Query 022234
Match_columns 300
No_of_seqs 194 out of 1412
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05752 uroporphyrinogen-III 100.0 2.8E-45 6.1E-50 328.7 28.4 241 48-294 1-251 (255)
2 PRK08811 uroporphyrinogen-III 100.0 4.5E-45 9.7E-50 328.6 27.3 248 43-299 11-265 (266)
3 PRK07239 bifunctional uroporph 100.0 3.4E-42 7.4E-47 325.5 29.7 245 44-296 5-278 (381)
4 COG1587 HemD Uroporphyrinogen- 100.0 4.5E-42 9.8E-47 306.7 27.9 238 50-296 1-247 (248)
5 PRK09189 uroporphyrinogen-III 100.0 1.1E-41 2.3E-46 302.9 26.2 232 51-292 1-239 (240)
6 PRK05928 hemD uroporphyrinogen 100.0 1.1E-40 2.4E-45 296.4 28.2 239 50-294 1-248 (249)
7 PF02602 HEM4: Uroporphyrinoge 100.0 2.5E-39 5.3E-44 285.4 18.0 218 63-288 1-231 (231)
8 PRK06975 bifunctional uroporph 100.0 4.7E-38 1E-42 313.8 28.6 241 49-296 2-268 (656)
9 cd06578 HemD Uroporphyrinogen- 100.0 9.1E-38 2E-42 275.4 27.3 230 53-290 1-239 (239)
10 PRK07168 bifunctional uroporph 100.0 1.6E-34 3.5E-39 277.7 19.0 213 25-274 234-457 (474)
11 KOG4132 Uroporphyrinogen III s 100.0 3.1E-33 6.6E-38 236.2 23.7 241 51-298 4-259 (260)
12 PRK05928 hemD uroporphyrinogen 99.6 1.5E-15 3.2E-20 134.8 12.8 120 48-173 123-247 (249)
13 cd06578 HemD Uroporphyrinogen- 99.6 1.4E-14 3E-19 127.5 13.9 118 47-170 119-239 (239)
14 PRK07239 bifunctional uroporph 99.5 1.3E-13 2.8E-18 130.6 14.3 122 46-174 138-276 (381)
15 PRK05752 uroporphyrinogen-III 99.5 2.9E-13 6.2E-18 121.4 12.6 121 48-174 128-251 (255)
16 PRK08811 uroporphyrinogen-III 99.5 4E-13 8.7E-18 121.1 12.7 114 176-289 17-131 (266)
17 PF02602 HEM4: Uroporphyrinoge 99.5 1E-13 2.2E-18 122.1 6.7 116 47-168 114-231 (231)
18 PRK09189 uroporphyrinogen-III 99.4 1.4E-12 3.1E-17 115.8 12.8 118 48-171 116-238 (240)
19 PRK07168 bifunctional uroporph 99.4 2.4E-12 5.3E-17 124.5 14.8 229 48-289 78-364 (474)
20 COG1587 HemD Uroporphyrinogen- 99.4 1.9E-12 4E-17 115.7 12.3 118 50-173 123-244 (248)
21 PRK06975 bifunctional uroporph 99.3 2.3E-11 5.1E-16 122.3 14.1 119 176-294 2-134 (656)
22 KOG4132 Uroporphyrinogen III s 99.3 9.1E-11 2E-15 100.2 12.9 119 50-174 133-255 (260)
23 cd06298 PBP1_CcpA_like Ligand- 96.9 0.068 1.5E-06 47.0 15.6 178 64-262 20-215 (268)
24 cd01575 PBP1_GntR Ligand-bindi 96.8 0.044 9.6E-07 48.2 13.7 184 63-264 19-217 (268)
25 cd06272 PBP1_hexuronate_repres 96.7 0.038 8.3E-07 48.7 12.9 181 64-267 20-215 (261)
26 cd06295 PBP1_CelR Ligand bindi 96.7 0.074 1.6E-06 47.2 14.6 180 65-264 32-226 (275)
27 cd06299 PBP1_LacI_like_13 Liga 96.5 0.071 1.5E-06 46.9 13.3 178 64-262 20-213 (265)
28 cd06271 PBP1_AglR_RafR_like Li 96.4 0.076 1.6E-06 46.7 12.8 183 63-263 23-220 (268)
29 cd06273 PBP1_GntR_like_1 This 96.4 0.13 2.8E-06 45.3 14.0 180 63-263 19-217 (268)
30 cd06294 PBP1_ycjW_transcriptio 96.3 0.13 2.8E-06 45.3 13.4 183 63-263 24-222 (270)
31 cd01537 PBP1_Repressors_Sugar_ 96.2 0.066 1.4E-06 46.5 11.3 181 63-265 19-219 (264)
32 cd01542 PBP1_TreR_like Ligand- 96.2 0.11 2.3E-06 45.6 12.5 187 63-274 19-223 (259)
33 cd06309 PBP1_YtfQ_like Peripla 96.1 0.19 4.2E-06 44.5 14.0 219 63-295 19-258 (273)
34 cd06283 PBP1_RegR_EndR_KdgR_li 96.0 0.33 7.1E-06 42.6 14.8 181 63-263 19-217 (267)
35 cd06297 PBP1_LacI_like_12 Liga 96.0 0.23 5E-06 44.1 13.8 180 63-263 19-219 (269)
36 cd06310 PBP1_ABC_sugar_binding 95.9 0.23 5E-06 43.9 13.2 183 63-263 19-220 (273)
37 cd06289 PBP1_MalI_like Ligand- 95.8 0.71 1.5E-05 40.4 16.1 178 64-263 20-217 (268)
38 cd06286 PBP1_CcpB_like Ligand- 95.8 0.27 5.9E-06 43.0 13.2 181 63-263 19-214 (260)
39 COG1609 PurR Transcriptional r 95.8 0.14 3.1E-06 47.7 11.7 181 63-261 78-274 (333)
40 cd06284 PBP1_LacI_like_6 Ligan 95.8 0.51 1.1E-05 41.3 14.8 178 63-262 19-214 (267)
41 cd06288 PBP1_sucrose_transcrip 95.7 0.22 4.7E-06 43.8 12.4 177 64-262 21-215 (269)
42 cd06274 PBP1_FruR Ligand bindi 95.7 0.35 7.5E-06 42.5 13.6 179 64-263 20-217 (264)
43 cd06292 PBP1_LacI_like_10 Liga 95.7 0.22 4.8E-06 44.0 12.4 184 63-263 19-220 (273)
44 cd06270 PBP1_GalS_like Ligand 95.6 0.58 1.3E-05 41.2 14.8 179 63-262 19-215 (268)
45 cd06279 PBP1_LacI_like_3 Ligan 95.6 0.28 6E-06 43.9 12.7 178 63-263 24-234 (283)
46 PRK10423 transcriptional repre 95.6 0.51 1.1E-05 43.0 14.6 180 64-263 77-274 (327)
47 cd06296 PBP1_CatR_like Ligand- 95.5 0.25 5.4E-06 43.5 12.0 209 63-292 19-242 (270)
48 TIGR01481 ccpA catabolite cont 95.5 0.43 9.3E-06 43.6 13.9 179 64-263 80-275 (329)
49 cd06305 PBP1_methylthioribose_ 95.5 1 2.2E-05 39.7 15.6 187 63-269 19-228 (273)
50 PRK11303 DNA-binding transcrip 95.4 0.31 6.6E-06 44.6 12.6 176 64-262 82-276 (328)
51 cd01545 PBP1_SalR Ligand-bindi 95.4 0.49 1.1E-05 41.6 13.6 184 63-263 19-218 (270)
52 PRK02261 methylaspartate mutas 95.4 0.34 7.3E-06 39.2 11.1 113 177-296 3-136 (137)
53 cd06290 PBP1_LacI_like_9 Ligan 95.3 0.6 1.3E-05 41.0 13.8 178 64-263 20-215 (265)
54 cd06285 PBP1_LacI_like_7 Ligan 95.3 0.5 1.1E-05 41.5 13.2 177 63-262 19-213 (265)
55 cd06281 PBP1_LacI_like_5 Ligan 95.3 0.68 1.5E-05 40.9 13.9 177 63-262 19-214 (269)
56 cd06275 PBP1_PurR Ligand-bindi 95.2 1 2.2E-05 39.5 14.7 179 64-262 20-216 (269)
57 cd06320 PBP1_allose_binding Pe 95.1 0.34 7.5E-06 42.9 11.4 181 63-262 19-218 (275)
58 cd06300 PBP1_ABC_sugar_binding 95.1 0.97 2.1E-05 39.9 14.3 160 99-275 58-235 (272)
59 cd06267 PBP1_LacI_sugar_bindin 95.0 0.53 1.1E-05 40.8 12.4 177 64-262 20-215 (264)
60 cd06278 PBP1_LacI_like_2 Ligan 95.0 0.41 9E-06 41.9 11.7 180 64-263 20-214 (266)
61 PRK10014 DNA-binding transcrip 95.0 0.64 1.4E-05 42.7 13.3 179 65-264 86-292 (342)
62 cd01574 PBP1_LacI Ligand-bindi 95.0 0.69 1.5E-05 40.5 13.0 180 63-262 19-212 (264)
63 cd06301 PBP1_rhizopine_binding 94.9 0.6 1.3E-05 41.2 12.6 180 64-261 20-219 (272)
64 PRK10703 DNA-binding transcrip 94.9 0.55 1.2E-05 43.2 12.7 180 64-262 80-277 (341)
65 cd06282 PBP1_GntR_like_2 Ligan 94.8 0.8 1.7E-05 40.0 12.9 177 64-263 20-215 (266)
66 cd06313 PBP1_ABC_sugar_binding 94.7 0.58 1.3E-05 41.6 12.0 192 63-272 19-229 (272)
67 cd06280 PBP1_LacI_like_4 Ligan 94.7 0.37 8E-06 42.4 10.5 199 63-289 19-233 (263)
68 cd06277 PBP1_LacI_like_1 Ligan 94.7 0.79 1.7E-05 40.3 12.6 179 63-262 22-215 (268)
69 PF06506 PrpR_N: Propionate ca 94.6 1.9 4.1E-05 36.2 14.0 132 126-295 33-165 (176)
70 TIGR02853 spore_dpaA dipicolin 94.5 2.9 6.3E-05 38.1 16.1 210 50-278 1-262 (287)
71 cd06316 PBP1_ABC_sugar_binding 94.4 1.2 2.6E-05 40.0 13.4 221 64-295 20-258 (294)
72 cd06293 PBP1_LacI_like_11 Liga 94.3 1.7 3.7E-05 38.2 13.9 178 64-263 20-216 (269)
73 cd01541 PBP1_AraR Ligand-bindi 94.1 0.97 2.1E-05 39.9 12.0 177 64-262 20-221 (273)
74 cd06312 PBP1_ABC_sugar_binding 94.1 1 2.2E-05 39.8 12.1 215 63-296 20-256 (271)
75 cd06323 PBP1_ribose_binding Pe 93.8 3.7 8.1E-05 35.8 15.1 180 64-263 20-217 (268)
76 PF10087 DUF2325: Uncharacteri 93.8 1.2 2.5E-05 33.6 10.2 95 179-293 1-96 (97)
77 cd06314 PBP1_tmGBP Periplasmic 93.7 0.79 1.7E-05 40.5 10.6 182 63-264 18-217 (271)
78 TIGR00640 acid_CoA_mut_C methy 93.7 0.87 1.9E-05 36.6 9.7 101 188-295 18-128 (132)
79 TIGR01501 MthylAspMutase methy 93.7 2.3 4.9E-05 34.3 12.1 101 188-295 17-133 (134)
80 cd06291 PBP1_Qymf_like Ligand 93.5 2.1 4.5E-05 37.5 12.9 175 63-262 19-211 (265)
81 PF00532 Peripla_BP_1: Peripla 93.4 0.49 1.1E-05 42.8 8.7 170 63-250 21-203 (279)
82 TIGR00640 acid_CoA_mut_C methy 93.3 2.1 4.6E-05 34.4 11.4 111 50-172 2-125 (132)
83 cd06287 PBP1_LacI_like_8 Ligan 93.3 1.6 3.5E-05 38.8 12.0 171 63-258 27-212 (269)
84 cd06302 PBP1_LsrB_Quorum_Sensi 93.2 1.5 3.2E-05 39.6 11.8 190 63-269 19-230 (298)
85 PRK10653 D-ribose transporter 93.2 3.1 6.6E-05 37.4 13.8 191 49-262 25-242 (295)
86 cd01544 PBP1_GalR Ligand-bindi 93.2 3.4 7.4E-05 36.4 13.9 198 63-292 24-243 (270)
87 cd06318 PBP1_ABC_sugar_binding 93.2 4 8.6E-05 36.1 14.3 194 63-273 19-238 (282)
88 cd06307 PBP1_uncharacterized_s 93.2 4.6 0.0001 35.6 14.7 183 64-262 20-221 (275)
89 cd01536 PBP1_ABC_sugar_binding 93.1 3.6 7.8E-05 35.7 13.7 180 65-261 21-216 (267)
90 PRK09492 treR trehalose repres 92.9 4.9 0.00011 36.3 14.7 172 63-262 82-267 (315)
91 cd06354 PBP1_BmpA_PnrA_like Pe 92.9 3.5 7.5E-05 36.5 13.5 180 63-261 22-214 (265)
92 PRK02261 methylaspartate mutas 92.9 1.7 3.6E-05 35.2 10.2 113 49-173 2-133 (137)
93 TIGR02417 fruct_sucro_rep D-fr 92.9 3.5 7.7E-05 37.5 13.8 176 64-262 81-275 (327)
94 PF13407 Peripla_BP_4: Peripla 92.8 2 4.3E-05 37.5 11.7 191 63-273 18-231 (257)
95 cd02072 Glm_B12_BD B12 binding 92.6 2.8 6.1E-05 33.5 11.0 97 188-291 15-127 (128)
96 PRK10401 DNA-binding transcrip 92.6 2.9 6.3E-05 38.5 13.0 178 64-263 80-276 (346)
97 PRK10727 DNA-binding transcrip 92.5 3.5 7.6E-05 37.9 13.4 178 64-263 80-276 (343)
98 cd02072 Glm_B12_BD B12 binding 92.5 2.2 4.8E-05 34.1 10.3 98 62-171 16-127 (128)
99 COG2185 Sbm Methylmalonyl-CoA 92.5 1.9 4.1E-05 35.1 9.9 108 49-167 11-131 (143)
100 PRK09526 lacI lac repressor; R 91.8 3.3 7.2E-05 37.9 12.3 177 64-262 84-278 (342)
101 cd06276 PBP1_FucR_like Ligand- 91.8 2.2 4.8E-05 37.4 10.7 200 63-294 18-228 (247)
102 TIGR01501 MthylAspMutase methy 91.6 4.9 0.00011 32.4 11.4 110 51-172 2-130 (134)
103 cd01391 Periplasmic_Binding_Pr 91.6 4 8.6E-05 34.7 11.9 151 99-262 56-219 (269)
104 cd06303 PBP1_LuxPQ_Quorum_Sens 91.2 9.6 0.00021 33.8 14.4 197 63-269 20-235 (280)
105 cd06322 PBP1_ABC_sugar_binding 91.1 7.1 0.00015 34.1 13.3 180 63-262 19-214 (267)
106 cd06308 PBP1_sensor_kinase_lik 90.9 5.1 0.00011 35.2 12.1 179 64-262 20-218 (270)
