Query 022233
Match_columns 300
No_of_seqs 276 out of 2129
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1052 LdhA Lactate dehydroge 100.0 1.8E-64 3.9E-69 468.5 27.7 274 15-298 1-279 (324)
2 PRK15409 bifunctional glyoxyla 100.0 3.8E-64 8.2E-69 467.9 29.3 274 15-300 1-281 (323)
3 COG0111 SerA Phosphoglycerate 100.0 5.3E-64 1.1E-68 465.7 26.3 272 15-300 2-278 (324)
4 PRK08410 2-hydroxyacid dehydro 100.0 3.1E-62 6.8E-67 453.5 29.5 273 18-300 2-279 (311)
5 PRK13243 glyoxylate reductase; 100.0 1.5E-61 3.3E-66 452.8 29.3 277 15-300 1-284 (333)
6 PRK06487 glycerate dehydrogena 100.0 3.9E-60 8.5E-65 440.5 30.3 274 18-300 2-280 (317)
7 PRK06932 glycerate dehydrogena 100.0 7.3E-60 1.6E-64 438.0 29.5 239 57-300 38-282 (314)
8 PRK11790 D-3-phosphoglycerate 100.0 6.6E-60 1.4E-64 452.2 29.6 271 16-300 10-288 (409)
9 PLN02306 hydroxypyruvate reduc 100.0 1.4E-59 3E-64 445.6 29.3 276 15-300 14-316 (386)
10 PLN02928 oxidoreductase family 100.0 1.8E-59 3.9E-64 440.7 27.5 272 12-300 14-307 (347)
11 PLN03139 formate dehydrogenase 100.0 9E-59 1.9E-63 438.9 30.7 257 37-300 71-336 (386)
12 PRK07574 formate dehydrogenase 100.0 9.6E-59 2.1E-63 438.9 28.4 257 37-300 64-329 (385)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 6.2E-58 1.3E-62 451.5 28.6 268 18-300 1-273 (525)
14 KOG0068 D-3-phosphoglycerate d 100.0 1.1E-58 2.5E-63 417.7 21.0 267 18-300 8-283 (406)
15 PRK13581 D-3-phosphoglycerate 100.0 4.8E-57 1E-61 445.3 29.3 267 18-300 2-274 (526)
16 PRK12480 D-lactate dehydrogena 100.0 1.2E-55 2.6E-60 412.2 25.3 273 17-300 2-292 (330)
17 PRK08605 D-lactate dehydrogena 100.0 2.4E-55 5.2E-60 411.0 24.3 274 14-300 1-294 (332)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 4.8E-55 1E-59 401.9 21.5 229 66-300 64-297 (336)
19 PRK15438 erythronate-4-phospha 100.0 2.4E-53 5.1E-58 400.6 27.0 244 18-298 2-249 (378)
20 PRK00257 erythronate-4-phospha 100.0 3.9E-52 8.5E-57 393.4 26.8 246 17-300 1-250 (381)
21 PRK15469 ghrA bifunctional gly 100.0 4.9E-52 1.1E-56 385.0 24.8 225 62-300 37-271 (312)
22 PRK06436 glycerate dehydrogena 100.0 2.2E-51 4.7E-56 378.8 25.1 218 62-300 33-251 (303)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 8.3E-44 1.8E-48 305.5 12.5 167 127-300 1-172 (178)
24 KOG0067 Transcription factor C 100.0 1.2E-28 2.7E-33 225.3 10.0 234 54-289 64-302 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 6.3E-22 1.4E-26 190.5 14.2 167 90-290 196-368 (476)
26 TIGR02853 spore_dpaA dipicolin 99.8 7.2E-21 1.6E-25 174.8 10.8 164 74-278 81-259 (287)
27 PF00389 2-Hacid_dh: D-isomer 99.7 4.5E-18 9.8E-23 138.9 8.4 101 19-126 1-101 (133)
28 PRK08306 dipicolinate synthase 99.7 5.9E-16 1.3E-20 143.0 13.0 163 59-257 51-242 (296)
29 PLN02494 adenosylhomocysteinas 99.6 6.4E-16 1.4E-20 148.8 9.5 116 166-287 251-374 (477)
30 COG2084 MmsB 3-hydroxyisobutyr 99.6 9.2E-15 2E-19 133.2 10.6 110 170-281 1-118 (286)
31 PF03446 NAD_binding_2: NAD bi 99.5 8E-15 1.7E-19 123.9 6.7 107 170-276 2-114 (163)
32 PRK13403 ketol-acid reductoiso 99.5 2.1E-14 4.5E-19 132.4 9.5 88 165-254 12-104 (335)
33 TIGR00936 ahcY adenosylhomocys 99.5 2.9E-14 6.2E-19 136.2 10.5 115 166-285 192-312 (406)
34 TIGR01505 tartro_sem_red 2-hyd 99.4 6.6E-13 1.4E-17 122.2 9.7 106 171-276 1-113 (291)
35 PRK11559 garR tartronate semia 99.4 9.4E-13 2E-17 121.4 9.9 118 170-287 3-127 (296)
36 PRK12490 6-phosphogluconate de 99.4 1.6E-12 3.5E-17 120.3 10.6 109 170-281 1-117 (299)
37 PRK15461 NADH-dependent gamma- 99.4 1.4E-12 3.1E-17 120.5 10.1 110 170-281 2-118 (296)
38 PLN02350 phosphogluconate dehy 99.4 2.5E-12 5.5E-17 125.9 10.2 116 171-287 8-138 (493)
39 PRK05476 S-adenosyl-L-homocyst 99.3 3.6E-12 7.7E-17 122.6 10.2 152 90-268 154-312 (425)
40 PRK09599 6-phosphogluconate de 99.3 7.7E-12 1.7E-16 115.8 10.6 109 170-281 1-117 (301)
41 PRK15059 tartronate semialdehy 99.3 1.3E-11 2.9E-16 113.8 9.4 111 170-282 1-117 (292)
42 KOG0409 Predicted dehydrogenas 99.3 1.7E-11 3.6E-16 110.9 8.4 110 167-276 33-150 (327)
43 PRK05479 ketol-acid reductoiso 99.2 1.2E-11 2.7E-16 115.2 7.6 116 165-291 13-134 (330)
44 PTZ00142 6-phosphogluconate de 99.2 5.5E-11 1.2E-15 116.3 10.8 117 170-287 2-132 (470)
45 PLN02858 fructose-bisphosphate 99.2 5.4E-11 1.2E-15 129.0 10.9 114 169-282 4-124 (1378)
46 TIGR00872 gnd_rel 6-phosphoglu 99.2 8.4E-11 1.8E-15 108.8 10.7 105 170-276 1-113 (298)
47 PF00670 AdoHcyase_NAD: S-aden 99.2 3.3E-11 7.2E-16 101.0 7.0 100 165-269 19-124 (162)
48 PLN02712 arogenate dehydrogena 99.2 8E-11 1.7E-15 119.6 9.5 108 164-272 364-476 (667)
49 PLN02858 fructose-bisphosphate 99.1 1.6E-10 3.5E-15 125.3 10.2 111 169-281 324-443 (1378)
50 TIGR01692 HIBADH 3-hydroxyisob 99.1 1.4E-10 2.9E-15 106.8 8.2 106 174-281 1-113 (288)
51 TIGR00873 gnd 6-phosphoglucona 99.1 2.7E-10 5.9E-15 111.3 9.5 115 171-286 1-128 (467)
52 PRK14619 NAD(P)H-dependent gly 99.0 9.5E-10 2.1E-14 102.2 10.2 84 168-261 3-87 (308)
53 cd00401 AdoHcyase S-adenosyl-L 99.0 1.3E-09 2.7E-14 104.8 10.3 99 165-268 198-302 (413)
54 PLN02256 arogenate dehydrogena 99.0 7.5E-10 1.6E-14 102.7 8.1 105 167-272 34-143 (304)
55 PRK15182 Vi polysaccharide bio 99.0 1.3E-09 2.8E-14 105.6 7.5 128 169-299 6-171 (425)
56 TIGR00465 ilvC ketol-acid redu 99.0 3.1E-09 6.7E-14 99.0 9.5 92 167-261 1-98 (314)
57 PLN02545 3-hydroxybutyryl-CoA 98.9 2.8E-09 6.2E-14 98.3 8.5 100 170-272 5-133 (295)
58 PRK14194 bifunctional 5,10-met 98.9 3.9E-09 8.4E-14 97.1 9.2 80 164-259 154-234 (301)
59 PRK09260 3-hydroxybutyryl-CoA 98.9 3.2E-09 7E-14 97.7 8.4 110 170-283 2-141 (288)
60 PF03807 F420_oxidored: NADP o 98.9 9.6E-10 2.1E-14 84.2 4.2 85 171-258 1-96 (96)
61 PF07991 IlvN: Acetohydroxy ac 98.9 3.6E-09 7.7E-14 88.4 6.6 85 167-253 2-92 (165)
62 PLN02688 pyrroline-5-carboxyla 98.9 8.7E-09 1.9E-13 93.5 9.6 98 170-271 1-108 (266)
63 PLN02712 arogenate dehydrogena 98.9 4.6E-09 9.9E-14 106.9 8.3 104 166-270 49-157 (667)
64 PRK07417 arogenate dehydrogena 98.8 6.7E-09 1.5E-13 95.2 7.2 89 170-260 1-95 (279)
65 PRK11064 wecC UDP-N-acetyl-D-m 98.8 1.4E-08 3.1E-13 98.2 9.7 104 170-273 4-136 (415)
66 PRK11199 tyrA bifunctional cho 98.8 3E-08 6.5E-13 94.7 11.2 91 168-269 97-188 (374)
67 PRK07066 3-hydroxybutyryl-CoA 98.8 5.8E-08 1.3E-12 90.7 12.2 112 170-285 8-145 (321)
68 PRK05225 ketol-acid reductoiso 98.8 8.2E-09 1.8E-13 99.1 6.6 91 165-259 32-133 (487)
69 PRK08655 prephenate dehydrogen 98.8 1.4E-08 3.1E-13 98.7 8.4 101 170-272 1-108 (437)
70 TIGR01724 hmd_rel H2-forming N 98.8 3.3E-08 7.3E-13 91.0 10.0 88 181-272 32-129 (341)
71 PRK07530 3-hydroxybutyryl-CoA 98.8 2.1E-08 4.5E-13 92.4 8.8 110 170-284 5-144 (292)
72 COG1023 Gnd Predicted 6-phosph 98.8 3.1E-08 6.7E-13 87.3 9.1 112 170-284 1-120 (300)
73 PRK14618 NAD(P)H-dependent gly 98.8 2.7E-08 5.9E-13 93.1 9.4 98 169-272 4-123 (328)
74 PRK14188 bifunctional 5,10-met 98.8 3.1E-08 6.7E-13 91.2 9.4 79 164-259 153-233 (296)
75 PRK08818 prephenate dehydrogen 98.8 3.8E-08 8.2E-13 93.5 9.6 85 167-259 2-91 (370)
76 TIGR03026 NDP-sugDHase nucleot 98.7 3.4E-08 7.4E-13 95.4 9.3 101 170-271 1-135 (411)
77 PRK07531 bifunctional 3-hydrox 98.7 3.7E-08 8E-13 97.4 9.7 112 170-285 5-141 (495)
78 PRK12491 pyrroline-5-carboxyla 98.7 2.3E-08 4.9E-13 91.5 7.4 99 169-271 2-110 (272)
79 PRK07679 pyrroline-5-carboxyla 98.7 3.2E-08 7E-13 90.6 8.4 99 169-271 3-112 (279)
80 PRK07502 cyclohexadienyl dehyd 98.7 2.8E-08 6.1E-13 92.2 7.5 89 169-259 6-103 (307)
81 TIGR00518 alaDH alanine dehydr 98.7 2E-08 4.4E-13 95.6 6.6 96 166-261 164-274 (370)
82 cd01065 NAD_bind_Shikimate_DH 98.7 5.7E-08 1.2E-12 80.7 8.5 105 166-275 16-133 (155)
83 PF10727 Rossmann-like: Rossma 98.7 9.7E-09 2.1E-13 83.2 3.5 103 168-274 9-120 (127)
84 PRK06545 prephenate dehydrogen 98.7 4.1E-08 8.8E-13 93.3 8.3 97 170-268 1-107 (359)
85 cd01080 NAD_bind_m-THF_DH_Cycl 98.7 8.3E-08 1.8E-12 81.5 9.1 82 165-262 40-122 (168)
86 PRK08268 3-hydroxy-acyl-CoA de 98.7 4.8E-08 1E-12 96.7 8.4 114 170-288 8-151 (507)
87 PRK14189 bifunctional 5,10-met 98.7 6.9E-08 1.5E-12 88.3 8.8 81 164-260 153-234 (285)
88 PRK08507 prephenate dehydrogen 98.7 4.4E-08 9.5E-13 89.5 7.5 95 170-272 1-103 (275)
89 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 1.1E-07 2.5E-12 83.0 9.7 105 164-276 23-134 (200)
90 PRK13302 putative L-aspartate 98.7 7.7E-08 1.7E-12 87.9 8.6 103 169-276 6-118 (271)
91 PRK14179 bifunctional 5,10-met 98.7 8.4E-08 1.8E-12 87.7 8.5 80 164-259 153-233 (284)
92 COG0287 TyrA Prephenate dehydr 98.7 7.1E-08 1.5E-12 88.4 7.9 102 169-272 3-114 (279)
93 PRK07819 3-hydroxybutyryl-CoA 98.7 6.6E-08 1.4E-12 89.0 7.7 115 170-288 6-150 (286)
94 PRK06035 3-hydroxyacyl-CoA deh 98.7 1.4E-07 3E-12 86.9 9.9 114 170-287 4-149 (291)
95 PRK00094 gpsA NAD(P)H-dependen 98.6 5.4E-08 1.2E-12 90.5 7.1 90 170-261 2-110 (325)
96 COG2085 Predicted dinucleotide 98.6 1.3E-07 2.8E-12 82.3 8.7 86 170-258 2-95 (211)
97 PRK09287 6-phosphogluconate de 98.6 8.8E-08 1.9E-12 93.5 8.4 107 180-287 1-120 (459)
98 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.6 1E-07 2.3E-12 94.2 8.9 114 170-288 6-149 (503)
99 PRK15057 UDP-glucose 6-dehydro 98.6 1.8E-07 4E-12 89.7 9.7 113 170-291 1-146 (388)
100 PF01210 NAD_Gly3P_dh_N: NAD-d 98.6 7.9E-08 1.7E-12 80.7 6.1 87 171-259 1-106 (157)
101 COG0499 SAM1 S-adenosylhomocys 98.6 1.2E-07 2.6E-12 87.9 7.6 98 166-268 206-309 (420)
102 PRK06130 3-hydroxybutyryl-CoA 98.6 1.5E-07 3.2E-12 87.5 8.4 101 170-272 5-129 (311)
103 PRK08293 3-hydroxybutyryl-CoA 98.6 5.2E-07 1.1E-11 83.0 11.4 109 170-281 4-142 (287)
104 PRK06476 pyrroline-5-carboxyla 98.6 1.9E-07 4.1E-12 84.5 7.9 98 170-273 1-108 (258)
105 PRK05808 3-hydroxybutyryl-CoA 98.6 4E-07 8.6E-12 83.5 10.1 100 170-272 4-132 (282)
106 PRK07680 late competence prote 98.6 2E-07 4.3E-12 85.1 8.0 98 170-271 1-109 (273)
107 PRK06129 3-hydroxyacyl-CoA deh 98.5 1.6E-07 3.5E-12 87.2 7.3 112 170-285 3-143 (308)
108 PRK06928 pyrroline-5-carboxyla 98.5 5.1E-07 1.1E-11 82.7 10.2 102 170-275 2-115 (277)
109 PF01488 Shikimate_DH: Shikima 98.5 8.8E-08 1.9E-12 78.4 3.7 94 166-262 9-115 (135)
110 PRK14175 bifunctional 5,10-met 98.5 6.6E-07 1.4E-11 82.0 9.1 80 164-259 153-233 (286)
111 PRK14806 bifunctional cyclohex 98.4 1.1E-06 2.4E-11 90.8 9.7 101 170-272 4-113 (735)
112 PRK05472 redox-sensing transcr 98.4 3.1E-07 6.6E-12 81.0 4.6 127 120-272 61-201 (213)
113 PRK12557 H(2)-dependent methyl 98.4 2E-06 4.2E-11 81.2 9.7 90 181-271 32-132 (342)
114 PRK11880 pyrroline-5-carboxyla 98.4 1.6E-06 3.6E-11 78.6 8.9 96 170-271 3-107 (267)
115 TIGR01915 npdG NADPH-dependent 98.4 7.5E-07 1.6E-11 78.8 6.4 89 170-261 1-106 (219)
116 PF03721 UDPG_MGDP_dh_N: UDP-g 98.4 8.8E-07 1.9E-11 76.5 6.5 103 170-272 1-137 (185)
117 KOG1370 S-adenosylhomocysteine 98.3 9.1E-07 2E-11 80.5 6.3 90 166-260 211-305 (434)
118 PTZ00431 pyrroline carboxylate 98.3 3E-06 6.4E-11 77.0 9.2 97 169-271 3-103 (260)
119 cd05191 NAD_bind_amino_acid_DH 98.3 5.4E-06 1.2E-10 62.4 8.7 66 166-256 20-86 (86)
120 TIGR00561 pntA NAD(P) transhyd 98.3 9.2E-06 2E-10 80.1 12.5 176 63-256 64-284 (511)
121 PRK13304 L-aspartate dehydroge 98.3 2.3E-06 4.9E-11 78.0 7.6 102 170-276 2-115 (265)
122 COG0345 ProC Pyrroline-5-carbo 98.3 4E-06 8.6E-11 76.1 8.9 98 170-275 2-112 (266)
123 COG0059 IlvC Ketol-acid reduct 98.3 2.6E-06 5.7E-11 77.6 7.6 90 166-258 15-110 (338)
124 PRK07634 pyrroline-5-carboxyla 98.3 4E-06 8.6E-11 75.0 8.8 101 168-273 3-114 (245)
125 COG0362 Gnd 6-phosphogluconate 98.2 7.1E-06 1.5E-10 77.3 10.3 118 169-287 3-133 (473)
126 PRK10792 bifunctional 5,10-met 98.2 7.2E-06 1.6E-10 75.1 10.0 77 164-256 154-231 (285)
127 PRK08229 2-dehydropantoate 2-r 98.2 3.8E-06 8.2E-11 78.9 8.4 104 170-277 3-127 (341)
128 cd05212 NAD_bind_m-THF_DH_Cycl 98.2 1.6E-05 3.5E-10 65.5 11.1 80 164-259 23-103 (140)
129 PRK14178 bifunctional 5,10-met 98.2 4E-06 8.7E-11 76.5 8.1 79 164-258 147-226 (279)
130 PF02882 THF_DHG_CYH_C: Tetrah 98.2 8.6E-06 1.9E-10 68.6 9.5 81 164-260 31-112 (160)
131 PRK14192 bifunctional 5,10-met 98.2 6.7E-06 1.5E-10 75.6 9.1 80 164-259 154-234 (283)
132 PRK14176 bifunctional 5,10-met 98.2 6E-06 1.3E-10 75.6 8.6 78 164-257 159-237 (287)
133 cd05213 NAD_bind_Glutamyl_tRNA 98.2 3.2E-06 6.9E-11 78.8 6.8 94 167-262 176-279 (311)
134 PF02737 3HCDH_N: 3-hydroxyacy 98.2 2.3E-06 4.9E-11 73.6 5.1 110 171-284 1-139 (180)
135 TIGR01035 hemA glutamyl-tRNA r 98.2 2.2E-06 4.7E-11 83.1 5.3 95 166-263 177-284 (417)
136 PF01262 AlaDh_PNT_C: Alanine 98.2 1.9E-06 4.2E-11 73.1 4.4 92 165-256 16-139 (168)
137 KOG2380 Prephenate dehydrogena 98.2 3.9E-06 8.4E-11 77.6 6.2 104 169-273 52-160 (480)
138 PRK14191 bifunctional 5,10-met 98.1 7.6E-06 1.7E-10 74.9 8.2 80 164-259 152-232 (285)
139 cd05311 NAD_bind_2_malic_enz N 98.1 9.2E-06 2E-10 72.3 8.4 110 164-280 20-151 (226)
140 cd01079 NAD_bind_m-THF_DH NAD 98.1 2.1E-05 4.5E-10 68.0 10.2 92 164-262 57-162 (197)
141 PRK06522 2-dehydropantoate 2-r 98.1 1.7E-05 3.6E-10 73.1 10.2 103 170-276 1-119 (304)
142 COG0686 Ald Alanine dehydrogen 98.1 2.7E-06 5.9E-11 77.8 4.7 97 166-262 165-276 (371)
143 PRK12921 2-dehydropantoate 2-r 98.1 1E-05 2.2E-10 74.6 7.6 103 170-276 1-121 (305)
144 PLN00203 glutamyl-tRNA reducta 98.1 5E-06 1.1E-10 82.4 5.8 94 166-262 263-375 (519)
145 COG0240 GpsA Glycerol-3-phosph 98.1 1.4E-05 3E-10 74.3 8.2 96 170-267 2-116 (329)
146 TIGR03376 glycerol3P_DH glycer 98.0 2E-05 4.2E-10 74.4 8.9 90 171-262 1-122 (342)
147 PRK00045 hemA glutamyl-tRNA re 98.0 7.3E-06 1.6E-10 79.6 5.4 94 166-262 179-286 (423)
148 PRK06141 ornithine cyclodeamin 98.0 2E-05 4.3E-10 73.6 8.0 94 168-268 124-230 (314)
149 PRK14170 bifunctional 5,10-met 98.0 5.5E-05 1.2E-09 69.3 10.7 81 164-260 152-233 (284)
150 PRK14183 bifunctional 5,10-met 98.0 3.4E-05 7.3E-10 70.6 9.2 78 164-257 152-230 (281)
151 PRK09424 pntA NAD(P) transhydr 98.0 5.5E-05 1.2E-09 74.8 11.3 178 63-257 65-286 (509)
152 PTZ00345 glycerol-3-phosphate 98.0 2.9E-05 6.2E-10 73.9 8.8 93 169-263 11-136 (365)
153 cd01078 NAD_bind_H4MPT_DH NADP 98.0 1.5E-05 3.3E-10 68.9 6.2 96 164-263 23-136 (194)
154 PLN02516 methylenetetrahydrofo 98.0 5E-05 1.1E-09 70.0 9.6 80 164-259 162-242 (299)
155 PRK14171 bifunctional 5,10-met 97.9 6.8E-05 1.5E-09 68.8 10.3 77 164-256 154-231 (288)
156 PRK14190 bifunctional 5,10-met 97.9 7E-05 1.5E-09 68.7 10.1 81 164-260 153-234 (284)
157 PRK14169 bifunctional 5,10-met 97.9 5.5E-05 1.2E-09 69.2 9.4 80 164-259 151-231 (282)
158 PRK14186 bifunctional 5,10-met 97.9 6E-05 1.3E-09 69.5 9.5 81 164-260 153-234 (297)
159 PRK00258 aroE shikimate 5-dehy 97.9 7.8E-06 1.7E-10 75.0 3.5 107 166-274 120-237 (278)
160 PRK14166 bifunctional 5,10-met 97.9 6.3E-05 1.4E-09 68.9 9.3 78 164-257 152-230 (282)
161 COG0190 FolD 5,10-methylene-te 97.9 4.4E-05 9.5E-10 69.4 7.8 81 164-260 151-232 (283)
162 PRK14174 bifunctional 5,10-met 97.9 6.2E-05 1.3E-09 69.4 8.9 80 164-259 154-238 (295)
163 PRK00676 hemA glutamyl-tRNA re 97.9 4.9E-05 1.1E-09 71.3 8.3 92 166-262 171-267 (338)
164 TIGR00507 aroE shikimate 5-deh 97.9 5.3E-05 1.1E-09 69.1 8.2 104 167-275 115-231 (270)
165 PLN02897 tetrahydrofolate dehy 97.9 7E-05 1.5E-09 70.1 9.0 80 164-259 209-289 (345)
166 PRK14177 bifunctional 5,10-met 97.9 8.7E-05 1.9E-09 67.9 9.4 78 164-257 154-232 (284)
167 PLN02616 tetrahydrofolate dehy 97.9 7.7E-05 1.7E-09 70.2 9.1 80 164-259 226-306 (364)
168 PF13380 CoA_binding_2: CoA bi 97.8 0.00011 2.4E-09 58.5 8.8 102 170-278 1-106 (116)
169 PRK14172 bifunctional 5,10-met 97.8 0.00015 3.2E-09 66.3 10.6 80 164-259 153-233 (278)
170 PRK14620 NAD(P)H-dependent gly 97.8 6.1E-05 1.3E-09 70.4 8.3 88 170-259 1-109 (326)
171 PRK14173 bifunctional 5,10-met 97.8 0.0001 2.2E-09 67.7 9.5 81 164-260 150-231 (287)
172 PRK14181 bifunctional 5,10-met 97.8 0.0001 2.2E-09 67.6 9.3 80 164-259 148-232 (287)
173 PRK14180 bifunctional 5,10-met 97.8 0.00011 2.4E-09 67.2 9.3 78 164-257 153-231 (282)
174 PRK14187 bifunctional 5,10-met 97.8 0.00011 2.5E-09 67.5 9.3 80 164-259 155-235 (294)
175 TIGR02354 thiF_fam2 thiamine b 97.8 0.00015 3.3E-09 63.3 9.4 97 165-262 17-151 (200)
176 COG0373 HemA Glutamyl-tRNA red 97.8 3.5E-05 7.5E-10 74.0 5.7 95 166-263 175-281 (414)
177 PRK12439 NAD(P)H-dependent gly 97.8 9.2E-05 2E-09 69.9 8.6 88 170-260 8-115 (341)
178 PRK14182 bifunctional 5,10-met 97.8 0.00015 3.2E-09 66.4 9.6 80 164-259 152-232 (282)
179 TIGR02371 ala_DH_arch alanine 97.8 5.5E-05 1.2E-09 71.0 6.8 84 169-258 128-224 (325)
180 PRK14184 bifunctional 5,10-met 97.8 9.9E-05 2.2E-09 67.7 8.1 78 164-257 152-234 (286)
181 PRK06249 2-dehydropantoate 2-r 97.8 0.00012 2.5E-09 68.2 8.7 107 169-278 5-127 (313)
182 PRK14982 acyl-ACP reductase; P 97.8 7.4E-05 1.6E-09 70.3 7.4 94 164-263 150-253 (340)
183 PLN02353 probable UDP-glucose 97.7 9.9E-05 2.1E-09 72.6 8.4 127 170-299 2-174 (473)
184 PRK14193 bifunctional 5,10-met 97.7 0.00017 3.6E-09 66.1 9.4 80 164-259 153-235 (284)
185 PRK13940 glutamyl-tRNA reducta 97.7 4.3E-05 9.4E-10 73.9 5.8 89 166-259 178-276 (414)
186 PRK07340 ornithine cyclodeamin 97.7 7.8E-05 1.7E-09 69.3 6.7 84 168-258 124-219 (304)
187 KOG2653 6-phosphogluconate deh 97.7 0.00014 3.1E-09 67.7 8.2 117 170-287 7-136 (487)
188 PRK14167 bifunctional 5,10-met 97.7 0.0002 4.3E-09 66.0 9.0 80 164-259 152-236 (297)
189 TIGR01546 GAPDH-II_archae glyc 97.7 0.00011 2.4E-09 68.9 7.1 82 172-256 1-108 (333)
190 COG0677 WecC UDP-N-acetyl-D-ma 97.6 0.00019 4.2E-09 67.9 8.4 118 170-290 10-166 (436)
191 PF13241 NAD_binding_7: Putati 97.6 2.8E-05 6.1E-10 60.5 2.4 85 166-256 4-91 (103)
192 PRK14185 bifunctional 5,10-met 97.6 0.00029 6.2E-09 64.9 9.2 80 164-259 152-236 (293)
193 PRK14168 bifunctional 5,10-met 97.6 0.00028 6.1E-09 65.1 8.9 80 164-259 156-240 (297)
194 COG1748 LYS9 Saccharopine dehy 97.6 0.00017 3.7E-09 68.9 7.4 100 170-276 2-118 (389)
195 TIGR02992 ectoine_eutC ectoine 97.6 0.00019 4.1E-09 67.4 7.4 83 169-257 129-225 (326)
196 PRK09310 aroDE bifunctional 3- 97.6 0.00024 5.1E-09 70.1 8.4 100 164-275 327-433 (477)
197 smart00859 Semialdhyde_dh Semi 97.6 0.00028 6.1E-09 56.3 7.3 84 171-256 1-99 (122)
198 PRK08618 ornithine cyclodeamin 97.6 0.00018 3.9E-09 67.4 7.0 83 168-257 126-222 (325)
199 PTZ00117 malate dehydrogenase; 97.6 0.00046 1E-08 64.6 9.5 113 167-281 3-151 (319)
200 PRK06444 prephenate dehydrogen 97.5 0.00019 4.1E-09 62.6 6.3 62 170-260 1-63 (197)
201 TIGR01921 DAP-DH diaminopimela 97.5 0.00092 2E-08 62.5 10.9 102 170-276 4-115 (324)
202 PRK11730 fadB multifunctional 97.5 0.00036 7.9E-09 72.1 9.1 114 170-287 314-456 (715)
203 TIGR01470 cysG_Nterm siroheme 97.5 0.0002 4.4E-09 62.8 5.7 67 164-231 4-80 (205)
204 PRK06718 precorrin-2 dehydroge 97.5 0.0003 6.5E-09 61.5 6.7 69 164-232 5-82 (202)
205 COG1250 FadB 3-hydroxyacyl-CoA 97.5 0.00088 1.9E-08 62.2 10.1 115 169-288 3-147 (307)
206 PRK12549 shikimate 5-dehydroge 97.5 0.00022 4.7E-09 65.7 6.0 103 167-273 125-243 (284)
207 PF01113 DapB_N: Dihydrodipico 97.4 0.0011 2.4E-08 53.3 9.3 97 170-272 1-114 (124)
208 TIGR01763 MalateDH_bact malate 97.4 0.00044 9.5E-09 64.4 7.7 111 170-281 2-147 (305)
209 PF02423 OCD_Mu_crystall: Orni 97.4 0.00016 3.4E-09 67.5 4.7 87 170-260 129-228 (313)
210 PRK06046 alanine dehydrogenase 97.4 0.00034 7.4E-09 65.6 6.8 82 169-257 129-224 (326)
211 PRK06823 ornithine cyclodeamin 97.4 0.00034 7.3E-09 65.4 6.6 82 169-256 128-222 (315)
212 TIGR02441 fa_ox_alpha_mit fatt 97.4 0.00061 1.3E-08 70.6 9.1 113 170-286 336-477 (737)
213 PRK13303 L-aspartate dehydroge 97.4 0.00067 1.5E-08 61.8 8.4 102 170-276 2-115 (265)
214 PRK13301 putative L-aspartate 97.4 0.00098 2.1E-08 60.4 9.2 98 170-272 3-112 (267)
215 COG2423 Predicted ornithine cy 97.4 0.00072 1.6E-08 63.4 8.6 83 169-257 130-226 (330)
216 PRK11154 fadJ multifunctional 97.4 0.00083 1.8E-08 69.4 9.8 113 170-286 310-452 (708)
217 PF01118 Semialdhyde_dh: Semia 97.4 0.00037 8E-09 55.7 5.5 83 171-258 1-99 (121)
218 COG1712 Predicted dinucleotide 97.4 0.00055 1.2E-08 60.2 6.8 91 170-265 1-100 (255)
219 TIGR02440 FadJ fatty oxidation 97.3 0.0014 2.9E-08 67.8 10.8 114 170-287 305-448 (699)
220 cd01076 NAD_bind_1_Glu_DH NAD( 97.3 0.0022 4.7E-08 57.2 10.7 104 165-276 27-154 (227)
221 cd00650 LDH_MDH_like NAD-depen 97.3 0.00064 1.4E-08 61.7 7.1 108 172-282 1-148 (263)
222 PRK08291 ectoine utilization p 97.3 0.00059 1.3E-08 64.2 6.9 81 169-255 132-226 (330)
223 cd05313 NAD_bind_2_Glu_DH NAD( 97.3 0.0013 2.8E-08 59.5 8.8 106 164-276 33-172 (254)
224 PRK06407 ornithine cyclodeamin 97.3 0.00079 1.7E-08 62.5 7.6 83 169-257 117-213 (301)
225 TIGR02437 FadB fatty oxidation 97.3 0.00063 1.4E-08 70.3 7.6 113 170-286 314-455 (714)
226 PF01408 GFO_IDH_MocA: Oxidore 97.3 0.00036 7.8E-09 55.1 4.6 102 171-276 2-115 (120)
227 PRK06199 ornithine cyclodeamin 97.3 0.00061 1.3E-08 65.2 6.9 87 169-258 155-261 (379)
228 cd05211 NAD_bind_Glu_Leu_Phe_V 97.2 0.0031 6.6E-08 55.9 10.5 104 165-276 19-145 (217)
229 PRK07589 ornithine cyclodeamin 97.2 0.001 2.2E-08 62.9 7.6 84 169-256 129-225 (346)
230 COG1004 Ugd Predicted UDP-gluc 97.1 0.0027 5.8E-08 60.4 9.5 105 170-274 1-138 (414)
231 COG1064 AdhP Zn-dependent alco 97.1 0.0011 2.4E-08 62.2 6.8 84 169-258 167-261 (339)
232 PRK06719 precorrin-2 dehydroge 97.1 0.001 2.2E-08 55.9 6.0 76 160-238 6-87 (157)
233 TIGR02356 adenyl_thiF thiazole 97.1 0.0016 3.4E-08 57.0 7.4 80 165-245 17-135 (202)
234 PRK00048 dihydrodipicolinate r 97.1 0.0042 9.2E-08 56.3 9.9 61 170-230 2-70 (257)
235 COG0026 PurK Phosphoribosylami 97.1 0.0013 2.7E-08 62.0 6.5 58 169-226 1-68 (375)
236 TIGR01809 Shik-DH-AROM shikima 97.1 0.0026 5.6E-08 58.5 8.4 100 167-272 123-245 (282)
237 PRK06223 malate dehydrogenase; 97.0 0.0026 5.7E-08 58.9 8.5 58 170-228 3-78 (307)
238 PTZ00082 L-lactate dehydrogena 97.0 0.0029 6.4E-08 59.3 8.5 111 167-279 4-153 (321)
239 PRK08306 dipicolinate synthase 97.0 0.0076 1.6E-07 55.8 11.1 105 168-277 1-117 (296)
240 PLN02477 glutamate dehydrogena 97.0 0.0052 1.1E-07 59.4 10.2 105 164-276 201-329 (410)
241 KOG2304 3-hydroxyacyl-CoA dehy 97.0 0.00031 6.7E-09 61.9 1.5 119 166-288 8-161 (298)
242 TIGR02717 AcCoA-syn-alpha acet 97.0 0.0091 2E-07 58.5 11.8 110 167-279 5-126 (447)
243 PRK00683 murD UDP-N-acetylmura 96.9 0.0029 6.3E-08 61.3 8.0 63 169-231 3-70 (418)
244 PRK12548 shikimate 5-dehydroge 96.9 0.0027 5.9E-08 58.6 7.3 103 167-273 124-252 (289)
245 cd05291 HicDH_like L-2-hydroxy 96.9 0.0066 1.4E-07 56.4 9.9 94 170-265 1-124 (306)
246 COG0569 TrkA K+ transport syst 96.9 0.00095 2.1E-08 59.4 4.0 64 170-233 1-79 (225)
247 PF02558 ApbA: Ketopantoate re 96.9 0.00084 1.8E-08 55.3 3.5 105 172-279 1-123 (151)
248 PRK12475 thiamine/molybdopteri 96.9 0.0034 7.4E-08 59.2 7.7 78 165-243 20-138 (338)
249 PRK09414 glutamate dehydrogena 96.8 0.0061 1.3E-07 59.5 9.2 106 164-276 227-362 (445)
250 cd00757 ThiF_MoeB_HesA_family 96.8 0.0039 8.4E-08 55.5 7.3 88 165-256 17-143 (228)
251 PRK05708 2-dehydropantoate 2-r 96.8 0.0045 9.8E-08 57.5 7.8 107 170-279 3-126 (305)
252 PRK14031 glutamate dehydrogena 96.8 0.011 2.3E-07 57.7 10.4 106 164-276 223-361 (444)
253 PF02153 PDH: Prephenate dehyd 96.8 0.0021 4.5E-08 58.3 5.2 86 184-271 1-94 (258)
254 TIGR03026 NDP-sugDHase nucleot 96.8 0.0086 1.9E-07 57.9 9.8 87 167-255 311-409 (411)
255 KOG0023 Alcohol dehydrogenase, 96.7 0.0027 5.8E-08 58.8 5.5 86 168-256 181-279 (360)
256 PRK08269 3-hydroxybutyryl-CoA 96.7 0.01 2.2E-07 55.5 9.5 103 180-285 1-141 (314)
257 PF00185 OTCace: Aspartate/orn 96.7 0.01 2.3E-07 49.8 8.6 96 168-263 1-130 (158)
258 COG1648 CysG Siroheme synthase 96.7 0.0027 5.8E-08 55.9 5.2 69 164-233 7-85 (210)
259 TIGR01850 argC N-acetyl-gamma- 96.7 0.0082 1.8E-07 56.8 8.9 94 170-268 1-111 (346)
260 cd05297 GH4_alpha_glucosidase_ 96.7 0.004 8.8E-08 60.5 6.9 102 170-271 1-160 (423)
261 PF03720 UDPG_MGDP_dh_C: UDP-g 96.7 0.0038 8.2E-08 48.8 5.4 76 179-255 17-100 (106)
262 PLN02968 Probable N-acetyl-gam 96.7 0.0043 9.2E-08 59.5 6.8 97 167-269 36-147 (381)
263 PRK12749 quinate/shikimate deh 96.7 0.0091 2E-07 55.1 8.7 106 166-275 121-250 (288)
264 TIGR00036 dapB dihydrodipicoli 96.7 0.013 2.8E-07 53.4 9.6 100 170-275 2-119 (266)
265 KOG2711 Glycerol-3-phosphate d 96.6 0.0085 1.8E-07 55.9 8.2 91 167-259 19-142 (372)
266 COG0771 MurD UDP-N-acetylmuram 96.6 0.011 2.4E-07 57.7 9.4 120 167-287 5-157 (448)
267 PRK14030 glutamate dehydrogena 96.6 0.0091 2E-07 58.1 8.8 105 164-276 223-362 (445)
268 PRK00066 ldh L-lactate dehydro 96.6 0.0044 9.5E-08 57.9 6.4 96 168-265 5-129 (315)
269 PRK05690 molybdopterin biosynt 96.6 0.007 1.5E-07 54.5 7.5 80 165-245 28-146 (245)
270 TIGR02355 moeB molybdopterin s 96.6 0.0085 1.9E-07 53.8 7.9 80 165-245 20-138 (240)
271 cd05293 LDH_1 A subgroup of L- 96.6 0.0078 1.7E-07 56.2 7.9 107 169-278 3-144 (312)
272 PRK09496 trkA potassium transp 96.6 0.0045 9.8E-08 60.2 6.5 64 170-233 1-78 (453)
273 PRK11579 putative oxidoreducta 96.6 0.016 3.5E-07 54.6 10.0 64 170-233 5-77 (346)
274 PRK00436 argC N-acetyl-gamma-g 96.6 0.0089 1.9E-07 56.5 8.1 92 170-266 3-109 (343)
275 PRK01710 murD UDP-N-acetylmura 96.6 0.015 3.2E-07 57.1 9.8 108 166-274 11-143 (458)
276 COG4007 Predicted dehydrogenas 96.5 0.012 2.6E-07 53.0 8.0 80 181-261 33-122 (340)
277 COG5322 Predicted dehydrogenas 96.5 0.0049 1.1E-07 55.7 5.6 97 164-265 162-270 (351)
278 TIGR02964 xanthine_xdhC xanthi 96.5 0.014 3E-07 52.7 8.6 34 170-203 101-134 (246)
279 PRK08644 thiamine biosynthesis 96.5 0.015 3.2E-07 51.3 8.7 80 165-245 24-141 (212)
280 PRK04207 glyceraldehyde-3-phos 96.5 0.011 2.3E-07 55.9 8.3 62 170-231 2-89 (341)
281 cd01339 LDH-like_MDH L-lactate 96.5 0.0061 1.3E-07 56.4 6.2 57 172-229 1-75 (300)
282 cd05292 LDH_2 A subgroup of L- 96.5 0.0049 1.1E-07 57.4 5.6 61 170-231 1-78 (308)
283 PF02254 TrkA_N: TrkA-N domain 96.4 0.0033 7.1E-08 49.3 3.7 80 172-253 1-93 (116)
284 PF00208 ELFV_dehydrog: Glutam 96.4 0.021 4.6E-07 51.4 9.3 105 165-276 28-165 (244)
285 PF13478 XdhC_C: XdhC Rossmann 96.4 0.0062 1.4E-07 49.9 5.3 85 172-279 1-85 (136)
286 PTZ00079 NADP-specific glutama 96.4 0.026 5.7E-07 55.0 10.4 105 164-276 232-371 (454)
287 COG0169 AroE Shikimate 5-dehyd 96.4 0.008 1.7E-07 55.3 6.4 104 166-273 123-242 (283)
288 PRK06019 phosphoribosylaminoim 96.4 0.0082 1.8E-07 57.3 6.8 58 169-226 2-69 (372)
289 cd00755 YgdL_like Family of ac 96.4 0.045 9.7E-07 48.9 11.0 121 166-289 8-185 (231)
290 PLN02353 probable UDP-glucose 96.4 0.024 5.2E-07 55.9 10.1 99 166-267 321-456 (473)
291 PRK10637 cysG siroheme synthas 96.3 0.0062 1.3E-07 59.8 5.8 89 160-256 5-103 (457)
292 PRK01713 ornithine carbamoyltr 96.3 0.067 1.5E-06 50.4 12.5 91 166-256 153-275 (334)
293 PRK00856 pyrB aspartate carbam 96.3 0.032 6.9E-07 52.0 10.1 98 167-264 154-273 (305)
294 COG1893 ApbA Ketopantoate redu 96.3 0.014 3E-07 54.4 7.6 104 170-276 1-120 (307)
295 PF02629 CoA_binding: CoA bind 96.3 0.017 3.6E-07 44.2 6.9 70 169-239 3-80 (96)
296 PRK06270 homoserine dehydrogen 96.3 0.023 4.9E-07 53.7 9.2 107 170-276 3-146 (341)
297 PF03435 Saccharop_dh: Sacchar 96.3 0.0041 9E-08 59.4 4.2 98 172-275 1-116 (386)
298 PF00056 Ldh_1_N: lactate/mala 96.3 0.002 4.4E-08 53.1 1.7 93 170-264 1-124 (141)
299 PRK07232 bifunctional malic en 96.3 0.1 2.2E-06 54.2 14.2 138 108-279 153-307 (752)
300 PRK08223 hypothetical protein; 96.2 0.024 5.2E-07 52.2 8.5 37 165-201 23-60 (287)
301 PLN02520 bifunctional 3-dehydr 96.2 0.0075 1.6E-07 60.3 5.6 104 166-273 376-491 (529)
302 TIGR00658 orni_carb_tr ornithi 96.2 0.075 1.6E-06 49.5 11.8 90 167-256 146-264 (304)
303 COG0334 GdhA Glutamate dehydro 96.1 0.031 6.8E-07 53.6 9.1 103 164-275 202-329 (411)
304 PRK03659 glutathione-regulated 96.1 0.0071 1.5E-07 61.5 5.1 88 169-258 400-500 (601)
305 PRK05678 succinyl-CoA syntheta 96.1 0.055 1.2E-06 50.0 10.4 108 169-279 8-121 (291)
306 PLN02819 lysine-ketoglutarate 96.1 0.014 3.1E-07 62.3 7.3 64 168-231 568-659 (1042)
307 PRK00779 ornithine carbamoyltr 96.1 0.12 2.6E-06 48.1 12.7 90 167-256 150-265 (304)
308 PRK08328 hypothetical protein; 96.1 0.026 5.6E-07 50.4 7.9 37 165-201 23-60 (231)
309 PRK07688 thiamine/molybdopteri 96.1 0.026 5.6E-07 53.4 8.2 37 165-201 20-57 (339)
310 TIGR02853 spore_dpaA dipicolin 96.0 0.083 1.8E-06 48.7 11.1 103 169-276 1-115 (287)
311 PRK12862 malic enzyme; Reviewe 96.0 0.16 3.4E-06 53.1 14.1 138 108-279 161-315 (763)
312 PF13460 NAD_binding_10: NADH( 96.0 0.0074 1.6E-07 50.9 3.8 62 172-233 1-73 (183)
313 PRK14106 murD UDP-N-acetylmura 96.0 0.052 1.1E-06 52.9 10.2 108 166-273 2-133 (450)
314 cd01486 Apg7 Apg7 is an E1-lik 95.9 0.037 8.1E-07 51.2 8.4 29 171-199 1-30 (307)
315 TIGR03316 ygeW probable carbam 95.9 0.15 3.3E-06 48.5 12.8 91 166-256 167-313 (357)
316 PRK11891 aspartate carbamoyltr 95.9 0.15 3.3E-06 49.5 12.9 91 166-256 238-355 (429)
317 PRK07411 hypothetical protein; 95.9 0.028 6E-07 54.2 7.8 82 165-247 34-154 (390)
318 PRK02472 murD UDP-N-acetylmura 95.9 0.024 5.2E-07 55.2 7.4 107 167-273 3-133 (447)
319 cd01492 Aos1_SUMO Ubiquitin ac 95.9 0.036 7.8E-07 48.2 7.8 37 165-201 17-54 (197)
320 PRK11064 wecC UDP-N-acetyl-D-m 95.9 0.048 1E-06 52.9 9.4 68 165-232 316-398 (415)
321 PRK02102 ornithine carbamoyltr 95.9 0.1 2.3E-06 49.1 11.2 90 167-256 153-273 (331)
322 TIGR01761 thiaz-red thiazoliny 95.8 0.054 1.2E-06 51.2 9.3 104 170-278 4-119 (343)
323 TIGR00670 asp_carb_tr aspartat 95.8 0.074 1.6E-06 49.4 10.0 96 167-263 148-271 (301)
324 PRK02006 murD UDP-N-acetylmura 95.8 0.022 4.7E-07 56.5 7.0 109 167-275 5-148 (498)
325 PRK10669 putative cation:proto 95.8 0.01 2.2E-07 59.7 4.6 83 170-254 418-513 (558)
326 PRK05562 precorrin-2 dehydroge 95.8 0.017 3.6E-07 51.3 5.4 66 164-230 20-95 (223)
327 COG2344 AT-rich DNA-binding pr 95.8 0.011 2.3E-07 50.8 4.0 99 171-271 86-200 (211)
328 PRK06349 homoserine dehydrogen 95.8 0.054 1.2E-06 52.8 9.5 103 170-276 4-125 (426)
329 PRK10206 putative oxidoreducta 95.8 0.059 1.3E-06 50.9 9.5 63 171-233 3-77 (344)
330 PRK14027 quinate/shikimate deh 95.8 0.013 2.8E-07 54.0 4.9 103 167-273 125-245 (283)
331 cd05312 NAD_bind_1_malic_enz N 95.8 0.16 3.6E-06 46.5 11.9 111 164-279 20-166 (279)
332 PRK05597 molybdopterin biosynt 95.8 0.034 7.4E-07 52.9 7.7 37 165-201 24-61 (355)
333 COG1004 Ugd Predicted UDP-gluc 95.8 0.034 7.5E-07 53.0 7.5 84 167-254 308-406 (414)
334 cd01338 MDH_choloroplast_like 95.8 0.095 2.1E-06 49.2 10.5 98 170-269 3-139 (322)
335 PRK09496 trkA potassium transp 95.7 0.024 5.2E-07 55.1 6.7 87 167-255 229-330 (453)
336 PRK05086 malate dehydrogenase; 95.7 0.055 1.2E-06 50.5 8.9 94 170-265 1-125 (312)
337 PRK01390 murD UDP-N-acetylmura 95.7 0.069 1.5E-06 52.3 10.0 108 166-273 6-139 (460)
338 cd01487 E1_ThiF_like E1_ThiF_l 95.7 0.066 1.4E-06 45.6 8.6 74 171-245 1-112 (174)
339 PLN02527 aspartate carbamoyltr 95.7 0.095 2.1E-06 48.8 10.3 92 167-259 149-270 (306)
340 PRK12861 malic enzyme; Reviewe 95.7 0.17 3.7E-06 52.6 13.0 120 108-261 157-293 (764)
341 PRK03515 ornithine carbamoyltr 95.7 0.096 2.1E-06 49.4 10.3 91 166-256 153-275 (336)
342 PRK05600 thiamine biosynthesis 95.7 0.036 7.8E-07 53.0 7.5 79 165-244 37-154 (370)
343 PRK08762 molybdopterin biosynt 95.7 0.026 5.6E-07 54.0 6.5 37 165-201 131-168 (376)
344 PRK07878 molybdopterin biosynt 95.6 0.043 9.4E-07 52.8 7.9 80 165-245 38-156 (392)
345 PRK03562 glutathione-regulated 95.6 0.016 3.5E-07 59.1 5.1 84 169-254 400-496 (621)
346 PRK02255 putrescine carbamoylt 95.6 0.079 1.7E-06 50.0 9.3 97 166-262 151-281 (338)
347 PRK03369 murD UDP-N-acetylmura 95.6 0.028 6.2E-07 55.6 6.6 107 167-273 10-142 (488)
348 cd00762 NAD_bind_malic_enz NAD 95.5 0.17 3.7E-06 45.7 10.8 113 164-280 20-168 (254)
349 cd00300 LDH_like L-lactate deh 95.5 0.039 8.4E-07 51.2 6.8 90 172-264 1-121 (300)
350 PLN02948 phosphoribosylaminoim 95.5 0.041 8.8E-07 55.7 7.4 65 166-230 19-93 (577)
351 cd01483 E1_enzyme_family Super 95.5 0.16 3.4E-06 41.4 9.7 31 171-201 1-32 (143)
352 PRK07877 hypothetical protein; 95.5 0.068 1.5E-06 55.3 9.0 79 165-245 103-220 (722)
353 PLN02342 ornithine carbamoyltr 95.4 0.33 7.2E-06 46.0 12.9 90 167-256 192-307 (348)
354 cd05188 MDR Medium chain reduc 95.4 0.21 4.5E-06 44.0 11.1 112 168-284 134-260 (271)
355 PRK11863 N-acetyl-gamma-glutam 95.4 0.078 1.7E-06 49.5 8.5 77 170-256 3-81 (313)
356 PLN02602 lactate dehydrogenase 95.4 0.037 7.9E-07 52.5 6.3 95 170-267 38-163 (350)
357 PRK08300 acetaldehyde dehydrog 95.4 0.062 1.4E-06 49.8 7.6 94 169-267 4-119 (302)
358 PLN00106 malate dehydrogenase 95.3 0.051 1.1E-06 51.0 7.0 92 168-259 17-138 (323)
359 PRK00141 murD UDP-N-acetylmura 95.3 0.029 6.2E-07 55.4 5.6 109 166-274 12-147 (473)
360 PRK04690 murD UDP-N-acetylmura 95.3 0.039 8.5E-07 54.3 6.5 107 167-273 6-140 (468)
361 PRK07806 short chain dehydroge 95.3 0.087 1.9E-06 46.5 8.2 36 167-202 4-40 (248)
362 TIGR01161 purK phosphoribosyla 95.2 0.041 8.8E-07 52.0 6.2 56 171-226 1-66 (352)
363 PRK00421 murC UDP-N-acetylmura 95.2 0.037 8.1E-07 54.2 6.2 108 167-274 5-133 (461)
364 COG0673 MviM Predicted dehydro 95.2 0.038 8.2E-07 51.4 5.9 66 170-235 4-82 (342)
365 PRK15182 Vi polysaccharide bio 95.2 0.13 2.7E-06 50.2 9.6 95 164-261 309-417 (425)
366 PRK06392 homoserine dehydrogen 95.2 0.12 2.6E-06 48.6 9.2 105 170-275 1-136 (326)
367 CHL00194 ycf39 Ycf39; Provisio 95.2 0.038 8.2E-07 51.2 5.6 60 170-229 1-73 (317)
368 PRK05442 malate dehydrogenase; 95.1 0.22 4.8E-06 46.8 10.7 98 170-269 5-141 (326)
369 cd00704 MDH Malate dehydrogena 95.1 0.3 6.4E-06 45.9 11.3 97 171-269 2-137 (323)
370 cd05290 LDH_3 A subgroup of L- 95.0 0.042 9.2E-07 51.2 5.6 60 171-230 1-78 (307)
371 cd05294 LDH-like_MDH_nadp A la 95.0 0.17 3.8E-06 47.1 9.7 106 170-278 1-145 (309)
372 PRK05786 fabG 3-ketoacyl-(acyl 95.0 0.071 1.5E-06 46.6 6.8 37 167-203 3-40 (238)
373 PRK13814 pyrB aspartate carbam 95.0 0.12 2.7E-06 48.1 8.6 90 167-256 155-264 (310)
374 PTZ00325 malate dehydrogenase; 94.9 0.079 1.7E-06 49.7 7.0 64 167-230 6-86 (321)
375 PF03447 NAD_binding_3: Homose 94.9 0.02 4.4E-07 45.1 2.7 95 176-275 1-112 (117)
376 TIGR03649 ergot_EASG ergot alk 94.9 0.13 2.9E-06 46.5 8.5 61 171-231 1-78 (285)
377 COG3288 PntA NAD/NADP transhyd 94.9 0.047 1E-06 50.4 5.3 95 164-259 159-286 (356)
378 PRK04148 hypothetical protein; 94.9 0.06 1.3E-06 44.0 5.3 69 168-237 16-94 (134)
379 TIGR01772 MDH_euk_gproteo mala 94.9 0.12 2.6E-06 48.3 8.1 91 171-263 1-121 (312)
380 PRK04284 ornithine carbamoyltr 94.9 0.33 7.1E-06 45.8 11.0 90 167-256 153-274 (332)
381 PRK14804 ornithine carbamoyltr 94.9 0.22 4.8E-06 46.5 9.8 62 166-227 150-225 (311)
382 PF00899 ThiF: ThiF family; I 94.9 0.029 6.2E-07 45.5 3.5 33 169-201 2-35 (135)
383 TIGR03215 ac_ald_DH_ac acetald 94.8 0.13 2.9E-06 47.4 8.1 82 170-256 2-95 (285)
384 PRK01368 murD UDP-N-acetylmura 94.8 0.053 1.1E-06 53.3 5.9 105 168-273 5-129 (454)
385 PF04016 DUF364: Domain of unk 94.8 0.09 2E-06 43.6 6.4 84 167-256 9-95 (147)
386 PRK04308 murD UDP-N-acetylmura 94.8 0.075 1.6E-06 51.8 6.8 108 167-274 3-136 (445)
387 TIGR01019 sucCoAalpha succinyl 94.8 0.33 7.1E-06 44.8 10.6 107 169-278 6-118 (286)
388 PRK09880 L-idonate 5-dehydroge 94.8 0.11 2.4E-06 48.6 7.6 85 168-257 169-267 (343)
389 PRK15076 alpha-galactosidase; 94.7 0.034 7.4E-07 54.2 4.2 109 170-279 2-169 (431)
390 PRK12550 shikimate 5-dehydroge 94.7 0.05 1.1E-06 49.8 4.9 101 169-273 122-232 (272)
391 TIGR01202 bchC 2-desacetyl-2-h 94.7 0.093 2E-06 48.5 6.8 84 168-256 144-231 (308)
392 PF03949 Malic_M: Malic enzyme 94.6 0.33 7.1E-06 44.0 9.8 93 164-260 20-145 (255)
393 PRK14851 hypothetical protein; 94.6 0.12 2.6E-06 53.3 7.9 36 165-200 39-75 (679)
394 cd01491 Ube1_repeat1 Ubiquitin 94.5 0.27 5.8E-06 45.4 9.3 38 165-202 15-53 (286)
395 PLN00112 malate dehydrogenase 94.5 0.28 6.1E-06 48.0 9.8 100 171-272 102-240 (444)
396 PF00070 Pyr_redox: Pyridine n 94.5 0.079 1.7E-06 38.7 4.7 35 171-205 1-35 (80)
397 TIGR03366 HpnZ_proposed putati 94.4 0.13 2.8E-06 46.7 7.1 85 168-257 120-219 (280)
398 cd08230 glucose_DH Glucose deh 94.4 0.097 2.1E-06 49.2 6.4 85 168-257 172-270 (355)
399 PF05368 NmrA: NmrA-like famil 94.4 0.035 7.6E-07 48.9 3.2 73 172-244 1-93 (233)
400 COG2910 Putative NADH-flavin r 94.4 0.23 5E-06 42.8 7.9 62 170-231 1-73 (211)
401 PRK03803 murD UDP-N-acetylmura 94.3 0.11 2.3E-06 50.8 6.7 105 169-273 6-133 (448)
402 TIGR01759 MalateDH-SF1 malate 94.3 0.14 3.1E-06 48.0 7.2 95 171-267 5-138 (323)
403 KOG4230 C1-tetrahydrofolate sy 94.3 0.14 3.1E-06 50.9 7.2 83 164-262 157-240 (935)
404 PLN02662 cinnamyl-alcohol dehy 94.2 0.16 3.4E-06 46.8 7.3 61 169-229 4-85 (322)
405 TIGR01851 argC_other N-acetyl- 94.2 0.27 5.8E-06 45.9 8.7 76 171-256 3-80 (310)
406 PRK10537 voltage-gated potassi 94.2 0.14 3E-06 49.5 6.9 83 169-253 240-333 (393)
407 PLN02214 cinnamoyl-CoA reducta 94.1 0.16 3.4E-06 47.7 7.2 64 166-229 7-90 (342)
408 PRK07523 gluconate 5-dehydroge 94.1 0.14 3E-06 45.4 6.5 37 166-202 7-44 (255)
409 PRK12562 ornithine carbamoyltr 94.1 0.65 1.4E-05 43.8 11.2 91 166-256 153-275 (334)
410 PRK14874 aspartate-semialdehyd 94.1 0.22 4.7E-06 46.9 8.0 84 169-257 1-95 (334)
411 PLN02586 probable cinnamyl alc 94.1 0.28 6.1E-06 46.4 8.9 85 168-257 183-279 (360)
412 TIGR01532 E4PD_g-proteo D-eryt 94.1 0.12 2.5E-06 48.6 6.1 28 171-198 1-32 (325)
413 cd01489 Uba2_SUMO Ubiquitin ac 94.0 0.39 8.4E-06 44.9 9.4 83 171-257 1-123 (312)
414 cd01488 Uba3_RUB Ubiquitin act 94.0 0.3 6.5E-06 45.2 8.6 88 171-259 1-131 (291)
415 PRK08040 putative semialdehyde 94.0 0.25 5.4E-06 46.6 8.2 83 168-256 3-97 (336)
416 PF05222 AlaDh_PNT_N: Alanine 94.0 0.38 8.2E-06 39.3 8.3 93 183-285 18-119 (136)
417 PRK01438 murD UDP-N-acetylmura 94.0 0.086 1.9E-06 51.9 5.2 110 164-273 11-147 (480)
418 PLN03209 translocon at the inn 93.9 0.086 1.9E-06 53.0 5.1 64 167-230 78-169 (576)
419 PRK08374 homoserine dehydrogen 93.9 0.42 9.1E-06 45.1 9.6 114 170-288 3-156 (336)
420 PRK12937 short chain dehydroge 93.9 0.32 6.9E-06 42.6 8.3 35 167-201 3-38 (245)
421 PRK08664 aspartate-semialdehyd 93.8 0.28 6E-06 46.5 8.2 80 170-256 4-107 (349)
422 cd01336 MDH_cytoplasmic_cytoso 93.8 0.18 3.8E-06 47.4 6.8 93 171-265 4-135 (325)
423 PLN02657 3,8-divinyl protochlo 93.8 0.15 3.2E-06 49.0 6.4 39 164-202 55-94 (390)
424 PRK06728 aspartate-semialdehyd 93.7 0.33 7.2E-06 46.0 8.5 81 169-256 5-99 (347)
425 PRK15181 Vi polysaccharide bio 93.7 0.16 3.4E-06 47.8 6.4 35 167-201 13-48 (348)
426 PRK08192 aspartate carbamoyltr 93.7 0.4 8.6E-06 45.3 8.9 93 164-256 154-274 (338)
427 PRK05865 hypothetical protein; 93.6 0.43 9.4E-06 50.4 9.9 90 170-259 1-105 (854)
428 PRK07533 enoyl-(acyl carrier p 93.6 0.46 1E-05 42.5 9.0 37 166-202 7-46 (258)
429 COG0281 SfcA Malic enzyme [Ene 93.6 0.39 8.4E-06 46.3 8.7 138 107-279 166-324 (432)
430 cd01337 MDH_glyoxysomal_mitoch 93.6 0.2 4.4E-06 46.7 6.7 92 170-263 1-122 (310)
431 TIGR03466 HpnA hopanoid-associ 93.6 0.16 3.4E-06 46.7 6.0 60 170-229 1-73 (328)
432 cd08237 ribitol-5-phosphate_DH 93.5 0.3 6.6E-06 45.7 7.9 87 168-256 163-256 (341)
433 PLN02695 GDP-D-mannose-3',5'-e 93.5 0.19 4.2E-06 47.8 6.5 61 168-228 20-93 (370)
434 COG0039 Mdh Malate/lactate deh 93.5 0.2 4.4E-06 46.7 6.5 63 170-232 1-83 (313)
435 TIGR01296 asd_B aspartate-semi 93.4 0.29 6.2E-06 46.3 7.5 81 171-256 1-92 (339)
436 cd01485 E1-1_like Ubiquitin ac 93.4 0.095 2.1E-06 45.6 4.0 36 165-200 15-51 (198)
437 PLN02383 aspartate semialdehyd 93.4 0.44 9.6E-06 45.1 8.7 84 168-256 6-100 (344)
438 TIGR01087 murD UDP-N-acetylmur 93.4 0.61 1.3E-05 45.2 10.0 103 171-274 1-128 (433)
439 PLN00141 Tic62-NAD(P)-related 93.4 0.16 3.4E-06 45.4 5.4 66 165-230 13-95 (251)
440 PRK06701 short chain dehydroge 93.4 0.29 6.3E-06 44.8 7.3 38 165-202 42-80 (290)
441 PLN02896 cinnamyl-alcohol dehy 93.3 0.16 3.5E-06 47.7 5.8 66 164-229 5-88 (353)
442 PLN02989 cinnamyl-alcohol dehy 93.3 0.29 6.2E-06 45.2 7.4 61 169-229 5-86 (325)
443 PF04321 RmlD_sub_bind: RmlD s 93.2 0.13 2.9E-06 47.1 4.9 59 170-231 1-62 (286)
444 PRK07231 fabG 3-ketoacyl-(acyl 93.2 0.28 6.1E-06 43.1 6.8 38 166-203 2-40 (251)
445 TIGR02822 adh_fam_2 zinc-bindi 93.2 0.25 5.3E-06 46.1 6.7 84 169-257 166-255 (329)
446 TIGR01757 Malate-DH_plant mala 93.2 0.7 1.5E-05 44.5 9.8 100 171-272 46-184 (387)
447 PRK13529 malate dehydrogenase; 93.2 2.5 5.5E-05 42.5 13.8 164 83-280 238-444 (563)
448 TIGR01214 rmlD dTDP-4-dehydror 93.1 0.22 4.7E-06 45.0 6.1 57 171-230 1-60 (287)
449 PLN02427 UDP-apiose/xylose syn 93.1 0.21 4.6E-06 47.5 6.2 65 164-228 9-94 (386)
450 PRK08265 short chain dehydroge 93.1 0.43 9.3E-06 42.7 7.9 38 166-203 3-41 (261)
451 PLN02819 lysine-ketoglutarate 93.1 0.11 2.3E-06 55.9 4.4 88 167-256 201-338 (1042)
452 PRK04523 N-acetylornithine car 93.0 0.82 1.8E-05 43.2 9.9 96 167-263 166-304 (335)
453 COG1063 Tdh Threonine dehydrog 93.0 0.29 6.3E-06 46.3 7.0 83 171-258 171-271 (350)
454 PRK06196 oxidoreductase; Provi 93.0 0.25 5.5E-06 45.6 6.4 39 165-203 22-61 (315)
455 TIGR01758 MDH_euk_cyt malate d 93.0 0.24 5.2E-06 46.5 6.3 95 171-267 1-134 (324)
456 PRK14852 hypothetical protein; 92.9 0.34 7.3E-06 51.6 7.8 35 166-200 329-364 (989)
457 PRK06523 short chain dehydroge 92.9 0.87 1.9E-05 40.4 9.6 39 165-203 5-44 (260)
458 PRK06398 aldose dehydrogenase; 92.9 0.55 1.2E-05 41.9 8.3 38 166-203 3-41 (258)
459 PRK15057 UDP-glucose 6-dehydro 92.9 0.37 8E-06 46.4 7.5 62 167-228 294-367 (388)
460 TIGR01771 L-LDH-NAD L-lactate 92.8 0.16 3.4E-06 47.2 4.7 90 174-265 1-120 (299)
461 PRK07370 enoyl-(acyl carrier p 92.8 0.28 6E-06 44.0 6.2 36 166-201 3-41 (258)
462 PLN02178 cinnamyl-alcohol dehy 92.8 0.5 1.1E-05 45.0 8.3 84 168-256 178-273 (375)
463 PRK08324 short chain dehydroge 92.7 0.23 5.1E-06 51.2 6.2 39 165-203 418-457 (681)
464 cd05283 CAD1 Cinnamyl alcohol 92.7 0.49 1.1E-05 43.9 7.9 84 169-257 170-264 (337)
465 COG1832 Predicted CoA-binding 92.6 1.7 3.6E-05 35.6 9.7 101 167-273 14-120 (140)
466 PRK07825 short chain dehydroge 92.6 0.37 8E-06 43.2 6.7 36 167-202 3-39 (273)
467 PRK13376 pyrB bifunctional asp 92.5 0.62 1.3E-05 46.5 8.6 91 166-256 171-293 (525)
468 TIGR01142 purT phosphoribosylg 92.5 0.29 6.3E-06 46.5 6.2 57 171-227 1-69 (380)
469 TIGR00978 asd_EA aspartate-sem 92.4 0.64 1.4E-05 43.9 8.4 82 170-256 1-104 (341)
470 PRK06153 hypothetical protein; 92.4 0.16 3.4E-06 48.7 4.1 92 166-261 173-303 (393)
471 cd08239 THR_DH_like L-threonin 92.3 0.52 1.1E-05 43.7 7.6 85 169-258 164-264 (339)
472 COG2227 UbiG 2-polyprenyl-3-me 92.3 0.49 1.1E-05 42.4 6.9 82 167-254 58-159 (243)
473 TIGR02622 CDP_4_6_dhtase CDP-g 92.3 0.35 7.7E-06 45.3 6.5 37 167-203 2-39 (349)
474 PTZ00317 NADP-dependent malic 92.3 3.2 6.9E-05 41.7 13.2 141 107-280 264-443 (559)
475 COG0078 ArgF Ornithine carbamo 92.3 1.3 2.7E-05 41.1 9.6 92 167-258 151-275 (310)
476 PRK03806 murD UDP-N-acetylmura 92.2 0.25 5.3E-06 48.1 5.4 105 167-272 4-129 (438)
477 TIGR01777 yfcH conserved hypot 92.2 0.35 7.6E-06 43.5 6.1 57 173-229 2-66 (292)
478 PLN03129 NADP-dependent malic 92.2 2.7 5.9E-05 42.4 12.6 138 108-279 289-462 (581)
479 TIGR01832 kduD 2-deoxy-D-gluco 92.2 0.32 6.8E-06 42.8 5.7 36 167-202 3-39 (248)
480 TIGR03201 dearomat_had 6-hydro 92.1 0.43 9.4E-06 44.7 6.9 84 169-257 167-273 (349)
481 PRK06057 short chain dehydroge 92.1 0.56 1.2E-05 41.6 7.3 36 167-202 5-41 (255)
482 TIGR03589 PseB UDP-N-acetylglu 92.1 0.33 7.1E-06 45.2 6.0 62 167-228 2-82 (324)
483 PRK07424 bifunctional sterol d 92.0 0.25 5.4E-06 47.9 5.2 64 165-228 174-253 (406)
484 PLN02986 cinnamyl-alcohol dehy 92.0 0.57 1.2E-05 43.2 7.4 62 168-229 4-86 (322)
485 PRK08628 short chain dehydroge 92.0 0.34 7.5E-06 42.9 5.8 38 166-203 4-42 (258)
486 KOG0022 Alcohol dehydrogenase, 92.0 0.83 1.8E-05 42.6 8.2 37 168-204 192-229 (375)
487 PF00044 Gp_dh_N: Glyceraldehy 92.0 0.17 3.8E-06 42.2 3.5 29 171-199 2-31 (151)
488 PLN02272 glyceraldehyde-3-phos 92.0 0.2 4.4E-06 48.5 4.4 31 170-200 86-118 (421)
489 PRK06079 enoyl-(acyl carrier p 92.0 0.49 1.1E-05 42.1 6.7 35 167-201 5-42 (252)
490 PRK05717 oxidoreductase; Valid 92.0 0.41 8.8E-06 42.5 6.2 37 166-202 7-44 (255)
491 PRK06182 short chain dehydroge 92.0 2.1 4.5E-05 38.3 10.9 36 168-203 2-38 (273)
492 PRK08862 short chain dehydroge 91.9 0.23 5E-06 43.8 4.5 38 166-203 2-40 (227)
493 cd01490 Ube1_repeat2 Ubiquitin 91.9 0.57 1.2E-05 45.8 7.5 31 171-201 1-37 (435)
494 cd08245 CAD Cinnamyl alcohol d 91.9 0.86 1.9E-05 41.9 8.5 83 169-256 163-256 (330)
495 KOG0399 Glutamate synthase [Am 91.9 0.51 1.1E-05 50.8 7.4 66 166-231 1782-1881(2142)
496 PLN02514 cinnamyl-alcohol dehy 91.9 0.5 1.1E-05 44.6 7.0 85 168-257 180-276 (357)
497 PRK07890 short chain dehydroge 91.9 0.91 2E-05 40.1 8.4 36 167-202 3-39 (258)
498 PRK07200 aspartate/ornithine c 91.9 0.62 1.3E-05 45.0 7.6 91 166-256 184-330 (395)
499 PRK12828 short chain dehydroge 91.9 0.86 1.9E-05 39.5 8.0 38 166-203 4-42 (239)
500 PRK15116 sulfur acceptor prote 91.7 0.24 5.3E-06 45.2 4.5 37 165-201 26-63 (268)
No 1
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.8e-64 Score=468.46 Aligned_cols=274 Identities=34% Similarity=0.522 Sum_probs=239.3
Q ss_pred CCCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCC
Q 022233 15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSA 94 (300)
Q Consensus 15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~ 94 (300)
||++++...++ .++..+. +.+.|++..+.....+.. .+.+..+++|++++....++++++++++|+||+|+..|+
T Consensus 1 mk~~~~~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~ 75 (324)
T COG1052 1 MKIVVLSTRKL--PPEVLER--LKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSA 75 (324)
T ss_pred CCcEEEecCcC--CHHHHHH--hhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEecc
Confidence 57888888887 4666666 788888765443312222 445556899999998788999999999999999999999
Q ss_pred CCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEE
Q 022233 95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGI 174 (300)
Q Consensus 95 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgI 174 (300)
||||||+++|+++||.|+|+|++++++||||+++|||++.|++.+.++.+|+|.|.... ...+ .+ |.+++|||+||
T Consensus 76 G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~-~~~~-~~--~~~l~gktvGI 151 (324)
T COG1052 76 GYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSG-GPDP-LL--GFDLRGKTLGI 151 (324)
T ss_pred ccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccC-Cccc-cc--ccCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999998431 1111 33 78999999999
Q ss_pred EecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233 175 VGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250 (300)
Q Consensus 175 iG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga 250 (300)
||+|+||+++|+++++|||+|.||+|++.+. .++.+. +++|++++||+|++|||++++|+|+||++.|++||+|+
T Consensus 152 iG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga 230 (324)
T COG1052 152 IGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGA 230 (324)
T ss_pred ECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCe
Confidence 9999999999999999999999999987421 234444 49999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC-CCCCCCCCC
Q 022233 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV-PKELXXXXX 298 (300)
Q Consensus 251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~-~~~L~~~~n 298 (300)
+|||+|||++||++||++||++|+|+||||||||.||.+ +++|+.++|
T Consensus 231 ~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~ 279 (324)
T COG1052 231 ILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDN 279 (324)
T ss_pred EEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccC
Confidence 999999999999999999999999999999999999986 568888777
No 2
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=3.8e-64 Score=467.94 Aligned_cols=274 Identities=30% Similarity=0.453 Sum_probs=236.4
Q ss_pred CCCeEEEECCCCCCccccchhhhcccCeEEEecCC-CCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233 15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWES-PLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS 93 (300)
Q Consensus 15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~ 93 (300)
|+||||++.+. .++..+. |++.+++..+... +.+.++ +.+.++++|+++++ ..++++++++++|+||+|++.|
T Consensus 1 ~~~~vl~~~~~--~~~~~~~--l~~~~~v~~~~~~~~~~~~~-~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g 74 (323)
T PRK15409 1 MKPSVILYKAL--PDDLLQR--LEEHFTVTQVANLSPETVEQ-HAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTIS 74 (323)
T ss_pred CCceEEEeCCC--CHHHHHH--HHhcCcEEEcCCCCCCCHHH-HHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECc
Confidence 67899999986 4555555 7777776543221 223334 34556899999875 4589999999999999999999
Q ss_pred CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233 94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG 173 (300)
Q Consensus 94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg 173 (300)
+|+|+||+++|+++||.|+|+|++++++||||++++||++.|+++.+++.+++|+|.... +.. .. |.+|+|+|||
T Consensus 75 ~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~--~~~-~~--g~~L~gktvG 149 (323)
T PRK15409 75 VGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASI--GPD-WF--GTDVHHKTLG 149 (323)
T ss_pred eecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccC--ccc-cc--cCCCCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999997211 111 12 7899999999
Q ss_pred EEecChhHHHHHHHHH-hCCCEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCC
Q 022233 174 IVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK 248 (300)
Q Consensus 174 IiG~G~IG~~~A~~l~-~~g~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ 248 (300)
|||+|+||+.+|++++ +|||+|.+|++...+.. +. .+.++++++++||+|++|+|+|++|+++|+++.|++||+
T Consensus 150 IiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ 228 (323)
T PRK15409 150 IVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNA-RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKS 228 (323)
T ss_pred EEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCc-EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCC
Confidence 9999999999999998 99999999998753321 22 346999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233 249 EGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX 300 (300)
Q Consensus 249 ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~ 300 (300)
|++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||+
T Consensus 229 ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvi 281 (323)
T PRK15409 229 SAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVV 281 (323)
T ss_pred CeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEE
Confidence 999999999999999999999999999999999999999874 5899999985
No 3
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-64 Score=465.72 Aligned_cols=272 Identities=31% Similarity=0.415 Sum_probs=233.9
Q ss_pred CCCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCC
Q 022233 15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSA 94 (300)
Q Consensus 15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~ 94 (300)
++++++...+. .+...+. +... ..+.........++.+.+.++++|++++ +.+++++++++.+|+||+|++.|+
T Consensus 2 ~~~~vl~~~~~--~~~~~~~--l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~ 75 (324)
T COG0111 2 MMIKVLVTDPL--APDALEE--LLAA-YDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGA 75 (324)
T ss_pred CcceeeccCcc--CHHHHHH--HHhc-cccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccc
Confidence 56778888776 4554444 4433 2111111121223334455689999998 788999999999999999999999
Q ss_pred CCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEE
Q 022233 95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGI 174 (300)
Q Consensus 95 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgI 174 (300)
|+||||+++++++||.|+|+|+.|+.+||||++++||++.|+++.+++.+++|.|.+ ..+ . |.+|+||||||
T Consensus 76 Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~----~~~--~--g~el~gkTvGI 147 (324)
T COG0111 76 GVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR----KAF--R--GTELAGKTVGI 147 (324)
T ss_pred cccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc----ccc--c--cccccCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999983 122 2 67999999999
Q ss_pred EecChhHHHHHHHHHhCCCEEEEECCCCCCC-C---CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233 175 VGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-V---SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250 (300)
Q Consensus 175 iG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-~---~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga 250 (300)
||+|+||+.+|+++++|||+|++||+..... . +.....+|++++++||||++|+|+|++|++||+++.|++||+|+
T Consensus 148 iG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~ga 227 (324)
T COG0111 148 IGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGA 227 (324)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCe
Confidence 9999999999999999999999999944332 2 34456789999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCC-CCCCCCCCC
Q 022233 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK-ELXXXXXXX 300 (300)
Q Consensus 251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~-~L~~~~nv~ 300 (300)
+|||+|||++||++||++||++|+|+||+||||++||++++ |||++|||+
T Consensus 228 ilIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~ 278 (324)
T COG0111 228 ILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVI 278 (324)
T ss_pred EEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeE
Confidence 99999999999999999999999999999999999999875 999999985
No 4
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-62 Score=453.48 Aligned_cols=273 Identities=27% Similarity=0.378 Sum_probs=229.9
Q ss_pred eEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCC
Q 022233 18 RVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLN 97 (300)
Q Consensus 18 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d 97 (300)
||+++.+..+.+...+. +++.+++..+. . .+.+++ .+.++++|+++++ ..++++++++.+|+||+|++.|+|+|
T Consensus 2 ki~~~~~~~~~~~~~~~--l~~~~~~~~~~-~-~~~~~~-~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d 75 (311)
T PRK08410 2 KIVILDAKTLGDKDLSV--FEEFGDFQIYP-T-TSPEEV-IERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTN 75 (311)
T ss_pred eEEEEecCCCChhhHHH--HhhCceEEEeC-C-CCHHHH-HHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccc
Confidence 47777764334444444 66666654432 2 123344 4556899998875 56899999999999999999999999
Q ss_pred CCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCcccc-CcccccCCCEEEEEe
Q 022233 98 HVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSL-GIGSKLGGKRVGIVG 176 (300)
Q Consensus 98 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~-~~g~~l~g~~vgIiG 176 (300)
+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|... ..+... ..+++|.||||||||
T Consensus 76 ~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~---~~~~~~~~~~~~L~gktvGIiG 152 (311)
T PRK08410 76 NVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSES---PIFTHISRPLGEIKGKKWGIIG 152 (311)
T ss_pred cccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcC---CCccccCccccccCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999732 111000 014689999999999
Q ss_pred cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233 177 LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 177 ~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~s 256 (300)
+|+||+.+|+++++|||+|++|+++...........++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|
T Consensus 153 ~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~a 232 (311)
T PRK08410 153 LGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVG 232 (311)
T ss_pred CCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECC
Confidence 99999999999999999999999975432222235689999999999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCC---CCCC
Q 022233 257 RGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXX---XXXX 300 (300)
Q Consensus 257 rg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~---~nv~ 300 (300)
||++||++||++||++|+|+ |+||||++||+++ +|||++ |||+
T Consensus 233 RG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~Nvi 279 (311)
T PRK08410 233 RGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLL 279 (311)
T ss_pred CccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEE
Confidence 99999999999999999999 9999999999875 489987 8985
No 5
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1.5e-61 Score=452.84 Aligned_cols=277 Identities=32% Similarity=0.490 Sum_probs=237.5
Q ss_pred CCCeEEEECCCCCCccccchhhhcccCeEEEecCC-CCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233 15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWES-PLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS 93 (300)
Q Consensus 15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~ 93 (300)
|||||+++.+. .+...+. +++.+++..+... ..+.++ +.+.++++|+++++...++++++++++|+||||+++|
T Consensus 1 ~~~kil~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~ 75 (333)
T PRK13243 1 MKPKVFITREI--PENGIEM--LEEHFEVEVWEDEREIPREV-LLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYA 75 (333)
T ss_pred CCceEEEECCC--CHHHHHH--HhcCceEEEecCCCCCCHHH-HHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecC
Confidence 67899999875 4455545 7766665443221 123333 4455689999998766689999999999999999999
Q ss_pred CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCccc--CCCccccCcccccCCCE
Q 022233 94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA--EGDCYSLGIGSKLGGKR 171 (300)
Q Consensus 94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~--~~~~~~~~~g~~l~g~~ 171 (300)
+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|..... ...+ .. |.+|+|++
T Consensus 76 ~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~-~~--g~~L~gkt 152 (333)
T PRK13243 76 VGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLM-FL--GYDVYGKT 152 (333)
T ss_pred ccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccccc-cc--ccCCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999973210 0001 12 78999999
Q ss_pred EEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG 247 (300)
Q Consensus 172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk 247 (300)
|||||+|+||+.+|++|++|||+|.+|+++..... +. ...++++++++||+|++|+|++++|+++|+++.|+.||
T Consensus 153 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk 231 (333)
T PRK13243 153 IGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGA-EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMK 231 (333)
T ss_pred EEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCC-EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCC
Confidence 99999999999999999999999999999764321 22 24689999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233 248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX 300 (300)
Q Consensus 248 ~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~ 300 (300)
+|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||+
T Consensus 232 ~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvi 284 (333)
T PRK13243 232 PTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVV 284 (333)
T ss_pred CCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEE
Confidence 99999999999999999999999999999999999999999877999999985
No 6
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-60 Score=440.53 Aligned_cols=274 Identities=26% Similarity=0.385 Sum_probs=226.2
Q ss_pred eEEEECCCCC--CccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCC
Q 022233 18 RVLLFKPPPD--FHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAG 95 (300)
Q Consensus 18 ~vl~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G 95 (300)
||+++....+ .+...+. +++.+..+..... .+.++ +.+.++++|+++++ ..++++++++++|+||+|++.|+|
T Consensus 2 ~i~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~-~~~~~-~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G 76 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSP--LEQAFDELQLHDA-TTPEQ-VAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATG 76 (317)
T ss_pred eEEEEccccCCccccchhH--HHhhCCeEEEecC-CCHHH-HHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCcc
Confidence 3777765321 1222333 5544422222222 12233 44556899988875 568999999999999999999999
Q ss_pred CCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEE
Q 022233 96 LNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIV 175 (300)
Q Consensus 96 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIi 175 (300)
+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|......... .. .+.+|.|||||||
T Consensus 77 ~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~-~~-~~~~l~gktvgIi 154 (317)
T PRK06487 77 TNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLL-DF-PIVELEGKTLGLL 154 (317)
T ss_pred ccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccc-cC-cccccCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999732100000 00 1468999999999
Q ss_pred ecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEc
Q 022233 176 GLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINI 255 (300)
Q Consensus 176 G~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~ 255 (300)
|+|+||+.+|+++++|||+|++|++..... . ....+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+
T Consensus 155 G~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~ 232 (317)
T PRK06487 155 GHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINT 232 (317)
T ss_pred CCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEEC
Confidence 999999999999999999999999864321 1 22458999999999999999999999999999999999999999999
Q ss_pred CCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCC--CCCCC
Q 022233 256 GRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXX--XXXXX 300 (300)
Q Consensus 256 srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~--~~nv~ 300 (300)
|||++||++||++||++|+|+||+||||++||+++ +|||. +|||+
T Consensus 233 aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvi 280 (317)
T PRK06487 233 ARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLI 280 (317)
T ss_pred CCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEE
Confidence 99999999999999999999999999999999876 48995 89985
No 7
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-60 Score=438.01 Aligned_cols=239 Identities=26% Similarity=0.417 Sum_probs=212.0
Q ss_pred HHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhc
Q 022233 57 LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRN 136 (300)
Q Consensus 57 l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~ 136 (300)
+.+.++++|++++. ..++++++++++|+||+|++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||++.|+
T Consensus 38 ~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~ 116 (314)
T PRK06932 38 TIERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHS 116 (314)
T ss_pred HHHHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhC
Confidence 34456799988874 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCCcccCCCcccc-CcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHH
Q 022233 137 ISASDRFVKQWLRPRQAAEGDCYSL-GIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC 215 (300)
Q Consensus 137 ~~~~~~~~~~g~w~~~~~~~~~~~~-~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~ 215 (300)
