BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022233
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/257 (46%), Positives = 172/257 (66%), Gaps = 12/257 (4%)
Query: 39 NKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNH 98
+FK + W P D FL A+S+ A++ + A AE + +P + +V + S GL+
Sbjct: 42 KRFKLFRYWTQPAQRD-FLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDK 100
Query: 99 VDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEG 156
VD+ +C +G+ V N +V ++DVADLA+GL++ +LR I D++V++ W G
Sbjct: 101 VDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAW------KFG 154
Query: 157 DCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCE 216
D + +K GKRVGI+GLG IG VA+R +AF C ISY SR+KKP+ +Y +Y +V E
Sbjct: 155 D---FKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVE 211
Query: 217 LAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276
LA+N DIL++ C LT ET H+IN++V+ ALG +GV+INIGRGP +DE ELV LV+G +
Sbjct: 212 LASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLG 271
Query: 277 GAGLDVFENEPDVPKEL 293
GAGLDVFE EP+VP++L
Sbjct: 272 GAGLDVFEREPEVPEKL 288
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 152/280 (54%), Gaps = 18/280 (6%)
Query: 17 PRVLLFKPPPDFHLFGDECFSSNKF-KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPV 75
P +LL +P F DE + + +A + P L+ S+ A+ + GGA +
Sbjct: 31 PDLLLVEPXXPF--VXDELQRNYSVHRLYQAADRPA-----LEAALPSIRAVATGGGAGL 83
Query: 76 TAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
+ E +P++ ++ G + VD+A RRR I V V ++DVADL + L + +LR
Sbjct: 84 SNEWXEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLR 143
Query: 136 NISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC 193
+ DR V++ W A G+ LG K GKR+G++GLG IG +A R +AFG
Sbjct: 144 RVGDGDRLVREGRW------AAGEQLPLGHSPK--GKRIGVLGLGQIGRALASRAEAFGX 195
Query: 194 SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVI 253
S+ Y +R+ V + + + +LA + D+L +C +A T ++++ +L ALG EG+V+
Sbjct: 196 SVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVV 255
Query: 254 NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
N+ RG ++DE L+ L G I GAGLDVF NEP + E
Sbjct: 256 NVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEF 295
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 142/251 (56%), Gaps = 18/251 (7%)
Query: 52 PLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
P + LK + I+ S +T E L ++++ SAG +++D+ E +RGI V
Sbjct: 31 PSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYV 90
Query: 112 ANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYS-LGIGSK---- 166
+ SE VA+ VGL+I+L+R I +D+F+++ E + ++ + G K
Sbjct: 91 TKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRR-------GEWESHAKIWTGFKRIES 143
Query: 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDI 223
L GK+VGI+G+G+IG +A+RL FG + Y SR +K +V Y ++ EL DI
Sbjct: 144 LYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDI 203
Query: 224 LIICCGLTAETHHMINKQVLSALGKEG-VVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282
+I+ LT +T+H+IN++ + L EG ++NIGRG ++DE+ + + QG++KG DV
Sbjct: 204 VILALPLTRDTYHIINEERVKKL--EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDV 261
Query: 283 FENEPDVPKEL 293
FE EP EL
Sbjct: 262 FEKEPVREHEL 272
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 137/251 (54%), Gaps = 9/251 (3%)
Query: 48 ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
E +P + LK + V+A+++ + E P +R+V + G +++DI E +R
Sbjct: 31 EKEIPREILLK-KVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGS 165
GI V N +V ++ ADLA LL+ R++ DRFV+ +W + A + +G
Sbjct: 90 GIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWF---LGY 146
Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCD 222
+ GK +GI+GLG IG +AKR F I Y SRT+K V + + +L D
Sbjct: 147 DVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESD 206
Query: 223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282
+++ LT ET+H+IN++ L + K ++INI RG ++D LV+ L +G I GAGLDV
Sbjct: 207 FVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV 266
Query: 283 FENEPDVPKEL 293
FE EP +EL
Sbjct: 267 FEEEPYYNEEL 277
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 136/251 (54%), Gaps = 9/251 (3%)
Query: 48 ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
E +P + LK + V+A+++ + E P +R+V + G +++DI E +R
Sbjct: 31 EKEIPREILLK-KVKEVDALVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGS 165
GI V N +V ++ ADLA LL+ R++ DRFV+ +W + A + +G
Sbjct: 90 GIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWF---LGY 146
Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCD 222
+ GK +GI+GLG IG +AKR F I Y SRT+K V + + +L D
Sbjct: 147 DVYGKTIGIIGLGRIGQAIAKRAKGFNXRILYYSRTRKEEVERELNAEFKPLEDLLRESD 206
Query: 223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282
+++ LT ET+H+IN++ L K ++INI RG ++D LV+ L +G I GAGLDV
Sbjct: 207 FVVLAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV 266
Query: 283 FENEPDVPKEL 293
FE EP +EL
Sbjct: 267 FEEEPYYNEEL 277
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 133/245 (54%), Gaps = 14/245 (5%)
Query: 52 PLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
P + L + VEAI+ VT + P ++++ GL+++D+ + +GI V
Sbjct: 33 PDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEV 92
Query: 112 ANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR 171
NA S VA+LAVGL+ + R I+ +DR +++ + ++ A +G +L GK
Sbjct: 93 VNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEA--------MGIELEGKT 144
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSI----SYNSRTKKPSVSYPFYSNVCELAANCDILIIC 227
+GI+G G IG VAK +A G +I Y + + V+ F ++ L D++ I
Sbjct: 145 IGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFV-DLETLLKESDVVTIH 203
Query: 228 CGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
L T+H+IN++ L + K ++IN RGP++D LV+ L +G I GAGLDVFE EP
Sbjct: 204 VPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEP 263
Query: 288 DVPKE 292
+PK+
Sbjct: 264 -LPKD 267
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 13/208 (6%)
Query: 86 VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK 145
++++ T S G++H+ + E ++RGI V +V ++ A+LAV LL+ R + + VK
Sbjct: 77 LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 136
Query: 146 Q--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTK 202
W + + G G L VGI+GLG IG +A+RL FG Y R
Sbjct: 137 NGGW-----TSWKPLWLCGYG--LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP 189
Query: 203 KPSVSYPF---YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP 259
+P + F + + ELAA D +++ C LT T + NK + + V INI RG
Sbjct: 190 RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGD 249