107 cd06321 PBP1_ABC_sugar_binding 90.8 11 0.00023 33.1 15.1 153 99-267 55-223 (271)
108 cd06317 PBP1_ABC_sugar_binding 90.8 2.8 6E-05 36.8 10.3 181 64-262 21-223 (275)
109 cd06324 PBP1_ABC_sugar_binding 90.5 13 0.00028 33.5 15.2 200 64-274 21-254 (305)
110 COG4822 CbiK Cobalamin biosynt 90.0 4.6 9.9E-05 35.2 10.2 141 64-213 64-239 (265)
111 cd01538 PBP1_ABC_xylose_bindin 89.9 2.7 5.9E-05 37.6 9.6 179 63-263 19-227 (288)
112 PRK14987 gluconate operon tran 89.8 8.9 0.00019 34.9 13.2 177 64-262 84-277 (331)
113 PF04392 ABC_sub_bind: ABC tra 89.5 9.9 0.00021 34.5 13.0 188 62-261 17-219 (294)
114 cd02071 MM_CoA_mut_B12_BD meth 89.4 3.5 7.5E-05 32.4 8.7 96 189-291 16-121 (122)
115 PRK09701 D-allose transporter 89.2 4.1 8.9E-05 37.1 10.4 183 63-262 44-252 (311)
116 cd06306 PBP1_TorT-like TorT-li 89.1 5.4 0.00012 35.2 10.8 187 64-269 20-228 (268)
117 cd02067 B12-binding B12 bindin 89.1 4 8.6E-05 31.6 8.8 84 62-156 16-107 (119)
118 PRK06756 flavodoxin; Provision 88.8 5.2 0.00011 32.3 9.7 89 190-286 20-133 (148)
119 cd02071 MM_CoA_mut_B12_BD meth 88.4 5.2 0.00011 31.4 9.1 97 62-170 16-120 (122)
120 PRK08306 dipicolinate synthase 88.3 13 0.00029 34.0 13.0 210 49-278 1-263 (296)
121 cd01539 PBP1_GGBP Periplasmic 88.3 19 0.00041 32.4 15.9 184 64-261 20-241 (303)
122 cd06304 PBP1_BmpA_like Peripla 88.1 10 0.00023 33.2 12.0 181 64-262 22-211 (260)
123 cd06319 PBP1_ABC_sugar_binding 87.8 6.4 0.00014 34.6 10.4 182 63-261 19-220 (277)
124 PRK11041 DNA-binding transcrip 87.0 17 0.00036 32.6 12.9 180 63-263 55-252 (309)
125 PRK09496 trkA potassium transp 86.9 30 0.00065 33.2 19.9 217 51-280 1-263 (453)
126 PRK10339 DNA-binding transcrip 86.7 24 0.00053 32.0 14.7 170 64-262 88-272 (327)
127 TIGR02329 propionate_PrpR prop 86.6 36 0.00079 33.9 16.3 144 110-295 40-184 (526)
128 cd06311 PBP1_ABC_sugar_binding 86.3 22 0.00048 31.1 17.3 157 99-271 58-231 (274)
129 TIGR02955 TMAO_TorT TMAO reduc 85.9 14 0.00031 33.1 11.8 188 64-272 20-230 (295)
130 PRK15408 autoinducer 2-binding 85.9 7.4 0.00016 36.2 10.1 175 64-260 44-242 (336)
131 cd06341 PBP1_ABC_ligand_bindin 84.8 20 0.00044 32.7 12.4 138 99-250 65-212 (341)
132 COG2185 Sbm Methylmalonyl-CoA 84.5 13 0.00028 30.3 9.4 102 188-296 28-139 (143)
133 cd01543 PBP1_XylR Ligand-bindi 84.1 18 0.00039 31.6 11.4 175 63-262 18-209 (265)
134 TIGR02405 trehalos_R_Ecol treh 84.1 32 0.00069 31.0 13.3 172 63-262 79-264 (311)
135 cd01540 PBP1_arabinose_binding 83.6 13 0.00028 32.9 10.4 68 63-136 19-88 (289)
136 PLN02928 oxidoreductase family 83.2 17 0.00037 34.1 11.2 138 46-205 14-187 (347)
137 cd02070 corrinoid_protein_B12- 82.1 24 0.00052 30.2 10.9 91 50-145 82-183 (201)
138 PRK02910 light-independent pro 81.4 60 0.0013 32.2 16.8 143 60-211 175-328 (519)
139 PRK11790 D-3-phosphoglycerate 81.2 43 0.00093 32.2 13.3 173 46-239 6-215 (409)
140 cd01965 Nitrogenase_MoFe_beta_ 80.3 57 0.0012 31.4 15.3 142 61-208 170-330 (428)
141 PF04016 DUF364: Domain of unk 80.1 1 2.3E-05 36.8 1.6 107 176-292 10-130 (147)
142 TIGR02637 RhaS rhamnose ABC tr 79.4 27 0.00059 31.2 11.0 55 226-281 184-241 (302)
143 cd05564 PTS_IIB_chitobiose_lic 79.3 24 0.00052 26.4 9.0 75 179-262 1-80 (96)
144 cd01974 Nitrogenase_MoFe_beta 78.9 64 0.0014 31.1 14.9 140 62-209 176-335 (435)
145 PRK06703 flavodoxin; Provision 78.8 32 0.0007 27.6 10.6 75 191-274 21-116 (151)
146 PRK10537 voltage-gated potassi 78.7 29 0.00063 33.2 11.2 113 178-290 241-368 (393)
147 TIGR00853 pts-lac PTS system, 78.5 26 0.00055 26.3 9.8 76 178-263 4-85 (95)
148 PF13344 Hydrolase_6: Haloacid 78.3 22 0.00047 26.9 8.4 81 162-273 18-101 (101)
149 PRK06756 flavodoxin; Provision 78.0 9.6 0.00021 30.7 6.8 66 63-137 20-93 (148)
150 PRK10569 NAD(P)H-dependent FMN 77.8 11 0.00025 32.1 7.4 58 191-248 22-94 (191)
151 PRK09496 trkA potassium transp 77.7 21 0.00045 34.3 10.2 116 165-280 219-352 (453)
152 cd06325 PBP1_ABC_uncharacteriz 77.5 48 0.001 28.9 14.1 154 99-262 58-220 (281)
153 PF03358 FMN_red: NADPH-depend 77.5 6.8 0.00015 31.5 5.8 58 190-247 21-97 (152)
154 PRK08339 short chain dehydroge 76.7 49 0.0011 29.1 11.7 84 47-134 5-94 (263)
155 cd01979 Pchlide_reductase_N Pc 76.1 31 0.00067 32.9 10.7 203 51-274 156-366 (396)
156 TIGR03567 FMN_reduc_SsuE FMN r 75.7 14 0.0003 30.7 7.3 28 221-248 59-93 (171)
157 cd02067 B12-binding B12 bindin 75.4 22 0.00048 27.3 8.0 83 188-276 15-107 (119)
158 PRK15424 propionate catabolism 75.3 93 0.002 31.1 16.6 130 127-295 64-194 (538)
159 PRK00107 gidB 16S rRNA methylt 75.1 26 0.00055 29.8 8.8 54 162-215 123-176 (187)
160 PRK10669 putative cation:proto 75.0 34 0.00073 34.2 11.0 116 178-298 418-551 (558)
161 cd03785 GT1_MurG MurG is an N- 74.3 47 0.001 30.2 11.2 66 225-296 250-324 (350)
162 COG0826 Collagenase and relate 72.1 57 0.0012 30.7 11.1 68 226-293 91-159 (347)
163 PF02310 B12-binding: B12 bind 71.9 23 0.00049 27.1 7.3 70 62-136 17-90 (121)
164 PRK10537 voltage-gated potassi 71.4 32 0.00068 33.0 9.4 115 50-172 240-370 (393)
165 cd05565 PTS_IIB_lactose PTS_II 71.3 28 0.0006 26.5 7.3 75 179-263 2-82 (99)
166 PF06180 CbiK: Cobalt chelatas 70.5 6.5 0.00014 35.4 4.3 138 63-204 61-237 (262)
167 COG2014 Uncharacterized conser 70.5 56 0.0012 28.6 9.6 147 127-293 77-233 (250)
168 PRK01175 phosphoribosylformylg 70.4 39 0.00084 30.4 9.3 91 49-154 2-109 (261)
169 PRK15438 erythronate-4-phospha 70.0 44 0.00094 31.8 9.9 163 51-239 1-179 (378)
170 PRK09426 methylmalonyl-CoA mut 69.8 28 0.0006 36.1 9.1 101 188-295 598-708 (714)
171 PF00148 Oxidored_nitro: Nitro 69.7 90 0.002 29.4 12.2 227 47-294 141-394 (398)
172 TIGR00936 ahcY adenosylhomocys 69.7 1.1E+02 0.0024 29.5 14.6 35 45-79 27-62 (406)
173 PRK00726 murG undecaprenyldiph 69.6 85 0.0018 28.8 11.8 102 179-296 214-324 (357)
174 PF13458 Peripla_BP_6: Peripla 68.0 93 0.002 28.0 12.2 139 98-250 66-214 (343)
175 TIGR01753 flav_short flavodoxi 68.0 20 0.00044 28.0 6.4 63 63-135 17-88 (140)
176 cd06315 PBP1_ABC_sugar_binding 67.1 89 0.0019 27.5 14.1 191 64-267 21-232 (280)
177 PRK09590 celB cellobiose phosp 66.8 56 0.0012 25.0 9.1 94 178-293 2-103 (104)
178 PF03808 Glyco_tran_WecB: Glyc 66.4 59 0.0013 27.0 9.1 127 129-266 8-140 (172)
179 PRK10936 TMAO reductase system 66.0 91 0.002 28.7 11.2 202 50-272 46-277 (343)
180 TIGR03566 FMN_reduc_MsuE FMN r 65.5 23 0.00049 29.4 6.4 27 221-247 62-95 (174)
181 TIGR01285 nifN nitrogenase mol 65.0 1.2E+02 0.0025 29.4 12.0 145 60-211 181-345 (432)
182 PRK07765 para-aminobenzoate sy 64.3 41 0.00089 29.1 8.0 93 51-155 1-98 (214)
183 PRK06703 flavodoxin; Provision 64.3 22 0.00049 28.6 6.0 63 63-135 20-90 (151)
184 cd06326 PBP1_STKc_like Type I 63.8 1.1E+02 0.0024 27.5 13.3 148 100-260 67-224 (336)
185 COG4635 HemG Flavodoxin [Energ 63.7 20 0.00044 29.8 5.5 68 62-139 18-93 (175)
186 cd06167 LabA_like LabA_like pr 63.7 30 0.00065 27.6 6.7 82 61-144 53-142 (149)
187 TIGR02634 xylF D-xylose ABC tr 63.0 1.2E+02 0.0025 27.3 12.7 177 62-261 17-219 (302)
188 PF02571 CbiJ: Precorrin-6x re 63.0 1.1E+02 0.0024 27.2 11.3 198 51-277 1-225 (249)
189 COG1110 Reverse gyrase [DNA re 62.5 1.6E+02 0.0035 31.8 12.9 79 129-214 277-376 (1187)
190 PRK14719 bifunctional RNAse/5- 62.4 68 0.0015 30.3 9.6 80 117-204 14-99 (360)
191 PRK06849 hypothetical protein; 62.2 52 0.0011 31.1 9.0 89 49-139 3-112 (389)
192 cd01972 Nitrogenase_VnfE_like 61.4 1.6E+02 0.0034 28.4 17.6 224 60-295 179-422 (426)
193 PRK09426 methylmalonyl-CoA mut 61.4 64 0.0014 33.5 9.9 109 51-171 583-704 (714)
194 PF04127 DFP: DNA / pantothena 61.4 24 0.00052 30.0 5.8 33 48-80 1-50 (185)
195 PRK08250 glutamine amidotransf 61.3 54 0.0012 28.9 8.3 91 51-155 1-106 (235)
196 PRK05784 phosphoribosylamine-- 61.2 92 0.002 30.7 10.6 73 51-123 1-92 (486)
197 cd06341 PBP1_ABC_ligand_bindin 60.9 46 0.001 30.3 8.2 70 62-132 150-220 (341)
198 PRK05579 bifunctional phosphop 60.8 34 0.00074 32.8 7.4 34 46-79 184-234 (399)
199 PF03358 FMN_red: NADPH-depend 59.5 18 0.00038 29.1 4.6 70 63-133 21-112 (152)
200 cd01741 GATase1_1 Subgroup of 59.3 72 0.0016 26.6 8.5 86 53-144 4-98 (188)
201 PRK07308 flavodoxin; Validated 58.9 37 0.0008 27.2 6.4 75 52-136 5-91 (146)
202 PRK13982 bifunctional SbtC-lik 58.9 42 0.00091 33.0 7.7 35 46-80 252-303 (475)
203 PRK00257 erythronate-4-phospha 58.6 1.2E+02 0.0025 29.0 10.5 163 51-239 1-179 (381)
204 PRK06490 glutamine amidotransf 57.7 77 0.0017 28.0 8.7 93 50-156 7-109 (239)
205 TIGR01283 nifE nitrogenase mol 57.6 1.9E+02 0.0041 28.1 18.9 217 60-294 210-441 (456)
206 TIGR00288 conserved hypothetic 57.5 1.1E+02 0.0024 25.4 10.6 100 162-271 42-149 (160)
207 TIGR01133 murG undecaprenyldip 57.4 1.3E+02 0.0028 27.3 10.5 66 226-297 249-322 (348)
208 PRK10669 putative cation:proto 56.9 88 0.0019 31.2 9.9 114 51-172 418-549 (558)
209 TIGR02663 nifX nitrogen fixati 56.8 20 0.00043 28.0 4.3 42 258-299 71-112 (119)
210 PF13377 Peripla_BP_3: Peripla 56.5 24 0.00053 28.0 5.0 83 178-261 10-105 (160)
211 PRK09271 flavodoxin; Provision 55.9 57 0.0012 26.7 7.1 68 62-135 18-93 (160)
212 PF10087 DUF2325: Uncharacteri 55.8 82 0.0018 23.3 7.4 56 52-110 1-57 (97)
213 PRK15452 putative protease; Pr 55.7 2E+02 0.0044 28.0 11.8 64 227-290 89-153 (443)
214 PRK05569 flavodoxin; Provision 55.7 36 0.00079 26.9 5.8 37 99-135 46-91 (141)
215 COG0715 TauA ABC-type nitrate/ 55.2 36 0.00077 31.1 6.4 62 45-110 131-193 (335)