+..+++.+++|.|... ..+... ..+.+|.|+||||||+|.||+.+|+++++|||+|++|++....... ..+.+++
T Consensus 117 ~~~~~~~~~~~~W~~~---~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~ 192 (314)
T PRK06932 117 LMGWYRDQLSDRWATC---KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFE 192 (314)
T ss_pred hHHHHHHHHcCCCCcC---ccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHH
Confidence 9999999999999732 111000 0146899999999999999999999999999999999976432211 1246899
Q ss_pred HHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCC
Q 022233 216 ELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELX 294 (300)
Q Consensus 216 e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~ 294 (300)
|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||
T Consensus 193 ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~ 272 (314)
T PRK06932 193 EVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLI 272 (314)
T ss_pred HHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875 5898
Q ss_pred ----CCCCCC
Q 022233 295 ----XXXXXX 300 (300)
Q Consensus 295 ----~~~nv~ 300 (300)
++|||+
T Consensus 273 ~~~~~~pnvi 282 (314)
T PRK06932 273 QAAKRLPNLL 282 (314)
T ss_pred HhhcCCCCEE
Confidence 599985
No 8
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-60 Score=452.24 Aligned_cols=271 Identities=23% Similarity=0.316 Sum_probs=234.0
Q ss_pred CCeEEEECCCCCCccccchhhhccc-C-eEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233 16 LPRVLLFKPPPDFHLFGDECFSSNK-F-KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS 93 (300)
Q Consensus 16 kp~vl~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~ 93 (300)
++||+++++. .+...+. +++. + ++.. .....+.++ +.+.++++|++++++..++++++++++|+||+|++.|
T Consensus 10 ~~~ili~~~~--~~~~~~~--l~~~~~~~v~~-~~~~~~~~~-~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~ 83 (409)
T PRK11790 10 KIKFLLLEGV--HQSAVEV--LRAAGYTNIEY-HKGALDEEE-LIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFC 83 (409)
T ss_pred CeEEEEECCC--CHHHHHH--HHhcCCceEEE-CCCCCCHHH-HHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECc
Confidence 3689998765 4554444 6554 5 4433 222223333 4455689999887766789999999999999999999
Q ss_pred CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233 94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG 173 (300)
Q Consensus 94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg 173 (300)
+|+||||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|+|.. . .+ . |.+|.|||||
T Consensus 84 ~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~---~-~~--~--~~~L~gktvG 155 (409)
T PRK11790 84 IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNK---S-AA--G--SFEVRGKTLG 155 (409)
T ss_pred eecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccc---c-cc--C--cccCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999972 1 11 2 6789999999
Q ss_pred EEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEE
Q 022233 174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV 252 (300)
Q Consensus 174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l 252 (300)
|||+|+||+.+|+++++|||+|++||++..... +.....+++|++++||+|++|+|+|++|+++|+++.|++||+|++|
T Consensus 156 IiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~l 235 (409)
T PRK11790 156 IVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAIL 235 (409)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEE
Confidence 999999999999999999999999998754322 2334568999999999999999999999999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-----CCCCCCCCCC
Q 022233 253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-----KELXXXXXXX 300 (300)
Q Consensus 253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-----~~L~~~~nv~ 300 (300)
||+|||++||++||++||++|+|+||+||||++||++. +|||++|||+
T Consensus 236 IN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvi 288 (409)
T PRK11790 236 INASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVI 288 (409)
T ss_pred EECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEE
Confidence 99999999999999999999999999999999999874 3899999985
No 9
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.4e-59 Score=445.57 Aligned_cols=276 Identities=25% Similarity=0.365 Sum_probs=232.3
Q ss_pred CCCeEEEECCCCCCcc-ccchhhhccc-CeEEEecC-C-CCChHHHHHhcc-CCcEEEEEeCCCCCCHHHHccCCC--cc
Q 022233 15 DLPRVLLFKPPPDFHL-FGDECFSSNK-FKFLKAWE-S-PLPLDQFLKTHA-QSVEAILSSGGAPVTAETLRLMPA--VR 87 (300)
Q Consensus 15 ~kp~vl~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~-~-~~~~~~~l~~~~-~~~d~ii~~~~~~~~~e~l~~~p~--Lk 87 (300)
-|++|+++.+. .+. ..+. |.+. +++..+.. . ..+.++ +.+.+ +++|+++++...++++++++++|+ ||
T Consensus 14 ~~~~v~~~~~~--~~~~~~~~--L~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk 88 (386)
T PLN02306 14 GKYRVVSTKPM--PGTRWINL--LVDQDCRVEICTEKKTILSVED-IIALIGDKCDGVIGQLTEDWGETLFSALSKAGGK 88 (386)
T ss_pred CCceEEEeCCC--CcHHHHHH--HHhcCceEEecCCcCCCCCHHH-HHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCce
Confidence 47889998876 332 3444 6554 66643221 1 123344 44444 579999987677899999999995 69
Q ss_pred eEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCccccc
Q 022233 88 LVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKL 167 (300)
Q Consensus 88 ~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l 167 (300)
+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..+. . .+ .. |.+|
T Consensus 89 ~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~-~-~~-~~--g~~L 163 (386)
T PLN02306 89 AFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWL-P-HL-FV--GNLL 163 (386)
T ss_pred EEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccc-c-cc-cC--CcCC
Confidence 999999999999999999999999999999999999999999999999999999999999985221 1 11 12 7789
Q ss_pred CCCEEEEEecChhHHHHHHHHH-hCCCEEEEECCCCCCCC-------C------------CcccCCHHHHhhcCCEEEEe
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSV-------S------------YPFYSNVCELAANCDILIIC 227 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~-~~g~~V~~~~~~~~~~~-------~------------~~~~~~l~e~l~~aDvV~l~ 227 (300)
.|+||||||+|+||+.+|++++ +|||+|++||++..... + .....+++|++++||+|++|
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh 243 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLH 243 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEe
Confidence 9999999999999999999985 99999999998753210 0 11235899999999999999
Q ss_pred cCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233 228 CGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX 300 (300)
Q Consensus 228 ~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~ 300 (300)
+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++||++|||+
T Consensus 244 ~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVi 316 (386)
T PLN02306 244 PVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAV 316 (386)
T ss_pred CCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEE
Confidence 9999999999999999999999999999999999999999999999999999999999998777899999985
No 10
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.8e-59 Score=440.69 Aligned_cols=272 Identities=25% Similarity=0.405 Sum_probs=229.7
Q ss_pred cCCCCCeEEEECCCCCCccccch--hhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceE
Q 022233 12 ESQDLPRVLLFKPPPDFHLFGDE--CFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLV 89 (300)
Q Consensus 12 ~~~~kp~vl~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I 89 (300)
.+++|||||++++. .+..... +.+ +.+.++.+.. .+.++ +.+.++++|+++++ ..++++++++.+|+||||
T Consensus 14 ~~~~~~~vl~~~~~--~~~~~~~~~~~~-~~~~~~~~~~--~~~~e-~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I 86 (347)
T PLN02928 14 SDMRPTRVLFCGPE--FPASYSYTREYL-QKYPFIQVDA--VARED-VPDVIANYDICVPK-MMRLDADIIARASQMKLI 86 (347)
T ss_pred CCCCCCEEEEECCC--chhHHHHHHHHh-hcCCeeEecC--CCHHH-HHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEE
Confidence 36788899999876 3322111 113 3343333221 12334 34556899998874 568999999999999999
Q ss_pred EEcCCCCCCCChhHHhhCCeEEEeCCCC---CchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccc
Q 022233 90 MTTSAGLNHVDIAECRRRGITVANAGNV---FSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSK 166 (300)
Q Consensus 90 ~~~~~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~ 166 (300)
++.|+|+|+||++++.++||.|+|+|++ ++.+||||++++||+++|++..+++.+++|.|.. +. +.+
T Consensus 87 ~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~--------~~--~~~ 156 (347)
T PLN02928 87 MQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE--------PI--GDT 156 (347)
T ss_pred EECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc--------cc--ccC
Confidence 9999999999999999999999999985 7899999999999999999999999999999961 12 678
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-C---------------CcccCCHHHHhhcCCEEEEecCC
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-S---------------YPFYSNVCELAANCDILIICCGL 230 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~---------------~~~~~~l~e~l~~aDvV~l~~p~ 230 (300)
|.|+||||||+|.||+.+|++|++|||+|++|+|+..... . .....++++++++||+|++|+|+
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPl 236 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTL 236 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCC
Confidence 9999999999999999999999999999999998743211 0 11356899999999999999999
Q ss_pred ChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233 231 TAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX 300 (300)
Q Consensus 231 ~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~ 300 (300)
|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||+
T Consensus 237 t~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nvi 307 (347)
T PLN02928 237 TKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVI 307 (347)
T ss_pred ChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999875 4899999985
No 11
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=9e-59 Score=438.91 Aligned_cols=257 Identities=26% Similarity=0.401 Sum_probs=223.6
Q ss_pred hccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeC--CCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEe
Q 022233 37 SSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSG--GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVAN 113 (300)
Q Consensus 37 l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n 113 (300)
|++. ++++...+.+.+ ++.+.+.++++|++++.. ..++++++++++|+||||++.|+|+||||+++|.++||.|+|
T Consensus 71 l~~~g~~~v~~~~~~~~-~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n 149 (386)
T PLN03139 71 LESQGHQYIVTDDKEGP-DCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAE 149 (386)
T ss_pred HHhcCCeEEEeCCCCCC-HHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEE
Confidence 5555 455543332223 334455668999999753 247999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCC
Q 022233 114 AGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC 193 (300)
Q Consensus 114 ~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~ 193 (300)
+||+++.+||||++++||++.|++..+++.+++|.|... ... .. +++|.|++|||||+|+||+.+|++|++|||
T Consensus 150 ~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~---~~~-~~--~~~L~gktVGIVG~G~IG~~vA~~L~afG~ 223 (386)
T PLN03139 150 VTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA---GIA-YR--AYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 223 (386)
T ss_pred CCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc---ccc-CC--CcCCCCCEEEEEeecHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999721 111 12 678999999999999999999999999999
Q ss_pred EEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233 194 SISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR 268 (300)
Q Consensus 194 ~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~ 268 (300)
+|.+||++..+. .++....+++|++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||++
T Consensus 224 ~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~ 303 (386)
T PLN03139 224 NLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVAD 303 (386)
T ss_pred EEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHH
Confidence 999999875321 133445689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233 269 CLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX 300 (300)
Q Consensus 269 aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~ 300 (300)
||++|+|+||+||||++||+++ +|||++|||+
T Consensus 304 AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvi 336 (386)
T PLN03139 304 ACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHA 336 (386)
T ss_pred HHHcCCceEEEEcCCCCCCCCCCChhhcCCCeE
Confidence 9999999999999999999875 5899999985
No 12
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=9.6e-59 Score=438.95 Aligned_cols=257 Identities=28% Similarity=0.439 Sum_probs=223.9
Q ss_pred hccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeC--CCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEe
Q 022233 37 SSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSG--GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVAN 113 (300)
Q Consensus 37 l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n 113 (300)
+++. ++++...+.+.+ ++.+.+.++++|++++.. ..++++++++++|+||||++.|+|+||||+++|+++||.|+|
T Consensus 64 l~~~g~e~~~~~~~~~~-~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n 142 (385)
T PRK07574 64 LEERGHELVVTSDKDGP-DSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAE 142 (385)
T ss_pred HHhcCcEEEEeCCCCCC-HHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEc
Confidence 5555 565543222222 333455668999999853 357999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCC
Q 022233 114 AGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC 193 (300)
Q Consensus 114 ~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~ 193 (300)
++++++.+||||++++||++.|++..+++.+++|.|... ... .. +++|.|++|||||+|+||+.+|++|++|||
T Consensus 143 ~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~---~~~-~~--~~~L~gktVGIvG~G~IG~~vA~~l~~fG~ 216 (385)
T PRK07574 143 VTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIA---DCV-SR--SYDLEGMTVGIVGAGRIGLAVLRRLKPFDV 216 (385)
T ss_pred CCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcc---ccc-cc--ceecCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999731 111 12 678999999999999999999999999999
Q ss_pred EEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233 194 SISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR 268 (300)
Q Consensus 194 ~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~ 268 (300)
+|++|||+..+. .+...+.+++|++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||++
T Consensus 217 ~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~ 296 (385)
T PRK07574 217 KLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVR 296 (385)
T ss_pred EEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHH
Confidence 999999976321 233445789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233 269 CLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX 300 (300)
Q Consensus 269 aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~ 300 (300)
||++|+|+||+||||++||+++ +|||++|||+
T Consensus 297 AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvi 329 (385)
T PRK07574 297 ALESGHLAGYAGDVWFPQPAPADHPWRTMPRNG 329 (385)
T ss_pred HHHhCCccEEEEecCCCCCCCCCChHHhCCCeE
Confidence 9999999999999999999875 4999999985
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=6.2e-58 Score=451.55 Aligned_cols=268 Identities=29% Similarity=0.428 Sum_probs=232.7
Q ss_pred eEEEECCCCCCccccchhhhccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCC
Q 022233 18 RVLLFKPPPDFHLFGDECFSSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGL 96 (300)
Q Consensus 18 ~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~ 96 (300)
|||++.+. .+...+. +++. +++.. . ...+.+++ .+.++++|++++++..++++++++++|+||||++.|+|+
T Consensus 1 ~vli~~~~--~~~~~~~--l~~~~~~~~~-~-~~~~~~~~-~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 73 (525)
T TIGR01327 1 KVLIADPI--SPDGIDI--LEDVGVEVDV-Q-TGLSREEL-LEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGV 73 (525)
T ss_pred CEEEeCCC--CHHHHHH--HHhcCcEEEe-C-CCCCHHHH-HHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCccc
Confidence 47888775 4555444 6554 45543 2 22233444 455689999998777789999999999999999999999
Q ss_pred CCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEe
Q 022233 97 NHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVG 176 (300)
Q Consensus 97 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG 176 (300)
||||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|+|.+ . .+ . |.+|.||||||||
T Consensus 74 d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~-~~--~--g~~l~gktvgIiG 145 (525)
T TIGR01327 74 DNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDR---K-AF--M--GTELYGKTLGVIG 145 (525)
T ss_pred chhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccc---c-cc--C--ccccCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999972 2 12 2 7899999999999
Q ss_pred cChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEE
Q 022233 177 LGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV 252 (300)
Q Consensus 177 ~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l 252 (300)
+|+||+.+|++|++|||+|++||++.... .+.....+++|++++||+|++|+|++++|+++|+++.|+.||+|++|
T Consensus 146 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l 225 (525)
T TIGR01327 146 LGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVII 225 (525)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEE
Confidence 99999999999999999999999863321 13333458999999999999999999999999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233 253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX 300 (300)
Q Consensus 253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~ 300 (300)
||+|||++||++||++||++|+|+||+||||++||++++|||++|||+
T Consensus 226 IN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 273 (525)
T TIGR01327 226 VNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI 273 (525)
T ss_pred EEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence 999999999999999999999999999999999997777999999985
No 14
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-58 Score=417.73 Aligned_cols=267 Identities=26% Similarity=0.398 Sum_probs=236.9
Q ss_pred eEEEECCCCCCccccchhhhcccC-eEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHc-cCCCcceEEEcCCC
Q 022233 18 RVLLFKPPPDFHLFGDECFSSNKF-KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLR-LMPAVRLVMTTSAG 95 (300)
Q Consensus 18 ~vl~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~-~~p~Lk~I~~~~~G 95 (300)
+||++.+. .+.-.+. +++.+ ++..+.+. ..+|. ...++++|++++++.+++++++++ ...+||+|++.++|
T Consensus 8 ~il~~e~~--~~~~~~~--l~~~g~~v~~~~~~--~~eel-~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G 80 (406)
T KOG0068|consen 8 KILVAESL--DQACIEI--LKDNGYQVEFKKNL--SLEEL-IEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIG 80 (406)
T ss_pred eEEEeccc--chHHHHH--HHhcCceEEEeccC--CHHHH-HHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccC
Confidence 89999887 5655666 88877 55443332 24444 445689999999999999999999 55699999999999
Q ss_pred CCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEE
Q 022233 96 LNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIV 175 (300)
Q Consensus 96 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIi 175 (300)
+||||+++|.++||.|.|+|.+|+.++||+++++++++.|++++....+++|+|.+ . .| + |.+|+|||+||+
T Consensus 81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr---~-~~--~--G~el~GKTLgvl 152 (406)
T KOG0068|consen 81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR---V-KY--L--GWELRGKTLGVL 152 (406)
T ss_pred ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee---c-ce--e--eeEEeccEEEEe
Confidence 99999999999999999999999999999999999999999999999999999982 2 23 3 899999999999
Q ss_pred ecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcE
Q 022233 176 GLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV 251 (300)
Q Consensus 176 G~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~ 251 (300)
|+|+||+.+|++++.+||+|++||+...... +. ...+++|++..||||++|+|++|+|+++++.+.|++||+|..
T Consensus 153 G~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gv-q~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVr 231 (406)
T KOG0068|consen 153 GLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGV-QLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVR 231 (406)
T ss_pred ecccchHHHHHHHHhcCceEEeecCCCchHHHHhccc-eeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcE
Confidence 9999999999999999999999987654322 33 356899999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC---CCCCCCCCCC
Q 022233 252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP---KELXXXXXXX 300 (300)
Q Consensus 252 lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~---~~L~~~~nv~ 300 (300)
+||+|||++||++||++||++|+++||++|||++||+.. ..|.++|||+
T Consensus 232 iIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi 283 (406)
T KOG0068|consen 232 IINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVI 283 (406)
T ss_pred EEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCcee
Confidence 999999999999999999999999999999999999874 4799999985
No 15
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.8e-57 Score=445.29 Aligned_cols=267 Identities=30% Similarity=0.413 Sum_probs=232.4
Q ss_pred eEEEECCCCCCccccchhhhccc--CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCC
Q 022233 18 RVLLFKPPPDFHLFGDECFSSNK--FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAG 95 (300)
Q Consensus 18 ~vl~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G 95 (300)
|||++.+. .+...+. |++. +++.. . ...+.+++ .+.++++|++++++..++++++++++|+||||++.|+|
T Consensus 2 ~ili~~~~--~~~~~~~--l~~~~~~~v~~-~-~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G 74 (526)
T PRK13581 2 KVLVSDPI--SPAGLEI--LKDAPGVEVDV-K-TGLDKEEL-LEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVG 74 (526)
T ss_pred eEEEeCCC--CHHHHHH--HhccCCeEEEe-C-CCCCHHHH-HHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcc
Confidence 68888775 4444444 6664 45442 1 22233444 45568999999877778999999999999999999999
Q ss_pred CCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEE
Q 022233 96 LNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIV 175 (300)
Q Consensus 96 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIi 175 (300)
+||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+ . .+ . |.+|.||+||||
T Consensus 75 ~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~---~-~~--~--g~~l~gktvgIi 146 (526)
T PRK13581 75 VDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWER---K-KF--M--GVELYGKTLGII 146 (526)
T ss_pred cccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCc---c-Cc--c--ccccCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999972 1 12 2 788999999999
Q ss_pred ecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcE
Q 022233 176 GLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV 251 (300)
Q Consensus 176 G~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~ 251 (300)
|+|+||+.+|++|++|||+|++||++.... .+... .+++|++++||+|++|+|++++|+++|+++.|+.||+|++
T Consensus 147 G~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~ 225 (526)
T PRK13581 147 GLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVEL-VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVR 225 (526)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeE
Confidence 999999999999999999999999864321 13333 3899999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233 252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX 300 (300)
Q Consensus 252 lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~ 300 (300)
|||+|||++||++||++||++|+|+||+||||++||++++|||++|||+
T Consensus 226 lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 274 (526)
T PRK13581 226 IINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV 274 (526)
T ss_pred EEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence 9999999999999999999999999999999999998777999999985
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-55 Score=412.17 Aligned_cols=273 Identities=17% Similarity=0.328 Sum_probs=227.0
Q ss_pred CeEEEECCCCCCccccchhhhccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCC--CcceEEEcC
Q 022233 17 PRVLLFKPPPDFHLFGDECFSSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMP--AVRLVMTTS 93 (300)
Q Consensus 17 p~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p--~Lk~I~~~~ 93 (300)
.||++.+--+...++... ++++. +++.. ..... .++. .+.++++|++++++..++++++++++| +||+|++.|
T Consensus 2 ~~i~~~~~~~~e~~~~~~-~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~ 77 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALN-WGKKNNVEVTT-SKELL-SSAT-VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRT 77 (330)
T ss_pred cEEEEEeCcHHHHHHHHH-HHHhcCeEEEE-cCCCC-CHHH-HHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecc
Confidence 367777554323333333 23333 23222 22222 2333 456689999998776789999999997 899999999
Q ss_pred CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233 94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG 173 (300)
Q Consensus 94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg 173 (300)
+|+|+||+++|+++||.|+|+|++++++||||++++||++.|++..+++.+++|.|.+ ... .. +.+|+|++||
T Consensus 78 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w---~~~--~~--~~~l~g~~Vg 150 (330)
T PRK12480 78 AGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTW---QAE--IM--SKPVKNMTVA 150 (330)
T ss_pred cccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCccc---ccc--cC--ccccCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999997752 111 12 6789999999
Q ss_pred EEecChhHHHHHHHHHhCCCEEEEECCCCCCCCC-CcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEE
Q 022233 174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVS-YPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV 252 (300)
Q Consensus 174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~-~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l 252 (300)
|||+|.||+++|++|+++|++|.+|+++...... .....++++++++||+|++|+|++++|+++++++.|+.||+|++|
T Consensus 151 IIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavl 230 (330)
T PRK12480 151 IIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAIL 230 (330)
T ss_pred EECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEE
Confidence 9999999999999999999999999987654322 223458999999999999999999999999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC----------C----CCCCCCCCCC
Q 022233 253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV----------P----KELXXXXXXX 300 (300)
Q Consensus 253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~----------~----~~L~~~~nv~ 300 (300)
||+|||++||++||++||++|+|+||+||||++||+. + .|||++|||+
T Consensus 231 IN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvi 292 (330)
T PRK12480 231 VNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERIL 292 (330)
T ss_pred EEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEE
Confidence 9999999999999999999999999999999999962 1 2699999985
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=2.4e-55 Score=410.96 Aligned_cols=274 Identities=19% Similarity=0.302 Sum_probs=231.8
Q ss_pred CCCCeEEEECCCCCCccccchhhhcccCeEEE-ecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCC--cceEE
Q 022233 14 QDLPRVLLFKPPPDFHLFGDECFSSNKFKFLK-AWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA--VRLVM 90 (300)
Q Consensus 14 ~~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~--Lk~I~ 90 (300)
+||++|+++.+. ..++.+. +.+.+++.. .+.... .++.+ +.++++|+++++...++++++++++|+ ||+|+
T Consensus 1 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~-~~e~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~ 74 (332)
T PRK08605 1 MTKIKIMSVRDE--DAPYIKA--WAEKHHVEVDLTKEAL-TDDNV-EEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIA 74 (332)
T ss_pred CcEEEEEecCHH--HHHHHHH--HHHhcCeEEEEecCCC-CHHHH-HHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEE
Confidence 478889999875 4555555 555555432 122222 23433 456799999987778999999999997 99999
Q ss_pred EcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCC
Q 022233 91 TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGK 170 (300)
Q Consensus 91 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~ 170 (300)
+.|+|+|+||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|.+ ... .. |++|+|+
T Consensus 75 ~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~---~~~--~~--~~~l~g~ 147 (332)
T PRK08605 75 QRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW---EPP--IL--SRSIKDL 147 (332)
T ss_pred EcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc---ccc--cc--cceeCCC
Confidence 9999999999999999999999999999999999999999999999999999999998852 111 12 7889999
Q ss_pred EEEEEecChhHHHHHHHH-HhCCCEEEEECCCCCCCC--CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233 171 RVGIVGLGSIGSLVAKRL-DAFGCSISYNSRTKKPSV--SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG 247 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l-~~~g~~V~~~~~~~~~~~--~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk 247 (300)
+|||||+|.||+++|++| ++||++|++||++..... ......++++++++||+|++|+|++++|+++++++.++.||
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk 227 (332)
T PRK08605 148 KVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFK 227 (332)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCC
Confidence 999999999999999999 789999999998764321 22334589999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC--CCC------------CCCCCCCCC
Q 022233 248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD--VPK------------ELXXXXXXX 300 (300)
Q Consensus 248 ~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~--~~~------------~L~~~~nv~ 300 (300)
+|++|||+|||.++|+++|+++|++|+|+||+||||+.||+ +.+ +||++|||+
T Consensus 228 ~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvi 294 (332)
T PRK08605 228 KGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVI 294 (332)
T ss_pred CCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEE
Confidence 99999999999999999999999999999999999999983 211 499999985
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=4.8e-55 Score=401.92 Aligned_cols=229 Identities=44% Similarity=0.721 Sum_probs=206.6
Q ss_pred EEEEeCCCCCCHHHHccC-CCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHH
Q 022233 66 AILSSGGAPVTAETLRLM-PAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFV 144 (300)
Q Consensus 66 ~ii~~~~~~~~~e~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~ 144 (300)
++.+......+.+.+.+. |+||+|+++|+|+||||+++|++|||+|+|+|++++++|||++++++|.++|++..+++.+
T Consensus 64 ~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~ 143 (336)
T KOG0069|consen 64 AISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMV 143 (336)
T ss_pred eeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 344444456778888766 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CC---cccCCHHHHhhc
Q 022233 145 KQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SY---PFYSNVCELAAN 220 (300)
Q Consensus 145 ~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~---~~~~~l~e~l~~ 220 (300)
++|.|. ....+ ++ |..+.||||||+|+|+||+.+|++|++||+.+.|++|++.+.. .. ....++++++.+
T Consensus 144 ~~g~w~---~~~~~-~~--g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~ 217 (336)
T KOG0069|consen 144 RNGGWG---WAGGW-PL--GYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLAN 217 (336)
T ss_pred hcCCcc---ccCCc-cc--cccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhh
Confidence 999994 23344 45 8999999999999999999999999999988999999765432 11 224599999999
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX 300 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~ 300 (300)
||+|++|||+|++|+|+||++.+.+||+|+++||++||.++|++++++||++|+|++||||||++||.++++|++++||+
T Consensus 218 sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv 297 (336)
T KOG0069|consen 218 SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVV 297 (336)
T ss_pred CCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999996678999999984
No 19
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=2.4e-53 Score=400.65 Aligned_cols=244 Identities=25% Similarity=0.376 Sum_probs=207.3
Q ss_pred eEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCC
Q 022233 18 RVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLN 97 (300)
Q Consensus 18 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d 97 (300)
|||+...++ ...+. +.+.+++......+.+. + .++++|++++++.+++++++++ .|+||+|+++++|+|
T Consensus 2 kIl~d~~~~---~~~~~--~~~~~ev~~~~~~~~~~-~----~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D 70 (378)
T PRK15438 2 KILVDENMP---YAREL--FSRLGEVKAVPGRPIPV-A----QLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTD 70 (378)
T ss_pred EEEEeCCcc---hHHHH--HhhcCcEEEeCCCCCCH-H----HhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECccccc
Confidence 688886653 22223 55556765532222222 2 2478999999888899999996 699999999999999
Q ss_pred CCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEec
Q 022233 98 HVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGL 177 (300)
Q Consensus 98 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~ 177 (300)
|||+++++++||.|+|+||+++.+||||++++||++.|+. |.+|.|+||||||+
T Consensus 71 ~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~--------------------------g~~L~gktvGIIG~ 124 (378)
T PRK15438 71 HVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD--------------------------GFSLHDRTVGIVGV 124 (378)
T ss_pred ccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC--------------------------CCCcCCCEEEEECc
Confidence 9999999999999999999999999999999999988851 33588999999999
Q ss_pred ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChh----hhhcchHHHHhcCCCCcEEE
Q 022233 178 GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAE----THHMINKQVLSALGKEGVVI 253 (300)
Q Consensus 178 G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~----t~~li~~~~l~~mk~ga~lI 253 (300)
|+||+.+|++|++|||+|++||+..........+.++++++++||+|++|+|+|++ |+++|+++.|+.||+|++||
T Consensus 125 G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI 204 (378)
T PRK15438 125 GNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI 204 (378)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE
Confidence 99999999999999999999997543222112356899999999999999999996 99999999999999999999
Q ss_pred EcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCC
Q 022233 254 NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXX 298 (300)
Q Consensus 254 n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~n 298 (300)
|+|||++||++||+++|++|++.+|+||||++||.++.+||..++
T Consensus 205 N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~ 249 (378)
T PRK15438 205 NACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD 249 (378)
T ss_pred ECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC
Confidence 999999999999999999999999999999999987778887654
No 20
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=3.9e-52 Score=393.40 Aligned_cols=246 Identities=23% Similarity=0.367 Sum_probs=208.1
Q ss_pred CeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCC
Q 022233 17 PRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGL 96 (300)
Q Consensus 17 p~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~ 96 (300)
.||++-+.+|+..++ +++..++........+ .+.++++|++++++.+++++++++. |+||+|+++++|+
T Consensus 1 mkI~~d~~~p~~~~~-----~~~~~~v~~~~~~~~~-----~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~ 69 (381)
T PRK00257 1 MKIVADENIPLLDAF-----FAGFGEIRRLPGRAFD-----RAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGT 69 (381)
T ss_pred CEEEEecCchhHHHH-----HhhCCcEEEcCCcccC-----HHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccc
Confidence 378888777433222 4444455432211111 2234789999988888999999984 8999999999999
Q ss_pred CCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEe
Q 022233 97 NHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVG 176 (300)
Q Consensus 97 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG 176 (300)
||||+++++++||.|+|+||+++.+||||+++++|++.|+ . |.+|.|+||||||
T Consensus 70 D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-------------~-------------g~~l~gktvGIIG 123 (381)
T PRK00257 70 DHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-------------E-------------GVDLAERTYGVVG 123 (381)
T ss_pred cccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-------------c-------------CCCcCcCEEEEEC
Confidence 9999999999999999999999999999999999998874 1 4468899999999
Q ss_pred cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCCh----hhhhcchHHHHhcCCCCcEE
Q 022233 177 LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTA----ETHHMINKQVLSALGKEGVV 252 (300)
Q Consensus 177 ~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~----~t~~li~~~~l~~mk~ga~l 252 (300)
+|+||+.+|+++++|||+|++||+......+...+.++++++++||+|++|+|+|+ .|+++|+++.|+.||+|++|
T Consensus 124 ~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gail 203 (381)
T PRK00257 124 AGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWL 203 (381)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEE
Confidence 99999999999999999999999864433222345689999999999999999998 59999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233 253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX 300 (300)
Q Consensus 253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~ 300 (300)
||+|||++||++||+++|++|++.+|+||||++||.++++||+. ||+
T Consensus 204 IN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi 250 (381)
T PRK00257 204 INASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTI 250 (381)
T ss_pred EECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEE
Confidence 99999999999999999999999999999999999877788885 763
No 21
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=4.9e-52 Score=384.97 Aligned_cols=225 Identities=23% Similarity=0.300 Sum_probs=198.6
Q ss_pred CCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhH-----HhhCCeEEEeCCC-CCchhHHHHHHHHHHHHhh
Q 022233 62 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAE-----CRRRGITVANAGN-VFSEDVADLAVGLLIDLLR 135 (300)
Q Consensus 62 ~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~-----~~~~gI~v~n~p~-~~~~~vAE~~l~l~L~~~R 135 (300)
+++|+++++. .+.+.++ .|+||||++.|+|+|++|... +..+||.|+|+++ .++.+||||++++||++.|
T Consensus 37 ~~a~~~~~~~---~~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r 112 (312)
T PRK15469 37 DPADYALVWH---PPVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFR 112 (312)
T ss_pred ccCeEEEEeC---CChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHc
Confidence 5789988864 2567776 589999999999999998332 3458999999864 6899999999999999999
Q ss_pred chHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCC---cccC
Q 022233 136 NISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSY---PFYS 212 (300)
Q Consensus 136 ~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~---~~~~ 212 (300)
++..+.+.+++|.|.. . + +.+++|+||||||+|.||+.+|++|++|||+|.+|+++.+...+. ....
T Consensus 113 ~~~~~~~~~~~~~w~~---~----~---~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~ 182 (312)
T PRK15469 113 RFDDYQALQNSSHWQP---L----P---EYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGRE 182 (312)
T ss_pred ChHHHHHHHHhCCcCC---C----C---CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccc
Confidence 9999999999999972 1 1 457899999999999999999999999999999999876543222 2246
Q ss_pred CHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-C
Q 022233 213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-K 291 (300)
Q Consensus 213 ~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~ 291 (300)
++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +
T Consensus 183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~ 262 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPES 262 (312)
T ss_pred cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999875 4
Q ss_pred CCCCCCCCC
Q 022233 292 ELXXXXXXX 300 (300)
Q Consensus 292 ~L~~~~nv~ 300 (300)
|||++|||+
T Consensus 263 pl~~~~nvi 271 (312)
T PRK15469 263 PLWQHPRVA 271 (312)
T ss_pred hhhcCCCeE
Confidence 899999985
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-51 Score=378.84 Aligned_cols=218 Identities=28% Similarity=0.364 Sum_probs=193.2
Q ss_pred CCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHH
Q 022233 62 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASD 141 (300)
Q Consensus 62 ~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~ 141 (300)
.++|++++.. . +..+|+||||++.|+|+|+||+++|++++|.++|. +.++.+||||++++||++.|+++.++
T Consensus 33 ~~a~~~~~~~-~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~ 104 (303)
T PRK06436 33 YDAEAILIKG-R------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENN 104 (303)
T ss_pred CCCCEEEecC-C------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHH
Confidence 4678876533 2 23468999999999999999999999998888775 78899999999999999999999999
Q ss_pred HHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCc-ccCCHHHHhhc
Q 022233 142 RFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYP-FYSNVCELAAN 220 (300)
Q Consensus 142 ~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~-~~~~l~e~l~~ 220 (300)
+.+++|+|.. . . +.+|+|++|||||+|+||+.+|+++++|||+|++|+|+..+. +.. .+.++++++++
T Consensus 105 ~~~~~g~w~~---~-----~--~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~ 173 (303)
T PRK06436 105 YNMKNGNFKQ---S-----P--TKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-GISSIYMEPEDIMKK 173 (303)
T ss_pred HHHHcCCCCC---C-----C--CCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-CcccccCCHHHHHhh
Confidence 9999999982 1 1 568999999999999999999999999999999999975432 222 25689999999
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX 300 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~ 300 (300)
||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|++.+|+||||++||++++. .+|||+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nvi 251 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVI 251 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999986543 678874
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=8.3e-44 Score=305.52 Aligned_cols=167 Identities=35% Similarity=0.523 Sum_probs=145.3
Q ss_pred HHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC
Q 022233 127 VGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV 206 (300)
Q Consensus 127 l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~ 206 (300)
+++||++.|+++.+++.+++|.|. .... .. +++++|+||||||+|+||+.+|+++++|||+|++|+|+..+..
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~---~~~~--~~--~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWA---SRER--FP--GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHH---HHTT--TT--BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCC---CCcC--CC--ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence 689999999999999999999992 0111 22 7899999999999999999999999999999999999876432
Q ss_pred ----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeC
Q 022233 207 ----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282 (300)
Q Consensus 207 ----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV 282 (300)
....+.+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+|||
T Consensus 74 ~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV 153 (178)
T PF02826_consen 74 GADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDV 153 (178)
T ss_dssp HHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS
T ss_pred hcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEEC
Confidence 1224579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC-CCCCCCCCC
Q 022233 283 FENEPDVPK-ELXXXXXXX 300 (300)
Q Consensus 283 ~~~EP~~~~-~L~~~~nv~ 300 (300)
|++||+++. |||++|||+
T Consensus 154 ~~~EP~~~~~~l~~~~nvi 172 (178)
T PF02826_consen 154 FEPEPLPADSPLWDLPNVI 172 (178)
T ss_dssp -SSSSSSTTHHHHTSTTEE
T ss_pred CCCCCCCCCChHHcCCCEE
Confidence 999999876 999999984
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.95 E-value=1.2e-28 Score=225.33 Aligned_cols=234 Identities=21% Similarity=0.341 Sum_probs=197.9
Q ss_pred HHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHH
Q 022233 54 DQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDL 133 (300)
Q Consensus 54 ~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~ 133 (300)
.+..++.+.++-+-+......++++.++++.-||++...+.|+|++|+.+|.+-||.|||.|+..-+.+|+.++.+||++
T Consensus 64 qeIhekvLneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l 143 (435)
T KOG0067|consen 64 QEIHEKVLNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNL 143 (435)
T ss_pred HHHHHHHHHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhh
Confidence 34444444444333444566799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHhCCCCCcccCC-CccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC----CCCC
Q 022233 134 LRNISASDRFVKQWLRPRQAAEG-DCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP----SVSY 208 (300)
Q Consensus 134 ~R~~~~~~~~~~~g~w~~~~~~~-~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~----~~~~ 208 (300)
+|+.++..+.+++|.|.+..... .. . +....++|.++|++|+|+.|++++.++++||+.|+.||+.... ..+.
T Consensus 144 ~rrntw~cq~l~eg~~~q~~~q~~e~-a-~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~ 221 (435)
T KOG0067|consen 144 YRRNTWLCQALREGTCTQGLEQVREA-A-CGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGL 221 (435)
T ss_pred hcccchhhhhhcccceeechhhhhhh-h-hccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhccc
Confidence 99999999999999997432111 11 1 1135689999999999999999999999999999999987543 2355
Q ss_pred cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233 209 PFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288 (300)
Q Consensus 209 ~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~ 288 (300)
.+..+++|++-++|.+++||-+++.++++|+.-..++|+.|++++|++||.++|+++|.++|++|++.+++=.-|..-|+
T Consensus 222 ~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa~~~~~~~~l 301 (435)
T KOG0067|consen 222 QRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAAPRSFKQGPL 301 (435)
T ss_pred ceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceecccCcccccccc
Confidence 66778999999999999999999999999999999999999999999999999999999999999999888222444444
Q ss_pred C
Q 022233 289 V 289 (300)
Q Consensus 289 ~ 289 (300)
.
T Consensus 302 ~ 302 (435)
T KOG0067|consen 302 K 302 (435)
T ss_pred c
Confidence 3
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.87 E-value=6.3e-22 Score=190.51 Aligned_cols=167 Identities=19% Similarity=0.295 Sum_probs=136.5
Q ss_pred EEcCCCCCCC-ChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccC
Q 022233 90 MTTSAGLNHV-DIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLG 168 (300)
Q Consensus 90 ~~~~~G~d~i-d~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~ 168 (300)
=-+++|+..+ -+....+-+|+|+|+|++++.+++|+++++++++. +..+|.+ +..+.
T Consensus 196 EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~----------------~~~La 253 (476)
T PTZ00075 196 EETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT----------------DVMIA 253 (476)
T ss_pred ecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc----------------CCCcC
Confidence 3457888775 23333446899999999999999999999999987 3334433 33588
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL 243 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l 243 (300)
|++++|+|+|.||+.+|+++++||++|+++++.+... .++. ..+++++++.||+|++|+ .+.++|+++.|
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~-~~~leell~~ADIVI~at----Gt~~iI~~e~~ 328 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ-VVTLEDVVETADIFVTAT----GNKDIITLEHM 328 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce-eccHHHHHhcCCEEEECC----CcccccCHHHH
Confidence 9999999999999999999999999999997764332 1332 357999999999999985 36889999999
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC
Q 022233 244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP 290 (300)
Q Consensus 244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~ 290 (300)
+.||+|+++||+||+ |++.++++|+.+. ++||++.||...
T Consensus 329 ~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 329 RRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred hccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 999999999999999 7888889998754 699999999754
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.84 E-value=7.2e-21 Score=174.81 Aligned_cols=164 Identities=21% Similarity=0.250 Sum_probs=132.1
Q ss_pred CCCHHHHccCCCcceEEEcCCCCCCCChh-HHhhCCeEEE------eCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHh
Q 022233 74 PVTAETLRLMPAVRLVMTTSAGLNHVDIA-ECRRRGITVA------NAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ 146 (300)
Q Consensus 74 ~~~~e~l~~~p~Lk~I~~~~~G~d~id~~-~~~~~gI~v~------n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~ 146 (300)
++++++++.+| .++...+|+++.|++ +|+++||+|+ |++.+|+.++||.++++++..
T Consensus 81 ~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------- 144 (287)
T TIGR02853 81 VLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------- 144 (287)
T ss_pred cccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh-------------
Confidence 46789999888 377788999999999 8999999999 898999999999999877741
Q ss_pred CCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc--ccCCHHHHhh
Q 022233 147 WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP--FYSNVCELAA 219 (300)
Q Consensus 147 g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~--~~~~l~e~l~ 219 (300)
. +.+++|++++|+|+|.||+.+|++|+++|++|++++|+.+.. .+.. ...++.++++
T Consensus 145 ---~-------------~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~ 208 (287)
T TIGR02853 145 ---T-------------DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVA 208 (287)
T ss_pred ---c-------------CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhc
Confidence 0 235789999999999999999999999999999999986532 1221 2346788899
Q ss_pred cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHhCCceEE
Q 022233 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP-IIDEQELVRCLVQGEIKGA 278 (300)
Q Consensus 220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~-~vd~~aL~~aL~~~~i~~a 278 (300)
++|+|++++|.. +++++.++.|++++++||++..+ -+|- ++.++..+...
T Consensus 209 ~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G~~a~ 259 (287)
T TIGR02853 209 EIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRGIKAL 259 (287)
T ss_pred cCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCCCEEE
Confidence 999999999864 57888999999999999998754 2343 44455565533
No 27
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.74 E-value=4.5e-18 Score=138.95 Aligned_cols=101 Identities=27% Similarity=0.423 Sum_probs=81.3
Q ss_pred EEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCC
Q 022233 19 VLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNH 98 (300)
Q Consensus 19 vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~ 98 (300)
||+++++ .++..+. |++.+++.. .. ..+ ++.+.+.++++|+++++...++++++++.+|+||||++.|+|+|+
T Consensus 1 ili~~~~--~~~~~~~--l~~~~~v~~-~~-~~~-~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 73 (133)
T PF00389_consen 1 ILITDPL--PDEEIER--LEEGFEVEF-CD-SPS-EEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDN 73 (133)
T ss_dssp EEESSS---SHHHHHH--HHHTSEEEE-ES-SSS-HHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTT
T ss_pred eEEeccC--CHHHHHH--HHCCceEEE-eC-CCC-HHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCc
Confidence 6888887 5767767 888566654 33 323 344455668999999977667999999999999999999999999
Q ss_pred CChhHHhhCCeEEEeCCCCCchhHHHHH
Q 022233 99 VDIAECRRRGITVANAGNVFSEDVADLA 126 (300)
Q Consensus 99 id~~~~~~~gI~v~n~p~~~~~~vAE~~ 126 (300)
||+++|+++||.|+|+||+++.+||||+
T Consensus 74 id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 74 IDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp B-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred ccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 9999999999999999999999999999
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.67 E-value=5.9e-16 Score=142.97 Aligned_cols=163 Identities=19% Similarity=0.268 Sum_probs=127.4
Q ss_pred hccCCcEEEEEeC----------------CCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCC-----
Q 022233 59 THAQSVEAILSSG----------------GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNV----- 117 (300)
Q Consensus 59 ~~~~~~d~ii~~~----------------~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~----- 117 (300)
+.++++|+|+..- ...++++.++.+|++..+. .|.+.++++ +.++++||.+.+....
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 3356899888631 1124788999999987444 599999988 8899999999998754
Q ss_pred -CchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEE
Q 022233 118 -FSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS 196 (300)
Q Consensus 118 -~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~ 196 (300)
++.++||.++.+.+. + + +..+.|++++|||+|.+|+.+++.|+.+|++|+
T Consensus 129 ~ns~~~aegav~~a~~---~---------------------~-----~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~ 179 (296)
T PRK08306 129 LNSIPTAEGAIMMAIE---H---------------------T-----PITIHGSNVLVLGFGRTGMTLARTLKALGANVT 179 (296)
T ss_pred hccHhHHHHHHHHHHH---h---------------------C-----CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE
Confidence 888889987765331 0 0 234679999999999999999999999999999
Q ss_pred EECCCCCCC-----CCCc--ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233 197 YNSRTKKPS-----VSYP--FYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 197 ~~~~~~~~~-----~~~~--~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~sr 257 (300)
+++|++... .+.. ...++.+.++++|+|+.++|. .+++++.++.|++++++||++.
T Consensus 180 v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 180 VGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred EEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 999986431 1222 224677889999999999884 4578899999999999999985
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.64 E-value=6.4e-16 Score=148.85 Aligned_cols=116 Identities=20% Similarity=0.263 Sum_probs=100.6
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
.+.|++++|+|+|.||+.+|++++++|++|+++++++... .++. ..+++++++.+|+|+.+ ..++++++.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence 3789999999999999999999999999999998876431 1333 34789999999999974 356788999
Q ss_pred HHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHhCCceEEEeeCCCCCC
Q 022233 241 QVLSALGKEGVVINIGR-GPIIDEQELVRC--LVQGEIKGAGLDVFENEP 287 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~sr-g~~vd~~aL~~a--L~~~~i~~a~LDV~~~EP 287 (300)
+.|+.||+|++++|+|| +..||+.+|.++ ++.+.++ +.+|+|+.|-
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 689999999998 8999997 9999999763
No 30
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.58 E-value=9.2e-15 Score=133.24 Aligned_cols=110 Identities=23% Similarity=0.300 Sum_probs=99.8
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQ 241 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~ 241 (300)
++||+||+|.||.+||++|...|+.|.+|||++++. .+.....+..|+.+++|+|++++|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 489999999999999999999999999999998762 2566778899999999999999999999999885 57
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233 242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD 281 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD 281 (300)
+++.+|+|.++||+|+.++...+.+.++++++.+. .||
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lD 118 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLD 118 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEe
Confidence 89999999999999999999999999999999874 355
No 31
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.55 E-value=8e-15 Score=123.93 Aligned_cols=107 Identities=20% Similarity=0.389 Sum_probs=87.5
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch-HHHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN-KQVL 243 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~-~~~l 243 (300)
++|||||+|.||+.||++|...|++|.+|||+++.. .+.....++.|++++||+|++++|..++++.++. .+++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999986542 2456678999999999999999999898888763 2278
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
+.+++|.++||++...+-....+.+.+++..+.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR 114 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce
Confidence 889999999999999999999999999987763
No 32
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.54 E-value=2.1e-14 Score=132.35 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=75.0
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~ 239 (300)
..|+|+||||||+|+||+++|++|+++|++|+++++..... .+.. ..+++|++++||+|++++|+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 45999999999999999999999999999999887653321 1333 35899999999999999997 67799999
Q ss_pred HHHHhcCCCCcEEEE
Q 022233 240 KQVLSALGKEGVVIN 254 (300)
Q Consensus 240 ~~~l~~mk~ga~lIn 254 (300)
++.++.||+|++|+-
T Consensus 90 ~eil~~MK~GaiL~f 104 (335)
T PRK13403 90 AEVEENLREGQMLLF 104 (335)
T ss_pred HHHHhcCCCCCEEEE
Confidence 999999999998754
No 33
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.54 E-value=2.9e-14 Score=136.19 Aligned_cols=115 Identities=22% Similarity=0.269 Sum_probs=98.9
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
.+.|++|+|+|+|.||+.+|++++++|++|+++++++... .++ ...+++++++.+|+|+.+.. +.++|+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence 4789999999999999999999999999999998765432 133 23468899999999988653 5778899
Q ss_pred HHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCceEEEeeCCCC
Q 022233 241 QVLSALGKEGVVINIGRGPI-IDEQELVRCLVQGEIKGAGLDVFEN 285 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~-vd~~aL~~aL~~~~i~~a~LDV~~~ 285 (300)
+.+..||+|++++|++|+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999999887777899999884
No 34
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.42 E-value=6.6e-13 Score=122.24 Aligned_cols=106 Identities=11% Similarity=0.249 Sum_probs=90.2
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc-h-HHHH
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMI-N-KQVL 243 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li-~-~~~l 243 (300)
+|||||+|.||+.+|++|...|++|.+|+++++.. .+.....+..+++++||+|++++|.++.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 58999999999999999999999999999986532 133345688899999999999999988887765 2 3467
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
+.+++|.++||+++..+.+.+++.+.++++.+.
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 889999999999999999999999999987654
No 35
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.41 E-value=9.4e-13 Score=121.41 Aligned_cols=118 Identities=21% Similarity=0.294 Sum_probs=96.1
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQV 242 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~ 242 (300)
++|||||+|.||+.+|+.+...|++|.+||+++... .+.....++++++++||+|++++|.+..++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 589999999999999999999999999999976532 1334456889999999999999999888887763 347
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP 287 (300)
++.+++|.++||+|+..+...+++.+.+++.++...---|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 788999999999999999999999999988766433333554444
No 36
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.39 E-value=1.6e-12 Score=120.29 Aligned_cols=109 Identities=19% Similarity=0.282 Sum_probs=93.4
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhc---CCEEEEecCCChhhhhcchHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAAN---CDILIICCGLTAETHHMINKQ 241 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~---aDvV~l~~p~~~~t~~li~~~ 241 (300)
++|||||+|+||+.||++|...|++|.+|||+++.. .+.....++++++++ +|+|++++|..+.++.++ ..
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence 479999999999999999999999999999976432 244456788998876 699999999888888887 46
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233 242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD 281 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD 281 (300)
++..+++|.++||+|+..+.+..++.+.+++..+. .+|
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 77889999999999999999999999999988764 366
No 37
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.39 E-value=1.4e-12 Score=120.51 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=94.2
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQV 242 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~ 242 (300)
++|||||+|.||.+||++|...|++|.+||++++.. .+.....++.+++++||+|++++|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 389999999999999999999999999999986542 2344567888999999999999999887777764 346
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD 281 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD 281 (300)
+..+++|.++||+|++.+...+.+.+.+.+..+. .+|
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~ld 118 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMD 118 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 7789999999999999999999999999998875 356
No 38
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.36 E-value=2.5e-12 Score=125.92 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=100.0
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCc---ccCCHHHHhhc---CCEEEEecCCChhhh
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYP---FYSNVCELAAN---CDILIICCGLTAETH 235 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~---~~~~l~e~l~~---aDvV~l~~p~~~~t~ 235 (300)
+|||||+|.||+.||++|...|++|.+|||++++.. +.. ...+++|+++. +|+|++++|..+.++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 699999999999999999999999999999865321 222 45689998876 999999999999999
Q ss_pred hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP 287 (300)
.++ ..+++.+++|.++||+|+...-+...+.+.+++.++.....=|.-.++
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 988 568889999999999999999999999999999998766555666555
No 39
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.35 E-value=3.6e-12 Score=122.57 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=112.0
Q ss_pred EEcCCCCCCC-ChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccC
Q 022233 90 MTTSAGLNHV-DIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLG 168 (300)
Q Consensus 90 ~~~~~G~d~i-d~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~ 168 (300)
=-+++|+..+ .+....+.+++|.|++..+..+.-|...+.- ++.|..- .. .. +..+.
