BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022234
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48721|HEM4_ARATH Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis
thaliana GN=UROS PE=2 SV=2
Length = 321
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/247 (72%), Positives = 209/247 (84%)
Query: 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110
P+VVVTRERGKN ++IKAL K+ I LELPLIQHA+GPD DRL+SVLND FDWIIITSP
Sbjct: 65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLNDKSFDWIIITSP 124
Query: 111 EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 170
EAGSVFLEAWK A +P V+IGVVGAGTA +FEE ++S+ L VAF+PSKATGK+LASEL
Sbjct: 125 EAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASEL 184
Query: 171 PKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPV 230
P+ K+ +VLYPAS KA N+I EGLS RGFEVVRLNTYTT PV VD +L+QALS PV
Sbjct: 185 PEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAPV 244
Query: 231 VAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 290
++VASPSAVR+W++LI + EQWSN VACIGETTASAA+RLGLKNVYYP PGLEGWV+SI
Sbjct: 245 LSVASPSAVRAWLHLIQNEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEGWVESI 304
Query: 291 LEALREH 297
+EAL H
Sbjct: 305 MEALGAH 311
>sp|Q10QR9|HEM4_ORYSJ Uroporphyrinogen-III synthase, chloroplastic OS=Oryza sativa subsp.
japonica GN=UROS PE=2 SV=1
Length = 302
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/256 (68%), Positives = 202/256 (78%)
Query: 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFD 103
A +S P VVVTRERGKN KLI AL KH + LELPLI+H +GPDTDRLS+VL D FD
Sbjct: 40 ACSSPPPPDVVVTRERGKNAKLIAALEKHNVQSLELPLIKHVEGPDTDRLSAVLRDEKFD 99
Query: 104 WIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATG 163
WI ITSPEA +VFLE WK AG P VRI VVGAGT +F+EVIQ + SL+VAFSPSKA G
Sbjct: 100 WITITSPEAAAVFLEGWKAAGNPKVRIAVVGAGTERVFDEVIQYNDGSLEVAFSPSKAMG 159
Query: 164 KILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK 223
K LASELP+ + C VLYPASAKA +EI+ GLSNRGFEV RLNTYTT V VD +LK
Sbjct: 160 KFLASELPRTTETTCKVLYPASAKAGHEIQNGLSNRGFEVTRLNTYTTVSVQDVDPLILK 219
Query: 224 QALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGL 283
ALS PVVAVASPSA+R+W+NL S + W N++ACIGETTASAAK+ GLK++YYPT PGL
Sbjct: 220 PALSAPVVAVASPSALRAWLNLASQVDNWGNAIACIGETTASAAKKFGLKSIYYPTTPGL 279
Query: 284 EGWVDSILEALREHGH 299
+GWV+SILEALR HG
Sbjct: 280 DGWVESILEALRAHGQ 295
>sp|Q59294|HEM4_CLOJO Porphyrin biosynthesis protein HemD OS=Clostridium josui GN=hemD
PE=3 SV=1
Length = 504
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 19/255 (7%)
Query: 52 KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRL-SSVLNDTIFDWIIITSP 110
K++VTR + +G L++ L + + +E P I+ P ++L + N + WI++TS
Sbjct: 255 KILVTRPKESSGTLVEKLRQLGAEPVEYPCIEVVPIPQNEKLYHACENIREYGWILLTSK 314
Query: 111 EAGSVFLEAWKEAGT-----PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKI 165
+F + G N +IG VG+ TA +EV L F+P G+
Sbjct: 315 NGIQIFFDYLNSKGLDARVLANTKIGTVGSQTAKALKEV------GLISDFTPEIFDGRH 368
Query: 166 LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA 225
LA + + + VL +A AS++I L + + R+ Y T ++ V K
Sbjct: 369 LALGIAERVGENEKVLICDAAIASDDIVNILRSNNIKFDRVPLYNTNYINENSNKVKKSI 428
Query: 226 L--SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGL 283
+ + + S S V ++ + D S + CIG TA AAK+ L+ V
Sbjct: 429 VHGELKYITFTSASTVEGFIASMKDIPLESLTAVCIGNKTAEAAKKYNLRYVVAE----- 483
Query: 284 EGWVDSILEALREHG 298