216 PRK07825 short chain dehydroge 55.2 1.5E+02 0.0031 26.0 12.6 80 48-134 3-87 (273)
217 TIGR03427 ABC_peri_uca ABC tra 54.7 20 0.00044 33.3 4.6 65 46-114 102-166 (328)
218 cd01968 Nitrogenase_NifE_I Nit 54.6 2E+02 0.0043 27.4 17.9 220 59-294 170-402 (410)
219 TIGR01729 taurine_ABC_bnd taur 54.5 39 0.00085 30.4 6.5 65 44-112 94-158 (300)
220 PRK10569 NAD(P)H-dependent FMN 54.5 68 0.0015 27.3 7.5 57 64-120 22-92 (191)
221 PRK07114 keto-hydroxyglutarate 54.2 1.5E+02 0.0033 26.0 9.7 143 51-202 16-183 (222)
222 cd01976 Nitrogenase_MoFe_alpha 54.0 2.1E+02 0.0046 27.5 18.2 215 60-295 185-417 (421)
223 PRK05452 anaerobic nitric oxid 54.0 2.3E+02 0.0049 27.9 12.1 95 189-286 269-382 (479)
224 cd06167 LabA_like LabA_like pr 53.9 98 0.0021 24.5 8.1 107 161-269 24-141 (149)
225 PRK14192 bifunctional 5,10-met 53.9 78 0.0017 28.8 8.2 146 65-236 54-211 (283)
226 cd03466 Nitrogenase_NifN_2 Nit 53.8 2.1E+02 0.0046 27.5 16.9 221 59-294 167-425 (429)
227 cd03129 GAT1_Peptidase_E_like 53.8 89 0.0019 26.7 8.3 65 176-244 28-97 (210)
228 PF03709 OKR_DC_1_N: Orn/Lys/A 53.7 1E+02 0.0022 23.8 8.1 67 62-137 6-77 (115)
229 PRK11480 tauA taurine transpor 53.5 33 0.00072 31.4 5.9 64 45-112 117-180 (320)
230 PRK06895 putative anthranilate 53.2 1.2E+02 0.0027 25.4 9.0 87 51-154 2-93 (190)
231 PRK02910 light-independent pro 53.1 22 0.00047 35.4 4.8 50 28-81 275-325 (519)
232 COG2984 ABC-type uncharacteriz 52.8 2E+02 0.0042 26.8 14.7 172 52-238 32-223 (322)
233 COG0426 FpaA Uncharacterized f 52.7 1.3E+02 0.0028 28.8 9.6 81 189-274 264-360 (388)
234 CHL00073 chlN photochlorophyll 52.5 2.4E+02 0.0051 27.7 12.4 202 52-274 195-412 (457)
235 TIGR02370 pyl_corrinoid methyl 52.4 1.3E+02 0.0028 25.6 9.0 104 164-271 69-186 (197)
236 TIGR01278 DPOR_BchB light-inde 52.4 18 0.00039 35.9 4.1 48 28-79 277-325 (511)
237 PF02882 THF_DHG_CYH_C: Tetrah 52.4 52 0.0011 27.3 6.2 73 155-237 14-89 (160)
238 PLN02516 methylenetetrahydrofo 52.3 1.1E+02 0.0023 28.3 8.8 153 66-237 61-220 (299)
239 cd05212 NAD_bind_m-THF_DH_Cycl 51.8 56 0.0012 26.4 6.2 89 162-263 11-103 (140)
240 PF13344 Hydrolase_6: Haloacid 51.7 25 0.00055 26.5 4.0 77 60-144 17-98 (101)
241 TIGR03590 PseG pseudaminic aci 51.6 1.8E+02 0.0039 26.1 20.0 71 50-123 31-102 (279)
242 PF02579 Nitro_FeMo-Co: Dinitr 51.2 25 0.00055 25.5 3.9 33 258-291 61-93 (94)
243 TIGR03590 PseG pseudaminic aci 51.1 70 0.0015 28.8 7.5 38 165-206 22-59 (279)
244 cd01080 NAD_bind_m-THF_DH_Cycl 51.1 76 0.0016 26.5 7.1 55 176-238 43-98 (168)
245 KOG4542 Predicted membrane pro 50.9 9.5 0.00021 28.0 1.4 42 13-60 3-44 (96)
246 PRK05234 mgsA methylglyoxal sy 50.9 39 0.00086 27.4 5.2 54 47-109 29-83 (142)
247 TIGR01282 nifD nitrogenase mol 50.9 2.5E+02 0.0054 27.5 17.0 215 60-293 220-450 (466)
248 cd00401 AdoHcyase S-adenosyl-L 50.5 2.4E+02 0.0052 27.2 13.6 36 44-79 30-66 (413)
249 PF11798 IMS_HHH: IMS family H 50.4 9.2 0.0002 22.6 1.1 32 236-272 1-32 (32)
250 COG0075 Serine-pyruvate aminot 50.4 22 0.00047 33.9 4.1 103 20-123 43-160 (383)
251 COG0499 SAM1 S-adenosylhomocys 50.3 2.3E+02 0.0051 27.0 13.8 150 44-208 39-240 (420)
252 TIGR03427 ABC_peri_uca ABC tra 50.0 2.1E+02 0.0047 26.5 11.5 140 64-240 25-166 (328)
253 PRK14188 bifunctional 5,10-met 49.9 2.1E+02 0.0045 26.3 13.0 52 236-287 139-199 (296)
254 smart00852 MoCF_biosynth Proba 49.7 28 0.0006 27.5 4.2 48 62-113 20-69 (135)
255 PRK04017 hypothetical protein; 49.7 66 0.0014 25.9 6.2 83 113-204 9-97 (132)
256 PRK00087 4-hydroxy-3-methylbut 49.6 2.8E+02 0.0061 28.4 12.3 213 50-297 30-278 (647)
257 cd01743 GATase1_Anthranilate_S 49.6 77 0.0017 26.4 7.1 87 54-155 3-93 (184)
258 PF02254 TrkA_N: TrkA-N domain 49.1 1.1E+02 0.0024 22.9 10.6 102 162-278 9-116 (116)
259 PRK08057 cobalt-precorrin-6x r 48.8 2E+02 0.0043 25.7 12.9 193 50-277 2-221 (248)
260 CHL00073 chlN photochlorophyll 48.6 58 0.0013 31.9 6.8 96 47-154 311-412 (457)
261 COG1184 GCD2 Translation initi 48.6 28 0.00062 32.0 4.4 29 52-80 147-177 (301)
262 cd01391 Periplasmic_Binding_Pr 48.4 95 0.0021 25.9 7.7 36 101-136 182-219 (269)
263 PF01136 Peptidase_U32: Peptid 48.4 90 0.002 27.0 7.6 66 226-291 14-80 (233)
264 PF00389 2-Hacid_dh: D-isomer 48.3 1.1E+02 0.0024 23.8 7.5 94 53-169 1-100 (133)
265 TIGR03675 arCOG00543 arCOG0054 48.1 2.2E+02 0.0048 29.1 11.2 42 160-201 573-616 (630)
266 COG1834 N-Dimethylarginine dim 47.9 2.1E+02 0.0046 25.8 10.0 143 44-207 71-249 (267)
267 PF04392 ABC_sub_bind: ABC tra 47.5 47 0.001 30.0 5.8 102 189-295 17-129 (294)
268 PRK12481 2-deoxy-D-gluconate 3 47.5 1.9E+02 0.0041 25.1 13.8 83 46-134 4-92 (251)
269 PF02310 B12-binding: B12 bind 47.5 60 0.0013 24.6 5.7 85 188-278 16-111 (121)
270 PLN02616 tetrahydrofolate dehy 47.4 1.4E+02 0.0031 28.2 9.0 72 155-236 209-283 (364)
271 PF09084 NMT1: NMT1/THI5 like; 47.3 17 0.00036 30.8 2.7 61 44-108 87-147 (216)
272 PRK07053 glutamine amidotransf 47.3 1.3E+02 0.0029 26.3 8.5 92 50-155 2-105 (234)
273 cd06268 PBP1_ABC_transporter_L 46.9 1.9E+02 0.0041 24.9 14.1 153 100-264 65-227 (298)
274 COG0647 NagD Predicted sugar p 46.7 52 0.0011 29.8 5.8 85 57-155 24-114 (269)
275 PF04321 RmlD_sub_bind: RmlD s 46.6 17 0.00036 32.9 2.7 59 51-110 1-60 (286)
276 PRK06395 phosphoribosylamine-- 46.5 89 0.0019 30.3 7.8 61 50-110 2-74 (435)
277 PF11731 Cdd1: Pathogenicity l 46.4 18 0.00039 27.2 2.4 39 257-295 18-56 (93)
278 COG0569 TrkA K+ transport syst 46.3 2E+02 0.0043 25.0 10.2 68 221-288 58-130 (225)
279 cd01079 NAD_bind_m-THF_DH NAD 46.0 1.3E+02 0.0028 26.0 7.7 32 175-206 60-92 (197)
280 TIGR00521 coaBC_dfp phosphopan 45.8 75 0.0016 30.4 7.0 35 46-80 181-232 (390)
281 COG2984 ABC-type uncharacteriz 45.8 1.3E+02 0.0027 28.0 8.1 60 189-248 48-109 (322)
282 TIGR00537 hemK_rel_arch HemK-r 45.7 54 0.0012 27.1 5.5 48 164-211 120-168 (179)
283 PRK13143 hisH imidazole glycer 45.7 1.2E+02 0.0025 25.8 7.7 77 51-142 1-85 (200)
284 PF02350 Epimerase_2: UDP-N-ac 45.2 2.6E+02 0.0056 26.0 11.4 217 51-296 69-318 (346)
285 PRK09739 hypothetical protein; 45.2 52 0.0011 27.9 5.4 58 190-247 24-106 (199)
286 PLN00016 RNA-binding protein; 45.1 2.6E+02 0.0057 26.0 10.8 89 44-134 46-164 (378)
287 PRK03619 phosphoribosylformylg 45.0 1.6E+02 0.0034 25.5 8.5 80 51-144 1-95 (219)
288 cd00316 Oxidoreductase_nitroge 45.0 2.7E+02 0.0058 26.1 18.3 228 49-295 151-396 (399)
289 PRK05569 flavodoxin; Provision 45.0 1.1E+02 0.0024 24.0 7.1 62 225-286 46-129 (141)
290 PF03853 YjeF_N: YjeF-related 44.8 40 0.00087 28.0 4.5 35 175-209 23-61 (169)
291 PRK03659 glutathione-regulated 44.8 2.7E+02 0.0059 28.2 11.2 101 178-280 401-519 (601)
292 cd01080 NAD_bind_m-THF_DH_Cycl 44.7 78 0.0017 26.4 6.2 58 46-112 40-98 (168)
293 PRK07206 hypothetical protein; 44.7 2.2E+02 0.0048 26.9 10.3 67 50-116 2-85 (416)
294 PRK11249 katE hydroperoxidase 44.5 2.6E+02 0.0056 29.3 11.0 123 175-299 595-740 (752)
295 PRK11107 hybrid sensory histid 44.5 4E+02 0.0086 27.9 21.9 224 46-296 532-787 (919)
296 PLN02572 UDP-sulfoquinovose sy 44.4 99 0.0022 29.9 7.8 38 42-79 39-77 (442)
297 cd06333 PBP1_ABC-type_HAAT_lik 44.3 2.3E+02 0.005 25.2 12.1 146 99-257 64-218 (312)
298 PRK12480 D-lactate dehydrogena 44.0 2.7E+02 0.0058 25.8 15.6 171 51-239 2-210 (330)
299 PRK10310 PTS system galactitol 44.0 1.3E+02 0.0027 22.4 6.7 26 178-203 3-34 (94)
300 PRK09922 UDP-D-galactose:(gluc 43.9 1.9E+02 0.0042 26.5 9.5 45 253-298 281-326 (359)
301 PRK05568 flavodoxin; Provision 43.9 69 0.0015 25.2 5.7 72 53-135 6-90 (142)
302 PRK05670 anthranilate synthase 43.7 1.9E+02 0.0042 24.1 8.8 84 57-155 7-94 (189)
303 cd00615 Orn_deC_like Ornithine 43.6 72 0.0016 28.7 6.4 62 48-111 97-164 (294)
304 TIGR02149 glgA_Coryne glycogen 43.5 2.6E+02 0.0057 25.6 13.1 21 99-119 142-162 (388)
305 PRK12767 carbamoyl phosphate s 43.0 1.8E+02 0.004 26.3 9.1 68 50-118 1-86 (326)
306 PRK07453 protochlorophyllide o 42.9 2.1E+02 0.0045 25.9 9.4 72 48-123 4-80 (322)
307 cd01398 RPI_A RPI_A: Ribose 5- 42.8 93 0.002 27.0 6.7 53 225-277 13-68 (213)
308 TIGR01737 FGAM_synth_I phospho 42.6 1.3E+02 0.0029 26.1 7.7 80 51-144 1-94 (227)
309 PRK02842 light-independent pro 42.6 3.2E+02 0.0069 26.3 16.2 205 51-274 167-381 (427)
310 cd03132 GATase1_catalase Type 42.5 1.7E+02 0.0036 23.0 8.6 70 227-298 62-142 (142)
311 PF12261 T_hemolysin: Thermost 42.4 40 0.00086 28.6 4.1 70 66-141 71-150 (179)
312 cd06350 PBP1_GPCR_family_C_lik 42.4 2.6E+02 0.0056 25.2 10.2 88 162-251 147-242 (348)
313 PRK00676 hemA glutamyl-tRNA re 42.4 67 0.0014 30.1 6.0 57 176-234 173-233 (338)
314 PLN02409 serine--glyoxylate am 42.4 73 0.0016 30.2 6.5 61 49-110 83-146 (401)
315 cd03786 GT1_UDP-GlcNAc_2-Epime 42.3 95 0.0021 28.4 7.1 179 101-297 141-338 (363)
316 PRK14191 bifunctional 5,10-met 42.2 2.7E+02 0.0059 25.4 10.4 146 65-236 52-209 (285)
317 PLN02409 serine--glyoxylate am 42.2 1.4E+02 0.0031 28.2 8.5 16 254-269 209-224 (401)
318 cd06346 PBP1_ABC_ligand_bindin 42.2 2.5E+02 0.0055 25.1 10.2 76 50-126 137-218 (312)
319 cd01980 Chlide_reductase_Y Chl 42.1 3.2E+02 0.0069 26.2 14.4 205 51-275 160-372 (416)
320 PLN02897 tetrahydrofolate dehy 41.9 2.2E+02 0.0047 26.8 9.2 67 162-236 197-266 (345)
321 KOG2882 p-Nitrophenyl phosphat 41.8 1.5E+02 0.0033 27.3 7.9 37 163-203 92-128 (306)
322 cd01740 GATase1_FGAR_AT Type 1 41.7 1.3E+02 0.0027 26.5 7.4 75 61-144 11-98 (238)
323 TIGR01459 HAD-SF-IIA-hyp4 HAD- 41.7 1.8E+02 0.0038 25.3 8.4 77 56-137 23-105 (242)