T Consensus 154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~---------------~s~~~ai-~r----at--~~~l~ 211 (425)
T PRK05476 154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTG---------------ESLLDGI-KR----AT--NVLIA 211 (425)
T ss_pred ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHH---------------hhhHHHH-HH----hc--cCCCC
Confidence 4568888775 3344456789999999988877555333221 2222100 00 00 23478
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL 243 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l 243 (300)
|++++|+|+|.||+.+|++++++|++|+++++++.... ++. ..+++++++.+|+|+.++ .+.++|+.+.+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aT----G~~~vI~~~~~ 286 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTAT----GNKDVITAEHM 286 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECC----CCHHHHHHHHH
Confidence 99999999999999999999999999999998764421 332 347899999999998875 34667899999
Q ss_pred hcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022233 244 SALGKEGVVINIGRGPI-IDEQELVR 268 (300)
Q Consensus 244 ~~mk~ga~lIn~srg~~-vd~~aL~~ 268 (300)
..||+|++++|+++... +|.++|.+
T Consensus 287 ~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 287 EAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred hcCCCCCEEEEcCCCCCccChHHHhh
Confidence 99999999999999886 78888765
No 40
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.32 E-value=7.7e-12 Score=115.84 Aligned_cols=109 Identities=21% Similarity=0.243 Sum_probs=92.9
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhc---CCEEEEecCCChhhhhcchHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAAN---CDILIICCGLTAETHHMINKQ 241 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~---aDvV~l~~p~~~~t~~li~~~ 241 (300)
++|||||+|.||++||++|...|.+|.+||++++.. .+.....+++|+++. +|+|++++|..+.++.++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 479999999999999999999999999999986532 244455688888876 699999999887878777 46
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233 242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD 281 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD 281 (300)
+++.+++|.++||++++.+....++.+.+++.++. .+|
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~d 117 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVD 117 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEe
Confidence 77889999999999999999999999999998875 356
No 41
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.28 E-value=1.3e-11 Score=113.83 Aligned_cols=111 Identities=16% Similarity=0.206 Sum_probs=92.4
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQVL 243 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~l 243 (300)
++|||||+|+||..||++|...|++|.+|++++... .+.....+..+++++||+|++++|..++++.++. ...+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 379999999999999999999999999998875321 2344567888999999999999999888887763 2367
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeC
Q 022233 244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282 (300)
Q Consensus 244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV 282 (300)
+.+++|.++||+|+..+-....+.+.+++..+. .+|.
T Consensus 81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 778999999999999999999999999887664 4563
No 42
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.26 E-value=1.7e-11 Score=110.93 Aligned_cols=110 Identities=18% Similarity=0.278 Sum_probs=97.0
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN-- 239 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~-- 239 (300)
.+.++||+||+|.||..|+.+|...|++|++|||+.+.. .++....++.|+.+.||+||.++|...+.++++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 458899999999999999999999999999999987754 2566778999999999999999999999998884
Q ss_pred HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCce
Q 022233 240 KQVLSALGKEGVV-INIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 240 ~~~l~~mk~ga~l-In~srg~~vd~~aL~~aL~~~~i~ 276 (300)
...++..++|... ||.|+-.+--...|.++++.++..
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~ 150 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR 150 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe
Confidence 3467778888777 999999999999999999988664
No 43
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.25 E-value=1.2e-11 Score=115.19 Aligned_cols=116 Identities=23% Similarity=0.277 Sum_probs=85.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li 238 (300)
..|.|++|||||+|+||+++|++|+.+|++|.++++..... .+.. ..+.++++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 35899999999999999999999999999998776653321 1333 34899999999999999997765 6677
Q ss_pred hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCC
Q 022233 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK 291 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~ 291 (300)
++++++.|++|.+| -.+.|--+ ..+. ...+...||+--.|..|.
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G~~i--~~~~------~~p~~~~~Vi~vaPn~Pg 134 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHGFNI--HFGQ------IVPPADVDVIMVAPKGPG 134 (330)
T ss_pred HHHHHhcCCCCCEE-EECCCCCh--hhce------eccCCCCcEEEeCCCCCc
Confidence 78888999999988 55566221 1111 111345678877776553
No 44
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.22 E-value=5.5e-11 Score=116.25 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=98.1
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------C--CcccCCHHHHhh---cCCEEEEecCCChhhh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------S--YPFYSNVCELAA---NCDILIICCGLTAETH 235 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~--~~~~~~l~e~l~---~aDvV~l~~p~~~~t~ 235 (300)
.+|||||+|.||+.||++|...|++|.+|||+++... + .....+++|+++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 4799999999999999999999999999999876411 2 224578999886 5899999999999999
Q ss_pred hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP 287 (300)
.++ .++++.+++|.++||++.+..-|+..+.+.+.+.++.....=|...++
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 888 468888999999999999999999999999999988654444554433
No 45
>PLN02858 fructose-bisphosphate aldolase
Probab=99.21 E-value=5.4e-11 Score=129.01 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=98.2
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc--hHH
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMI--NKQ 241 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li--~~~ 241 (300)
.++||+||+|.||..||++|...|++|.+|||++... .++....++.|+.++||+|++++|..++++.++ ...
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g 83 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEG 83 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhh
Confidence 5689999999999999999999999999999987642 255567899999999999999999999999887 356
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeC
Q 022233 242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV 282 (300)
+++.+++|.++||+|+..+-....+.+.+.+.+-....+|.
T Consensus 84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 78889999999999999999999999999887711134663
No 46
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.21 E-value=8.4e-11 Score=108.80 Aligned_cols=105 Identities=18% Similarity=0.247 Sum_probs=87.3
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHH---hhcCCEEEEecCCChhhhhcchHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCEL---AANCDILIICCGLTAETHHMINKQ 241 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~---l~~aDvV~l~~p~~~~t~~li~~~ 241 (300)
++|||||+|.||..+|++|...|++|.+|||+++.. .+.....+++++ ++++|+|++++|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 479999999999999999999999999999986542 123334566664 45689999999987 777777 46
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
+.+.+++|.++||++.+...+...+.+.+++.++.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 77889999999999999999999999999888775
No 47
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.20 E-value=3.3e-11 Score=100.96 Aligned_cols=100 Identities=21% Similarity=0.360 Sum_probs=71.5
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~ 239 (300)
..+.||++.|+|||.+|+.+|+.|+++|++|++++..+... .++. ..+++++++++|+++.+.-. .+++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG~----~~vi~ 93 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATGN----KDVIT 93 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SSS----SSSB-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCCC----ccccC
Confidence 35899999999999999999999999999999999876432 2443 35799999999999988542 46688
Q ss_pred HHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 022233 240 KQVLSALGKEGVVINIGRGPI-IDEQELVRC 269 (300)
Q Consensus 240 ~~~l~~mk~ga~lIn~srg~~-vd~~aL~~a 269 (300)
.+.|.+||+|+++.|++.-.. +|-+.|.+.
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred HHHHHHhcCCeEEeccCcCceeEeecccccc
Confidence 999999999999999987654 566655543
No 48
>PLN02712 arogenate dehydrogenase
Probab=99.17 E-value=8e-11 Score=119.64 Aligned_cols=108 Identities=16% Similarity=0.342 Sum_probs=84.7
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhh-cCCEEEEecCCChhhhhcc
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAA-NCDILIICCGLTAETHHMI 238 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~-~aDvV~l~~p~~~~t~~li 238 (300)
|.++.+++|||||+|.||+.+|+.|+.+|++|.+|+++.... .+.....++++++. ++|+|++|+|. ..+..++
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi 442 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL 442 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence 667899999999999999999999999999999999874321 23334567888776 59999999994 6777777
Q ss_pred hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
.+-....||+|++++|++.+.-...+++.+.+..
T Consensus 443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 6554457999999999999985555555555544
No 49
>PLN02858 fructose-bisphosphate aldolase
Probab=99.13 E-value=1.6e-10 Score=125.31 Aligned_cols=111 Identities=23% Similarity=0.207 Sum_probs=95.2
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc--hHH
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMI--NKQ 241 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li--~~~ 241 (300)
.++|||||+|.||.+||++|...|++|.+||+++... .+.....++.+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 4789999999999999999999999999999986542 233446789999999999999999999998887 345
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHh--CCceEEEee
Q 022233 242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQ--GEIKGAGLD 281 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~--~~i~~a~LD 281 (300)
.++.+++|.++||+|+..+-..+.+.+.+++ ..+. .+|
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lD 443 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVD 443 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEE
Confidence 7888999999999999999999999999988 5553 455
No 50
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.13 E-value=1.4e-10 Score=106.84 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=88.8
Q ss_pred EEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHHHhcC
Q 022233 174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQVLSAL 246 (300)
Q Consensus 174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~l~~m 246 (300)
|||+|.||.+||++|...|++|.+|||++... .+.....++.+++++||+|++++|..++++.++. ..+.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999986532 2344456899999999999999998888777763 5677789
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233 247 GKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD 281 (300)
Q Consensus 247 k~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD 281 (300)
++|.++||++...+-....+.+.+++.++. .+|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 999999999998888889999998877664 366
No 51
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.10 E-value=2.7e-10 Score=111.34 Aligned_cols=115 Identities=22% Similarity=0.262 Sum_probs=93.6
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------C--CcccCCHHHHh---hcCCEEEEecCCChhhhhc
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------S--YPFYSNVCELA---ANCDILIICCGLTAETHHM 237 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~--~~~~~~l~e~l---~~aDvV~l~~p~~~~t~~l 237 (300)
.|||||+|.||+.||++|...|++|.+|||+++... + .....++++++ +++|+|++++|..+.++.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 389999999999999999999999999999865321 1 22345777766 4689999999998888888
Q ss_pred chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCC
Q 022233 238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286 (300)
Q Consensus 238 i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~E 286 (300)
+ ..+++.+++|.++||++....-+...+.+.+++..+.....=|...+
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 7 46778899999999999999999999999999888864444344443
No 52
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.05 E-value=9.5e-10 Score=102.20 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=70.0
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh-cC
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS-AL 246 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~-~m 246 (300)
.+++|+|||+|.||+++|++|...|++|.+|+|+.. .+++++++++|+|++++|. +..+.++. .+.. .+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~-~l~~~~~ 72 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAE-QVQALNL 72 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHH-HHHHhcC
Confidence 367999999999999999999999999999998753 4788999999999999997 56777763 3333 47
Q ss_pred CCCcEEEEcCCCccc
Q 022233 247 GKEGVVINIGRGPII 261 (300)
Q Consensus 247 k~ga~lIn~srg~~v 261 (300)
+++.++|++++|-..
T Consensus 73 ~~~~ivi~~s~gi~~ 87 (308)
T PRK14619 73 PPETIIVTATKGLDP 87 (308)
T ss_pred CCCcEEEEeCCcccC
Confidence 889999999885443
No 53
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.03 E-value=1.3e-09 Score=104.79 Aligned_cols=99 Identities=21% Similarity=0.322 Sum_probs=81.2
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~ 239 (300)
..+.|++|+|+|+|.||+.+|+.++++|++|+++++++... .++. ..+++++++.+|+|+.+.. +.++++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECCC----CHHHHH
Confidence 34789999999999999999999999999999998875432 2332 2357788999999998753 345688
Q ss_pred HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022233 240 KQVLSALGKEGVVINIGRGPI-IDEQELVR 268 (300)
Q Consensus 240 ~~~l~~mk~ga~lIn~srg~~-vd~~aL~~ 268 (300)
...+..||+|++++|+|++.+ +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 78777764
No 54
>PLN02256 arogenate dehydrogenase
Probab=99.02 E-value=7.5e-10 Score=102.72 Aligned_cols=105 Identities=18% Similarity=0.383 Sum_probs=79.7
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHh-hcCCEEEEecCCChhhhhcchHH
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELA-ANCDILIICCGLTAETHHMINKQ 241 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~ 241 (300)
-.+++|+|||+|.||+.+|+.|+..|++|.+++++.... .+.....++++++ .++|+|++|+|.. .+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence 357799999999999999999999999999998875321 1333456778876 4799999999954 566666433
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
....++++++++|++.+.-+-.+++.+.+..
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 2567899999999999765556666666543
No 55
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.96 E-value=1.3e-09 Score=105.60 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=91.0
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CCc----------------ccCCHHHHhhcCCEEEEec
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SYP----------------FYSNVCELAANCDILIICC 228 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~~----------------~~~~l~e~l~~aDvV~l~~ 228 (300)
.++|||||+|.||..+|..++. |++|++||+++.... +.. .+.+..+.+++||++++|+
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 3699999999999999999877 799999998865421 111 1233345789999999999
Q ss_pred CCC------hhhhhcc--hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC--CceEEEee----CCCCCCCCCC---
Q 022233 229 GLT------AETHHMI--NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG--EIKGAGLD----VFENEPDVPK--- 291 (300)
Q Consensus 229 p~~------~~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~--~i~~a~LD----V~~~EP~~~~--- 291 (300)
|.. ++...++ .+.+.+.+++|.++|+.|+-.+-..+.+...+.+. ++. + .| +|.+||..+.
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~-~-~~~~~~~~~PE~v~~G~a~ 162 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT-F-NQDFYVGYSPERINPGDKK 162 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC-c-CCCeeEeeCCCcCCCCccc
Confidence 966 3335555 34577889999999999999999888765554432 221 1 22 5778998653
Q ss_pred -CCCCCCCC
Q 022233 292 -ELXXXXXX 299 (300)
Q Consensus 292 -~L~~~~nv 299 (300)
.+.+.|.|
T Consensus 163 ~~~~~~~ri 171 (425)
T PRK15182 163 HRLTNIKKI 171 (425)
T ss_pred ccccCCCeE
Confidence 35555543
No 56
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.95 E-value=3.1e-09 Score=98.99 Aligned_cols=92 Identities=22% Similarity=0.293 Sum_probs=69.4
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCC-CCC-----CCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT-KKP-----SVSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~-~~~-----~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
|+|++|||||+|+||+++|+.|+.+|++|+++++. .+. ..+.. ..+..+++++||+|++++|...+ ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 57899999999999999999999999988765443 222 11333 34688899999999999996534 334556
Q ss_pred HHHhcCCCCcEEEEcCCCccc
Q 022233 241 QVLSALGKEGVVINIGRGPII 261 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~v 261 (300)
++...++++. +|.++-|=-+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH
Confidence 7778898886 7888877543
No 57
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.93 E-value=2.8e-09 Score=98.31 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=76.8
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C------------CcccCCHHHHhhcC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S------------YPFYSNVCELAANC 221 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~------------~~~~~~l~e~l~~a 221 (300)
++|||||+|.||..+|+.+...|++|++||+++.... + .....+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 5899999999999999999999999999998764310 0 01122233568999
Q ss_pred CEEEEecCCChhhhhcchHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHh
Q 022233 222 DILIICCGLTAETHHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~ 272 (300)
|+|+.++|..++.+..+.+++.+.++++++|+ |+|.-+ ...+.+.+..
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~ 133 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR 133 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC
Confidence 99999999999988888778888899999886 777664 3445555543
No 58
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.93 E-value=3.9e-09 Score=97.12 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=67.7
Q ss_pred ccccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||+|+|||.| .||++||.+|...|++|++|++.. .++.++.++||+|+++++..+. +....
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------~~l~e~~~~ADIVIsavg~~~~----v~~~~ 220 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------TDAKALCRQADIVVAAVGRPRL----IDADW 220 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhcCCEEEEecCChhc----ccHhh
Confidence 557899999999996 999999999999999999997653 2799999999999999986543 44443
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
+|+|+++||+|--.
T Consensus 221 ---ik~GaiVIDvgin~ 234 (301)
T PRK14194 221 ---LKPGAVVIDVGINR 234 (301)
T ss_pred ---ccCCcEEEEecccc
Confidence 89999999998544
No 59
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.92 E-value=3.2e-09 Score=97.65 Aligned_cols=110 Identities=13% Similarity=0.144 Sum_probs=82.6
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------------C-----------------CcccCCHHHHhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------------S-----------------YPFYSNVCELAAN 220 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------~-----------------~~~~~~l~e~l~~ 220 (300)
++|+|||+|.||..+|..+...|++|++||++++... + .....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 4899999999999999999999999999998754311 0 1124578889999
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVV-INIGRGPIIDEQELVRCLVQGEIKGAGLDVF 283 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l-In~srg~~vd~~aL~~aL~~~~i~~a~LDV~ 283 (300)
||+|+.|+|...+.+..+-.++.+.+++++++ +|+|..++ ..+.+.++. .-...++..|
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 99999999988877666656677788999876 78888665 445555533 2233566666
No 60
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.92 E-value=9.6e-10 Score=84.22 Aligned_cols=85 Identities=26% Similarity=0.390 Sum_probs=63.6
Q ss_pred EEEEEecChhHHHHHHHHHhCC---CEEE-EECCCCCCC------CCCcccC-CHHHHhhcCCEEEEecCCChhhhhcch
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFG---CSIS-YNSRTKKPS------VSYPFYS-NVCELAANCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g---~~V~-~~~~~~~~~------~~~~~~~-~l~e~l~~aDvV~l~~p~~~~t~~li~ 239 (300)
||||||+|+||+++++.+...| .+|. +++|+++.. .+..... +..|++++||+|++++|...-.. +.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~--v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPE--VL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHH--HH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHH--HH
Confidence 7999999999999999999999 8998 558876532 1333333 78999999999999998554333 44
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 022233 240 KQVLSALGKEGVVINIGRG 258 (300)
Q Consensus 240 ~~~l~~mk~ga~lIn~srg 258 (300)
++. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 444 667789999998754
No 61
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.89 E-value=3.6e-09 Score=88.43 Aligned_cols=85 Identities=18% Similarity=0.315 Sum_probs=61.4
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
|++|+|+|||||..|++.|.+|+..|++|.+-.|...+ ..++. ..+..|++++||+|++.+|+..+ ..++.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~~q-~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDEVQ-PEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HHHH-HHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChHHH-HHHHHH
Confidence 67999999999999999999999999999877665442 12433 46899999999999999995544 445568
Q ss_pred HHHhcCCCCcEEE
Q 022233 241 QVLSALGKEGVVI 253 (300)
Q Consensus 241 ~~l~~mk~ga~lI 253 (300)
++...||+|..++
T Consensus 80 ~I~p~l~~G~~L~ 92 (165)
T PF07991_consen 80 EIAPNLKPGATLV 92 (165)
T ss_dssp HHHHHS-TT-EEE
T ss_pred HHHhhCCCCCEEE
Confidence 8888999998865
No 62
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.88 E-value=8.7e-09 Score=93.50 Aligned_cols=98 Identities=19% Similarity=0.329 Sum_probs=75.7
Q ss_pred CEEEEEecChhHHHHHHHHHhCCC----EEEEE-CCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGC----SISYN-SRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~----~V~~~-~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~ 239 (300)
++|||||+|+||.+|++.|...|+ +|+++ +|++... .+.....+..+++++||+|++++| .+..+.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 589999999999999999998887 88888 8865432 244445678889999999999997 55566666
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233 240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLV 271 (300)
Q Consensus 240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 271 (300)
.++...++++.++|++.-| +..+.+.+.+.
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 3555677889999988665 46666666553
No 63
>PLN02712 arogenate dehydrogenase
Probab=98.88 E-value=4.6e-09 Score=106.94 Aligned_cols=104 Identities=18% Similarity=0.390 Sum_probs=76.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHh-hcCCEEEEecCCChhhhhcchH
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELA-ANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l-~~aDvV~l~~p~~~~t~~li~~ 240 (300)
.-+.++|||||+|.||+.+|+.|+.+|++|.+++++.... .+.....++++++ .+||+|++|+|. ..+..++..
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 3456799999999999999999999999999999874321 2344456788866 569999999995 467777765
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022233 241 QVLSALGKEGVVINIGRGPIIDEQELVRCL 270 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~vd~~aL~~aL 270 (300)
-.+..+++|++|+|+++-...--+++.+.+
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l 157 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYL 157 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence 434678999999999755532223444444
No 64
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.83 E-value=6.7e-09 Score=95.17 Aligned_cols=89 Identities=26% Similarity=0.386 Sum_probs=67.3
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY-PFYSNVCELAANCDILIICCGLTAETHHMINKQVL 243 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~-~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l 243 (300)
++|+|||+|.||+++|+.|+..|++|.+|+++++.. .+. ....+..+.+++||+|++++|.....+ + .+++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~-~-~~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLP-P-SEQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHH-H-HHHHH
Confidence 479999999999999999999999999999875431 121 112223356899999999999654433 3 35677
Q ss_pred hcCCCCcEEEEcCCCcc
Q 022233 244 SALGKEGVVINIGRGPI 260 (300)
Q Consensus 244 ~~mk~ga~lIn~srg~~ 260 (300)
+.++++++++|++.-..
T Consensus 79 ~~l~~~~ii~d~~Svk~ 95 (279)
T PRK07417 79 PALPPEAIVTDVGSVKA 95 (279)
T ss_pred HhCCCCcEEEeCcchHH
Confidence 77899999999987653
No 65
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.83 E-value=1.4e-08 Score=98.16 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=78.6
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CC--cccCCHHHHh---------------hcCCEEEEec
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SY--PFYSNVCELA---------------ANCDILIICC 228 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~--~~~~~l~e~l---------------~~aDvV~l~~ 228 (300)
++|+|||+|.||..+|..|+..|++|++||+++.... +. .....+++++ ++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 6899999999999999999999999999998765321 10 0123444443 3799999999
Q ss_pred CCC------hhhhhcc--hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 229 GLT------AETHHMI--NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 229 p~~------~~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
|.. ++...+. ...+.+.+++|.++|+.|.-.+-..+.+...+.+.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 964 1222222 25667889999999999999998888888877764
No 66
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.82 E-value=3e-08 Score=94.67 Aligned_cols=91 Identities=18% Similarity=0.279 Sum_probs=71.5
Q ss_pred CCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcC
Q 022233 168 GGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSAL 246 (300)
Q Consensus 168 ~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~m 246 (300)
..++|+||| +|.||+.+|+.|+..|+.|.+|+++.. .+.++++++||+|++|+|.... ..++ +++.. +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------~~~~~~~~~aDlVilavP~~~~-~~~~-~~l~~-l 165 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------DRAEDILADAGMVIVSVPIHLT-EEVI-ARLPP-L 165 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------hhHHHHHhcCCEEEEeCcHHHH-HHHH-HHHhC-C
Confidence 457999999 999999999999999999999998531 3677889999999999997754 4445 44555 8
Q ss_pred CCCcEEEEcCCCcccCHHHHHHH
Q 022233 247 GKEGVVINIGRGPIIDEQELVRC 269 (300)
Q Consensus 247 k~ga~lIn~srg~~vd~~aL~~a 269 (300)
++|++++|++.-...-..++.+.
T Consensus 166 ~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 166 PEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred CCCcEEEECCCccHHHHHHHHHh
Confidence 99999999987653333444443
No 67
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.80 E-value=5.8e-08 Score=90.68 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=87.0
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------------------------CCcccCCHHHHhhcCCEE
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------------------------SYPFYSNVCELAANCDIL 224 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------------------------~~~~~~~l~e~l~~aDvV 224 (300)
++|||||.|.||..+|..+...|++|.+||++++... ......++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 5899999999999999999999999999998754210 012346888999999999
Q ss_pred EEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh-CCceEEEeeCCCC
Q 022233 225 IICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ-GEIKGAGLDVFEN 285 (300)
Q Consensus 225 ~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~-~~i~~a~LDV~~~ 285 (300)
+-++|.+.+.+..+.+++.+.+++++ +|.+++.+ +...++.+.++. .++ .++=-|.+
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p~R~--~g~HffnP 145 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATHPERC--VVGHPFNP 145 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCCcccE--EEEecCCc
Confidence 99999999988888888889999998 55665554 577778887754 333 45544443
No 68
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.80 E-value=8.2e-09 Score=99.06 Aligned_cols=91 Identities=23% Similarity=0.267 Sum_probs=71.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC------CC-----CCCCcccCCHHHHhhcCCEEEEecCCChh
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK------KP-----SVSYPFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~------~~-----~~~~~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
..|.||+|+|||+|.+|++-|..|+..|++|.+--|.. +. ..+. ...+++|++++||+|++.+|++.
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~ADvVviLlPDt~- 109 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQADLVINLTPDKQ- 109 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhCCEEEEcCChHH-
Confidence 46999999999999999999999998899887433321 11 1233 34689999999999999999984
Q ss_pred hhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233 234 THHMINKQVLSALGKEGVVINIGRGP 259 (300)
Q Consensus 234 t~~li~~~~l~~mk~ga~lIn~srg~ 259 (300)
++.+.++.++.||+|+.|. .|.|=
T Consensus 110 -q~~v~~~i~p~LK~Ga~L~-fsHGF 133 (487)
T PRK05225 110 -HSDVVRAVQPLMKQGAALG-YSHGF 133 (487)
T ss_pred -HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence 6677899999999998864 44443
No 69
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.79 E-value=1.4e-08 Score=98.71 Aligned_cols=101 Identities=18% Similarity=0.315 Sum_probs=79.2
Q ss_pred CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
++|+||| +|.||+++|+.|+..|++|.++++++... .+.....++.+.+.+||+|++++|.. .+..++ +++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4899998 89999999999999999999999876432 13334457888999999999999964 445555 566
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
.+.++++++++|++.......+++.+.+..
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~ 108 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPE 108 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCC
Confidence 778999999999998765566666666543
No 70
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.79 E-value=3.3e-08 Score=91.04 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=71.8
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCCC----------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233 181 GSLVAKRLDAFGCSISYNSRTKKPS----------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250 (300)
Q Consensus 181 G~~~A~~l~~~g~~V~~~~~~~~~~----------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga 250 (300)
|++||++|...|+.|++||+++... .++....+..+++++||+|++++|..++++.++ ..+++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 8899999999999999998875421 245566789999999999999999998888887 56889999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHh
Q 022233 251 VVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 251 ~lIn~srg~~vd~~aL~~aL~~ 272 (300)
++||+|+.++ +.++..|+.
T Consensus 111 IVID~STIsP---~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCTVSP---VVLYYSLEK 129 (341)
T ss_pred EEEECCCCCH---HHHHHHHHH
Confidence 9999987654 455555544
No 71
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.78 E-value=2.1e-08 Score=92.41 Aligned_cols=110 Identities=19% Similarity=0.264 Sum_probs=79.6
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN 220 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~ 220 (300)
++|+|||.|.||..+|..+...|++|.+||++++... + .....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 5899999999999999999999999999998754210 1 11234554 5789
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQGEIKGAGLDVFE 284 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~ 284 (300)
||+|+.++|...+.+..+-+++.+.++++++|+ |+|.-.+ ..+.+.+... -...++-.|.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~-~r~~g~h~~~ 144 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRP-ERFIGIHFMN 144 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCc-ccEEEeeccC
Confidence 999999999887766555567778899999988 6665543 3577766432 1224555555
No 72
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=3.1e-08 Score=87.26 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=94.9
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHH---hhcCCEEEEecCCChhhhhcchHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCEL---AANCDILIICCGLTAETHHMINKQ 241 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~---l~~aDvV~l~~p~~~~t~~li~~~ 241 (300)
++||.||+|+||..++++|...|.+|++||+++... .++....+++++ +...-+|.+++|....|..+| .+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 579999999999999999999999999999987542 244455677775 456789999999987777776 57
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233 242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE 284 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~ 284 (300)
+.+.|.+|-++||-+-...-|.....+.|+++.| .-|||=.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEeccC
Confidence 8888999999999999999999999999999999 4578744
No 73
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.78 E-value=2.7e-08 Score=93.14 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=76.0
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----C--------C------CcccCCHHHHhhcCCEEEEecC
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----V--------S------YPFYSNVCELAANCDILIICCG 229 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~--------~------~~~~~~l~e~l~~aDvV~l~~p 229 (300)
.++|+|||+|.||..+|.+|...|++|.+|+|+++.. . + .....+++++++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4689999999999999999999999999999975421 0 1 1234578888999999999999
Q ss_pred CChhhhhcchHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHh
Q 022233 230 LTAETHHMINKQVLSALGKEGVVINIGRG-PIID--EQELVRCLVQ 272 (300)
Q Consensus 230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg-~~vd--~~aL~~aL~~ 272 (300)
... + ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 663 2 4556778999999999998 4333 5566676655
No 74
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.77 E-value=3.1e-08 Score=91.21 Aligned_cols=79 Identities=20% Similarity=0.342 Sum_probs=66.5
Q ss_pred ccccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEEC-CCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233 164 GSKLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNS-RTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQ 241 (300)
Q Consensus 164 g~~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~-~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~ 241 (300)
+.++.||+|+||| .|.||++||.+|...|+.|++|+ ++. ++++++++||+|+++++.... +.+.
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~~----v~~~ 218 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPEM----VKGD 218 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChhh----cchh
Confidence 4468999999999 99999999999999999999985 542 588999999999999987553 4333
Q ss_pred HHhcCCCCcEEEEcCCCc
Q 022233 242 VLSALGKEGVVINIGRGP 259 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg~ 259 (300)
. +++|+++||+|--.
T Consensus 219 ~---lk~GavVIDvGin~ 233 (296)
T PRK14188 219 W---IKPGATVIDVGINR 233 (296)
T ss_pred e---ecCCCEEEEcCCcc
Confidence 2 89999999998644
No 75
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.75 E-value=3.8e-08 Score=93.50 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=66.7
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHh-CCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDA-FGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS 244 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~-~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~ 244 (300)
+.-.+|+|||+ |.||+.+|+.|+. +|.+|+++|+... ...++++.+++||+|++|+|.... ..++ +++..
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~~~-~~~l-~~l~~ 73 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIRHT-AALI-EEYVA 73 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHHHH-HHHH-HHHhh
Confidence 34569999999 9999999999995 5889999998532 134678899999999999996544 3344 33333
Q ss_pred ---cCCCCcEEEEcCCCc
Q 022233 245 ---ALGKEGVVINIGRGP 259 (300)
Q Consensus 245 ---~mk~ga~lIn~srg~ 259 (300)
.++++++++|++.-.
T Consensus 74 ~~~~l~~~~iVtDVgSvK 91 (370)
T PRK08818 74 LAGGRAAGQLWLDVTSIK 91 (370)
T ss_pred hhcCCCCCeEEEECCCCc
Confidence 489999999998766
No 76
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.75 E-value=3.4e-08 Score=95.38 Aligned_cols=101 Identities=17% Similarity=0.278 Sum_probs=76.9
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CcccCCHHHHhhcCCEE
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------------------------S-YPFYSNVCELAANCDIL 224 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~l~~aDvV 224 (300)
++|+|||+|.||..+|..|...|++|++||+++.... + .....++.+++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 4799999999999999999999999999998754210 1 12335678889999999
Q ss_pred EEecCCChh---------hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233 225 IICCGLTAE---------THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLV 271 (300)
Q Consensus 225 ~l~~p~~~~---------t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 271 (300)
++++|.... ....+ ..+.+.+++|.++|+.|.-.+-..+.+.+.+.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~-~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~ 135 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA-ETIAKHLRKGATVVLESTVPPGTTEEVVKPIL 135 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH-HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHH
Confidence 999996532 22222 45667789999999999877777777765443
No 77
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.75 E-value=3.7e-08 Score=97.38 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=82.4
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CcccCCHHHHhhcCCEE
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------------------------S-YPFYSNVCELAANCDIL 224 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~l~~aDvV 224 (300)
++|||||+|.||..+|.++...|++|.+||+++.... + .....++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 5899999999999999999999999999998754311 1 23456888999999999
Q ss_pred EEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 022233 225 IICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN 285 (300)
Q Consensus 225 ~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~ 285 (300)
+.++|...+.+..+-+++.+.++++++ |+++..++ ....+.+.+..... ..++-+-+
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~~~r--~~~~hP~n 141 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTHPER--LFVAHPYN 141 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCCcce--EEEEecCC
Confidence 999999887776555556566777764 56666664 35577777754332 44565544
No 78
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.74 E-value=2.3e-08 Score=91.48 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=77.0
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCC----EEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGC----SISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~----~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li 238 (300)
.++|||||+|+||.+|++.|...|+ +|++++|+.+.. .+.....+..+++++||+|++++|. ...+.++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH
Confidence 3589999999999999999998774 699999876532 2333446788899999999999994 6666666
Q ss_pred hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLV 271 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 271 (300)
+++...++++.++|++.-| ++.+.|.+.+.
T Consensus 81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 4555667888999999888 56677777774
No 79
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.74 E-value=3.2e-08 Score=90.63 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=74.2
Q ss_pred CCEEEEEecChhHHHHHHHHHhCC----CEEEEECCCCCCC-------CCCcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTKKPS-------VSYPFYSNVCELAANCDILIICCGLTAETHHM 237 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g----~~V~~~~~~~~~~-------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l 237 (300)
+++|||||+|+||.+||+.|...| .+|.+++|+.... .+.....+..+++++||+|++++|... ...+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~-~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD-VAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH-HHHH
Confidence 579999999999999999999887 6889999865321 134445678889999999999999544 3434
Q ss_pred chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233 238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLV 271 (300)
Q Consensus 238 i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 271 (300)
+ ..+...++++.++|++.-|- ..+.+.+.+.
T Consensus 82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 4 45556678899999986553 5566666554
No 80
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.72 E-value=2.8e-08 Score=92.22 Aligned_cols=89 Identities=21% Similarity=0.412 Sum_probs=68.3
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCC-----CCC--cccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPS-----VSY--PFYSNVCELAANCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~-----~~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~ 239 (300)
.++|+|||+|.||..+|+.|+..|. +|.+|++++... .+. ....++++.+++||+|++++|... +..+ .
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v-~ 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAV-A 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHH-H
Confidence 4689999999999999999998885 899999876421 121 123567888999999999999643 3333 3
Q ss_pred HHHHhcCCCCcEEEEcCCCc
Q 022233 240 KQVLSALGKEGVVINIGRGP 259 (300)
Q Consensus 240 ~~~l~~mk~ga~lIn~srg~ 259 (300)
+++.+.++++.++++++...
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k 103 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVK 103 (307)
T ss_pred HHHHhhCCCCCEEEeCccch
Confidence 55667789999999997654
No 81
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.72 E-value=2e-08 Score=95.64 Aligned_cols=96 Identities=15% Similarity=0.268 Sum_probs=74.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCC------cccCCHHHHhhcCCEEEEecCCC-h
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSY------PFYSNVCELAANCDILIICCGLT-A 232 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~------~~~~~l~e~l~~aDvV~l~~p~~-~ 232 (300)
.+.+.+|.|+|.|.+|+.+++.++.+|++|.++|++.... .+. ....++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 4678899999999999999999999999999999875321 111 11135677889999999998652 2
Q ss_pred hhhhcchHHHHhcCCCCcEEEEcC--CCccc
Q 022233 233 ETHHMINKQVLSALGKEGVVINIG--RGPII 261 (300)
Q Consensus 233 ~t~~li~~~~l~~mk~ga~lIn~s--rg~~v 261 (300)
.+..+++++.++.||+++++||++ .|+.+
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~d~GG~~ 274 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAIDQGGCV 274 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEecCCCCCc
Confidence 345678999999999999999987 44443
No 82
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.72 E-value=5.7e-08 Score=80.66 Aligned_cols=105 Identities=26% Similarity=0.292 Sum_probs=78.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCCC------CC----cccCCHHHHhhcCCEEEEecCCChh-
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPSV------SY----PFYSNVCELAANCDILIICCGLTAE- 233 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~------~~----~~~~~l~e~l~~aDvV~l~~p~~~~- 233 (300)
++.+++++|+|+|.||+.+++.+...| .+|.+++++.+... +. ....+++++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 366889999999999999999999886 68999998764321 11 1245677888999999999998764
Q ss_pred hhh-cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233 234 THH-MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI 275 (300)
Q Consensus 234 t~~-li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i 275 (300)
... .+.. ..++++.+++|++..+.. + .+.+.+++.++
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~ 133 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALGA 133 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCC
Confidence 222 2332 236899999999887544 3 88888877655
No 83
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.71 E-value=9.7e-09 Score=83.20 Aligned_cols=103 Identities=18% Similarity=0.329 Sum_probs=62.3
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
...+|+|||.|++|..+++.|...|+.|. +|+|+.... .+.....+++|++.++|++++++|++.-.. +.+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~--va~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAE--VAE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHH--HHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHH--HHH
Confidence 35699999999999999999999999986 457765321 123345678899999999999999875433 445
Q ss_pred HHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233 241 QVLSA--LGKEGVVINIGRGPIIDEQELVRCLVQGE 274 (300)
Q Consensus 241 ~~l~~--mk~ga~lIn~srg~~vd~~aL~~aL~~~~ 274 (300)
++... .++|.+++-|| |. ...+-|..+-+.|-
T Consensus 87 ~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGA 120 (127)
T ss_dssp HHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-
T ss_pred HHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCC
Confidence 55554 78999999995 33 33334444444443
No 84
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.71 E-value=4.1e-08 Score=93.25 Aligned_cols=97 Identities=20% Similarity=0.238 Sum_probs=71.7
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------CC--cccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------SY--PFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
++|+|||+|.||+++|+.|+..|++|.++++++.... +. ....++++++++||+|++++|.. .+..++ +
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl-~ 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALL-A 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHH-H
Confidence 4799999999999999999999998887776654311 11 12346788899999999999974 556665 3
Q ss_pred HHHh-cCCCCcEEEEcCCCcccCHHHHHH
Q 022233 241 QVLS-ALGKEGVVINIGRGPIIDEQELVR 268 (300)
Q Consensus 241 ~~l~-~mk~ga~lIn~srg~~vd~~aL~~ 268 (300)
++.. .++++++++|++.-+.--.+++.+
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~ 107 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEA 107 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHH
Confidence 4444 488999999998877544444433
No 85
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.70 E-value=8.3e-08 Score=81.55 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=69.6
Q ss_pred cccCCCEEEEEecChh-HHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233 165 SKLGGKRVGIVGLGSI-GSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL 243 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l 243 (300)
.++.|++|.|||.|.| |..+|+.|...|.+|++.+|+. .++.+.+++||+|+.+++.. + +|.++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~---~-ii~~~~- 105 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP---G-LVKGDM- 105 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC---c-eecHHH-
Confidence 3588999999999996 8889999999999999888762 46889999999999998743 2 677764
Q ss_pred hcCCCCcEEEEcCCCcccC
Q 022233 244 SALGKEGVVINIGRGPIID 262 (300)
Q Consensus 244 ~~mk~ga~lIn~srg~~vd 262 (300)
++++.++||++...-+|
T Consensus 106 --~~~~~viIDla~prdvd 122 (168)
T cd01080 106 --VKPGAVVIDVGINRVPD 122 (168)
T ss_pred --ccCCeEEEEccCCCccc
Confidence 57899999999888766
No 86
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.69 E-value=4.8e-08 Score=96.74 Aligned_cols=114 Identities=17% Similarity=0.267 Sum_probs=86.4
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN 220 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~ 220 (300)
++|||||+|.||+.||..+...|++|++||++++... + .....++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 5899999999999999999999999999998765311 1 122356655 579
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVV-INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l-In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~ 288 (300)
||+|+-++|.+.+.+..+-.++-..++++++| +|+|.-++- ++..++....- ..++..|.+-|.
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r-~~G~hff~Pa~v 151 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPER-VAGLHFFNPVPL 151 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCccc-EEEEeecCCccc
Confidence 99999999999998887776666667899998 599887763 56666654221 366777775553
No 87
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.69 E-value=6.9e-08 Score=88.30 Aligned_cols=81 Identities=19% Similarity=0.332 Sum_probs=68.7
Q ss_pred ccccCCCEEEEEecChh-HHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGSI-GSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~I-G~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.|+++.|||.|.+ |+++|..|...|++|+++... ..++.+.+++||+|+++++ +.++++.
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~-- 217 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTA-- 217 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCH--
Confidence 55689999999999999 999999999999999876532 2478899999999999998 3467876
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 022233 243 LSALGKEGVVINIGRGPI 260 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~ 260 (300)
+.+|+|+++||+|.-.+
T Consensus 218 -~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 218 -DMVKPGATVIDVGMNRD 234 (285)
T ss_pred -HHcCCCCEEEEcccccc
Confidence 55899999999996553
No 88
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.68 E-value=4.4e-08 Score=89.54 Aligned_cols=95 Identities=17% Similarity=0.382 Sum_probs=67.8
Q ss_pred CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCC-----CCCc-ccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPS-----VSYP-FYSNVCELAANCDILIICCGLTAETHHMINKQ 241 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~-----~~~~-~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~ 241 (300)
++|+|||+|.||+++|+.|+..|. +|++|++++... .+.. ...+++++. +||+|++++|.....+ ++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~-~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIE-IL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHH-HH-HH
Confidence 479999999999999999998885 788999875431 1221 234667765 5999999999655433 33 45
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
+.+ +++++++++++.- ...+.+.+.+
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 666 8999999997653 3445555543
No 89
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.68 E-value=1.1e-07 Score=83.00 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=81.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CCcccCCHHHHhh-cCCEEEEecCCChhhhh
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SYPFYSNVCELAA-NCDILIICCGLTAETHH 236 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~~~~~~l~e~l~-~aDvV~l~~p~~~~t~~ 236 (300)
+.+++||+++|+|+|+||+.+|++|..+|++|+++|++.+... +... .+.++++. +||+++.+.. .+
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~-v~~~~l~~~~~Dv~vp~A~-----~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATV-VAPEEIYSVDADVFAPCAL-----GG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEE-EcchhhccccCCEEEeccc-----cc
Confidence 4468899999999999999999999999999999998754311 2222 23456654 7999986654 35
Q ss_pred cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
+|+++.++.|+ ..+++.-+-+.+-| ..-.+.|++++|.
T Consensus 97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 78899999997 45888998888876 5667788888774
No 90
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.67 E-value=7.7e-08 Score=87.93 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=78.1
Q ss_pred CCEEEEEecChhHHHHHHHHHh--CCCEEE-EECCCCCCCC------C-CcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDA--FGCSIS-YNSRTKKPSV------S-YPFYSNVCELAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~--~g~~V~-~~~~~~~~~~------~-~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li 238 (300)
.++|||||+|.||+.+++.+.. .++++. +++++++... + ...+.++++++.++|+|++|+|.....+ +
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e--~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRA--I 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHH--H
Confidence 4799999999999999999986 478875 6787654321 2 2346789999999999999999654322 2
Q ss_pred hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
. ...++.|.-++..++|.+.+.++|.++.++++..
T Consensus 84 ~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 84 V---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred H---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 2 3334667667778899998999999999887654
No 91
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.66 E-value=8.4e-08 Score=87.70 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=66.5
Q ss_pred ccccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||+|+|||. |.||++||.+|...|++|++|... ..++.+.+++||+|+++++.... +....
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~~~~----v~~~~ 219 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGRGHF----VTKEF 219 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCcccc----CCHHH
Confidence 55789999999999 999999999999999999988322 13789999999999999986543 44433
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
+|+|+++||+|--.
T Consensus 220 ---ik~GavVIDvgin~ 233 (284)
T PRK14179 220 ---VKEGAVVIDVGMNR 233 (284)
T ss_pred ---ccCCcEEEEeccee
Confidence 89999999998544
No 92
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.65 E-value=7.1e-08 Score=88.36 Aligned_cols=102 Identities=24% Similarity=0.341 Sum_probs=72.4
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC--C-----CCCcc--cCCH-HHHhhcCCEEEEecCCChhhhhcc
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP--S-----VSYPF--YSNV-CELAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~--~-----~~~~~--~~~l-~e~l~~aDvV~l~~p~~~~t~~li 238 (300)
.++|+|+|+|.||+.+|+.++..|+.+.++++.... . .+... ..+. .+.+..||+|++++|-... ..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~-~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEAT-EEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHH-HHHH
Confidence 469999999999999999999999977555443332 1 12211 1233 6778889999999996544 4444
Q ss_pred hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
+++...+|+|++++|++.-.----++..+.+.+
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~ 114 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPG 114 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccC
Confidence 566668999999999988775555555555433
No 93
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.65 E-value=6.6e-08 Score=89.04 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=84.4
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------CC-------------cccCCHHHHhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------SY-------------PFYSNVCELAAN 220 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~~-------------~~~~~l~e~l~~ 220 (300)
++|||||.|.||..+|..+...|++|+.||++++... +. ....++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 3899999999999999999999999999998765311 10 123466 55899
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233 221 CDILIICCGLTAETHHMINKQVLSAL-GKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~m-k~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~ 288 (300)
||+|+-++|.+.+.+..+-..+-+.+ ++++++++.+.+-.+.+-+ .+++...- ..++..|.+-|.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la--~~~~~~~r-~~g~hf~~P~~~ 150 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLA--AATKRPGR-VLGLHFFNPVPV 150 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH--hhcCCCcc-EEEEecCCCccc
Confidence 99999999999998887766655555 8999998887776555444 44433222 366777775443
No 94
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.65 E-value=1.4e-07 Score=86.92 Aligned_cols=114 Identities=16% Similarity=0.233 Sum_probs=81.8
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------------------CC-------------cccCCHHHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------------------SY-------------PFYSNVCEL 217 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~e~ 217 (300)
++|+|||.|.||..+|..+...|++|+++|++++... +. ....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 5899999999999999999999999999998754210 00 112234 56
Q ss_pred hhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233 218 AANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287 (300)
Q Consensus 218 l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP 287 (300)
+++||+|+.++|...+...-+-+++-+.++++++|++...| +....+.+.+... -+..++.-|.+-|
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~~P~~ 149 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWFNPAP 149 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecCCCcc
Confidence 79999999999988765555555666778899999877766 4556777777542 2235566555444
No 95
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.65 E-value=5.4e-08 Score=90.53 Aligned_cols=90 Identities=17% Similarity=0.281 Sum_probs=69.9
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----C--------------CCcccCCHHHHhhcCCEEEEecCC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----V--------------SYPFYSNVCELAANCDILIICCGL 230 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~--------------~~~~~~~l~e~l~~aDvV~l~~p~ 230 (300)
++|+|||+|.||..+|..|...|++|.+|++++... . +.....++++.+++||+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 489999999999999999999999999999875321 0 122345778889999999999996
Q ss_pred ChhhhhcchHHHHhcCCCCcEEEEcCCCccc
Q 022233 231 TAETHHMINKQVLSALGKEGVVINIGRGPII 261 (300)
Q Consensus 231 ~~~t~~li~~~~l~~mk~ga~lIn~srg~~v 261 (300)
..++.++ ..+.+.++++.++|+++.|--.
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 4566555 4566677899999999865443
No 96
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.64 E-value=1.3e-07 Score=82.30 Aligned_cols=86 Identities=23% Similarity=0.304 Sum_probs=67.3
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQ 241 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~ 241 (300)
++++|+|.|+||..+|+++...|++|.+-+++..... ......+.+++.+.+|+|++++|...... +.++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~--v~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD--VLAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh--HHHH
Confidence 5899999999999999999999999988766544311 11234578899999999999999766544 4566
Q ss_pred HHhcCCCCcEEEEcCCC
Q 022233 242 VLSALGKEGVVINIGRG 258 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg 258 (300)
+...+. |.++||+.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 776666 8899998754
No 97
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.63 E-value=8.8e-08 Score=93.54 Aligned_cols=107 Identities=20% Similarity=0.226 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhCCCEEEEECCCCCCCC----------CCcccCCHHHHhhc---CCEEEEecCCChhhhhcchHHHHhcC
Q 022233 180 IGSLVAKRLDAFGCSISYNSRTKKPSV----------SYPFYSNVCELAAN---CDILIICCGLTAETHHMINKQVLSAL 246 (300)
Q Consensus 180 IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~e~l~~---aDvV~l~~p~~~~t~~li~~~~l~~m 246 (300)
||+.||++|...|++|.+|||+++... +.....+++|+++. +|+|++++|..+.++.++ ..+++.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 799999999999999999999875421 24456799998875 899999999999999988 4688999
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233 247 GKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287 (300)
Q Consensus 247 k~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP 287 (300)
.+|.++||++....-|...+.+.+++.++.....=|...++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999999999999999999988755544555443
No 98
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.63 E-value=1e-07 Score=94.20 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=85.2
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN 220 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~ 220 (300)
++|||||.|.||+.||..+...|++|++||++++... + .....++++ +.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 5899999999999999999999999999998854311 1 112456655 579
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~ 288 (300)
||+|+.++|...+.+..+-.++-+.++++++|. |+|.-++ ..+.+++... -...++..|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~p-~r~~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLARP-ERVAGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCcc-cceEEEeccCcccc
Confidence 999999999998888777666667788888766 7766554 4566766432 33577887776554
No 99
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.61 E-value=1.8e-07 Score=89.66 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=82.3
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------------------CCccc--CCHHHHhhcCCEEEE
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------------------SYPFY--SNVCELAANCDILII 226 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------------------~~~~~--~~l~e~l~~aDvV~l 226 (300)
++|+|||+|.||..+|..++ .|++|++||++.+... ..... .+..+++++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 47999999999999997766 4999999998764310 01111 235677899999999
Q ss_pred ecCCC----------hhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCC
Q 022233 227 CCGLT----------AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK 291 (300)
Q Consensus 227 ~~p~~----------~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~ 291 (300)
++|.. ...+..+ +.+.. +++|.++|+.|+-.+=-.+.+.+.+.+..+. |.+|.+.+.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G 146 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREG 146 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCC
Confidence 99965 2222222 34444 7999999999999999999999888765442 477776543
No 100
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.60 E-value=7.9e-08 Score=80.69 Aligned_cols=87 Identities=21% Similarity=0.332 Sum_probs=65.0
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-------------C------CCcccCCHHHHhhcCCEEEEecCCC
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-------------V------SYPFYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------------~------~~~~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
+|+|+|.|++|.++|..|...|.+|..|.|+++.. . ......++++++++||+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 69999999999999999999999999999875320 0 1123468999999999999999955
Q ss_pred hhhhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233 232 AETHHMINKQVLSALGKEGVVINIGRGP 259 (300)
Q Consensus 232 ~~t~~li~~~~l~~mk~ga~lIn~srg~ 259 (300)
.. +. +-+++...++++..+|++..|=
T Consensus 81 ~~-~~-~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 AH-RE-VLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp GH-HH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred HH-HH-HHHHHhhccCCCCEEEEecCCc
Confidence 43 33 3467777789999999998764
No 101
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.59 E-value=1.2e-07 Score=87.95 Aligned_cols=98 Identities=23% Similarity=0.353 Sum_probs=81.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
-+.||++.|.|||..|+-+|.++++.|++|+++...+-.+ .++. ..+++|+...+|+++.+.- ++++|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~-V~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE-EEEhHHhhhcCCEEEEccC----CcCccCH
Confidence 3799999999999999999999999999999987665432 2333 4579999999999998863 4678999
Q ss_pred HHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022233 241 QVLSALGKEGVVINIGRGPI-IDEQELVR 268 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~-vd~~aL~~ 268 (300)
+.|..||+|+++-|.+.=.+ +|-..|.+
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHH
Confidence 99999999999999996655 56666653
No 102
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.59 E-value=1.5e-07 Score=87.46 Aligned_cols=101 Identities=11% Similarity=0.168 Sum_probs=71.3
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------C--------------CcccCCHHHHhhcCCEEE
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------S--------------YPFYSNVCELAANCDILI 225 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~--------------~~~~~~l~e~l~~aDvV~ 225 (300)
++|+|||+|.||..+|..|...|++|++++++.+... + .....++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5899999999999999999999999999998653210 0 112356778899999999
Q ss_pred EecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 226 ICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 226 l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
+++|...+...-+-+++-..++++++++....| +....+.+.+..
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~ 129 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR 129 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence 999987654333334444556777766533333 345677777643
No 103
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.58 E-value=5.2e-07 Score=83.00 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=77.8
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------------------------------CCcccCCHHHHhh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------------------------------SYPFYSNVCELAA 219 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------------------------~~~~~~~l~e~l~ 219 (300)
++|+|||.|.||..+|..++..|.+|..||++.+... ......+++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999998753210 0112467888899
Q ss_pred cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD 281 (300)
Q Consensus 220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD 281 (300)
.||+|+.++|...+...-+-+++.+.+++++++++.+.+- ....+.+.+.... ...++-
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~-r~vg~H 142 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPE-KFLALH 142 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcc-cEEEEc
Confidence 9999999999776655555566777788898885433332 4456666664332 234443
No 104
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.56 E-value=1.9e-07 Score=84.52 Aligned_cols=98 Identities=13% Similarity=0.230 Sum_probs=73.1
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCE---EEEECCCCCCC------C-CCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCS---ISYNSRTKKPS------V-SYPFYSNVCELAANCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~---V~~~~~~~~~~------~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~ 239 (300)
++|||||+|+||+++++.|...|.. +.+++|+.+.. . +.....+.+++++++|+|++++| .+....++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 4799999999999999999987753 57888875432 1 23345688889999999999999 444555553
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
+ +. ++++.++|.++ .-+..+.|.+.+..+
T Consensus 80 -~-l~-~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 80 -A-LR-FRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred -H-hc-cCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 2 22 57889999987 347888888887653
No 105
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.56 E-value=4e-07 Score=83.49 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=74.5
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN 220 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~ 220 (300)
++|+|||.|.||..+|..+...|++|+++|++++... + .....+.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 4899999999999999999999999999997654320 1 01123444 4799
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
||+|+.++|.+.+.+.-+-+++.+.++++++++....| +....|.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999987776655556677788999888444344 556688888744
No 106
>PRK07680 late competence protein ComER; Validated
Probab=98.56 E-value=2e-07 Score=85.11 Aligned_cols=98 Identities=16% Similarity=0.362 Sum_probs=74.0
Q ss_pred CEEEEEecChhHHHHHHHHHhCCC----EEEEECCCCCCCC-------CCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGC----SISYNSRTKKPSV-------SYPFYSNVCELAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~----~V~~~~~~~~~~~-------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li 238 (300)
++|+|||+|.||+.+++.|...|. +|.+++|+.+... +.....+..+++.++|+|++++|. .....++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence 479999999999999999998883 7899999764311 233456788889999999999973 3345554
Q ss_pred hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLV 271 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 271 (300)
+++...++++.++|+++-| +..+.|.+.+.
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4555678888999999854 37777776654
No 107
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.55 E-value=1.6e-07 Score=87.24 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=76.7
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CcccCCHHHHhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------------VS-------------YPFYSNVCELAAN 220 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------------~~-------------~~~~~~l~e~l~~ 220 (300)
++|+|||+|.||..+|..|+..|++|++||+++... .+ .....++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 479999999999999999999999999999975321 11 1234678889999
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN 285 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~ 285 (300)
||+|+.++|...+....+-.++-+..++..+ |..+... .....+.+.+..... ...|-|-+
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~i-i~ssts~-~~~~~la~~~~~~~~--~~~~hp~~ 143 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAI-LASSTSA-LLASAFTEHLAGRER--CLVAHPIN 143 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcce-EEEeCCC-CCHHHHHHhcCCccc--EEEEecCC
Confidence 9999999998766554444444344455544 4444443 456678887755432 33454443
No 108
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.54 E-value=5.1e-07 Score=82.75 Aligned_cols=102 Identities=21% Similarity=0.366 Sum_probs=74.4
Q ss_pred CEEEEEecChhHHHHHHHHHhCC----CEEEEECCCCCCC-------C-CCcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTKKPS-------V-SYPFYSNVCELAANCDILIICCGLTAETHHM 237 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g----~~V~~~~~~~~~~-------~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l 237 (300)
++|+|||+|+||+++++.|...| .+|.+++++.... . ......+..++++++|+|++++|. .....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 47999999999999999999877 6888888754221 1 112245778889999999999994 334443
Q ss_pred chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233 238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI 275 (300)
Q Consensus 238 i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i 275 (300)
+ .++...++++..+|.+.-| +..+.|.+.+...++
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v 115 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV 115 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence 3 4444567788899999888 677788887743344
No 109
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.50 E-value=8.8e-08 Score=78.45 Aligned_cols=94 Identities=28% Similarity=0.335 Sum_probs=70.6
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCCCCC------C-----CcccCCHHHHhhcCCEEEEecCCChh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPSV------S-----YPFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~~~~------~-----~~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
+++|+++.|||.|.+|+.++..|...|++ |++++|+.+... + ...+.++.+.+.++|+|+.++|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999999999995 999999865321 1 12345677789999999999886543
Q ss_pred hhhcchHHHHhcCCCCc-EEEEcCCCcccC
Q 022233 234 THHMINKQVLSALGKEG-VVINIGRGPIID 262 (300)
Q Consensus 234 t~~li~~~~l~~mk~ga-~lIn~srg~~vd 262 (300)
.+.++.++..++.. +++|.+...-|+
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred ---ccCHHHHHHHHhhhhceeccccCCCCC
Confidence 67888877665543 999998765554
No 110
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.47 E-value=6.6e-07 Score=81.99 Aligned_cols=80 Identities=21% Similarity=0.408 Sum_probs=67.1
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+..+.|+++.|||.|. +|+.+|..|...|++|+++.++. .++.+.+++||+|+.+++. .++|.++.
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~ 219 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV 219 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH
Confidence 4468999999999999 99999999999999998876532 3688999999999999975 23576654
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
+|+|+++||+|--.
T Consensus 220 ---vk~gavVIDvGi~~ 233 (286)
T PRK14175 220 ---VKEGAVIIDVGNTP 233 (286)
T ss_pred ---cCCCcEEEEcCCCc
Confidence 68999999998644
No 111
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.40 E-value=1.1e-06 Score=90.84 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=74.8
Q ss_pred CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCC-----CCCc--ccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPS-----VSYP--FYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~-----~~~~--~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
++|+|||+|.||.++|+.++..| .+|++|+++.... .+.. ...+++++++++|+|++++|.. .+..++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999888 4899999876532 1221 2346788899999999999964 444444 3
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 241 QVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
.+.+.++++.+++|++.....-.+++.+.+..
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~ 113 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGE 113 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccc
Confidence 45566788999999997664445556555543
No 112
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.39 E-value=3.1e-07 Score=80.99 Aligned_cols=127 Identities=15% Similarity=0.151 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHH--HhCCCEEE-
Q 022233 120 EDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRL--DAFGCSIS- 196 (300)
Q Consensus 120 ~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l--~~~g~~V~- 196 (300)
...++|.+..++...|++. .|. ..++|+|||+|.+|+.+++.+ ...|+++.
T Consensus 61 ~~~~gy~v~~l~~~~~~~l---------~~~-----------------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivg 114 (213)
T PRK05472 61 KRGVGYNVEELLEFIEKIL---------GLD-----------------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVA 114 (213)
T ss_pred CCCCCeeHHHHHHHHHHHh---------CCC-----------------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEE
Confidence 3444688888888777653 111 245899999999999999863 35788876
Q ss_pred EECCCCCCCC----C--CcccCCHHHHhhc--CCEEEEecCCChhhh---hcchHHHHhcCCCCcEEEEcCCCcccCHHH
Q 022233 197 YNSRTKKPSV----S--YPFYSNVCELAAN--CDILIICCGLTAETH---HMINKQVLSALGKEGVVINIGRGPIIDEQE 265 (300)
Q Consensus 197 ~~~~~~~~~~----~--~~~~~~l~e~l~~--aDvV~l~~p~~~~t~---~li~~~~l~~mk~ga~lIn~srg~~vd~~a 265 (300)
++|+++.... + .....++++++++ .|.|++++|.+...+ .+.......-|...++.+|+.+|.+|+.++
T Consensus 115 v~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~ 194 (213)
T PRK05472 115 AFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVD 194 (213)
T ss_pred EEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEec
Confidence 4666543221 1 1123467788765 999999999876532 222233344466678889999999999999
Q ss_pred HHHHHHh
Q 022233 266 LVRCLVQ 272 (300)
Q Consensus 266 L~~aL~~ 272 (300)
|..+|..
T Consensus 195 l~~~l~~ 201 (213)
T PRK05472 195 LTVELQT 201 (213)
T ss_pred hHHHHHH
Confidence 9999864
No 113
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.37 E-value=2e-06 Score=81.20 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=72.3
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCC----------CCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233 181 GSLVAKRLDAFGCSISYNSRTKKP----------SVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250 (300)
Q Consensus 181 G~~~A~~l~~~g~~V~~~~~~~~~----------~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga 250 (300)
|..||.+|...|++|++||++... ..+.....+..+++++||+|++++|....++.++ ..+.+.+++|.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 789999999999999999987641 1234445678889999999999999776577777 46788899999
Q ss_pred EEEEcCCCcccCH-HHHHHHHH
Q 022233 251 VVINIGRGPIIDE-QELVRCLV 271 (300)
Q Consensus 251 ~lIn~srg~~vd~-~aL~~aL~ 271 (300)
++||++.++.... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999987765 66666664
No 114
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.37 E-value=1.6e-06 Score=78.61 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=68.9
Q ss_pred CEEEEEecChhHHHHHHHHHhCC---CEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFG---CSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g---~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
++|+|||+|.||+.+++.+...| .+|.+++|+.+.. .+.....+.++++.++|+|++++|.. ..+.++ +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~-~ 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVL-S 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHH-H
Confidence 58999999999999999999888 6889999976432 13334567788899999999999843 344333 3
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233 241 QVLSALGKEGVVINIGRGPIIDEQELVRCLV 271 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 271 (300)
.+...+ +.++|.+.-|- ..+.+.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 333333 46788886654 5666776664
No 115
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.36 E-value=7.5e-07 Score=78.78 Aligned_cols=89 Identities=19% Similarity=0.195 Sum_probs=63.6
Q ss_pred CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC-------------CC---cccCCHHHHhhcCCEEEEecCCCh
Q 022233 170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------------SY---PFYSNVCELAANCDILIICCGLTA 232 (300)
Q Consensus 170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------------~~---~~~~~l~e~l~~aDvV~l~~p~~~ 232 (300)
++|+||| .|+||+.+|+.|...|.+|.+++|+++... +. ....+..+.++++|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 4899997 899999999999999999999988764311 11 012366788999999999999543
Q ss_pred hhhhcchHHHHhcCCCCcEEEEcCCCccc
Q 022233 233 ETHHMINKQVLSALGKEGVVINIGRGPII 261 (300)
Q Consensus 233 ~t~~li~~~~l~~mk~ga~lIn~srg~~v 261 (300)
. ..++ +++...++ +.++|+++-|--.
T Consensus 81 ~-~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 81 V-LKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred H-HHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 3 3333 33333444 5899999777433
No 116
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.36 E-value=8.8e-07 Score=76.47 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=68.4
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------------CCC-------------CcccCCHHHHhhcCCEE
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------------SVS-------------YPFYSNVCELAANCDIL 224 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------------~~~-------------~~~~~~l~e~l~~aDvV 224 (300)
|+|+|||+|.+|..+|..|+..|++|+++|.+++. +.+ .....+.++.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 68999999999999999999999999999986542 000 12235678889999999
Q ss_pred EEecCCChhhhh------cc--hHHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHh
Q 022233 225 IICCGLTAETHH------MI--NKQVLSALGKEGVVINIGRGPIIDEQELV-RCLVQ 272 (300)
Q Consensus 225 ~l~~p~~~~t~~------li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~-~aL~~ 272 (300)
++|+|......+ +. -+.+.+.++++.++|.-|+-.+=-.+.+. ..|++
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~ 137 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK 137 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence 999984322221 11 24566778999999999999987777444 44443
No 117
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.33 E-value=9.1e-07 Score=80.52 Aligned_cols=90 Identities=20% Similarity=0.340 Sum_probs=75.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
.+.||.+.|.|||..|+..|+.|++||.+|++....+-.+ .++. ..+++|+.++.|+++.+. -.+++|..
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtT----Gc~dii~~ 285 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTT----GCKDIITG 285 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEcc----CCcchhhH
Confidence 4789999999999999999999999999999987655332 2333 468999999999998875 34677899
Q ss_pred HHHhcCCCCcEEEEcCCCcc
Q 022233 241 QVLSALGKEGVVINIGRGPI 260 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~ 260 (300)
+.|.+||.++++.|++.-.+
T Consensus 286 ~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 286 EHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHHhCcCCcEEeccccccc
Confidence 99999999999999986554
No 118
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.31 E-value=3e-06 Score=76.97 Aligned_cols=97 Identities=26% Similarity=0.462 Sum_probs=66.1
Q ss_pred CCEEEEEecChhHHHHHHHHHhCC----CEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS 244 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g----~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~ 244 (300)
.++|+|||+|+||.++++.|...| .++++++++.... +.....+..+++.+||+|++++| ...++.++. ++..
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~-~i~~ 79 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL-EIKP 79 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-HHHh
Confidence 469999999999999999999766 2488888865432 22334577788899999999988 344555553 4444
Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233 245 ALGKEGVVINIGRGPIIDEQELVRCLV 271 (300)
Q Consensus 245 ~mk~ga~lIn~srg~~vd~~aL~~aL~ 271 (300)
.++++. +|.+.-| +..+.+.+.+.
T Consensus 80 ~l~~~~-iIS~~aG--i~~~~l~~~~~ 103 (260)
T PTZ00431 80 YLGSKL-LISICGG--LNLKTLEEMVG 103 (260)
T ss_pred hccCCE-EEEEeCC--ccHHHHHHHcC
Confidence 555554 4555444 33555555553
No 119
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.29 E-value=5.4e-06 Score=62.38 Aligned_cols=66 Identities=27% Similarity=0.407 Sum_probs=55.2
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhC-CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAF-GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS 244 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~-g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~ 244 (300)
.+.+++++|+|.|.+|+.++..+... +.+|.+++| |+++.+.+.. +.+.++..+
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~~----~~~~~~~~~ 74 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPAG----VPVLEEATA 74 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCCC----CCchHHHHH
Confidence 47789999999999999999999998 568888887 9999998753 334455678
Q ss_pred cCCCCcEEEEcC
Q 022233 245 ALGKEGVVINIG 256 (300)
Q Consensus 245 ~mk~ga~lIn~s 256 (300)
.++++++++|++
T Consensus 75 ~~~~~~~v~~~a 86 (86)
T cd05191 75 KINEGAVVIDLA 86 (86)
T ss_pred hcCCCCEEEecC
Confidence 889999999975
No 120
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.28 E-value=9.2e-06 Score=80.11 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=106.0
Q ss_pred CcEEEEEeCCCCCCHHHHccC-CCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCC--c--------hhHHHHHHHHHH
Q 022233 63 SVEAILSSGGAPVTAETLRLM-PAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVF--S--------EDVADLAVGLLI 131 (300)
Q Consensus 63 ~~d~ii~~~~~~~~~e~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~--~--------~~vAE~~l~l~L 131 (300)
++|+|+.- . +.+.+-++.+ ++--+|+...-..|.=-++.+.+++|.+..-..+- + .++|+.
T Consensus 64 ~adiIlkV-~-~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~i------ 135 (511)
T TIGR00561 64 QSDIILKV-N-APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANI------ 135 (511)
T ss_pred cCCEEEEe-C-CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHH------
Confidence 46766632 2 2344446665 45556666665555545778889999988632111 1 122222
Q ss_pred HHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----C
Q 022233 132 DLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----V 206 (300)
Q Consensus 132 ~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~ 206 (300)
+-+|-.....+.. |++. .+..... | .+.+.++.|+|+|.+|...++.++.+|.+|.+++++.... .
T Consensus 136 AGy~Avi~Aa~~l--gr~~----~g~~taa--g-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l 206 (511)
T TIGR00561 136 AGYRAIIEAAHEF--GRFF----TGQITAA--G-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM 206 (511)
T ss_pred HHHHHHHHHHHHh--hhhc----CCceecC--C-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 2222222221111 1111 0000011 2 4568899999999999999999999999999988765321 1
Q ss_pred CCcc-----------------cCC----------HHHHhhcCCEEEEec--CCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233 207 SYPF-----------------YSN----------VCELAANCDILIICC--GLTAETHHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 207 ~~~~-----------------~~~----------l~e~l~~aDvV~l~~--p~~~~t~~li~~~~l~~mk~ga~lIn~s 256 (300)
+... ..+ +.+.++++|+|+.++ |..+ ...++.++.++.||+|+++||+|
T Consensus 207 Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 207 GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred CCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence 1110 001 445678899998877 3222 23578999999999999999997
No 121
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.27 E-value=2.3e-06 Score=78.02 Aligned_cols=102 Identities=23% Similarity=0.362 Sum_probs=70.8
Q ss_pred CEEEEEecChhHHHHHHHHHhC--CCEE-EEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAF--GCSI-SYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~--g~~V-~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
++|||||+|.||+.+++.+... ++++ .++|++.+.. .+...+.++++++.++|+|+++.|...... +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~--~-- 77 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEE--V-- 77 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHH--H--
Confidence 4899999999999999998865 4665 4688875421 123446789999899999999987433222 1
Q ss_pred HHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHhCCce
Q 022233 241 QVLSALGKEGVVINIGRGPIID---EQELVRCLVQGEIK 276 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~vd---~~aL~~aL~~~~i~ 276 (300)
....++.|.-++..+.|.+.| .+.|.++.++++..