+ +DS+++ L E G
Sbjct: 484 KSTIDSMIDKLLEIG 498
>sp|Q8KCJ3|HEM4_CHLTE Uroporphyrinogen-III synthase OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=hemD PE=3 SV=1
Length = 246
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 20/238 (8%)
Query: 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA 112
V+VTR + + ++ LA++ +D + P I+ P T SV + T F I TSP +
Sbjct: 4 VLVTRPKHQAEPFVRELAQYGLDSVVFPTIEIR--PVTGW--SVPDLTRFAGIFFTSPNS 59
Query: 113 GSVFLEAWKEAG---TPNV---RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKIL 166
FLE E PN+ R+ VG T E K + + P A L
Sbjct: 60 VQFFLERLLEESPDELPNLQQARVWAVGKTTGGDLE------KHGVSIEPLPKSADAVSL 113
Query: 167 ASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY-TTEPVHHVDQTV--LK 223
S + + + T L+ + + I E ++ RG V L Y +P Q + L
Sbjct: 114 MSGIDASEIEGKTFLFVRGSLSLGTIPEVIAKRGGICVELTVYDNIQPSLEETQKIKSLL 173
Query: 224 QALSIPVVAVASPSAVRSWVNLISDTEQWSNS-VACIGETTASAAKRLGLKNVYYPTH 280
I ++ SPS ++ I E S+ +A IG TT+SA ++LG+K P +
Sbjct: 174 TEGKIDCLSFTSPSTAINFFEAIDSKEVPSDVLIAAIGTTTSSALEKLGVKVDIIPEY 231
>sp|Q59335|HEM4_CHLP8 Uroporphyrinogen-III synthase OS=Chlorobaculum parvum (strain NCIB
8327) GN=hemD PE=3 SV=1
Length = 246
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 104/256 (40%), Gaps = 26/256 (10%)
Query: 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQ--HAQGPDTDRLSSVLNDTIFDWIIITSP 110
V+VTR + + ++ L ++ + + P I+ G + L T F I TSP
Sbjct: 4 VLVTRPKHQAAPFVRELEQYGLSTVVFPTIEIRPVAGWNVPDL------TKFAGIFFTSP 57
Query: 111 EAGSVFLEAWKEAGTPNV------RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGK 164
+ FL+ + + R+ VG T E K + + P A
Sbjct: 58 NSVQFFLKHLLQTAPDELKNLQQTRVWAVGKTTGQDLE------KHGVSIEPLPKIADAV 111
Query: 165 ILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ 224
L +++ K T L+ + + I E ++ G V L Y P D +K
Sbjct: 112 NLMADIDPAEIKGQTFLFVRGSLSLGTIPELIAEFGGTCVELTVYENLPPSLEDTQRVKD 171
Query: 225 ALS---IPVVAVASPSAVRSWVNLISDTEQWSNSV--ACIGETTASAAKRLGLKNVYYPT 279
L+ + ++ SPS +++ I E S+SV A IG TT+ A +++G+K P
Sbjct: 172 MLAEGKLDCLSFTSPSTAKNFFEAIGSKE-LSDSVQIAAIGTTTSGALEKMGIKVDIIPE 230
Query: 280 HPGLEGWVDSILEALR 295
+ + +I EAL+
Sbjct: 231 YFDGPSFAKAIAEALK 246
>sp|P49649|SECA_ODOSI Protein translocase subunit SecA OS=Odontella sinensis GN=secA PE=3
SV=1
Length = 888
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 214 VHHVDQTVLKQALSIPVVAVASPSAVRSWV-----------NLISDTEQWSNSVACIGET 262
V VD ++ +AL+ ++A + + V ++ N+ + ++ + SV +
Sbjct: 202 VDEVDSVLIDEALTPLIIANSVKTCVDKYIIASEITDYLELNVHFEIDEKNKSVLLTNQG 261
Query: 263 TASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGHF 300
T K LG++++Y P P W+ ++ A+R F
Sbjct: 262 TIQIEKILGVQDLYNPRDP----WIPYVINAIRASSLF 295
>sp|A6GX63|SECA_FLAPJ Protein translocase subunit SecA OS=Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511) GN=secA PE=3 SV=1
Length = 1116
Score = 31.2 bits (69), Expect = 8.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 222 LKQALSIPVVAVASP---SAVRSWVNLISDTEQWSNSVACIGE 261
K+ I V A A SA +S++NL+ DT W+NS + G+
Sbjct: 123 FKENKQITVTATAKDRELSATKSYINLVGDTAVWANSWSAAGK 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,747,456
Number of Sequences: 539616
Number of extensions: 4339126
Number of successful extensions: 10048
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10039
Number of HSP's gapped (non-prelim): 14
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)