324 COG0647 NagD Predicted sugar p 41.5 1.2E+02 0.0026 27.5 7.3 40 231-274 73-113 (269)
325 PLN02605 monogalactosyldiacylg 41.5 3E+02 0.0065 25.7 14.9 170 99-296 148-347 (382)
326 cd06451 AGAT_like Alanine-glyo 41.5 77 0.0017 29.1 6.4 62 48-110 72-133 (356)
327 PF11360 DUF3110: Protein of u 41.5 54 0.0012 24.2 4.2 55 50-110 23-77 (86)
328 PRK05476 S-adenosyl-L-homocyst 41.2 3.4E+02 0.0074 26.3 17.0 35 44-78 42-77 (425)
329 cd00640 Trp-synth-beta_II Tryp 41.2 1.8E+02 0.0039 25.3 8.4 24 102-125 51-74 (244)
330 PRK06567 putative bifunctional 41.1 1.3E+02 0.0028 32.6 8.3 99 127-247 856-955 (1028)
331 cd06349 PBP1_ABC_ligand_bindin 41.0 2.3E+02 0.0051 25.6 9.5 105 163-271 122-234 (340)
332 cd06334 PBP1_ABC_ligand_bindin 41.0 2.4E+02 0.0053 26.0 9.7 81 50-132 140-226 (351)
333 COG0120 RpiA Ribose 5-phosphat 41.0 96 0.0021 27.3 6.3 49 226-274 19-69 (227)
334 COG0623 FabI Enoyl-[acyl-carri 40.9 1.9E+02 0.0042 25.8 8.1 135 47-185 3-145 (259)
335 cd01966 Nitrogenase_NifN_1 Nit 40.8 2.4E+02 0.0053 27.0 9.8 193 60-274 171-381 (417)
336 PRK03094 hypothetical protein; 40.6 48 0.0011 24.2 3.7 72 187-294 8-79 (80)
337 PRK05647 purN phosphoribosylgl 40.6 1.8E+02 0.0038 25.0 8.0 47 230-276 4-56 (200)
338 cd01422 MGS Methylglyoxal synt 40.5 64 0.0014 25.0 4.8 53 49-110 26-79 (115)
339 cd06320 PBP1_allose_binding Pe 40.4 1.4E+02 0.0031 25.8 7.7 74 63-136 142-218 (275)
340 PRK12779 putative bifunctional 40.4 5E+02 0.011 28.0 14.8 35 176-212 446-480 (944)
341 PF02887 PK_C: Pyruvate kinase 40.2 1.2E+02 0.0025 23.3 6.3 66 228-298 17-88 (117)
342 PF13685 Fe-ADH_2: Iron-contai 40.0 93 0.002 27.8 6.3 40 165-206 9-52 (250)
343 PLN03026 histidinol-phosphate 40.0 75 0.0016 29.8 6.1 61 49-112 126-186 (380)
344 COG0436 Aspartate/tyrosine/aro 39.9 1.4E+02 0.003 28.5 7.9 47 162-210 98-144 (393)
345 TIGR01140 L_thr_O3P_dcar L-thr 39.9 1.4E+02 0.0031 27.3 7.8 48 179-237 88-135 (330)
346 PRK08594 enoyl-(acyl carrier p 39.7 1.7E+02 0.0037 25.5 8.1 84 47-134 4-96 (257)
347 PRK03562 glutathione-regulated 39.7 3.3E+02 0.0072 27.7 11.0 115 178-294 401-534 (621)
348 PF05991 NYN_YacP: YacP-like N 39.6 50 0.0011 27.4 4.3 50 151-203 67-117 (166)
349 cd08187 BDH Butanol dehydrogen 39.3 90 0.0019 29.5 6.5 73 163-241 17-101 (382)
350 PRK01355 azoreductase; Reviewe 39.3 64 0.0014 27.4 5.1 55 192-246 26-103 (199)
351 PF01993 MTD: methylene-5,6,7, 39.3 21 0.00045 31.7 2.0 54 99-158 57-115 (276)
352 cd05212 NAD_bind_m-THF_DH_Cycl 39.2 55 0.0012 26.5 4.3 78 46-136 24-102 (140)
353 cd04509 PBP1_ABC_transporter_G 39.2 2.5E+02 0.0054 24.1 12.6 147 101-258 67-224 (299)
354 TIGR03567 FMN_reduc_SsuE FMN r 39.1 1E+02 0.0022 25.4 6.2 69 65-133 22-104 (171)
355 COG1497 Predicted transcriptio 39.1 67 0.0014 28.6 5.0 63 129-203 190-252 (260)
356 cd03146 GAT1_Peptidase_E Type 39.0 2.2E+02 0.0047 24.4 8.4 79 162-248 16-100 (212)
357 PRK15395 methyl-galactoside AB 39.0 3E+02 0.0066 25.0 17.2 166 99-273 79-272 (330)
358 PRK05565 fabG 3-ketoacyl-(acyl 38.8 1.6E+02 0.0034 25.0 7.6 86 47-135 2-93 (247)
359 PRK07097 gluconate 5-dehydroge 38.7 2.6E+02 0.0057 24.2 12.3 85 47-135 7-97 (265)
360 COG0224 AtpG F0F1-type ATP syn 38.7 1.7E+02 0.0037 26.8 7.9 67 227-293 72-153 (287)
361 PLN02891 IMP cyclohydrolase 38.7 3.6E+02 0.0079 27.0 10.5 130 103-248 25-179 (547)
362 COG1066 Sms Predicted ATP-depe 38.6 1E+02 0.0023 29.8 6.6 99 163-266 107-223 (456)
363 cd01121 Sms Sms (bacterial rad 38.5 1.8E+02 0.004 27.5 8.4 85 177-265 110-212 (372)
364 cd00615 Orn_deC_like Ornithine 38.5 2.6E+02 0.0056 25.0 9.2 9 177-185 99-107 (294)
365 TIGR02026 BchE magnesium-proto 38.1 1.7E+02 0.0038 28.7 8.5 74 61-137 24-102 (497)
366 cd01968 Nitrogenase_NifE_I Nit 38.0 1.2E+02 0.0026 28.9 7.3 34 46-79 283-316 (410)
367 COG1609 PurR Transcriptional r 38.0 3.3E+02 0.0071 25.1 12.8 62 137-207 80-144 (333)
368 CHL00076 chlB photochlorophyll 38.0 74 0.0016 31.6 5.9 48 28-79 287-335 (513)
369 PRK08105 flavodoxin; Provision 37.9 1.6E+02 0.0034 23.8 7.0 65 62-136 19-93 (149)
370 cd01979 Pchlide_reductase_N Pc 37.9 95 0.0021 29.5 6.5 95 46-154 272-366 (396)
371 PRK14187 bifunctional 5,10-met 37.8 2.4E+02 0.0053 25.9 8.7 127 65-208 53-192 (294)
372 PRK00170 azoreductase; Reviewe 37.6 44 0.00096 28.1 3.8 56 192-247 25-113 (201)
373 PRK04870 histidinol-phosphate 37.6 84 0.0018 29.0 6.0 61 49-112 104-164 (356)
374 PF02670 DXP_reductoisom: 1-de 37.5 23 0.00051 28.3 1.9 61 132-201 9-71 (129)
375 cd06342 PBP1_ABC_LIVBP_like Ty 37.5 3E+02 0.0065 24.6 9.6 105 163-271 122-234 (334)
376 PRK08306 dipicolinate synthase 37.2 3.2E+02 0.007 24.8 9.8 95 177-275 2-118 (296)
377 COG0436 Aspartate/tyrosine/aro 37.0 67 0.0015 30.6 5.3 73 48-123 111-195 (393)
378 PRK10307 putative glycosyl tra 36.9 3.6E+02 0.0077 25.2 14.7 175 99-296 169-373 (412)
379 COG2099 CobK Precorrin-6x redu 36.8 3.2E+02 0.0068 24.6 13.9 215 50-294 2-252 (257)
380 PRK06849 hypothetical protein; 36.8 3.6E+02 0.0078 25.3 11.0 47 226-274 75-131 (389)
381 TIGR01728 SsuA_fam ABC transpo 36.8 1.1E+02 0.0023 26.8 6.3 65 45-113 96-160 (288)
382 cd08551 Fe-ADH iron-containing 36.7 71 0.0015 30.0 5.4 73 163-240 11-94 (370)
383 cd03145 GAT1_cyanophycinase Ty 36.7 1.3E+02 0.0028 26.0 6.6 65 176-242 28-98 (217)
384 PRK14738 gmk guanylate kinase; 36.7 2.6E+02 0.0057 23.7 9.4 40 46-85 9-49 (206)
385 cd02070 corrinoid_protein_B12- 36.6 2.6E+02 0.0057 23.7 11.5 91 177-273 82-186 (201)
386 TIGR01284 alt_nitrog_alph nitr 36.4 4.1E+02 0.009 25.8 19.0 211 61-295 213-442 (457)
387 TIGR00035 asp_race aspartate r 36.3 92 0.002 27.1 5.7 44 227-273 75-118 (229)
388 TIGR01729 taurine_ABC_bnd taur 36.3 2.5E+02 0.0054 25.1 8.8 58 176-238 99-158 (300)
389 COG1366 SpoIIAA Anti-anti-sigm 36.2 67 0.0015 24.6 4.3 58 227-284 50-109 (117)
390 cd01537 PBP1_Repressors_Sugar_ 36.2 1.3E+02 0.0029 25.3 6.7 37 101-137 178-217 (264)
391 TIGR01278 DPOR_BchB light-inde 36.0 4.4E+02 0.0096 26.0 16.2 141 60-210 175-329 (511)
392 PLN02672 methionine S-methyltr 35.9 3.9E+02 0.0085 29.3 11.1 72 175-248 776-860 (1082)
393 COG1433 Uncharacterized conser 35.9 63 0.0014 25.5 4.0 32 259-291 74-105 (121)
394 COG2358 Imp TRAP-type uncharac 35.9 1.4E+02 0.0029 27.9 6.8 106 21-133 107-215 (321)
395 cd03820 GT1_amsD_like This fam 35.9 1.9E+02 0.004 25.2 7.8 107 179-297 211-320 (348)
396 PRK12742 oxidoreductase; Provi 35.8 2E+02 0.0043 24.3 7.7 32 47-78 3-35 (237)
397 cd06533 Glyco_transf_WecG_TagA 35.7 2.5E+02 0.0055 23.2 8.7 120 130-261 7-133 (171)
398 PRK14183 bifunctional 5,10-met 35.7 3.4E+02 0.0074 24.7 9.3 147 65-237 52-210 (281)
399 cd06289 PBP1_MalI_like Ligand- 35.6 2.7E+02 0.0058 23.8 8.6 75 63-137 137-217 (268)
400 PRK14166 bifunctional 5,10-met 35.6 3.4E+02 0.0074 24.7 9.3 147 65-236 51-209 (282)
401 TIGR01308 rpmD_bact ribosomal 35.6 58 0.0012 21.8 3.3 35 260-294 13-51 (55)
402 COG2247 LytB Putative cell wal 35.5 1.4E+02 0.0031 27.7 6.7 41 164-206 65-106 (337)
403 cd06375 PBP1_mGluR_groupII Lig 35.5 1.4E+02 0.0031 28.8 7.4 88 161-250 160-256 (458)
404 cd06282 PBP1_GntR_like_2 Ligan 35.5 93 0.002 26.7 5.7 72 63-136 137-214 (266)
405 PLN02240 UDP-glucose 4-epimera 35.5 1.6E+02 0.0035 26.8 7.5 32 48-79 3-35 (352)
406 PTZ00286 6-phospho-1-fructokin 35.5 2.1E+02 0.0045 28.1 8.4 127 161-299 163-305 (459)
407 COG3473 Maleate cis-trans isom 35.5 1.6E+02 0.0035 25.8 6.7 101 46-154 114-226 (238)
408 PLN02369 ribose-phosphate pyro 35.5 3.5E+02 0.0077 24.8 13.8 210 46-280 34-263 (302)
409 TIGR00021 rpiA ribose 5-phosph 35.4 1.4E+02 0.0031 26.0 6.6 50 225-274 13-65 (218)
410 PRK14476 nitrogenase molybdenu 35.4 4.3E+02 0.0093 25.7 15.6 192 60-274 182-392 (455)
411 PF03698 UPF0180: Uncharacteri 35.4 63 0.0014 23.6 3.7 73 186-294 7-79 (80)
412 COG2604 Uncharacterized protei 35.3 1.5E+02 0.0034 29.8 7.5 138 104-264 227-364 (594)
413 cd00853 NifX NifX belongs to a 35.3 60 0.0013 24.3 3.8 32 258-289 69-100 (102)
414 PLN02384 ribose-5-phosphate is 35.3 1.3E+02 0.0028 27.2 6.4 50 226-275 48-101 (264)
415 cd02065 B12-binding_like B12 b 35.0 2E+02 0.0043 21.7 7.9 71 63-138 17-91 (125)
416 PRK07206 hypothetical protein; 35.0 3.9E+02 0.0085 25.2 10.9 30 178-207 3-32 (416)
417 PRK05282 (alpha)-aspartyl dipe 34.9 2E+02 0.0043 25.4 7.5 75 164-248 18-99 (233)
418 PLN02778 3,5-epimerase/4-reduc 34.9 1.4E+02 0.0031 26.9 6.9 56 50-109 9-65 (298)
419 PRK05611 rpmD 50S ribosomal pr 34.6 68 0.0015 21.8 3.6 36 259-294 15-54 (59)
420 PRK08410 2-hydroxyacid dehydro 34.5 3.7E+02 0.008 24.7 12.1 65 176-240 144-209 (311)
421 cd06451 AGAT_like Alanine-glyo 34.3 2.7E+02 0.0059 25.4 8.9 13 256-268 196-208 (356)
422 PF02401 LYTB: LytB protein; 34.2 3.6E+02 0.0079 24.5 13.0 228 51-296 29-280 (281)
423 COG0075 Serine-pyruvate aminot 34.2 2.1E+02 0.0045 27.4 8.0 33 176-208 79-111 (383)
424 PRK01045 ispH 4-hydroxy-3-meth 34.2 3.7E+02 0.0081 24.7 13.2 215 50-298 30-283 (298)
425 PLN02494 adenosylhomocysteinas 34.1 4.7E+02 0.01 25.8 11.2 36 44-79 40-76 (477)
426 cd06340 PBP1_ABC_ligand_bindin 34.1 1.9E+02 0.0041 26.4 7.7 81 51-132 145-231 (347)
427 cd01658 Ribosomal_L30 Ribosoma 34.0 57 0.0012 21.7 3.1 36 259-294 12-51 (54)
428 PRK04870 histidinol-phosphate 33.9 3.7E+02 0.0081 24.6 10.0 12 131-142 84-95 (356)
429 COG0079 HisC Histidinol-phosph 33.9 1E+02 0.0022 29.0 5.9 58 50-112 99-156 (356)
430 TIGR01752 flav_long flavodoxin 33.7 2.7E+02 0.0057 22.8 8.7 14 160-173 10-23 (167)