T Consensus 78 -~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 78 -VPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred -HHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 223345566667778888776 34677777776643
No 122
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.27 E-value=4e-06 Score=76.14 Aligned_cols=98 Identities=22% Similarity=0.340 Sum_probs=74.8
Q ss_pred CEEEEEecChhHHHHHHHHHhCC----CEEEEECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTKKPSV------SYPFYSNVCELAANCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g----~~V~~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~ 239 (300)
++|||||+|+||++++..|...| .+|++.+|+.+... +.....+.+++..++|+|++++. |+ .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 58999999999999999999888 58899998865431 33335677899999999999995 32 22
Q ss_pred HHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233 240 KQVLSALG---KEGVVINIGRGPIIDEQELVRCLVQGEI 275 (300)
Q Consensus 240 ~~~l~~mk---~ga~lIn~srg~~vd~~aL~~aL~~~~i 275 (300)
.+.++.++ ++.++|.++-| +..+.|.+++.+.++
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~v 112 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRV 112 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCce
Confidence 44555555 78999999888 567778888764444
No 123
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.27 E-value=2.6e-06 Score=77.65 Aligned_cols=90 Identities=23% Similarity=0.335 Sum_probs=69.5
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPFYSNVCELAANCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~ 239 (300)
-|.||+|+|||||+-|++=|.+|+..|.+|++--|.... ..+.. ..+.+|++++||+|.+.+|...+. .++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q~-~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQK-EVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhHH-HHHH
Confidence 389999999999999999999999999998765443332 12333 468999999999999999976553 3556
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 022233 240 KQVLSALGKEGVVINIGRG 258 (300)
Q Consensus 240 ~~~l~~mk~ga~lIn~srg 258 (300)
+++-..|++|..+ ..|.|
T Consensus 93 ~~I~p~Lk~G~aL-~FaHG 110 (338)
T COG0059 93 KEIAPNLKEGAAL-GFAHG 110 (338)
T ss_pred HHhhhhhcCCceE-Eeccc
Confidence 6788889999854 34444
No 124
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.26 E-value=4e-06 Score=75.01 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=69.0
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCC---CE-EEEECCC-CCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFG---CS-ISYNSRT-KKPS------VSYPFYSNVCELAANCDILIICCGLTAETHH 236 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g---~~-V~~~~~~-~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~ 236 (300)
.+++|+|||.|+||+++++.+...| .+ ++.++++ .+.. .+.....+++++++++|+|++++|... .+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~-~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA-HEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH-HHH
Confidence 3579999999999999999998765 23 6677764 2211 133345678899999999999999543 333
Q ss_pred cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
++ +++...++ +.++|.++-| ++.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 33 33333344 5689999766 4555677766543
No 125
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=7.1e-06 Score=77.26 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=96.7
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CCcccCCHHHH---hhcCCEEEEecCCChhhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SYPFYSNVCEL---AANCDILIICCGLTAETH 235 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~e~---l~~aDvV~l~~p~~~~t~ 235 (300)
...||+||+|.||+.+|.+....|++|.+|+|+..... ....+.+++|+ ++.---|++++-....+.
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 35799999999999999999999999999999875421 22334577775 566778888886543334
Q ss_pred hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP 287 (300)
.+| ++++..|.+|-++||-+-..--|+....++|.+..|...|.-|-..|-
T Consensus 83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEe 133 (473)
T COG0362 83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEE 133 (473)
T ss_pred HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccc
Confidence 444 578899999999999999999999999999999999999999987764
No 126
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.24 E-value=7.2e-06 Score=75.11 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=64.6
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||.|. +|+++|..|...|+.|+++.+. ..++.+.+++||+|+.+++.. +++..
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvi~avG~p----~~v~~-- 218 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------TKNLRHHVRNADLLVVAVGKP----GFIPG-- 218 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC---------CCCHHHHHhhCCEEEEcCCCc----ccccH--
Confidence 4568999999999999 9999999999999999887543 236899999999999999532 24554
Q ss_pred HhcCCCCcEEEEcC
Q 022233 243 LSALGKEGVVINIG 256 (300)
Q Consensus 243 l~~mk~ga~lIn~s 256 (300)
+.+|+|+++||++
T Consensus 219 -~~vk~gavVIDvG 231 (285)
T PRK10792 219 -EWIKPGAIVIDVG 231 (285)
T ss_pred -HHcCCCcEEEEcc
Confidence 4578999999999
No 127
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.23 E-value=3.8e-06 Score=78.87 Aligned_cols=104 Identities=20% Similarity=0.329 Sum_probs=74.5
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCc-----------------ccCCHHHHhhcCCEEEEec
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYP-----------------FYSNVCELAANCDILIICC 228 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~-----------------~~~~l~e~l~~aDvV~l~~ 228 (300)
++|+|||.|.||..+|..|...|++|.+++|+.... .+.. ...+. +.+..+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 589999999999999999999999999999864210 0110 12233 5678999999999
Q ss_pred CCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 022233 229 GLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKG 277 (300)
Q Consensus 229 p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~ 277 (300)
|... ...++ +.+.+.++++.++|++.-| +...+.+.+.+.+.++..
T Consensus 82 k~~~-~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 82 KSAA-TADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA 127 (341)
T ss_pred cCcc-hHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence 8643 44444 4566778899999988654 455667777776655543
No 128
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.23 E-value=1.6e-05 Score=65.52 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=67.0
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.|++|.|+|-+. .|+.+|..|...|++|...+++. .++++.+++||+|+.+++.. ++|+.+.
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~ 89 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW 89 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence 5578999999999874 79999999999999998877532 37889999999999998754 4576554
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
+|+|+++||++...
T Consensus 90 ---ikpGa~Vidvg~~~ 103 (140)
T cd05212 90 ---IKPGATVINCSPTK 103 (140)
T ss_pred ---cCCCCEEEEcCCCc
Confidence 78999999999776
No 129
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=4e-06 Score=76.53 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=66.8
Q ss_pred ccccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.|+++.|+|.+ ..|+++|..|...|++|+...+.. .++.+.+++||+|+.+++.. +++.++.
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk~----~lv~~~~ 213 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGKA----GFITPDM 213 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCcc----cccCHHH
Confidence 456899999999999 999999999999999998765432 46999999999999999633 5677777
Q ss_pred HhcCCCCcEEEEcCCC
Q 022233 243 LSALGKEGVVINIGRG 258 (300)
Q Consensus 243 l~~mk~ga~lIn~srg 258 (300)
+|+|+++||+|-.
T Consensus 214 ---vk~GavVIDVgi~ 226 (279)
T PRK14178 214 ---VKPGATVIDVGIN 226 (279)
T ss_pred ---cCCCcEEEEeecc
Confidence 4999999999944
No 130
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.23 E-value=8.6e-06 Score=68.59 Aligned_cols=81 Identities=26% Similarity=0.418 Sum_probs=58.5
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|++++..|...|+.|+...... .++++.+++||+|+.++.- .++|..
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G~----~~~i~~-- 95 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVGK----PNLIKA-- 95 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SSS----TT-B-G--
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeecc----cccccc--
Confidence 5579999999999995 99999999999999998766542 4789999999999999864 344543
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 022233 243 LSALGKEGVVINIGRGPI 260 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~ 260 (300)
+.+|+|+++||++.-..
T Consensus 96 -~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 96 -DWIKPGAVVIDVGINYV 112 (160)
T ss_dssp -GGS-TTEEEEE--CEEE
T ss_pred -ccccCCcEEEecCCccc
Confidence 35799999999987665
No 131
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.20 E-value=6.7e-06 Score=75.56 Aligned_cols=80 Identities=25% Similarity=0.391 Sum_probs=65.8
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.|+++.|||.|. .|+++|..|...|++|+++++. ..++.+.+++||+|+.+++ .+ +++..+.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG-~~---~~v~~~~ 220 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVG-KP---ELIKKDW 220 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccC-CC---CcCCHHH
Confidence 4468899999999998 9999999999999999888762 2468888999999999996 22 2566544
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
+++|++++|++-..
T Consensus 221 ---lk~gavViDvg~n~ 234 (283)
T PRK14192 221 ---IKQGAVVVDAGFHP 234 (283)
T ss_pred ---cCCCCEEEEEEEee
Confidence 78999999998443
No 132
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.20 E-value=6e-06 Score=75.63 Aligned_cols=78 Identities=23% Similarity=0.419 Sum_probs=65.3
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.|+++.|||.|. +|+++|..|...|+.|+++... ..++.+..++||+|+.++.- .+++..+
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvv~AvG~----p~~i~~~- 224 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------TDDLKKYTLDADILVVATGV----KHLIKAD- 224 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------CCCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence 5568999999999999 9999999999999999887642 23689999999999998753 2456655
Q ss_pred HhcCCCCcEEEEcCC
Q 022233 243 LSALGKEGVVINIGR 257 (300)
Q Consensus 243 l~~mk~ga~lIn~sr 257 (300)
.+|+|+++||+|-
T Consensus 225 --~vk~gavVIDvGi 237 (287)
T PRK14176 225 --MVKEGAVIFDVGI 237 (287)
T ss_pred --HcCCCcEEEEecc
Confidence 5789999999985
No 133
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.19 E-value=3.2e-06 Score=78.79 Aligned_cols=94 Identities=26% Similarity=0.425 Sum_probs=66.7
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCC------CCCc--ccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPS------VSYP--FYSNVCELAANCDILIICCGLTAETHHM 237 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~------~~~~--~~~~l~e~l~~aDvV~l~~p~~~~t~~l 237 (300)
+.|++|+|||.|.||+.+++.|+..| .+|++++|+.... .+.. ...++.+.+.++|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999876 4788999986432 1221 123567788999999999985543 222
Q ss_pred chHHHHhcC-CCCcEEEEcCCCcccC
Q 022233 238 INKQVLSAL-GKEGVVINIGRGPIID 262 (300)
Q Consensus 238 i~~~~l~~m-k~ga~lIn~srg~~vd 262 (300)
+ +..++.. +++.++||++...-+|
T Consensus 255 ~-~~~~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCCCCCc
Confidence 2 3333333 3678999999644343
No 134
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.18 E-value=2.3e-06 Score=73.58 Aligned_cols=110 Identities=15% Similarity=0.261 Sum_probs=74.9
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhcC
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAANC 221 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~a 221 (300)
+|+|||.|.||+.+|..+...|++|..||+++.... + .....+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999998765310 0 12346788888 99
Q ss_pred CEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233 222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE 284 (300)
Q Consensus 222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~ 284 (300)
|+|+=++|-.-+.+.-+-+++-+.++++++|...+.+ ..-..|...+... =+..++=.|.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~p-~R~ig~Hf~~ 139 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSRP-ERFIGMHFFN 139 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSSTG-GGEEEEEE-S
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCcC-ceEEEEeccc
Confidence 9999999988887776777777888899887655443 4555666666432 2235555554
No 135
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.16 E-value=2.2e-06 Score=83.06 Aligned_cols=95 Identities=27% Similarity=0.360 Sum_probs=70.9
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCCC------CC--cccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPSV------SY--PFYSNVCELAANCDILIICCGLTAETHH 236 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~~ 236 (300)
.+.|++|+|+|.|.||+.+++.|+..| .+|++++|+..... +. ....++.+++.++|+|+.+++ .+..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence 478999999999999999999999999 68999999865321 21 112467788899999999965 3445
Q ss_pred cchHHHHhcCC----CCcEEEEcCCCcccCH
Q 022233 237 MINKQVLSALG----KEGVVINIGRGPIIDE 263 (300)
Q Consensus 237 li~~~~l~~mk----~ga~lIn~srg~~vd~ 263 (300)
+++.+.++.+. .+.++||.+...=+|.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 67877776542 3469999986544443
No 136
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.16 E-value=1.9e-06 Score=73.06 Aligned_cols=92 Identities=16% Similarity=0.277 Sum_probs=66.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CC--------------------------CcccCC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VS--------------------------YPFYSN 213 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~--------------------------~~~~~~ 213 (300)
..+...+|.|+|.|+.|+..++.+.++|++|..++...... .. ..+...
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 45778899999999999999999999999999888754310 00 001124
Q ss_pred HHHHhhcCCEEEEecC-CChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233 214 VCELAANCDILIICCG-LTAETHHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 214 l~e~l~~aDvV~l~~p-~~~~t~~li~~~~l~~mk~ga~lIn~s 256 (300)
+.+.++.+|+|++++- -.+....++.++.++.||+|.+++|+|
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 6788999999997543 355667789999999999999999996
No 137
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.15 E-value=3.9e-06 Score=77.57 Aligned_cols=104 Identities=14% Similarity=0.324 Sum_probs=79.6
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHh-hcCCEEEEecCCChhhhhcchHHHH
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELA-ANCDILIICCGLTAETHHMINKQVL 243 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l 243 (300)
-.+|||||+|+||+-.|+.+...|+.|..++|..-.. .+...+..+.+++ +++|+|++|+.. ..++.++-.-=+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence 3489999999999999999999999999999976322 2445667788876 558999999753 233444432235
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 244 SALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
+.+|.|++++++-.-....-+++.+-|-+.
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkd 160 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKD 160 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccc
Confidence 668999999999988888888888877543
No 138
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.15 E-value=7.6e-06 Score=74.93 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=66.0
Q ss_pred ccccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-| .+|+++|..|...|+.|++.... ..++.+.+++||+|+.+++. .+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~---------t~~l~~~~~~ADIvV~AvG~----p~~i~~~~ 218 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL---------TKDLSFYTQNADIVCVGVGK----PDLIKASM 218 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC---------cHHHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence 556899999999999 99999999999999999876432 13588999999999999863 34676665
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
+|+|+++||++--.
T Consensus 219 ---vk~GavVIDvGi~~ 232 (285)
T PRK14191 219 ---VKKGAVVVDIGINR 232 (285)
T ss_pred ---cCCCcEEEEeeccc
Confidence 48999999999643
No 139
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.14 E-value=9.2e-06 Score=72.33 Aligned_cols=110 Identities=19% Similarity=0.223 Sum_probs=80.1
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCE---EEEECCCC----CCCC-----------CC--ccc-CCHHHHhhcCC
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS---ISYNSRTK----KPSV-----------SY--PFY-SNVCELAANCD 222 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~---V~~~~~~~----~~~~-----------~~--~~~-~~l~e~l~~aD 222 (300)
+.++.++++.|+|.|.+|+.+|..|...|++ |+.+||+. .... .. ... .++.+.++++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 3457889999999999999999999999984 88999972 2210 00 111 36778889999
Q ss_pred EEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC-ceEEEe
Q 022233 223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE-IKGAGL 280 (300)
Q Consensus 223 vV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~-i~~a~L 280 (300)
+|+.+.| .++++.+.++.|.++.++++.+ .+..|.-+.++.+.|- |..-|.
T Consensus 100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~ls--nP~~e~~~~~A~~~ga~i~a~G~ 151 (226)
T cd05311 100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALA--NPVPEIWPEEAKEAGADIVATGR 151 (226)
T ss_pred EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeC--CCCCcCCHHHHHHcCCcEEEeCC
Confidence 9999976 4668888999999999999998 3344555555555444 444443
No 140
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.14 E-value=2.1e-05 Score=68.03 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=67.6
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCC------CCCcc------cCCHHHHhhcCCEEEEecCC
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPS------VSYPF------YSNVCELAANCDILIICCGL 230 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~------~~~l~e~l~~aDvV~l~~p~ 230 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+.++.+.-.. ..... ..++.+.+++||+|+.+++.
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence 7789999999999986 69999999999999999885322110 00001 11278999999999999984
Q ss_pred Chhhhhc-chHHHHhcCCCCcEEEEcCCCcccC
Q 022233 231 TAETHHM-INKQVLSALGKEGVVINIGRGPIID 262 (300)
Q Consensus 231 ~~~t~~l-i~~~~l~~mk~ga~lIn~srg~~vd 262 (300)
. ++ +..+. +|+|+++||+|--.-+|
T Consensus 137 ~----~~~i~~d~---ik~GavVIDVGi~~dvd 162 (197)
T cd01079 137 P----NYKVPTEL---LKDGAICINFASIKNFE 162 (197)
T ss_pred C----CCccCHHH---cCCCcEEEEcCCCcCcc
Confidence 3 33 55554 67999999999654333
No 141
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.13 E-value=1.7e-05 Score=73.05 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=72.2
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-----------cccCCHHHHhhcCCEEEEecCCChh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY-----------PFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~-----------~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
++|+|||.|.||..+|..|...|.+|.+++|+.+.. .+. ....+.+++ +.+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 479999999999999999999999999998854321 111 112345555 8999999999954 3
Q ss_pred hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
+..++ +.+.+.+.+++.+|...-| +-.++.+.+.+...++.
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 44433 4555667778888888776 33456666666555554
No 142
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.13 E-value=2.7e-06 Score=77.82 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=76.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CC------cccCCHHHHhhcCCEEEEecCC-Ch
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SY------PFYSNVCELAANCDILIICCGL-TA 232 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~------~~~~~l~e~l~~aDvV~l~~p~-~~ 232 (300)
.+...+|.|||.|.+|..-|+.+..+|.+|+..|++.+... +. .....+++.+.++|+||-++-. .+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 46778999999999999999999999999999988754321 11 1234688999999999987643 23
Q ss_pred hhhhcchHHHHhcCCCCcEEEEcC--CCcccC
Q 022233 233 ETHHMINKQVLSALGKEGVVINIG--RGPIID 262 (300)
Q Consensus 233 ~t~~li~~~~l~~mk~ga~lIn~s--rg~~vd 262 (300)
....++.++.++.||||+++||++ -|+++.
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVAiDqGGc~E 276 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVAIDQGGCFE 276 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEEEcCCCcee
Confidence 456678899999999999999996 444443
No 143
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.08 E-value=1e-05 Score=74.63 Aligned_cols=103 Identities=21% Similarity=0.366 Sum_probs=72.6
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC-----CCCC-------------cccCCHHHHhhcCCEEEEecCCC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP-----SVSY-------------PFYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~-----~~~~-------------~~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
++|+|||.|.||..+|..|...|.+|.+++| .+. ..+. ....+.+++...+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 4799999999999999999999999999988 321 0010 11235566678999999999954
Q ss_pred hhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 232 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
+++.++ +.+.+.++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 334333 4555556778888877665 44567777777655544
No 144
>PLN00203 glutamyl-tRNA reductase
Probab=98.07 E-value=5e-06 Score=82.42 Aligned_cols=94 Identities=19% Similarity=0.321 Sum_probs=70.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------CC----cccCCHHHHhhcCCEEEEecCCChh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------SY----PFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------~~----~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
++.+++|+|||.|.||+.+++.|...|. +|++++|+.+... +. ....++.+++.++|+|+.++| .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 3779999999999999999999999997 7999999865421 11 122466788999999999865 4
Q ss_pred hhhcchHHHHhcCCC-------CcEEEEcCCCcccC
Q 022233 234 THHMINKQVLSALGK-------EGVVINIGRGPIID 262 (300)
Q Consensus 234 t~~li~~~~l~~mk~-------ga~lIn~srg~~vd 262 (300)
...+|.++.++.+.+ ..+|||.+=..=||
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId 375 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVG 375 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence 456788888877642 25899998654333
No 145
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.07 E-value=1.4e-05 Score=74.28 Aligned_cols=96 Identities=19% Similarity=0.333 Sum_probs=72.9
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC----------C---C------CCcccCCHHHHhhcCCEEEEecCC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP----------S---V------SYPFYSNVCELAANCDILIICCGL 230 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~----------~---~------~~~~~~~l~e~l~~aDvV~l~~p~ 230 (300)
++|+|||.|..|.++|..|...|.+|..|.|+++. . . ......++.+++++||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 58999999999999999999999999999875321 0 0 123456899999999999999994
Q ss_pred ChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233 231 TAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELV 267 (300)
Q Consensus 231 ~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~ 267 (300)
...+.++ +.+-..++++..+|+++-|=-.+...+.
T Consensus 82 -~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~~l~ 116 (329)
T COG0240 82 -QALREVL-RQLKPLLLKDAIIVSATKGLEPETGRLL 116 (329)
T ss_pred -HHHHHHH-HHHhhhccCCCeEEEEeccccCCCcchH
Confidence 4444444 3334567899999999988666554444
No 146
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.04 E-value=2e-05 Score=74.43 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=66.7
Q ss_pred EEEEEecChhHHHHHHHHHhCC--------CEEEEECCCC-----C----------CC---CC------CcccCCHHHHh
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFG--------CSISYNSRTK-----K----------PS---VS------YPFYSNVCELA 218 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g--------~~V~~~~~~~-----~----------~~---~~------~~~~~~l~e~l 218 (300)
+|+|||.|+.|.++|..|...| .+|..|.|.. . .. .+ .....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999999877 8999887622 0 00 01 12336889999
Q ss_pred hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccC
Q 022233 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIID 262 (300)
Q Consensus 219 ~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd 262 (300)
++||+|++++|. ...+.++ .++-..++++..+|+++-|=-.+
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence 999999999994 3444433 45556778899999998885443
No 147
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.00 E-value=7.3e-06 Score=79.57 Aligned_cols=94 Identities=28% Similarity=0.399 Sum_probs=68.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------CCc--ccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------SYP--FYSNVCELAANCDILIICCGLTAETHH 236 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~~~--~~~~l~e~l~~aDvV~l~~p~~~~t~~ 236 (300)
.+.|++|+|+|.|.||+.+++.|+..|. +|++++|+..... +.. ...++.+.+.++|+|+.++|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3789999999999999999999999998 7999999764321 211 1245667789999999997643 34
Q ss_pred cchHHHHhcC-----CCCcEEEEcCCCcccC
Q 022233 237 MINKQVLSAL-----GKEGVVINIGRGPIID 262 (300)
Q Consensus 237 li~~~~l~~m-----k~ga~lIn~srg~~vd 262 (300)
++..+.++.+ .++.++||++-..=+|
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCCCCCc
Confidence 5666666543 3568999998544333
No 148
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.00 E-value=2e-05 Score=73.59 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=64.8
Q ss_pred CCCEEEEEecChhHHHHHHHHHh-CC-CEEEEECCCCCCCC---------C--CcccCCHHHHhhcCCEEEEecCCChhh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDA-FG-CSISYNSRTKKPSV---------S--YPFYSNVCELAANCDILIICCGLTAET 234 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~-~g-~~V~~~~~~~~~~~---------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t 234 (300)
..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|+++... + .....++++++++||+|+++.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46799999999999999986653 55 58999999865421 1 223468889999999998887744
Q ss_pred hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233 235 HHMINKQVLSALGKEGVVINIGRGPIIDEQELVR 268 (300)
Q Consensus 235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~ 268 (300)
+.++.. +.+++|+ +||+.-........+-.
T Consensus 201 ~pvl~~---~~l~~g~-~i~~ig~~~~~~~El~~ 230 (314)
T PRK06141 201 EPLVRG---EWLKPGT-HLDLVGNFTPDMRECDD 230 (314)
T ss_pred CCEecH---HHcCCCC-EEEeeCCCCcccccCCH
Confidence 456654 3478998 45554333333334433
No 149
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=5.5e-05 Score=69.28 Aligned_cols=81 Identities=23% Similarity=0.457 Sum_probs=65.8
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+.+... ..++.+..++||+|+.++.-. +++..+.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------T~~l~~~~~~ADIvI~AvG~~----~~i~~~~ 218 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------TKDLPQVAKEADILVVATGLA----KFVKKDY 218 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecCCc----CccCHHH
Confidence 5679999999999986 6999999999999999876432 136899999999999998743 4566554
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 022233 243 LSALGKEGVVINIGRGPI 260 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~ 260 (300)
+|+|+++||+|--.+
T Consensus 219 ---vk~GavVIDvGin~~ 233 (284)
T PRK14170 219 ---IKPGAIVIDVGMDRD 233 (284)
T ss_pred ---cCCCCEEEEccCccc
Confidence 679999999986553
No 150
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=3.4e-05 Score=70.55 Aligned_cols=78 Identities=22% Similarity=0.334 Sum_probs=64.4
Q ss_pred ccccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-| .+|+++|..|...|+.|+..... ..++.+..++||+|+.++.. .+++..+.
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~---------T~~l~~~~~~ADIvV~AvGk----p~~i~~~~ 218 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF---------TKDLKAHTKKADIVIVGVGK----PNLITEDM 218 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CcCHHHHHhhCCEEEEecCc----ccccCHHH
Confidence 557899999999999 89999999999999999876432 13688999999999999863 34566554
Q ss_pred HhcCCCCcEEEEcCC
Q 022233 243 LSALGKEGVVINIGR 257 (300)
Q Consensus 243 l~~mk~ga~lIn~sr 257 (300)
.|+|+++||++-
T Consensus 219 ---vk~gavvIDvGi 230 (281)
T PRK14183 219 ---VKEGAIVIDIGI 230 (281)
T ss_pred ---cCCCcEEEEeec
Confidence 679999999993
No 151
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.99 E-value=5.5e-05 Score=74.81 Aligned_cols=178 Identities=16% Similarity=0.225 Sum_probs=104.6
Q ss_pred CcEEEEEeCCCCCCHHHHccCC-CcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCC--c--------hhHHHHHHHHHH
Q 022233 63 SVEAILSSGGAPVTAETLRLMP-AVRLVMTTSAGLNHVDIAECRRRGITVANAGNVF--S--------EDVADLAVGLLI 131 (300)
Q Consensus 63 ~~d~ii~~~~~~~~~e~l~~~p-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~--~--------~~vAE~~l~l~L 131 (300)
++|+|+.- . +.+.+-++.+. +--+|+......|.=-++.+.++||.+..-...- + .+.|+.
T Consensus 65 ~~diilkV-~-~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~I------ 136 (509)
T PRK09424 65 QSDIILKV-N-APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANI------ 136 (509)
T ss_pred cCCEEEEe-C-CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhh------
Confidence 46777742 2 23444456654 5556666666566556778889999987632211 0 122221
Q ss_pred HHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----C
Q 022233 132 DLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----V 206 (300)
Q Consensus 132 ~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~ 206 (300)
+-+|-+..+.+. -+... .+.. .. .....+.+|.|+|.|.+|...+..++.+|.+|.++|+++... .
T Consensus 137 AGy~Av~~aa~~--~~~~~----~g~~-ta--aG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 137 AGYRAVIEAAHE--FGRFF----TGQI-TA--AGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred hHHHHHHHHHHH--hcccC----CCce-ec--cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 112222222111 11111 0000 00 113569999999999999999999999999999999876431 1
Q ss_pred CCccc-------------------CCH--------HHHhhcCCEEEEecCCChh-hhhcchHHHHhcCCCCcEEEEcCC
Q 022233 207 SYPFY-------------------SNV--------CELAANCDILIICCGLTAE-THHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 207 ~~~~~-------------------~~l--------~e~l~~aDvV~l~~p~~~~-t~~li~~~~l~~mk~ga~lIn~sr 257 (300)
++... .+. .+.++++|+|+.+...... ...++.++.++.||+|+++|+++-
T Consensus 208 GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 208 GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 22210 010 1123579999998754221 234557899999999999999984
No 152
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.98 E-value=2.9e-05 Score=73.90 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=67.0
Q ss_pred CCEEEEEecChhHHHHHHHHHhCC-------CEEEEECCCCCC---------------C---CC------CcccCCHHHH
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFG-------CSISYNSRTKKP---------------S---VS------YPFYSNVCEL 217 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g-------~~V~~~~~~~~~---------------~---~~------~~~~~~l~e~ 217 (300)
.++|+|||.|..|.++|..|...| .+|..|.|++.- . .+ .....+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 469999999999999999999776 789888776531 0 01 1224578899
Q ss_pred hhcCCEEEEecCCChhhhhcchHHHHh--cCCCCcEEEEcCCCcccCH
Q 022233 218 AANCDILIICCGLTAETHHMINKQVLS--ALGKEGVVINIGRGPIIDE 263 (300)
Q Consensus 218 l~~aDvV~l~~p~~~~t~~li~~~~l~--~mk~ga~lIn~srg~~vd~ 263 (300)
+++||+|++++|.. ..+.++ +++-. .+++++++|+++-|=-.++
T Consensus 91 v~~aDiIvlAVPsq-~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 91 VEDADLLIFVIPHQ-FLESVL-SQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HhcCCEEEEEcChH-HHHHHH-HHhccccccCCCCEEEEEeCCcccCC
Confidence 99999999999943 344443 33334 5677889999987754443
No 153
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.97 E-value=1.5e-05 Score=68.94 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=68.2
Q ss_pred ccccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CC-------cccCCHHHHhhcCCEEE
Q 022233 164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SY-------PFYSNVCELAANCDILI 225 (300)
Q Consensus 164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~-------~~~~~l~e~l~~aDvV~ 225 (300)
|..++++++.|+|. |.+|+.+++.|...|.+|..++|+.+... +. ....++.++++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 44578999999995 99999999999999999999988754210 00 11123457889999999
Q ss_pred EecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCH
Q 022233 226 ICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDE 263 (300)
Q Consensus 226 l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~ 263 (300)
.+.|....+. + ..-...+++.+++|+.+...++.
T Consensus 103 ~at~~g~~~~--~--~~~~~~~~~~vv~D~~~~~~~~~ 136 (194)
T cd01078 103 AAGAAGVELL--E--KLAWAPKPLAVAADVNAVPPVGI 136 (194)
T ss_pred ECCCCCceec--h--hhhcccCceeEEEEccCCCCCCc
Confidence 9988665311 1 12223456889999988887654
No 154
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.96 E-value=5e-05 Score=70.03 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=65.8
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+.+... ..++++.+++||+|+.++.- .+++..+.
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~ 228 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------TPDPESIVREADIVIAAAGQ----AMMIKGDW 228 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence 5568999999999986 6999999999999999877543 23689999999999999864 25676655
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
+|+|+++||+|--.
T Consensus 229 ---vk~gavVIDvGin~ 242 (299)
T PLN02516 229 ---IKPGAAVIDVGTNA 242 (299)
T ss_pred ---cCCCCEEEEeeccc
Confidence 67999999998544
No 155
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.94 E-value=6.8e-05 Score=68.80 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=63.8
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+..... ..++.+..++||+|+.++.- .++|..+.
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~ 220 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------THNLSSITSKADIVVAAIGS----PLKLTAEY 220 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCC----CCccCHHH
Confidence 4568999999999985 6999999999999999876532 13689999999999999873 24676665
Q ss_pred HhcCCCCcEEEEcC
Q 022233 243 LSALGKEGVVINIG 256 (300)
Q Consensus 243 l~~mk~ga~lIn~s 256 (300)
.|+|+++||+|
T Consensus 221 ---vk~GavVIDvG 231 (288)
T PRK14171 221 ---FNPESIVIDVG 231 (288)
T ss_pred ---cCCCCEEEEee
Confidence 67999999998
No 156
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=7e-05 Score=68.66 Aligned_cols=81 Identities=27% Similarity=0.477 Sum_probs=66.7
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|..|+.+... ..++.+.+++||+|+.++.. .++|..+.
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG~----p~~i~~~~ 219 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVGK----PKLITADM 219 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence 5578999999999875 7999999999999999876432 24789999999999999853 34677776
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 022233 243 LSALGKEGVVINIGRGPI 260 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~ 260 (300)
+ |+|+++||++.-.+
T Consensus 220 i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 220 V---KEGAVVIDVGVNRL 234 (284)
T ss_pred c---CCCCEEEEeecccc
Confidence 4 89999999987654
No 157
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=5.5e-05 Score=69.25 Aligned_cols=80 Identities=26% Similarity=0.462 Sum_probs=65.4
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+...... .++.+..++||+|+++++- .+++..+.
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~----p~~i~~~~ 217 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVGV----PHFIGADA 217 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 5568999999999985 69999999999999998764321 3689999999999999874 34576664
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
+|+|+++||++--.
T Consensus 218 ---vk~GavVIDvGin~ 231 (282)
T PRK14169 218 ---VKPGAVVIDVGISR 231 (282)
T ss_pred ---cCCCcEEEEeeccc
Confidence 67999999998544
No 158
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=6e-05 Score=69.47 Aligned_cols=81 Identities=20% Similarity=0.379 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+.+... ..++.+..++||+|+.+++-. +++..+.
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvIsAvGkp----~~i~~~~ 219 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------TQDLASITREADILVAAAGRP----NLIGAEM 219 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence 5578999999999985 6999999999999999876432 137899999999999999732 4576555
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 022233 243 LSALGKEGVVINIGRGPI 260 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~ 260 (300)
+|+|+++||+|--.+
T Consensus 220 ---ik~gavVIDvGin~~ 234 (297)
T PRK14186 220 ---VKPGAVVVDVGIHRL 234 (297)
T ss_pred ---cCCCCEEEEeccccc
Confidence 679999999986553
No 159
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.91 E-value=7.8e-06 Score=74.97 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=72.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCCC------CC----cccCCHHHHhhcCCEEEEecCCChhh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPSV------SY----PFYSNVCELAANCDILIICCGLTAET 234 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~------~~----~~~~~l~e~l~~aDvV~l~~p~~~~t 234 (300)
.+.++++.|+|.|.+|++++..|...| .+|++++|+.+... .. ....++.+.+.++|+|+.++|..-..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 467899999999999999999999999 68999999865321 10 11013456778999999999975432
Q ss_pred hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233 235 HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE 274 (300)
Q Consensus 235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~ 274 (300)
..-...-....++++.+++|+.-.+ ..+ .|.++.++.+
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G 237 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQG 237 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCc
Confidence 1001111234567899999998755 344 4444444443
No 160
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=6.3e-05 Score=68.87 Aligned_cols=78 Identities=19% Similarity=0.375 Sum_probs=64.5
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+.+.... .++.+..++||+|+.++.- .+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvGk----p~~i~~~~ 218 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSDM 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence 5568999999999985 69999999999999998765432 3699999999999999864 34576664
Q ss_pred HhcCCCCcEEEEcCC
Q 022233 243 LSALGKEGVVINIGR 257 (300)
Q Consensus 243 l~~mk~ga~lIn~sr 257 (300)
.|+|+++||+|-
T Consensus 219 ---vk~GavVIDvGi 230 (282)
T PRK14166 219 ---VKEGVIVVDVGI 230 (282)
T ss_pred ---cCCCCEEEEecc
Confidence 679999999984
No 161
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.88 E-value=4.4e-05 Score=69.41 Aligned_cols=81 Identities=26% Similarity=0.444 Sum_probs=66.3
Q ss_pred ccccCCCEEEEEecChh-HHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGSI-GSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~I-G~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.+|+|+++.|||-++| |++||..|...++.|++..... .++.+..++||+|+.++-. .+++.++
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG~----p~~i~~d- 216 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVGK----PHFIKAD- 216 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecCC----ccccccc-
Confidence 56799999999999975 9999999999999998876532 4788999999999999853 3556543
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 022233 243 LSALGKEGVVINIGRGPI 260 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~ 260 (300)
..|+|+++||++--.+
T Consensus 217 --~vk~gavVIDVGinrv 232 (283)
T COG0190 217 --MVKPGAVVIDVGINRV 232 (283)
T ss_pred --cccCCCEEEecCCccc
Confidence 4789999999986544
No 162
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=6.2e-05 Score=69.41 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=64.7
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHh----CCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDA----FGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~----~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li 238 (300)
+.++.||++.|||-+. +|+++|..|.. .|.+|+...... .++++.+++||+|+.+++.. ++|
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~~----~li 220 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGKA----RFI 220 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCcc----Ccc
Confidence 5568999999999985 69999999986 578887655432 36899999999999999533 568
Q ss_pred hHHHHhcCCCCcEEEEcCCCc
Q 022233 239 NKQVLSALGKEGVVINIGRGP 259 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~ 259 (300)
.++.+ |+|+++||+|-..
T Consensus 221 ~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 221 TADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CHHHc---CCCCEEEEeeccc
Confidence 87776 8999999998544
No 163
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.87 E-value=4.9e-05 Score=71.29 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=65.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCCCCcccCCHH----HHhhcCCEEEEecCCChhhhhcchH
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSVSYPFYSNVC----ELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~~~~~~~~l~----e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
++.|+++.|||.|.||+.+|+.|...|. +|++.+|+.... .+.++. +...++|+|+.+.--|......+..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~----~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL----PYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc----chhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 4889999999999999999999999996 699999987531 122222 5567999999874323333345666
Q ss_pred HHHhcCCCCcEEEEcCCCcccC
Q 022233 241 QVLSALGKEGVVINIGRGPIID 262 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~vd 262 (300)
+.++..++ -++||.+=..=||
T Consensus 247 ~~~~~~~~-r~~iDLAvPRdId 267 (338)
T PRK00676 247 ESLADIPD-RIVFDFNVPRTFP 267 (338)
T ss_pred HHHhhccC-cEEEEecCCCCCc
Confidence 65554332 3899988655555
No 164
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.87 E-value=5.3e-05 Score=69.13 Aligned_cols=104 Identities=18% Similarity=0.122 Sum_probs=73.1
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCcccCCHHHH-hhcCCEEEEecCCC--hhh
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYPFYSNVCEL-AANCDILIICCGLT--AET 234 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~~~~~l~e~-l~~aDvV~l~~p~~--~~t 234 (300)
..+++++|+|.|.+|++++..|...|.+|.+++|+.++.. +.....++++. ..++|+|+.++|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 4578999999999999999999999999999998754321 11112234433 35799999999975 222
Q ss_pred hh-cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233 235 HH-MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI 275 (300)
Q Consensus 235 ~~-li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i 275 (300)
.. .++ .+.++++.+++|+.-.+.. + .|.++.++.++
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~G~ 231 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKSLGT 231 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHHCCC
Confidence 11 222 3457899999999887753 3 57777666654
No 165
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.86 E-value=7e-05 Score=70.10 Aligned_cols=80 Identities=21% Similarity=0.411 Sum_probs=65.1
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+...... .++.+..++||+|+.++.- .+++..+.
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvGk----p~~v~~d~ 275 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAGI----PNLVRGSW 275 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 5578999999999986 69999999999999998764321 3688999999999999864 34576555
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
+|+|+++||+|--.
T Consensus 276 ---vk~GavVIDVGin~ 289 (345)
T PLN02897 276 ---LKPGAVVIDVGTTP 289 (345)
T ss_pred ---cCCCCEEEEccccc
Confidence 67999999998544
No 166
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=8.7e-05 Score=67.95 Aligned_cols=78 Identities=19% Similarity=0.361 Sum_probs=64.5
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+.+... ..++.+..++||+|+.++.- .+++..+.
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------T~~l~~~~~~ADIvIsAvGk----~~~i~~~~ 220 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------TQNLPSIVRQADIIVGAVGK----PEFIKADW 220 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEeCCC----cCccCHHH
Confidence 4568999999999985 6999999999999999887643 23688999999999999864 34566554
Q ss_pred HhcCCCCcEEEEcCC
Q 022233 243 LSALGKEGVVINIGR 257 (300)
Q Consensus 243 l~~mk~ga~lIn~sr 257 (300)
.|+|+++||+|-
T Consensus 221 ---ik~gavVIDvGi 232 (284)
T PRK14177 221 ---ISEGAVLLDAGY 232 (284)
T ss_pred ---cCCCCEEEEecC
Confidence 679999999985
No 167
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.85 E-value=7.7e-05 Score=70.15 Aligned_cols=80 Identities=25% Similarity=0.383 Sum_probs=65.3
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+.+... ..++.+..++||+|+.++.- .++|..+.
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------T~nl~~~~r~ADIVIsAvGk----p~~i~~d~ 292 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------TKNPEEITREADIIISAVGQ----PNMVRGSW 292 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCcCCHHH
Confidence 5568999999999985 6999999999999999876542 14789999999999999863 34576655
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
.|+|+++||++--.
T Consensus 293 ---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 293 ---IKPGAVVIDVGINP 306 (364)
T ss_pred ---cCCCCEEEeccccc
Confidence 67999999998544
No 168
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.84 E-value=0.00011 Score=58.51 Aligned_cols=102 Identities=21% Similarity=0.394 Sum_probs=71.3
Q ss_pred CEEEEEe----cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233 170 KRVGIVG----LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA 245 (300)
Q Consensus 170 ~~vgIiG----~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~ 245 (300)
|+|+||| -+..|..+.+.|+..|++|+..++......+...+.++.|.-...|++++++|.. .+..++. +. ..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v~-~~-~~ 77 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIVD-EA-AA 77 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHHH-HH-HH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHH-HHHHHHH-HH-HH
Confidence 5899999 7899999999999999999999888766667777889999558899999999843 3344442 22 33
Q ss_pred CCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233 246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278 (300)
Q Consensus 246 mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a 278 (300)
+..+.+|+..+ ..++++.+.+++..+.-.
T Consensus 78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 78 LGVKAVWLQPG----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HT-SEEEE-TT----S--HHHHHHHHHTT-EEE
T ss_pred cCCCEEEEEcc----hHHHHHHHHHHHcCCEEE
Confidence 46778999988 777888888888877633
No 169
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.84 E-value=0.00015 Score=66.27 Aligned_cols=80 Identities=23% Similarity=0.423 Sum_probs=65.4
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+.+... ..++.+..++||+|+.++... ++|..+.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------T~~l~~~~~~ADIvIsAvGkp----~~i~~~~ 219 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------TKNLKEVCKKADILVVAIGRP----KFIDEEY 219 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCCc----CccCHHH
Confidence 4568999999999985 6999999999999999877643 136899999999999998743 4576665
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
+|+|+++||++--.
T Consensus 220 ---ik~gavVIDvGin~ 233 (278)
T PRK14172 220 ---VKEGAIVIDVGTSS 233 (278)
T ss_pred ---cCCCcEEEEeeccc
Confidence 68999999997443
No 170
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.84 E-value=6.1e-05 Score=70.42 Aligned_cols=88 Identities=19% Similarity=0.301 Sum_probs=62.5
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC----------C--C-C------CcccCCHHHHh-hcCCEEEEecC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP----------S--V-S------YPFYSNVCELA-ANCDILIICCG 229 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~----------~--~-~------~~~~~~l~e~l-~~aDvV~l~~p 229 (300)
++|+|||.|.||..+|..|...|.+|.+|+|+.+. . . + .....++++.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 47999999999999999999999999999986421 0 0 1 11234566766 58999999998
Q ss_pred CChhhhhcchHHHHh-cCCCCcEEEEcCCCc
Q 022233 230 LTAETHHMINKQVLS-ALGKEGVVINIGRGP 259 (300)
Q Consensus 230 ~~~~t~~li~~~~l~-~mk~ga~lIn~srg~ 259 (300)
.. .++.++ +++.. .++++..+|.+.-|=
T Consensus 81 s~-~~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 TQ-QLRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HH-HHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 43 444443 34444 667777777776664
No 171
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.84 E-value=0.0001 Score=67.65 Aligned_cols=81 Identities=22% Similarity=0.435 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|..|+.+.... .++.+..++||+|+.++.- .+++..+.
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvGk----p~~i~~~~ 216 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVGR----PHLITPEM 216 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence 5578999999999875 79999999999999998765421 3688999999999999863 25676665
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 022233 243 LSALGKEGVVINIGRGPI 260 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~ 260 (300)
+|+|+++||++.-.+
T Consensus 217 ---vk~GavVIDVGin~~ 231 (287)
T PRK14173 217 ---VRPGAVVVDVGINRV 231 (287)
T ss_pred ---cCCCCEEEEccCccc
Confidence 589999999996654
No 172
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=0.0001 Score=67.59 Aligned_cols=80 Identities=23% Similarity=0.436 Sum_probs=64.8
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhC----CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAF----GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li 238 (300)
+.++.||++.|||-+. +|+++|..|... +..|+..... ..++.+.+++||+|+.+++-. +++
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------T~~l~~~~~~ADIvV~AvG~p----~~i 214 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------SENLTEILKTADIIIAAIGVP----LFI 214 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCCc----Ccc
Confidence 5568999999999985 699999999987 7888876542 136999999999999998643 467
Q ss_pred hHHHHhcCCCCcEEEEcCCCc
Q 022233 239 NKQVLSALGKEGVVINIGRGP 259 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~ 259 (300)
..+. +|+|+++||++--.
T Consensus 215 ~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 215 KEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CHHH---cCCCCEEEEecccc
Confidence 6665 67999999998554
No 173
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=0.00011 Score=67.21 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=64.3
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+.+.... .++.+..++||+|+.+++-. ++|..+.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvGkp----~~i~~~~ 219 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVGKP----NFITADM 219 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccCCc----CcCCHHH
Confidence 5578999999999985 69999999999999998765431 37889999999999998743 4566554
Q ss_pred HhcCCCCcEEEEcCC
Q 022233 243 LSALGKEGVVINIGR 257 (300)
Q Consensus 243 l~~mk~ga~lIn~sr 257 (300)
.|+|+++||+|-
T Consensus 220 ---vk~gavVIDvGi 231 (282)
T PRK14180 220 ---VKEGAVVIDVGI 231 (282)
T ss_pred ---cCCCcEEEEecc
Confidence 679999999984
No 174
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=0.00011 Score=67.52 Aligned_cols=80 Identities=19% Similarity=0.413 Sum_probs=65.2
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+.+.... .++.+..++||+|+.++.-. +++..+.
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvGkp----~~i~~~~ 221 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVGIP----NFVKYSW 221 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence 5568999999999985 69999999999999998765432 36899999999999998743 4566655
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
.|+|+++||++--.
T Consensus 222 ---ik~gaiVIDVGin~ 235 (294)
T PRK14187 222 ---IKKGAIVIDVGINS 235 (294)
T ss_pred ---cCCCCEEEEecccc
Confidence 57999999997543
No 175
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.78 E-value=0.00015 Score=63.33 Aligned_cols=97 Identities=25% Similarity=0.226 Sum_probs=72.0
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC---CCCC---------CC-----------------C--c---
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT---KKPS---------VS-----------------Y--P--- 209 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~---~~~~---------~~-----------------~--~--- 209 (300)
..|..++|+|+|+|.+|..+|..|...|. +++.+|+. .... .+ . .
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 45889999999999999999999999999 68888875 1110 00 0 0
Q ss_pred ---ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccC
Q 022233 210 ---FYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIID 262 (300)
Q Consensus 210 ---~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd 262 (300)
...++.+++.++|+|+-+ ..+.+++.++.......++...++...+-++..+
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~~ 151 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYDD 151 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEeccccCCC
Confidence 012355678899999998 6788899998888888888777777555444443
No 176
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.78 E-value=3.5e-05 Score=73.98 Aligned_cols=95 Identities=24% Similarity=0.376 Sum_probs=69.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------C--CcccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------S--YPFYSNVCELAANCDILIICCGLTAETHH 236 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~~ 236 (300)
+|.++++.|||.|.||.-+|+.|...|. +|++.+|+..... + +....++.+.+.++|+|+.++. +...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 3899999999999999999999999995 7899999876532 2 2234567788999999999953 4445
Q ss_pred cchHHHHhcC---CCCcEEEEcCCCcccCH
Q 022233 237 MINKQVLSAL---GKEGVVINIGRGPIIDE 263 (300)
Q Consensus 237 li~~~~l~~m---k~ga~lIn~srg~~vd~ 263 (300)
+|....+... ++.-++||.+=..-|+.
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavPRdie~ 281 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVPRDVEP 281 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence 5655544332 12258899885554443
No 177
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.78 E-value=9.2e-05 Score=69.90 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=63.8
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------------CC--C------CcccCCHHHHhhcCCEEEEecC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------------SV--S------YPFYSNVCELAANCDILIICCG 229 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------------~~--~------~~~~~~l~e~l~~aDvV~l~~p 229 (300)
++|+|||.|.+|..+|..|...| .+..|.++++. .. + .....++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 58999999999999999999988 56666554321 00 1 1123577888999999999999
Q ss_pred CChhhhhcchHHHHhcCCCCcEEEEcCCCcc
Q 022233 230 LTAETHHMINKQVLSALGKEGVVINIGRGPI 260 (300)
Q Consensus 230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~~ 260 (300)
+..++..+ +++...++++..+|++.-|=-
T Consensus 87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 87 -SHGFRGVL-TELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred -HHHHHHHH-HHHHhhcCCCCEEEEEEeCCc
Confidence 34455444 455566788888999988643
No 178
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.78 E-value=0.00015 Score=66.36 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=65.6
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.++.||++.|||-+. +|+++|..|...|+.|+.+... ..++.+..++||+|+.+++- .++|..+.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------T~nl~~~~~~ADIvI~AvGk----~~~i~~~~ 218 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------TADLAGEVGRADILVAAIGK----AELVKGAW 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence 4568999999999985 6999999999999999876543 23688999999999999973 35677665
Q ss_pred HhcCCCCcEEEEcCCCc
Q 022233 243 LSALGKEGVVINIGRGP 259 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~ 259 (300)
.|+|+++||+|--.
T Consensus 219 ---ik~gaiVIDvGin~ 232 (282)
T PRK14182 219 ---VKEGAVVIDVGMNR 232 (282)
T ss_pred ---cCCCCEEEEeecee
Confidence 67999999998544
No 179
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.77 E-value=5.5e-05 Score=70.98 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=63.4
Q ss_pred CCEEEEEecChhHHHHHHHHHh-C-CCEEEEECCCCCCCC---------C--CcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDA-F-GCSISYNSRTKKPSV---------S--YPFYSNVCELAANCDILIICCGLTAETH 235 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~-~-g~~V~~~~~~~~~~~---------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~ 235 (300)
-+++||||.|.+|+..++.+.. + ..+|.+|+|+.+... + .....+.++++++||+|++++|.+ .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4699999999999998777654 2 347899999865421 2 223578999999999999998753 4
Q ss_pred hcchHHHHhcCCCCcEEEEcCCC
Q 022233 236 HMINKQVLSALGKEGVVINIGRG 258 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~srg 258 (300)
.++..+ .+|+|+.+..++.-
T Consensus 205 P~~~~~---~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKAD---WVSEGTHINAIGAD 224 (325)
T ss_pred cEecHH---HcCCCCEEEecCCC
Confidence 566544 46899999999843
No 180
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.76 E-value=9.9e-05 Score=67.69 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=64.0
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHh----CCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDA----FGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~----~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li 238 (300)
+.++.||++.|||-+. +|+++|..|.. .+++|+...... .++.+.+++||+|+.+++. .++|
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG~----p~li 218 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIGR----PRFV 218 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCC----CCcC
Confidence 5568999999999986 69999999998 788887665321 3699999999999999953 4567
Q ss_pred hHHHHhcCCCCcEEEEcCC
Q 022233 239 NKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~sr 257 (300)
.++.+ |+|+++||++-
T Consensus 219 ~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 219 TADMV---KPGAVVVDVGI 234 (286)
T ss_pred CHHHc---CCCCEEEEeee
Confidence 77665 89999999983
No 181
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.75 E-value=0.00012 Score=68.24 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=73.4
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---CCC-------c-c-----cCCHHHHhhcCCEEEEecCCCh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---VSY-------P-F-----YSNVCELAANCDILIICCGLTA 232 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---~~~-------~-~-----~~~l~e~l~~aDvV~l~~p~~~ 232 (300)
.++|+|||.|.||..+|..|+..|.+|.++.|+.... .+. . . ..+..+....+|+|+++++..+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~ 84 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTA 84 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCC
Confidence 4689999999999999999999999999888764211 010 0 0 0112234678999999998553
Q ss_pred hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233 233 ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278 (300)
Q Consensus 233 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a 278 (300)
+...+ +.+...+++++.++...-| +-.++.|.+.+...++.++
T Consensus 85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 33322 3445557788888887665 4567778777766666544
No 182
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.75 E-value=7.4e-05 Score=70.29 Aligned_cols=94 Identities=26% Similarity=0.331 Sum_probs=70.4
Q ss_pred ccccCCCEEEEEec-ChhHHHHHHHHHh-CCC-EEEEECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCChhh
Q 022233 164 GSKLGGKRVGIVGL-GSIGSLVAKRLDA-FGC-SISYNSRTKKPSV------SYPFYSNVCELAANCDILIICCGLTAET 234 (300)
Q Consensus 164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~~~t 234 (300)
+.++.|++|.|+|. |.||+.+++.|.. .|. +++..+|+..... ......++++.+.++|+|+.+.-..
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~--- 226 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP--- 226 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---
Confidence 56789999999999 8999999999974 564 8888888754321 1112346778999999888775322
Q ss_pred hh-cchHHHHhcCCCCcEEEEcCCCcccCH
Q 022233 235 HH-MINKQVLSALGKEGVVINIGRGPIIDE 263 (300)
Q Consensus 235 ~~-li~~~~l~~mk~ga~lIn~srg~~vd~ 263 (300)
.. +++.+. ++++.++||.|+..=||.
T Consensus 227 ~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 227 KGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 33 366654 479999999999988885
No 183
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.75 E-value=9.9e-05 Score=72.60 Aligned_cols=127 Identities=12% Similarity=0.181 Sum_probs=86.5
Q ss_pred CEEEEEecChhHHHHHHHHHhC--CCEEEEECCCCCCC------------CC------------CcccCCHHHHhhcCCE
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAF--GCSISYNSRTKKPS------------VS------------YPFYSNVCELAANCDI 223 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~--g~~V~~~~~~~~~~------------~~------------~~~~~~l~e~l~~aDv 223 (300)
++|+|||+|.+|..+|-.|+.. |++|+++|.++... .+ .....+..+.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 6899999999999999999976 58899998765321 00 1122456778999999
Q ss_pred EEEecCCCh-----------hhhhcc--hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee---CCCCCC
Q 022233 224 LIICCGLTA-----------ETHHMI--NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD---VFENEP 287 (300)
Q Consensus 224 V~l~~p~~~-----------~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD---V~~~EP 287 (300)
+++|+|... +...+. .+++.+.+++|.++|.-|.-.+=-++.+...|.+.. . +.| +|.+|=
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~--g~~f~v~~~PEr 158 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-K--GINFQILSNPEF 158 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-C--CCCeEEEECCCc
Confidence 999997322 111222 244566789999999999988888888888887631 1 122 356676
Q ss_pred CCCC----CCCCCCCC
Q 022233 288 DVPK----ELXXXXXX 299 (300)
Q Consensus 288 ~~~~----~L~~~~nv 299 (300)
+.+. .+...|.|
T Consensus 159 l~~G~a~~d~~~p~ri 174 (473)
T PLN02353 159 LAEGTAIEDLFKPDRV 174 (473)
T ss_pred cCCCCcccccCCCCEE
Confidence 6542 35555544
No 184
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=0.00017 Score=66.14 Aligned_cols=80 Identities=16% Similarity=0.388 Sum_probs=65.4
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHh--CCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDA--FGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~--~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
+.++.||++.|||-+. +|+++|..|.. .++.|+.+... ..++.+..++||+|+.++.-. ++|..
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------T~~l~~~~k~ADIvV~AvGkp----~~i~~ 219 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------TRDLAAHTRRADIIVAAAGVA----HLVTA 219 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------CCCHHHHHHhCCEEEEecCCc----CccCH
Confidence 5578999999999875 79999999987 78999876543 236999999999999998743 46766
Q ss_pred HHHhcCCCCcEEEEcCCCc
Q 022233 241 QVLSALGKEGVVINIGRGP 259 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~ 259 (300)
+. +|+|+++||++.-.
T Consensus 220 ~~---ik~GavVIDvGin~ 235 (284)
T PRK14193 220 DM---VKPGAAVLDVGVSR 235 (284)
T ss_pred HH---cCCCCEEEEccccc
Confidence 55 67999999998655
No 185
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.75 E-value=4.3e-05 Score=73.92 Aligned_cols=89 Identities=22% Similarity=0.348 Sum_probs=65.7
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------C-C--cccCCHHHHhhcCCEEEEecCCChhhh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------S-Y--PFYSNVCELAANCDILIICCGLTAETH 235 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~-~--~~~~~l~e~l~~aDvV~l~~p~~~~t~ 235 (300)
.+.|+++.|||.|.||+.+++.|...|. +|++++|+..... + . ..+.++.+.+.++|+|+.|++.. +
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 4789999999999999999999999996 7999999865321 1 1 12345677899999999997643 4
Q ss_pred hcchHHHHhcCCCCcEEEEcCCCc
Q 022233 236 HMINKQVLSALGKEGVVINIGRGP 259 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~srg~ 259 (300)
.+|..+... .+..++||.+=..
T Consensus 255 ~vi~~~~~~--~~~~~~iDLavPR 276 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDISIPQ 276 (414)
T ss_pred eeECHHHhC--CCCeEEEEeCCCC
Confidence 456655543 2456888887543
No 186
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.70 E-value=7.8e-05 Score=69.31 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=64.7
Q ss_pred CCCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC---------CCcc-cCCHHHHhhcCCEEEEecCCChhhh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV---------SYPF-YSNVCELAANCDILIICCGLTAETH 235 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~---------~~~~-~~~l~e~l~~aDvV~l~~p~~~~t~ 235 (300)
..++++|||.|.+|+..++.+.. ++. +|.+|+|+.+... +... ..++++++++||+|+.++|.+ +
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46799999999999999999874 665 7899999865321 1111 467899999999999998754 4
Q ss_pred hcchHHHHhcCCCCcEEEEcCCC
Q 022233 236 HMINKQVLSALGKEGVVINIGRG 258 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~srg 258 (300)
.++.. .+|||+.++.+|.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 56653 37999999999843
No 187
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.70 E-value=0.00014 Score=67.70 Aligned_cols=117 Identities=18% Similarity=0.238 Sum_probs=97.4
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CCcccCCHHHHh---hcCCEEEEecCCChhhhh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SYPFYSNVCELA---ANCDILIICCGLTAETHH 236 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~e~l---~~aDvV~l~~p~~~~t~~ 236 (300)
..||+||++.||+.++.+....|+.|.+|+|+..+.. ......+++|++ +.--+|++.+-....+..
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 4799999999999999999999999999999865421 123356888874 667788888776666665
Q ss_pred cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233 237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287 (300)
Q Consensus 237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP 287 (300)
+| +++...|.+|-++||-+-...-|+..-.+.|.+..|-..+.-|-..|-
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEE 136 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEE 136 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccc
Confidence 55 678899999999999999999999999999999998889988887764
No 188
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.69 E-value=0.0002 Score=66.04 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=63.4
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhC----CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAF----GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li 238 (300)
+.++.||++.|||-+. +|+++|..|... ++.|+..... ..++.+..++||+|+.++-- .+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------T~~l~~~~~~ADIvIsAvGk----p~~i 218 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------TDDLAAKTRRADIVVAAAGV----PELI 218 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCC----cCcc
Confidence 5568999999999985 699999999866 7889875432 13689999999999999853 3467
Q ss_pred hHHHHhcCCCCcEEEEcCCCc
Q 022233 239 NKQVLSALGKEGVVINIGRGP 259 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~ 259 (300)
..+. +|+|+++||++--.
T Consensus 219 ~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 219 DGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CHHH---cCCCCEEEEccccc
Confidence 6654 68999999998443
No 189
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.67 E-value=0.00011 Score=68.94 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=59.7
Q ss_pred EEEEecChhHHHHHHHHHh-CCCEEEEE-CCCCCC------CCC------------------CcccCCHHHHhhcCCEEE
Q 022233 172 VGIVGLGSIGSLVAKRLDA-FGCSISYN-SRTKKP------SVS------------------YPFYSNVCELAANCDILI 225 (300)
Q Consensus 172 vgIiG~G~IG~~~A~~l~~-~g~~V~~~-~~~~~~------~~~------------------~~~~~~l~e~l~~aDvV~ 225 (300)
|||+|||+||+.+++.+.. -+++|.+. |..++. ..+ .....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999774 35787654 433221 001 111346899999999999
Q ss_pred EecCCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233 226 ICCGLTAETHHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 226 l~~p~~~~t~~li~~~~l~~mk~ga~lIn~s 256 (300)
.|.| .+.+..+++.+..|+++++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 9865 556678889999999999888653
No 190
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.00019 Score=67.90 Aligned_cols=118 Identities=22% Similarity=0.335 Sum_probs=84.3
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CcccCCHHHHhhcCCEE
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------------------------S-YPFYSNVCELAANCDIL 224 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~l~~aDvV 224 (300)
.+|||||+|-||-++|-.+...|++|+++|.+..... + .....+.+ .++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence 7999999999999999999999999999998764311 0 01112333 35599999
Q ss_pred EEecCCChhhh-------hcc--hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC--CceEEEeeCC---CCCCCCC
Q 022233 225 IICCGLTAETH-------HMI--NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG--EIKGAGLDVF---ENEPDVP 290 (300)
Q Consensus 225 ~l~~p~~~~t~-------~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~--~i~~a~LDV~---~~EP~~~ 290 (300)
++|+|. |-+. .+. .+...+.||+|.++|==|+-.+=.++.++.-|.+. .+. .+-|.| .+|=..|
T Consensus 89 iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 999993 3222 122 24466789999999999999999999999888774 343 445643 5554333
No 191
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.65 E-value=2.8e-05 Score=60.55 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=56.5
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC--CC-CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK--PS-VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~--~~-~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
.++|++|.|||.|.+|..-++.|...|.+|+++++... +. ... .....++.+.++|+|+++.+. ++ +++..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~-~~~~~~~~l~~~~lV~~at~d-~~----~n~~i 77 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQL-IRREFEEDLDGADLVFAATDD-PE----LNEAI 77 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEE-EESS-GGGCTTESEEEE-SS--HH----HHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHH-HhhhHHHHHhhheEEEecCCC-HH----HHHHH
Confidence 58899999999999999999999999999999988731 11 111 112345668889999987653 33 34444
Q ss_pred HhcCCCCcEEEEcC
Q 022233 243 LSALGKEGVVINIG 256 (300)
Q Consensus 243 l~~mk~ga~lIn~s 256 (300)
....+.-.+++|++
T Consensus 78 ~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 78 YADARARGILVNVV 91 (103)
T ss_dssp HHHHHHTTSEEEET
T ss_pred HHHHhhCCEEEEEC
Confidence 45555456778875
No 192
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.64 E-value=0.00029 Score=64.86 Aligned_cols=80 Identities=19% Similarity=0.373 Sum_probs=63.6
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhC----CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAF----GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li 238 (300)
+.++.||++.|||-+. +|+++|..|... ++.|+...... .++.+..++||+|+.++.-. ++|
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvGkp----~~i 218 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALGQP----EFV 218 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccCCc----Ccc
Confidence 4568999999999985 699999999876 68888764321 36899999999999998743 456
Q ss_pred hHHHHhcCCCCcEEEEcCCCc
Q 022233 239 NKQVLSALGKEGVVINIGRGP 259 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~ 259 (300)
..+. .|+|+++||+|--.
T Consensus 219 ~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 219 KADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CHHH---cCCCCEEEEecCcc
Confidence 6544 68999999998543
No 193
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.62 E-value=0.00028 Score=65.07 Aligned_cols=80 Identities=20% Similarity=0.400 Sum_probs=63.4
Q ss_pred ccccCCCEEEEEecCh-hHHHHHHHHHhC----CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233 164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAF----GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li 238 (300)
+.++.||++.|||-+. +|+++|..|... ++.|+..... ..++.+..++||+|+.++.- .+++
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------T~~l~~~~~~ADIvVsAvGk----p~~i 222 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------SKNLARHCQRADILIVAAGV----PNLV 222 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------CcCHHHHHhhCCEEEEecCC----cCcc
Confidence 5578999999999885 799999999977 6888775432 13688999999999999853 3457
Q ss_pred hHHHHhcCCCCcEEEEcCCCc
Q 022233 239 NKQVLSALGKEGVVINIGRGP 259 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~ 259 (300)
..+. +|+|+++||++.-.
T Consensus 223 ~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 223 KPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred CHHH---cCCCCEEEecCCCc
Confidence 6554 67999999998443
No 194
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00017 Score=68.87 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=74.5
Q ss_pred CEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCCC---------------CCcccCCHHHHhhcCCEEEEecCCChh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPSV---------------SYPFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~---------------~~~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
++|.|||.|.||+.+|..|++.| .+|++-+|+..... .+.....+.+++++.|+|+.++|..-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 68999999999999999999988 89999999854311 112234678899999999999985533
Q ss_pred hhhcchHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 234 THHMINKQVL-SALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 234 t~~li~~~~l-~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
. ..+ +.++.|.-.+|+|-.+.-- .++.+..++.++.
T Consensus 82 ~------~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit 118 (389)
T COG1748 82 L------TILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGIT 118 (389)
T ss_pred H------HHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeE
Confidence 2 232 5567888899998776553 6666666666653
No 195
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.58 E-value=0.00019 Score=67.37 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=63.6
Q ss_pred CCEEEEEecChhHHHHHHHHH-hCCC-EEEEECCCCCCCC----------CC--cccCCHHHHhhcCCEEEEecCCChhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLD-AFGC-SISYNSRTKKPSV----------SY--PFYSNVCELAANCDILIICCGLTAET 234 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~-~~g~-~V~~~~~~~~~~~----------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t 234 (300)
.++++|||.|.+|+..++.+. ..+. +|.+|+|+.+... +. ....++++++++||+|+.++|..
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--- 205 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--- 205 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC---
Confidence 569999999999999999997 4675 6899999865421 22 22467899999999999998754
Q ss_pred hhcchHHHHhcCCCCcEEEEcCC
Q 022233 235 HHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 235 ~~li~~~~l~~mk~ga~lIn~sr 257 (300)
..+|..+. +|+|+.+..++.
T Consensus 206 ~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred CcEecHHH---cCCCcEEEeeCC
Confidence 35665443 689988887763
No 196
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.58 E-value=0.00024 Score=70.11 Aligned_cols=100 Identities=22% Similarity=0.237 Sum_probs=68.9
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCC----C-cccCCHHHH--hhcCCEEEEecCCChhhhh
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVS----Y-PFYSNVCEL--AANCDILIICCGLTAETHH 236 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~----~-~~~~~l~e~--l~~aDvV~l~~p~~~~t~~ 236 (300)
+..+.+++++|+|.|.+|++++..|...|++|.+++|+..+... . ....+++++ +.++|+|++++|....
