccccccC
Q 022232 95 SDVSTMELRVSCMNQKLLTCQTYSNKEGLRQQQLLA-----FIPRHHKHYILPNSVNKKVHFSP----RVPTDARQNHFS 165 (300)
Q Consensus 95 ~evs~mE~rVs~I~Qrv~tc~~~ihkEkvarreig~-----~~pr~hKryI~P~~~~k~~~~~~----~~~~d~~~~~f~ 165 (300)
++|+.||++|++|+|+| +||+||++|||||. +.+|+|| ||+|++.++|+.|.+ +...|+.+|.++
T Consensus 82 ~~l~~mes~v~~l~Q~v-----~ih~EKvaRreIg~lT~~k~~~r~~k-ii~p~~~e~~~~Y~R~pI~y~~LD~iGhGvk 155 (159)
T 3p8c_F 82 SQLRRMESSINHISQTV-----DIHKEKVARREIGILTTNKNTSRTHK-IIAPANLERPVRYIRKPIDYTILDDIGHGVK 155 (159)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTCEECCCCCCCS-EECCSSCCCCCCCCCCCCCTTTTTTTTTCCC
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhccccccCCcCc-ccCCCCCCCCCCCccCCCchHhhcCCCcCcc
Confidence 99999999999999999 99999999999996 4788998 999999999999865 678899999875
No 2
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=79.62 E-value=2.4 Score=39.56 Aligned_cols=52 Identities=13% Similarity=0.326 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 60 VLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 60 aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
+.+++..-+.-+|++++-|||.|+..=.+++..=..++..+-.|++.|.+||
T Consensus 22 i~~eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI 73 (279)
T 3p8c_D 22 IKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERV 73 (279)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888999999999999999999999998999999999999999998
No 3
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=51.12 E-value=68 Score=23.34 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhhhhhhhhhhh
Q 022232 62 DNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLTCQTYSNKEGLR 124 (300)
Q Consensus 62 EeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~tc~~~ihkEkva 124 (300)
|.-.+=-...|..++--+..+|..+..=||.|...|..++.++..+.-+| .+....+.
T Consensus 5 E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri-----~~~~~Rl~ 62 (64)
T 3b5n_D 5 ELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINL-----HMNTNRLA 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhh
Confidence 33344445678888899999999999999999999999999999988888 55554443
No 4
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=48.84 E-value=44 Score=24.97 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhhhh
Q 022232 70 RALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLTCQTY 117 (300)
Q Consensus 70 QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~tc~~~ 117 (300)
+-....|+....+|.+-+.+|+.|..+|..+|..+..|.+-+..-+..
T Consensus 15 rr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~ 62 (70)
T 3b5n_C 15 RNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEK 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999999999999999888444433
No 5
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=41.35 E-value=50 Score=25.48 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhh
Q 022232 69 VRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLL 112 (300)
Q Consensus 69 ~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~ 112 (300)
++-.+.+|+....++.+-+..|+.|..+|..+|..+..|.+-+.
T Consensus 29 Trr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~ 72 (83)
T 1l4a_C 29 TRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMK 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567789999999999999999999999999999999998873
No 6
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=40.75 E-value=56 Score=31.13 Aligned_cols=58 Identities=5% Similarity=0.148 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhh
Q 022232 55 EQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLT 113 (300)
Q Consensus 55 ~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~t 113 (300)
..++.|++.++.++ +.+=++..+|..+-..+..-|..++.+|..+-.+|..|++.|..