431 PRK00147 queA S-adenosylmethio 33.7 2.7E+02 0.0059 26.2 8.5 86 178-270 174-264 (342)
432 PRK02610 histidinol-phosphate 33.6 1.1E+02 0.0024 28.5 6.1 61 49-111 114-178 (374)
433 TIGR01279 DPOR_bchN light-inde 33.6 1.3E+02 0.0029 28.7 6.7 95 46-154 270-364 (407)
434 TIGR01279 DPOR_bchN light-inde 33.2 3.1E+02 0.0066 26.2 9.1 203 51-274 154-364 (407)
435 PRK13978 ribose-5-phosphate is 33.1 1.5E+02 0.0032 26.2 6.3 50 226-275 20-72 (228)
436 KOG2914 Predicted haloacid-hal 33.1 2.5E+02 0.0054 24.6 7.7 160 105-279 21-197 (222)
437 cd08185 Fe-ADH1 Iron-containin 33.1 1.2E+02 0.0026 28.6 6.3 73 163-241 14-98 (380)
438 PRK13556 azoreductase; Provisi 32.9 1.2E+02 0.0025 26.0 5.7 24 225-248 87-117 (208)
439 cd06386 PBP1_NPR_C_like Ligand 32.8 4.2E+02 0.009 24.8 14.1 84 162-250 124-218 (387)
440 PRK07533 enoyl-(acyl carrier p 32.7 1.4E+02 0.0031 26.0 6.5 85 46-134 6-97 (258)
441 cd00578 L-fuc_L-ara-isomerases 32.7 2.1E+02 0.0045 27.7 8.0 142 60-211 23-199 (452)
442 cd03795 GT1_like_4 This family 32.7 2E+02 0.0044 25.6 7.6 124 162-297 205-333 (357)
443 PLN02653 GDP-mannose 4,6-dehyd 32.7 2E+02 0.0044 26.2 7.7 33 47-79 3-36 (340)
444 PRK00147 queA S-adenosylmethio 32.6 2.9E+02 0.0063 26.0 8.5 76 61-144 185-264 (342)
445 COG4747 ACT domain-containing 32.6 2.5E+02 0.0055 22.2 7.4 41 52-96 46-86 (142)
446 cd08178 AAD_C C-terminal alcoh 32.6 59 0.0013 31.0 4.1 61 177-240 21-92 (398)
447 PF00072 Response_reg: Respons 32.5 1.9E+02 0.0042 20.9 9.5 93 189-291 11-112 (112)
448 PRK14171 bifunctional 5,10-met 32.4 3.5E+02 0.0075 24.8 8.8 148 65-237 53-212 (288)
449 PF04273 DUF442: Putative phos 32.3 86 0.0019 24.2 4.3 34 50-83 28-67 (110)
450 PRK13566 anthranilate synthase 32.1 2.2E+02 0.0048 29.6 8.4 92 46-155 522-620 (720)
451 TIGR01860 VNFD nitrogenase van 32.0 4.9E+02 0.011 25.4 10.8 95 46-154 323-418 (461)
452 PRK12744 short chain dehydroge 31.9 3.3E+02 0.0071 23.5 8.6 88 46-134 4-98 (257)
453 PRK05294 carB carbamoyl phosph 31.9 6.1E+02 0.013 27.7 12.1 33 176-208 553-596 (1066)
454 PRK09288 purT phosphoribosylgl 31.8 4.3E+02 0.0093 24.7 10.0 113 176-292 11-147 (395)
455 cd04949 GT1_gtfA_like This fam 31.7 4E+02 0.0086 24.2 10.4 181 99-297 155-346 (372)
456 PRK11303 DNA-binding transcrip 31.6 2.7E+02 0.0059 24.9 8.3 36 100-135 237-275 (328)
457 KOG2862 Alanine-glyoxylate ami 31.6 48 0.001 30.8 3.1 62 237-299 79-143 (385)
458 PRK00025 lpxB lipid-A-disaccha 31.5 3.1E+02 0.0066 25.3 8.8 102 178-297 221-342 (380)
459 PRK11921 metallo-beta-lactamas 31.3 1.8E+02 0.0038 27.6 7.2 91 190-285 266-378 (394)
460 PRK13394 3-hydroxybutyrate deh 31.3 2.5E+02 0.0055 24.0 7.8 86 47-136 4-95 (262)
461 PRK09004 FMN-binding protein M 31.2 1.4E+02 0.0029 24.1 5.5 62 62-135 19-90 (146)
462 PRK13789 phosphoribosylamine-- 31.1 4E+02 0.0086 25.7 9.6 74 51-124 5-92 (426)
463 cd01421 IMPCH Inosine monophos 31.1 3.4E+02 0.0073 23.2 8.0 122 110-248 10-156 (187)
464 cd03812 GT1_CapH_like This fam 31.0 2.1E+02 0.0044 25.7 7.4 69 225-298 264-333 (358)
465 cd06333 PBP1_ABC-type_HAAT_lik 30.7 3.2E+02 0.0068 24.3 8.5 80 49-131 132-218 (312)
466 cd06364 PBP1_CaSR Ligand-bindi 30.6 2.1E+02 0.0046 28.2 7.8 87 162-250 174-268 (510)
467 cd06448 L-Ser-dehyd Serine deh 30.6 3.5E+02 0.0076 24.8 8.8 50 103-160 53-106 (316)
468 cd08194 Fe-ADH6 Iron-containin 30.6 1.5E+02 0.0032 28.0 6.4 73 164-241 12-95 (375)
469 PF02547 Queuosine_synth: Queu 30.5 2.4E+02 0.0051 26.5 7.5 86 178-270 174-264 (341)
470 PRK09271 flavodoxin; Provision 30.4 2.3E+02 0.0049 23.0 6.8 54 190-248 19-80 (160)
471 PLN02461 Probable pyruvate kin 30.3 2.1E+02 0.0045 28.5 7.4 66 227-297 395-484 (511)
472 PRK12827 short chain dehydroge 30.3 3.2E+02 0.0069 23.1 8.2 88 48-135 4-97 (249)
473 TIGR02690 resist_ArsH arsenica 30.2 3.7E+02 0.0081 23.4 9.3 73 176-249 25-119 (219)
474 PF13377 Peripla_BP_3: Peripla 30.1 2.1E+02 0.0045 22.4 6.5 74 63-136 29-106 (160)
475 TIGR01754 flav_RNR ribonucleot 30.0 1.5E+02 0.0033 23.4 5.6 34 99-135 48-89 (140)
476 PRK00702 ribose-5-phosphate is 29.9 1.7E+02 0.0036 25.6 6.2 50 225-274 18-69 (220)
477 PLN02730 enoyl-[acyl-carrier-p 29.9 68 0.0015 29.4 3.9 33 46-78 5-40 (303)
478 TIGR02622 CDP_4_6_dhtase CDP-g 29.8 2.2E+02 0.0048 26.0 7.5 31 49-79 3-34 (349)
479 cd06327 PBP1_SBP_like_1 Peripl 29.8 3.6E+02 0.0079 24.2 8.8 82 50-132 135-223 (334)
480 TIGR02667 moaB_proteo molybden 29.8 99 0.0021 25.5 4.5 48 62-113 24-75 (163)
481 PRK09620 hypothetical protein; 29.8 85 0.0018 27.6 4.3 33 48-80 1-50 (229)
482 cd08192 Fe-ADH7 Iron-containin 29.7 1.5E+02 0.0033 27.7 6.4 72 164-240 13-95 (370)
483 PF10678 DUF2492: Protein of u 29.7 1.3E+02 0.0027 21.9 4.4 41 159-200 18-60 (78)
484 cd06268 PBP1_ABC_transporter_L 29.6 3.6E+02 0.0078 23.0 9.1 31 101-132 190-221 (298)
485 cd00316 Oxidoreductase_nitroge 29.6 1.3E+02 0.0027 28.3 5.8 36 46-81 275-310 (399)
486 COG0655 WrbA Multimeric flavod 29.6 83 0.0018 26.9 4.2 27 219-245 67-100 (207)
487 COG0569 TrkA K+ transport syst 29.6 3.8E+02 0.0081 23.3 14.1 188 51-248 1-222 (225)
488 PRK11916 electron transfer fla 29.6 1.6E+02 0.0036 27.2 6.3 47 253-299 30-80 (312)
489 TIGR01138 cysM cysteine syntha 29.5 2.6E+02 0.0056 25.3 7.7 41 220-261 155-198 (290)
490 PRK06895 putative anthranilate 29.5 2E+02 0.0043 24.1 6.5 77 178-264 2-85 (190)
491 PRK09082 methionine aminotrans 29.5 4.7E+02 0.01 24.3 11.2 8 285-292 253-260 (386)
492 PRK12859 3-ketoacyl-(acyl-carr 29.4 94 0.002 27.1 4.6 89 47-135 3-106 (256)
493 smart00292 BRCT breast cancer 29.4 1E+02 0.0022 20.5 4.0 33 47-79 2-36 (80)
494 PF00231 ATP-synt: ATP synthas 29.4 2.7E+02 0.0059 25.1 7.8 68 226-293 74-156 (290)
495 COG1202 Superfamily II helicas 29.3 44 0.00096 33.7 2.6 63 42-110 433-499 (830)
496 cd06310 PBP1_ABC_sugar_binding 29.3 2.4E+02 0.0052 24.3 7.3 71 63-137 143-220 (273)
497 cd06371 PBP1_sensory_GC_DEF_li 29.2 4.8E+02 0.01 24.3 12.4 84 163-250 120-217 (382)
498 PRK08339 short chain dehydroge 29.2 2.2E+02 0.0048 24.9 7.0 8 227-234 85-92 (263)
499 cd00852 NifB NifB belongs to a 29.1 72 0.0016 24.0 3.4 32 258-289 73-104 (106)
500 cd06308 PBP1_sensor_kinase_lik 29.1 1.5E+02 0.0032 25.7 5.9 73 64-136 143-218 (270)
No 1
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=2.8e-45 Score=328.73 Aligned_cols=241 Identities=19% Similarity=0.156 Sum_probs=210.2
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEeChHHHHHHHHHHHHcCCC
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIITSPEAGSVFLEAWKEAGTP 126 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFTS~~av~~~~~~l~~~~~~ 126 (300)
|.|++||||||.+++.++++.|+++|++++.+|++++++.++...++..+ .+..||||||||+|||++|++.+.+.+.+
T Consensus 1 ~~g~~vlvTRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~~ 80 (255)
T PRK05752 1 MSGWRLLLTRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQ 80 (255)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCCC
Confidence 46999999999999999999999999999999999999987665565555 56899999999999999999998766542
Q ss_pred --CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHh--cccC-CCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 022234 127 --NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE--LPKN-GKKKCTVLYPASAKASNEIEEGLSNRGF 201 (300)
Q Consensus 127 --~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~--L~~~-~~~~~~vL~~rg~~~~~~L~~~L~~~G~ 201 (300)
+.+++|||++|+++|+++ |+.++++|..+++++|++. +... ..++++||++||+.+++.|.+.|++.|+
T Consensus 81 ~~~~~~~aVG~~Ta~al~~~------G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~ 154 (255)
T PRK05752 81 PPQQPWFSVGAATAAILQDY------GLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGA 154 (255)
T ss_pred CcCCEEEEECHHHHHHHHHc------CCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCC
Confidence 689999999999999999 9999988999999999976 4332 1367899999999999999999999999
Q ss_pred eeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhcccC--CCCceEEEeCHHHHHHHHHcCCCeEEe
Q 022234 202 EVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNVYY 277 (300)
Q Consensus 202 ~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~--~~~~~vv~IG~~Ta~~l~~~G~~~~~v 277 (300)
.|+++++|++++.......+.+.+ +.+|+|+|||++++++|++.+.... ..+.+++||||+|+++++++|++++++
T Consensus 155 ~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ta~a~~~~G~~~~~~ 234 (255)
T PRK05752 155 SVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSGQGFEHLQQLAGADWPELARLPLFVPSPRVAEQARAAGAQTVVD 234 (255)
T ss_pred EEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECCHHHHHHHHHHhChhHHHhcCceEEEeCHHHHHHHHHcCCCceee
Confidence 999999999987665554444433 5799999999999999999886532 247889999999999999999998889
Q ss_pred cCCCCHHHHHHHHHHHH
Q 022234 278 PTHPGLEGWVDSILEAL 294 (300)
Q Consensus 278 ~~~p~~~~l~~ai~~~~ 294 (300)
++.++.++|+++|.++-
T Consensus 235 a~~~t~~~L~~al~~~~ 251 (255)
T PRK05752 235 CRGASAAALLAALRRQA 251 (255)
T ss_pred CCCCChHHHHHHHHhcc
Confidence 99999999999998754
No 2
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=4.5e-45 Score=328.55 Aligned_cols=248 Identities=17% Similarity=0.182 Sum_probs=213.2
Q ss_pred ccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEeChHHHHHHHHHHH
Q 022234 43 SASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIITSPEAGSVFLEAWK 121 (300)
Q Consensus 43 ~~~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFTS~~av~~~~~~l~ 121 (300)
.+..+|.|++||||||.++++.+++.|++.|++++.+|++++++..+ ..+...+ .+.+||||||||+|||++|+..+.