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~--- 403 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT--- 403 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence 34578999999999999999999999999999999887543210 0 011122322 5789999999997653
Q ss_pred cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233 237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI 275 (300)
Q Consensus 237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i 275 (300)
+.. .+. .+++|+.-.+... . |.++.++.++
T Consensus 404 -~~~-~l~-----~~v~D~~Y~P~~T-~-ll~~A~~~G~ 433 (477)
T PRK09310 404 -IPK-AFP-----PCVVDINTLPKHS-P-YTQYARSQGS 433 (477)
T ss_pred -chh-HHh-----hhEEeccCCCCCC-H-HHHHHHHCcC
Confidence 222 222 3889998877543 3 6666666554
No 197
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.58 E-value=0.00028 Score=56.32 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=53.8
Q ss_pred EEEEEe-cChhHHHHHHHHHhC-CCEEEEE-CCCCCCCC------C-C--cccCCHH-HHh--hcCCEEEEecCCChhhh
Q 022233 171 RVGIVG-LGSIGSLVAKRLDAF-GCSISYN-SRTKKPSV------S-Y--PFYSNVC-ELA--ANCDILIICCGLTAETH 235 (300)
Q Consensus 171 ~vgIiG-~G~IG~~~A~~l~~~-g~~V~~~-~~~~~~~~------~-~--~~~~~l~-e~l--~~aDvV~l~~p~~~~t~ 235 (300)
++||+| .|.+|+.+++.+... ++++... +++..... + . ....+.+ +.+ .++|+|++++|.....+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 589999 599999999999874 7777644 43321111 0 1 0011111 122 58999999999775444
Q ss_pred hcchHHHHhcCCCCcEEEEcC
Q 022233 236 HMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~s 256 (300)
.+ ......+++|.++||+|
T Consensus 81 -~~-~~~~~~~~~g~~viD~s 99 (122)
T smart00859 81 -IA-PLLPKAAEAGVKVIDLS 99 (122)
T ss_pred -HH-HHHHhhhcCCCEEEECC
Confidence 22 13455679999999998
No 198
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.56 E-value=0.00018 Score=67.44 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=63.0
Q ss_pred CCCEEEEEecChhHHHHHHHHH-hCCC-EEEEECCCCCCCC----------CC--cccCCHHHHhhcCCEEEEecCCChh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLD-AFGC-SISYNSRTKKPSV----------SY--PFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~-~~g~-~V~~~~~~~~~~~----------~~--~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
..++++|||.|.+|+..++.+. ..+. +|.+|+|+++... +. ..+.+++++++++|+|++++|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 3679999999999999988765 4565 6889999865321 11 23567899999999999998855
Q ss_pred hhhcchHHHHhcCCCCcEEEEcCC
Q 022233 234 THHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 234 t~~li~~~~l~~mk~ga~lIn~sr 257 (300)
+.++. +.+|+|+.++.++.
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred -CcchH----HhcCCCcEEEecCC
Confidence 34554 55799999988865
No 199
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.55 E-value=0.00046 Score=64.58 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=70.9
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCCC-------------CC----cccCCHHHHhhcCCEEEEec
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPSV-------------SY----PFYSNVCELAANCDILIICC 228 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~-------------~~----~~~~~l~e~l~~aDvV~l~~ 228 (300)
+..++|+|||.|.||..+|..+...| .++..+|.+.+... +. ....+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999999888 58889998654311 10 1123555 779999999998
Q ss_pred --CCCh-hhh--------hcchHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCceEEE--ee
Q 022233 229 --GLTA-ETH--------HMINKQ---VLSALGKEGVVINIGRGPIIDEQELVRCLV--QGEIKGAG--LD 281 (300)
Q Consensus 229 --p~~~-~t~--------~li~~~---~l~~mk~ga~lIn~srg~~vd~~aL~~aL~--~~~i~~a~--LD 281 (300)
|..+ .++ .++ .+ .+....|.+++|+++-..-+-...+.+... ..++.|.+ ||
T Consensus 82 g~~~~~g~~r~dll~~n~~i~-~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIM-KSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 4333 111 111 12 233346788899986544333444444321 35666555 55
No 200
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.54 E-value=0.00019 Score=62.57 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=47.6
Q ss_pred CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCC
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK 248 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ 248 (300)
++++|||- |.||+.+++.++..|+.|. +++||+|++|+|... +..++ +.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~~-~~~~i-----~~~~- 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPIDA-ALNYI-----ESYD- 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHHH-HHHHH-----HHhC-
Confidence 48999999 9999999999999999885 368999999999543 23333 2232
Q ss_pred CcEEEEcCCCcc
Q 022233 249 EGVVINIGRGPI 260 (300)
Q Consensus 249 ga~lIn~srg~~ 260 (300)
.+++|++.-.-
T Consensus 53 -~~v~Dv~SvK~ 63 (197)
T PRK06444 53 -NNFVEISSVKW 63 (197)
T ss_pred -CeEEeccccCH
Confidence 37889986553
No 201
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.52 E-value=0.00092 Score=62.47 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=66.6
Q ss_pred CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCC-CCC---CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTK-KPS---VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL 243 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~-~~~---~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l 243 (300)
.+|||||+|+||+.+++.+... ++++. ++++++ ... .+.....+.++++.+.|+|++|+|....- ....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHHH
Confidence 5999999999999999999865 78876 578874 211 12223356777888999999999865432 3344
Q ss_pred hcCCCCcEEEEcCCC--cccC-HHHHHHHHHh-CCce
Q 022233 244 SALGKEGVVINIGRG--PIID-EQELVRCLVQ-GEIK 276 (300)
Q Consensus 244 ~~mk~ga~lIn~srg--~~vd-~~aL~~aL~~-~~i~ 276 (300)
..++.|.-+|+..-- .+-+ .+.|-++.++ |++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 556677777777432 1123 3344445553 5654
No 202
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.52 E-value=0.00036 Score=72.11 Aligned_cols=114 Identities=13% Similarity=0.154 Sum_probs=83.4
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN 220 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~ 220 (300)
++|+|||.|.||..+|..+...|++|+.+|++.+... + .....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999998764310 0 0112345 45799
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP 287 (300)
||+|+=++|-..+.+.-+-+++-+.++++++|...+.+ +....|.+.+.... +..++--|.+-+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~-r~~g~Hff~P~~ 456 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRPE-NFCGMHFFNPVH 456 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCc-cEEEEecCCccc
Confidence 99999999999888877778888889999887554433 44556667765432 236677665443
No 203
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.48 E-value=0.0002 Score=62.78 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=49.7
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------C-Cc---ccCCHHHHhhcCCEEEEecCCC
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------S-YP---FYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~-~~---~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
--++.|++|.|||.|.+|..-++.|...|.+|+++++...+.. + .. .... .+.+..+|+|+.+....
T Consensus 4 ~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 4 FANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDDE 80 (205)
T ss_pred EEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCCH
Confidence 4579999999999999999999999999999999987654211 1 11 1112 34578899988875543
No 204
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.47 E-value=0.0003 Score=61.55 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=50.4
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------C-Ccc-cCCH-HHHhhcCCEEEEecCCCh
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------S-YPF-YSNV-CELAANCDILIICCGLTA 232 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~-~~~-~~~l-~e~l~~aDvV~l~~p~~~ 232 (300)
.-++.|++|.|||.|.+|...++.|...|.+|+++++...+.. + ... ...+ ++.+..+|+|+.++...+
T Consensus 5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 5679999999999999999999999999999999987543210 1 110 0111 345788998888876443
No 205
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.47 E-value=0.00088 Score=62.16 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=82.7
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CcccCCHHHHhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------------VS-------------YPFYSNVCELAA 219 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------------~~-------------~~~~~~l~e~l~ 219 (300)
-++|||||.|.||+.+|..+..-|+.|..+|++++.. .+ .....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 3699999999999999999999779999999884320 00 01112222 689
Q ss_pred cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288 (300)
Q Consensus 220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~ 288 (300)
+||+|+=++|-+-+.++-+-+++-...+++++|= |||+ +.-.++.++++... ...++=-|.+-|+
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~rpe-r~iG~HFfNP~~~ 147 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALKRPE-RFIGLHFFNPVPL 147 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhCCch-hEEEEeccCCCCc
Confidence 9999999999998888777777777788888864 4443 44566777774433 3577776765543
No 206
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.46 E-value=0.00022 Score=65.71 Aligned_cols=103 Identities=18% Similarity=0.121 Sum_probs=71.4
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCCC-----------C--cccCCHHHHhhcCCEEEEecCCCh
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSVS-----------Y--PFYSNVCELAANCDILIICCGLTA 232 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~~-----------~--~~~~~l~e~l~~aDvV~l~~p~~~ 232 (300)
+.++++.|||.|.+|++++..|...|+ +|++++|+...... . ....++.+.++++|+||.++|..-
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm 204 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM 204 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence 567899999999999999999999998 79999998653210 0 112345567889999999998642
Q ss_pred hh--hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 233 ET--HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 233 ~t--~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
.. ...++. ..++++.+++|+.-.+. .+.-|..|-+.|
T Consensus 205 ~~~~~~~~~~---~~l~~~~~v~DivY~P~-~T~ll~~A~~~G 243 (284)
T PRK12549 205 AKHPGLPLPA---ELLRPGLWVADIVYFPL-ETELLRAARALG 243 (284)
T ss_pred CCCCCCCCCH---HHcCCCcEEEEeeeCCC-CCHHHHHHHHCC
Confidence 11 112333 34678889999987663 444444444444
No 207
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.45 E-value=0.0011 Score=53.33 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=58.8
Q ss_pred CEEEEEec-ChhHHHHHHHHHh-CCCEEE-EECCCCCCC-------------CCCcccCCHHHHhhcCCEEEEecCCChh
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDA-FGCSIS-YNSRTKKPS-------------VSYPFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~-~g~~V~-~~~~~~~~~-------------~~~~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
++|+|+|+ |+||+.+++.+.. -|+++. ++++...+. .+.....++++++..+|+|+-.. +++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence 48999999 9999999999997 678864 567665221 13344678999999999998876 333
Q ss_pred -hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 234 -THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 234 -t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
+...+ +.. ++.|.-+|-..+|---++.+.++.+.+
T Consensus 79 ~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 79 AVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred HhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 22222 222 334555565556664444344444433
No 208
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.43 E-value=0.00044 Score=64.35 Aligned_cols=111 Identities=16% Similarity=0.245 Sum_probs=71.6
Q ss_pred CEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----cccCCHHHHhhcCCEEEEecCCC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SY----PFYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~----~~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
++|+|||.|.||..+|..+...|. +|..+|...+... .. ....+.++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999998776 8999987543211 00 11245666 79999999998832
Q ss_pred hh-----------hhhcchH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEEE--ee
Q 022233 232 AE-----------THHMINK--QVLSALGKEGVVINIGRGPIIDEQELVRC--LVQGEIKGAG--LD 281 (300)
Q Consensus 232 ~~-----------t~~li~~--~~l~~mk~ga~lIn~srg~~vd~~aL~~a--L~~~~i~~a~--LD 281 (300)
.. +..++.. +.+....+.+++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 11 1112211 11223357889999976554555555555 4455676765 66
No 209
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.43 E-value=0.00016 Score=67.54 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=55.2
Q ss_pred CEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCC---------CC--CcccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPS---------VS--YPFYSNVCELAANCDILIICCGLTAETHH 236 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~---------~~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~~ 236 (300)
++++|||.|..++.-++.+.. ++. +|.+|+|++... .+ .....+.++++++||+|+.++|.+..+ .
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 489999999999999998874 665 789999986431 11 234578999999999999998755432 5
Q ss_pred cchHHHHhcCCCCcEEEEcCCCcc
Q 022233 237 MINKQVLSALGKEGVVINIGRGPI 260 (300)
Q Consensus 237 li~~~~l~~mk~ga~lIn~srg~~ 260 (300)
+++. +.+++|+.++.++...+
T Consensus 208 ~~~~---~~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDA---EWLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-G---GGS-TT-EEEE-S-SST
T ss_pred cccH---HHcCCCcEEEEecCCCC
Confidence 6654 36789999999987654
No 210
>PRK06046 alanine dehydrogenase; Validated
Probab=97.42 E-value=0.00034 Score=65.62 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=61.4
Q ss_pred CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CcccCCHHHHhhcCCEEEEecCCChhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV----------S--YPFYSNVCELAANCDILIICCGLTAET 234 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~----------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t 234 (300)
-++|||||.|.+|+..++.+.. .+. +|.+|+|+..... + ...+.+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4599999999999999998874 455 5678999864311 1 123568889887 99999998864
Q ss_pred hhcchHHHHhcCCCCcEEEEcCC
Q 022233 235 HHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 235 ~~li~~~~l~~mk~ga~lIn~sr 257 (300)
..++..+ .+|+|+.+..++.
T Consensus 205 ~P~~~~~---~l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAE---WIKEGTHINAIGA 224 (326)
T ss_pred CcEecHH---HcCCCCEEEecCC
Confidence 4667654 4589999888874
No 211
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.41 E-value=0.00034 Score=65.41 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=63.2
Q ss_pred CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC---------CC--cccCCHHHHhhcCCEEEEecCCChhhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV---------SY--PFYSNVCELAANCDILIICCGLTAETH 235 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~---------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~ 235 (300)
-++++|||.|..++..++.+.. +.. +|.+|+|+++... +. ....+.++++++||+|+.+++. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence 4699999999999999998774 343 7999999876421 11 2246899999999999999763 35
Q ss_pred hcchHHHHhcCCCCcEEEEcC
Q 022233 236 HMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~s 256 (300)
.+|..+ .+|+|+.++.++
T Consensus 205 P~~~~~---~l~~G~hi~~iG 222 (315)
T PRK06823 205 PLLQAE---DIQPGTHITAVG 222 (315)
T ss_pred ceeCHH---HcCCCcEEEecC
Confidence 677654 468999999887
No 212
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.41 E-value=0.00061 Score=70.64 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=83.2
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN 220 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~ 220 (300)
++|+|||.|.||..+|..+...|++|..+|++++... + .....++ +.+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence 5899999999999999999999999999998764310 0 0112345 35799
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCC
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~E 286 (300)
||+|+=++|-+.+.+.-+-+++-+.++++++|..... -++...|.+.+.... ...++.-|.+-
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~p~-r~ig~Hff~P~ 477 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSRPE-KVIGMHYFSPV 477 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCCcc-ceEEEeccCCc
Confidence 9999999999988887777888888999988653322 245566777765433 24778877643
No 213
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.41 E-value=0.00067 Score=61.81 Aligned_cols=102 Identities=22% Similarity=0.309 Sum_probs=63.1
Q ss_pred CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCC-----C--CCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPS-----V--SYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~-----~--~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
++|||||+|.||+.+++.+... ++++. ++++..... . +...+.+++++-.+.|+|+.|.|.....+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e----- 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKE----- 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHH-----
Confidence 4899999999999999999875 56653 333322110 1 23345678887456899999988543322
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHhCCce
Q 022233 241 QVLSALGKEGVVINIGRGPIIDE---QELVRCLVQGEIK 276 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~vd~---~aL~~aL~~~~i~ 276 (300)
-....++.|.-++-.+-|.+.|. +.|.++.++++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 22333455555555555655543 4566666666543
No 214
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.40 E-value=0.00098 Score=60.43 Aligned_cols=98 Identities=22% Similarity=0.282 Sum_probs=64.3
Q ss_pred CEEEEEecChhHHHHHHHHHhC---CCEEE-EECCCCCCC----CCCcccCCHHHH-hhcCCEEEEecCCChhhhhcchH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAF---GCSIS-YNSRTKKPS----VSYPFYSNVCEL-AANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~---g~~V~-~~~~~~~~~----~~~~~~~~l~e~-l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
++|||||+|.||+.+++.+..- ++++. ++++..+.. .......+++++ ....|+|+=|..-.. +-+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~a-----v~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQA-----IAE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHH-----HHH
Confidence 5899999999999999998753 35554 456554221 123446789997 577999988875222 112
Q ss_pred HHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHh
Q 022233 241 QVLSALGKEGVVINIGRGPIID---EQELVRCLVQ 272 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~vd---~~aL~~aL~~ 272 (300)
-..+.++.|.-++=.|-|.+.| ++.|.++.++
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 2233355677777788888887 4555555554
No 215
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00072 Score=63.41 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=66.2
Q ss_pred CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CcccCCHHHHhhcCCEEEEecCCChhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV----------S--YPFYSNVCELAANCDILIICCGLTAET 234 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~----------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t 234 (300)
-++++|||.|..++.-++.++. ++. +|.+|+|+++... + +....+.++++++||+|+.++|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 3589999999999999999884 565 7899999876421 1 2356789999999999999988665
Q ss_pred hhcchHHHHhcCCCCcEEEEcCC
Q 022233 235 HHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 235 ~~li~~~~l~~mk~ga~lIn~sr 257 (300)
.++..+. ++||+.+..++.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 6676554 669999999985
No 216
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.38 E-value=0.00083 Score=69.42 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=83.0
Q ss_pred CEEEEEecChhHHHHHHHHH-hCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhh
Q 022233 170 KRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAA 219 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~-~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~ 219 (300)
++|+|||.|.||..+|..+. ..|++|+.+|.+++... + .....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 58999999999999999998 78999999998754210 0 0112344 5679
Q ss_pred cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCC
Q 022233 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286 (300)
Q Consensus 220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~E 286 (300)
+||+|+=++|-+.+.+.-+-+++-+.++++++|...+.+ +....|.+.+.... ..+++--|.+-
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~-r~ig~Hff~P~ 452 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARPE-QVIGLHYFSPV 452 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCccc-ceEEEecCCcc
Confidence 999999999999888877777877889999987655444 45566777665432 24777766543
No 217
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.37 E-value=0.00037 Score=55.74 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=52.1
Q ss_pred EEEEEe-cChhHHHHHHHHHhC-CCEEE-EECCCCCCCC------C----C---cccCCHHHHhhcCCEEEEecCCChhh
Q 022233 171 RVGIVG-LGSIGSLVAKRLDAF-GCSIS-YNSRTKKPSV------S----Y---PFYSNVCELAANCDILIICCGLTAET 234 (300)
Q Consensus 171 ~vgIiG-~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~~------~----~---~~~~~l~e~l~~aDvV~l~~p~~~~t 234 (300)
+|+||| .|.+|+.+.++|... .+++. ++.++..... + . .....-.+.+.++|+|++|+|.....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 699999 999999999999974 34554 4555441111 0 0 01111234569999999999854433
Q ss_pred hhcchHHHHhcCCCCcEEEEcCCC
Q 022233 235 HHMINKQVLSALGKEGVVINIGRG 258 (300)
Q Consensus 235 ~~li~~~~l~~mk~ga~lIn~srg 258 (300)
+ +...+ +++|..+||.|.-
T Consensus 81 ~--~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 81 E--LAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp H--HHHHH---HHTTSEEEESSST
T ss_pred H--HHHHH---hhCCcEEEeCCHH
Confidence 3 22222 5789999999743
No 218
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.36 E-value=0.00055 Score=60.24 Aligned_cols=91 Identities=23% Similarity=0.300 Sum_probs=62.5
Q ss_pred CEEEEEecChhHHHHHHHHHhC--CCE-EEEECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAF--GCS-ISYNSRTKKPSV------SYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~--g~~-V~~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
++|||||+|.||+.+.+.+..- +++ +.+||++.++.. +.....+++|++++.|+|+=|.. .++.+.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e---- 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVRE---- 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHH----
Confidence 4799999999999999998842 454 568888766432 22234679999999998888763 223332
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHH
Q 022233 241 QVLSALGKEGVVINIGRGPIIDEQE 265 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~vd~~a 265 (300)
-..+.++.|-=+|-+|-|.+.|+.-
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHH
Confidence 2334456666667777788876543
No 219
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.35 E-value=0.0014 Score=67.76 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=81.5
Q ss_pred CEEEEEecChhHHHHHHHHH-hCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhh
Q 022233 170 KRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAA 219 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~-~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~ 219 (300)
++|+|||.|.||+.+|..+. ..|++|+.+|.+++... + .....++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999988 48999999998764210 0 0112344 4679
Q ss_pred cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287 (300)
Q Consensus 220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP 287 (300)
+||+|+=++|-+.+.+.-+-+++-+.++++++|.....+ +....|.+++.... ...++--|.+-+
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~-r~~g~HffnP~~ 448 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPE-NVIGLHYFSPVE 448 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcc-cEEEEecCCccc
Confidence 999999999999888877777777888898876544333 44556666664432 236777665443
No 220
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.34 E-value=0.0022 Score=57.17 Aligned_cols=104 Identities=23% Similarity=0.335 Sum_probs=69.2
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEE-CCCCC----------C------CCC----C--cccCCHHHH-hhc
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN-SRTKK----------P------SVS----Y--PFYSNVCEL-AAN 220 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~-~~~~~----------~------~~~----~--~~~~~l~e~-l~~ 220 (300)
.++.|++|+|.|+|++|+.+|+.|..+|++|++. |.... . ..+ + ....+.+++ -.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 3578999999999999999999999999999844 43110 0 000 0 001122332 246
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
||+++-|.+ .+.|+.+....++ -.+++--+-+++ . ..-.+.|+++.|.
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence 899888864 3447777777776 345666666666 4 5566888888775
No 221
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.31 E-value=0.00064 Score=61.72 Aligned_cols=108 Identities=18% Similarity=0.302 Sum_probs=70.5
Q ss_pred EEEEec-ChhHHHHHHHHHhCC----CEEEEECCCCCCCC-----------CC-----cccCCHHHHhhcCCEEEEecCC
Q 022233 172 VGIVGL-GSIGSLVAKRLDAFG----CSISYNSRTKKPSV-----------SY-----PFYSNVCELAANCDILIICCGL 230 (300)
Q Consensus 172 vgIiG~-G~IG~~~A~~l~~~g----~~V~~~~~~~~~~~-----------~~-----~~~~~l~e~l~~aDvV~l~~p~ 230 (300)
|+|||. |.+|..+|..+...| .+|..+|.+.+... .. ....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999998878 68999998764321 00 1124567899999999996521
Q ss_pred C-----------hhhhhcchHH---HHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHhCCceEEE-eeC
Q 022233 231 T-----------AETHHMINKQ---VLSALGKEGVVINIGRGPIIDEQE--LVRC--LVQGEIKGAG-LDV 282 (300)
Q Consensus 231 ~-----------~~t~~li~~~---~l~~mk~ga~lIn~srg~~vd~~a--L~~a--L~~~~i~~a~-LDV 282 (300)
. ..+-.++ .+ .+....|.+++||.+ .++|.-+ +.+. +...++.|.+ ||.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~-~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIV-KEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 0 0111111 22 233345889999995 5555443 4344 3567788888 775
No 222
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.30 E-value=0.00059 Score=64.16 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=59.9
Q ss_pred CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC----------CC--cccCCHHHHhhcCCEEEEecCCChhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV----------SY--PFYSNVCELAANCDILIICCGLTAET 234 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~----------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t 234 (300)
.++++|||.|.+|+..+..+.. .+. +|.+|+|+.+... +. ....++++++.+||+|++++|..
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--- 208 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--- 208 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence 5799999999999999988874 564 7899999865321 12 22468899999999999998754
Q ss_pred hhcchHHHHhcCCCCcEEEEc
Q 022233 235 HHMINKQVLSALGKEGVVINI 255 (300)
Q Consensus 235 ~~li~~~~l~~mk~ga~lIn~ 255 (300)
..++..+. +++|+.+..+
T Consensus 209 ~p~i~~~~---l~~g~~v~~v 226 (330)
T PRK08291 209 EPILKAEW---LHPGLHVTAM 226 (330)
T ss_pred CcEecHHH---cCCCceEEee
Confidence 35665443 5778766664
No 223
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.30 E-value=0.0013 Score=59.48 Aligned_cols=106 Identities=22% Similarity=0.307 Sum_probs=72.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCC-----C--------------CCCC-----C------cccC
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTK-----K--------------PSVS-----Y------PFYS 212 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~-----~--------------~~~~-----~------~~~~ 212 (300)
+.++.|+||.|-|+|++|+.+|+.|..+|++|+ +.|.+. + .... + ....
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 345889999999999999999999999999988 444210 0 0000 0 0111
Q ss_pred CHHHH-hhcCCEEEEecCCChhhhhcchHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 213 NVCEL-AANCDILIICCGLTAETHHMINKQVLSALG--KEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 213 ~l~e~-l~~aDvV~l~~p~~~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
+.+++ -..|||++-| .+.+.|+.+..+.++ +-.+++-.+-|++-+ +-.+.|+++.|.
T Consensus 113 ~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 113 EGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred CCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 33343 3568988887 356778888888774 345677777787644 455778888775
No 224
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.30 E-value=0.00079 Score=62.51 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=62.2
Q ss_pred CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CcccCCHHHHhhcCCEEEEecCCChhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV----------S--YPFYSNVCELAANCDILIICCGLTAET 234 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~----------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t 234 (300)
-+++||||.|..|+..++.+.. +.. +|.+|+|++.... + .....++++++++||+|+.++|. +
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~ 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence 4699999999999999888775 454 7899999876421 2 22357899999999999999774 3
Q ss_pred hhcchHHHHhcCCCCcEEEEcCC
Q 022233 235 HHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 235 ~~li~~~~l~~mk~ga~lIn~sr 257 (300)
+.++..+ .+|||+.+.-++.
T Consensus 194 ~P~~~~~---~l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRK---YLGDEYHVNLAGS 213 (301)
T ss_pred CcEecHH---HcCCCceEEecCC
Confidence 4677655 4678877666653
No 225
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.29 E-value=0.00063 Score=70.31 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=81.4
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN 220 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~ 220 (300)
++|+|||.|.||..+|..+...|++|..+|++.+... + .....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 4899999999999999999999999999998754210 0 0112344 45799
Q ss_pred CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCC
Q 022233 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286 (300)
Q Consensus 221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~E 286 (300)
||+|+=++|-+-+.+.-+-+++-+.++++++|-....+ ++-.+|...++... ...++=-|.+-
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~p~-r~ig~Hff~P~ 455 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKRPE-NFCGMHFFNPV 455 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCcc-cEEEEecCCCc
Confidence 99999999998888877777877888999887554433 45566667665432 23566655543
No 226
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.29 E-value=0.00036 Score=55.06 Aligned_cols=102 Identities=26% Similarity=0.347 Sum_probs=69.3
Q ss_pred EEEEEecChhHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCcccCCHHHHhh--cCCEEEEecCCChhhhhcch
Q 022233 171 RVGIVGLGSIGSLVAKRLDAF--GCSIS-YNSRTKKPS------VSYPFYSNVCELAA--NCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~--g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~ 239 (300)
+|||||+|.+|+.....+... ++++. ++++++... .+...+.+++++++ +.|+|++++|...... +-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~ 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence 799999999999999888866 45664 678875432 24456789999998 7899999999755444 22
Q ss_pred HHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHhCCce
Q 022233 240 KQVLSALGKEGVVINI-GRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 240 ~~~l~~mk~ga~lIn~-srg~~vd~~aL~~aL~~~~i~ 276 (300)
...++.=+ .+++.- ---.+-+.++|.++.++.+..
T Consensus 80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 33333211 455553 123556777777777765543
No 227
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.28 E-value=0.00061 Score=65.24 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=64.8
Q ss_pred CCEEEEEecChhHHHHHHHHHh-CC-C-EEEEECCCCCCCC-----------C---CcccCCHHHHhhcCCEEEEecCCC
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDA-FG-C-SISYNSRTKKPSV-----------S---YPFYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~-~g-~-~V~~~~~~~~~~~-----------~---~~~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
-++++|||.|.+++..++.+.. +. . +|.+|+|++.... + .....+.++++++||+|+.+++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4699999999999999998876 43 4 7999999875311 1 223578999999999999998754
Q ss_pred h---hhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233 232 A---ETHHMINKQVLSALGKEGVVINIGRG 258 (300)
Q Consensus 232 ~---~t~~li~~~~l~~mk~ga~lIn~srg 258 (300)
. .+..+|..+ .+|+|+.++.++.-
T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~ 261 (379)
T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAAC 261 (379)
T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCcc
Confidence 3 344677654 46799888776553
No 228
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.25 E-value=0.0031 Score=55.85 Aligned_cols=104 Identities=23% Similarity=0.233 Sum_probs=68.3
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCC----------CC------CCCCccc-----CCHHHHh-hcC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTK----------KP------SVSYPFY-----SNVCELA-ANC 221 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~----------~~------~~~~~~~-----~~l~e~l-~~a 221 (300)
.++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+. +. ......+ .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 45789999999999999999999999999665 556544 10 0011111 1112332 478
Q ss_pred CEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
|+++-|.+. +.|+.+....++ -.+++--+-+++-+ .-.+.|+++.+.
T Consensus 99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 999988763 357777777776 34666677777654 345666666653
No 229
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.22 E-value=0.001 Score=62.91 Aligned_cols=84 Identities=12% Similarity=0.203 Sum_probs=61.4
Q ss_pred CCEEEEEecChhHHHHHHHHH-hCCC-EEEEECCCCCCCC---------C--CcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLD-AFGC-SISYNSRTKKPSV---------S--YPFYSNVCELAANCDILIICCGLTAETH 235 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~-~~g~-~V~~~~~~~~~~~---------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~ 235 (300)
-++++|||.|..++..++.+. -+.. +|.+|+|+++... + .....++++++++||+|++++|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 458999999999999888666 4555 7899999875421 1 223578999999999999998733 222
Q ss_pred hcchHHHHhcCCCCcEEEEcC
Q 022233 236 HMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~s 256 (300)
.++..+ .+|+|+.+.-++
T Consensus 208 Pvl~~~---~lkpG~hV~aIG 225 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVG 225 (346)
T ss_pred ceecHH---HcCCCcEEEecC
Confidence 456544 468999877765
No 230
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.15 E-value=0.0027 Score=60.43 Aligned_cols=105 Identities=15% Similarity=0.260 Sum_probs=80.8
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------------CC-------------CcccCCHHHHhhcCCEE
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------------VS-------------YPFYSNVCELAANCDIL 224 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------------~~-------------~~~~~~l~e~l~~aDvV 224 (300)
|+|.|+|.|-+|...+..|+.+|++|+..|..+.+. .+ .....+.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 589999999999999999999999999998765321 00 12345788899999999
Q ss_pred EEecCCChhhhhcc--------hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233 225 IICCGLTAETHHMI--------NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE 274 (300)
Q Consensus 225 ~l~~p~~~~t~~li--------~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~ 274 (300)
++++|..+...+-+ -++..+.++..+++|+=|+-.+=-.+.+.+.+.+..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 99999654423322 245667787779999999999888888887776655
No 231
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.14 E-value=0.0011 Score=62.20 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=58.7
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc------cCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF------YSNVCELAANCDILIICCGLTAETHHM 237 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~------~~~l~e~l~~aDvV~l~~p~~~~t~~l 237 (300)
|++|+|+|+|-.|....+.++++|++|+++++++++. .++.. .+.++++-+.+|+|+.++| ....
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~--- 242 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL--- 242 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH---
Confidence 8899999999999999999999999999999987743 12221 1122333344999999998 4432
Q ss_pred chHHHHhcCCCCcEEEEcCCC
Q 022233 238 INKQVLSALGKEGVVINIGRG 258 (300)
Q Consensus 238 i~~~~l~~mk~ga~lIn~srg 258 (300)
...++.++++..++-++=.
T Consensus 243 --~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 243 --EPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --HHHHHHHhcCCEEEEECCC
Confidence 2445556666665555443
No 232
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.14 E-value=0.001 Score=55.90 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=52.3
Q ss_pred ccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---C-Ccc-cCCH-HHHhhcCCEEEEecCCChh
Q 022233 160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---S-YPF-YSNV-CELAANCDILIICCGLTAE 233 (300)
Q Consensus 160 ~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---~-~~~-~~~l-~e~l~~aDvV~l~~p~~~~ 233 (300)
|+ ..+|+|++|.|||.|.+|...++.|...|++|+++++...+.. + ... ...+ ++-+.++|+|+.++. +++
T Consensus 6 P~--~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~-d~e 82 (157)
T PRK06719 6 PL--MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN-QHA 82 (157)
T ss_pred ce--EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCC-CHH
Confidence 65 6789999999999999999999999999999998875432210 1 000 1112 234688998888765 444
Q ss_pred hhhcc
Q 022233 234 THHMI 238 (300)
Q Consensus 234 t~~li 238 (300)
+...+
T Consensus 83 ~N~~i 87 (157)
T PRK06719 83 VNMMV 87 (157)
T ss_pred HHHHH
Confidence 33333
No 233
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.13 E-value=0.0016 Score=56.98 Aligned_cols=80 Identities=26% Similarity=0.289 Sum_probs=57.0
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------C----------------C-C-----
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------V----------------S-Y----- 208 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~----------------~-~----- 208 (300)
..|.+++|.|+|+|.+|..+|+.|...|. +++.+|+..-.. . + .
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 45899999999999999999999999998 788887652100 0 0 0
Q ss_pred -cc--cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233 209 -PF--YSNVCELAANCDILIICCGLTAETHHMINKQVLSA 245 (300)
Q Consensus 209 -~~--~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~ 245 (300)
.. ..+++++++++|+|+.++ .+..++.++++...+.
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~-d~~~~r~~l~~~~~~~ 135 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCT-DNFATRYLINDACVAL 135 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 00 123456788999998886 4566777777655444
No 234
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.08 E-value=0.0042 Score=56.30 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=46.1
Q ss_pred CEEEEEec-ChhHHHHHHHHHhC-CCEEE-EECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCC
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAF-GCSIS-YNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGL 230 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~ 230 (300)
++|+|+|+ |.||+.+++.+... ++++. ++++..... .+...+.+++++++.+|+|+.++|.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p 70 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTP 70 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCH
Confidence 48999998 99999999998864 68875 477665332 1233457899999899999977753
No 235
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.0013 Score=62.00 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=46.5
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CC------ccc---CCHHHHhhcCCEEEE
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SY------PFY---SNVCELAANCDILII 226 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~------~~~---~~l~e~l~~aDvV~l 226 (300)
+++|||||-|..|+.|+...+.+|++|.+.++++.... .. ..+ ..+.++++.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 47999999999999999999999999999998765432 10 112 257789999999976
No 236
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.05 E-value=0.0026 Score=58.51 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=65.5
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------C----Cccc---CCHHHHhhcCCEEEEecCCCh
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------S----YPFY---SNVCELAANCDILIICCGLTA 232 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~----~~~~---~~l~e~l~~aDvV~l~~p~~~ 232 (300)
+.|+++.|||.|.+|++++..|...|+ +|++++|+.++.. + .... .++.+.+.++|+||.++|...
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 568899999999999999999999998 7999999865321 0 0111 123355688999999999753
Q ss_pred hhhhcchHHHH---------hcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 233 ETHHMINKQVL---------SALGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 233 ~t~~li~~~~l---------~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
. ++...+ ..++++.+++|+--.+ .. ..|.++.++
T Consensus 203 ~----~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P-~~-T~ll~~A~~ 245 (282)
T TIGR01809 203 P----ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP-WP-TPLVAIVSA 245 (282)
T ss_pred C----CCHHHhhhhhhhhccccCCCCcEEEEEeeCC-CC-CHHHHHHHH
Confidence 2 222221 1234667788886544 23 334444444
No 237
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.05 E-value=0.0026 Score=58.93 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=43.5
Q ss_pred CEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC--c--ccCCHHHHhhcCCEEEEec
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SY--P--FYSNVCELAANCDILIICC 228 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~--~--~~~~l~e~l~~aDvV~l~~ 228 (300)
++|+|||.|.||..+|..+...|. +|..+|++.+... .. . ...+. +.+++||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 589999999999999999997765 8999998654321 00 0 11344 4589999999986
No 238
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.02 E-value=0.0029 Score=59.26 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=68.5
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----cccCCHHHHhhcCCEEEEec
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SY----PFYSNVCELAANCDILIICC 228 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~----~~~~~l~e~l~~aDvV~l~~ 228 (300)
+..++|+|||.|.||..+|..+...|. +|..+|.+++... +. ....+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 556899999999999999999988885 8989998765321 10 112355 5689999999976
Q ss_pred CCC----------------hhhhhcchHHH---HhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCceEEE
Q 022233 229 GLT----------------AETHHMINKQV---LSALGKEGVVINIGRGPIIDEQELVRCLV--QGEIKGAG 279 (300)
Q Consensus 229 p~~----------------~~t~~li~~~~---l~~mk~ga~lIn~srg~~vd~~aL~~aL~--~~~i~~a~ 279 (300)
-.. ..+..++ .++ +....|.+++|+++-..=+-...+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~-~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIM-DEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 221 1111112 122 23335677999998433333444444332 24666666
No 239
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.01 E-value=0.0076 Score=55.84 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=73.7
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC--CCCCCCcccCCHHHHhhcCCEEEEecCCChhh---hh------
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK--KPSVSYPFYSNVCELAANCDILIICCGLTAET---HH------ 236 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~--~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t---~~------ 236 (300)
.|++++|||-=.=-..++++|.+.|++|.++.-.. ....++....+.++++++||+|++-+|.+.+. +.
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 37899999999989999999999999987644322 22235555567788999999999998865332 11
Q ss_pred -cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 022233 237 -MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKG 277 (300)
Q Consensus 237 -li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~ 277 (300)
-++.+.++.|++|..++ ++.+..- +-+.+++++|..
T Consensus 81 ~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~ 117 (296)
T PRK08306 81 LVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKL 117 (296)
T ss_pred CcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeE
Confidence 13578899999998544 4444322 335566777753
No 240
>PLN02477 glutamate dehydrogenase
Probab=97.01 E-value=0.0052 Score=59.39 Aligned_cols=105 Identities=22% Similarity=0.357 Sum_probs=72.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCCC---C-CC----------------CCc--ccCCHHHH-hh
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKK---P-SV----------------SYP--FYSNVCEL-AA 219 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~~---~-~~----------------~~~--~~~~l~e~-l~ 219 (300)
|.++.|++|+|.|+|++|+.+|+.|...|.+|+ +.|.+.. + .. +.. ...+.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 456899999999999999999999999999998 4454310 0 00 000 01122332 35
Q ss_pred cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
.||+++-|. ..+.|+++....++ -.+++-.+-+++ .. +-.+.|+++.|.
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~ 329 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV 329 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence 789888774 45668888888775 457788888887 33 445888888875
No 241
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.98 E-value=0.00031 Score=61.89 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=81.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------------------CC-------------ccc
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------------------SY-------------PFY 211 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------------------~~-------------~~~ 211 (300)
...-+.|+|||.|.||+.+|+.....|++|+.+|++.+... .. ...
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 34457899999999999999999999999999998765310 00 112
Q ss_pred CCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233 212 SNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288 (300)
Q Consensus 212 ~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~ 288 (300)
.++.++++++|+|+=++--+-..+.-+-+++-...|+.+++. |+|. +...++..+++.... .+||-.|.+-|.
T Consensus 88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvPv 161 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVPV 161 (298)
T ss_pred CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCchh
Confidence 456778888888877765444443333344444456666643 5554 445667777776655 489999987773
No 242
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.97 E-value=0.0091 Score=58.50 Aligned_cols=110 Identities=23% Similarity=0.277 Sum_probs=78.5
Q ss_pred cCCCEEEEEec----ChhHHHHHHHHHhCCC--EEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 167 LGGKRVGIVGL----GSIGSLVAKRLDAFGC--SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 167 l~g~~vgIiG~----G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
++-++|+|||. |++|..+.+.++..|+ +|+..++......+...+.+++|+-...|++++++|.. .+..++.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l~- 82 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVVE- 82 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHH-HHHHHHH-
Confidence 56789999999 8899999999999887 68878877666567777889999988899999999943 3444443
Q ss_pred HHHhcCCCCcE-EEEcCCCcc-----cCHHHHHHHHHhCCceEEE
Q 022233 241 QVLSALGKEGV-VINIGRGPI-----IDEQELVRCLVQGEIKGAG 279 (300)
Q Consensus 241 ~~l~~mk~ga~-lIn~srg~~-----vd~~aL~~aL~~~~i~~a~ 279 (300)
+..+ ..-.++ ++.-+-++. ..+++|.++.++..+.-.|
T Consensus 83 e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 83 ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 3333 333344 443333332 3467888888888776443
No 243
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.94 E-value=0.0029 Score=61.30 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=45.6
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCC-----cccCCHHHHhhcCCEEEEecCCC
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSY-----PFYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~-----~~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
.++|.|||+|.+|.++|+.|+..|++|.++|++....... ......+....++|+|+.+.+..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 4689999999999999999999999999999765432110 11123334457899888876544
No 244
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.92 E-value=0.0027 Score=58.56 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=67.5
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCC---CCC-----------C--Cc--cc---CCHHHHhhcCCEE
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKK---PSV-----------S--YP--FY---SNVCELAANCDIL 224 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~---~~~-----------~--~~--~~---~~l~e~l~~aDvV 224 (300)
+.++++.|+|.|.+|++++..|...|++ |.+++|+.+ ... . .. .. .++++.++.+|+|
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil 203 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL 203 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence 5688999999999999999999999995 999998751 110 0 00 01 1234456778999
Q ss_pred EEecCCCh--hhhh-cc-hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 225 IICCGLTA--ETHH-MI-NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 225 ~l~~p~~~--~t~~-li-~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
+.++|..- .... .+ + ...++++.+++|+--.+. .+.-|..|-+.|
T Consensus 204 INaTp~Gm~~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G 252 (289)
T PRK12548 204 VNATLVGMKPNDGETNIKD---TSVFRKDLVVADTVYNPK-KTKLLEDAEAAG 252 (289)
T ss_pred EEeCCCCCCCCCCCCCCCc---HHhcCCCCEEEEecCCCC-CCHHHHHHHHCC
Confidence 99998642 1111 12 2 244677889999977663 444444444443
No 245
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.92 E-value=0.0066 Score=56.42 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=61.0
Q ss_pred CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCC-------------CC--cccCCHHHHhhcCCEEEEecCCCh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSV-------------SY--PFYSNVCELAANCDILIICCGLTA 232 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~-------------~~--~~~~~l~e~l~~aDvV~l~~p~~~ 232 (300)
++|+|||.|.+|+.+|..|...| .+|.++|++.+... +. .....-.+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 48999999999999999999888 47999998765421 00 011122345799999999986521
Q ss_pred ---hhh-hcc--h-------HHHHhcCCCCcEEEEcCCCcccCHHH
Q 022233 233 ---ETH-HMI--N-------KQVLSALGKEGVVINIGRGPIIDEQE 265 (300)
Q Consensus 233 ---~t~-~li--~-------~~~l~~mk~ga~lIn~srg~~vd~~a 265 (300)
.++ .++ | ...+....+.+++|+++ .++|.-+
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~~~ 124 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDVIT 124 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHHHH
Confidence 111 111 1 11233346788999987 5555444
No 246
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.00095 Score=59.38 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=48.9
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-------CC-------CcccCCHHHH-hhcCCEEEEecCCChh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-------VS-------YPFYSNVCEL-AANCDILIICCGLTAE 233 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------~~-------~~~~~~l~e~-l~~aDvV~l~~p~~~~ 233 (300)
|++.|+|+|..|..+|+.|...|++|+..++++... .. ......|+++ +.++|+++.++..+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 589999999999999999999999999988765431 11 1112346666 7899999999875543
No 247
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.91 E-value=0.00084 Score=55.28 Aligned_cols=105 Identities=21% Similarity=0.316 Sum_probs=70.5
Q ss_pred EEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCC--------------cccCCHHHHhhcCCEEEEecCCChh
Q 022233 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSY--------------PFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~--------------~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
|+|+|.|.||..+|.+|+..|.+|..+.|..... .+. ....+..+....+|+|++++...+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~- 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ- 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc-
Confidence 6899999999999999999999999988866100 010 001112356788999999987443
Q ss_pred hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233 234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279 (300)
Q Consensus 234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~ 279 (300)
++..+ ..+...+.+++.++-.--| +-.++.+.+.+...++.++.
T Consensus 80 ~~~~l-~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 80 LEQAL-QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp HHHHH-HHHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred hHHHH-HHHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 34444 3466667787777776555 45567777777566665443
No 248
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.87 E-value=0.0034 Score=59.23 Aligned_cols=78 Identities=24% Similarity=0.253 Sum_probs=56.1
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC--------------------------------CCC--c
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS--------------------------------VSY--P 209 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~--------------------------------~~~--~ 209 (300)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..-+. ... .
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 35999999999999999999999999998 788887653100 000 0
Q ss_pred ------ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233 210 ------FYSNVCELAANCDILIICCGLTAETHHMINKQVL 243 (300)
Q Consensus 210 ------~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l 243 (300)
...+++++++++|+|+.++ .+.+++.+++.-..
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~ 138 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQ 138 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHH
Confidence 0124567888899888887 56677766665443
No 249
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.84 E-value=0.0061 Score=59.46 Aligned_cols=106 Identities=17% Similarity=0.279 Sum_probs=70.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEE-CCCCC----C-----------------CCCCc-----ccCCHHH
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN-SRTKK----P-----------------SVSYP-----FYSNVCE 216 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~-~~~~~----~-----------------~~~~~-----~~~~l~e 216 (300)
+.++.|++|+|.|+|++|+.+|+.|..+|++|++. |.+.. . ...+. ...+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 44689999999999999999999999999999876 52110 0 00000 0112334
Q ss_pred Hh-hcCCEEEEecCCChhhhhcchHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 217 LA-ANCDILIICCGLTAETHHMINKQVLSALG--KEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 217 ~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
++ .+|||++-|.. .+.|+.+-...++ +-.+++-.+-+++ +.+-.+.|.++.|.
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE
Confidence 33 36999988864 4557766666663 2357777888887 44455778887775
No 250
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.84 E-value=0.0039 Score=55.48 Aligned_cols=88 Identities=26% Similarity=0.308 Sum_probs=60.0
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c--
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P-- 209 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~-- 209 (300)
..|.+++|.|+|+|.+|..+|+.|...|. +++.+|...-.. .+ . .
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 35899999999999999999999999998 677776432100 00 0 0
Q ss_pred --c--cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233 210 --F--YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 210 --~--~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~s 256 (300)
. ..++.+++.++|+|+.|+. +..++..+++...+. +.-+|+++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 0 1234567889999988875 566777776555442 34455554
No 251
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.80 E-value=0.0045 Score=57.49 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=70.6
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCC-----------cccCCHHHHhhcCCEEEEecCCCh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSY-----------PFYSNVCELAANCDILIICCGLTA 232 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~-----------~~~~~l~e~l~~aDvV~l~~p~~~ 232 (300)
++|+|+|.|.||..+|-.|...|.+|+.+.|..+. ..+. .......+.....|+|++++-..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 58999999999999999999999999988885321 1011 00011122346789999998543
Q ss_pred hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233 233 ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279 (300)
Q Consensus 233 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~ 279 (300)
++...+ +.+...+.+++.+|-.--| +-.++.+.+.+.+.++.++.
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~ 126 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFAS 126 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEE
Confidence 333333 4566677888887777444 34566677777666665443
No 252
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.78 E-value=0.011 Score=57.67 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=68.4
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC---CCCC---------------------------cccCC
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP---SVSY---------------------------PFYSN 213 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~---~~~~---------------------------~~~~~ 213 (300)
|.+|.|++|.|.|+|++|+..|+.|..+|++|++.+.+... ..+. ....+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 45799999999999999999999999999999874331110 0000 00112
Q ss_pred HHHHh-hcCCEEEEecCCChhhhhcchHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 214 VCELA-ANCDILIICCGLTAETHHMINKQVLSALGK-EG-VVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 214 l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk~-ga-~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
.++++ ..|||++-|. +++.|+.+....++. |. +++--+-| ++..++. +.|.++.|.
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~ 361 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL 361 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence 23332 4688887763 467788888887764 44 44555555 6666665 455555553
No 253
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=96.77 E-value=0.0021 Score=58.28 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=53.9
Q ss_pred HHHHHHhCC--CEEEEECCCCCCC-----CCCcc-cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEc
Q 022233 184 VAKRLDAFG--CSISYNSRTKKPS-----VSYPF-YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINI 255 (300)
Q Consensus 184 ~A~~l~~~g--~~V~~~~~~~~~~-----~~~~~-~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~ 255 (300)
+|+.|+..| .+|+++|+++... .+... ..+-.+.++++|+|++|+|.... ..+ -+++.+.+++|++++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~-~~~-l~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAI-EDV-LEEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHH-HHH-HHHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHH-HHH-HHHhhhhcCCCcEEEEe
Confidence 577888777 7999999886532 13221 12226789999999999996553 333 46677789999999999
Q ss_pred CCCcccCHHHHHHHHH
Q 022233 256 GRGPIIDEQELVRCLV 271 (300)
Q Consensus 256 srg~~vd~~aL~~aL~ 271 (300)
+.-.---.+++.+.+.
T Consensus 79 ~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLP 94 (258)
T ss_dssp -S-CHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhcC
Confidence 8877544555555554
No 254
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.77 E-value=0.0086 Score=57.91 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=62.7
Q ss_pred cCCCEEEEEec----------ChhHHHHHHHHHhCCCEEEEECCCCCCCC--CCcccCCHHHHhhcCCEEEEecCCChhh
Q 022233 167 LGGKRVGIVGL----------GSIGSLVAKRLDAFGCSISYNSRTKKPSV--SYPFYSNVCELAANCDILIICCGLTAET 234 (300)
Q Consensus 167 l~g~~vgIiG~----------G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~e~l~~aDvV~l~~p~~~~t 234 (300)
+.|++|+|+|+ ..-...+++.|...|.+|.+||+...... ......++++++++||+|+++..-.+-
T Consensus 311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~~- 389 (411)
T TIGR03026 311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDEF- 389 (411)
T ss_pred ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHHH-
Confidence 68999999998 55778999999999999999998754321 111246888999999999999874433
Q ss_pred hhcchHHHHhcCCCCcEEEEc
Q 022233 235 HHMINKQVLSALGKEGVVINI 255 (300)
Q Consensus 235 ~~li~~~~l~~mk~ga~lIn~ 255 (300)
+.+--+.....|+ ..+++|+
T Consensus 390 ~~~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 390 KDLDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred hccCHHHHHHhcC-CCEEEeC
Confidence 3222233344455 4588885
No 255
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.72 E-value=0.0027 Score=58.80 Aligned_cols=86 Identities=24% Similarity=0.353 Sum_probs=57.3
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcc-------cCCHHHHhhcCCEEEEecCCChhh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPF-------YSNVCELAANCDILIICCGLTAET 234 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~-------~~~l~e~l~~aDvV~l~~p~~~~t 234 (300)
.|+.+||+|+|-+|.--.+.+++||++|++.+++..+. .++.. .+-.+++...-|.++-+++.- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 79999999999999999999999999999999875321 13221 112334555567666666532 1
Q ss_pred hhcchHHHHhcCCCCcEEEEcC
Q 022233 235 HHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 235 ~~li~~~~l~~mk~ga~lIn~s 256 (300)
++-+ ...++.||++..+|-++
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLVG 279 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEEe
Confidence 2222 34566677776666554
No 256
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.71 E-value=0.01 Score=55.49 Aligned_cols=103 Identities=8% Similarity=0.103 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhCCCEEEEECCCCCCC-----------------------CC-------------CcccC--CHHHHhhcC
Q 022233 180 IGSLVAKRLDAFGCSISYNSRTKKPS-----------------------VS-------------YPFYS--NVCELAANC 221 (300)
Q Consensus 180 IG~~~A~~l~~~g~~V~~~~~~~~~~-----------------------~~-------------~~~~~--~l~e~l~~a 221 (300)
||..+|..+...|++|..+|++++.. .+ ..... ++.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 78999999999999999999887310 00 01111 256788999
Q ss_pred CEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 022233 222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN 285 (300)
Q Consensus 222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~ 285 (300)
|+|+-++|.+.+.+.-+-.++.+.++++++| +|.-+.+....|.+.++... +..++-.|.+
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~-r~~g~Hf~~P 141 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPE-RFLNAHWLNP 141 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcc-cEEEEecCCc
Confidence 9999999999999988888888889999998 44455567777887774321 1245554443
No 257
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.71 E-value=0.01 Score=49.77 Aligned_cols=96 Identities=11% Similarity=0.195 Sum_probs=69.0
Q ss_pred CCCEEEEEec--ChhHHHHHHHHHhCCCEEEEECCCCC--CC----------------CCCcccCCHHHHhhcCCEEEEe
Q 022233 168 GGKRVGIVGL--GSIGSLVAKRLDAFGCSISYNSRTKK--PS----------------VSYPFYSNVCELAANCDILIIC 227 (300)
Q Consensus 168 ~g~~vgIiG~--G~IG~~~A~~l~~~g~~V~~~~~~~~--~~----------------~~~~~~~~l~e~l~~aDvV~l~ 227 (300)
.|++|++||= +++.++++..+..||+++.+..+..- +. .......++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 3789999993 89999999999999999988877541 11 0123457999999999999876
Q ss_pred cCC----Chh-------hhhcchHHHHhcCCCCcEEEEcC---CCcccCH
Q 022233 228 CGL----TAE-------THHMINKQVLSALGKEGVVINIG---RGPIIDE 263 (300)
Q Consensus 228 ~p~----~~~-------t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~ 263 (300)
.-- .+. ..-.++++.++.+|++++|.-+. ||.=|+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~ 130 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSD 130 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEH
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCH
Confidence 544 111 11346889999999999999885 5644443
No 258
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.71 E-value=0.0027 Score=55.95 Aligned_cols=69 Identities=20% Similarity=0.150 Sum_probs=51.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------C---CcccCCHHHHhhcCCEEEEecCCChh
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------S---YPFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------~---~~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
.-+|.|++|.|||.|..|..=++.|...|.+|+++++...++. . .......++ +..+++|+.+++..+-
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~l 85 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEEL 85 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHHH
Confidence 5679999999999999999999999999999999988763211 1 011223333 4449999999875543
No 259
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.70 E-value=0.0082 Score=56.83 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=59.1
Q ss_pred CEEEEEec-ChhHHHHHHHHHhC-CCEEE-EECCCCCCC------CC---Cc---ccC--CHHHHhhcCCEEEEecCCCh
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAF-GCSIS-YNSRTKKPS------VS---YP---FYS--NVCELAANCDILIICCGLTA 232 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~------~~---~~---~~~--~l~e~l~~aDvV~l~~p~~~ 232 (300)
++|+|+|. |.+|+.+++.|..+ +.++. .++++.... .+ .. .+. +.++++.++|+|++|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 48999998 99999999999977 56776 434332111 01 00 112 45566678999999999553
Q ss_pred hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233 233 ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR 268 (300)
Q Consensus 233 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~ 268 (300)
..+ +. ... .+.|..+||.|..-=.+..++++
T Consensus 81 s~~-~~-~~~---~~~G~~VIDlS~~fR~~~~~~y~ 111 (346)
T TIGR01850 81 SAE-LA-PEL---LAAGVKVIDLSADFRLKDPEVYE 111 (346)
T ss_pred HHH-HH-HHH---HhCCCEEEeCChhhhcCChhhhH
Confidence 322 22 222 25789999998554455434333
No 260
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.70 E-value=0.004 Score=60.53 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=65.9
Q ss_pred CEEEEEecChhHHHHHH---HH---HhCCCEEEEECCCCCCCC-----------------CCcccCCHHHHhhcCCEEEE
Q 022233 170 KRVGIVGLGSIGSLVAK---RL---DAFGCSISYNSRTKKPSV-----------------SYPFYSNVCELAANCDILII 226 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~---~l---~~~g~~V~~~~~~~~~~~-----------------~~~~~~~l~e~l~~aDvV~l 226 (300)
.+|+|||.|.+|.+.+- .+ ...|.+|..||++++... ......++++++++||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998655 22 334679999998764211 11224578899999999999
Q ss_pred ecCCChh---hh--------h-------------c--------chHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 022233 227 CCGLTAE---TH--------H-------------M--------INKQVLSALG---KEGVVINIGRGPIIDEQELVRCLV 271 (300)
Q Consensus 227 ~~p~~~~---t~--------~-------------l--------i~~~~l~~mk---~ga~lIn~srg~~vd~~aL~~aL~ 271 (300)
++|.... .+ + + +-.++.+.++ |.++++|.+-..-+-..++.+...
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 9983110 00 0 0 1123333333 688999988777666667666543
No 261
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.68 E-value=0.0038 Score=48.78 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHhCCCEEEEECCCCCCCC--------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233 179 SIGSLVAKRLDAFGCSISYNSRTKKPSV--------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250 (300)
Q Consensus 179 ~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga 250 (300)
.-+..+++.|+..|++|.+||+.-.... +.....++++.++.+|+|+++++-.. -..+--..+...|+++.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELDWEEIAKLMRKPP 95 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCGHHHHHHHSCSSE
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccCHHHHHHhcCCCC
Confidence 4567899999999999999998754321 23345689999999999999987443 33333455667788999
Q ss_pred EEEEc
Q 022233 251 VVINI 255 (300)
Q Consensus 251 ~lIn~ 255 (300)
+|||+
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99998
No 262
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.68 E-value=0.0043 Score=59.53 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=64.7
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhC-CCEEEEECCCCCCCC-----C-------CcccCCHHH-HhhcCCEEEEecCCC
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAF-GCSISYNSRTKKPSV-----S-------YPFYSNVCE-LAANCDILIICCGLT 231 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~-g~~V~~~~~~~~~~~-----~-------~~~~~~l~e-~l~~aDvV~l~~p~~ 231 (300)
...++|+|+|. |.+|+.+.+.|... +++|..+.+...... . .....+++. .++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 45669999998 89999999999987 678876654322111 0 011122232 258899999999853
Q ss_pred hhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 022233 232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRC 269 (300)
Q Consensus 232 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~a 269 (300)
...++...|+.|..+||.|..--.+.++.++.
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~~ 147 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEYEE 147 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCcccchh
Confidence 23344455667899999997766666655543
No 263
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.67 E-value=0.0091 Score=55.12 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=68.7
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCC---CCC------C----C-cccCCH------HHHhhcCCEE
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKK---PSV------S----Y-PFYSNV------CELAANCDIL 224 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~---~~~------~----~-~~~~~l------~e~l~~aDvV 224 (300)
.+.|+++.|+|.|..+++++-.|...|. +|++++|+.. +.. . . ....++ .+.+.++|+|
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDiv 200 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL 200 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEE
Confidence 3678999999999999999999998897 7999999853 110 0 0 011222 3355679999
Q ss_pred EEecCCChh--hhh-cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233 225 IICCGLTAE--THH-MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI 275 (300)
Q Consensus 225 ~l~~p~~~~--t~~-li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i 275 (300)
+.++|..-. ... ++.. ...++++.++.|+--.+. . ..|+++.++..+
T Consensus 201 INaTp~Gm~~~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~-T~ll~~A~~~G~ 250 (288)
T PRK12749 201 TNGTKVGMKPLENESLVND--ISLLHPGLLVTECVYNPH-M-TKLLQQAQQAGC 250 (288)
T ss_pred EECCCCCCCCCCCCCCCCc--HHHCCCCCEEEEecCCCc-c-CHHHHHHHHCCC
Confidence 999996432 111 1111 234678889999976653 3 345555555443
No 264
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.65 E-value=0.013 Score=53.40 Aligned_cols=100 Identities=22% Similarity=0.226 Sum_probs=59.5
Q ss_pred CEEEEEe-cChhHHHHHHHHHh-CCCEEE-EECCCCCCC-------------CCCcccCCHHHHhhcCCEEEEecCCChh
Q 022233 170 KRVGIVG-LGSIGSLVAKRLDA-FGCSIS-YNSRTKKPS-------------VSYPFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 170 ~~vgIiG-~G~IG~~~A~~l~~-~g~~V~-~~~~~~~~~-------------~~~~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
.+|+|+| +|+||+.+++.+.. -++++. ++++..... .+...+.+++++...+|+|+.+.|...
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~- 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEG- 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHH-
Confidence 4899999 69999999999885 578875 467432211 123345678888667899999885322
Q ss_pred hhhcchHHHHhcCCCCc-EEEEcCCCccc-CHHHHHHHHHhCCc
Q 022233 234 THHMINKQVLSALGKEG-VVINIGRGPII-DEQELVRCLVQGEI 275 (300)
Q Consensus 234 t~~li~~~~l~~mk~ga-~lIn~srg~~v-d~~aL~~aL~~~~i 275 (300)
.. ......++.|. +++-+ .|--. +.+.|.++.++.++
T Consensus 81 ~~----~~~~~al~~g~~vVigt-tg~~~e~~~~l~~aA~~~g~ 119 (266)
T TIGR00036 81 VL----NHLKFALEHGVRLVVGT-TGFSEEDKQELADLAEKAGI 119 (266)
T ss_pred HH----HHHHHHHHCCCCEEEEC-CCCCHHHHHHHHHHHhcCCc
Confidence 22 22233344443 44444 35322 34445555555443
No 265
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=96.65 E-value=0.0085 Score=55.86 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=64.9
Q ss_pred cCCCEEEEEecChhHHHHHHHHHh-------CCCEEEEECCCCC--C------------CC------------CCcccCC
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDA-------FGCSISYNSRTKK--P------------SV------------SYPFYSN 213 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~-------~g~~V~~~~~~~~--~------------~~------------~~~~~~~ 213 (300)
-.-++|+|||.|+-|+++|+.+.. |..+|..|-+... . .. ......+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 335699999999999999998862 2335544422111 0 00 1123468
Q ss_pred HHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233 214 VCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP 259 (300)
Q Consensus 214 l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~ 259 (300)
+.+++.+||+++..+|.+---+ |.+++..+.|+++..|.+..|=
T Consensus 99 l~ea~~dADilvf~vPhQf~~~--ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQFIPR--ICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred HHHHhccCCEEEEeCChhhHHH--HHHHHhcccCCCCeEEEeecce
Confidence 9999999999999999654333 5578889999999999998773
No 266
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.64 E-value=0.011 Score=57.69 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=75.4
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---------CCCccc--CCHHHHhhcCCEEEEecCCChhhh
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---------VSYPFY--SNVCELAANCDILIICCGLTAETH 235 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~~~~~~--~~l~e~l~~aDvV~l~~p~~~~t~ 235 (300)
..+++|.|+|+|.-|.++|+.|+..|++|+++|.++.+. .+.... ....+.+.++|+|+.. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 449999999999999999999999999999999765541 111111 1122678889999986 3322222
Q ss_pred h-----------cch-HHHHhcC--CCCcEEEEcCCCcccCHHHHHHHHHh--------CCceEEEeeCCCCCC
Q 022233 236 H-----------MIN-KQVLSAL--GKEGVVINIGRGPIIDEQELVRCLVQ--------GEIKGAGLDVFENEP 287 (300)
Q Consensus 236 ~-----------li~-~~~l~~m--k~ga~lIn~srg~~vd~~aL~~aL~~--------~~i~~a~LDV~~~EP 287 (300)
. ++. -++|-.. ++..+-|-=+-|.---+.-+...|++ |+|...++|+.++++
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~ 157 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE 157 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence 2 221 1233332 22244444456665555555555543 677888899988743
No 267
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.64 E-value=0.0091 Score=58.15 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=71.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEE--------ECCCCCC--C---------------------C-CCccc
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY--------NSRTKKP--S---------------------V-SYPFY 211 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~--------~~~~~~~--~---------------------~-~~~~~ 211 (300)
|.+|.|+||.|=|+|++|+..|+.|..+|++|+. |++..-. . . +...
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~- 301 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTF- 301 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEE-
Confidence 4568999999999999999999999999999987 5532111 0 0 1111
Q ss_pred CCHHHHh-hcCCEEEEecCCChhhhhcchHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 212 SNVCELA-ANCDILIICCGLTAETHHMINKQVLSALG--KEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 212 ~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
.+.++++ ..||+++-|. +++.|+.+....+. +-.+++--+-+ ++..+|- +.|+++.|.
T Consensus 302 i~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~ 362 (445)
T PRK14030 302 FAGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL 362 (445)
T ss_pred cCCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence 1223333 4588887763 56778887777772 23467777777 5665544 777777774
No 268
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.63 E-value=0.0044 Score=57.93 Aligned_cols=96 Identities=23% Similarity=0.339 Sum_probs=60.7
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCCC-------C-------cccCCHHHHhhcCCEEEEecCCC
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSVS-------Y-------PFYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~~-------~-------~~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
.+++|+|||.|.+|..+|-.+...|. ++..+|++.....+ . ....+..+.+++||+|+++.-..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 46799999999999999999998887 79999986653210 0 11112335689999999976431
Q ss_pred --h-hhh-hcc--h----HHHHh---cCCCCcEEEEcCCCcccCHHH
Q 022233 232 --A-ETH-HMI--N----KQVLS---ALGKEGVVINIGRGPIIDEQE 265 (300)
Q Consensus 232 --~-~t~-~li--~----~~~l~---~mk~ga~lIn~srg~~vd~~a 265 (300)
+ .++ .++ | ++... .-.+.+++|+++ .++|.-.
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs--NP~d~~~ 129 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS--NPVDILT 129 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc--CcHHHHH
Confidence 1 122 111 1 12222 234688999987 4444433
No 269
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.63 E-value=0.007 Score=54.54 Aligned_cols=80 Identities=24% Similarity=0.376 Sum_probs=55.3
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c--
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P-- 209 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~-- 209 (300)
..|.+++|+|||+|.+|..+|+.|...|. ++.++|...-.. .+ . .
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 46999999999999999999999999997 677776432110 00 0 0
Q ss_pred --c--cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233 210 --F--YSNVCELAANCDILIICCGLTAETHHMINKQVLSA 245 (300)
Q Consensus 210 --~--~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~ 245 (300)
. ..+..++++++|+|+.++ .+.+++..+++...+.
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~ 146 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAA 146 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHh
Confidence 0 112456788999888886 4666777776555443
No 270
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.61 E-value=0.0085 Score=53.82 Aligned_cols=80 Identities=26% Similarity=0.386 Sum_probs=56.0
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c--
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P-- 209 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~-- 209 (300)
..|.+++|.|+|+|.+|..+|+.|...|. +++.+|...-.. .+ . .
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 35899999999999999999999999997 677776542210 00 0 0
Q ss_pred --c--cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233 210 --F--YSNVCELAANCDILIICCGLTAETHHMINKQVLSA 245 (300)
Q Consensus 210 --~--~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~ 245 (300)
. ..++.+++.++|+|+.++ .+.+++..+++...+.
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~ 138 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFAA 138 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHHc
Confidence 0 023556788899888876 4667777776655443
No 271
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.60 E-value=0.0078 Score=56.20 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=65.6
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC----------CC----c-c-cCCHHHHhhcCCEEEEecCC
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV----------SY----P-F-YSNVCELAANCDILIICCGL 230 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~----------~~----~-~-~~~l~e~l~~aDvV~l~~p~ 230 (300)
..+|+|||.|.+|.++|-.|...|. ++..+|.+.+... .+ . . ..+.++ +++||+|+++.-.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 3599999999999999999987665 6888988764321 00 1 1 134554 8999999996542
Q ss_pred C--h-hhh-hcc--hH-------HHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHhCCceEE
Q 022233 231 T--A-ETH-HMI--NK-------QVLSALGKEGVVINIGRGPIIDEQE--LVRC--LVQGEIKGA 278 (300)
Q Consensus 231 ~--~-~t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~~a--L~~a--L~~~~i~~a 278 (300)
. + .++ .++ |. +.+....+.+++|+++ .++|.-+ +.+. +...++.|.
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEec
Confidence 1 1 233 111 11 1233346789999998 4455433 2232 334565555
No 272
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.59 E-value=0.0045 Score=60.21 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=48.2
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCC-------cccCCHHHH-hhcCCEEEEecCCChh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSY-------PFYSNVCEL-AANCDILIICCGLTAE 233 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~-------~~~~~l~e~-l~~aDvV~l~~p~~~~ 233 (300)
|+|.|+|+|.+|+.+|+.|...|++|.+.+++++.. .+. .....++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 579999999999999999999999999998865421 111 112345555 7889999999886544
No 273
>PRK11579 putative oxidoreductase; Provisional
Probab=96.58 E-value=0.016 Score=54.56 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=46.1
Q ss_pred CEEEEEecChhHHH-HHHHHHhC-CCEEE-EECCCCCCC----CCCcccCCHHHHhh--cCCEEEEecCCChh
Q 022233 170 KRVGIVGLGSIGSL-VAKRLDAF-GCSIS-YNSRTKKPS----VSYPFYSNVCELAA--NCDILIICCGLTAE 233 (300)
Q Consensus 170 ~~vgIiG~G~IG~~-~A~~l~~~-g~~V~-~~~~~~~~~----~~~~~~~~l~e~l~--~aDvV~l~~p~~~~ 233 (300)
.+|||||+|.||+. .+..++.. ++++. +++++.+.. .....+.+++++++ +-|+|++++|....