T Consensus 64 ~~R~~vl~~a~~La-~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~ 121 (463)
T 2d4y_A 64 AARQALIGKAEGLV-NQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISR 121 (463)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999887 78889999999999999999999999999999999999999854
No 7
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=36.42 E-value=1.1e+02 Score=21.62 Aligned_cols=50 Identities=10% Similarity=0.249 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 62 DNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 62 EeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
|.=.+=-...|.+.+--+..+|..+-+=|+.|...+..++..|....-+|
T Consensus 5 e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l 54 (66)
T 1n7s_D 5 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRI 54 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344456788999999999999999999999999999999998888888
No 8
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.57 E-value=1.7e+02 Score=22.10 Aligned_cols=53 Identities=9% Similarity=0.203 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 59 MVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 59 ~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
.+++.=.+=-...|..++--|..+|..+..=|+.|...|..++..|....-+|
T Consensus 21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl 73 (87)
T 1sfc_D 21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRI 73 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34555556667889999999999999999999999999999999998888888
No 9
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=28.54 E-value=1.1e+02 Score=24.59 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=25.8
Q ss_pred hhhHhhhhhhhHHHHHHHH-------HhhhHH-HHHHHHHHHHhcC
Q 022232 15 FDEVSMERSKSFVKALQEL-------KNLRPQ-LYSAAEYCEKSYL 52 (300)
Q Consensus 15 ~~E~~m~~~~~F~~aL~EL-------k~lR~q-L~~aAdYCE~nYl 52 (300)
+++.....|..|-..+.+. ++..+. |.+|.+||+...-
T Consensus 16 v~~~vA~~S~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~ 61 (141)
T 1fs1_B 16 VDVEIAKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKD 61 (141)
T ss_dssp EEGGGGGTCHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTT
T ss_pred ecHHHHHHhHHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhcc
Confidence 3444456677777777763 344444 9999999998763
No 10
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.46 E-value=1.3e+02 Score=21.26 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 69 VRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 69 ~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
...|.+.|-.+..+|..+.+=|+.|..-+..++..|....-++
T Consensus 11 Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l 53 (65)
T 1gl2_D 11 LDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKL 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999998888887
No 11
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=27.77 E-value=1.7e+02 Score=22.20 Aligned_cols=51 Identities=8% Similarity=0.239 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 61 LDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 61 LEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
+|.=.+=-...|..++..|..+|..+..=|+.|...|..++..|..+.-+|
T Consensus 24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl 74 (87)
T 1l4a_D 24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRI 74 (87)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566788899999999999999999999999999999998888888
No 12
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.02 E-value=2.8e+02 Score=26.83 Aligned_cols=139 Identities=12% Similarity=0.208 Sum_probs=68.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHhcCCc-----------hhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 022232 25 SFVKALQELKNLRPQLYSAAEYCEKSYLHS-----------EQK-QMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQ 92 (300)
Q Consensus 25 ~F~~aL~ELk~lR~qL~~aAdYCE~nYl~s-----------~dK-q~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~ 92 (300)
.+.++|+||-++-...+...-.|...|-.. .+| ++.+|+...|- ..+.+.-..|..|. .+|+.
T Consensus 42 ~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e-~~~~~~~~~i~~l~----~~~~~ 116 (409)
T 1m1j_C 42 EIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYE-NTILAHENTIQQLT----DMHIM 116 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHH-HHhcchHHHHHHHH----HHHHh
Confidence 456777888888888888888899998763 122 25667766662 22333333333332 33333
Q ss_pred hhhhhhhchhhhhhhhhhhh-hhhhhhh-hhhhhH--HhhhhccCC-CcceeecCCCCCCccccccCcCcc-ccccccCC
Q 022232 93 QTSDVSTMELRVSCMNQKLL-TCQTYSN-KEGLRQ--QQLLAFIPR-HHKHYILPNSVNKKVHFSPRVPTD-ARQNHFSS 166 (300)
Q Consensus 93 Q~~evs~mE~rVs~I~Qrv~-tc~~~ih-kEkvar--reig~~~pr-~hKryI~P~~~~k~~~~~~~~~~d-~~~~~f~~ 166 (300)
+...|..++.+|..|..++. .|..-.. .....+ .+|...-.+ .--..|-|.+...|+..+|.+.+| ..|--||.