Query: 260 IIDEQELVRCLVQGEIKGAGLDVFENEP 287
++++ +L + L G+I AGLDV EP
Sbjct: 250 VVNQDDLYQALASGKIAAAGLDVTSPEP 277
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 117/237 (49%), Gaps = 9/237 (3%)
Query: 57 LKTHAQSVEAILSSGGAPVTAETLR-LMPAVRLVMTTSAGLNHVDIAECRRRGITVANAG 115
+ + A E + + +TAE +R L P ++ + T S G +H+D A R GI V +
Sbjct: 65 IASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTP 124
Query: 116 NVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIV 175
+V S+ A++A L+++ R +DR V+ P G LG G L G+R+GI
Sbjct: 125 DVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWP---GWGPTQLLGXG--LTGRRLGIF 179
Query: 176 GLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---SYPFYSNVCELAANCDILIICCGLTA 232
G G IG +A R FG +I Y++RT+ ++ + L DI +I
Sbjct: 180 GXGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRP 239
Query: 233 ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV 289
E ++ ++ + + VVINI RG +I++ L+ L + AGLDVF NEP +
Sbjct: 240 ELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAI 296
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 13/208 (6%)
Query: 86 VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK 145
++++ T S G++H+ + E ++RGI V +V ++ A+LAV LL+ R + + VK
Sbjct: 75 LKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 134
Query: 146 Q--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTK 202
W + + G G L VGI+GLG IG +A+RL FG Y R
Sbjct: 135 NGGW-----TSWKPLWLCGYG--LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP 187
Query: 203 KPSVSYPF---YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP 259
+P + F + + ELAA D +++ C LT T + NK + V INI RG
Sbjct: 188 RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGD 247
Query: 260 IIDEQELVRCLVQGEIKGAGLDVFENEP 287
++++ +L + L G+I AGLDV EP
Sbjct: 248 VVNQDDLYQALASGKIAAAGLDVTSPEP 275
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 12/245 (4%)
Query: 51 LPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA-VRLVMTTSAGLNHVDIAECRRRGI 109
+ +D+ ++T A+SV+A+L + E + +P ++ + T S G +H+D+ C+ RGI
Sbjct: 33 ITIDEMIET-AKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGI 91
Query: 110 TVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGG 169
V NA + + A++A+ LL+ R ++ + R R + L +G KL
Sbjct: 92 KVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMI----RTRSWPGWEPLEL-VGEKLDN 146
Query: 170 KRVGIVGLGSIGSLVAKRLDAFGCSISY-----NSRTKKPSVSYPFYSNVCELAANCDIL 224
K +GI G GSIG +AKR F I Y S + + S F+ ++ L +
Sbjct: 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFF 206
Query: 225 IICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE 284
+ T ET + NK + +L + +V+N RG ++D + +V L G + AG DVF
Sbjct: 207 SLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFA 266
Query: 285 NEPDV 289
EP++
Sbjct: 267 GEPNI 271
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 127/271 (46%), Gaps = 16/271 (5%)
Query: 19 VLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAE 78
VL P + F E K S +P ++ K SV +T E
Sbjct: 3 VLFTSVPQEDVPFYQEALKDLSLKIYTTDVSKVPENELKKAELISVFVY-----DKLTEE 57
Query: 79 TLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNIS 138
L P ++L+ T S G +H+D+ C+++GI V + E VA+ ++ L++ +
Sbjct: 58 LLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLK 117
Query: 139 ASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN 198
+ VK+ L Q +E + +L +G++G G IGS VA AFG +
Sbjct: 118 RIEDRVKK-LNFSQDSEI------LARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCY 170
Query: 199 SRTKKPSVSYP--FYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV-VINI 255
K+ + Y+++ EL D++ + T ETHH IN++ +S L K+GV +IN
Sbjct: 171 DVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERIS-LXKDGVYLINT 229
Query: 256 GRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
RG ++D L R +G+ G GLDVFE+E
Sbjct: 230 ARGKVVDTDALYRAYQRGKFSGLGLDVFEDE 260
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 113/217 (52%), Gaps = 5/217 (2%)
Query: 75 VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
+T E L A+R+++ +G +++DI GI V N E+ AD + +++L
Sbjct: 78 LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 135 RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
R + + +++ R + + + G +++ G+ +GI+GLG +G VA R AFG +
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASG-AARIRGETLGIIGLGRVGQAVALRAKAFGFN 196
Query: 195 I----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
+ Y S + ++ S + +L + D + + CGL HH+IN + + +
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
++N RG ++DE+ L + L +G I+GA LDV E+EP
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 293
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 17/232 (7%)
Query: 62 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSED 121
Q E ++ VTA+ + +++V G+++VD+ R+GI V N N S
Sbjct: 66 QDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLS 125
Query: 122 VADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGS 179
A+L G+++ L R I + +K +W R + +G++L GK +GI+GLG
Sbjct: 126 AAELTCGMIMCLARQIPQATASMKDGKWERKK----------FMGTELNGKTLGILGLGR 175
Query: 180 IGSLVAKRLDAFGC-SISYNSRTKKPSVSYPFYSN---VCELAANCDILIICCGLTAETH 235
IG VA R+ +FG +I Y+ P VS F + E+ CD + + L T
Sbjct: 176 IGREVATRMQSFGMKTIGYDP-IISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTT 234
Query: 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
++N + K V+N RG I+DE L+R L G+ GA LDVF EP
Sbjct: 235 GLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP 286
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 113/217 (52%), Gaps = 5/217 (2%)
Query: 75 VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
+T E L A+R+++ +G +++DI GI V N E+ AD + +++L
Sbjct: 78 LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 135 RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
R + + +++ R + + + G +++ G+ +GI+GLG +G VA R AFG +
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASG-AARIRGETLGIIGLGRVGQAVALRAKAFGFN 196
Query: 195 I----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
+ Y S + ++ S + +L + D + + CGL HH+IN + + +
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
++N RG ++DE+ L + L +G I+GA LDV E+EP
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 293
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 13/241 (5%)
Query: 54 DQFLKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
D L+ H E I+S P +TAE + P ++L +T G +HVD+ ITV
Sbjct: 81 DSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITV 140
Query: 112 ANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR 171
A S VA+ V +++ L+RN S W R DC + + G
Sbjct: 141 AEVTYCNSNSVAEHVVMMVLGLVRNYIPS----HDWARNGGWNIADC--VARSYDVEGMH 194