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 48999999999985 56666543 67875 577764321 12345689999996 47999999997544
No 274
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.56 E-value=0.0089 Score=56.52 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=57.3
Q ss_pred CEEEEEec-ChhHHHHHHHHHhC-CCEEEE-ECCCCCCC-C----C-Cc-----ccCCHHH-HhhcCCEEEEecCCChhh
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAF-GCSISY-NSRTKKPS-V----S-YP-----FYSNVCE-LAANCDILIICCGLTAET 234 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~-g~~V~~-~~~~~~~~-~----~-~~-----~~~~l~e-~l~~aDvV~l~~p~~~~t 234 (300)
++|+|+|. |.+|+.+++.|... ++++.. .++..... . + .. .+.++++ ...++|+|++|+|.....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~ 82 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM 82 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence 58999997 99999999999976 567654 55332211 0 0 11 1223332 457899999999965432
Q ss_pred hhcchHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 022233 235 HHMINKQVLSALGKEGVVINIGRGPIIDEQEL 266 (300)
Q Consensus 235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL 266 (300)
+ ++ . ..++.|..+||.|-.=-.+..++
T Consensus 83 ~-~v-~---~a~~aG~~VID~S~~fR~~~~~~ 109 (343)
T PRK00436 83 D-LA-P---QLLEAGVKVIDLSADFRLKDPEV 109 (343)
T ss_pred H-HH-H---HHHhCCCEEEECCcccCCCCchh
Confidence 2 21 2 22357899999985544544333
No 275
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.55 E-value=0.015 Score=57.09 Aligned_cols=108 Identities=11% Similarity=0.126 Sum_probs=68.6
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------CCCccc--CCHHHHhhcCCEEEEecCCChh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------VSYPFY--SNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~~~~~--~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
-+.+++|+|+|+|..|.++|+.|+..|++|.++|...... .+.... ....+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 3678999999999999999999999999999999764321 122111 1224556889999887 53322
Q ss_pred hhh-----------cchH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233 234 THH-----------MINK-QVL-SALGKEGVVINIGRGPIIDEQELVRCLVQGE 274 (300)
Q Consensus 234 t~~-----------li~~-~~l-~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~ 274 (300)
+.. ++++ +.+ ...+...+-|-=+.|..--.+-|...|+...
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 221 2221 122 2223234555556788777777777776543
No 276
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=96.52 E-value=0.012 Score=52.96 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=65.6
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCCCC----------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233 181 GSLVAKRLDAFGCSISYNSRTKKPSV----------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250 (300)
Q Consensus 181 G~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga 250 (300)
|..||-.++..|++|...+++.+-.. +.....+=.++.+++.+.++-.|....|-++. +++++.++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 67899999999999999988765321 44445566688999999999999998877654 78999999999
Q ss_pred EEEEcCCCccc
Q 022233 251 VVINIGRGPII 261 (300)
Q Consensus 251 ~lIn~srg~~v 261 (300)
++.|+.+-+.+
T Consensus 112 VicnTCT~sp~ 122 (340)
T COG4007 112 VICNTCTVSPV 122 (340)
T ss_pred EecccccCchh
Confidence 99999987765
No 277
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.52 E-value=0.0049 Score=55.74 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=64.6
Q ss_pred ccccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCC-----------CCCCcccCCHHHHhhcCCEEEEecCCC
Q 022233 164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKP-----------SVSYPFYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~-----------~~~~~~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
|.+|+..+++|+|+ |.||..+|+.|.+.+......-|.... ..+.....+++..+.+.|+++-.....
T Consensus 162 GidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~ 241 (351)
T COG5322 162 GIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMP 241 (351)
T ss_pred CcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeecC
Confidence 88999999999997 999999999999888765444322110 112233456665555555444433222
Q ss_pred hhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHH
Q 022233 232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQE 265 (300)
Q Consensus 232 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~a 265 (300)
+ -..|+.+. +|||+++||-++..=||+.-
T Consensus 242 ~--g~~I~pq~---lkpg~~ivD~g~P~dvd~~v 270 (351)
T COG5322 242 K--GVEIFPQH---LKPGCLIVDGGYPKDVDTSV 270 (351)
T ss_pred C--Cceechhh---ccCCeEEEcCCcCccccccc
Confidence 2 23465544 78999999999998887753
No 278
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.52 E-value=0.014 Score=52.72 Aligned_cols=34 Identities=18% Similarity=0.493 Sum_probs=30.8
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
.++-|+|.|.+++++|+.++.+|++|+++|.+++
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 3899999999999999999999999999886644
No 279
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.52 E-value=0.015 Score=51.30 Aligned_cols=80 Identities=30% Similarity=0.393 Sum_probs=54.9
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC------------CC-----------------Cc-----
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS------------VS-----------------YP----- 209 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~------------~~-----------------~~----- 209 (300)
..|.+++|+|||+|.+|..+|+.|...|. ++..+|...-.. .+ ..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~ 103 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN 103 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 35899999999999999999999999998 588777652100 00 00
Q ss_pred ---ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233 210 ---FYSNVCELAANCDILIICCGLTAETHHMINKQVLSA 245 (300)
Q Consensus 210 ---~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~ 245 (300)
...+++++++++|+|+.++ .+.+++..++....+.
T Consensus 104 ~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 104 EKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEH 141 (212)
T ss_pred eecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHh
Confidence 0113446788999988885 4556666666554443
No 280
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.51 E-value=0.011 Score=55.93 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=42.9
Q ss_pred CEEEEEecChhHHHHHHHHHhC-CCEEEE-ECCCCCCC------------------------CCCcccCCHHHHhhcCCE
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAF-GCSISY-NSRTKKPS------------------------VSYPFYSNVCELAANCDI 223 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~~-~~~~~~~~------------------------~~~~~~~~l~e~l~~aDv 223 (300)
.+|||+|+|+||+.+++.+... ++++.+ .++.++.. .+.....++++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 3899999999999999988754 577764 44332100 011122467788889999
Q ss_pred EEEecCCC
Q 022233 224 LIICCGLT 231 (300)
Q Consensus 224 V~l~~p~~ 231 (300)
|+.+.|..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99998754
No 281
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.47 E-value=0.0061 Score=56.40 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=42.0
Q ss_pred EEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----cccCCHHHHhhcCCEEEEecC
Q 022233 172 VGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SY----PFYSNVCELAANCDILIICCG 229 (300)
Q Consensus 172 vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~----~~~~~l~e~l~~aDvV~l~~p 229 (300)
|+|||.|.||..+|..+...|. +|..+|++++... .. ....+. +.+++||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999987665 9999998754311 00 111344 45899999999773
No 282
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.46 E-value=0.0049 Score=57.38 Aligned_cols=61 Identities=25% Similarity=0.307 Sum_probs=46.0
Q ss_pred CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCCC-------Cc--------ccCCHHHHhhcCCEEEEecCCC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSVS-------YP--------FYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~~-------~~--------~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
++|+|||.|.+|..+|..|...| .+|..+|++.....+ .. ...+. +.+++||+|+++.+..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 47999999999999999999888 479999987643211 10 11233 5689999999999863
No 283
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.44 E-value=0.0033 Score=49.31 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=52.2
Q ss_pred EEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc-------ccCCHHH-HhhcCCEEEEecCCChhhhhcc
Q 022233 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP-------FYSNVCE-LAANCDILIICCGLTAETHHMI 238 (300)
Q Consensus 172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~-------~~~~l~e-~l~~aDvV~l~~p~~~~t~~li 238 (300)
|.|+|+|.+|+.+++.|+..+.+|.+.+++++.. .+.. ....+++ -++++|.|+++.+....+. .
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~--~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENL--L 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHH--H
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHH--H
Confidence 5799999999999999999777999988876431 1211 1123443 3688999999988554433 3
Q ss_pred hHHHHhcCCCCcEEE
Q 022233 239 NKQVLSALGKEGVVI 253 (300)
Q Consensus 239 ~~~~l~~mk~ga~lI 253 (300)
-...+..+-+...+|
T Consensus 79 ~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 79 IALLARELNPDIRII 93 (116)
T ss_dssp HHHHHHHHTTTSEEE
T ss_pred HHHHHHHHCCCCeEE
Confidence 334455555555554
No 284
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.43 E-value=0.021 Score=51.42 Aligned_cols=105 Identities=26% Similarity=0.383 Sum_probs=68.3
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEE--------CCCCCC---------CCC--Cccc----------CCHH
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN--------SRTKKP---------SVS--YPFY----------SNVC 215 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~--------~~~~~~---------~~~--~~~~----------~~l~ 215 (300)
.++.|+++.|-|+|++|+.+|+.|...|++|... ++..-. ..+ ...+ .+-+
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 107 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND 107 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence 3588999999999999999999999999988655 221100 001 1111 1222
Q ss_pred -HHh-hcCCEEEEecCCChhhhhcchHHHHh-cCCCCcE-EEEcCCCcccCHHHHHHHHHhCCce
Q 022233 216 -ELA-ANCDILIICCGLTAETHHMINKQVLS-ALGKEGV-VINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 216 -e~l-~~aDvV~l~~p~~~~t~~li~~~~l~-~mk~ga~-lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
+++ ..||+++-|. ..+.|+.+... .++.++- ++--+-+++ ..++.. .|+++.|.
T Consensus 108 ~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 108 DEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGIL 165 (244)
T ss_dssp CHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-E
T ss_pred cccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCE
Confidence 455 6899999983 34557777777 7765654 555556665 555555 88888874
No 285
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.42 E-value=0.0062 Score=49.90 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=49.4
Q ss_pred EEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcE
Q 022233 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV 251 (300)
Q Consensus 172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~ 251 (300)
+-|+|.|.+++++++.++.+|++|+++|++++. +..++-+. +.+. ++.. +.+ .+.++..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~~-~~~~-~~~~-----~~~-~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEVI-CIPP-DDIL-----EDL-EIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH-HHHH-----HHC--S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCccE-ecCh-HHHH-----hcc-CCCCCeE
Confidence 469999999999999999999999998876431 12344322 2221 1110 111 3556666
Q ss_pred EEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233 252 VINIGRGPIIDEQELVRCLVQGEIKGAG 279 (300)
Q Consensus 252 lIn~srg~~vd~~aL~~aL~~~~i~~a~ 279 (300)
+| +.++.-.|.+.|.++|++ .....|
T Consensus 60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG 85 (136)
T PF13478_consen 60 VV-MTHDHELDAEALEAALAS-PARYIG 85 (136)
T ss_dssp EE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred EE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence 65 788888888888888876 344444
No 286
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.41 E-value=0.026 Score=54.99 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=67.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCCC----------CC--------------C-------CCccc
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKK----------PS--------------V-------SYPFY 211 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~~----------~~--------------~-------~~~~~ 211 (300)
+.+|.|+||.|=|+|++|+..|+.|..+|.+|+ +.|.+.. .. . ++..
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~- 310 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY- 310 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE-
Confidence 456899999999999999999999999999988 5554410 00 0 0011
Q ss_pred CCHHHHh-hcCCEEEEecCCChhhhhcchHHHHhcC-CCCcEE-EEcCCCcccCHHHHHHHHHhCCce
Q 022233 212 SNVCELA-ANCDILIICCGLTAETHHMINKQVLSAL-GKEGVV-INIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 212 ~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~m-k~ga~l-In~srg~~vd~~aL~~aL~~~~i~ 276 (300)
.+.++++ ..||+.+-|. +.+.|+.+..+.+ +.++.+ +--+-+++ ..+ -.+.|++++|.
T Consensus 311 ~~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~ 371 (454)
T PTZ00079 311 VPGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVI 371 (454)
T ss_pred eCCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcE
Confidence 1122222 4688877763 5667887776655 445554 45555554 444 44677777764
No 287
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.39 E-value=0.008 Score=55.30 Aligned_cols=104 Identities=24% Similarity=0.297 Sum_probs=73.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------C----CcccCCHHHH--hhcCCEEEEecCCCh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------S----YPFYSNVCEL--AANCDILIICCGLTA 232 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~----~~~~~~l~e~--l~~aDvV~l~~p~~~ 232 (300)
...|+++.|+|.|-.+++++..|+..|. +|++++|+.+... + ......+.++ ..++|+||.++|..-
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm 202 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM 202 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence 4679999999999999999999999996 7999999875421 1 0011222222 226999999999764
Q ss_pred hhh---hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 233 ETH---HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 233 ~t~---~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
.-. .+++ ...++++.++.|+--.+. ++.-|..|=+.|
T Consensus 203 ~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283)
T COG0169 203 AGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283)
T ss_pred CCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence 432 2344 566889999999987775 555555554445
No 288
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.39 E-value=0.0082 Score=57.28 Aligned_cols=58 Identities=24% Similarity=0.445 Sum_probs=44.2
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----C------CcccCCHHHHhhcCCEEEE
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----S------YPFYSNVCELAANCDILII 226 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~------~~~~~~l~e~l~~aDvV~l 226 (300)
.++|||||.|..|+.++..++.+|++|.++++++.... . ....+.+.++++.+|+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 37899999999999999999999999999988654321 0 1111246678889998864
No 289
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.39 E-value=0.045 Score=48.93 Aligned_cols=121 Identities=22% Similarity=0.249 Sum_probs=73.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C-----c
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y-----P 209 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~-----~ 209 (300)
.|.+++|.|+|+|.+|..+|+.|...|. +++.+|...-.. .+ . .
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 5889999999999999999999999998 777776432100 00 0 0
Q ss_pred -c--cCCHHHHh-hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccC-----------------HHHHHH
Q 022233 210 -F--YSNVCELA-ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIID-----------------EQELVR 268 (300)
Q Consensus 210 -~--~~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd-----------------~~aL~~ 268 (300)
. ..+.++++ .+.|+|+.++-.. ..+-.+++..... .=.++...+-|.-.| ...+-.
T Consensus 88 ~~i~~~~~~~l~~~~~D~VvdaiD~~-~~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~ 164 (231)
T cd00755 88 EFLTPDNSEDLLGGDPDFVVDAIDSI-RAKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRK 164 (231)
T ss_pred eecCHhHHHHHhcCCCCEEEEcCCCH-HHHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHH
Confidence 0 12345565 3689999987533 3333333332221 123444455554433 345667
Q ss_pred HHHhCCceEEEeeCCCCCCCC
Q 022233 269 CLVQGEIKGAGLDVFENEPDV 289 (300)
Q Consensus 269 aL~~~~i~~a~LDV~~~EP~~ 289 (300)
.|++.++..-.-=||..|++.
T Consensus 165 ~Lrk~~~~~~~~~v~S~E~~~ 185 (231)
T cd00755 165 RLRKRGIFFGVPVVYSTEPPD 185 (231)
T ss_pred HHHHcCCCCCeEEEeCCCCCC
Confidence 788888852233478888653
No 290
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.37 E-value=0.024 Score=55.93 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=70.0
Q ss_pred ccCCCEEEEEec----------ChhHHHHHHHHHhCCCEEEEECCCCCCCC---------------------------CC
Q 022233 166 KLGGKRVGIVGL----------GSIGSLVAKRLDAFGCSISYNSRTKKPSV---------------------------SY 208 (300)
Q Consensus 166 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------------------------~~ 208 (300)
.+.|++|+|+|+ ..-...+++.|...|.+|.+||+.-.... ..
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 478999999998 56788999999999999999998633210 01
Q ss_pred cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233 209 PFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELV 267 (300)
Q Consensus 209 ~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~ 267 (300)
....++.+++++||+|+++..-.+ -+.+--+.....|++..+++|. |+- .|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~l~~~~~~~~m~~~~~viD~-rn~-l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDE-FKTLDYQKIYDNMQKPAFVFDG-RNV-LDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChH-hcccCHHHHHHhccCCCEEEEC-CCC-CCHHHHH
Confidence 223456789999999999987443 3333234445668766689995 554 4655553
No 291
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.35 E-value=0.0062 Score=59.85 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=59.2
Q ss_pred ccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------C-C---cccCCHHHHhhcCCEEEEecC
Q 022233 160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------S-Y---PFYSNVCELAANCDILIICCG 229 (300)
Q Consensus 160 ~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~-~---~~~~~l~e~l~~aDvV~l~~p 229 (300)
|+ -.+|+|++|.|||.|.++..=++.|..+|.+|+++.+.-.+.. + . .... .++.++.+++|+.++.
T Consensus 5 P~--~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~-~~~dl~~~~lv~~at~ 81 (457)
T PRK10637 5 PI--FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPF-DESLLDTCWLAIAATD 81 (457)
T ss_pred ce--EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-ChHHhCCCEEEEECCC
Confidence 55 5689999999999999999999999999999999876543221 1 0 0111 2355788998888865
Q ss_pred CChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233 230 LTAETHHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 230 ~~~~t~~li~~~~l~~mk~ga~lIn~s 256 (300)
..+ +|+.+....+...+++|++
T Consensus 82 d~~-----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 82 DDA-----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred CHH-----HhHHHHHHHHHcCcEEEEC
Confidence 433 3444444444444555543
No 292
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.34 E-value=0.067 Score=50.44 Aligned_cols=91 Identities=8% Similarity=0.062 Sum_probs=64.1
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCC-CC-------------CC--CcccCCHHHHhhcCCEEEEe
Q 022233 166 KLGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKK-PS-------------VS--YPFYSNVCELAANCDILIIC 227 (300)
Q Consensus 166 ~l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~-~~-------------~~--~~~~~~l~e~l~~aDvV~l~ 227 (300)
.+.|++|++||-+ ++.++++..+..+|++|.+..+..- +. .+ +....++++++++||+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4779999999986 6788899999999999988776421 11 12 22357899999999999873
Q ss_pred c----CCCh---hh------hhcchHHHHhcC-CCCcEEEEcC
Q 022233 228 C----GLTA---ET------HHMINKQVLSAL-GKEGVVINIG 256 (300)
Q Consensus 228 ~----p~~~---~t------~~li~~~~l~~m-k~ga~lIn~s 256 (300)
. .... .. .-.++++.++.. |++++|.-+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 1100 11 113577888876 7888888764
No 293
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.32 E-value=0.032 Score=51.95 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=70.3
Q ss_pred cCCCEEEEEec---ChhHHHHHHHHHhCCCEEEEECCCCCCCC---CCcccCCHHHHhhcCCEEEEecCC--------Ch
Q 022233 167 LGGKRVGIVGL---GSIGSLVAKRLDAFGCSISYNSRTKKPSV---SYPFYSNVCELAANCDILIICCGL--------TA 232 (300)
Q Consensus 167 l~g~~vgIiG~---G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---~~~~~~~l~e~l~~aDvV~l~~p~--------~~ 232 (300)
+.|++|+++|- +++..+++..+..+|+++.+..+..-... ......++++++++||+|....=- .+
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~ 233 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLP 233 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECCcccccccccchH
Confidence 67899999998 58999999999999999988776432211 123467899999999999875310 01
Q ss_pred hh-----hhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233 233 ET-----HHMINKQVLSALGKEGVVINIG---RGPIIDEQ 264 (300)
Q Consensus 233 ~t-----~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~ 264 (300)
.- .-.++++.++.++++++|.-+- ||.=|+.+
T Consensus 234 ~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~ 273 (305)
T PRK00856 234 SYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASD 273 (305)
T ss_pred HHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHH
Confidence 11 1245788888889998888774 66545443
No 294
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.31 E-value=0.014 Score=54.44 Aligned_cols=104 Identities=22% Similarity=0.317 Sum_probs=68.8
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC-C-----C------CC----CcccCCHHHHhhcCCEEEEecCCChh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK-P-----S------VS----YPFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~-~-----~------~~----~~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
++|.|+|.|.||..++-+|...|..|+.+.|.+. . . .+ ........+.+..+|+|++++-..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q- 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ- 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc-
Confidence 5899999999999999999999988888777653 1 0 01 0112233456679999999986443
Q ss_pred hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
+... -+.+.+.+++.++++-+--| +=.++.+.....+.++.
T Consensus 80 ~~~a-l~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il 120 (307)
T COG1893 80 LEEA-LPSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL 120 (307)
T ss_pred HHHH-HHHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE
Confidence 3333 35677778888776655333 33444666666555453
No 295
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.31 E-value=0.017 Score=44.23 Aligned_cols=70 Identities=24% Similarity=0.245 Sum_probs=46.7
Q ss_pred CCEEEEEecChhHHHHHHHHH-hCCCEE-EEECCCCCCC----CCCcccCCHHHHhhc--CCEEEEecCCChhhhhcch
Q 022233 169 GKRVGIVGLGSIGSLVAKRLD-AFGCSI-SYNSRTKKPS----VSYPFYSNVCELAAN--CDILIICCGLTAETHHMIN 239 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~-~~g~~V-~~~~~~~~~~----~~~~~~~~l~e~l~~--aDvV~l~~p~~~~t~~li~ 239 (300)
..++.|+|+|+.|++++.... ..|+.+ .++|.++... .+...+.+++++.+. .|+-++++|... .+..+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~-a~~~~~ 80 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEA-AQEVAD 80 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHH-HHHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHH-HHHHHH
Confidence 348999999999999985444 567654 4666655432 134445578887776 999999998543 343333
No 296
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.30 E-value=0.023 Score=53.73 Aligned_cols=107 Identities=16% Similarity=0.230 Sum_probs=65.0
Q ss_pred CEEEEEecChhHHHHHHHHHhC----------CCEEE-EECCCCC-------CC---------CC-Cc------ccCCHH
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAF----------GCSIS-YNSRTKK-------PS---------VS-YP------FYSNVC 215 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~----------g~~V~-~~~~~~~-------~~---------~~-~~------~~~~l~ 215 (300)
.+|||+|+|.||+.+++.+... +.+|. +.|++.. .. .+ .. ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3899999999999999998754 45654 4454211 00 00 01 123788
Q ss_pred HHhh--cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCce
Q 022233 216 ELAA--NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI-IDEQELVRCLVQGEIK 276 (300)
Q Consensus 216 e~l~--~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~aL~~~~i~ 276 (300)
+++. +.|+|+.++|....+...--.-....++.|.-+|-...+.+ ...++|.++.++.++.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 8874 67999999996554321111223455666766665444443 2456777777776553
No 297
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.29 E-value=0.0041 Score=59.43 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=58.3
Q ss_pred EEEEecChhHHHHHHHHHhCC-C-EEEEECCCCCCC-------C--C-------CcccCCHHHHhhcCCEEEEecCCChh
Q 022233 172 VGIVGLGSIGSLVAKRLDAFG-C-SISYNSRTKKPS-------V--S-------YPFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 172 vgIiG~G~IG~~~A~~l~~~g-~-~V~~~~~~~~~~-------~--~-------~~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
|+|+|.|.+|+.+++.|...+ . +|++.+|+.+.. . . .....++.++++++|+|+.|+|.. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 789999999999999999766 4 899998876531 1 1 111234778999999999999754 1
Q ss_pred hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233 234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI 275 (300)
Q Consensus 234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i 275 (300)
...+ ....++.|.-.||++- -.-...+|.+..++.++
T Consensus 80 ~~~v----~~~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~ 116 (386)
T PF03435_consen 80 GEPV----ARACIEAGVHYVDTSY-VTEEMLALDEEAKEAGV 116 (386)
T ss_dssp HHHH----HHHHHHHT-EEEESS--HHHHHHHCHHHHHHTTS
T ss_pred hHHH----HHHHHHhCCCeeccch-hHHHHHHHHHHHHhhCC
Confidence 1111 2233456778888433 11233344444444444
No 298
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.28 E-value=0.002 Score=53.05 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=58.9
Q ss_pred CEEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCCCCCC---------------CCcccCCHHHHhhcCCEEEEecCC-
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTKKPSV---------------SYPFYSNVCELAANCDILIICCGL- 230 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~---------------~~~~~~~l~e~l~~aDvV~l~~p~- 230 (300)
++|+|||. |.+|+.+|-.|...+. ++..+|+...... .........+.+++||+|+++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 48999999 9999999999986664 7999998753211 011223567889999999998733
Q ss_pred -Ch-hhh-hcc--hHH-------HHhcCCCCcEEEEcCCCcccCHH
Q 022233 231 -TA-ETH-HMI--NKQ-------VLSALGKEGVVINIGRGPIIDEQ 264 (300)
Q Consensus 231 -~~-~t~-~li--~~~-------~l~~mk~ga~lIn~srg~~vd~~ 264 (300)
.+ +++ .++ |.+ .+....+.++++.++ .++|.-
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd~~ 124 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVDVM 124 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHHHH
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHHHH
Confidence 22 112 111 111 223335778888883 446633
No 299
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.25 E-value=0.1 Score=54.16 Aligned_cols=138 Identities=13% Similarity=0.182 Sum_probs=96.5
Q ss_pred CeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHH
Q 022233 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKR 187 (300)
Q Consensus 108 gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~ 187 (300)
+|+|.|.. . ..+|=.+++-+++.+|-. |..+...+|.|.|.|.-|-.+|+.
T Consensus 153 ~ip~f~DD-~--~GTa~v~lA~l~na~~~~--------------------------~~~~~~~~iv~~GaGaag~~~a~~ 203 (752)
T PRK07232 153 DIPVFHDD-Q--HGTAIISAAALLNALELV--------------------------GKKIEDVKIVVSGAGAAAIACLNL 203 (752)
T ss_pred CCCeeccc-c--chHHHHHHHHHHHHHHHh--------------------------CCChhhcEEEEECccHHHHHHHHH
Confidence 57777763 2 244556666666665531 456788999999999999999999
Q ss_pred HHhCCC---EEEEECCCCC----C-C--C-------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233 188 LDAFGC---SISYNSRTKK----P-S--V-------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250 (300)
Q Consensus 188 l~~~g~---~V~~~~~~~~----~-~--~-------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga 250 (300)
|...|. +++.+|+..- . . . ......+|.|+++.+|+++=. . +.++++++.++.|.+.+
T Consensus 204 l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~p 278 (752)
T PRK07232 204 LVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNP 278 (752)
T ss_pred HHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCC
Confidence 999998 6888876421 1 0 0 001235899999999977754 2 14789999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233 251 VVINIGRGPIIDEQELVRCLVQGEIKGAG 279 (300)
Q Consensus 251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~ 279 (300)
++.=.|.....-..+.......+.|.+.|
T Consensus 279 iifalsNP~~E~~p~~a~~~~~~~i~atG 307 (752)
T PRK07232 279 IIFALANPDPEITPEEAKAVRPDAIIATG 307 (752)
T ss_pred EEEecCCCCccCCHHHHHHhcCCEEEEEC
Confidence 99999988864233333333334566665
No 300
>PRK08223 hypothetical protein; Validated
Probab=96.22 E-value=0.024 Score=52.21 Aligned_cols=37 Identities=27% Similarity=0.484 Sum_probs=32.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT 201 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~ 201 (300)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 45999999999999999999999999998 67776643
No 301
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.21 E-value=0.0075 Score=60.35 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=66.7
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CC--cccCCHHHH-hhcCCEEEEecCCChh--h
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SY--PFYSNVCEL-AANCDILIICCGLTAE--T 234 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~--~~~~~l~e~-l~~aDvV~l~~p~~~~--t 234 (300)
.+.++++.|+|.|.+|++++..|...|++|++++|+.+... +. ....++.+. ...+|+|+.+.|..-. +
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~ 455 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNV 455 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCC
Confidence 47789999999999999999999999999999998754311 11 111222222 2357888888875421 1
Q ss_pred hh-cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 235 HH-MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 235 ~~-li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
.. .++. ..+++..+++|+.-.+. ++.-|..|-+.|
T Consensus 456 ~~~pl~~---~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G 491 (529)
T PLN02520 456 DETPISK---HALKHYSLVFDAVYTPK-ITRLLREAEESG 491 (529)
T ss_pred CCCcccH---hhCCCCCEEEEeccCCC-cCHHHHHHHHCC
Confidence 11 1332 34677888899876653 344444444444
No 302
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.18 E-value=0.075 Score=49.46 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=65.3
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CcccCCHHHHhhcCCEEEEec-
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS--------------VS--YPFYSNVCELAANCDILIICC- 228 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~e~l~~aDvV~l~~- 228 (300)
+.|.+|+++|- +++-++++..+..+|++|.+..+..-.. .+ .....++++++++||+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 67899999997 7889999999999999998776543211 11 123578999999999998843
Q ss_pred -CCC-----hh-----hhhcchHHHHhcCCCCcEEEEcC
Q 022233 229 -GLT-----AE-----THHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 229 -p~~-----~~-----t~~li~~~~l~~mk~ga~lIn~s 256 (300)
... ++ ..-.++++.++.+|++++|.-+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 111 11 12256888888899999887775
No 303
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.15 E-value=0.031 Score=53.57 Aligned_cols=103 Identities=27% Similarity=0.465 Sum_probs=70.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC---CC---------------------CCcccCCHHHHh-
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP---SV---------------------SYPFYSNVCELA- 218 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~---~~---------------------~~~~~~~l~e~l- 218 (300)
+.+|.|+||.|=|+|+.|+.+|+.|...|.+|+..+-+... .. +.... +-++++
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i-~~~e~~~ 280 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYI-TNEELLE 280 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEc-ccccccc
Confidence 44589999999999999999999999999999876654330 00 11222 224444
Q ss_pred hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI 275 (300)
Q Consensus 219 ~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i 275 (300)
..||+++=| ++++.|+.+-...++.. +++--+-|++- .+|--..+ +..|
T Consensus 281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~-erGI 329 (411)
T COG0334 281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILL-ERGI 329 (411)
T ss_pred ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHH-HCCC
Confidence 468877665 45677888888888766 77888888865 44433333 4444
No 304
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.13 E-value=0.0071 Score=61.46 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=60.1
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-------cccCCHHHH-hhcCCEEEEecCCChhhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY-------PFYSNVCEL-AANCDILIICCGLTAETH 235 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~-------~~~~~l~e~-l~~aDvV~l~~p~~~~t~ 235 (300)
..++.|+|+|++|+.+++.|...|.++++.|.+++.. .+. ...+.++++ +++||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 4579999999999999999999999999998876532 121 111223333 678999999998776655
Q ss_pred hcchHHHHhcCCCCcEEEEcCCC
Q 022233 236 HMINKQVLSALGKEGVVINIGRG 258 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~srg 258 (300)
.++ .....+.|...+|--+|.
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARARG 500 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeCC
Confidence 433 334445566555544443
No 305
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.12 E-value=0.055 Score=50.04 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=72.1
Q ss_pred CCEEEEEec-ChhHHHHHHHHHhCCCE-EEEECCC--CCCCCCCcccCCHHHHhhc--CCEEEEecCCChhhhhcchHHH
Q 022233 169 GKRVGIVGL-GSIGSLVAKRLDAFGCS-ISYNSRT--KKPSVSYPFYSNVCELAAN--CDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 169 g~~vgIiG~-G~IG~~~A~~l~~~g~~-V~~~~~~--~~~~~~~~~~~~l~e~l~~--aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.+|.|.|. |.+|+.+.++|..+|++ |+..++. .....+...+.++.|+-.. .|+.++++|.. .+...+ ++.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l-~e~ 85 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI-LEA 85 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH-HHH
Confidence 458889998 88999999999999986 3345555 3344567778899999887 89999999943 333333 233
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~ 279 (300)
.++=-+.++++.-+- +.-++++|.+..++..++-.|
T Consensus 86 ~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvlG 121 (291)
T PRK05678 86 IDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLIG 121 (291)
T ss_pred HHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEEC
Confidence 332123344444333 344455889998888776443
No 306
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.10 E-value=0.014 Score=62.34 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=44.9
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCC-CE-------------EEEECCCCCCCC-------CC---cc-cCCHH---HHhh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFG-CS-------------ISYNSRTKKPSV-------SY---PF-YSNVC---ELAA 219 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g-~~-------------V~~~~~~~~~~~-------~~---~~-~~~l~---e~l~ 219 (300)
+.++|+|||.|.||+..|+.|.... .+ |.+.|++.+... +. .. +.+.+ ++++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 4779999999999999999998643 33 777887653211 11 11 23444 4457
Q ss_pred cCCEEEEecCCC
Q 022233 220 NCDILIICCGLT 231 (300)
Q Consensus 220 ~aDvV~l~~p~~ 231 (300)
++|+|++++|..
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 899999999964
No 307
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.09 E-value=0.12 Score=48.06 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=65.4
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-----------CC--CcccCCHHHHhhcCCEEEEec----
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-----------VS--YPFYSNVCELAANCDILIICC---- 228 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----------~~--~~~~~~l~e~l~~aDvV~l~~---- 228 (300)
+.|.+|+++|- +++.++++..+..+|++|.+..+..-.. .+ .....+++++++++|+|..-.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence 67899999998 7899999999999999998876643211 11 223578999999999998752
Q ss_pred CCC---hh-----hhhcchHHHHhcCCCCcEEEEcC
Q 022233 229 GLT---AE-----THHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 229 p~~---~~-----t~~li~~~~l~~mk~ga~lIn~s 256 (300)
... .+ ..--++++.++.+|++++|.-+.
T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence 111 11 12235778888889998887774
No 308
>PRK08328 hypothetical protein; Provisional
Probab=96.08 E-value=0.026 Score=50.37 Aligned_cols=37 Identities=38% Similarity=0.494 Sum_probs=32.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT 201 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~ 201 (300)
..|.+++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45899999999999999999999999998 67777643
No 309
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.06 E-value=0.026 Score=53.35 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=33.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT 201 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~ 201 (300)
..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35899999999999999999999999998 88888764
No 310
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.00 E-value=0.083 Score=48.71 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCC--CCCCCCCcccCCHHHHhhcCCEEEEecCCChhhh----------h
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT--KKPSVSYPFYSNVCELAANCDILIICCGLTAETH----------H 236 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~--~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~----------~ 236 (300)
|++++|||-=.=-..+++.|...|++|..+.-. ...-.++......++.++++|+|++-+|.+.... -
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~ 80 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV 80 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence 679999999888899999999999998766432 1212244444566667999999999999665421 1
Q ss_pred cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233 237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276 (300)
Q Consensus 237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~ 276 (300)
.+++++++.|+++++ +-++ ++..++-++.++.+|.
T Consensus 81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK 115 (287)
T ss_pred cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence 246889999997654 4444 3445555577777774
No 311
>PRK12862 malic enzyme; Reviewed
Probab=95.99 E-value=0.16 Score=53.07 Aligned_cols=138 Identities=12% Similarity=0.157 Sum_probs=96.7
Q ss_pred CeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHH
Q 022233 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKR 187 (300)
Q Consensus 108 gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~ 187 (300)
+|+|.|.. . ..+|=.+++-+++.+|-. |..+...+|.|.|.|.-|..+|+.
T Consensus 161 ~ip~f~DD-~--~GTa~v~la~l~~a~~~~--------------------------~~~~~~~~iv~~GaGaag~~~a~~ 211 (763)
T PRK12862 161 KIPVFHDD-Q--HGTAIIVAAALLNGLKLV--------------------------GKDIEDVKLVASGAGAAALACLDL 211 (763)
T ss_pred CCceEecC-c--ccHHHHHHHHHHHHHHHh--------------------------CCChhhcEEEEEChhHHHHHHHHH
Confidence 57888873 2 345566677777666531 556888999999999999999999
Q ss_pred HHhCCC---EEEEECCCC-----CC--CCC-------CcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233 188 LDAFGC---SISYNSRTK-----KP--SVS-------YPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250 (300)
Q Consensus 188 l~~~g~---~V~~~~~~~-----~~--~~~-------~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga 250 (300)
|...|. +++.+|+.. .+ ... .....+|.|+++.+|+++=.- +.++++++.++.|.+..
T Consensus 212 l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~p 286 (763)
T PRK12862 212 LVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRP 286 (763)
T ss_pred HHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence 999998 688888542 11 010 012358999999999877642 14789999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233 251 VVINIGRGPIIDEQELVRCLVQGEIKGAG 279 (300)
Q Consensus 251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~ 279 (300)
++.=.|.....-..+.......+.|.+.|
T Consensus 287 iifalsNP~~E~~p~~a~~~~~~~i~atG 315 (763)
T PRK12862 287 LIFALANPTPEILPEEARAVRPDAIIATG 315 (763)
T ss_pred EEEeCCCCcccCCHHHHHHhcCCEEEEEC
Confidence 99999988863222222333334566666
No 312
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.99 E-value=0.0074 Score=50.89 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=47.8
Q ss_pred EEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC---C-------CcccCCHHHHhhcCCEEEEecCCChh
Q 022233 172 VGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV---S-------YPFYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 172 vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---~-------~~~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
|.|+|. |.+|+.+++.|...|++|....|++.+.. + .....++.++++.+|+|+.+++.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 678995 99999999999999999999988766421 1 11223567789999999999985433
No 313
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.98 E-value=0.052 Score=52.88 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=68.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------CCCc--ccCCHHHHhhcCCEEEEecCCChh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------VSYP--FYSNVCELAANCDILIICCGLTAE 233 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~~~--~~~~l~e~l~~aDvV~l~~p~~~~ 233 (300)
++.++++.|+|.|.+|.++|+.|...|++|+++++..... .+.. .....++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 3678999999999999999999999999999999864221 0111 112233556789999987543333
Q ss_pred hhhc----------ch-HHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 234 THHM----------IN-KQVL-SALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 234 t~~l----------i~-~~~l-~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
..-+ +. -+.+ ...+...+-|-=+.|..--.+-|...|+..
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~ 133 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA 133 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 2211 11 1112 222323444445688877777777788653
No 314
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.95 E-value=0.037 Score=51.23 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=26.0
Q ss_pred EEEEEecChhHHHHHHHHHhCCC-EEEEEC
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNS 199 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~ 199 (300)
+|.|+|.|.+|..+|+.|...|. +++.+|
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD 30 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVD 30 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 58999999999999999999998 677665
No 315
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.95 E-value=0.15 Score=48.50 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=62.7
Q ss_pred ccCCCEEEEEecC--------hhHHHHHHHHHhCCCEEEEECCCCCC-C-------------CC--CcccCCHHHHhhcC
Q 022233 166 KLGGKRVGIVGLG--------SIGSLVAKRLDAFGCSISYNSRTKKP-S-------------VS--YPFYSNVCELAANC 221 (300)
Q Consensus 166 ~l~g~~vgIiG~G--------~IG~~~A~~l~~~g~~V~~~~~~~~~-~-------------~~--~~~~~~l~e~l~~a 221 (300)
.|.|++|+|+|.| ++.++++..+..+|++|.+..+..-. . .+ .....+++++++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 45578888899999999887764311 0 12 12357899999999
Q ss_pred CEEEEec----C----------CChh-----------------hhhcchHHHHhcCC-CCcEEEEcC
Q 022233 222 DILIICC----G----------LTAE-----------------THHMINKQVLSALG-KEGVVINIG 256 (300)
Q Consensus 222 DvV~l~~----p----------~~~~-----------------t~~li~~~~l~~mk-~ga~lIn~s 256 (300)
|+|..-. . ..+. ..-.++++.++.++ ++++|.-+.
T Consensus 247 Dvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcL 313 (357)
T TIGR03316 247 DIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCL 313 (357)
T ss_pred CEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCC
Confidence 9998863 1 0000 11236788888888 788888773
No 316
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.92 E-value=0.15 Score=49.53 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=65.0
Q ss_pred ccCCCEEEEEecC---hhHHHHHHHHHhC-CCEEEEECCCCCCC-C---------C--CcccCCHHHHhhcCCEEEEecC
Q 022233 166 KLGGKRVGIVGLG---SIGSLVAKRLDAF-GCSISYNSRTKKPS-V---------S--YPFYSNVCELAANCDILIICCG 229 (300)
Q Consensus 166 ~l~g~~vgIiG~G---~IG~~~A~~l~~~-g~~V~~~~~~~~~~-~---------~--~~~~~~l~e~l~~aDvV~l~~p 229 (300)
.+.|++|+++|-+ ++..+++..+..+ |++|.+..+..-.. . + +....++++++++||+|....-
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 4789999999994 8999999988876 99998876643211 0 1 2235789999999999998542
Q ss_pred CC-----hhh-----hhcchHHHHhc-CCCCcEEEEcC
Q 022233 230 LT-----AET-----HHMINKQVLSA-LGKEGVVINIG 256 (300)
Q Consensus 230 ~~-----~~t-----~~li~~~~l~~-mk~ga~lIn~s 256 (300)
-. +.. .-.++++.++. .|++++|.-+.
T Consensus 318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL 355 (429)
T PRK11891 318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL 355 (429)
T ss_pred hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence 10 100 12457888888 88898888664
No 317
>PRK07411 hypothetical protein; Validated
Probab=95.91 E-value=0.028 Score=54.15 Aligned_cols=82 Identities=21% Similarity=0.173 Sum_probs=56.8
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c--
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P-- 209 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~-- 209 (300)
..|...+|+|||+|.+|..+|+.|...|. +++.+|...-.. .+ . .
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 35899999999999999999999999998 677776532110 00 0 0
Q ss_pred ----ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233 210 ----FYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG 247 (300)
Q Consensus 210 ----~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk 247 (300)
...+..+++.++|+|+.++ .+.+++.++++.....-+
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~ 154 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNK 154 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCC
Confidence 0123456788999888775 456677777766555433
No 318
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.90 E-value=0.024 Score=55.16 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=67.3
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCccc--CCHHHHhhc-CCEEEEec--CC-C
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYPFY--SNVCELAAN-CDILIICC--GL-T 231 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~~~--~~l~e~l~~-aDvV~l~~--p~-~ 231 (300)
+.|+++.|+|.|.+|.++|+.|+..|++|.++|+...... +.... ....+.+.. .|+|+..- |. .
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 6789999999999999999999999999999987542211 21111 123344454 89888864 22 2
Q ss_pred hhh-------hhcchHH-HHhcC-CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 232 AET-------HHMINKQ-VLSAL-GKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 232 ~~t-------~~li~~~-~l~~m-k~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
+.. ..++.+. ++..+ +...+-|--+.|..--..-+...|+..
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 211 1123322 22233 334555666788877777777777653
No 319
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.89 E-value=0.036 Score=48.22 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=32.7
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT 201 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~ 201 (300)
..|.+++|.|+|+|.+|..+++.|...|. +++.+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45899999999999999999999999998 68777653
No 320
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.89 E-value=0.048 Score=52.91 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=52.9
Q ss_pred cccCCCEEEEEec----------ChhHHHHHHHHHhCC-CEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecC
Q 022233 165 SKLGGKRVGIVGL----------GSIGSLVAKRLDAFG-CSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCG 229 (300)
Q Consensus 165 ~~l~g~~vgIiG~----------G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p 229 (300)
.++.|++|+|+|+ ..-...+++.|+..| .+|.+||+.-.... ......++++++++||+|+++.+
T Consensus 316 ~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~ 395 (415)
T PRK11064 316 KRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLVD 395 (415)
T ss_pred cCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECCC
Confidence 4578999999998 557789999999996 99999998743211 11134689999999999999987
Q ss_pred CCh
Q 022233 230 LTA 232 (300)
Q Consensus 230 ~~~ 232 (300)
-.+
T Consensus 396 ~~~ 398 (415)
T PRK11064 396 HSQ 398 (415)
T ss_pred CHH
Confidence 543
No 321
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.85 E-value=0.1 Score=49.07 Aligned_cols=90 Identities=12% Similarity=0.175 Sum_probs=63.9
Q ss_pred cCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCC-CC-------------CC--CcccCCHHHHhhcCCEEEEec
Q 022233 167 LGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKK-PS-------------VS--YPFYSNVCELAANCDILIICC 228 (300)
Q Consensus 167 l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~-~~-------------~~--~~~~~~l~e~l~~aDvV~l~~ 228 (300)
+.|++|++||-+ ++.++++..+..+|++|.+..+..- +. .+ .....++++++++||+|..-+
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV 232 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 679999999997 8899999999999999987765431 11 11 123478999999999998853
Q ss_pred CC---C----hh-----hhhcchHHHHh-cCCCCcEEEEcC
Q 022233 229 GL---T----AE-----THHMINKQVLS-ALGKEGVVINIG 256 (300)
Q Consensus 229 p~---~----~~-----t~~li~~~~l~-~mk~ga~lIn~s 256 (300)
=. . ++ ..--++++.++ .+|++++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 11 0 11 11235778888 478888887664
No 322
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.85 E-value=0.054 Score=51.23 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=68.5
Q ss_pred CEEEEEecChhHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCC-h-hhhhcc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAF--GCSIS-YNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLT-A-ETHHMI 238 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~--g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~-~-~t~~li 238 (300)
.+|||||. .+|+..++.++.. ++++. +++++.+.. .+...+.+++|++++.|++++++|.+ + ..+.-+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 58999999 6899999988875 46765 577765432 14446789999999999999999753 2 222112
Q ss_pred hHHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233 239 NKQVLSALGKEG-VVINIGRGPIIDEQELVRCLVQGEIKGA 278 (300)
Q Consensus 239 ~~~~l~~mk~ga-~lIn~srg~~vd~~aL~~aL~~~~i~~a 278 (300)
..+.|+.|. +++.=== ..-+.++|+++.++.++...
T Consensus 83 ---a~~aL~aGkHVL~EKPl-a~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 83 ---ARALLARGIHVLQEHPL-HPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred ---HHHHHhCCCeEEEcCCC-CHHHHHHHHHHHHHcCCEEE
Confidence 233444553 3333211 14677888888888777633
No 323
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.84 E-value=0.074 Score=49.43 Aligned_cols=96 Identities=21% Similarity=0.192 Sum_probs=68.2
Q ss_pred cCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCCCCC-C---------CCC--cccCCHHHHhhcCCEEEEecCCC
Q 022233 167 LGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRTKKP-S---------VSY--PFYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 167 l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~~~~-~---------~~~--~~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
+.|.+|+++|-| ++.++++..++.+|++|.+..+..-. . .+. ....++++++++||+|..-- ..
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~ 226 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ 226 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc
Confidence 779999999995 99999999999999999887764321 1 022 23578999999999997732 11
Q ss_pred -------hhh-----hhcchHHHHhcCCCCcEEEEcC-CCcccCH
Q 022233 232 -------AET-----HHMINKQVLSALGKEGVVINIG-RGPIIDE 263 (300)
Q Consensus 232 -------~~t-----~~li~~~~l~~mk~ga~lIn~s-rg~~vd~ 263 (300)
++. .--++++.++.++++++|.-+. ||.=|+.
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~ 271 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDP 271 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccCH
Confidence 110 1234678888889998888664 5554443
No 324
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.84 E-value=0.022 Score=56.47 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=67.3
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCccc--CCHHHHhhcCCEEEEe--cCCC--
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYPFY--SNVCELAANCDILIIC--CGLT-- 231 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~~~--~~l~e~l~~aDvV~l~--~p~~-- 231 (300)
+.+++|.|+|+|..|.++|+.|+..|++|.++|....... +.... ....+.+.++|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 5688999999999999999999999999999996542210 11111 1134556789999986 4432
Q ss_pred ---hhh-------hhcchH-HHH-hcC--------CCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233 232 ---AET-------HHMINK-QVL-SAL--------GKEGVVINIGRGPIIDEQELVRCLVQGEI 275 (300)
Q Consensus 232 ---~~t-------~~li~~-~~l-~~m--------k~ga~lIn~srg~~vd~~aL~~aL~~~~i 275 (300)
+.. ..++.+ +++ ..+ ++..+-|-=+-|.---..-|...|++...
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~ 148 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK 148 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 211 122311 222 112 12344555567777777777777766443
No 325
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.83 E-value=0.01 Score=59.75 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=56.3
Q ss_pred CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-------cccCCHHHH-hhcCCEEEEecCCChhhhh
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY-------PFYSNVCEL-AANCDILIICCGLTAETHH 236 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~-------~~~~~l~e~-l~~aDvV~l~~p~~~~t~~ 236 (300)
.++-|+|+|++|+.+|+.|+..|.++++.|.+++.. .+. .....++++ ++++|.++++++.+.++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 478999999999999999999999999998876532 111 111223332 5789999999988776654
Q ss_pred cchHHHHhcCCCCcEEEE
Q 022233 237 MINKQVLSALGKEGVVIN 254 (300)
Q Consensus 237 li~~~~l~~mk~ga~lIn 254 (300)
++.. ..+ +.+...+|-
T Consensus 498 iv~~-~~~-~~~~~~iia 513 (558)
T PRK10669 498 IVAS-ARE-KRPDIEIIA 513 (558)
T ss_pred HHHH-HHH-HCCCCeEEE
Confidence 4432 223 344555553
No 326
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.82 E-value=0.017 Score=51.33 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=48.5
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------C-C---cccCCHHHHhhcCCEEEEecCC
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------S-Y---PFYSNVCELAANCDILIICCGL 230 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~-~---~~~~~l~e~l~~aDvV~l~~p~ 230 (300)
--.++|++|.|||.|.++..=++.|..+|.+|+++.+...+.. + . ....+. +.+..+++|+.++..
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~-~dl~g~~LViaATdD 95 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDK-EFIKDKHLIVIATDD 95 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCCh-HHhCCCcEEEECCCC
Confidence 4568899999999999999999999999999999987654321 1 1 111122 346789988888753
No 327
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.82 E-value=0.011 Score=50.78 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=62.1
Q ss_pred EEEEEecChhHHHHHHH--HHhCCCEE-EEECCCCCCC----CC--CcccCCHHHHhh--cCCEEEEecCCChhhhhcch
Q 022233 171 RVGIVGLGSIGSLVAKR--LDAFGCSI-SYNSRTKKPS----VS--YPFYSNVCELAA--NCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~--l~~~g~~V-~~~~~~~~~~----~~--~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~ 239 (300)
++.|||.|++|++++.. .+..||++ ..||..++.. .+ ....+++++.++ +.|+.++|+|...+.+ +.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~--va 163 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQE--VA 163 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHHH--HH
Confidence 79999999999999974 34678987 4788776532 11 223456777777 6889999999644322 22
Q ss_pred HHHHhc-----CCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233 240 KQVLSA-----LGKEGVVINIGRGPIIDEQELVRCLV 271 (300)
Q Consensus 240 ~~~l~~-----mk~ga~lIn~srg~~vd~~aL~~aL~ 271 (300)
..+.+. +.=..+-+++.-+=+|...+|...|+
T Consensus 164 d~Lv~aGVkGIlNFtPv~l~~pe~V~V~~iDLt~eLq 200 (211)
T COG2344 164 DRLVKAGVKGILNFTPVRLQVPEGVIVENIDLTAELQ 200 (211)
T ss_pred HHHHHcCCceEEeccceEecCCCCcEEEEeehHHHHH
Confidence 222221 11123456666666666666666554
No 328
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.82 E-value=0.054 Score=52.78 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=62.2
Q ss_pred CEEEEEecChhHHHHHHHHHhC----------CCEEE-EECCCCCCCC-----CCcccCCHHHHhhc--CCEEEEecCCC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAF----------GCSIS-YNSRTKKPSV-----SYPFYSNVCELAAN--CDILIICCGLT 231 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~----------g~~V~-~~~~~~~~~~-----~~~~~~~l~e~l~~--aDvV~l~~p~~ 231 (300)
.+|||+|+|.||+.+++.+... +.+|. +++++..... ....+.++++++.+ .|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4899999999999999887542 34553 5566543321 12345688999864 69999988653
Q ss_pred hhhhhcchHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCce
Q 022233 232 AETHHMINKQVLSALGKEGVVINIGRGPII-DEQELVRCLVQGEIK 276 (300)
Q Consensus 232 ~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~aL~~aL~~~~i~ 276 (300)
.... .-..+.|+.|--+|-..-+... .-++|.++.++.++.
T Consensus 84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 2212 1122445566555533222222 336777777776653
No 329
>PRK10206 putative oxidoreductase; Provisional
Probab=95.82 E-value=0.059 Score=50.91 Aligned_cols=63 Identities=16% Similarity=0.282 Sum_probs=43.2
Q ss_pred EEEEEecChhHHH-HHHHHHh--CCCEEE-EECCCCCCC-----CC-CcccCCHHHHhh--cCCEEEEecCCChh
Q 022233 171 RVGIVGLGSIGSL-VAKRLDA--FGCSIS-YNSRTKKPS-----VS-YPFYSNVCELAA--NCDILIICCGLTAE 233 (300)
Q Consensus 171 ~vgIiG~G~IG~~-~A~~l~~--~g~~V~-~~~~~~~~~-----~~-~~~~~~l~e~l~--~aDvV~l~~p~~~~ 233 (300)
++||||+|.|++. .+..+.. -+++|. ++|++++.. .+ ...+.+++++++ +.|+|++++|....
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence 7999999998763 3454432 357775 678765322 11 335678999996 56999999997654
No 330
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.82 E-value=0.013 Score=53.99 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=68.5
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC----------CC--cccCC---HHHHhhcCCEEEEecCC
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV----------SY--PFYSN---VCELAANCDILIICCGL 230 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~----------~~--~~~~~---l~e~l~~aDvV~l~~p~ 230 (300)
+.++++.|+|.|-.|++++-.|...|+ +|.+++|+.++.. +. ....+ +.+.+..+|+|+.++|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 558899999999999999999999998 7889999764321 00 01112 23456789999999996
Q ss_pred Chhh--hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 231 TAET--HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 231 ~~~t--~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
.-.. ...++. ..+.++.+++|+--.+ ..+.-|..|-+.|
T Consensus 205 Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 245 (283)
T PRK14027 205 GMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALG 245 (283)
T ss_pred CCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCC
Confidence 5321 111332 3466788899987765 4444454444444
No 331
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.81 E-value=0.16 Score=46.50 Aligned_cols=111 Identities=16% Similarity=0.224 Sum_probs=79.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhC----CC-------EEEEECCCCC-----CCC---------CCc--ccCCHHH
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAF----GC-------SISYNSRTKK-----PSV---------SYP--FYSNVCE 216 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~----g~-------~V~~~~~~~~-----~~~---------~~~--~~~~l~e 216 (300)
|..|.+.+|.|+|.|.-|-.+|+.+... |. +++.+|+..- ... ... ...+|.|
T Consensus 20 g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e 99 (279)
T cd05312 20 GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLE 99 (279)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHH
Confidence 4567889999999999999999999876 77 7887886521 100 001 2358999
Q ss_pred Hhh--cCCEEEEecCCChhhhhcchHHHHhcCC---CCcEEEEcCCCcccCH---HHHHHHHHhCC-ceEEE
Q 022233 217 LAA--NCDILIICCGLTAETHHMINKQVLSALG---KEGVVINIGRGPIIDE---QELVRCLVQGE-IKGAG 279 (300)
Q Consensus 217 ~l~--~aDvV~l~~p~~~~t~~li~~~~l~~mk---~ga~lIn~srg~~vd~---~aL~~aL~~~~-i~~a~ 279 (300)
+++ .+|+++=.- ..-++|+++.++.|. +..++.=.|....--| ++.+++ .+|+ |.+.|
T Consensus 100 ~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~-t~G~ai~ATG 166 (279)
T cd05312 100 VVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKW-TDGRALFASG 166 (279)
T ss_pred HHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHh-hcCCEEEEeC
Confidence 999 889887752 123689999999998 8899999998876333 333333 3454 66555
No 332
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.77 E-value=0.034 Score=52.85 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=32.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT 201 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~ 201 (300)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35899999999999999999999999998 67777653
No 333
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.76 E-value=0.034 Score=53.04 Aligned_cols=84 Identities=23% Similarity=0.277 Sum_probs=60.6
Q ss_pred cCCCEEEEEecC----------hhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCC
Q 022233 167 LGGKRVGIVGLG----------SIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 167 l~g~~vgIiG~G----------~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
|.||+|||+|+- .-...++++|+..|.+|.+||+...... ......++++++++||+++++.- .
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 889999999984 4567899999999999999998654321 24556899999999999999864 3
Q ss_pred hhhhhcchHHHHhcCCCCcEEEE
Q 022233 232 AETHHMINKQVLSALGKEGVVIN 254 (300)
Q Consensus 232 ~~t~~li~~~~l~~mk~ga~lIn 254 (300)
++-+.+ +-+.+ .|| +.+++|
T Consensus 387 ~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 387 DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhcc-Chhhh-hcc-CCEEEe
Confidence 333333 32333 565 455565
No 334
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.76 E-value=0.095 Score=49.17 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=61.8
Q ss_pred CEEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CC--------cccCCHHHHhhcCCEE
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRTKKP--SV-------SY--------PFYSNVCELAANCDIL 224 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~~~~--~~-------~~--------~~~~~l~e~l~~aDvV 224 (300)
++|+|||. |.+|..+|-.|...|. ++..+|..... .. .. ....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 49999999 9999999999986665 68888874322 11 00 1123456789999999
Q ss_pred EEecCCC--h-hhhh-cc--hH----HH---HhcCC-CCcEEEEcCCCcccCHHHHHHH
Q 022233 225 IICCGLT--A-ETHH-MI--NK----QV---LSALG-KEGVVINIGRGPIIDEQELVRC 269 (300)
Q Consensus 225 ~l~~p~~--~-~t~~-li--~~----~~---l~~mk-~ga~lIn~srg~~vd~~aL~~a 269 (300)
+++.-.. + +++. ++ |. ++ +.... +.+++|.++ .++|.-.-+-.
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~ 139 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAM 139 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHH
Confidence 9986431 1 1221 11 11 11 22234 588999996 66776665543
No 335
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.75 E-value=0.024 Score=55.14 Aligned_cols=87 Identities=24% Similarity=0.223 Sum_probs=57.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-------CCCc-------ccCCHHH-HhhcCCEEEEecCCC
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-------VSYP-------FYSNVCE-LAANCDILIICCGLT 231 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------~~~~-------~~~~l~e-~l~~aDvV~l~~p~~ 231 (300)
+..+++.|+|+|.+|+.+++.|...|.+|++.+++++.. .+.. ....|++ -+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 446899999999999999999999999999998775421 1111 1112322 357899999888765
Q ss_pred hhhhhcchHHHHhcCCCCcEEEEc
Q 022233 232 AETHHMINKQVLSALGKEGVVINI 255 (300)
Q Consensus 232 ~~t~~li~~~~l~~mk~ga~lIn~ 255 (300)
..+ ++.......+.+..+++-+
T Consensus 309 ~~n--~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EAN--ILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HHH--HHHHHHHHHhCCCeEEEEE
Confidence 432 3333344445555555543
No 336
>PRK05086 malate dehydrogenase; Provisional
Probab=95.75 E-value=0.055 Score=50.49 Aligned_cols=94 Identities=17% Similarity=0.301 Sum_probs=58.1
Q ss_pred CEEEEEec-ChhHHHHHHHHHh---CCCEEEEECCCCCCC---C---CCc--c------cCCHHHHhhcCCEEEEecCCC
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDA---FGCSISYNSRTKKPS---V---SYP--F------YSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~---~g~~V~~~~~~~~~~---~---~~~--~------~~~l~e~l~~aDvV~l~~p~~ 231 (300)
++|+|||. |.||+++|..+.. .+..+..+++++... . ... . ..++.+.++++|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 9999999988743 345788888764321 0 101 0 235567889999999987642
Q ss_pred hh---hh-hcc------hHHHHhcC---CCCcEEEEcCCCcccCHHH
Q 022233 232 AE---TH-HMI------NKQVLSAL---GKEGVVINIGRGPIIDEQE 265 (300)
Q Consensus 232 ~~---t~-~li------~~~~l~~m---k~ga~lIn~srg~~vd~~a 265 (300)
.. ++ .++ -++..+.| .+.+++++++-. +|.-.
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP--~D~~t 125 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP--VNTTV 125 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc--hHHHH
Confidence 11 11 111 12333333 567899998644 44433
No 337
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.74 E-value=0.069 Score=52.30 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=67.6
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEec--CCC-h----h
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICC--GLT-A----E 233 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~--p~~-~----~ 233 (300)
++.|++|.|+|+|.+|.++|+.|+..|++|.++|...... .+......-.+.+.++|+|+..- |.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 3678999999999999999999999999999999653211 12221111123356899887632 211 1 1
Q ss_pred hh---h----cchH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 234 TH---H----MINK-QVLSA-L-----GKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 234 t~---~----li~~-~~l~~-m-----k~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
.. . ++.+ +++.. + +...+-|-=+.|..--..-|...|+..
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 11 1 1322 22222 2 334556666789888888888888764
No 338
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.74 E-value=0.066 Score=45.60 Aligned_cols=74 Identities=27% Similarity=0.362 Sum_probs=50.5
Q ss_pred EEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC------------C----------------C-Cc--------ccC
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS------------V----------------S-YP--------FYS 212 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~------------~----------------~-~~--------~~~ 212 (300)
+|+|||+|.+|..+|+.|...|. ++..+|...-.. . + .. ...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 58999999999999999999998 588777543100 0 0 00 012
Q ss_pred CHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233 213 NVCELAANCDILIICCGLTAETHHMINKQVLSA 245 (300)
Q Consensus 213 ~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~ 245 (300)
+++++++++|+|+.+ -.+.+++..+.......
T Consensus 81 ~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 81 NLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred hHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 345778899988888 45677776665555443
No 339
>PLN02527 aspartate carbamoyltransferase
Probab=95.74 E-value=0.095 Score=48.83 Aligned_cols=92 Identities=25% Similarity=0.316 Sum_probs=65.5
Q ss_pred cCCCEEEEEecC---hhHHHHHHHHHhC-CCEEEEECCCCC-CCC---------C--CcccCCHHHHhhcCCEEEEecCC
Q 022233 167 LGGKRVGIVGLG---SIGSLVAKRLDAF-GCSISYNSRTKK-PSV---------S--YPFYSNVCELAANCDILIICCGL 230 (300)
Q Consensus 167 l~g~~vgIiG~G---~IG~~~A~~l~~~-g~~V~~~~~~~~-~~~---------~--~~~~~~l~e~l~~aDvV~l~~p~ 230 (300)
+.|.+|+++|-+ ++.++++..+..+ |++|.+..+..- ... + .....++++++++||+|.... .
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~-~ 227 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR-I 227 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC-c
Confidence 678999999976 6889999998887 999987766432 110 1 123578999999999998843 2
Q ss_pred Chh--------h-----hhcchHHHHhcCCCCcEEEEcC-CCc
Q 022233 231 TAE--------T-----HHMINKQVLSALGKEGVVINIG-RGP 259 (300)
Q Consensus 231 ~~~--------t-----~~li~~~~l~~mk~ga~lIn~s-rg~ 259 (300)
..+ - .-.++++.++..+++++|.-+. ||.
T Consensus 228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~ 270 (306)
T PLN02527 228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLD 270 (306)
T ss_pred chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcc
Confidence 111 1 1345778888889999888664 554
No 340
>PRK12861 malic enzyme; Reviewed
Probab=95.73 E-value=0.17 Score=52.59 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=88.8
Q ss_pred CeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHH
Q 022233 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKR 187 (300)
Q Consensus 108 gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~ 187 (300)
.|+|.|.. -..+|=.+++-+++.+|-. |..+...+|.|.|.|.-|..+|+.
T Consensus 157 ~ipvf~DD---~qGTa~v~lA~llnal~~~--------------------------gk~l~d~~iv~~GAGaAg~~ia~~ 207 (764)
T PRK12861 157 KIPVFHDD---QHGTAITVSAAFINGLKVV--------------------------GKSIKEVKVVTSGAGAAALACLDL 207 (764)
T ss_pred CCCeeccc---cchHHHHHHHHHHHHHHHh--------------------------CCChhHcEEEEECHhHHHHHHHHH
Confidence 67887773 2345566677777766531 556888999999999999999999
Q ss_pred HHhCCC---EEEEECCCC-----CCC--C-------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233 188 LDAFGC---SISYNSRTK-----KPS--V-------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250 (300)
Q Consensus 188 l~~~g~---~V~~~~~~~-----~~~--~-------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga 250 (300)
+...|. +++.+|+.. ++. . ......+|.|+++.+|+++=. . ..++++++.++.|.+.+
T Consensus 208 l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~P 282 (764)
T PRK12861 208 LVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARP 282 (764)
T ss_pred HHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCC
Confidence 999998 688888532 110 1 001235899999999977654 2 25789999999999999
Q ss_pred EEEEcCCCccc
Q 022233 251 VVINIGRGPII 261 (300)
Q Consensus 251 ~lIn~srg~~v 261 (300)
++.=.|....-
T Consensus 283 IIFaLsNPtpE 293 (764)
T PRK12861 283 LILALANPTPE 293 (764)
T ss_pred EEEECCCCCcc
Confidence 99999988763
No 341
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.69 E-value=0.096 Score=49.41 Aligned_cols=91 Identities=8% Similarity=0.093 Sum_probs=63.8
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCC-CC-------------CC--CcccCCHHHHhhcCCEEEEe
Q 022233 166 KLGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKK-PS-------------VS--YPFYSNVCELAANCDILIIC 227 (300)
Q Consensus 166 ~l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~-~~-------------~~--~~~~~~l~e~l~~aDvV~l~ 227 (300)
.+.|.+|++||-+ ++.++++..+..+|+++.+..+..- +. .+ .....+++++++++|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4779999999986 6899999999999999988766431 11 01 22457899999999999885
Q ss_pred cCCC-------hh------hhhcchHHHHhcC-CCCcEEEEcC
Q 022233 228 CGLT-------AE------THHMINKQVLSAL-GKEGVVINIG 256 (300)
Q Consensus 228 ~p~~-------~~------t~~li~~~~l~~m-k~ga~lIn~s 256 (300)
.=.+ .. ..-.++++.++.. |++++|.-+.
T Consensus 233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL 275 (336)
T PRK03515 233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL 275 (336)
T ss_pred CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence 2110 00 1123567777774 7888887764
No 342
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.68 E-value=0.036 Score=53.00 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=55.8
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCC-------------CC----------------C-C--c--
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKP-------------SV----------------S-Y--P-- 209 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~-------------~~----------------~-~--~-- 209 (300)
..|.+++|.|||+|.+|..+++.|...|. ++..+|...-. .. + . .
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 45899999999999999999999999997 78877654110 00 0 0 0
Q ss_pred ----ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233 210 ----FYSNVCELAANCDILIICCGLTAETHHMINKQVLS 244 (300)
Q Consensus 210 ----~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~ 244 (300)
...+..++++++|+|+.|+ .+.+++.++++....
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~ 154 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEI 154 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 0124557889999887765 456778777755444
No 343
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.68 E-value=0.026 Score=54.01 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=33.1
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT 201 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~ 201 (300)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35899999999999999999999999998 78888765
No 344
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.64 E-value=0.043 Score=52.84 Aligned_cols=80 Identities=24% Similarity=0.245 Sum_probs=55.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------Cc----
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------YP---- 209 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~~---- 209 (300)
..|.+.+|.|||+|.+|..+|+.|...|. ++..+|...-.. .+ ..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 35899999999999999999999999998 677777432110 00 00
Q ss_pred ----ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233 210 ----FYSNVCELAANCDILIICCGLTAETHHMINKQVLSA 245 (300)
Q Consensus 210 ----~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~ 245 (300)
...+..++++++|+|+.++ .+..++.++++...+.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~ 156 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLA 156 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 0123456788899888765 4667777777665543
No 345
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.61 E-value=0.016 Score=59.14 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=56.2
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc-------ccCCHHH-HhhcCCEEEEecCCChhhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP-------FYSNVCE-LAANCDILIICCGLTAETH 235 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~-------~~~~l~e-~l~~aDvV~l~~p~~~~t~ 235 (300)
..++-|+|+|++|+.+|+.|.+.|.++++.|.+++.. .+.. ..+.+++ -+++||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 4689999999999999999999999999988776532 1221 1112332 2568999999997666554
Q ss_pred hcchHHHHhcCCCCcEEEE
Q 022233 236 HMINKQVLSALGKEGVVIN 254 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn 254 (300)
.++ ...+.+.|...++-
T Consensus 480 ~i~--~~ar~~~p~~~iia 496 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIA 496 (621)
T ss_pred HHH--HHHHHhCCCCeEEE
Confidence 332 33344445544443
No 346
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.60 E-value=0.079 Score=50.04 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=68.7
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC-CC-------------CC--CcccCCHHHHhhcCCEEEEec
Q 022233 166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK-PS-------------VS--YPFYSNVCELAANCDILIICC 228 (300)
Q Consensus 166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~-~~-------------~~--~~~~~~l~e~l~~aDvV~l~~ 228 (300)
.+.|.+|+++|= .++..+++..+..+|++|.+..+..- .. .+ .....+++++++++|+|..-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 478999999998 68888889999999999988776431 10 01 223578999999999999833
Q ss_pred -----CCC---hh------hhhcchHHHHhcCCCCcEEEEcC---CCcccC
Q 022233 229 -----GLT---AE------THHMINKQVLSALGKEGVVINIG---RGPIID 262 (300)
Q Consensus 229 -----p~~---~~------t~~li~~~~l~~mk~ga~lIn~s---rg~~vd 262 (300)
... ++ -.-.++++.++.+|++++|.-+. ||.=|+
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis 281 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVT 281 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceec
Confidence 110 01 01346888899999999888775 554333
No 347
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.58 E-value=0.028 Score=55.62 Aligned_cols=107 Identities=18% Similarity=0.219 Sum_probs=66.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCccc--CCHHHHhhcCCEEEEecCCChhhh----
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFY--SNVCELAANCDILIICCGLTAETH---- 235 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~--~~l~e~l~~aDvV~l~~p~~~~t~---- 235 (300)
+.|++|.|+|+|.+|.+.++.|+..|++|+++|..+... .+.... ....+.++++|+|+.+-...+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 568999999999999999999999999999999653211 122211 123456778998888643222111
Q ss_pred ------hcchHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 236 ------HMINKQVLS-AL--------GKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 236 ------~li~~~~l~-~m--------k~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
.++++-.+. .+ +...+-|-=+-|..--..-+...|+..