T Consensus 11 ~~~~~l~g~~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~-~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~ 89 (266)
T PRK08811 11 GAATADAAWTLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDT-AQARDALRQALAAPIVVFTSPAAVRAAHRLLP 89 (266)
T ss_pred CCCcCCCCCEEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCc-hhHHHHHhhcccCCEEEEECHHHHHHHHHHhc
Confidence 34688999999999999999999999999999999999999998754 3334444 567999999999999999996543
Q ss_pred HcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 022234 122 EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGF 201 (300)
Q Consensus 122 ~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~ 201 (300)
.....+.+++|||++|+++|+++ |+.++++|..+++|+|++. +.....+++||++||+.+|++|.+.|+++|+
T Consensus 90 ~~~~~~~~~~AVG~~TA~aL~~~------G~~~~~~P~~~~se~Ll~l-~~~~~~g~~vLi~rg~~gr~~L~~~L~~~G~ 162 (266)
T PRK08811 90 LQRPARAHWLSVGEGTARALQAC------GIDEVVRPTRMDSEGLLAL-PLAQAPLQAVGLITAPGGRGLLAPTLQQRGA 162 (266)
T ss_pred ccCccCCeEEEECHHHHHHHHHc------CCCceeCCCCCCcHHHHhC-hhhhCCCCEEEEEeCCCcHHHHHHHHHHCCC
Confidence 33446899999999999999999 9999999999999999986 2222367999999999999999999999999
Q ss_pred eeEEEEeeeeeeCCCCcHHHHHHc---CCCCEEEEEChHHHHHHHHHhcccC---CCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 202 EVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 202 ~v~~~~vY~~~~~~~~~~~~~~~l---~~~d~IvftS~s~v~~~~~~~~~~~---~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
.|+++++|++++....... +..+ ..+|+++|||++++++|++.+.... +.+.+++|||++|++.++++|++.+
T Consensus 163 ~V~~~~vY~~~~~~~~~~~-~~~l~~~~~~d~i~ftS~sav~~f~~~l~~~~~~~l~~~~~v~is~rtA~~a~~~G~~~v 241 (266)
T PRK08811 163 RILRADVYQRVPLRLRAST-LAALSRAAPRSVLALSSAEALTLILQQLPDALRRALQQRPVVASSDRLLDAAHAAGFIHV 241 (266)
T ss_pred EEeEEEEEeeeCCCCCHHH-HHHHHHhCCCCEEEEChHHHHHHHHHHhhhhHHHHHhCCCEEEeCHHHHHHHHHcCCCce
Confidence 9999999999877654432 2222 4689999999999999999886532 3478899999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHHccCC
Q 022234 276 YYPTHPGLEGWVDSILEALREHGH 299 (300)
Q Consensus 276 ~v~~~p~~~~l~~ai~~~~~~~~~ 299 (300)
++++.|+.++|++++......|+|
T Consensus 242 ~vA~~~~~~~l~~a~~~~~~~~~~ 265 (266)
T PRK08811 242 MRAAGPLPAQLAAAAAAIMTPPRP 265 (266)
T ss_pred eeCCCCCHHHHHHHHHhhcCCCCC
Confidence 999999999999999999887776
No 3
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=100.00 E-value=3.4e-42 Score=325.53 Aligned_cols=245 Identities=20% Similarity=0.211 Sum_probs=210.1
Q ss_pred cCCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hc--CCccEEEEeChHHHHHHHHHH
Q 022234 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-ND--TIFDWIIITSPEAGSVFLEAW 120 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~--~~~d~ivFTS~~av~~~~~~l 120 (300)
+.+||.|++|+|||+. ++..+++.|+++|++++.+|++++++..+...++..+ .+ +.||||||||+|+|++|++.+
T Consensus 5 ~~~pL~g~rIlvtr~~-~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv~~~~~~l 83 (381)
T PRK07239 5 DSAPLAGFTVGVTAAR-RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGFRGWVEAA 83 (381)
T ss_pred CCCCCCCcEEEEeccC-CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHHHHHHHHH
Confidence 4499999999999987 8999999999999999999999999986655555544 22 689999999999999999988
Q ss_pred HHcCC--------CCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCC-----C
Q 022234 121 KEAGT--------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA-----K 187 (300)
Q Consensus 121 ~~~~~--------~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~-----~ 187 (300)
.+.+. .+.+++|||++|+++|+++ |+.++++|..+++++|++.+.....+|++||++++. .
T Consensus 84 ~~~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p~~~~~e~L~~~l~~~~~~g~~vli~~~~~~~~~~ 157 (381)
T PRK07239 84 DGWGLADELLEALSSARLLARGPKATGAIRAA------GLREEWSPASESSAEVLEYLLEEGVAGKRIAVQLHGATDEWE 157 (381)
T ss_pred HHcCChHHHHHHHcCCeEEEECccHHHHHHHc------CCCCccCCCCCccHHHHHHHhcCCCCCCEEEEEcCCCccccC
Confidence 76653 3789999999999999999 999999999999999999998766678999998776 4
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCc--HHHHHHc--CCCCEEEEEChHHHHHHHHHhcccC---------CCCc
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE---------QWSN 254 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~---------~~~~ 254 (300)
.+++|.+.|++.|+.|.++++|++++..... ......+ +++|+|+|||+++|++|++.+.... ..++
T Consensus 158 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l~~~~~d~v~FtS~stv~~f~~~l~~~~~~~~~~~~~~~~~ 237 (381)
T PRK07239 158 PLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAIASRGLDAVTFTSAPAVAALLERAREMGLLDQLLAALRTDV 237 (381)
T ss_pred chHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHHHcCCccEEEEcCHHHHHHHHHHHHHcCChHHHHHhhccCC
Confidence 4578999999999999999999998664432 2334444 4799999999999999999986532 1357
Q ss_pred eEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 255 SVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 255 ~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
+++||||.|+++++++|+++ .+|++|+.++|+++|.+++.-
T Consensus 238 ~i~aIGp~Ta~al~~~G~~~-~vp~~~t~~~Lv~~i~~~~~~ 278 (381)
T PRK07239 238 LAACVGPVTAAPLVRAGVPT-SAPERMRLGALARHITEELPL 278 (381)
T ss_pred EEEEECHHHHHHHHHcCCCc-cCCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999998 589999999999999987753
No 4
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.5e-42 Score=306.68 Aligned_cols=238 Identities=34% Similarity=0.452 Sum_probs=213.6
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEeChHHHHHHHHHHHHcCCC--
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIITSPEAGSVFLEAWKEAGTP-- 126 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFTS~~av~~~~~~l~~~~~~-- 126 (300)
||+|+||||+++.++++..|++.|++++.+|++++.+..+ +...+ .+..||||+|||+|||++|++.+...+.+
T Consensus 1 ~~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~---l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~ 77 (248)
T COG1587 1 GMRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPD---LEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDAL 77 (248)
T ss_pred CcEEEEeCchhhhHHHHHHHHhCCCcceeecceeeecchh---HHHHHhccccCCEEEEECHHHHHHHHHHHHhhccccc
Confidence 7999999999999999999999999999999999999654 33344 34559999999999999999999887653
Q ss_pred -CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEE
Q 022234 127 -NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 205 (300)
Q Consensus 127 -~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~ 205 (300)
+.+++|||++|++.|+++ |+.++++|..+++++|+..|......+++||+++|+.+++.|.+.|.+.|++|.+
T Consensus 78 ~~~~i~aVG~~Ta~~l~~~------G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~ 151 (248)
T COG1587 78 KNKKIAAVGEKTAEALRKL------GIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVRE 151 (248)
T ss_pred ccCeEEEEcHHHHHHHHHh------CCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEE
Confidence 899999999999999999 9999999999999999999998876679999999999999999999999999999
Q ss_pred EEeeeeeeCCCCcHHHHHH--cCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHHHHHHHcCCCeEEecCC
Q 022234 206 LNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTH 280 (300)
Q Consensus 206 ~~vY~~~~~~~~~~~~~~~--l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~ 280 (300)
+++|++++.......+... ..++|+|+|||++++++|++.++.... .+.+++||||.|++.++++|+++++.++.
T Consensus 152 ~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~~~~~~v~~IG~~Ta~~l~~~G~~~~~~~~~ 231 (248)
T COG1587 152 VEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSAVRALLALAPESGIEFLERKRVASIGPRTAETLKELGITVDIAAEK 231 (248)
T ss_pred EeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHHHHHHHHHccccchhHhhCceEEEecHHHHHHHHHcCCcceecccc
Confidence 9999999998874332222 368999999999999999999987642 36899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 022234 281 PGLEGWVDSILEALRE 296 (300)
Q Consensus 281 p~~~~l~~ai~~~~~~ 296 (300)
++.+++.+++.++...
T Consensus 232 ~~~~~l~~al~~~~~~ 247 (248)
T COG1587 232 PTLEALADALAKLLRE 247 (248)
T ss_pred cchHHHHHHHHHHhhc
Confidence 9999999999988754
No 5
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=1.1e-41 Score=302.89 Aligned_cols=232 Identities=18% Similarity=0.145 Sum_probs=195.3
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCCce
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPNVR 129 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~~~ 129 (300)
|+||||||.++++.+++.|+++|++++.+|++++++.++ .....+ ...||||||||+|||++|.+..... .+.+.+
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~--~~~~~l-~~~~d~iifTS~naV~~~~~~~~~~~~~~~~~ 77 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVA--AAFTAL-SEPHGAIAVTSAEAVRHLAALGERLLPHLALP 77 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChh--hhhhhh-cCCcCEEEEECHHHHHHHHhcchhhHHhcCCe
Confidence 689999999999999999999999999999999987642 111112 2468999999999999987643222 124789
Q ss_pred EEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEee
Q 022234 130 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 130 i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY 209 (300)
++|||++|+++|+++ |+.. ++|..+++++|++.+......+++|||+||+.++++|.+.|++.|+.|+++++|
T Consensus 78 ~~aVG~~Ta~~l~~~------G~~~-~~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY 150 (240)
T PRK09189 78 LFAVGEATAEAAREL------GFRH-VIEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECY 150 (240)
T ss_pred EEEEcHHHHHHHHHc------CCCC-CcCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEE
Confidence 999999999999999 9984 567789999999998765446789999999999999999999999999999999
Q ss_pred eeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhcccC----CCCceEEEeCHHHHHHHHHcCCCeEEecCCCCH
Q 022234 210 TTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE----QWSNSVACIGETTASAAKRLGLKNVYYPTHPGL 283 (300)
Q Consensus 210 ~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~----~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~ 283 (300)
++++.+....++.+.+ .++|+|+||||+++++|++.+.... +.+.+++|||++|++++++.|+..+++++.|+.
T Consensus 151 ~~~~~~~~~~~~~~~l~~~~~d~i~f~S~~~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~~~~~~ia~~~t~ 230 (240)
T PRK09189 151 DMLPVMYSPATLSAILGGAPFDAVLLYSRVAARRFFALMRLSIAPPADEKTRFLCLSARVAAALPASLRAQALIAAMPDE 230 (240)
T ss_pred EeecCCCChHHHHHHHhcCCCCEEEEeCHHHHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHhhccccceeecCCCCH
Confidence 9988776655444443 4799999999999999999986432 236789999999999999988776678999999
Q ss_pred HHHHHHHHH
Q 022234 284 EGWVDSILE 292 (300)
Q Consensus 284 ~~l~~ai~~ 292 (300)
++|++++.+
T Consensus 231 ~~l~~~l~~ 239 (240)
T PRK09189 231 KSLLSLLSK 239 (240)
T ss_pred HHHHHHhhh
Confidence 999998864
No 6
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=1.1e-40 Score=296.39 Aligned_cols=239 Identities=28% Similarity=0.367 Sum_probs=208.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc---CCC
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA---GTP 126 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~---~~~ 126 (300)
+|+||+||+..+++.+++.|+++|++++.+|++++++.+..........+..||+|||||++||++|++.+.+. .+.