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILII 226
VG V G IG V + L F + Y R + P ++ +++ ++ CD++ +
Sbjct: 195 VGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTL 254
Query: 227 CCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
C L ET HMIN + L + ++N RG + D +VR L G + G DV+ +
Sbjct: 255 NCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQ 314
Query: 287 P 287
P
Sbjct: 315 P 315
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 13/241 (5%)
Query: 54 DQFLKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
D L+ H E I+S P +TAE + P ++L +T G +HVD+ ITV
Sbjct: 80 DSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITV 139
Query: 112 ANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR 171
A S VA+ V +++ L+RN S W R DC + + G
Sbjct: 140 AEVTYCNSNSVAEHVVMMVLGLVRNYIPS----HDWARNGGWNIADC--VARSYDVEGMH 193
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILII 226
VG V G IG V + L F + Y R + P ++ +++ ++ CD++ +
Sbjct: 194 VGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTL 253
Query: 227 CCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
C L ET HMIN + L + ++N RG + D +VR L G + G DV+ +
Sbjct: 254 NCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQ 313
Query: 287 P 287
P
Sbjct: 314 P 314
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 113/217 (52%), Gaps = 5/217 (2%)
Query: 75 VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
+T E L A+R+++ +G +++DI GI V N E+ AD + +++L
Sbjct: 75 LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 134
Query: 135 RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
R + + +++ R + + + G +++ G+ +GI+GLG +G VA R AFG +
Sbjct: 135 RRATWLHQALREGTRVQSVEQIREVASG-AARIRGETLGIIGLGRVGQAVALRAKAFGFN 193
Query: 195 I----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
+ Y S + ++ S + +L + D + + CGL HH+IN + + +
Sbjct: 194 VLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 253
Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
++N RG ++DE+ L + L +G I+GA LDV E+EP
Sbjct: 254 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 290
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 125/246 (50%), Gaps = 20/246 (8%)
Query: 57 LKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA 114
L+ H + ++S+ P VTAE ++ ++L++T G +H+D+ G+TVA
Sbjct: 62 LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEV 121
Query: 115 GNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSK---LGGKR 171
VA+ + ++ L+RN FV + Q +G+ GI + L GK
Sbjct: 122 TGSNVVSVAEDELMRILILMRN------FVPGY---NQVVKGEWNVAGIAYRAYDLEGKT 172
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTK-----KPSVSYPFYSNVCELAANCDILII 226
+G VG G IG L+ +RL FGC++ Y+ R + + F ++ E+ CD+++I
Sbjct: 173 IGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVI 232
Query: 227 CCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
LT +T M NK+++ L K +++N RG I++ Q +V + G I G DV++ +
Sbjct: 233 NMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQ 292
Query: 287 PDVPKE 292
P PK+
Sbjct: 293 P-APKD 297
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 133/259 (51%), Gaps = 25/259 (9%)
Query: 48 ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
+S L ++ L+ + +A+++ V A+ L+ P +R++ G ++ D+ C R
Sbjct: 31 DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ-----WLRPRQAAEGDCYSLG 162
G+ + ++ + A+LA+GL + L R++ A+D FV+ W +PR
Sbjct: 90 GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGW-QPR----------F 138
Query: 163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT---KKPSVSYPFYSNVC-ELA 218
G+ L VG +G+G+IG +A RL +G ++ Y++R + C EL
Sbjct: 139 YGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVACSELF 198
Query: 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278
A+ D +++ L A+T H++N ++L+ + +++N RG ++DE ++ L +G++ G
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 279 GLDVFENE----PDVPKEL 293
DVFE E D P+++
Sbjct: 259 AADVFEMEDWARADRPQQI 277
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 133/259 (51%), Gaps = 25/259 (9%)
Query: 48 ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
+S L ++ L+ + +A+++ V A+ L+ P +R++ G ++ D+ C R
Sbjct: 31 DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ-----WLRPRQAAEGDCYSLG 162
G+ + ++ + A+LA+GL + L R++ A+D FV+ W +PR
Sbjct: 90 GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGW-QPR----------F 138
Query: 163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT---KKPSVSYPFYSNVC-ELA 218
G+ L VG +G+G+IG +A RL +G ++ Y++R + C EL
Sbjct: 139 YGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVACSELF 198
Query: 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278
A+ D +++ L A+T H++N ++L+ + +++N RG ++DE ++ L +G++ G
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 279 GLDVFENE----PDVPKEL 293
DVFE E D P+++
Sbjct: 259 AADVFEMEDWARADRPQQI 277
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 125/246 (50%), Gaps = 20/246 (8%)
Query: 57 LKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA 114
L+ H + ++S+ P VTAE ++ ++L++T G +H+D+ G+TVA
Sbjct: 56 LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEV 115
Query: 115 GNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSK---LGGKR 171
VA+ + ++ L+RN FV + Q +G+ GI + L GK
Sbjct: 116 TGSNVVSVAEDELMRILILMRN------FVPGY---NQVVKGEWNVAGIAYRAYDLEGKT 166
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTK-----KPSVSYPFYSNVCELAANCDILII 226
+G VG G IG L+ +RL FGC++ Y+ R + + F ++ E+ CD+++I
Sbjct: 167 IGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVI 226
Query: 227 CCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
LT +T M NK+++ L K +++N RG I++ Q +V + G I G DV++ +
Sbjct: 227 NMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQ 286
Query: 287 PDVPKE 292
P PK+
Sbjct: 287 P-APKD 291
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 18/221 (8%)
Query: 75 VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
+ AE + ++++ S G++HVD+ R RGI V + V +E ADL + LL+ +
Sbjct: 55 IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 135 RNIS-----ASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD 189
R + A D K W P D L +G VG+G IG VAKR
Sbjct: 115 RRVVEGAAYARDGLWKAW-HPELLLGLDLQGLTLGL---------VGMGRIGQAVAKRAL 164
Query: 190 AFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKE 249
AFG + Y++RT KP + YPF S + EL D++ + LT ETH ++N++ L A+ +
Sbjct: 165 AFGMRVVYHARTPKP-LPYPFLS-LEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRG 222
Query: 250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP 290
+++N RG ++D + LV L +G + GAGLDV + EP P
Sbjct: 223 AILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLPP 262