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~ 142 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA 142 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 122222221 11 112344555677777777777777763
No 348
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.52 E-value=0.17 Score=45.74 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=79.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCC-----------EEEEECCCCC-----C-CC----C---C----cccCCHH
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGC-----------SISYNSRTKK-----P-SV----S---Y----PFYSNVC 215 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-----------~V~~~~~~~~-----~-~~----~---~----~~~~~l~ 215 (300)
|..|.+.+|.|+|.|..|-.+|+.+...+. +++.+|+..- + .. . + ....+|.
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ 99 (254)
T cd00762 20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLE 99 (254)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHH
Confidence 455788999999999999999999987665 5777776421 1 00 0 1 1235899
Q ss_pred HHhh--cCCEEEEecCCChhhhhcchHHHHhcCC---CCcEEEEcCCCccc---CHHHHHHHHHhCCceEEEe
Q 022233 216 ELAA--NCDILIICCGLTAETHHMINKQVLSALG---KEGVVINIGRGPII---DEQELVRCLVQGEIKGAGL 280 (300)
Q Consensus 216 e~l~--~aDvV~l~~p~~~~t~~li~~~~l~~mk---~ga~lIn~srg~~v---d~~aL~~aL~~~~i~~a~L 280 (300)
|+++ .+|+++=.- ...++|.++.++.|. +..++.=.|....- ..++.+++=+.+.|.+.|.
T Consensus 100 eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGs 168 (254)
T cd00762 100 DAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGS 168 (254)
T ss_pred HHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECC
Confidence 9999 999887642 224789999999998 88999999988873 3344444433335655554
No 349
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.50 E-value=0.039 Score=51.18 Aligned_cols=90 Identities=22% Similarity=0.375 Sum_probs=58.0
Q ss_pred EEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCC----------CC----cc--cCCHHHHhhcCCEEEEecCCCh-
Q 022233 172 VGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSV----------SY----PF--YSNVCELAANCDILIICCGLTA- 232 (300)
Q Consensus 172 vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~----------~~----~~--~~~l~e~l~~aDvV~l~~p~~~- 232 (300)
|+|||.|.+|..+|-.+...| .++..+|++..... .. .. ..+ .+.+++||+|+++.....
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999999888 47999998764321 00 11 123 468999999999886422
Q ss_pred --hhh--------hcch--HHHHhcCCCCcEEEEcCCCcccCHH
Q 022233 233 --ETH--------HMIN--KQVLSALGKEGVVINIGRGPIIDEQ 264 (300)
Q Consensus 233 --~t~--------~li~--~~~l~~mk~ga~lIn~srg~~vd~~ 264 (300)
.++ .++. ...+....|.+++|+++ .++|.-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s--NP~d~~ 121 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS--NPVDIL 121 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc--ChHHHH
Confidence 111 1110 11223345789999997 444433
No 350
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.49 E-value=0.041 Score=55.70 Aligned_cols=65 Identities=20% Similarity=0.375 Sum_probs=48.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CC------cccCC---HHHHhhcCCEEEEecCC
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SY------PFYSN---VCELAANCDILIICCGL 230 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~------~~~~~---l~e~l~~aDvV~l~~p~ 230 (300)
+...++|||||-|..|+.+++.++.+|++|..++.++.... .. ..+.+ +.++.+++|+|+.....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~ 93 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH 93 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence 47899999999999999999999999999999988654211 00 01233 56677889999776443
No 351
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.49 E-value=0.16 Score=41.45 Aligned_cols=31 Identities=39% Similarity=0.506 Sum_probs=28.0
Q ss_pred EEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT 201 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~ 201 (300)
+|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998 78888765
No 352
>PRK07877 hypothetical protein; Provisional
Probab=95.45 E-value=0.068 Score=55.32 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=56.5
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCC------C------CC-----------------C-----
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKP------S------VS-----------------Y----- 208 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~------~------~~-----------------~----- 208 (300)
..|.+++|+|+|+| +|..+|..|...|. +++..|...-. . .+ .
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 35999999999999 99999999998884 67766532100 0 00 0
Q ss_pred ---cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233 209 ---PFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA 245 (300)
Q Consensus 209 ---~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~ 245 (300)
....++++++.++|+|+-|+- +-+++.++++...+.
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 012367788999999988875 567888888666554
No 353
>PLN02342 ornithine carbamoyltransferase
Probab=95.43 E-value=0.33 Score=46.02 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=64.8
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC-CC---------CC---CcccCCHHHHhhcCCEEEEec----
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK-PS---------VS---YPFYSNVCELAANCDILIICC---- 228 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~-~~---------~~---~~~~~~l~e~l~~aDvV~l~~---- 228 (300)
+.|.+|+++|- .++-++++..+..+|++|.+..+..- +. .+ +....++++++++||+|..-.
T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~ 271 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM 271 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc
Confidence 77899999997 46788888888899999987765432 11 01 234578999999999999863
Q ss_pred CCChh--------hhhcchHHHHhcCCCCcEEEEcC
Q 022233 229 GLTAE--------THHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 229 p~~~~--------t~~li~~~~l~~mk~ga~lIn~s 256 (300)
-..+. ..-.++++.++.+|++++|.-+.
T Consensus 272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 11111 11346888899999999888774
No 354
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.43 E-value=0.21 Score=44.03 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=70.3
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc----c-cCCHHHH-----hhcCCEEEEecCCCh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP----F-YSNVCEL-----AANCDILIICCGLTA 232 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~----~-~~~l~e~-----l~~aDvV~l~~p~~~ 232 (300)
.|.+|.|.|.|.+|+.+++.++..|.+|...+++.... .+.. . ..+..+. -...|+++.+++...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 47799999999999999999999999998887764321 0110 0 0112221 245899998876422
Q ss_pred hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233 233 ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE 284 (300)
Q Consensus 233 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~ 284 (300)
.....+..|+++..+++++.....+........-.+.+.-.+.+.+.
T Consensus 214 -----~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (271)
T cd05188 214 -----TLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGT 260 (271)
T ss_pred -----HHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceEEEEeecCC
Confidence 23456778899999999887654433322222333444445555443
No 355
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.42 E-value=0.078 Score=49.51 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=52.4
Q ss_pred CEEEEEe-cChhHHHHHHHHHhCCC-EEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233 170 KRVGIVG-LGSIGSLVAKRLDAFGC-SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG 247 (300)
Q Consensus 170 ~~vgIiG-~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk 247 (300)
.+|+||| .|-.|+.+.+.|..... ++.....+.... . .+.++.++++|++++++|.....+ +-.++ .+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--~---~~~~~~~~~~DvvFlalp~~~s~~--~~~~~---~~ 72 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--A---AARRELLNAADVAILCLPDDAARE--AVALI---DN 72 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--c---cCchhhhcCCCEEEECCCHHHHHH--HHHHH---Hh
Confidence 4899999 79999999999997764 555543332221 1 234566788999999998553322 21222 25
Q ss_pred CCcEEEEcC
Q 022233 248 KEGVVINIG 256 (300)
Q Consensus 248 ~ga~lIn~s 256 (300)
.|..+||.|
T Consensus 73 ~g~~VIDlS 81 (313)
T PRK11863 73 PATRVIDAS 81 (313)
T ss_pred CCCEEEECC
Confidence 689999998
No 356
>PLN02602 lactate dehydrogenase
Probab=95.39 E-value=0.037 Score=52.54 Aligned_cols=95 Identities=15% Similarity=0.310 Sum_probs=60.4
Q ss_pred CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC-------------C-Cccc--CCHHHHhhcCCEEEEecCCC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV-------------S-YPFY--SNVCELAANCDILIICCGLT 231 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-------------~-~~~~--~~l~e~l~~aDvV~l~~p~~ 231 (300)
++|+|||.|.+|..+|-.+...|. ++..+|.+.+... + .... .+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999999987775 6888998664321 0 1111 233 4489999999985432
Q ss_pred --h-hhh-hcch--H-------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233 232 --A-ETH-HMIN--K-------QVLSALGKEGVVINIGRGPIIDEQELV 267 (300)
Q Consensus 232 --~-~t~-~li~--~-------~~l~~mk~ga~lIn~srg~~vd~~aL~ 267 (300)
+ +++ .++. . ..+....+.+++|+++ .++|.-..+
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt--NPvdv~t~~ 163 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS--NPVDVLTYV 163 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CchHHHHHH
Confidence 1 223 2221 1 1233346788999997 445544433
No 357
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.36 E-value=0.062 Score=49.85 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=60.7
Q ss_pred CCEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCC-------CCCcc-cCCHHHHhh-----cCCEEEEecCCChh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPS-------VSYPF-YSNVCELAA-----NCDILIICCGLTAE 233 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~-------~~~~~-~~~l~e~l~-----~aDvV~l~~p~~~~ 233 (300)
..++||||.|+||+..+..+... ++++. +++++++.. .+... +.+.+++++ +.|+|+.++|....
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 45899999999999977766643 56765 566654321 13333 467888885 57889999875433
Q ss_pred hhhcchHHHHhcCCCCcEEEEcC---CCcc----cCHHHHH
Q 022233 234 THHMINKQVLSALGKEGVVINIG---RGPI----IDEQELV 267 (300)
Q Consensus 234 t~~li~~~~l~~mk~ga~lIn~s---rg~~----vd~~aL~ 267 (300)
.+ -.....+.|..+||-+ +|++ |+.+++.
T Consensus 84 ~e-----~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~ 119 (302)
T PRK08300 84 VR-----HAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHL 119 (302)
T ss_pred HH-----HHHHHHHcCCeEEECCccccCCcccCcCCHHHHh
Confidence 22 1223356788888886 4444 5555553
No 358
>PLN00106 malate dehydrogenase
Probab=95.32 E-value=0.051 Score=51.00 Aligned_cols=92 Identities=17% Similarity=0.234 Sum_probs=59.3
Q ss_pred CCCEEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCCCCC---C------CCc-----ccCCHHHHhhcCCEEEEecCC
Q 022233 168 GGKRVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTKKPS---V------SYP-----FYSNVCELAANCDILIICCGL 230 (300)
Q Consensus 168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~~~~---~------~~~-----~~~~l~e~l~~aDvV~l~~p~ 230 (300)
..++|+|+|. |++|..+|..|...+. ++..+|...... + ... ...++.+.+++||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 3569999999 9999999999986554 788888765221 0 001 123457899999999997643
Q ss_pred Ch---hhhh-cc--h----HHH---HhcCCCCcEEEEcCCCc
Q 022233 231 TA---ETHH-MI--N----KQV---LSALGKEGVVINIGRGP 259 (300)
Q Consensus 231 ~~---~t~~-li--~----~~~---l~~mk~ga~lIn~srg~ 259 (300)
.. .++. ++ | ++. +....+.+++|+++-.-
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 21 1221 11 1 222 23335888999987544
No 359
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.32 E-value=0.029 Score=55.35 Aligned_cols=109 Identities=14% Similarity=0.166 Sum_probs=67.9
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccC--CHHHHhhcCCEEEEec--C-CChhh
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYS--NVCELAANCDILIICC--G-LTAET 234 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~--~l~e~l~~aDvV~l~~--p-~~~~t 234 (300)
.+.+++|.|+|+|.+|+++|+.|...|++|.++|+..... .+..... ...+.+.++|+|+..- | ..+..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 4789999999999999999999999999999999754321 1222211 2234567889888762 2 22322
Q ss_pred h-------hcchHHHHhc-------C--CCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233 235 H-------HMINKQVLSA-------L--GKEGVVINIGRGPIIDEQELVRCLVQGE 274 (300)
Q Consensus 235 ~-------~li~~~~l~~-------m--k~ga~lIn~srg~~vd~~aL~~aL~~~~ 274 (300)
. .++.+-.+.. + +...+-|-=+-|..--..-|...|+...
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 1 1222222221 1 1124445556777777777777777643
No 360
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.31 E-value=0.039 Score=54.34 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=66.9
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------CCcc--cCCHHHHhhcCCEEEEec--CC-Chh
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------SYPF--YSNVCELAANCDILIICC--GL-TAE 233 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~~~~--~~~l~e~l~~aDvV~l~~--p~-~~~ 233 (300)
+.|++|+|+|+|.-|.+.|+.|...|++|+++|....... .... .....+.+.++|+|+..- |. .+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 5689999999999999999999999999999985432111 1111 111235567899998863 22 222
Q ss_pred hh-------hcchHHH--Hhc-CC-----CCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 234 TH-------HMINKQV--LSA-LG-----KEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 234 t~-------~li~~~~--l~~-mk-----~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
.+ .++++-. +.. ++ +..+-|-=+-|..--..-+...|+..
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 140 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA 140 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 11 2344333 232 32 23455555678877777777777653
No 361
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.31 E-value=0.087 Score=46.46 Aligned_cols=36 Identities=36% Similarity=0.420 Sum_probs=31.9
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK 202 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~ 202 (300)
+.++++.|.|. |.||+.+++.|...|++|.+..|+.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 67899999996 8999999999999999998877754
No 362
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.25 E-value=0.041 Score=51.96 Aligned_cols=56 Identities=23% Similarity=0.464 Sum_probs=42.4
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CC---cccCC---HHHHhhcCCEEEE
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SY---PFYSN---VCELAANCDILII 226 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~---~~~~~---l~e~l~~aDvV~l 226 (300)
+|||||.|..|+.+++.++.+|++|++++.++.... .. ..+.+ +.++++.||+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 599999999999999999999999999988654321 00 01223 6678889998754
No 363
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.25 E-value=0.037 Score=54.24 Aligned_cols=108 Identities=17% Similarity=0.273 Sum_probs=69.1
Q ss_pred cCCCEEEEEecChhHHH-HHHHHHhCCCEEEEECCCCCCC------CCCccc-CCHHHHhhcCCEEEEec--CC-Chhhh
Q 022233 167 LGGKRVGIVGLGSIGSL-VAKRLDAFGCSISYNSRTKKPS------VSYPFY-SNVCELAANCDILIICC--GL-TAETH 235 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~-~A~~l~~~g~~V~~~~~~~~~~------~~~~~~-~~l~e~l~~aDvV~l~~--p~-~~~t~ 235 (300)
.++++|.|+|+|..|.+ +|+.|+..|++|.++|....+. .+.... ..-.+.+.++|+|+..- |. ++..+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56789999999999999 7999999999999999754321 122111 11234566899988753 22 22222
Q ss_pred -------hcchH-HHHhc-CC-CCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233 236 -------HMINK-QVLSA-LG-KEGVVINIGRGPIIDEQELVRCLVQGE 274 (300)
Q Consensus 236 -------~li~~-~~l~~-mk-~ga~lIn~srg~~vd~~aL~~aL~~~~ 274 (300)
.++++ +++.. ++ ...+-|-=+.|..--..-+...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 23433 33333 33 235556667888777777778887654
No 364
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.23 E-value=0.038 Score=51.44 Aligned_cols=66 Identities=26% Similarity=0.373 Sum_probs=48.1
Q ss_pred CEEEEEecChhHH-HHHHHHHhCC--CEE-EEECCCCCCC------CCC-cccCCHHHHhhc--CCEEEEecCCChhhh
Q 022233 170 KRVGIVGLGSIGS-LVAKRLDAFG--CSI-SYNSRTKKPS------VSY-PFYSNVCELAAN--CDILIICCGLTAETH 235 (300)
Q Consensus 170 ~~vgIiG~G~IG~-~~A~~l~~~g--~~V-~~~~~~~~~~------~~~-~~~~~l~e~l~~--aDvV~l~~p~~~~t~ 235 (300)
.+|||||+|.|++ ..+..++..+ +.+ .++|+++... .+. ..+.+++++++. -|+|++++|.....+
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e 82 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE 82 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence 4899999997764 5888888776 344 5678876542 133 357799999987 499999999765544
No 365
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=95.22 E-value=0.13 Score=50.23 Aligned_cols=95 Identities=16% Similarity=0.190 Sum_probs=62.7
Q ss_pred ccccCCCEEEEEec----------ChhHHHHHHHHHhCCCEEEEECCCCCCCC--CCcccCCHHH-HhhcCCEEEEecCC
Q 022233 164 GSKLGGKRVGIVGL----------GSIGSLVAKRLDAFGCSISYNSRTKKPSV--SYPFYSNVCE-LAANCDILIICCGL 230 (300)
Q Consensus 164 g~~l~g~~vgIiG~----------G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~e-~l~~aDvV~l~~p~ 230 (300)
+..+.|++|+|+|+ ..-+..+++.|...|.+|.+||+.-.... .......+++ .++.||+|++++.-
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h 388 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH 388 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence 34578999999999 56788999999999999999998732211 1000111222 46789999999864
Q ss_pred ChhhhhcchHH-HHhcCCCCcEEEEcCCCccc
Q 022233 231 TAETHHMINKQ-VLSALGKEGVVINIGRGPII 261 (300)
Q Consensus 231 ~~~t~~li~~~-~l~~mk~ga~lIn~srg~~v 261 (300)
.+ -+. ++-+ ..+.|+...++||+ |+-+.
T Consensus 389 ~~-f~~-~~~~~~~~~~~~~~~iiD~-r~~~~ 417 (425)
T PRK15182 389 QQ-FKQ-MGSEDIRGFGKDKHVLYDL-KYVLP 417 (425)
T ss_pred HH-hhc-CCHHHHHHhcCCCCEEEEC-CCCCC
Confidence 43 232 3333 33456655689994 66653
No 366
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.21 E-value=0.12 Score=48.55 Aligned_cols=105 Identities=13% Similarity=0.214 Sum_probs=64.2
Q ss_pred CEEEEEecChhHHHHHHHHHh--------CCCEEE-EECCCCCC--CCC--------------Cc-c-cC--CHHHHh-h
Q 022233 170 KRVGIVGLGSIGSLVAKRLDA--------FGCSIS-YNSRTKKP--SVS--------------YP-F-YS--NVCELA-A 219 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~--------~g~~V~-~~~~~~~~--~~~--------------~~-~-~~--~l~e~l-~ 219 (300)
++|+|+|+|++|+.+++.|.. ++.+|. +.|++... ..+ .. . .. ++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 389999999999999999876 456654 34543210 010 00 0 11 455553 4
Q ss_pred cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCc
Q 022233 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII-DEQELVRCLVQGEI 275 (300)
Q Consensus 220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~aL~~aL~~~~i 275 (300)
++|+|+=+.|....-... -.-+.+.|+.|.-+|-.+-|.+. .-+.|.++.++++.
T Consensus 81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~ 136 (326)
T PRK06392 81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRR 136 (326)
T ss_pred CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCC
Confidence 679999998753211111 12335567788888888877775 45666676666544
No 367
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.15 E-value=0.038 Score=51.25 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=45.2
Q ss_pred CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-------cccCCHHHHhhcCCEEEEecC
Q 022233 170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY-------PFYSNVCELAANCDILIICCG 229 (300)
Q Consensus 170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~-------~~~~~l~e~l~~aDvV~l~~p 229 (300)
|+|.|.| .|.||+.+++.|...|++|.+..|+..+. .+. ....++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4799999 59999999999999999999888764321 111 122356778999999887654
No 368
>PRK05442 malate dehydrogenase; Provisional
Probab=95.14 E-value=0.22 Score=46.80 Aligned_cols=98 Identities=12% Similarity=0.139 Sum_probs=60.8
Q ss_pred CEEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCCCCC--CCC-------C--------cccCCHHHHhhcCCEE
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRTKKP--SVS-------Y--------PFYSNVCELAANCDIL 224 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~~~~--~~~-------~--------~~~~~l~e~l~~aDvV 224 (300)
++|+|||. |.+|..+|-.|...|. ++..+|..... ..+ . ....+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 39999998 9999999998876443 68888875421 110 0 1123455889999999
Q ss_pred EEecCCC--h-hhhh-cc--h----HHHH---hc-CCCCcEEEEcCCCcccCHHHHHHH
Q 022233 225 IICCGLT--A-ETHH-MI--N----KQVL---SA-LGKEGVVINIGRGPIIDEQELVRC 269 (300)
Q Consensus 225 ~l~~p~~--~-~t~~-li--~----~~~l---~~-mk~ga~lIn~srg~~vd~~aL~~a 269 (300)
+++.-.. + +++. ++ | +++. .. -++.+++|.++ .++|.-..+..
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~~ 141 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALIAM 141 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHHH
Confidence 9976421 1 1221 11 1 1222 22 33688999997 66776665543
No 369
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.06 E-value=0.3 Score=45.89 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=61.6
Q ss_pred EEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCCC--CCCCC-------C--------cccCCHHHHhhcCCEEE
Q 022233 171 RVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRTK--KPSVS-------Y--------PFYSNVCELAANCDILI 225 (300)
Q Consensus 171 ~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~~--~~~~~-------~--------~~~~~l~e~l~~aDvV~ 225 (300)
+|+|+|. |.||+.+|..|...|. ++..+|++. +...+ . ....+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999999886553 488888875 32110 0 11145678999999999
Q ss_pred EecCCC--h-hhhh-cc--h----HH---HHhcC-CCCcEEEEcCCCcccCHHHHHHH
Q 022233 226 ICCGLT--A-ETHH-MI--N----KQ---VLSAL-GKEGVVINIGRGPIIDEQELVRC 269 (300)
Q Consensus 226 l~~p~~--~-~t~~-li--~----~~---~l~~m-k~ga~lIn~srg~~vd~~aL~~a 269 (300)
++.-.. + +++. ++ | ++ .+... +|.+++|.++ .++|.-+.+..
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~ 137 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIAL 137 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHHH
Confidence 875431 1 1221 11 1 12 23334 5788888885 67776665543
No 370
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.05 E-value=0.042 Score=51.17 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=43.4
Q ss_pred EEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC----------CC------cccCCHHHHhhcCCEEEEecCC
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV----------SY------PFYSNVCELAANCDILIICCGL 230 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~----------~~------~~~~~l~e~l~~aDvV~l~~p~ 230 (300)
+|+|||.|.+|..+|-.|...|. ++..+|.+.+... .+ ....+-.+.+++||+|+++.-.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 58999999999999999887665 6888888654321 00 1111235789999999997653
No 371
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.05 E-value=0.17 Score=47.08 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=63.3
Q ss_pred CEEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCC--CCCC-------------CC--cc--cCCHHHHhhcCCEEEEe
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTK--KPSV-------------SY--PF--YSNVCELAANCDILIIC 227 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~--~~~~-------------~~--~~--~~~l~e~l~~aDvV~l~ 227 (300)
++|+|+|. |.+|..+|..|...|. +|..+|+.. +... +. .. ..+ .+.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 58999998 9999999999998876 588888843 2110 00 01 123 3459999999999
Q ss_pred cCCCh---hhh-hc------chHH---HHhcCCCCcEEEEcCCCcccCHHHHHHH----HHhCCceEE
Q 022233 228 CGLTA---ETH-HM------INKQ---VLSALGKEGVVINIGRGPIIDEQELVRC----LVQGEIKGA 278 (300)
Q Consensus 228 ~p~~~---~t~-~l------i~~~---~l~~mk~ga~lIn~srg~~vd~~aL~~a----L~~~~i~~a 278 (300)
..... .++ .+ +-.+ .+....+.+++|.++ .++|.-..+-. +...++.|.
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeec
Confidence 85321 121 11 0111 123334677777776 56665553332 334455555
No 372
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.03 E-value=0.071 Score=46.64 Aligned_cols=37 Identities=35% Similarity=0.494 Sum_probs=33.0
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
+.|+++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67899999997 67999999999999999999888654
No 373
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.02 E-value=0.12 Score=48.13 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=64.9
Q ss_pred cCCCEEEEEec---ChhHHHHHHHHHhCCC-EEEEECCCCC-CCC----CCcccCCHHHHhhcCCEEEEecCCC-----h
Q 022233 167 LGGKRVGIVGL---GSIGSLVAKRLDAFGC-SISYNSRTKK-PSV----SYPFYSNVCELAANCDILIICCGLT-----A 232 (300)
Q Consensus 167 l~g~~vgIiG~---G~IG~~~A~~l~~~g~-~V~~~~~~~~-~~~----~~~~~~~l~e~l~~aDvV~l~~p~~-----~ 232 (300)
+.|.+|+++|= +++..+++..+..+|+ +|.+..+..- +.. ......+++++++++|+|...-=-. +
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~~ 234 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDNS 234 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEECccccccccch
Confidence 67899999998 5999999999999999 8987766432 111 1234578999999999998722111 1
Q ss_pred h----h--hhcchHHHHhcCCCCcEEEEcC
Q 022233 233 E----T--HHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 233 ~----t--~~li~~~~l~~mk~ga~lIn~s 256 (300)
. . .-.++.+.++.+|++++|.-+.
T Consensus 235 ~~~~~~~~~y~v~~~~l~~a~~~~i~mHcL 264 (310)
T PRK13814 235 VDIDAFRGSFRLTPEKLYSAKPDAIVMHPG 264 (310)
T ss_pred hHHHHhCCCcccCHHHHHhcCCCCEEECCC
Confidence 1 1 1245777888888988888775
No 374
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.92 E-value=0.079 Score=49.70 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=45.3
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCC--CEEEEECCCCCCCC--C-------Cccc-----CCHHHHhhcCCEEEEecC
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFG--CSISYNSRTKKPSV--S-------YPFY-----SNVCELAANCDILIICCG 229 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~--~-------~~~~-----~~l~e~l~~aDvV~l~~p 229 (300)
++.++|+|||. |.||+.+|..|...+ .++..+|+...... . .... .+..+.+++||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56779999999 999999999998544 47888887322210 1 1111 122678999999998765
Q ss_pred C
Q 022233 230 L 230 (300)
Q Consensus 230 ~ 230 (300)
.
T Consensus 86 ~ 86 (321)
T PTZ00325 86 V 86 (321)
T ss_pred C
Confidence 4
No 375
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.92 E-value=0.02 Score=45.13 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=59.5
Q ss_pred ecChhHHHHHHHHHhC----CCEEE-EECCC--CCCC-----CCCcccCCHHHHhh--cCCEEEEecCCChhhhhcchHH
Q 022233 176 GLGSIGSLVAKRLDAF----GCSIS-YNSRT--KKPS-----VSYPFYSNVCELAA--NCDILIICCGLTAETHHMINKQ 241 (300)
Q Consensus 176 G~G~IG~~~A~~l~~~----g~~V~-~~~~~--~~~~-----~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~~ 241 (300)
|+|.||+.+++.+... +++|. +++++ .... .......++++++. ..|+|+=|.+..+. . +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~-~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAV-A----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHH-H----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHH-H----HH
Confidence 8999999999999865 67765 55665 1111 12344678999988 89999999543322 2 33
Q ss_pred HHhcCCCCcEEEEcCCCccc---CHHHHHHHHHhCCc
Q 022233 242 VLSALGKEGVVINIGRGPII---DEQELVRCLVQGEI 275 (300)
Q Consensus 242 ~l~~mk~ga~lIn~srg~~v---d~~aL~~aL~~~~i 275 (300)
..+.|+.|.-+|-.+-+.+. .-+.|.++.++++.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~ 112 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV 112 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence 45667789999999988888 34445555555443
No 376
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.92 E-value=0.13 Score=46.52 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=44.9
Q ss_pred EEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--C-------CcccCCHHHHh------hc-CCEEEEecCCC
Q 022233 171 RVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--S-------YPFYSNVCELA------AN-CDILIICCGLT 231 (300)
Q Consensus 171 ~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~-------~~~~~~l~e~l------~~-aDvV~l~~p~~ 231 (300)
+|.|.|. |.+|+.+++.|...|++|.+..|++.... + ....+++.+++ .. +|.|+++.|..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 4678887 99999999999999999999888764321 1 11234566666 45 89999887754
No 377
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=94.91 E-value=0.047 Score=50.40 Aligned_cols=95 Identities=15% Similarity=0.246 Sum_probs=69.4
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----C--------------CCccc----------CCH
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----V--------------SYPFY----------SNV 214 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~--------------~~~~~----------~~l 214 (300)
+....+.++-++|+|.+|-..+......|+-|..++-.+... . ++... .-+
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 445778899999999999999999999999888877543210 0 11111 123
Q ss_pred HHHhhcCCEEEEe--cCCChhhhhcchHHHHhcCCCCcEEEEcC--CCc
Q 022233 215 CELAANCDILIIC--CGLTAETHHMINKQVLSALGKEGVVINIG--RGP 259 (300)
Q Consensus 215 ~e~l~~aDvV~l~--~p~~~~t~~li~~~~l~~mk~ga~lIn~s--rg~ 259 (300)
.+.+++.|+||.. +|..+. ..++.++..+.||||+++||.+ +|+
T Consensus 239 a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlAa~~GG 286 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLAAETGG 286 (356)
T ss_pred HHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEehhhcCC
Confidence 4567899999875 455444 4578999999999999999985 553
No 378
>PRK04148 hypothetical protein; Provisional
Probab=94.88 E-value=0.06 Score=43.97 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=48.9
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-----cccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SY-----PFYSNVCELAANCDILIICCGLTAETHHM 237 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~-----~~~~~l~e~l~~aDvV~l~~p~~~~t~~l 237 (300)
+++++..||+| -|..+|..|+..|++|++.|.++.... .. ..+..--++-+.+|+|-..=|..+-...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~ 94 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFI 94 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHH
Confidence 46799999999 899999999999999999998876321 11 11223346678888887776644433333
No 379
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.87 E-value=0.12 Score=48.28 Aligned_cols=91 Identities=15% Similarity=0.261 Sum_probs=58.2
Q ss_pred EEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCCCCCC-----C----Cccc-----CCHHHHhhcCCEEEEecCCCh-
Q 022233 171 RVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTKKPSV-----S----YPFY-----SNVCELAANCDILIICCGLTA- 232 (300)
Q Consensus 171 ~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-----~----~~~~-----~~l~e~l~~aDvV~l~~p~~~- 232 (300)
+|+|||. |.+|.++|-.|...+. ++..+|.++.... . .... .++.+.+++||+|+++.-...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999999986664 7888888662210 0 1111 134688999999999875421
Q ss_pred --hhh-hcc--hH----H---HHhcCCCCcEEEEcCCCcccCH
Q 022233 233 --ETH-HMI--NK----Q---VLSALGKEGVVINIGRGPIIDE 263 (300)
Q Consensus 233 --~t~-~li--~~----~---~l~~mk~ga~lIn~srg~~vd~ 263 (300)
.++ .++ |. + .+..-.|.+++|+++ .++|.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs--NPvDv 121 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT--NPVNS 121 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec--Cchhh
Confidence 122 111 11 1 223336899999996 45554
No 380
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=94.86 E-value=0.33 Score=45.77 Aligned_cols=90 Identities=12% Similarity=0.172 Sum_probs=63.8
Q ss_pred cCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCC-CC-------------CC--CcccCCHHHHhhcCCEEEEec
Q 022233 167 LGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKK-PS-------------VS--YPFYSNVCELAANCDILIICC 228 (300)
Q Consensus 167 l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~-~~-------------~~--~~~~~~l~e~l~~aDvV~l~~ 228 (300)
+.|++|++||-+ ++.++.+..+..+|++|.+..+..- +. .+ .....++++++++||+|..-.
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 232 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV 232 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence 678999999975 8899999999999999988766421 10 11 234578999999999998842
Q ss_pred CC--------Chh-----hhhcchHHHHhcCC-CCcEEEEcC
Q 022233 229 GL--------TAE-----THHMINKQVLSALG-KEGVVINIG 256 (300)
Q Consensus 229 p~--------~~~-----t~~li~~~~l~~mk-~ga~lIn~s 256 (300)
=. .++ -.-.++++.++.++ ++++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 10 001 11245778888886 588887764
No 381
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=94.86 E-value=0.22 Score=46.47 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=48.5
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCC-C-----------CC-CcccCCHHHHhhcCCEEEEe
Q 022233 166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKP-S-----------VS-YPFYSNVCELAANCDILIIC 227 (300)
Q Consensus 166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~-~-----------~~-~~~~~~l~e~l~~aDvV~l~ 227 (300)
.+.|++|++||- +++.++++..+..+|++|.+..+..-. . .+ .....+++++++++|+|..-
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 478999999998 799999999999999999887764321 0 01 22357899999999999884
No 382
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.85 E-value=0.029 Score=45.50 Aligned_cols=33 Identities=42% Similarity=0.563 Sum_probs=28.7
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT 201 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~ 201 (300)
.++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999998 78887753
No 383
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.84 E-value=0.13 Score=47.38 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=53.5
Q ss_pred CEEEEEecChhHHHHHHHHHh-CCCEEE-EECCCCCCC-------CCCc-ccCCHHHHhh--cCCEEEEecCCChhhhhc
Q 022233 170 KRVGIVGLGSIGSLVAKRLDA-FGCSIS-YNSRTKKPS-------VSYP-FYSNVCELAA--NCDILIICCGLTAETHHM 237 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~-~g~~V~-~~~~~~~~~-------~~~~-~~~~l~e~l~--~aDvV~l~~p~~~~t~~l 237 (300)
.+|||||.|+||+..+..+.. -++++. +++++++.. .+.. .+.+.+++++ +-|+|++++|.....+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e-- 79 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR-- 79 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence 479999999999988776664 356765 566655321 1332 3457888885 5788999998654433
Q ss_pred chHHHHhcCCCCcEEEEcC
Q 022233 238 INKQVLSALGKEGVVINIG 256 (300)
Q Consensus 238 i~~~~l~~mk~ga~lIn~s 256 (300)
-....++.|..+|+-.
T Consensus 80 ---~a~~al~aGk~VIdek 95 (285)
T TIGR03215 80 ---HARLLAELGKIVIDLT 95 (285)
T ss_pred ---HHHHHHHcCCEEEECC
Confidence 2233355677776664
No 384
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.83 E-value=0.053 Score=53.27 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=63.8
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCC------Cccc-CCHHHHhhcCCEEEEecCC---Chhhh--
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVS------YPFY-SNVCELAANCDILIICCGL---TAETH-- 235 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~------~~~~-~~l~e~l~~aDvV~l~~p~---~~~t~-- 235 (300)
.|++|+|+|+|.-|.++|+.|+. |.+|+++|........ .... ....+.+.++|+|+..--. ++...
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 47899999999999999999995 9999999854322110 0000 1123456789998886322 22211
Q ss_pred -----hcchHH-HH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 236 -----HMINKQ-VL-SALGK-EGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 236 -----~li~~~-~l-~~mk~-ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
.++++- ++ ..+++ ..+=|-=+.|..--..-+...|+..
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 129 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN 129 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 133322 32 33332 2444555678877777777777763
No 385
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=94.81 E-value=0.09 Score=43.61 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=52.5
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCC---cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSY---PFYSNVCELAANCDILIICCGLTAETHHMINKQVL 243 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~---~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l 243 (300)
..|++|++||+= ++++++++..+.++.++++++...... ......++++.+||+|+++-. .-..+-+ ..++
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~iL 82 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DDIL 82 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HHHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HHHH
Confidence 468999999961 237888887889999999987542211 123456789999999998632 1111111 4566
Q ss_pred hcCCCCcEEEEcC
Q 022233 244 SALGKEGVVINIG 256 (300)
Q Consensus 244 ~~mk~ga~lIn~s 256 (300)
+..+++..++=++
T Consensus 83 ~~~~~~~~vil~G 95 (147)
T PF04016_consen 83 ELARNAREVILYG 95 (147)
T ss_dssp HHTTTSSEEEEES
T ss_pred HhCccCCeEEEEe
Confidence 6667666665554
No 386
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.80 E-value=0.075 Score=51.82 Aligned_cols=108 Identities=18% Similarity=0.274 Sum_probs=67.9
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---------CCCccc-CC-HHHHhhcCCEEEEecCCC---h
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---------VSYPFY-SN-VCELAANCDILIICCGLT---A 232 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~~~~~~-~~-l~e~l~~aDvV~l~~p~~---~ 232 (300)
+.++++.|+|.|.+|.++|+.|+..|++|.++|...... .+.... .. .++.+.++|+|+..--.. +
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 568999999999999999999999999999998654321 121111 11 233457899998864333 2
Q ss_pred hhhh-------cch-HHHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233 233 ETHH-------MIN-KQVLSA-LG---KEGVVINIGRGPIIDEQELVRCLVQGE 274 (300)
Q Consensus 233 ~t~~-------li~-~~~l~~-mk---~ga~lIn~srg~~vd~~aL~~aL~~~~ 274 (300)
..+. ++. .+++.. ++ ...+-|-=+-|..--..-+...|+...
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 2221 222 223333 32 234555556788777777777777543
No 387
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=94.78 E-value=0.33 Score=44.81 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=71.1
Q ss_pred CCEEEEEec-ChhHHHHHHHHHhCCCEEE-EECCC--CCCCCCCcccCCHHHHhhc--CCEEEEecCCChhhhhcchHHH
Q 022233 169 GKRVGIVGL-GSIGSLVAKRLDAFGCSIS-YNSRT--KKPSVSYPFYSNVCELAAN--CDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~-~~~~~--~~~~~~~~~~~~l~e~l~~--aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+.+|.|.|. |.+|+.+-+.+...|.++. ..++. .....+...+.+++|+-+. .|+.++++|.. .+...+. +.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l~-e~ 83 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAIF-EA 83 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHHH-HH
Confidence 557888884 8999999999999898743 35555 3334466778899998887 79999999943 3343432 23
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a 278 (300)
.+.=-+.++++.-+-++ -++++|.+..++..++-.
T Consensus 84 ~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~giril 118 (286)
T TIGR01019 84 IDAGIELIVCITEGIPV-HDMLKVKRYMEESGTRLI 118 (286)
T ss_pred HHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCEEE
Confidence 22211234444444333 367789988888776543
No 388
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.75 E-value=0.11 Score=48.60 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=59.1
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc-----cCCHHHHhh---cCCEEEEecCCChh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF-----YSNVCELAA---NCDILIICCGLTAE 233 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~l~---~aDvV~l~~p~~~~ 233 (300)
.|.+|.|+|.|.+|...++.++..|. +|++.+++++.. .++.. ..++.+... ..|+|+-++.....
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~ 248 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSS 248 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHH
Confidence 48899999999999999999999998 588877765431 12211 123444332 27999888653221
Q ss_pred hhhcchHHHHhcCCCCcEEEEcCC
Q 022233 234 THHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 234 t~~li~~~~l~~mk~ga~lIn~sr 257 (300)
-...++.++++..++.++.
T Consensus 249 -----~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 249 -----INTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -----HHHHHHHhhcCCEEEEEcc
Confidence 1356778899999999875
No 389
>PRK15076 alpha-galactosidase; Provisional
Probab=94.74 E-value=0.034 Score=54.25 Aligned_cols=109 Identities=9% Similarity=0.038 Sum_probs=67.2
Q ss_pred CEEEEEecChhHHHHHH--HH---HhC-CCEEEEECCCCCCCC-------------C----CcccCCHHHHhhcCCEEEE
Q 022233 170 KRVGIVGLGSIGSLVAK--RL---DAF-GCSISYNSRTKKPSV-------------S----YPFYSNVCELAANCDILII 226 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~--~l---~~~-g~~V~~~~~~~~~~~-------------~----~~~~~~l~e~l~~aDvV~l 226 (300)
++|+|||.|.+|...+- .+ .++ |.+|..+|..++... + .....++.+++++||+|++
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 48999999999965544 22 223 458999998754311 1 1123577899999999999
Q ss_pred ecCCChhh-h------------------hc--------------chHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022233 227 CCGLTAET-H------------------HM--------------INKQ---VLSALGKEGVVINIGRGPIIDEQELVRCL 270 (300)
Q Consensus 227 ~~p~~~~t-~------------------~l--------------i~~~---~l~~mk~ga~lIn~srg~~vd~~aL~~aL 270 (300)
++-..... . .. +-.+ .+....|++++||.+-..=+-..++. .+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 88653111 1 00 0011 23334689999999877755566665 33
Q ss_pred HhCCceEEE
Q 022233 271 VQGEIKGAG 279 (300)
Q Consensus 271 ~~~~i~~a~ 279 (300)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 444565554
No 390
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.67 E-value=0.05 Score=49.84 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=64.8
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCCCCc--ccCCHH-HH-hhcCCEEEEecCCChh--h---hhcc
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSVSYP--FYSNVC-EL-AANCDILIICCGLTAE--T---HHMI 238 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~~~~--~~~~l~-e~-l~~aDvV~l~~p~~~~--t---~~li 238 (300)
++++.|+|.|-.+++++-.|+..|+ +|.+++|+.++..... ...+.. ++ ...+|+||.++|..-. . ...+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi 201 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAF 201 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCC
Confidence 4689999999999999999999998 5999999865432100 001111 11 2558999999996422 1 1123
Q ss_pred hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
+. ..++++.+++|+.-.+ ..+.-|..|-+.|
T Consensus 202 ~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 232 (272)
T PRK12550 202 PE---AEIDAASVVFDVVALP-AETPLIRYARARG 232 (272)
T ss_pred CH---HHcCCCCEEEEeecCC-ccCHHHHHHHHCc
Confidence 33 3467788999998766 3444444443433
No 391
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.66 E-value=0.093 Score=48.45 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=54.0
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCCCCCC---CcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPSVS---YPFYSNVCELAANCDILIICCGLTAETHHMINKQVL 243 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~~~~~---~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l 243 (300)
.|+++.|+|.|.||...++.++.+|.+ |.+.++....... ......-++.-...|+|+-++..... + ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~~----~-~~~~ 218 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSL----I-DTLV 218 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHHH----H-HHHH
Confidence 367899999999999999999999997 5556654332111 11111111122357988888753221 1 3456
Q ss_pred hcCCCCcEEEEcC
Q 022233 244 SALGKEGVVINIG 256 (300)
Q Consensus 244 ~~mk~ga~lIn~s 256 (300)
+.++++..++.++
T Consensus 219 ~~l~~~G~iv~~G 231 (308)
T TIGR01202 219 RRLAKGGEIVLAG 231 (308)
T ss_pred HhhhcCcEEEEEe
Confidence 7788888888776
No 392
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.58 E-value=0.33 Score=43.97 Aligned_cols=93 Identities=20% Similarity=0.245 Sum_probs=66.8
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhC----CC-------EEEEECCCC----CCC--C-----------CCcccCCHH
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAF----GC-------SISYNSRTK----KPS--V-----------SYPFYSNVC 215 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~----g~-------~V~~~~~~~----~~~--~-----------~~~~~~~l~ 215 (300)
|..|.+.+|.|+|.|.-|-.+|+.+... |. +++.+|+.. ... . ......+|.
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~ 99 (255)
T PF03949_consen 20 GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLL 99 (255)
T ss_dssp TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHH
T ss_pred CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHH
Confidence 4568899999999999999999999877 87 477777642 110 0 111124899
Q ss_pred HHhhcC--CEEEEecCCChhhhhcchHHHHhcCCC---CcEEEEcCCCcc
Q 022233 216 ELAANC--DILIICCGLTAETHHMINKQVLSALGK---EGVVINIGRGPI 260 (300)
Q Consensus 216 e~l~~a--DvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lIn~srg~~ 260 (300)
|+++.+ |+++=.- ...++|+++.++.|.+ ..++.=.|....
T Consensus 100 eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~ 145 (255)
T PF03949_consen 100 EAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFPLSNPTP 145 (255)
T ss_dssp HHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE-SSSCG
T ss_pred HHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEECCCCCC
Confidence 999999 9888763 1467899999999987 899999998887
No 393
>PRK14851 hypothetical protein; Provisional
Probab=94.57 E-value=0.12 Score=53.26 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=31.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSR 200 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~ 200 (300)
..|++++|+|+|+|.+|..+|..|...|. ++...|.
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF 75 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 45899999999999999999999999997 6666653
No 394
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.52 E-value=0.27 Score=45.40 Aligned_cols=38 Identities=34% Similarity=0.448 Sum_probs=33.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTK 202 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~ 202 (300)
..|.+.+|.|+|+|.+|..+|+.|...|. +|+.+|...
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 35889999999999999999999999998 688887543
No 395
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=94.47 E-value=0.28 Score=47.97 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=65.5
Q ss_pred EEEEEec-ChhHHHHHHHHHhC-------CC--EEEEECCCCCCCCC---------------CcccCCHHHHhhcCCEEE
Q 022233 171 RVGIVGL-GSIGSLVAKRLDAF-------GC--SISYNSRTKKPSVS---------------YPFYSNVCELAANCDILI 225 (300)
Q Consensus 171 ~vgIiG~-G~IG~~~A~~l~~~-------g~--~V~~~~~~~~~~~~---------------~~~~~~l~e~l~~aDvV~ 225 (300)
+|+|||. |.+|..+|-.|... |. ++..+|++.+...+ .....+-.+.+++||+|+
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiVV 181 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWAL 181 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEEE
Confidence 9999999 99999999998865 44 67888887654321 011134457899999999
Q ss_pred EecCCC--h-hhh-hcc--h----HH---HHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 226 ICCGLT--A-ETH-HMI--N----KQ---VLSA-LGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 226 l~~p~~--~-~t~-~li--~----~~---~l~~-mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
++.-.. + .++ .++ | ++ .+.. -.+.+++|.++ .++|.-..+-.-..
T Consensus 182 itAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s 240 (444)
T PLN00112 182 LIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA 240 (444)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence 976431 1 111 111 1 11 2333 46789999997 77887776654444
No 396
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.46 E-value=0.079 Score=38.74 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=31.4
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS 205 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~ 205 (300)
++.|||.|.+|-.+|..|+.+|.+|+++.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999988876543
No 397
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.41 E-value=0.13 Score=46.69 Aligned_cols=85 Identities=24% Similarity=0.324 Sum_probs=56.6
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCCCC-----CCCccc---CCHHH----Hh--hcCCEEEEecCCCh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPS-----VSYPFY---SNVCE----LA--ANCDILIICCGLTA 232 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~~~-----~~~~~~---~~l~e----~l--~~aDvV~l~~p~~~ 232 (300)
.|.+|.|+|.|.||..+++.++.+|.+ |++.+++++.. .++... .+..+ +. ...|+++-++....
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 478999999999999999999999996 87777654321 122111 11112 11 24799888765322
Q ss_pred hhhhcchHHHHhcCCCCcEEEEcCC
Q 022233 233 ETHHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 233 ~t~~li~~~~l~~mk~ga~lIn~sr 257 (300)
. -...+..++++..++.++-
T Consensus 200 ~-----~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 200 A-----VRACLESLDVGGTAVLAGS 219 (280)
T ss_pred H-----HHHHHHHhcCCCEEEEecc
Confidence 2 2345677889999988873
No 398
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.40 E-value=0.097 Score=49.16 Aligned_cols=85 Identities=28% Similarity=0.421 Sum_probs=58.1
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC---CC-----CCCCccc----CCHHH--HhhcCCEEEEecCCChh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK---KP-----SVSYPFY----SNVCE--LAANCDILIICCGLTAE 233 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~---~~-----~~~~~~~----~~l~e--~l~~aDvV~l~~p~~~~ 233 (300)
.|.+|.|+|.|.||...++.++..|.+|++.+++. +. ..++... .++.+ .....|+|+-++....
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 47899999999999999999999999999888732 11 1122111 11111 2245799999875322
Q ss_pred hhhcchHHHHhcCCCCcEEEEcCC
Q 022233 234 THHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 234 t~~li~~~~l~~mk~ga~lIn~sr 257 (300)
.-.+.++.|+++..++.++.
T Consensus 251 ----~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ----LAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ----HHHHHHHHccCCcEEEEEec
Confidence 12456788999999888764
No 399
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.40 E-value=0.035 Score=48.86 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=51.5
Q ss_pred EEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-------CCC-------cccCCHHHHhhcCCEEEEecCCC-----
Q 022233 172 VGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-------VSY-------PFYSNVCELAANCDILIICCGLT----- 231 (300)
Q Consensus 172 vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------~~~-------~~~~~l~e~l~~aDvV~l~~p~~----- 231 (300)
|.|+|. |.+|+.+++.|...+++|.+..|+.... .+. ...+++.++++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 678895 9999999999999999998887765321 122 12346778899999999999943
Q ss_pred hhhhhcchHHHHh
Q 022233 232 AETHHMINKQVLS 244 (300)
Q Consensus 232 ~~t~~li~~~~l~ 244 (300)
+....++++..-+
T Consensus 81 ~~~~~li~Aa~~a 93 (233)
T PF05368_consen 81 EQQKNLIDAAKAA 93 (233)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhHHHhhhcc
Confidence 1234455544433
No 400
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.39 E-value=0.23 Score=42.79 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=47.8
Q ss_pred CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC---CC-----c--ccCCHHHHhhcCCEEEEecCCC
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV---SY-----P--FYSNVCELAANCDILIICCGLT 231 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---~~-----~--~~~~l~e~l~~aDvV~l~~p~~ 231 (300)
|+|+|||. |.+|+.+++-+...|++|+..-|++.+.. +. . ...++.+.+..-|+|+.+.-..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 58999995 99999999999999999998888765432 11 1 1234557899999999987644
No 401
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.33 E-value=0.11 Score=50.75 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=65.8
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----C-----CCccc--CCHHHHhhcCCEEEEec--CC-Chhh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----V-----SYPFY--SNVCELAANCDILIICC--GL-TAET 234 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~-----~~~~~--~~l~e~l~~aDvV~l~~--p~-~~~t 234 (300)
+-+++|+|+|.+|.++|+.|+..|++|.++|...... . +.... ..-.+.+.++|+|+..- |. +|..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 4589999999999999999999999999999754321 0 21111 11234567899887753 22 2221
Q ss_pred h-------hcchH-HHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 235 H-------HMINK-QVLS-ALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 235 ~-------~li~~-~~l~-~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
. .++.+ +++. .++...+-|-=+.|..--..-+...|+..
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 133 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA 133 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 1 13322 2332 23434555666688877777777777754
No 402
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.31 E-value=0.14 Score=48.00 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=60.0
Q ss_pred EEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCCCCC--CCC---------------CcccCCHHHHhhcCCEEE
Q 022233 171 RVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRTKKP--SVS---------------YPFYSNVCELAANCDILI 225 (300)
Q Consensus 171 ~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~~~~--~~~---------------~~~~~~l~e~l~~aDvV~ 225 (300)
+|+|||. |.+|+.+|-.|...|. ++..+|..... ..+ .....+..+.+++||+|+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVV 84 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAAL 84 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEEE
Confidence 8999998 9999999999987664 68888885421 110 011134568899999999
Q ss_pred EecCCC--h-hhhh-cc--hHH-------HHhcCCC-CcEEEEcCCCcccCHHHHH
Q 022233 226 ICCGLT--A-ETHH-MI--NKQ-------VLSALGK-EGVVINIGRGPIIDEQELV 267 (300)
Q Consensus 226 l~~p~~--~-~t~~-li--~~~-------~l~~mk~-ga~lIn~srg~~vd~~aL~ 267 (300)
++.-.. + +++. ++ |.+ .+....+ .+++|.++ .++|.-.-+
T Consensus 85 itAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v 138 (323)
T TIGR01759 85 LVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNALI 138 (323)
T ss_pred EeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHHHH
Confidence 986432 1 2221 11 111 1222334 88999886 666655543
No 403
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=94.25 E-value=0.14 Score=50.93 Aligned_cols=83 Identities=24% Similarity=0.340 Sum_probs=63.2
Q ss_pred ccccCCCEEEEEecChh-HHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 164 GSKLGGKRVGIVGLGSI-GSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~I-G~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
+..+.|++..++|-..| |.+++..|+.....|+.+-.. ..++.|.+.++|+|+.++--.+ ++-
T Consensus 157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG~Pe----fVK--- 220 (935)
T KOG4230|consen 157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIGQPE----FVK--- 220 (935)
T ss_pred CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcCCcc----eee---
Confidence 33588999999998865 999999999988899765321 2478899999999999985332 232
Q ss_pred HhcCCCCcEEEEcCCCcccC
Q 022233 243 LSALGKEGVVINIGRGPIID 262 (300)
Q Consensus 243 l~~mk~ga~lIn~srg~~vd 262 (300)
-.++|||+++||++---+-|
T Consensus 221 gdWiKpGavVIDvGINyvpD 240 (935)
T KOG4230|consen 221 GDWIKPGAVVIDVGINYVPD 240 (935)
T ss_pred cccccCCcEEEEccccccCC
Confidence 24689999999998655444
No 404
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.23 E-value=0.16 Score=46.76 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=44.5
Q ss_pred CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC---------C----C-------CcccCCHHHHhhcCCEEEEe
Q 022233 169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS---------V----S-------YPFYSNVCELAANCDILIIC 227 (300)
Q Consensus 169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~----~-------~~~~~~l~e~l~~aDvV~l~ 227 (300)
|++|.|.| .|-||+.+++.|...|++|.+..|+.... . . ......++++++.+|+|+.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 83 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT 83 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence 68999999 69999999999999999998776653210 0 0 01123466788899988776
Q ss_pred cC
Q 022233 228 CG 229 (300)
Q Consensus 228 ~p 229 (300)
..
T Consensus 84 A~ 85 (322)
T PLN02662 84 AS 85 (322)
T ss_pred CC
Confidence 54
No 405
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.23 E-value=0.27 Score=45.86 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=51.4
Q ss_pred EEEEEec-ChhHHHHHHHHHhCC-CEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCC
Q 022233 171 RVGIVGL-GSIGSLVAKRLDAFG-CSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK 248 (300)
Q Consensus 171 ~vgIiG~-G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ 248 (300)
+|+|+|. |-.|..+.++|.... +++........ .. ..+.+++++++|++++++|.... ..+. ..+ .+.
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~~-~~~~~~~~~~~D~vFlalp~~~s-~~~~-~~~---~~~ 72 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----KD-AAERAKLLNAADVAILCLPDDAA-REAV-SLV---DNP 72 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----cC-cCCHhHhhcCCCEEEECCCHHHH-HHHH-HHH---HhC
Confidence 7899985 889999999999865 46654432221 11 12456777899999999995533 2222 222 256
Q ss_pred CcEEEEcC
Q 022233 249 EGVVINIG 256 (300)
Q Consensus 249 ga~lIn~s 256 (300)
|..+||.|
T Consensus 73 g~~VIDlS 80 (310)
T TIGR01851 73 NTCIIDAS 80 (310)
T ss_pred CCEEEECC
Confidence 89999998
No 406
>PRK10537 voltage-gated potassium channel; Provisional
Probab=94.17 E-value=0.14 Score=49.45 Aligned_cols=83 Identities=8% Similarity=-0.036 Sum_probs=52.8
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---CCC-------cccCCHHH-HhhcCCEEEEecCCChhhhhc
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---VSY-------PFYSNVCE-LAANCDILIICCGLTAETHHM 237 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---~~~-------~~~~~l~e-~l~~aDvV~l~~p~~~~t~~l 237 (300)
...+-|+|+|.+|+.+++.|+..|.++.+.+...... .+. ...+.|++ -+++|+.|+++.+.++++...
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i 319 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV 319 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence 5689999999999999999999898887766432211 111 11122333 267899999988866655432
Q ss_pred chHHHHhcCCCCcEEE
Q 022233 238 INKQVLSALGKEGVVI 253 (300)
Q Consensus 238 i~~~~l~~mk~ga~lI 253 (300)
....+.+.|...+|
T Consensus 320 --vL~ar~l~p~~kII 333 (393)
T PRK10537 320 --VLAAKEMSSDVKTV 333 (393)
T ss_pred --HHHHHHhCCCCcEE
Confidence 23344555554443
No 407
>PLN02214 cinnamoyl-CoA reductase
Probab=94.14 E-value=0.16 Score=47.75 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=47.4
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC------------CCC-------cccCCHHHHhhcCCEEE
Q 022233 166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS------------VSY-------PFYSNVCELAANCDILI 225 (300)
Q Consensus 166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~------------~~~-------~~~~~l~e~l~~aDvV~ 225 (300)
.+.+++|.|.|. |.||+.+++.|...|++|.+..|+.... ... ....++.++++.+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 367899999998 9999999999999999998887754310 001 11234667788899887
Q ss_pred EecC
Q 022233 226 ICCG 229 (300)
Q Consensus 226 l~~p 229 (300)
-+..
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7764
No 408
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.13 E-value=0.14 Score=45.45 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=33.4
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233 166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK 202 (300)
Q Consensus 166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~ 202 (300)
.+.||++.|.|. |.||+.+|+.|...|++|...+|+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999996 9999999999999999999888864
No 409
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.12 E-value=0.65 Score=43.82 Aligned_cols=91 Identities=9% Similarity=0.078 Sum_probs=64.3
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCC-CCC-------------CC--CcccCCHHHHhhcCCEEEEe
Q 022233 166 KLGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTK-KPS-------------VS--YPFYSNVCELAANCDILIIC 227 (300)
Q Consensus 166 ~l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~-~~~-------------~~--~~~~~~l~e~l~~aDvV~l~ 227 (300)
.+.|.+|++||-+ ++.++++..+..+|++|.+..+.. .+. .+ .....+++++++++|+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4779999999986 789999999999999998776543 110 01 22347899999999999885
Q ss_pred cC----CC----hh-----hhhcchHHHHhcC-CCCcEEEEcC
Q 022233 228 CG----LT----AE-----THHMINKQVLSAL-GKEGVVINIG 256 (300)
Q Consensus 228 ~p----~~----~~-----t~~li~~~~l~~m-k~ga~lIn~s 256 (300)
.= .. ++ -.--++++.++.. +++++|.-+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 31 00 01 1123577888875 7888888774
No 410
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.10 E-value=0.22 Score=46.94 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=51.4
Q ss_pred CCEEEEEec-ChhHHHHHHHHHhCCC---EEEEECCCCCCC--C---CC-cccCCHH-HHhhcCCEEEEecCCChhhhhc
Q 022233 169 GKRVGIVGL-GSIGSLVAKRLDAFGC---SISYNSRTKKPS--V---SY-PFYSNVC-ELAANCDILIICCGLTAETHHM 237 (300)
Q Consensus 169 g~~vgIiG~-G~IG~~~A~~l~~~g~---~V~~~~~~~~~~--~---~~-~~~~~l~-e~l~~aDvV~l~~p~~~~t~~l 237 (300)
+++|+|+|. |.+|+.+.+.|...|+ ++.+..+..... . +. ....+++ +.++++|+|++++|.... ..+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s-~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVS-KKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHH-HHH
Confidence 368999995 8999999999998655 445554332211 1 11 0111222 345789999999985432 222
Q ss_pred chHHHHhcCCCCcEEEEcCC
Q 022233 238 INKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 238 i~~~~l~~mk~ga~lIn~sr 257 (300)
. ..+ ++.|+++||.|.
T Consensus 80 ~-~~~---~~~G~~VIDlS~ 95 (334)
T PRK14874 80 A-PKA---AAAGAVVIDNSS 95 (334)
T ss_pred H-HHH---HhCCCEEEECCc
Confidence 2 222 357889999884
No 411
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.10 E-value=0.28 Score=46.37 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=55.7
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCccc---C---CHHHHhhcCCEEEEecCCChhhh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPFY---S---NVCELAANCDILIICCGLTAETH 235 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~~---~---~l~e~l~~aDvV~l~~p~~~~t~ 235 (300)
.|.+|.|.|.|.+|...++.++.+|.+|++.+.+... ..++... . .+.++....|+|+-++.....
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~-- 260 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHA-- 260 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHH--
Confidence 4789999999999999999999999998776544322 1122111 1 223333457998887652221
Q ss_pred hcchHHHHhcCCCCcEEEEcCC
Q 022233 236 HMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~sr 257 (300)
+ .+.+..++++..++.++.
T Consensus 261 --~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 261 --L-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --H-HHHHHHhcCCcEEEEeCC
Confidence 1 235677788888887763
No 412
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.09 E-value=0.12 Score=48.63 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=22.8
Q ss_pred EEEEEecChhHHHHHHHHHhCC----CEEEEE
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFG----CSISYN 198 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g----~~V~~~ 198 (300)
+|||+|+|+||+.+.+.+...+ ++|...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI 32 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL 32 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 5899999999999999988653 676544
No 413
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.04 E-value=0.39 Score=44.87 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=54.6
Q ss_pred EEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c----ccCC
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P----FYSN 213 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~----~~~~ 213 (300)
+|.|||+|.+|..+++.|...|. +++++|...-.. .+ . . ...+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 58999999999999999999998 677777532110 00 0 0 0111
Q ss_pred ---HHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233 214 ---VCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 214 ---l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~sr 257 (300)
..+.+++.|+|+.++- +.+.+..+++..... +.-+|+.+.
T Consensus 81 ~~~~~~f~~~~DvVv~a~D-n~~ar~~in~~c~~~---~ip~I~~gt 123 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALD-NLAARRHVNKMCLAA---DVPLIESGT 123 (312)
T ss_pred ccchHHHHhcCCEEEECCC-CHHHHHHHHHHHHHC---CCCEEEEec
Confidence 2377889999988874 566676676555443 344666654
No 414
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.01 E-value=0.3 Score=45.16 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=57.0
Q ss_pred EEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c----cc-C
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P----FY-S 212 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~----~~-~ 212 (300)
+|.|||+|.+|..+++.|...|. ++.+.|...-.. .+ . . .. .
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 58999999999999999999897 677776421100 00 0 0 01 1
Q ss_pred CHHHHhhcCCEEEEecCCChhhhhcchHHHHhcC-----CCCcEEEEcCCCc
Q 022233 213 NVCELAANCDILIICCGLTAETHHMINKQVLSAL-----GKEGVVINIGRGP 259 (300)
Q Consensus 213 ~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~m-----k~ga~lIn~srg~ 259 (300)
.-.+.+++.|+|+.++- +.+++..+++...... +.+.-+|+.+..+
T Consensus 81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G 131 (291)
T cd01488 81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG 131 (291)
T ss_pred hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence 12467889999988775 4566777776655543 2345577776544
No 415
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.00 E-value=0.25 Score=46.64 Aligned_cols=83 Identities=13% Similarity=0.218 Sum_probs=52.7
Q ss_pred CCCEEEEEec-ChhHHHHHHHHHh--CCC-EEEEECCCCCCCC-----CC-cccCCHHHH-hhcCCEEEEecCCChhhhh
Q 022233 168 GGKRVGIVGL-GSIGSLVAKRLDA--FGC-SISYNSRTKKPSV-----SY-PFYSNVCEL-AANCDILIICCGLTAETHH 236 (300)
Q Consensus 168 ~g~~vgIiG~-G~IG~~~A~~l~~--~g~-~V~~~~~~~~~~~-----~~-~~~~~l~e~-l~~aDvV~l~~p~~~~t~~ 236 (300)
.+.+|+|||. |..|+.+.+.|.. +.. ++........... +. ..+.++++. +.++|++++++|....
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s--- 79 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREAS--- 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHH---
Confidence 4669999998 9999999999997 543 6654432221111 10 112244443 3789999999985432
Q ss_pred cchHHHHhc-CCCCcEEEEcC
Q 022233 237 MINKQVLSA-LGKEGVVINIG 256 (300)
Q Consensus 237 li~~~~l~~-mk~ga~lIn~s 256 (300)
.++.+. .+.|..+||.|
T Consensus 80 ---~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 80 ---AAYAEEATNAGCLVIDSS 97 (336)
T ss_pred ---HHHHHHHHHCCCEEEECC
Confidence 222222 25699999998
No 416
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=93.99 E-value=0.38 Score=39.34 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=64.6
Q ss_pred HHHHHHHhCCCEEEEECCCCCCC---------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEE
Q 022233 183 LVAKRLDAFGCSISYNSRTKKPS---------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVI 253 (300)
Q Consensus 183 ~~A~~l~~~g~~V~~~~~~~~~~---------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI 253 (300)
..+++|...|++|++=.-..... .|+....+.+|++++||+|+-.=|.+ .+.++.|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 56778888899998754332211 14444556679999999998876543 34567899999998
Q ss_pred EcCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 022233 254 NIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN 285 (300)
Q Consensus 254 n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~ 285 (300)
-...-. ....+++.|.++++...++|....
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 776555 588999999999999888886544
No 417
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.95 E-value=0.086 Score=51.87 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=67.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------CCCccc-CCHHHHhhcCCEEEEecC---
Q 022233 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------VSYPFY-SNVCELAANCDILIICCG--- 229 (300)
Q Consensus 164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~~~~~-~~l~e~l~~aDvV~l~~p--- 229 (300)
+..+.+++|.|||.|.+|.++|+.|+..|++|+++++..... .+.... ..-.+....+|+|+++.-
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 456789999999999999999999999999999998654211 021111 010113456899988763
Q ss_pred CChhhh-------hcchH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 230 LTAETH-------HMINK-QVL-SALGK----EGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 230 ~~~~t~-------~li~~-~~l-~~mk~----ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
.++... .++++ +++ ..+.+ ..+-|-=+.|..--..-|...|+..
T Consensus 91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~ 147 (480)
T PRK01438 91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA 147 (480)
T ss_pred CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence 333211 12222 222 33322 2355555677777777777777653
No 418
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.92 E-value=0.086 Score=53.03 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=46.7
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C------C-------cccCCHHHHh
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S------Y-------PFYSNVCELA 218 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~------~-------~~~~~l~e~l 218 (300)
-.|++|.|.|. |.||+.+++.|...|++|.+..|+..... + . ....++.+++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 45889999996 99999999999999999998877643210 0 1 1112345568
Q ss_pred hcCCEEEEecCC
Q 022233 219 ANCDILIICCGL 230 (300)
Q Consensus 219 ~~aDvV~l~~p~ 230 (300)
.++|+||.++..