T Consensus 1 ~~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~~ 80 (249)
T PRK05928 1 MMKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWPK 80 (249)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCCC
Confidence 38999999999999999999999999999999999997643321112257889999999999999999988732 235
Q ss_pred CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 022234 127 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 127 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 206 (300)
+.+++|||++|+++|+++ |+.++++|..++++++++.|.+....|+++|++||+.+++.|.+.|++.|+.|.++
T Consensus 81 ~~~~~avG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~ 154 (249)
T PRK05928 81 NKKYAAIGEKTALALKKL------GGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDEC 154 (249)
T ss_pred CCEEEEECHHHHHHHHHc------CCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeEE
Confidence 889999999999999999 99999999999999999999887456899999999999999999999999999999
Q ss_pred EeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhcccC----CCCceEEEeCHHHHHHHHHcCCCeEEecCC
Q 022234 207 NTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE----QWSNSVACIGETTASAAKRLGLKNVYYPTH 280 (300)
Q Consensus 207 ~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~----~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~ 280 (300)
++|++++.+.........+ +++|+|+|||+++|++|++.+...+ ..+.+++|||+.|+++++++|++++++|++
T Consensus 155 ~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~v~~~~~~~~~~~~~~~~~~~~~~aiG~~Ta~~l~~~G~~~~~~~~~ 234 (249)
T PRK05928 155 EVYERVPPKLDGAELLARLQSGEVDAVIFTSPSTVRAFFSLAPELGRREWLLSCKAVVIGERTAEALRELGIKVIIVPDS 234 (249)
T ss_pred EEEEeeCCCCChHHHHHHHHhCCCCEEEECCHHHHHHHHHHhcccchhHHHhCCeEEEeCHHHHHHHHHcCCCcceecCC
Confidence 9999988765443333322 5899999999999999999987653 237899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 022234 281 PGLEGWVDSILEAL 294 (300)
Q Consensus 281 p~~~~l~~ai~~~~ 294 (300)
++.++|+++|.+++
T Consensus 235 ~~~~~l~~~l~~~~ 248 (249)
T PRK05928 235 ADNEALLRALKELL 248 (249)
T ss_pred CChHHHHHHHHHhc
Confidence 99999999999875
No 7
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=100.00 E-value=2.5e-39 Score=285.45 Aligned_cols=218 Identities=30% Similarity=0.430 Sum_probs=187.0
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hc--CCccEEEEeChHHHHHHHHHHHHcC-----CCCceEEEEc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-ND--TIFDWIIITSPEAGSVFLEAWKEAG-----TPNVRIGVVG 134 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~--~~~d~ivFTS~~av~~~~~~l~~~~-----~~~~~i~aVG 134 (300)
++++++|+++|++++.+|++++++..+...+...+ .+ +.||+|||||+|||++|++.+...+ +.+.+++|||
T Consensus 1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG 80 (231)
T PF02602_consen 1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG 80 (231)
T ss_dssp -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence 47899999999999999999999966555566555 33 4999999999999999999987332 2488999999
Q ss_pred cchHHHHHHHhhccCCCccccccCC-CCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeee
Q 022234 135 AGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP 213 (300)
Q Consensus 135 ~~Ta~~L~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 213 (300)
++|+++|+++ |+.++++|. .+++++|++.|.... .++++||+||+.++++|.+.|++.|++|++++||++ .
T Consensus 81 ~~Ta~~l~~~------G~~~~~~~~~~~~s~~L~~~l~~~~-~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~-~ 152 (231)
T PF02602_consen 81 PKTAEALREY------GFQPDFVPSSEGSSEGLAELLKEQL-RGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYET-P 152 (231)
T ss_dssp HHHHHHHHHT------T-EECEE-TTSSSHHHHHGGHHHCC-TTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEE-E
T ss_pred HHHHHHHHHc------CCCccccCCCCCCHHHHHHHHHhhC-CCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeec-c
Confidence 9999999999 999998998 899999999888754 448999999999999999999999999999999999 5
Q ss_pred CCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhccc--CCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHH
Q 022234 214 VHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVD 288 (300)
Q Consensus 214 ~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~--~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ 288 (300)
......+..+.+ .++|+|+|||+++++.|++.+++. ...+.+++|||++|+++++++|+++++++++|+.++|++
T Consensus 153 ~~~~~~~~~~~l~~~~~~~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ta~~l~~~g~~~~~va~~~~~~~lv~ 231 (231)
T PF02602_consen 153 PEELSPELKEALDRGEIDAVVFTSPSAVRAFLELLKKNGALLKRVPIVAIGPRTAKALRELGFKVDIVAERPTIEALVE 231 (231)
T ss_dssp EHHHHHHHHHHHHHTTTSEEEESSHHHHHHHHHHSSGHHHHHTTSEEEESSHHHHHHHHHTT-SCSEEESSSSHHHHHH
T ss_pred cccchHHHHHHHHcCCCCEEEECCHHHHHHHHHHhHhhhhhhhCCEEEEECHHHHHHHHHcCCCceEECCCCChhHhhC
Confidence 444444444444 689999999999999999999864 346899999999999999999999999999999999986
No 8
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=4.7e-38 Score=313.78 Aligned_cols=241 Identities=21% Similarity=0.206 Sum_probs=205.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEeChHHHHHHHHHHHHcCCCC
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIITSPEAGSVFLEAWKEAGTPN 127 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFTS~~av~~~~~~l~~~~~~~ 127 (300)
.+|+||||||.+++.++++.|+++|++++.+|++++++.++...+...+ .+..||||||||+|||++|++.+...+..+
T Consensus 2 ~~~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~ 81 (656)
T PRK06975 2 RAFTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHA 81 (656)
T ss_pred CCCEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccC
Confidence 4899999999999999999999999999999999999987655566666 578999999999999999999887665568
Q ss_pred ceEEEEccchHHHHHHHhhccCCCcccccc------------CCCCcHHHHHHhcccCC--CCCCEEEEEcCCCChhHHH
Q 022234 128 VRIGVVGAGTASIFEEVIQSSKCSLDVAFS------------PSKATGKILASELPKNG--KKKCTVLYPASAKASNEIE 193 (300)
Q Consensus 128 ~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~------------p~~~~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~ 193 (300)
++++|||++|+++|+++ |+.++++ |..+++++|++.+.... ..|++|||+||+.+++.|.
T Consensus 82 ~~i~AVG~~Ta~aL~~~------Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L~ 155 (656)
T PRK06975 82 LPVAVVGPGSVAALARH------GIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVRGDGGREWLA 155 (656)
T ss_pred CeEEEECHHHHHHHHHc------CCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEcCCCCcHHHH
Confidence 89999999999999999 9998876 46689999999998754 5789999999999999999
Q ss_pred HHHHhCCCeeEEEEeeeeeeCCCCcH---HHHHHc-CCCCEEEEEChHHHHHHHHHhcc----cC---CCCceEEEeCHH
Q 022234 194 EGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA-LSIPVVAVASPSAVRSWVNLISD----TE---QWSNSVACIGET 262 (300)
Q Consensus 194 ~~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~l-~~~d~IvftS~s~v~~~~~~~~~----~~---~~~~~vv~IG~~ 262 (300)
+.|++.|+.|++++||++........ .+...+ +++|+|+|||++++++|++.+.+ .. +.+++++||||+
T Consensus 156 ~~L~~~Ga~V~~v~vY~~~~~~~~~~~~~~~~~~l~~~idav~fTS~s~v~~f~~la~~~l~~~~~~~l~~~~ivaIgpr 235 (656)
T PRK06975 156 ERLREAGAEVELVEAYRRVVPEPSIGAWERVHALLSGAPHAWLLTSSEAVRNLDELARAHLNPAEIDALKHAPLVAPHAR 235 (656)
T ss_pred HHHHHCCCEEEEEeEEEeeCCCcchhHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhhcCHHHHHHHhCCeEEEeCHH
Confidence 99999999999999999864433221 122222 46999999999999999997432 11 247889999999
Q ss_pred HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 263 TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 263 Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
|++.++++|++.+ ++..++.++++.++.++...
T Consensus 236 tA~~a~~~G~~~i-~~a~~~~e~ll~ai~~~~~~ 268 (656)
T PRK06975 236 IAEQARALGFDRI-TLTGAGDERIVRAFLTWADA 268 (656)
T ss_pred HHHHHHHcCCCee-ecCCCChHHHHHHHHHHhhc
Confidence 9999999999975 46778899999999988764
No 9
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=100.00 E-value=9.1e-38 Score=275.38 Aligned_cols=230 Identities=32% Similarity=0.462 Sum_probs=201.6
Q ss_pred EEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEeChHHHHHHHHHHHHc---CCCCc
Q 022234 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIITSPEAGSVFLEAWKEA---GTPNV 128 (300)
Q Consensus 53 VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFTS~~av~~~~~~l~~~---~~~~~ 128 (300)
||+|||.+..+.+.+.|+++|++++.+|++++++. +...+...+ ....+|+|||||+++|+.|++.+.+. .+.+.
T Consensus 1 iLi~r~~~~~~~l~~~L~~~G~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~iiftS~~av~~~~~~~~~~~~~~~~~~ 79 (239)
T cd06578 1 VLVTRPRPQADELAALLEALGAEVLELPLIEIEPL-DDAELDAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGL 79 (239)
T ss_pred CEecCchHHhHHHHHHHHHcCCcEEEeeeEEEecC-ChHHHHHHHHhcCCCCEEEEECHHHHHHHHHHHHhhCCccccCC
Confidence 68999999999999999999999999999999986 434444444 45689999999999999999998764 35699
Q ss_pred eEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe
Q 022234 129 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 208 (300)
Q Consensus 129 ~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 208 (300)
+++|||++|+++|++. |+.+++.|..+++++|++.|......++++++++|+..++.|.+.|++.|++|.++++
T Consensus 80 ~~~avG~~Ta~~l~~~------g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~ 153 (239)
T cd06578 80 KIAAVGPKTAEALREA------GLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEV 153 (239)
T ss_pred EEEEECHHHHHHHHHc------CCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEE
Confidence 9999999999999999 9999998899999999999988744689999999999999999999999999999999
Q ss_pred eeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhccc---CCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCH
Q 022234 209 YTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDT---EQWSNSVACIGETTASAAKRLGLKNVYYPTHPGL 283 (300)
Q Consensus 209 Y~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~---~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~ 283 (300)
|++++.+.. +...+.+ ..+|+|+|||+++++.|++.+.+. .+.+.+++|||++|+++++++|++++++++.++.
T Consensus 154 Y~~~~~~~~-~~~~~~l~~~~~~~iiftS~~~v~~f~~~~~~~~~~~~~~~~~~aig~~t~~~l~~~g~~~~~~~~~~~~ 232 (239)
T cd06578 154 YRTVPPDLD-AELLELLEEGAIDAVLFTSPSTVRNLLELLGKEGRALLKNVKIAAIGPRTAEALRELGLKVVIVAESPTL 232 (239)
T ss_pred EEEECCCCc-HHHHHHHHcCCCcEEEEeCHHHHHHHHHHHhhhhhhhhcCCeEEEECHHHHHHHHHcCCCceeeecCCCh
Confidence 999987754 2223323 367899999999999999998764 2458999999999999999999999999999999
Q ss_pred HHHHHHH
Q 022234 284 EGWVDSI 290 (300)
Q Consensus 284 ~~l~~ai 290 (300)
++|+++|
T Consensus 233 ~~l~~~i 239 (239)
T cd06578 233 EALLEAL 239 (239)
T ss_pred HHHHhhC
Confidence 9999874
No 10
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=1.6e-34 Score=277.74 Aligned_cols=213 Identities=10% Similarity=0.092 Sum_probs=178.4
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCcc
Q 022234 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFD 103 (300)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d 103 (300)
-+++|++++|++. +||+|++|||||+.+++..+++.|+++|++++.+|.+++++.+..+ ..+ ++..||
T Consensus 234 vv~~~~~~~~~~~--------~PL~G~~IlVtR~~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~~---~~l~~l~~yd 302 (474)
T PRK07168 234 VVSLRNQIAWKER--------KPLHGKKVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLTL---EQINEIFNVN 302 (474)
T ss_pred Hhccccccchhhc--------ccccCceEEeeccHHHHHHHHHHHHHcCCEEEEeccEEeeCCCCcH---HHHHHhccCC
Confidence 3678899999999 9999999999999999999999999999999999999988654332 233 467899
Q ss_pred EEEEeChHHHHHHHHHHHHcCCC----CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCE
Q 022234 104 WIIITSPEAGSVFLEAWKEAGTP----NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT 179 (300)
Q Consensus 104 ~ivFTS~~av~~~~~~l~~~~~~----~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~ 179 (300)
||||||+|+|++||+.+.+.+.| ..+++|||++|+++|+++ |+.++ |..+++++++.. ... . ++
T Consensus 303 wlvFTS~ngV~~Ff~~l~~~~~D~R~l~~kiaavG~~Ta~aL~~~------Gl~~d--p~~~~~e~~l~~-g~~--~-~~ 370 (474)
T PRK07168 303 RLVFCSAESVEILMQSCSKYKKDIRSLQAELQHMNVATQEKLMQY------GLLSK--EAKFSSDTTVYL-GRN--I-NR 370 (474)
T ss_pred EEEEcCHHHHHHHHHHHHHcCCChHHhCCEEEEECHHHHHHHHhC------CCccC--CcccccceeEEe-ccc--c-cc
Confidence 99999999999999999988765 589999999999999999 99985 899999999855 322 2 69
Q ss_pred EEEEcCCCChhHHHHHHHhCCCe-eEEEEeee--eeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccC---CCC
Q 022234 180 VLYPASAKASNEIEEGLSNRGFE-VVRLNTYT--TEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTE---QWS 253 (300)
Q Consensus 180 vL~~rg~~~~~~L~~~L~~~G~~-v~~~~vY~--~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~---~~~ 253 (300)
++++++. .|+. |.+...|+ ++.......++.+ . .+|.|+|||+++|++|++.+...+ ...
T Consensus 371 vl~~~~~------------~g~~~~~~~~~y~~~~~~~~~~~~~l~e-~-~~d~iiFtS~ssV~~f~~~~~~~~~~~~~~ 436 (474)
T PRK07168 371 IAFIQEK------------IGAGSYMMTHKYTIDHRFDEVHSRMLSE-F-LWDSIVFEGRASIDTFLAEVKRLGFIDIVT 436 (474)
T ss_pred eeecccC------------CCCceEEEEEEeeccccccchhhhHHhh-c-cCceEEECCHHHHHHHHHHHHhhCchhhcc
Confidence 9999976 5666 99999999 5553332222222 2 389999999999999999987654 247
Q ss_pred ceEEEeCHHHHHHHHHcCCCe
Q 022234 254 NSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 254 ~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
++++||||.|+++|.++|++.