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 17/229 (7%)
Query: 65 EAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVAD 124
+A+L V AE L P +++V GL++VD+ RG+ V NA A+
Sbjct: 46 DALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAE 105
Query: 125 LAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGS 182
A+ LL+ R I A+D +++ W R +S G+++ GK VG+VGLG IG
Sbjct: 106 HALALLLAASRQIPAADASLREHTWKR-------SSFS---GTEIFGKTVGVVGLGRIGQ 155
Query: 183 LVAKRLDAFGCSI----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI 238
LVA+R+ AFG + Y S + + S + +L A D + + T ET +I
Sbjct: 156 LVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLS-LDDLLARADFISVHLPKTPETAGLI 214
Query: 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
+K+ L+ +++N RG ++DE L + G ++ AGLDVF EP
Sbjct: 215 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP 263
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 5/217 (2%)
Query: 75 VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
+T E L A+R+++ +G +++DI GI V N E+ AD + +++L
Sbjct: 78 LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 135 RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
R + + +++ R + + + G +++ G+ +GI+GL +G VA R AFG +
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASG-AARIRGETLGIIGLERVGQAVALRAKAFGFN 196
Query: 195 I----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
+ Y S + ++ S + +L + D + + CGL HH+IN + + +
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
++N RG ++DE+ L + L +G I+GA LDV E+EP
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 293
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 17/229 (7%)
Query: 65 EAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVAD 124
+A+L V AE L P +++V GL++VD+ RG+ V NA A+
Sbjct: 45 DALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAE 104
Query: 125 LAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGS 182
A+ LL+ R I A+D +++ W R +S G+++ GK VG+VGLG IG
Sbjct: 105 HALALLLAASRQIPAADASLREHTWKR-------SSFS---GTEIFGKTVGVVGLGRIGQ 154
Query: 183 LVAKRLDAFGCSI----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI 238
LVA+R+ AFG + Y S + + S + +L A D + + T ET +I
Sbjct: 155 LVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLS-LDDLLARADFISVHLPKTPETAGLI 213
Query: 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
+K+ L+ +++N RG ++DE L + G ++ AGLDVF EP
Sbjct: 214 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP 262
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 132/259 (50%), Gaps = 25/259 (9%)
Query: 48 ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
+S L ++ L+ + +A+++ V A+ L+ P +R++ G ++ D+ C R
Sbjct: 31 DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ-----WLRPRQAAEGDCYSLG 162
G+ + ++ + A+LA+GL + L R++ A+D FV+ W +PR
Sbjct: 90 GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGW-QPR----------F 138
Query: 163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN---SRTKKPSVSYPFYSNVC-ELA 218
G+ L VG +G+G+IG +A RL +G ++ Y+ + + C EL
Sbjct: 139 YGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELF 198
Query: 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278
A+ D +++ L A+T H++N ++L+ + +++N RG ++DE ++ L +G++ G
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 279 GLDVFENE----PDVPKEL 293
DVFE E D P+++
Sbjct: 259 AADVFEMEDWARADRPQQI 277
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 132/259 (50%), Gaps = 25/259 (9%)
Query: 48 ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
+S L ++ L+ + +A+++ V A+ L+ P +R++ G ++ D+ C R
Sbjct: 31 DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ-----WLRPRQAAEGDCYSLG 162
G+ + ++ + A+LA+GL + L R++ A+D FV+ W +PR
Sbjct: 90 GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGW-QPR----------F 138
Query: 163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN---SRTKKPSVSYPFYSNVC-ELA 218
G+ L VG +G+G+IG +A RL +G ++ Y+ + + C EL
Sbjct: 139 YGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELF 198
Query: 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278
A+ D +++ L A+T H++N ++L+ + +++N RG ++DE ++ L +G++ G
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 279 GLDVFENE----PDVPKEL 293
DVFE E D P+++
Sbjct: 259 AADVFEMEDWARADRPQQI 277
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 12/225 (5%)
Query: 73 APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
A +T E + ++L +T G +HVD+ R +TVA S VA+ V +++
Sbjct: 102 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 161
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
L+RN S +W R DC S L VG V G IG V +RL F
Sbjct: 162 LVRNYLPS----HEWARKGGWNIADCVSHAY--DLEAMHVGTVAAGRIGLAVLRRLAPFD 215
Query: 193 CSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG 247
+ Y R + P ++ +++ ++ CD++ + C L ET HMIN + L
Sbjct: 216 VHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFK 275
Query: 248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
+ ++N RG + D + R L G + G DV+ +P PK+
Sbjct: 276 RGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP-APKD 319
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 12/225 (5%)
Query: 73 APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
A +T E + ++L +T G +HVD+ R +TVA S VA+ V +++
Sbjct: 101 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 160
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
L+RN S +W R DC S L VG V G IG V +RL F
Sbjct: 161 LVRNYLPS----HEWARKGGWNIADCVSHAY--DLEAMHVGTVAAGRIGLAVLRRLAPFD 214
Query: 193 CSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG 247
+ Y R + P ++ +++ ++ CD++ + C L ET HMIN + L
Sbjct: 215 VHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFK 274
Query: 248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
+ ++N RG + D + R L G + G DV+ +P PK+
Sbjct: 275 RGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP-APKD 318
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 12/225 (5%)
Query: 73 APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
A +T E + ++L +T G +HVD+ R +TVA S VA+ V +++
Sbjct: 102 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 161
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
L+RN S +W R DC S L VG V G IG V +RL F
Sbjct: 162 LVRNYLPS----HEWARKGGWNIADCVSHAY--DLEAMHVGTVAAGRIGLAVLRRLAPFD 215
Query: 193 CSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG 247
+ Y R + P ++ +++ ++ CD++ + C L ET HMIN + L
Sbjct: 216 VHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFK 275
Query: 248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
+ ++N RG + D + R L G + G DV+ +P PK+