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 899999988643
No 419
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.92 E-value=0.42 Score=45.09 Aligned_cols=114 Identities=20% Similarity=0.282 Sum_probs=65.1
Q ss_pred CEEEEEecChhHHHHHHHHHh--------CC--CEEEE-ECCCCCC--CCCC---------------c-c-------cCC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDA--------FG--CSISY-NSRTKKP--SVSY---------------P-F-------YSN 213 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~--------~g--~~V~~-~~~~~~~--~~~~---------------~-~-------~~~ 213 (300)
.+|+|+|+|++|+.+++.+.. +| .+|.+ .+++... ..+. . . ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 489999999999999998876 56 45543 3432110 0000 0 0 116
Q ss_pred HHHHh--hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCce-EEEeeCCCCCCC
Q 022233 214 VCELA--ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII-DEQELVRCLVQGEIK-GAGLDVFENEPD 288 (300)
Q Consensus 214 l~e~l--~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~aL~~aL~~~~i~-~a~LDV~~~EP~ 288 (300)
+++++ ..+|+|+-+.+.. ... .-....++.|.-+|-...|.+- ..++|.+..++.+.. ...-.|--.-|.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi 156 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI 156 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence 67877 4799999887532 222 2233445667677766665443 556666666555432 222334445554
No 420
>PRK12937 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.32 Score=42.62 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=30.2
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCC
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRT 201 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~ 201 (300)
+.++++.|.|. |.||+.+|+.|...|++|+...++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 56899999995 999999999999999998766543
No 421
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.83 E-value=0.28 Score=46.48 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=49.8
Q ss_pred CEEEEEe-cChhHHHHHHHHHhCC-CEEEEECCCCC-CC--C----CC-------------cc-cCCHHHHhhcCCEEEE
Q 022233 170 KRVGIVG-LGSIGSLVAKRLDAFG-CSISYNSRTKK-PS--V----SY-------------PF-YSNVCELAANCDILII 226 (300)
Q Consensus 170 ~~vgIiG-~G~IG~~~A~~l~~~g-~~V~~~~~~~~-~~--~----~~-------------~~-~~~l~e~l~~aDvV~l 226 (300)
.+|+|+| .|.+|+.+++.|..+. +++.+..++.. .. . +. .. ..+. +.+.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCCCEEEE
Confidence 5899998 9999999999999765 47776622221 10 0 01 00 0123 34578999999
Q ss_pred ecCCChhhhhcchHHHHhcC-CCCcEEEEcC
Q 022233 227 CCGLTAETHHMINKQVLSAL-GKEGVVINIG 256 (300)
Q Consensus 227 ~~p~~~~t~~li~~~~l~~m-k~ga~lIn~s 256 (300)
++|..... +..+.+ +.|..+||.+
T Consensus 83 a~p~~~s~------~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDVAG------EVEEEFAKAGKPVFSNA 107 (349)
T ss_pred eCChhHHH------HHHHHHHHCCCEEEECC
Confidence 99865332 222222 4577778876
No 422
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.80 E-value=0.18 Score=47.40 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=58.8
Q ss_pred EEEEEec-ChhHHHHHHHHHhCC-------CEEEEECCCCCC--CCC----C-----------cccCCHHHHhhcCCEEE
Q 022233 171 RVGIVGL-GSIGSLVAKRLDAFG-------CSISYNSRTKKP--SVS----Y-----------PFYSNVCELAANCDILI 225 (300)
Q Consensus 171 ~vgIiG~-G~IG~~~A~~l~~~g-------~~V~~~~~~~~~--~~~----~-----------~~~~~l~e~l~~aDvV~ 225 (300)
+|+|+|. |.+|+.++..|...+ .+|..+|+.... ..+ . ....++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 7999999 999999999998744 478888875422 111 0 01245678899999999
Q ss_pred EecCCCh---hhh-hcc--hH----H---HHhcC-CCCcEEEEcCCCcccCHHH
Q 022233 226 ICCGLTA---ETH-HMI--NK----Q---VLSAL-GKEGVVINIGRGPIIDEQE 265 (300)
Q Consensus 226 l~~p~~~---~t~-~li--~~----~---~l~~m-k~ga~lIn~srg~~vd~~a 265 (300)
++.-... .++ .++ |. + .+... ++++++|.++ .++|.-.
T Consensus 84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (325)
T cd01336 84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA 135 (325)
T ss_pred EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence 8764321 121 111 11 1 22333 5688888887 4555544
No 423
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.77 E-value=0.15 Score=49.02 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=34.4
Q ss_pred ccccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233 164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK 202 (300)
Q Consensus 164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~ 202 (300)
+....+++|.|+|. |.||+.+++.|...|++|...+|+.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 45677899999996 9999999999999999999888764
No 424
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.73 E-value=0.33 Score=45.98 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=50.3
Q ss_pred CCEEEEEec-ChhHHHHHHHHHh-CCCE---EEEEC-CCC-CCCCCC---c-cc--CCHHHHhhcCCEEEEecCCChhhh
Q 022233 169 GKRVGIVGL-GSIGSLVAKRLDA-FGCS---ISYNS-RTK-KPSVSY---P-FY--SNVCELAANCDILIICCGLTAETH 235 (300)
Q Consensus 169 g~~vgIiG~-G~IG~~~A~~l~~-~g~~---V~~~~-~~~-~~~~~~---~-~~--~~l~e~l~~aDvV~l~~p~~~~t~ 235 (300)
+.+|||||. |..|+.+.+.|.. -.+. +..+. .+. ...... . .. .+.+ .+.++|++++++|... ..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~-~~~~~Divf~a~~~~~-s~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKIN-SFEGVDIAFFSAGGEV-SR 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHH-HhcCCCEEEECCChHH-HH
Confidence 469999998 9999999999984 4455 43332 221 111111 0 11 1333 3588999999998542 22
Q ss_pred hcchHHHHhc-CCCCcEEEEcC
Q 022233 236 HMINKQVLSA-LGKEGVVINIG 256 (300)
Q Consensus 236 ~li~~~~l~~-mk~ga~lIn~s 256 (300)
++... .+.|+.+||.|
T Consensus 83 -----~~~~~~~~~G~~VID~S 99 (347)
T PRK06728 83 -----QFVNQAVSSGAIVIDNT 99 (347)
T ss_pred -----HHHHHHHHCCCEEEECc
Confidence 22222 35789999998
No 425
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.73 E-value=0.16 Score=47.76 Aligned_cols=35 Identities=29% Similarity=0.218 Sum_probs=31.8
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCC
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRT 201 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~ 201 (300)
+++++|.|.|. |-||+.+++.|...|.+|+++++.
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 66799999995 999999999999999999988874
No 426
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=93.69 E-value=0.4 Score=45.33 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=61.6
Q ss_pred ccccCCCEEEEEec---ChhHHHHHHHHH-hCCCEEEEECCCCCC-C---------CC--CcccCCHHHHhhcCCEEEEe
Q 022233 164 GSKLGGKRVGIVGL---GSIGSLVAKRLD-AFGCSISYNSRTKKP-S---------VS--YPFYSNVCELAANCDILIIC 227 (300)
Q Consensus 164 g~~l~g~~vgIiG~---G~IG~~~A~~l~-~~g~~V~~~~~~~~~-~---------~~--~~~~~~l~e~l~~aDvV~l~ 227 (300)
|..+.|.+|++||= +++..+.+..+. .+|++|.+..+..-. . .+ .....++++++++||+|..-
T Consensus 154 g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 154 GRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 33478999999999 578888888766 459999877664321 1 01 22347899999999999884
Q ss_pred cCCC------hhh-----hhcchHHHH-hcCCCCcEEEEcC
Q 022233 228 CGLT------AET-----HHMINKQVL-SALGKEGVVINIG 256 (300)
Q Consensus 228 ~p~~------~~t-----~~li~~~~l-~~mk~ga~lIn~s 256 (300)
.--. ... .-.++.+.+ ..++++++|.-+.
T Consensus 234 ~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcL 274 (338)
T PRK08192 234 RIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPL 274 (338)
T ss_pred CcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCC
Confidence 2110 110 123456666 4578888887764
No 427
>PRK05865 hypothetical protein; Provisional
Probab=93.63 E-value=0.43 Score=50.41 Aligned_cols=90 Identities=20% Similarity=0.281 Sum_probs=57.4
Q ss_pred CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--CC-------cccCCHHHHhhcCCEEEEecCCChhh--hhc
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--SY-------PFYSNVCELAANCDILIICCGLTAET--HHM 237 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~~-------~~~~~l~e~l~~aDvV~l~~p~~~~t--~~l 237 (300)
|+|.|.|. |.||+.+++.|...|++|.+.+++..... .. ....++.++++++|+|+.+....... .++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv 80 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI 80 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence 47899995 99999999999999999998887642211 11 11234567788999988876432110 011
Q ss_pred c-hHHHHhcCCCC--cEEEEcCCCc
Q 022233 238 I-NKQVLSALGKE--GVVINIGRGP 259 (300)
Q Consensus 238 i-~~~~l~~mk~g--a~lIn~srg~ 259 (300)
. ...+++.|+.. ..+|.+|...
T Consensus 81 ~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 81 DGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCcH
Confidence 1 22344444432 3688888775
No 428
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.62 E-value=0.46 Score=42.46 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=32.7
Q ss_pred ccCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCCC
Q 022233 166 KLGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRTK 202 (300)
Q Consensus 166 ~l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~~ 202 (300)
++.||++.|.|.+ .||+++|+.|...|++|...+++.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 4789999999986 699999999999999998877764
No 429
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=93.60 E-value=0.39 Score=46.28 Aligned_cols=138 Identities=20% Similarity=0.220 Sum_probs=93.0
Q ss_pred CCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHH
Q 022233 107 RGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAK 186 (300)
Q Consensus 107 ~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~ 186 (300)
..|+|.|..- .-+|=.+++-+++.+|- . |..|+..+|.+.|.|.-|-.+++
T Consensus 166 ~~IPvFhDDq---qGTaiv~lA~llnalk~------------------------~--gk~l~d~kiv~~GAGAAgiaia~ 216 (432)
T COG0281 166 MNIPVFHDDQ---QGTAIVTLAALLNALKL------------------------T--GKKLKDQKIVINGAGAAGIAIAD 216 (432)
T ss_pred CCCCcccccc---cHHHHHHHHHHHHHHHH------------------------h--CCCccceEEEEeCCcHHHHHHHH
Confidence 3566666532 34566677777776553 1 66788999999999999999999
Q ss_pred HHHhCCC---EEEEECCCCCC-----C---CCCcc---------cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcC
Q 022233 187 RLDAFGC---SISYNSRTKKP-----S---VSYPF---------YSNVCELAANCDILIICCGLTAETHHMINKQVLSAL 246 (300)
Q Consensus 187 ~l~~~g~---~V~~~~~~~~~-----~---~~~~~---------~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~m 246 (300)
.+.+.|+ +|+..|+..-- . ..... ..+ ++.+..+|+++-+- . .+.+.++..+.|
T Consensus 217 ~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S---~--~G~~t~e~V~~M 290 (432)
T COG0281 217 LLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS---G--VGAFTEEMVKEM 290 (432)
T ss_pred HHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC---C--CCCcCHHHHHHh
Confidence 9999998 58888765211 0 00000 011 45788899777652 2 288999999999
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHHhC-CceEEE
Q 022233 247 GKEGVVINIGRGPIIDEQELVRCLVQG-EIKGAG 279 (300)
Q Consensus 247 k~ga~lIn~srg~~vd~~aL~~aL~~~-~i~~a~ 279 (300)
.+.+++.=+|-..+--....+.+...+ .|.+-|
T Consensus 291 a~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG 324 (432)
T COG0281 291 AKHPIIFALANPTPEITPEDAKEWGDGAAIVATG 324 (432)
T ss_pred ccCCEEeecCCCCccCCHHHHhhcCCCCEEEEeC
Confidence 999999999877754444444444444 454443
No 430
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.59 E-value=0.2 Score=46.69 Aligned_cols=92 Identities=15% Similarity=0.277 Sum_probs=58.7
Q ss_pred CEEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCCCCCC------C---Cccc-----CCHHHHhhcCCEEEEecCCC-
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTKKPSV------S---YPFY-----SNVCELAANCDILIICCGLT- 231 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~------~---~~~~-----~~l~e~l~~aDvV~l~~p~~- 231 (300)
++|+|||. |.+|.++|-.|...|. ++..+|.+..... . .... +++.+.+++||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 48999999 9999999999987775 7888887621110 1 1111 23468899999999876532
Q ss_pred -h-hhhh-cc--hHH-------HHhcCCCCcEEEEcCCCcccCH
Q 022233 232 -A-ETHH-MI--NKQ-------VLSALGKEGVVINIGRGPIIDE 263 (300)
Q Consensus 232 -~-~t~~-li--~~~-------~l~~mk~ga~lIn~srg~~vd~ 263 (300)
+ +++. ++ |.+ .+..-.|.+++|+++- ++|.
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN--PvDv 122 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN--PVNS 122 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC--chhh
Confidence 1 2221 22 111 2233468899999964 4554
No 431
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.59 E-value=0.16 Score=46.65 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=44.4
Q ss_pred CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-------cccCCHHHHhhcCCEEEEecC
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SY-------PFYSNVCELAANCDILIICCG 229 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~-------~~~~~l~e~l~~aDvV~l~~p 229 (300)
++|.|.|. |.||+.+++.|...|++|.+.+|+..... +. ....++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 47889985 99999999999999999998887654311 11 112346677888998887664
No 432
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.50 E-value=0.3 Score=45.68 Aligned_cols=87 Identities=15% Similarity=0.236 Sum_probs=55.2
Q ss_pred CCCEEEEEecChhHHHHHHHHHh-CC-CEEEEECCCCCCCC---CCcccCCHHHHhh--cCCEEEEecCCChhhhhcchH
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDA-FG-CSISYNSRTKKPSV---SYPFYSNVCELAA--NCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~-~g-~~V~~~~~~~~~~~---~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~ 240 (300)
.|.+|.|+|.|.||...++.++. +| .+|++.++++.+.. ........+++.. ..|+|+-++... .+...+ .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~ 240 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence 37899999999999999998885 55 57888887654321 1111111222222 379999887631 011112 3
Q ss_pred HHHhcCCCCcEEEEcC
Q 022233 241 QVLSALGKEGVVINIG 256 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~s 256 (300)
..+..++++..++.++
T Consensus 241 ~~~~~l~~~G~iv~~G 256 (341)
T cd08237 241 QIIDYIRPQGTIGLMG 256 (341)
T ss_pred HHHHhCcCCcEEEEEe
Confidence 4677889988888776
No 433
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=93.47 E-value=0.19 Score=47.77 Aligned_cols=61 Identities=25% Similarity=0.268 Sum_probs=43.7
Q ss_pred CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCc-------ccCCHHHHhhcCCEEEEec
Q 022233 168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYP-------FYSNVCELAANCDILIICC 228 (300)
Q Consensus 168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~-------~~~~l~e~l~~aDvV~l~~ 228 (300)
.+|+|.|.|. |.||+.+++.|...|++|.+.+|...... ... ...++..+++++|+|+-+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 5789999998 99999999999999999998886432110 011 1123445667899888665
No 434
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.47 E-value=0.2 Score=46.65 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=44.2
Q ss_pred CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCCC-------------C--cccC-CHHHHhhcCCEEEEec--C
Q 022233 170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSVS-------------Y--PFYS-NVCELAANCDILIICC--G 229 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~~-------------~--~~~~-~l~e~l~~aDvV~l~~--p 229 (300)
++|+|||.|.||+++|-+|...+ -++..+|...+...+ . .... .-.+.++.||+|+++. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 48999999999999999996444 478888887443211 0 0111 1146789999999988 5
Q ss_pred CCh
Q 022233 230 LTA 232 (300)
Q Consensus 230 ~~~ 232 (300)
..|
T Consensus 81 rKp 83 (313)
T COG0039 81 RKP 83 (313)
T ss_pred CCC
Confidence 444
No 435
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=93.43 E-value=0.29 Score=46.27 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=49.8
Q ss_pred EEEEEe-cChhHHHHHHHHHhCCCE---EEEECCCCCCC--C---CCc-ccCCH-HHHhhcCCEEEEecCCChhhhhcch
Q 022233 171 RVGIVG-LGSIGSLVAKRLDAFGCS---ISYNSRTKKPS--V---SYP-FYSNV-CELAANCDILIICCGLTAETHHMIN 239 (300)
Q Consensus 171 ~vgIiG-~G~IG~~~A~~l~~~g~~---V~~~~~~~~~~--~---~~~-~~~~l-~e~l~~aDvV~l~~p~~~~t~~li~ 239 (300)
+|+||| .|.+|+.+++.|...++. +.++.+..... . +.. ...++ .+.+.++|+++.++|.....+ +-
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~--~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKE--FA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHH--HH
Confidence 589999 899999999999986653 33443332211 1 110 11111 234589999999998543322 22
Q ss_pred HHHHhcCCCCcEEEEcC
Q 022233 240 KQVLSALGKEGVVINIG 256 (300)
Q Consensus 240 ~~~l~~mk~ga~lIn~s 256 (300)
..+ ++.|+++||.|
T Consensus 79 ~~~---~~~G~~VID~s 92 (339)
T TIGR01296 79 PKA---AKCGAIVIDNT 92 (339)
T ss_pred HHH---HHCCCEEEECC
Confidence 222 35688999988
No 436
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.41 E-value=0.095 Score=45.60 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=31.8
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSR 200 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~ 200 (300)
..|++++|.|||+|.+|..+|+.|...|. +++.+|.
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~ 51 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDH 51 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 35899999999999999999999999998 5777764
No 437
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=93.38 E-value=0.44 Score=45.13 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=50.8
Q ss_pred CCCEEEEEec-ChhHHHHHHHHHhCCC---EEEEEC--CCCCCCC---CCc-ccCCH-HHHhhcCCEEEEecCCChhhhh
Q 022233 168 GGKRVGIVGL-GSIGSLVAKRLDAFGC---SISYNS--RTKKPSV---SYP-FYSNV-CELAANCDILIICCGLTAETHH 236 (300)
Q Consensus 168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~---~V~~~~--~~~~~~~---~~~-~~~~l-~e~l~~aDvV~l~~p~~~~t~~ 236 (300)
...+|+|+|. |.+|+.+.+.|...++ ++.+.. ++..+.. +.. ...++ .+.+.++|+|++++|.... ..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s-~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSIS-KK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHH-HH
Confidence 3568999995 8999999999998554 443332 2211111 100 11112 2456889999999985532 22
Q ss_pred cchHHHHhcCCCCcEEEEcC
Q 022233 237 MINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 237 li~~~~l~~mk~ga~lIn~s 256 (300)
+. .+ ..+.|+.+||.|
T Consensus 85 ~~-~~---~~~~g~~VIDlS 100 (344)
T PLN02383 85 FG-PI---AVDKGAVVVDNS 100 (344)
T ss_pred HH-HH---HHhCCCEEEECC
Confidence 22 11 125789999998
No 438
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.37 E-value=0.61 Score=45.21 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=66.6
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----------CCCccc--CCHHHHhhcCCEEEEecCC---Chhh
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----------VSYPFY--SNVCELAANCDILIICCGL---TAET 234 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----------~~~~~~--~~l~e~l~~aDvV~l~~p~---~~~t 234 (300)
++.|||+|.+|.++|+.|+..|++|.++|....+. .+.... .+ .+.+.++|+|+..--. +|+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 47899999999999999999999999999654321 122111 23 4556789988875422 2322
Q ss_pred h-------hcchH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233 235 H-------HMINK-QVL-SALGKEGVVINIGRGPIIDEQELVRCLVQGE 274 (300)
Q Consensus 235 ~-------~li~~-~~l-~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~ 274 (300)
. .++.+ +++ ..++...+-|-=+.|..--..-+...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 12322 232 3344445666667888888887888887654
No 439
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.37 E-value=0.16 Score=45.35 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=46.5
Q ss_pred cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-------CCCc-----c---cCCHHHHh-hcCCEEEEe
Q 022233 165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-------VSYP-----F---YSNVCELA-ANCDILIIC 227 (300)
Q Consensus 165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------~~~~-----~---~~~l~e~l-~~aDvV~l~ 227 (300)
....+++|.|+|. |.||+.+++.|...|++|++..|+.... ..+. . ..++.+.+ ...|+|+.+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 3477899999995 9999999999999999998877654321 0111 0 11234455 579999987
Q ss_pred cCC
Q 022233 228 CGL 230 (300)
Q Consensus 228 ~p~ 230 (300)
.+.
T Consensus 93 ~g~ 95 (251)
T PLN00141 93 TGF 95 (251)
T ss_pred CCC
Confidence 664
No 440
>PRK06701 short chain dehydrogenase; Provisional
Probab=93.36 E-value=0.29 Score=44.76 Aligned_cols=38 Identities=32% Similarity=0.286 Sum_probs=33.3
Q ss_pred cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233 165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK 202 (300)
Q Consensus 165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~ 202 (300)
..+.|+++.|.|. |.||..+|+.|...|++|+..+++.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4688999999995 7899999999999999998887754
No 441
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=93.35 E-value=0.16 Score=47.65 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=47.3
Q ss_pred ccccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC----------CCC-------cccCCHHHHhhcCCEEE
Q 022233 164 GSKLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS----------VSY-------PFYSNVCELAANCDILI 225 (300)
Q Consensus 164 g~~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~~-------~~~~~l~e~l~~aDvV~ 225 (300)
|++..+++|.|.| .|-||+.+++.|...|++|.+.+++.... ... .....+++++++.|+|+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 6678899999999 59999999999999999998876653211 001 11123556777889777
Q ss_pred EecC
Q 022233 226 ICCG 229 (300)
Q Consensus 226 l~~p 229 (300)
-+..
T Consensus 85 h~A~ 88 (353)
T PLN02896 85 HVAA 88 (353)
T ss_pred ECCc
Confidence 6654
No 442
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=93.34 E-value=0.29 Score=45.21 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=43.9
Q ss_pred CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC---------C-----------CCcccCCHHHHhhcCCEEEEe
Q 022233 169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS---------V-----------SYPFYSNVCELAANCDILIIC 227 (300)
Q Consensus 169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~-----------~~~~~~~l~e~l~~aDvV~l~ 227 (300)
||++.|.|. |.||+.+++.|...|++|.+..++.... . ......+++++++..|+|+.+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~ 84 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHT 84 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEe
Confidence 789999995 9999999999999999997765543210 0 011123466778889988776
Q ss_pred cC
Q 022233 228 CG 229 (300)
Q Consensus 228 ~p 229 (300)
..
T Consensus 85 A~ 86 (325)
T PLN02989 85 AS 86 (325)
T ss_pred CC
Confidence 64
No 443
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=93.23 E-value=0.13 Score=47.10 Aligned_cols=59 Identities=29% Similarity=0.380 Sum_probs=40.1
Q ss_pred CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhc--CCEEEEecCCC
Q 022233 170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAAN--CDILIICCGLT 231 (300)
Q Consensus 170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~--aDvV~l~~p~~ 231 (300)
|+|.|+| -|.+|+.+.+.|...|++|..+++..-. ......+.+++++ .|+|+.|...+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d---l~d~~~~~~~~~~~~pd~Vin~aa~~ 62 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD---LTDPEAVAKLLEAFKPDVVINCAAYT 62 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS----TTSHHHHHHHHHHH--SEEEE-----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC---CCCHHHHHHHHHHhCCCeEeccceee
Confidence 5899999 6999999999999999999988776221 2223345566554 79998887543
No 444
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.23 E-value=0.28 Score=43.07 Aligned_cols=38 Identities=29% Similarity=0.480 Sum_probs=33.7
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
++.++++.|+|. |.||+.+++.|...|++|++.+|+..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999996 89999999999999999999988753
No 445
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.18 E-value=0.25 Score=46.11 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=55.8
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCH-HHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNV-CELAANCDILIICCGLTAETHHMINKQV 242 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l-~e~l~~aDvV~l~~p~~~~t~~li~~~~ 242 (300)
|.+|.|.|.|.+|...++.++..|.+|++.+++++.. .++....+. ++.-+..|+++.+.... . .-...
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~----~~~~~ 240 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G----LVPPA 240 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H----HHHHH
Confidence 7899999999999999999999999988887765431 122211111 11113467777665432 2 12456
Q ss_pred HhcCCCCcEEEEcCC
Q 022233 243 LSALGKEGVVINIGR 257 (300)
Q Consensus 243 l~~mk~ga~lIn~sr 257 (300)
++.++++..++.++.
T Consensus 241 ~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 241 LEALDRGGVLAVAGI 255 (329)
T ss_pred HHhhCCCcEEEEEec
Confidence 778889988888764
No 446
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=93.17 E-value=0.7 Score=44.47 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=60.7
Q ss_pred EEEEEec-ChhHHHHHHHHHhCCC-E------EEEE--CCCCCCCCC---------------CcccCCHHHHhhcCCEEE
Q 022233 171 RVGIVGL-GSIGSLVAKRLDAFGC-S------ISYN--SRTKKPSVS---------------YPFYSNVCELAANCDILI 225 (300)
Q Consensus 171 ~vgIiG~-G~IG~~~A~~l~~~g~-~------V~~~--~~~~~~~~~---------------~~~~~~l~e~l~~aDvV~ 225 (300)
+|+|||. |.+|..+|-.+...|. . +..+ |.+.+...+ .....+-.+.+++||+|+
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVV 125 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWAL 125 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEE
Confidence 9999999 9999999999886554 2 3344 665443210 011124457899999999
Q ss_pred EecCCC--h-hhhh-cc--h----HHHH---hc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 226 ICCGLT--A-ETHH-MI--N----KQVL---SA-LGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 226 l~~p~~--~-~t~~-li--~----~~~l---~~-mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
++.-.. + +++. ++ | ++.. .. -++.+++|.++ .++|.-..+-.-.+
T Consensus 126 itAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~~k~s 184 (387)
T TIGR01757 126 LIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIAMKNA 184 (387)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence 975431 1 1221 11 1 1221 22 34788999887 67777766554333
No 447
>PRK13529 malate dehydrogenase; Provisional
Probab=93.15 E-value=2.5 Score=42.45 Aligned_cols=164 Identities=17% Similarity=0.234 Sum_probs=107.1
Q ss_pred CCCcceEEEcCCCCCC-CChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCcccc
Q 022233 83 MPAVRLVMTTSAGLNH-VDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSL 161 (300)
Q Consensus 83 ~p~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~ 161 (300)
+|+. +|+.-=-+..+ +.+..--+..|.+.|.. -..+|-.+++-+|+..|-.
T Consensus 238 ~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDD---iQGTaaV~LAgll~A~r~~------------------------ 289 (563)
T PRK13529 238 FPNA-LLQFEDFAQKNARRILERYRDEICTFNDD---IQGTGAVTLAGLLAALKIT------------------------ 289 (563)
T ss_pred CCCe-EEehhhcCCchHHHHHHHhccCCCeeccc---cchHHHHHHHHHHHHHHHh------------------------
Confidence 4664 55554444433 33333344578888874 3456777888888877731
Q ss_pred CcccccCCCEEEEEecChhHHHHHHHHHh----CCC-------EEEEECCCCC-----CCC---------CCc-------
Q 022233 162 GIGSKLGGKRVGIVGLGSIGSLVAKRLDA----FGC-------SISYNSRTKK-----PSV---------SYP------- 209 (300)
Q Consensus 162 ~~g~~l~g~~vgIiG~G~IG~~~A~~l~~----~g~-------~V~~~~~~~~-----~~~---------~~~------- 209 (300)
|..|.+.+|.|+|.|..|-.+|+.+.. .|. +++.+|+..- ... ...
T Consensus 290 --g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~ 367 (563)
T PRK13529 290 --GEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDT 367 (563)
T ss_pred --CCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccccc
Confidence 445788999999999999999999886 587 7887776421 100 000
Q ss_pred --ccCCHHHHhhcC--CEEEEecCCChhhhhcchHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--hC-CceEEE
Q 022233 210 --FYSNVCELAANC--DILIICCGLTAETHHMINKQVLSALGK---EGVVINIGRGPIIDEQELVRCLV--QG-EIKGAG 279 (300)
Q Consensus 210 --~~~~l~e~l~~a--DvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lIn~srg~~vd~~aL~~aL~--~~-~i~~a~ 279 (300)
...+|.|+++.+ |+++=+- ..-+.++++.++.|.+ ..+|.=.|....-.|-.-.+|.+ +| -|.+.|
T Consensus 368 ~~~~~~L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtG 443 (563)
T PRK13529 368 EGDVISLLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATG 443 (563)
T ss_pred ccCCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEEC
Confidence 114799999998 8877642 2236799999999987 89999999888743333333333 45 455444
Q ss_pred e
Q 022233 280 L 280 (300)
Q Consensus 280 L 280 (300)
.
T Consensus 444 s 444 (563)
T PRK13529 444 S 444 (563)
T ss_pred C
Confidence 4
No 448
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=93.14 E-value=0.22 Score=45.01 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=42.8
Q ss_pred EEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcC--CEEEEecCC
Q 022233 171 RVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANC--DILIICCGL 230 (300)
Q Consensus 171 ~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~a--DvV~l~~p~ 230 (300)
+|.|+|. |.||+.+++.|...|++|...+|... ......++.++++.+ |+|+.+...
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAAY 60 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCcc
Confidence 4778885 99999999999999999998887521 122234567777766 999877643
No 449
>PLN02427 UDP-apiose/xylose synthase
Probab=93.12 E-value=0.21 Score=47.51 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=46.4
Q ss_pred ccccCCCEEEEEec-ChhHHHHHHHHHhC-CCEEEEECCCCCCC-----C-------CC-------cccCCHHHHhhcCC
Q 022233 164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAF-GCSISYNSRTKKPS-----V-------SY-------PFYSNVCELAANCD 222 (300)
Q Consensus 164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~-g~~V~~~~~~~~~~-----~-------~~-------~~~~~l~e~l~~aD 222 (300)
|..+..|+|.|.|. |-||+.+++.|... |++|.+.+++.... . .. .....+.++++++|
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 56677889999995 99999999999987 58999888653210 0 01 11224567788899
Q ss_pred EEEEec
Q 022233 223 ILIICC 228 (300)
Q Consensus 223 vV~l~~ 228 (300)
+|+-+.
T Consensus 89 ~ViHlA 94 (386)
T PLN02427 89 LTINLA 94 (386)
T ss_pred EEEEcc
Confidence 877654
No 450
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.11 E-value=0.43 Score=42.67 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=33.7
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
++.++++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999996 89999999999999999999888653
No 451
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.07 E-value=0.11 Score=55.87 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=62.4
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC----------------------------------CCCCCC----
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK----------------------------------KPSVSY---- 208 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~----------------------------------~~~~~~---- 208 (300)
+.-.++.|+|.|+.|+..++.+..+|.+ . .++.. .+...+
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~ 278 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD 278 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence 3457999999999999999999888654 1 11000 000000
Q ss_pred ------cccCC-HHHHhhcCCEEEEecCCChhhhhcchHH-HHhcCCCCc----EEEEcC
Q 022233 209 ------PFYSN-VCELAANCDILIICCGLTAETHHMINKQ-VLSALGKEG----VVINIG 256 (300)
Q Consensus 209 ------~~~~~-l~e~l~~aDvV~l~~p~~~~t~~li~~~-~l~~mk~ga----~lIn~s 256 (300)
.+... +++.+..+|+||.++-..+.+..++.++ ..+.||+|. +|+|+|
T Consensus 279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 01111 3568899999999998777788899888 788899998 899987
No 452
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=93.05 E-value=0.82 Score=43.16 Aligned_cols=96 Identities=9% Similarity=0.082 Sum_probs=62.0
Q ss_pred c-CCCEEEEEecC-------hhHHHHHHHHHhCCCEEEEECC-CCCCC--------------CC--CcccCCHHHHhhcC
Q 022233 167 L-GGKRVGIVGLG-------SIGSLVAKRLDAFGCSISYNSR-TKKPS--------------VS--YPFYSNVCELAANC 221 (300)
Q Consensus 167 l-~g~~vgIiG~G-------~IG~~~A~~l~~~g~~V~~~~~-~~~~~--------------~~--~~~~~~l~e~l~~a 221 (300)
+ .|++|+|+|.| ++.++++..+..+|++|.+..+ ..-.. .+ .....++++++++|
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 68899887644 7888999999999999988877 32110 01 22357899999999
Q ss_pred CEEEEecCCC-----h-----hh-----hhcchHHHHhcCCCCcEEEEcC---CCcccCH
Q 022233 222 DILIICCGLT-----A-----ET-----HHMINKQVLSALGKEGVVINIG---RGPIIDE 263 (300)
Q Consensus 222 DvV~l~~p~~-----~-----~t-----~~li~~~~l~~mk~ga~lIn~s---rg~~vd~ 263 (300)
|+|..-.--. + .. .-.++++.++.. ++++|.-+. ||.=|+.
T Consensus 246 Dvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~~~ll~~a-~~~i~mHcLP~~Rg~Ei~~ 304 (335)
T PRK04523 246 DVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALT-NNGVFSHCLPLRRNVKVTD 304 (335)
T ss_pred CEEEeceeeccccCCcccccHHHHHhCcCCcCCHHHHhCC-CCCEEECCCCCCCCCeeCH
Confidence 9998754211 0 11 123567777655 467776664 5554443
No 453
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.04 E-value=0.29 Score=46.31 Aligned_cols=83 Identities=25% Similarity=0.321 Sum_probs=56.5
Q ss_pred EEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC------CCCcccC-----CH----HHHh--hcCCEEEEecCCCh
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS------VSYPFYS-----NV----CELA--ANCDILIICCGLTA 232 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~------~~~~~~~-----~l----~e~l--~~aDvV~l~~p~~~ 232 (300)
++.|+|.|.||...+..++.+|. +|++.|+++... .+..... .. .++- ..+|+++-+.. ++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~~ 249 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-SP 249 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-CH
Confidence 99999999999999999999997 677888866432 1211111 11 1222 34999999987 22
Q ss_pred hhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233 233 ETHHMINKQVLSALGKEGVVINIGRG 258 (300)
Q Consensus 233 ~t~~li~~~~l~~mk~ga~lIn~srg 258 (300)
. .-.+.+...+++..++.++-.
T Consensus 250 ~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 250 P----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred H----HHHHHHHHhcCCCEEEEEecc
Confidence 2 124566778888888887744
No 454
>PRK06196 oxidoreductase; Provisional
Probab=93.01 E-value=0.25 Score=45.58 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=34.0
Q ss_pred cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
..+.|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3467899999998 78999999999999999998888643
No 455
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.99 E-value=0.24 Score=46.50 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=59.2
Q ss_pred EEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CCc--------ccCCHHHHhhcCCEEE
Q 022233 171 RVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRTKKP--SV-------SYP--------FYSNVCELAANCDILI 225 (300)
Q Consensus 171 ~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~~~~--~~-------~~~--------~~~~l~e~l~~aDvV~ 225 (300)
+|+|||. |.+|..+|..|...|. ++..+|+.+.. .. ... ...+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999986554 48888875432 11 000 0124568899999999
Q ss_pred EecCCCh---hhh-hcc--h----HH---HHhcC-CCCcEEEEcCCCcccCHHHHH
Q 022233 226 ICCGLTA---ETH-HMI--N----KQ---VLSAL-GKEGVVINIGRGPIIDEQELV 267 (300)
Q Consensus 226 l~~p~~~---~t~-~li--~----~~---~l~~m-k~ga~lIn~srg~~vd~~aL~ 267 (300)
++.-... +|+ .++ | ++ .+... ++.+++|.++ .++|.-.-+
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t~v 134 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNALV 134 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHHHH
Confidence 8764321 122 111 1 11 23334 4778888887 666665533
No 456
>PRK14852 hypothetical protein; Provisional
Probab=92.94 E-value=0.34 Score=51.60 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=30.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECC
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSR 200 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~ 200 (300)
.|++++|+|||+|.+|..+|+.|...|. ++...|.
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~ 364 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADF 364 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 5899999999999999999999999997 6666653
No 457
>PRK06523 short chain dehydrogenase; Provisional
Probab=92.93 E-value=0.87 Score=40.35 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=34.3
Q ss_pred cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
.++.|+++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 4588999999995 79999999999999999998887653
No 458
>PRK06398 aldose dehydrogenase; Validated
Probab=92.92 E-value=0.55 Score=41.90 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=33.4
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
+++||++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 477999999995 58999999999999999998887654
No 459
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.88 E-value=0.37 Score=46.42 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=50.6
Q ss_pred cCCCEEEEEec----------ChhHHHHHHHHHhCCCEEEEECCCCCCCC--CCcccCCHHHHhhcCCEEEEec
Q 022233 167 LGGKRVGIVGL----------GSIGSLVAKRLDAFGCSISYNSRTKKPSV--SYPFYSNVCELAANCDILIICC 228 (300)
Q Consensus 167 l~g~~vgIiG~----------G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~e~l~~aDvV~l~~ 228 (300)
..|++|+|+|+ ..-...+++.|...|.+|.+||+.-.... +....+++.+++++||.|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcC
Confidence 46899999999 35677999999999999999998743322 3456789999999999999975
No 460
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=92.81 E-value=0.16 Score=47.17 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=56.7
Q ss_pred EEecChhHHHHHHHHHhCCC--EEEEECCCCCCCCC---------------CcccCCHHHHhhcCCEEEEecCCC--h-h
Q 022233 174 IVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSVS---------------YPFYSNVCELAANCDILIICCGLT--A-E 233 (300)
Q Consensus 174 IiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~~---------------~~~~~~l~e~l~~aDvV~l~~p~~--~-~ 233 (300)
|||.|.+|..+|-.|...+. ++..+|.+.+...+ .....+-.+.+++||+|+++.-.. + .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 68999999999999987775 68899986543210 111123457899999999976431 1 1
Q ss_pred hh-hcc--hH-------HHHhcCCCCcEEEEcCCCcccCHHH
Q 022233 234 TH-HMI--NK-------QVLSALGKEGVVINIGRGPIIDEQE 265 (300)
Q Consensus 234 t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~~a 265 (300)
++ .++ |. ..+....+.+++|+++ .++|.-.
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t 120 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT--NPVDILT 120 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CHHHHHH
Confidence 12 111 11 1233346889999987 4555443
No 461
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=92.78 E-value=0.28 Score=43.96 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=30.6
Q ss_pred ccCCCEEEEEec---ChhHHHHHHHHHhCCCEEEEECCC
Q 022233 166 KLGGKRVGIVGL---GSIGSLVAKRLDAFGCSISYNSRT 201 (300)
Q Consensus 166 ~l~g~~vgIiG~---G~IG~~~A~~l~~~g~~V~~~~~~ 201 (300)
++.||++.|.|. +.||+++|+.|...|++|....++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~ 41 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP 41 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 367999999997 489999999999999998766543
No 462
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=92.78 E-value=0.5 Score=45.04 Aligned_cols=84 Identities=25% Similarity=0.452 Sum_probs=53.8
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCccc---CC---HHHHhhcCCEEEEecCCChhhh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPFY---SN---VCELAANCDILIICCGLTAETH 235 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~~---~~---l~e~l~~aDvV~l~~p~~~~t~ 235 (300)
.|.+|.|.|.|.+|...++.++.+|.+|++.+++.+. ..++... .+ +.+.....|+|+-++.....
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~-- 255 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA-- 255 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH--
Confidence 4789999999999999999999999998877654321 1122111 11 22233457888887642211
Q ss_pred hcchHHHHhcCCCCcEEEEcC
Q 022233 236 HMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~s 256 (300)
+ ...++.++++..++.++
T Consensus 256 --~-~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 256 --L-LPLFSLLKVSGKLVALG 273 (375)
T ss_pred --H-HHHHHhhcCCCEEEEEc
Confidence 1 23455667777777665
No 463
>PRK08324 short chain dehydrogenase; Validated
Probab=92.68 E-value=0.23 Score=51.22 Aligned_cols=39 Identities=33% Similarity=0.469 Sum_probs=34.5
Q ss_pred cccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 165 SKLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 165 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
..+.|+++.|.| .|.||+.+|+.|...|++|+..+++..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 347899999999 599999999999999999999888653
No 464
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=92.65 E-value=0.49 Score=43.93 Aligned_cols=84 Identities=27% Similarity=0.405 Sum_probs=56.2
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-c--C--C-HHHHhhcCCEEEEecCCChhhhhc
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-Y--S--N-VCELAANCDILIICCGLTAETHHM 237 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-~--~--~-l~e~l~~aDvV~l~~p~~~~t~~l 237 (300)
|.++.|.|.|.+|+.+++.++.+|.+|++.+++.+.. .+... . . + ..+.-...|+++-+++...
T Consensus 170 g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~----- 244 (337)
T cd05283 170 GKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH----- 244 (337)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc-----
Confidence 6799999999999999999999999998887764321 11111 0 1 1 1222356799988876431
Q ss_pred chHHHHhcCCCCcEEEEcCC
Q 022233 238 INKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 238 i~~~~l~~mk~ga~lIn~sr 257 (300)
.....+..+++++.+++++.
T Consensus 245 ~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 245 DLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred hHHHHHHHhcCCCEEEEEec
Confidence 12455677777778877763
No 465
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=92.64 E-value=1.7 Score=35.61 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=72.4
Q ss_pred cCCCEEEEEecC----hhHHHHHHHHHhCCCEEEEECCCCC--CCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233 167 LGGKRVGIVGLG----SIGSLVAKRLDAFGCSISYNSRTKK--PSVSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240 (300)
Q Consensus 167 l~g~~vgIiG~G----~IG~~~A~~l~~~g~~V~~~~~~~~--~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~ 240 (300)
.+-|+|+++|+. +=+..+++.|...|++|+=.++... ...|...+.||.|+-+.-|+|-+--|.. ....+. +
T Consensus 14 ~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e-~~~~i~-~ 91 (140)
T COG1832 14 KSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSE-AAPEVA-R 91 (140)
T ss_pred HhCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChh-hhHHHH-H
Confidence 457899999995 5688999999999999998888443 4456677899999999999999987743 333333 3
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233 241 QVLSALGKEGVVINIGRGPIIDEQELVRCLVQG 273 (300)
Q Consensus 241 ~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~ 273 (300)
+.++ +....+|... ++.++++-..+-+.|
T Consensus 92 eal~-~~~kv~W~Ql---Gi~n~ea~~~~~~aG 120 (140)
T COG1832 92 EALE-KGAKVVWLQL---GIRNEEAAEKARDAG 120 (140)
T ss_pred HHHh-hCCCeEEEec---CcCCHHHHHHHHHhC
Confidence 4444 2366788776 467777554443333
No 466
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.57 E-value=0.37 Score=43.25 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=32.0
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK 202 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~ 202 (300)
+.|+++.|.|. |.||+.+|+.|...|++|...+|+.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~ 39 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDE 39 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 56889999997 8899999999999999998888764
No 467
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=92.50 E-value=0.62 Score=46.52 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=63.4
Q ss_pred ccCCCEEEEEec---ChhHHHHHHHHHhCC-CEEEEECCCCCC-C---------CC--CcccCCHHHHhhcCCEE--EE-
Q 022233 166 KLGGKRVGIVGL---GSIGSLVAKRLDAFG-CSISYNSRTKKP-S---------VS--YPFYSNVCELAANCDIL--II- 226 (300)
Q Consensus 166 ~l~g~~vgIiG~---G~IG~~~A~~l~~~g-~~V~~~~~~~~~-~---------~~--~~~~~~l~e~l~~aDvV--~l- 226 (300)
.+.|.+|+++|= +++..+++..+..+| ++|.+..+..-. . .+ .....++++++++||+. +.
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~ 250 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF 250 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence 477999999999 589999999999998 899877653321 1 02 22357899999999952 23
Q ss_pred ------ecCCC--h---hh--hhcchHHHHhcCCCCcEEEEcC
Q 022233 227 ------CCGLT--A---ET--HHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 227 ------~~p~~--~---~t--~~li~~~~l~~mk~ga~lIn~s 256 (300)
.+... + .. .-.++++.++.++++++|.-+.
T Consensus 251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 12211 0 11 2245888899899999888774
No 468
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=92.48 E-value=0.29 Score=46.47 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=41.2
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-C-C-----cccCC---HHHHhh--cCCEEEEe
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-S-Y-----PFYSN---VCELAA--NCDILIIC 227 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~-~-----~~~~~---l~e~l~--~aDvV~l~ 227 (300)
+|+|||.|..|..+++.++.+|++|++++.++.... . + ..+.+ +.++++ ++|+|+..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~ 69 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE 69 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence 589999999999999999999999999888754321 0 0 01123 445565 68988754
No 469
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=92.43 E-value=0.64 Score=43.90 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=49.2
Q ss_pred CEEEEEec-ChhHHHHHHHHHhCC-CEEEEE-CCCCCCC--C----C------C----c--ccCCH-HHHhhcCCEEEEe
Q 022233 170 KRVGIVGL-GSIGSLVAKRLDAFG-CSISYN-SRTKKPS--V----S------Y----P--FYSNV-CELAANCDILIIC 227 (300)
Q Consensus 170 ~~vgIiG~-G~IG~~~A~~l~~~g-~~V~~~-~~~~~~~--~----~------~----~--~~~~l-~e~l~~aDvV~l~ 227 (300)
++|+|+|. |.+|+.+++.|.... +++... +...... . + . . .+.++ .+.+.++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 47999995 999999999998765 677644 4322110 0 0 0 0 00011 2345889999999
Q ss_pred cCCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233 228 CGLTAETHHMINKQVLSALGKEGVVINIG 256 (300)
Q Consensus 228 ~p~~~~t~~li~~~~l~~mk~ga~lIn~s 256 (300)
+|..-... +. ..+ ++.|..+||.|
T Consensus 81 ~p~~~s~~-~~-~~~---~~~G~~VIDls 104 (341)
T TIGR00978 81 LPSEVAEE-VE-PKL---AEAGKPVFSNA 104 (341)
T ss_pred CCHHHHHH-HH-HHH---HHCCCEEEECC
Confidence 98653322 21 222 24577777765
No 470
>PRK06153 hypothetical protein; Provisional
Probab=92.36 E-value=0.16 Score=48.68 Aligned_cols=92 Identities=18% Similarity=0.355 Sum_probs=59.6
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCC--------CC-----C-CCC-------------------c--
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTK--------KP-----S-VSY-------------------P-- 209 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~--------~~-----~-~~~-------------------~-- 209 (300)
.|++++|+|||+|.+|..++..|.+.|. ++..+|... .. . .+. .
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~ 252 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPH 252 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEE
Confidence 6899999999999999999999999998 777776421 10 0 000 0
Q ss_pred --cc-CCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCccc
Q 022233 210 --FY-SNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII 261 (300)
Q Consensus 210 --~~-~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v 261 (300)
.. .+-.+.+.++|+|+.|+- +.+.+.++++..... +.-+|++|-+-.+
T Consensus 253 ~~~I~~~n~~~L~~~DiV~dcvD-n~~aR~~ln~~a~~~---gIP~Id~G~~l~~ 303 (393)
T PRK06153 253 PEYIDEDNVDELDGFTFVFVCVD-KGSSRKLIVDYLEAL---GIPFIDVGMGLEL 303 (393)
T ss_pred eecCCHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEeeeccee
Confidence 00 011135677888888875 444566666555443 4456777655444
No 471
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.34 E-value=0.52 Score=43.72 Aligned_cols=85 Identities=26% Similarity=0.368 Sum_probs=56.3
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCCCC-----CCCcc---c--CCH---HHHhh--cCCEEEEecCCCh
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPS-----VSYPF---Y--SNV---CELAA--NCDILIICCGLTA 232 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~~~-----~~~~~---~--~~l---~e~l~--~aDvV~l~~p~~~ 232 (300)
|.+|.|+|.|.+|...++.++.+|.+ |++.+++.+.. .++.. . .+. .++.. ..|+|+-+.....
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~~ 243 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNTA 243 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCHH
Confidence 88999999999999999999999998 88887654321 12111 0 112 22222 4798888765322
Q ss_pred hhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233 233 ETHHMINKQVLSALGKEGVVINIGRG 258 (300)
Q Consensus 233 ~t~~li~~~~l~~mk~ga~lIn~srg 258 (300)
. ....+..+++++.++.++..
T Consensus 244 ~-----~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 244 A-----RRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred H-----HHHHHHHhhcCCEEEEEcCC
Confidence 1 13456678888888877643
No 472
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=92.33 E-value=0.49 Score=42.35 Aligned_cols=82 Identities=22% Similarity=0.289 Sum_probs=57.5
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCc---ccCCHHHHhh---cCCEEEE-----
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYP---FYSNVCELAA---NCDILII----- 226 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~---~~~~l~e~l~---~aDvV~l----- 226 (300)
+.|++|.=||+| |..+++-++..|.+|++.|.+++... +.. ...+.+|+.+ ..|+|++
T Consensus 58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 689999999998 46899999999999999998765421 111 2346677765 6899887
Q ss_pred ecCCChhhhhcchHHHHhcCCCCcEEEE
Q 022233 227 CCGLTAETHHMINKQVLSALGKEGVVIN 254 (300)
Q Consensus 227 ~~p~~~~t~~li~~~~l~~mk~ga~lIn 254 (300)
|+|..+. +-....+.+|||++++-
T Consensus 136 Hv~dp~~----~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 136 HVPDPES----FLRACAKLVKPGGILFL 159 (243)
T ss_pred ccCCHHH----HHHHHHHHcCCCcEEEE
Confidence 4443222 33457788899877553
No 473
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.33 E-value=0.35 Score=45.26 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=32.3
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
+.||+|.|.|. |-||+.+++.|...|++|++.+|+..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 45889999995 99999999999999999998887543
No 474
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=92.28 E-value=3.2 Score=41.72 Aligned_cols=141 Identities=11% Similarity=0.137 Sum_probs=93.3
Q ss_pred CCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHH
Q 022233 107 RGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAK 186 (300)
Q Consensus 107 ~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~ 186 (300)
..|.+.|.. -..+|-.+++-+|+.+|-. |..|...+|.|+|.|..|-.+|+
T Consensus 264 ~~i~~FnDD---iQGTaaV~lAgll~Alr~~--------------------------g~~l~d~riv~~GAGsAgiGia~ 314 (559)
T PTZ00317 264 NKYRCFNDD---IQGTGAVIAAGFLNALKLS--------------------------GVPPEEQRIVFFGAGSAAIGVAN 314 (559)
T ss_pred cCCCEeccc---chhHHHHHHHHHHHHHHHh--------------------------CCChhhcEEEEECCCHHHHHHHH
Confidence 347777763 2356677777778776631 45588899999999999999999
Q ss_pred HHHh----CCC-------EEEEECCCC-----C-C-CC--------CC--cc---cCCHHHHhhcC--CEEEEecCCChh
Q 022233 187 RLDA----FGC-------SISYNSRTK-----K-P-SV--------SY--PF---YSNVCELAANC--DILIICCGLTAE 233 (300)
Q Consensus 187 ~l~~----~g~-------~V~~~~~~~-----~-~-~~--------~~--~~---~~~l~e~l~~a--DvV~l~~p~~~~ 233 (300)
.+.. .|. +++.+|+.. . . .. .. .. ..+|.|+++.. |+++=+- .
T Consensus 315 ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S----~ 390 (559)
T PTZ00317 315 NIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLS----G 390 (559)
T ss_pred HHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEec----C
Confidence 8873 677 677777542 1 1 00 00 11 35899999998 9887642 1
Q ss_pred hhhcchHHHHhcCCC---CcEEEEcCCCccc---CHHHHHHHHHhCCceEEEe
Q 022233 234 THHMINKQVLSALGK---EGVVINIGRGPII---DEQELVRCLVQGEIKGAGL 280 (300)
Q Consensus 234 t~~li~~~~l~~mk~---ga~lIn~srg~~v---d~~aL~~aL~~~~i~~a~L 280 (300)
..+.|+++.++.|.+ ..+|.=.|....- ..++.+++=+.+-|.+.|.
T Consensus 391 ~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGs 443 (559)
T PTZ00317 391 VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGS 443 (559)
T ss_pred CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECC
Confidence 236789999999984 8999999887643 3333333322333554443
No 475
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=92.26 E-value=1.3 Score=41.10 Aligned_cols=92 Identities=14% Similarity=0.257 Sum_probs=68.2
Q ss_pred cCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCC-C-------------C--CcccCCHHHHhhcCCEEEEecC
Q 022233 167 LGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPS-V-------------S--YPFYSNVCELAANCDILIICCG 229 (300)
Q Consensus 167 l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~-~-------------~--~~~~~~l~e~l~~aDvV~l~~p 229 (300)
|.|+|+..+|=| +|+.++......+||+|.+..+..-.. . + .....+++++++.||||..=+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 889999999987 688888888899999998776543211 0 1 2335689999999999987655
Q ss_pred CC--hhhh-----------hcchHHHHhcCCCCcEEEEcC---CC
Q 022233 230 LT--AETH-----------HMINKQVLSALGKEGVVINIG---RG 258 (300)
Q Consensus 230 ~~--~~t~-----------~li~~~~l~~mk~ga~lIn~s---rg 258 (300)
.+ ++.+ --+|.++++.-+++++|.-|- ||
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG 275 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRG 275 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCCCCCCC
Confidence 33 2221 346788888889999999883 65
No 476
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.21 E-value=0.25 Score=48.07 Aligned_cols=105 Identities=18% Similarity=0.113 Sum_probs=64.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CCccc--CCHHHHhhcCCEEEEecCCChhhhh--
Q 022233 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SYPFY--SNVCELAANCDILIICCGLTAETHH-- 236 (300)
Q Consensus 167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~~~~--~~l~e~l~~aDvV~l~~p~~~~t~~-- 236 (300)
+.+++|.|+|+|..|.+.++.|+..|.+|.++|....... +.... ....+.+...|+|+.. |.-+....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHHH
Confidence 5688999999999999999999999999999996443210 11111 1122456678876664 32221111
Q ss_pred ---------cchH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233 237 ---------MINK-QVLSA-LGKEGVVINIGRGPIIDEQELVRCLVQ 272 (300)
Q Consensus 237 ---------li~~-~~l~~-mk~ga~lIn~srg~~vd~~aL~~aL~~ 272 (300)
++.+ +++.. ++...+-|-=+.|.---..-|...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 33333 233344455567777777777777765
No 477
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=92.20 E-value=0.35 Score=43.49 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=41.1
Q ss_pred EEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCCC-----Ccc--cCCHHHHhhcCCEEEEecC
Q 022233 173 GIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSVS-----YPF--YSNVCELAANCDILIICCG 229 (300)
Q Consensus 173 gIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~-----~~~--~~~l~e~l~~aDvV~l~~p 229 (300)
.|.| .|.||+.+++.|...|++|++.+|+...... ... .....+.+.++|+|+.+..
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 4565 6999999999999999999999887654321 000 1244567788999887764
No 478
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=92.16 E-value=2.7 Score=42.38 Aligned_cols=138 Identities=19% Similarity=0.214 Sum_probs=90.3
Q ss_pred CeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHH
Q 022233 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKR 187 (300)
Q Consensus 108 gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~ 187 (300)
.|.+.|.. -..+|-.+++-+|+.+|-. |..|...+|.|+|.|..|-.+|+.
T Consensus 289 ~i~~FnDD---iQGTaaV~lAgll~A~r~~--------------------------g~~l~d~riv~~GAGsAgigia~l 339 (581)
T PLN03129 289 THLCFNDD---IQGTAAVALAGLLAALRAT--------------------------GGDLADQRILFAGAGEAGTGIAEL 339 (581)
T ss_pred CCCEeccc---cchHHHHHHHHHHHHHHHh--------------------------CCchhhceEEEECCCHHHHHHHHH
Confidence 45555553 2345666677677666521 455888999999999999999999
Q ss_pred HHh-----CCC-------EEEEECCCCC-----CC-C---------CCcccCCHHHHhhc--CCEEEEecCCChhhhhcc
Q 022233 188 LDA-----FGC-------SISYNSRTKK-----PS-V---------SYPFYSNVCELAAN--CDILIICCGLTAETHHMI 238 (300)
Q Consensus 188 l~~-----~g~-------~V~~~~~~~~-----~~-~---------~~~~~~~l~e~l~~--aDvV~l~~p~~~~t~~li 238 (300)
+.. .|. +++.+|+..- .. . ......+|.|+++. .|+++=.- ..-++|
T Consensus 340 l~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~F 415 (581)
T PLN03129 340 IALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTF 415 (581)
T ss_pred HHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCC
Confidence 886 466 6777776421 10 1 11123589999999 89887652 123678
Q ss_pred hHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHhCC-ceEEE
Q 022233 239 NKQVLSALG---KEGVVINIGRGPI---IDEQELVRCLVQGE-IKGAG 279 (300)
Q Consensus 239 ~~~~l~~mk---~ga~lIn~srg~~---vd~~aL~~aL~~~~-i~~a~ 279 (300)
+++.++.|. +..+|.=.|...- ...++.+++ .+|+ |.+.|
T Consensus 416 t~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~AtG 462 (581)
T PLN03129 416 TKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFASG 462 (581)
T ss_pred CHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEEeC
Confidence 999999995 7889998887652 233333333 3455 54443
No 479
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.16 E-value=0.32 Score=42.84 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=32.6
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK 202 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~ 202 (300)
+.||++.|.|. |.||+.+|+.|...|++|+..+|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 67999999997 7999999999999999999888754
No 480
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.14 E-value=0.43 Score=44.66 Aligned_cols=84 Identities=19% Similarity=0.337 Sum_probs=53.9
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc---c-C----CHHHHhh------cCC----EEE
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF---Y-S----NVCELAA------NCD----ILI 225 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~---~-~----~l~e~l~------~aD----vV~ 225 (300)
|.+|.|+|.|.||..+++.++..|.+|++.+++++.. .++.. . . ++.+.+. ..| +|+
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~ 246 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIF 246 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEE
Confidence 7899999999999999999999999998887754321 12110 0 0 1222222 233 666
Q ss_pred EecCCChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233 226 ICCGLTAETHHMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 226 l~~p~~~~t~~li~~~~l~~mk~ga~lIn~sr 257 (300)
-+...... ....++.+++|..++.++.
T Consensus 247 d~~g~~~~-----~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 247 ECSGSKPG-----QESALSLLSHGGTLVVVGY 273 (349)
T ss_pred ECCCChHH-----HHHHHHHHhcCCeEEEECc
Confidence 66543221 1335667888888888764
No 481
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.13 E-value=0.56 Score=41.59 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=33.0
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK 202 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~ 202 (300)
+.|+++.|+|. |.||+.+++.+...|++|.+.+++.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 67999999999 9999999999999999999888764
No 482
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=92.11 E-value=0.33 Score=45.18 Aligned_cols=62 Identities=19% Similarity=0.132 Sum_probs=44.0
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCC--CEEEEECCCCCCC---------CCC-------cccCCHHHHhhcCCEEEEe
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFG--CSISYNSRTKKPS---------VSY-------PFYSNVCELAANCDILIIC 227 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g--~~V~~~~~~~~~~---------~~~-------~~~~~l~e~l~~aDvV~l~ 227 (300)
+.|++|.|.|. |.||+.+++.|.+.| .+|.+++++.... ... ....++.+++++.|+|+.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 46899999996 999999999999876 6888887654321 011 1123456678889988865
Q ss_pred c
Q 022233 228 C 228 (300)
Q Consensus 228 ~ 228 (300)
.
T Consensus 82 A 82 (324)
T TIGR03589 82 A 82 (324)
T ss_pred c
Confidence 4
No 483
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=92.04 E-value=0.25 Score=47.85 Aligned_cols=64 Identities=27% Similarity=0.364 Sum_probs=46.7
Q ss_pred cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--------CC-------cccCCHHHHhhcCCEEEEec
Q 022233 165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--------SY-------PFYSNVCELAANCDILIICC 228 (300)
Q Consensus 165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~~-------~~~~~l~e~l~~aDvV~l~~ 228 (300)
..++||++.|.|. |.||+++|+.|...|++|...+++.+... .. ....++.+.+.+.|+++.+.
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 3578999999997 89999999999999999988877543210 00 11123455678899998765
No 484
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=92.02 E-value=0.57 Score=43.18 Aligned_cols=62 Identities=24% Similarity=0.265 Sum_probs=44.7
Q ss_pred CCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC---------C-----------CCcccCCHHHHhhcCCEEEE
Q 022233 168 GGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS---------V-----------SYPFYSNVCELAANCDILII 226 (300)
Q Consensus 168 ~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~-----------~~~~~~~l~e~l~~aDvV~l 226 (300)
.|++|.|.| .|.||+.+++.|...|++|.+..|+.... . ......+++++++.+|+|+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 478999999 69999999999999999998655443210 0 01112356778888998887
Q ss_pred ecC
Q 022233 227 CCG 229 (300)
Q Consensus 227 ~~p 229 (300)
+..
T Consensus 84 ~A~ 86 (322)
T PLN02986 84 TAS 86 (322)
T ss_pred eCC
Confidence 664
No 485
>PRK08628 short chain dehydrogenase; Provisional
Probab=92.02 E-value=0.34 Score=42.92 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=33.1
Q ss_pred ccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 166 KLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 166 ~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
++.|+++.|.| .|.||+.+|+.|...|++|.+.+++..
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence 57899999999 578999999999999999988877643
No 486
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.00 E-value=0.83 Score=42.60 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=33.9
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCC
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKP 204 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~ 204 (300)
.|.+++|+|+|.+|.+++.-+++.|. +|++.|.++++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K 229 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK 229 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence 48999999999999999999999998 89999988764
No 487
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=91.99 E-value=0.17 Score=42.16 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=24.1
Q ss_pred EEEEEecChhHHHHHHHHHh-CCCEEEEEC
Q 022233 171 RVGIVGLGSIGSLVAKRLDA-FGCSISYNS 199 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~-~g~~V~~~~ 199 (300)
+|||-|||+||+.+++.+.. -.++|...+
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaIn 31 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAIN 31 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEe
Confidence 79999999999999999983 456776553
No 488
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=91.98 E-value=0.2 Score=48.48 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=26.4
Q ss_pred CEEEEEecChhHHHHHHHHHh-CCCEEEE-ECC
Q 022233 170 KRVGIVGLGSIGSLVAKRLDA-FGCSISY-NSR 200 (300)
Q Consensus 170 ~~vgIiG~G~IG~~~A~~l~~-~g~~V~~-~~~ 200 (300)
.+|||.|||+||+.+++.+.. ++++|.. .|+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp 118 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP 118 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence 499999999999999999875 7899876 453
No 489
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.98 E-value=0.49 Score=42.12 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=32.0
Q ss_pred cCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCC
Q 022233 167 LGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRT 201 (300)
Q Consensus 167 l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~ 201 (300)
+.||++.|.|.+ .||+++|+.|...|++|+..+|+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 789999999986 79999999999999999888775
No 490
>PRK05717 oxidoreductase; Validated
Probab=91.97 E-value=0.41 Score=42.50 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=33.0
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233 166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK 202 (300)
Q Consensus 166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~ 202 (300)
.+.||++.|.|. |.||+.+|+.|...|++|...+++.
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 478999999996 8999999999999999999887754
No 491
>PRK06182 short chain dehydrogenase; Validated
Probab=91.96 E-value=2.1 Score=38.34 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=31.5
Q ss_pred CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
.++++.|.|. |.||+.+|+.|...|++|+..+|+.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4789999995 89999999999999999998887643
No 492
>PRK08862 short chain dehydrogenase; Provisional
Probab=91.94 E-value=0.23 Score=43.81 Aligned_cols=38 Identities=13% Similarity=0.312 Sum_probs=33.5
Q ss_pred ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCC
Q 022233 166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
+++|+++.|.|.+. ||+++|+.|...|++|...+|+..
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 36789999999876 999999999999999999888653
No 493
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=91.93 E-value=0.57 Score=45.75 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=27.4
Q ss_pred EEEEEecChhHHHHHHHHHhCCC------EEEEECCC
Q 022233 171 RVGIVGLGSIGSLVAKRLDAFGC------SISYNSRT 201 (300)
Q Consensus 171 ~vgIiG~G~IG~~~A~~l~~~g~------~V~~~~~~ 201 (300)
+|.|||.|.+|..+++.|...|. +++++|..
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCC
Confidence 58899999999999999999887 78888754
No 494
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=91.93 E-value=0.86 Score=41.90 Aligned_cols=83 Identities=20% Similarity=0.365 Sum_probs=55.2
Q ss_pred CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc---c---CCHHHHhhcCCEEEEecCCChhhhhc
Q 022233 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF---Y---SNVCELAANCDILIICCGLTAETHHM 237 (300)
Q Consensus 169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~---~---~~l~e~l~~aDvV~l~~p~~~~t~~l 237 (300)
|.+|.|+|.|.+|+.+++.++.+|.+|++.+++.+.. .+... . ..........|+++-++....
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~----- 237 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA----- 237 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH-----
Confidence 6799999999999999999999999998887665321 01110 0 011111235788887764322
Q ss_pred chHHHHhcCCCCcEEEEcC
Q 022233 238 INKQVLSALGKEGVVINIG 256 (300)
Q Consensus 238 i~~~~l~~mk~ga~lIn~s 256 (300)
...+.+..|+++..+|+++
T Consensus 238 ~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 238 AAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred HHHHHHHhcccCCEEEEEC
Confidence 2345677888888888875
No 495
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=91.91 E-value=0.51 Score=50.77 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=53.2
Q ss_pred ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------------------CC--------ccc
Q 022233 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------------------SY--------PFY 211 (300)
Q Consensus 166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------------------~~--------~~~ 211 (300)
.-+|++|+|||-|.-|-+.|..|-..|+.|++|.|+.+..- +. ...
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence 35799999999999999999999999999999988765310 11 113
Q ss_pred CCHHHHhhcCCEEEEecCCC
Q 022233 212 SNVCELAANCDILIICCGLT 231 (300)
Q Consensus 212 ~~l~e~l~~aDvV~l~~p~~ 231 (300)
.+++++.+.-|.|++++-.|
T Consensus 1862 vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 VSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred ccHHHHhhccCeEEEEeCCC
Confidence 58999999999999987544
No 496
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=91.91 E-value=0.5 Score=44.55 Aligned_cols=85 Identities=28% Similarity=0.332 Sum_probs=56.2
Q ss_pred CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCcc---cC---CHHHHhhcCCEEEEecCCChhhh
Q 022233 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPF---YS---NVCELAANCDILIICCGLTAETH 235 (300)
Q Consensus 168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~---~~---~l~e~l~~aDvV~l~~p~~~~t~ 235 (300)
.|.++.|.|.|.+|..+++.++..|.+|++.+++.+. ..++.. .. .+.+.....|+++-++.....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 4779999999999999999999999988776654321 112211 11 122333457999888763222
Q ss_pred hcchHHHHhcCCCCcEEEEcCC
Q 022233 236 HMINKQVLSALGKEGVVINIGR 257 (300)
Q Consensus 236 ~li~~~~l~~mk~ga~lIn~sr 257 (300)
....+..++++..++.++.
T Consensus 258 ---~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 ---LEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---HHHHHHHhccCCEEEEECC
Confidence 1345667888888888763
No 497
>PRK07890 short chain dehydrogenase; Provisional
Probab=91.90 E-value=0.91 Score=40.06 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=32.5
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233 167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK 202 (300)
Q Consensus 167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~ 202 (300)
+.++++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 56899999996 7999999999999999999988864
No 498
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=91.89 E-value=0.62 Score=44.96 Aligned_cols=91 Identities=11% Similarity=0.138 Sum_probs=63.7
Q ss_pred ccCCCEEEEEec-----C---hhHHHHHHHHHhCCCEEEEECCCCC-C--C-----------CC--CcccCCHHHHhhcC
Q 022233 166 KLGGKRVGIVGL-----G---SIGSLVAKRLDAFGCSISYNSRTKK-P--S-----------VS--YPFYSNVCELAANC 221 (300)
Q Consensus 166 ~l~g~~vgIiG~-----G---~IG~~~A~~l~~~g~~V~~~~~~~~-~--~-----------~~--~~~~~~l~e~l~~a 221 (300)
.+.|++|+|+|- | ++.++++..+..+|++|.+..+..- . . .+ .....++++++++|
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 378999999985 5 5668999999999999988776421 1 0 01 22357899999999
Q ss_pred CEEEEecCC--------------Ch-----------------hhhhcchHHHHhcCCCC-cEEEEcC
Q 022233 222 DILIICCGL--------------TA-----------------ETHHMINKQVLSALGKE-GVVINIG 256 (300)
Q Consensus 222 DvV~l~~p~--------------~~-----------------~t~~li~~~~l~~mk~g-a~lIn~s 256 (300)
|+|..-.=. .+ -..--++++.++..+++ ++|.-+.
T Consensus 264 DvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcL 330 (395)
T PRK07200 264 DIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCL 330 (395)
T ss_pred CEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCC
Confidence 999885310 00 01123577788888885 8888774
No 499
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.86 E-value=0.86 Score=39.48 Aligned_cols=38 Identities=34% Similarity=0.447 Sum_probs=33.8
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233 166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK 203 (300)
Q Consensus 166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~ 203 (300)
.+.|+++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 377999999986 99999999999999999999988654
No 500
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.73 E-value=0.24 Score=45.23 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=32.3
Q ss_pred cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT 201 (300)
Q Consensus 165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~ 201 (300)
..|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35899999999999999999999999995 78777643
Done!