T Consensus 117 ~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~sC~~i~~~g~~~SGvY~I~p~~~~~pf~V~CDm~t~GGGWtviqr 196 (409)
T 1m1j_C 117 NSNKITQLKQKIAQLESHCQEPCKDTAEIQETTGRDCQDIANKGARKSGLYFIKPQKAKQSFLVYCEIDTYGNGWTVLQR 196 (409)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSCCEESCCEEEEEESSHHHHHTTTCCSCEEEEECCTTCSSCEEEEEEECTTSCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCHHHHHhcCCCCCeeEEEecCCCCCcEEEEEeeccCCCceEEEEE
Confidence 34444444444444433321 1100000 000000 000000001 111256676657788888988876 56766665
Q ss_pred CC
Q 022232 167 RL 168 (300)
Q Consensus 167 r~ 168 (300)
|.
T Consensus 197 R~ 198 (409)
T 1m1j_C 197 RL 198 (409)
T ss_dssp ES
T ss_pred cc
Confidence 54
No 13
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=26.79 E-value=1.3e+02 Score=20.89 Aligned_cols=43 Identities=14% Similarity=0.262 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 69 VRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 69 ~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
++....+++....++.+.+..|..|-.++..++..+..|.+-+
T Consensus 2 t~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l 44 (54)
T 1nhl_A 2 TRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHH
Confidence 3455667777777888888999999999999999998888877
No 14
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=26.62 E-value=18 Score=23.57 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=19.1
Q ss_pred hhhchhhhhhhhhhhhhhhhhhh
Q 022232 97 VSTMELRVSCMNQKLLTCQTYSN 119 (300)
Q Consensus 97 vs~mE~rVs~I~Qrv~tc~~~ih 119 (300)
+..+|.+|..|.|.+-.|++-|-
T Consensus 2 iaaleqkiaaleqkcaaceqkia 24 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIA 24 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999988664
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=25.62 E-value=2.4e+02 Score=22.02 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=44.6
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 58 QMVLDNL--KDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 58 q~aLEeT--K~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
+.+|.+. .+-.++-|.+.+..|+.+-..|-.|+.+|-..+...|..|......|
T Consensus 10 ~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v 65 (109)
T 3hd7_B 10 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 65 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344443 34567888899999999999999999999999999999998877777
No 16
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=25.02 E-value=1.2e+02 Score=28.21 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 60 VLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 60 aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
++.+.+.|+-.-+.++-.+|+.|-.+ ++++|.+|+.|-|.+
T Consensus 206 s~~~an~yTd~k~~~l~n~I~~V~n~-----------~~q~~~~~~~~~~~~ 246 (268)
T 2yo3_A 206 SVEEANTYTDQKMGEMNSKIKGVENK-----------MKQIEDKIEEILSKI 246 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 67788999888888887777776554 445556666666666
No 17
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=23.74 E-value=2.2e+02 Score=23.12 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhcCCchhH---HHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhh
Q 022232 24 KSFVKALQELKNLRPQLYSAAEYCEKSYLHSEQK---QMVLDNLKDYAVRALVNAVDHL--GTVAYKLTDLLEQQTSDVS 98 (300)
Q Consensus 24 ~~F~~aL~ELk~lR~qL~~aAdYCE~nYl~s~dK---q~aLEeTK~Ya~QALaSVayhI--gtvA~kll~LLd~Q~~evs 98 (300)
|+|+.+++.|...+..+.+ .+|+ +.| -..+.-+.+-. ..|-+..|.= |.||.+|..|-+--..++.