Sbjct: 276 RGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP-APKD 319
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 24/232 (10%)
Query: 75 VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
V A+ L+ P +R++ G ++ D+ C RG+ + ++ + A+LA+GL + L
Sbjct: 58 VDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLG 117
Query: 135 RNISASDRFVKQ-----WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD 189
R++ A+D FV+ W +PR G+ L VG +G G+IG A RL
Sbjct: 118 RHLRAADAFVRSGQFRGW-QPR----------FYGTGLDNATVGFLGXGAIGLAXADRLQ 166
Query: 190 AFGCSISYNSRT---KKPSVSYPFYSNVC-ELAANCDILIICCGLTAETHHMINKQVLSA 245
+G ++ Y++ + C EL A+ D +++ L A+T H++N ++L+
Sbjct: 167 GWGATLQYHAAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLAL 226
Query: 246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE----PDVPKEL 293
+ +++N RG ++DE ++ L +G++ G DVFE E D P+++
Sbjct: 227 VRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQI 278
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 108/217 (49%), Gaps = 5/217 (2%)
Query: 75 VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
+T E L A+R+++ +G ++VDI GI V N + E+ AD + +++L
Sbjct: 59 LTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLY 118
Query: 135 RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
R + + +++ R + + + G +++ G+ +G++G G G VA R AFG S
Sbjct: 119 RRNTWLYQALREGTRVQSVEQIREVASG-AARIRGETLGLIGFGRTGQAVAVRAKAFGFS 177
Query: 195 I----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
+ Y + S+ + +L D + + C L HH+IN + + +
Sbjct: 178 VIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGA 237
Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
++N RG ++DE+ L + L +G I+GA LDV E+EP
Sbjct: 238 FLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEP 274
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 21/202 (10%)
Query: 93 SAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQ 152
S G N V++ R+RGI V NA + VA+L +G +I L+R I + R
Sbjct: 88 SVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRI---------FPRSVS 138
Query: 153 AAEGDCYSLGIGSK-LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFY 211
A G IGS+ + GK +GIVG G+IGS V ++ G ++ Y + K Y
Sbjct: 139 AHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ-----Y 193
Query: 212 SNVC------ELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQE 265
NV EL D++ + + T +I + L + K +IN RG +D +
Sbjct: 194 GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEA 253
Query: 266 LVRCLVQGEIKGAGLDVFENEP 287
L + L +G + GA +DVF EP
Sbjct: 254 LAKVLQEGHLAGAAIDVFPVEP 275
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 29/298 (9%)
Query: 17 PRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQS----VEAILS--- 69
PRVLL P HL D+ +S + KF + D F + + EAI+
Sbjct: 4 PRVLLLGDPAR-HL--DDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAV 60
Query: 70 ---SGGAPVTAETLRLMPA-VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADL 125
+ P A+ + +P+ +++ AG + +D+ RG+ AN+ +DL
Sbjct: 61 ENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDL 120
Query: 126 AVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR---VGIVGLGSIGS 182
A+ L++ + R S S+R R + L IG R +G VGLG+I
Sbjct: 121 ALYLILSVFRLASYSERAA----RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQK 176
Query: 183 LVAKR-LDAFGCSISY------NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETH 235
+A++ + G + Y ++ T+K ++ ++ ELA D + + TH
Sbjct: 177 EIARKAVHGLGMKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTH 235
Query: 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
H+I++ +A+ ++N RGP+I + L+ L G++ AGLDV E EP+V KEL
Sbjct: 236 HLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKEL 293
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 16/231 (6%)
Query: 74 PVTAETLRLMPA-VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
P A+ + +P+ +++ AG + +D+ RG+ AN+ +DLA+ L++
Sbjct: 68 PWNADIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR---VGIVGLGSIGSLVAKR-L 188
+ R S S+R R + L IG R +G VGLG+I +A++ +
Sbjct: 128 VFRLASYSERAA----RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAV 183
Query: 189 DAFGCSISY------NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
G + Y ++ T+K ++ ++ ELA D + + THH+I++
Sbjct: 184 HGLGMKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAF 242
Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
+A+ ++N RGP+I + L+ L G++ AGLDV E EP V KEL
Sbjct: 243 FAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKEL 293
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 16/231 (6%)
Query: 74 PVTAETLRLMPA-VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
P A+ + +P+ +++ AG + +D+ RG+ AN+ +DLA+ L++
Sbjct: 68 PWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR---VGIVGLGSIGSLVAKR-L 188
+ R S S+R R + L IG R +G VGLG+I +A++ +
Sbjct: 128 VFRLASYSERAA----RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAV 183
Query: 189 DAFGCSISY------NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
G + Y ++ T+K ++ ++ ELA D + + THH+I++
Sbjct: 184 HGLGMKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAF 242
Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
+A+ ++N RGP+I + L+ L G++ AGLDV E EP V KEL
Sbjct: 243 FAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKEL 293
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 21/210 (10%)
Query: 86 VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISAS---DR 142
++ V SAG++++ + + G+ VAN + ++ +++ + ++ ++R A+ R
Sbjct: 62 LKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQR 121
Query: 143 FVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK 202
+QW P S L G+++ I G G IG +A + A G + + T
Sbjct: 122 GARQWALPMTT-----------STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTG 170
Query: 203 KPSVSYPFYSNVCELAANC-----DILIICCGLTAETHHMINKQVLSALGKEGVVINIGR 257
P+ F+ V A + ++ LT THH+ + ++ ++ ++INIGR
Sbjct: 171 HPADH--FHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGR 228
Query: 258 GPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
GP +D L+ L ++ A LDV E EP
Sbjct: 229 GPAVDTTALMTALDHHQLSMAALDVTEPEP 258
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 10/239 (4%)
Query: 53 LDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA--VRLVMTTSAGLNHVDIAECRRRGIT 110
LD+ A+ + I S P A M A ++ + + G +++D+ ++ GI
Sbjct: 34 LDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIR 93
Query: 111 VANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGK 170
++N +A+ A+ + LLRN+ V+ L QA + + IG +LG +
Sbjct: 94 LSNVPAYSPAAIAEFALTDTLYLLRNMGK----VQAQL---QAGDYEKAGTFIGKELGQQ 146
Query: 171 RVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPSVSYPFYSNVCELAANCDILIICCG 229
VG++G G IG + K FG I+Y+ K Y ++ +L D++ +
Sbjct: 147 TVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVP 206
Query: 230 LTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288
+ H+IN+ + + +VIN R +ID Q ++ L G++ G G+D +E E +
Sbjct: 207 GIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETE 265
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 117/259 (45%), Gaps = 24/259 (9%)
Query: 43 FLKAWESPLP------LDQFLKTH----AQSVEAILSSGGAPVTAETLRLMP--AVRLVM 90
FLK WE D+ L A+ + ++ AETL+ + + +
Sbjct: 16 FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 75
Query: 91 TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASD-RFVKQWLR 149
+ G++++D+A+ + G + N +A+ A +LR A D + + LR
Sbjct: 76 LRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR 135
Query: 150 PRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYP 209
++ IG ++ + VG+VG G IG + + ++ FG + + P +
Sbjct: 136 ---------WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKK 186
Query: 210 FY--SNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELV 267
Y ++ +L D++ + HMIN + ++ + ++ V++N+ RGP++D ++
Sbjct: 187 GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246
Query: 268 RCLVQGEIKGAGLDVFENE 286
R L G+I G +DV+E E
Sbjct: 247 RGLDSGKIFGYAMDVYEGE 265
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 117/259 (45%), Gaps = 24/259 (9%)
Query: 43 FLKAWESPLP------LDQFLKTH----AQSVEAILSSGGAPVTAETLRLMP--AVRLVM 90
FLK WE D+ L A+ + ++ AETL+ + + +
Sbjct: 16 FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 75
Query: 91 TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASD-RFVKQWLR 149
+ G++++D+A+ + G + N +A+ A +LR A D + + LR
Sbjct: 76 LRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR 135
Query: 150 PRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYP 209
++ IG ++ + VG+VG G IG + + ++ FG + + P +
Sbjct: 136 ---------WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKK 186
Query: 210 FY--SNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELV 267
Y ++ +L D++ + HMIN + ++ + ++ V++N+ RGP++D ++
Sbjct: 187 GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246
Query: 268 RCLVQGEIKGAGLDVFENE 286
R L G+I G +DV+E E
Sbjct: 247 RGLDSGKIFGYAMDVYEGE 265
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 109/255 (42%), Gaps = 22/255 (8%)
Query: 42 KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMP------AVRLVMTTSAG 95
+ LKA + LP + L+ QS L + AE R P + +T AG
Sbjct: 20 RLLKA--AHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLAKANKLSWFQSTYAG 77
Query: 96 LNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAE 155
++ + A CRR + N +F +++ G L+ L+R + KQ L +
Sbjct: 78 VDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQ 136
Query: 156 GDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNV- 214
G L G+ + I+G GSIG +A FG + SR+ + + +
Sbjct: 137 G----------LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLP 186
Query: 215 --CELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
++ A D+++ T ETHH+ ++ N+GRG I+E +L+ L
Sbjct: 187 ALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRT 246
Query: 273 GEIKGAGLDVFENEP 287
G++ A LDVFE EP
Sbjct: 247 GKLGMAVLDVFEQEP 261
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 13/196 (6%)
Query: 95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
G N ++ ++ + V N +A++ V + LLR I R R
Sbjct: 80 GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGE--------FRYRMDH 131
Query: 155 EGDCY--SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF-- 210
+ D S I +++ VG++G+G IGS VA+ A G + P PF
Sbjct: 132 DHDFTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFE-PFLT 190
Query: 211 YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCL 270
Y++ + DI+ + L T +MI ++ L + K +IN RG ++D L++ L
Sbjct: 191 YTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKAL 250
Query: 271 VQGEIKGAGLDVFENE 286
GEI GAGLD E
Sbjct: 251 QDGEIAGAGLDTLAGE 266
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 114/253 (45%), Gaps = 25/253 (9%)
Query: 54 DQFLKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
+ L H + I+++ P +T E + ++LV+ G +H+D+ + G +
Sbjct: 52 NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKI 111
Query: 112 A----NAGNVFSEDVADLAVGLLIDLLRN-ISASDRFVKQ-WLRPRQAAEGDCYSLGIGS 165
+ NV S VA+ V ++ L+RN + A ++ + W A D Y +
Sbjct: 112 SVLEVTGSNVVS--VAEHVVMTMLVLVRNFVPAHEQIINHDW--EVAAIAKDAYDIE--- 164
Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTK--KPSVSYPFYSNVCELAA 219
GK + +G G IG V +RL F Y + K + V N+ EL A
Sbjct: 165 ---GKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVA 221
Query: 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279
DI+ + L A T +INK++LS K ++N RG I +++ L G+++G G
Sbjct: 222 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYG 281
Query: 280 LDVFENEPDVPKE 292
DV+ +P PK+
Sbjct: 282 GDVWFPQP-APKD 293
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 114/253 (45%), Gaps = 25/253 (9%)
Query: 54 DQFLKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
+ L H + I+++ P +T E + ++LV+ G +H+D+ + G +
Sbjct: 51 NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKI 110
Query: 112 A----NAGNVFSEDVADLAVGLLIDLLRN-ISASDRFVKQ-WLRPRQAAEGDCYSLGIGS 165
+ NV S VA+ V ++ L+RN + A ++ + W A D Y +
Sbjct: 111 SVLEVTGSNVVS--VAEHVVMTMLVLVRNFVPAHEQIINHDW--EVAAIAKDAYDIE--- 163
Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTK--KPSVSYPFYSNVCELAA 219
GK + +G G IG V +RL F Y + K + V N+ EL A
Sbjct: 164 ---GKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVA 220
Query: 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279
DI+ + L A T +INK++LS K ++N RG I +++ L G+++G G
Sbjct: 221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYG 280
Query: 280 LDVFENEPDVPKE 292
DV+ +P PK+
Sbjct: 281 GDVWFPQP-APKD 292
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 14/266 (5%)
Query: 34 ECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEA-ILSSGGAPVTAETLRLMPAVRLVMTT 92
+CFS + +K + + + L VEA +L VT + L +P ++++ T
Sbjct: 19 DCFSLLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQT 78
Query: 93 -----SAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ- 146
AG H+D+ C +G+ V G A+L L++ R I +K
Sbjct: 79 GRVSRDAG-GHIDLEACTDKGVVVLE-GKGSPVAPAELTWALVMAAQRRIPQYVASLKHG 136
Query: 147 -WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSI----SYNSRT 201
W + + + GIG L G+ +GI G G IG LVA AFG ++ NS+
Sbjct: 137 AWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKE 196
Query: 202 KKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII 261
+ + + + L D+L + L ET +I L+ + + +N R ++