T Consensus 24 mLydgai~~l~~A~~ai~~------~d~~--~~k~~~~~~i~KA~~Ii-~eL~~sLd~e~GgeiA~nL~~LY~y~~~~LA 94 (130)
T 1orj_A 24 LLYDKAIECLERAIEIYDQ------VNEL--EKRKEFVENIDRVYDII-SALKSFLDHEKGKEIAKNLDTIYTIILNTLV 94 (130)
T ss_dssp HHHHHHHHHHHHHHHTGGG------TTSH--HHHHHHHHHHHHHHHHH-HHHHHTCCTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc------CCHH--HHHHHHHHHHHHHHHHH-HHHHHhcCCccCcHHHHHHHHHHHHHHHHHh
Confidence 6999999999988877652 3332 334 33344444444 4466666665 7999999999999888886
Q ss_pred hchhhhhhhhhhh
Q 022232 99 TMELRVSCMNQKL 111 (300)
Q Consensus 99 ~mE~rVs~I~Qrv 111 (300)
.+...+..|...+
T Consensus 95 n~~~d~~~l~ev~ 107 (130)
T 1orj_A 95 KVDKTKEELQKIL 107 (130)
T ss_dssp CTTCCHHHHHHHH
T ss_pred cccCCHHHHHHHH
Confidence 6666666666655
No 18
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.15 E-value=1.8e+02 Score=29.67 Aligned_cols=92 Identities=17% Similarity=0.271 Sum_probs=49.7
Q ss_pred hHhhhhhhhHHHHHHHHHhhhHHHHH----HHHHHHH--hcCCchhHHHH------------HHHHHHHHHHHHHHHHHh
Q 022232 17 EVSMERSKSFVKALQELKNLRPQLYS----AAEYCEK--SYLHSEQKQMV------------LDNLKDYAVRALVNAVDH 78 (300)
Q Consensus 17 E~~m~~~~~F~~aL~ELk~lR~qL~~----aAdYCE~--nYl~s~dKq~a------------LEeTK~Ya~QALaSVayh 78 (300)
.+-.++..-|.+.++||++.-.+|.+ +-.|.+. .||+..+++.. |+.--.|...=|-+++-+
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsn 132 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQH 132 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777777777765544321 2233332 34444333321 223333444444444433
Q ss_pred hhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhh
Q 022232 79 LGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLTCQ 115 (300)
Q Consensus 79 IgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~tc~ 115 (300)
| ..|-..|+.|..+|..+|..|. ..+++|.
T Consensus 133 I----rvLQsnLedq~~kIQRLEvDId---iqirsCK 162 (562)
T 3ghg_A 133 I----QLLQKNVRAQLVDMKRLEVDID---IKIRSCR 162 (562)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHH---HHHHHGG
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHH---HHHHhcc
Confidence 3 4455667778888888887764 4566775
No 19
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=22.99 E-value=55 Score=25.10 Aligned_cols=66 Identities=23% Similarity=0.212 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhh
Q 022232 38 PQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKL 111 (300)
Q Consensus 38 ~qL~~aAdYCE~nYl~s~dKq~aLEeTK~Ya~QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv 111 (300)
..|..||.|++...-.=.++-.+++..+ .++=|-.|+||.+ +.+-+.....+..++.+|..|.+++
T Consensus 26 e~l~~aA~~vd~~~~~i~~~~~~~~~~r-~~vmaALnladel-------~~~~~~~~~~~~~~~~~i~~L~~~l 91 (104)
T 1t3u_A 26 ANLESAARYLDGKMREIRSSGKVIGADR-VAVMAALNITHDL-------LHRKERLDQESSSTRERVRELLDRV 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSCSHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478888888765533222222333333 4444555555443 3333333345777888888888877
No 20
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.60 E-value=59 Score=23.91 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhhhhhhhhhhhHHhhhhccCC
Q 022232 70 RALVNAVDHLGTVAYKLTDLLEQQTSDVSTMELRVSCMNQKLLTCQTYSNKEGLRQQQLLAFIPR 134 (300)
Q Consensus 70 QALaSVayhIgtvA~kll~LLd~Q~~evs~mE~rVs~I~Qrv~tc~~~ihkEkvarreig~~~pr 134 (300)
++||.+||.|.. +|.++-.....+++ .++.|..||+.+-..++|
T Consensus 6 KSlVDtVYaLkD--------------qV~eL~qe~k~m~k-------~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 6 KSLVDTVYALKD--------------EVQELRQDNKKMKK-------SLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 688889887642 22222223333444 447888888877654443
Done!