Sbjct: 197 RARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELV 256
Query: 262 DEQELVRCLVQGEIKGAGLDVFENEP 287
+E +V L +G A +DVFE EP
Sbjct: 257 EENGMVTALNRGRPGMAAIDVFETEP 282
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA---NCDILIICC 228
VGI G G +G+ VA+ L A+G + SR++K Y EL A +LI
Sbjct: 142 VGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLL 201
Query: 229 GLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288
TA+T +IN ++L L V+N+ RG + E +L+ L G++KGA LDVF EP
Sbjct: 202 PNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP- 260
Query: 289 VPKE 292
+P+E
Sbjct: 261 LPQE 264
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 26/229 (11%)
Query: 71 GGAPVTAETLRLMPAVRLVMTTSAGL-NHVDIAECRRRGITVANAGNVFSEDVADLAVGL 129
G P++AETL PA+R ++ + L N+ +RGI V G VF+E VA++ +G
Sbjct: 82 GQPPLSAETLARXPALRSILNVESNLLNNXPYEVLFQRGIHVVTTGQVFAEPVAEIGLGF 141
Query: 130 LIDLLRNISASDRFVKQ----WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVA 185
+ L R I +D ++ W EG+ + + G +GIVG G +G +
Sbjct: 142 ALALARGIVDADIAFQEGTELW-----GGEGNASA----RLIAGSEIGIVGFGDLGKALR 192
Query: 186 KRLDAFGCSISYNSRTKKPSVSYPFY-------SNVCELAANCDILIICCGLTAETHHMI 238
+ L F I R P + +++ ++ D + + +T+E +
Sbjct: 193 RVLSGFRARI----RVFDPWLPRSXLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFL 248
Query: 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
+ S+ + I + R ++D L + G I A DV+ EP
Sbjct: 249 GAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DVYPEEP 296
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 17/230 (7%)
Query: 67 ILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLA 126
I+ VT + + ++++ GL+++D E +R I V A ++ +L
Sbjct: 50 IVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELT 109
Query: 127 VGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAK 186
+GL+I R + S K + + G +L GK +GIVG G IG+ V
Sbjct: 110 IGLMIAAARKMYTSMALAKSGIFKKIE----------GLELAGKTIGIVGFGRIGTKVGI 159
Query: 187 RLDAFGCSI-SY---NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
+A G + +Y + R K ++ S + EL N D++ + ++ + +I+
Sbjct: 160 IANAMGMKVLAYDILDIREKAEKINAKAVS-LEELLKNSDVISLHVTVSKDAKPIIDYPQ 218
Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
+ +++N R ++ + L+ + +G++ DVF NEP PKE
Sbjct: 219 FELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP--PKE 266
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
G N VD+ +RGI V NA + VA+L +G L+ LLR + ++ +A
Sbjct: 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA---------KAH 135
Query: 155 EGDCYSLGIGS-KLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYS 212
G L GS + GK++GI+G G IG+ + ++ G + Y+ K P +
Sbjct: 136 RGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQ 195
Query: 213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
++ +L D++ + T +M+ + +S + ++IN RG ++D L L
Sbjct: 196 HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS 255
Query: 273 GEIKGAGLDVFENEP 287
+ GA +DVF EP
Sbjct: 256 KHLAGAAIDVFPTEP 270
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
G N VD+ +RGI V NA + VA+L +G L+ LLR + ++ +A
Sbjct: 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA---------KAH 135
Query: 155 EGDCYSLGIGS-KLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYS 212
G L GS + GK++GI+G G IG+ + ++ G + Y+ K P +
Sbjct: 136 RGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQ 195
Query: 213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
++ +L D++ + T +M+ + +S + ++IN RG ++D L L
Sbjct: 196 HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS 255
Query: 273 GEIKGAGLDVFENEP 287
+ GA +DVF EP
Sbjct: 256 KHLAGAAIDVFPTEP 270
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
G N VD+ +RGI V NA + VA+L +G L+ LLR + ++ +A
Sbjct: 84 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA---------KAH 134
Query: 155 EGDCYSLGIGS-KLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYS 212
G L GS + GK++GI+G G IG+ + ++ G + Y+ K P +
Sbjct: 135 RGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQ 194
Query: 213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
++ +L D++ + T +M+ + +S + ++IN RG ++D L L
Sbjct: 195 HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALAS 254
Query: 273 GEIKGAGLDVFENEP 287
+ GA +DVF EP
Sbjct: 255 KHLAGAAIDVFPTEP 269
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 106/235 (45%), Gaps = 26/235 (11%)
Query: 55 QFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA 114
Q L A +++A+ +G VT +LR + G++++D+ + + G + N
Sbjct: 54 QQLDYTADTLQALADAG---VTKMSLR-----------NVGVDNIDMDKAKELGFQITNV 99
Query: 115 GNVFSEDVADLAVGLLIDLLRNISASD-RFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG 173
+A+ A +LR D + K+ LR ++ IG ++ + VG
Sbjct: 100 PVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLR---------WAPTIGREVRDQVVG 150
Query: 174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFY--SNVCELAANCDILIICCGLT 231
+VG G IG + + ++ FG + K P + Y ++ +L D++ +
Sbjct: 151 VVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDSLDDLYKQADVISLHVPDV 210
Query: 232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
HMIN + ++ + V++N RG ++D ++R L G+I G +D +E+E
Sbjct: 211 PANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDE 265
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 36/244 (14%)
Query: 50 PLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGI 109
P+P+++ A V ++ E+L + V T +AG +HVD A ++ GI
Sbjct: 32 PIPVEELNHADALXVRSVTK------VNESLLSGTPINFVGTATAGTDHVDEAWLKQAGI 85
Query: 110 TVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGG 169
+ A + V + L+ L AE D +SL
Sbjct: 86 GFSAAPGCNAIAVVEYVFSALLXL--------------------AERDGFSLR------D 119
Query: 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCG 229
+ +GIVG+G++GS + RL+A G + + + EL D+L
Sbjct: 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTP 179
Query: 230 LTAE----THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN 285
L + T H+ ++ ++ L ++IN RGP++D L+ L G+ LDV+E
Sbjct: 180 LYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEG 239
Query: 286 EPDV 289
EPD+
Sbjct: 240 EPDL 243
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 100/233 (42%), Gaps = 12/233 (5%)
Query: 61 AQSVEAILSSGGAPVTAETLRLMP--AVRLVMTTSAGLNHVDIAECRRRGITVANAGNVF 118
A +A++ G + L + V+ ++T +AG +H+D + G +A
Sbjct: 43 AAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYS 102
Query: 119 SEDVADLAVGLLIDLLRNIS-ASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGL 177
+A+LAV + LLR+ + + R K+ + + ++ VG+VGL
Sbjct: 103 PNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVD--------AFMFSKEVRNCTVGVVGL 154
Query: 178 GSIGSLVAKRLDAFGCS-ISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHH 236
G IG + A+ G + I + K Y ++ E+ DI+ I E
Sbjct: 155 GRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGA 214
Query: 237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV 289
++ + L + +++N RG ++D + ++ + G++ G G DV + E V
Sbjct: 215 VVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASV 267
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 11/195 (5%)
Query: 95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
G N VD+ +RGI V NA + VA+L +G L+ LLR + ++ +A
Sbjct: 79 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN---------AKAH 129
Query: 155 EGDCYSLGIGS-KLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYS 212
G L GS + GK++GI+G G IG+ + ++ G + Y+ K P +
Sbjct: 130 RGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQ 189
Query: 213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
++ +L D++ + T + + +S ++IN RG ++D L L
Sbjct: 190 HLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALAS 249
Query: 273 GEIKGAGLDVFENEP 287
+ GA +DVF EP
Sbjct: 250 KHLAGAAIDVFPTEP 264
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 11/195 (5%)
Query: 95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
G N VD+ +RGI V NA + VA+L +G L+ LLR + ++ +A
Sbjct: 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA---------KAH 135
Query: 155 EGDCYSLGIGS-KLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYS 212
G L GS + GK++GI+G G IG+ + ++ G + Y+ K P +
Sbjct: 136 RGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQ 195
Query: 213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
++ +L D++ + T + + +S ++IN RG ++D L L
Sbjct: 196 HLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALAS 255
Query: 273 GEIKGAGLDVFENEP 287
+ GA +DVF EP
Sbjct: 256 KHLAGAAIDVFPTEP 270
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 14/208 (6%)
Query: 63 SVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDV 122
+VEA L S +TAE L P ++ + +AGL+H+ E +TVA ++ V
Sbjct: 31 NVEAALVS---RITAEELAKXPRLKFIQVVTAGLDHLPW-ESIPPHVTVAGNAGSNADAV 86
Query: 123 ADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGS 182
A+ A+ LL+ + R ++ + ++ G + + + G++V ++GLG IG+
Sbjct: 87 AEFALALLLAPYK------RIIQYGEKXKRGDYGRDVEIPL---IQGEKVAVLGLGEIGT 137
Query: 183 LVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
V K L A G + SRT K + F +++ E + L T ++ Q
Sbjct: 138 RVGKILAALGAQVRGFSRTPKEG-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQH 196
Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCL 270
L+ ++ V +N+GR ++D ++R L
Sbjct: 197 LALXAEDAVFVNVGRAEVLDRDGVLRIL 224
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 11/219 (5%)
Query: 73 APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
A V + L + + SAG++H+D+ + +NAG +S VA+ A LL+
Sbjct: 37 AQVIKDRYVLGKRTKXIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLA 95
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
+NI ++ K + RQ+ Y GK +GI+G G IG VA AFG
Sbjct: 96 HAKNILENNELXKAGIF-RQSPTTLLY---------GKALGILGYGGIGRRVAHLAKAFG 145
Query: 193 CSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV 252
+ +R+ + +L D ++I LT +T +N ++L+ K +
Sbjct: 146 XRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTI 205
Query: 253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK 291
+N+ R ++ + + + L + DV+ NEP++ +
Sbjct: 206 VNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITE 244
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
T H++++ L+AL ++N RG ++D Q L R L G LDV+E EP EL
Sbjct: 185 TRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL 244
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCG 229
++ G +GLG +GS +AK L GCS++ +R+ P + + E AA ++ C
Sbjct: 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRS--PEKAEELAALGAERAATPXEVVESCP 59
Query: 230 LTAETHHMINKQVLSALGKEGVVINIGRG 258
+T GK GV+ IG G
Sbjct: 60 VTFAMLADPAAAEEVCFGKHGVLEGIGEG 88
>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
pdb|3TWO|B Chain B, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
Length = 348
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISY---NSRTKKPSVSY---PFYSNVCELAANCD 222
G +VG+ G G +GS+ K A G +S N K+ ++S FY++ + D
Sbjct: 177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELD 236
Query: 223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI 260
+I T TH+ + K L L G + +G P+
Sbjct: 237 FII----STIPTHYDL-KDYLKLLTYNGDLALVGLPPV 269
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 170 KRVGIVGLGSIGSLVAKRLDAFGCSISY----NSRTKKPSVSYPFYSNVCELAANCDILI 225
+++GI+GLG++G+ VA L A G + Y + K + F + L A+ +I+I
Sbjct: 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 264 QELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
+EL+R L + E++ A L VF N+ D+P +
Sbjct: 90 EELMRMLAEDELRDAVLLVFANKQDLPNAM 119
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 264 QELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
+EL+R L + E++ A L VF N+ D+P +
Sbjct: 88 EELMRMLAEDELRDAVLLVFANKQDLPNAM 117
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 264 QELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
+EL+R L + E++ A L VF N+ D+P +
Sbjct: 105 EELMRMLAEDELRDAVLLVFANKQDLPNAM 134
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 264 QELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
+EL+R L + E++ A L VF N+ D+P +
Sbjct: 104 EELMRMLAEDELRDAVLLVFANKQDLPNAM 133
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 164 GSKLGGKRVGIVGLGSIGSLVAKRL 188
G L G+RVG++G GS G V L
Sbjct: 206 GKSLAGRRVGVIGTGSTGQQVITSL 230
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 164 GSKLGGKRVGIVGLGSIGSLVAKRL 188
G L G+RVG++G GS G V L
Sbjct: 173 GKSLAGRRVGVIGTGSTGQQVITSL 197
>pdb|3CUY|A Chain A, Crystal Structure Of Gumk Mutant D157a
pdb|3CV3|A Chain A, Crystal Structure Of Gumk Mutant D157a In Complex With Udp
Length = 406
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 47 WESPLPLDQFLKTHAQSVEAILSSGGAPVTAE-TLRLMPAVRLVMTTSAGLNHVDIAECR 105
W + P Q L +S + SG A E R+ PA +LV SAGL+ +++A
Sbjct: 109 WYAAHPPKQLLDWMRESDVIVFESGIAVAFIELAKRVNPAAKLVYRASAGLSTINVASYI 168
Query: 106 RR 107
R
Sbjct: 169 ER 170
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 264 QELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
+EL+R L + E++ A L VF N+ D+P +
Sbjct: 253 EELMRMLAEDELRDAVLLVFANKQDLPNAM 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,917,277
Number of Sequences: 62578
Number of extensions: 355581
Number of successful extensions: 1083
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 76
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)