T Consensus 437 ~~~~~iGp~t~~~a~~~G~~~ 457 (474)
T PRK07168 437 LPFSYTDVPTLHYANKVGFHN 457 (474)
T ss_pred CceEEeCHHHHHHHHHhCCCc
Confidence 899999999999999999986
No 11
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.1e-33 Score=236.16 Aligned_cols=241 Identities=20% Similarity=0.235 Sum_probs=208.5
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEeChHHHHHHHHHHHHc-----
Q 022234 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIITSPEAGSVFLEAWKEA----- 123 (300)
Q Consensus 51 ~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFTS~~av~~~~~~l~~~----- 123 (300)
++|++..... ..+.+.+.|+++|.+++.+|++...... .++++..| +..+|-.|||||+..|+++.+.+.+.
T Consensus 4 ~~vlllK~~s~~~D~Y~~~l~~~~~epifIP~l~f~f~~-l~~lr~kL~~p~kY~giIfTSpR~VEa~~eaL~q~~tel~ 82 (260)
T KOG4132|consen 4 VTVLLLKNKSVPIDPYEEELRSYGLEPIFIPVLSFTFVN-LQQLRAKLNNPPKYAGIIFTSPRCVEALNEALIQTETELK 82 (260)
T ss_pred eeEEEecCCCCCCCHHHHHHHhcCCCceeecceeeeecc-HHHHHHHhcCchhhceeEEeChHHHHHHHHHhccccchhh
Confidence 4677776654 6689999999999999999999998864 46777777 45779999999999999999999732
Q ss_pred -CCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHHHhCC
Q 022234 124 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRG 200 (300)
Q Consensus 124 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G 200 (300)
.|....+|+||++|...++.. |+.....-...+++.|+++|.+.. ++..++|++||+..++.|+..|.+.|
T Consensus 83 ~~w~a~~vYtVG~aT~~si~~~------~~l~T~Ge~~gNa~~LaD~Ive~~~~~~alPLLfpcGn~~rdil~kkL~~~G 156 (260)
T KOG4132|consen 83 AAWLAKHVYTVGPATHASIRRL------GFLNTHGEDAGNAEILADLIVETFTDKRALPLLFPCGNLRRDILPKKLHDKG 156 (260)
T ss_pred hHHhhcceeeeccccHHHHHHh------cCccccccccccHHHHhHhhhhcCCCcccCceEEEcccchhHHHHHHHHhCC
Confidence 245789999999999999998 776656656689999999998743 35568999999999999999999999
Q ss_pred CeeEEEEeeeeeeCCCCcHHHHHHc---CCCCEEEEEChHHHHHHHHHhcccC--CCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 201 FEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 201 ~~v~~~~vY~~~~~~~~~~~~~~~l---~~~d~IvftS~s~v~~~~~~~~~~~--~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
+.|+.++||+++..+....++...+ +.+|||+|+||+++....+.++... ..+.++++|||+|.++|++.|.+++
T Consensus 157 ~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~~s~~~~k~aaIGPtT~kaL~~~g~~~~ 236 (260)
T KOG4132|consen 157 IRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSNRSGDHLKLAAIGPTTRKALEDLGVKVD 236 (260)
T ss_pred ceeeEEEEEeeeecccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhccchhheeEEEeCcchHHHHHHcCCCcc
Confidence 9999999999999988766655544 4789999999999999999988764 3478999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHHccC
Q 022234 276 YYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 276 ~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
.+++.|++++|++.|+.+..+++
T Consensus 237 ~vs~~P~pe~L~~~I~~~~~~~~ 259 (260)
T KOG4132|consen 237 VVSPAPDPESLADAIELYQRHKG 259 (260)
T ss_pred eecCCCCHHHHHHHHHhhhhccC
Confidence 99999999999999999988775
No 12
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=99.65 E-value=1.5e-15 Score=134.77 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=102.8
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCc-hhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcC--
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAG-- 124 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~-~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~-- 124 (300)
+.|++||++|+....+.+.+.|+++|+++..+|+|++++.+.. ......+....+|+|+|||+++|+.|++.+.+.+
T Consensus 123 ~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~v~~~~~~~~~~~~~ 202 (249)
T PRK05928 123 LKGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTSPSTVRAFFSLAPELGRR 202 (249)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECCHHHHHHHHHHhcccchh
Confidence 6799999999999999999999999999999999999876432 2222222346899999999999999999887654
Q ss_pred --CCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 125 --TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 125 --~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
..+.+++|||+.|+++++++ |+.++++|+.++.++|++.|.+.
T Consensus 203 ~~~~~~~~~aiG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~~l~~~ 247 (249)
T PRK05928 203 EWLLSCKAVVIGERTAEALREL------GIKVIIVPDSADNEALLRALKEL 247 (249)
T ss_pred HHHhCCeEEEeCHHHHHHHHHc------CCCcceecCCCChHHHHHHHHHh
Confidence 24889999999999999999 99999999999999999888653
No 13
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=99.60 E-value=1.4e-14 Score=127.47 Aligned_cols=118 Identities=21% Similarity=0.272 Sum_probs=103.4
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc---
Q 022234 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA--- 123 (300)
Q Consensus 47 ~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~--- 123 (300)
.+.|++|+++|.......+.+.|+++|+.+..+|+|+.++.++.+...+.+....+|+|+|||+++|+.|++.+.+.
T Consensus 119 ~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~~~~~~~iiftS~~~v~~f~~~~~~~~~~ 198 (239)
T cd06578 119 DGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELLEEGAIDAVLFTSPSTVRNLLELLGKEGRA 198 (239)
T ss_pred CCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCcHHHHHHHHcCCCcEEEEeCHHHHHHHHHHHhhhhhh
Confidence 46899999999998889999999999999999999999987654445555556678999999999999999998764
Q ss_pred CCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhc
Q 022234 124 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 170 (300)
Q Consensus 124 ~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 170 (300)
.+.+.+++|||+.|++.|++. |++++++|..++.++|++.+
T Consensus 199 ~~~~~~~~aig~~t~~~l~~~------g~~~~~~~~~~~~~~l~~~i 239 (239)
T cd06578 199 LLKNVKIAAIGPRTAEALREL------GLKVVIVAESPTLEALLEAL 239 (239)
T ss_pred hhcCCeEEEECHHHHHHHHHc------CCCceeeecCCChHHHHhhC
Confidence 346899999999999999999 99999999988899998754
No 14
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=99.53 E-value=1.3e-13 Score=130.64 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=100.0
Q ss_pred CCCCCCeEEEeCCC-----CchHHHHHHHHhCCCCEEEeeeeEeeeCCCch---hHHHhhhcCCccEEEEeChHHHHHHH
Q 022234 46 ASNSNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNDTIFDWIIITSPEAGSVFL 117 (300)
Q Consensus 46 ~~l~g~~VlitR~~-----~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~---~l~~~l~~~~~d~ivFTS~~av~~~~ 117 (300)
....|++|++.+.. +..+.+.+.|++.|++|..+|+|++++..+.+ .+...+..+.+|+|+|||+++|++|+
T Consensus 138 ~~~~g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l~~~~~d~v~FtS~stv~~f~ 217 (381)
T PRK07239 138 EGVAGKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAIASRGLDAVTFTSAPAVAALL 217 (381)
T ss_pred CCCCCCEEEEEcCCCccccCchHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHHHcCCccEEEEcCHHHHHHHH
Confidence 45679999998765 34468999999999999999999988754322 33333445689999999999999999
Q ss_pred HHHHHcC---------CCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC
Q 022234 118 EAWKEAG---------TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 174 (300)
Q Consensus 118 ~~l~~~~---------~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 174 (300)
+.+.+.+ ..+++++|||+.|+++|+++ |+.+ .+|+.++.++|++.|.+..
T Consensus 218 ~~l~~~~~~~~~~~~~~~~~~i~aIGp~Ta~al~~~------G~~~-~vp~~~t~~~Lv~~i~~~~ 276 (381)
T PRK07239 218 ERAREMGLLDQLLAALRTDVLAACVGPVTAAPLVRA------GVPT-SAPERMRLGALARHITEEL 276 (381)
T ss_pred HHHHHcCChHHHHHhhccCCEEEEECHHHHHHHHHc------CCCc-cCCCCCCHHHHHHHHHHHh
Confidence 9987643 24678999999999999999 9998 5899999999999987543
No 15
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=99.49 E-value=2.9e-13 Score=121.43 Aligned_cols=121 Identities=12% Similarity=0.119 Sum_probs=102.6
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCC-CchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc--C
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGP-DTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA--G 124 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~-~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~--~ 124 (300)
..|++||++|.....+.+.+.|++.|++|..+++|+.++.. +...+.+.+..+.+|+|+|||+++++.|++.+... .
T Consensus 128 ~~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~~~~~~~~~~~~~~~ 207 (255)
T PRK05752 128 VPDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSGQGFEHLQQLAGADWPE 207 (255)
T ss_pred CCCCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECCHHHHHHHHHHhChhHHH
Confidence 46899999999999999999999999999999999987654 23344444556789999999999999999887542 2
Q ss_pred CCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC
Q 022234 125 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 174 (300)
Q Consensus 125 ~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 174 (300)
+.+.+++|||+.|++++++. |+.++.++..++.++|++.|.+..
T Consensus 208 ~~~~~~~~ig~~ta~a~~~~------G~~~~~~a~~~t~~~L~~al~~~~ 251 (255)
T PRK05752 208 LARLPLFVPSPRVAEQARAA------GAQTVVDCRGASAAALLAALRRQA 251 (255)
T ss_pred hcCceEEEeCHHHHHHHHHc------CCCceeeCCCCChHHHHHHHHhcc
Confidence 35789999999999999999 999888888899999999887653
No 16
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=99.48 E-value=4e-13 Score=121.14 Aligned_cols=114 Identities=23% Similarity=0.332 Sum_probs=97.2
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCc-HHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCc
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-QTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSN 254 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~ 254 (300)
.|++||+.|.......|.+.|++.|+.+..++.-+.++.+... ...+..+.++|||+|||+.+|+.|+...+...+.+.
T Consensus 17 ~g~~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~~~~~~~~ 96 (266)
T PRK08811 17 AAWTLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVRAAHRLLPLQRPARA 96 (266)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHHHHHHHHhcccCccCC
Confidence 6799999999999999999999999999999998877654321 223345679999999999999999875533334578
Q ss_pred eEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHH
Q 022234 255 SVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 289 (300)
Q Consensus 255 ~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~a 289 (300)
+++|||+.|+++++++|+.++++|+.++-++|++.
T Consensus 97 ~~~AVG~~TA~aL~~~G~~~~~~P~~~~se~Ll~l 131 (266)
T PRK08811 97 HWLSVGEGTARALQACGIDEVVRPTRMDSEGLLAL 131 (266)
T ss_pred eEEEECHHHHHHHHHcCCCceeCCCCCCcHHHHhC
Confidence 99999999999999999999899999999999997
No 17
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=99.45 E-value=1e-13 Score=122.05 Aligned_cols=116 Identities=23% Similarity=0.294 Sum_probs=98.5
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc--C
Q 022234 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA--G 124 (300)
Q Consensus 47 ~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~--~ 124 (300)
.+.|++||+.|.......+.+.|+++|++|..+++|+..+......+.+.+..+.+|+|+|||+.+++.|++.+.+. .
T Consensus 114 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~~~~~v~ftS~~~~~~~~~~~~~~~~~ 193 (231)
T PF02602_consen 114 QLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDRGEIDAVVFTSPSAVRAFLELLKKNGAL 193 (231)
T ss_dssp CCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHTTTSEEEESSHHHHHHHHHHSSGHHHH
T ss_pred hCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcCCCCEEEECCHHHHHHHHHHhHhhhhh
Confidence 46678999999999999999999999999999999999222222344455556889999999999999999988754 4
Q ss_pred CCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHH
Q 022234 125 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILAS 168 (300)
Q Consensus 125 ~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~ 168 (300)
+++.+++|+|+.|++++++. |++++.+|+.++.++|++
T Consensus 194 ~~~~~~~~ig~~ta~~l~~~------g~~~~~va~~~~~~~lv~ 231 (231)
T PF02602_consen 194 LKRVPIVAIGPRTAKALREL------GFKVDIVAERPTIEALVE 231 (231)
T ss_dssp HTTSEEEESSHHHHHHHHHT------T-SCSEEESSSSHHHHHH
T ss_pred hhCCEEEEECHHHHHHHHHc------CCCceEECCCCChhHhhC
Confidence 56899999999999999999 999999999999999874
No 18
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=99.44 E-value=1.4e-12 Score=115.77 Aligned_cols=118 Identities=17% Similarity=0.119 Sum_probs=98.6
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCC-chhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc---
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA--- 123 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~-~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~--- 123 (300)
..|++||+.|.....+.+.+.|+++|+.+..+++|+.++.+. .+.+...+..+.+|+|+|||+.+++.|++.+...
T Consensus 116 ~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S~~~~~~f~~~~~~~~~~ 195 (240)
T PRK09189 116 APTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYSRVAARRFFALMRLSIAP 195 (240)
T ss_pred CCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeCHHHHHHHHHHHhhhcCc
Confidence 368999999999999999999999999999999999887643 2344455556789999999999999999988643
Q ss_pred -CCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 124 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 124 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
...+.+++|||+.|++++++. |.....+++.++.++|++.|.
T Consensus 196 ~~l~~~~~v~Ig~~ta~al~~~------~~~~~~ia~~~t~~~l~~~l~ 238 (240)
T PRK09189 196 PADEKTRFLCLSARVAAALPAS------LRAQALIAAMPDEKSLLSLLS 238 (240)
T ss_pred ccccccCeEEeCHHHHHHHhhc------cccceeecCCCCHHHHHHHhh
Confidence 235788999999999999887 665556788899999998764
No 19
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=99.43 E-value=2.4e-12 Score=124.46 Aligned_cols=229 Identities=13% Similarity=0.130 Sum_probs=154.7
Q ss_pred CCCCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEee---------eCCCc--------------h----hHH-
Q 022234 48 NSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHA---------QGPDT--------------D----RLS- 94 (300)
Q Consensus 48 l~g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~---------~~~~~--------------~----~l~- 94 (300)
..|++|++.-..+ ...+..+.|.+.|+++..+|-+.-. |.... . ..+
T Consensus 78 ~~Gk~VvrL~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~viT~h~~~~~~~~~~~ 157 (474)
T PRK07168 78 KEGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPLTDHGKY 157 (474)
T ss_pred hCCCEEEEEeCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEEccCcCCccccchhH
Confidence 4688888764432 3457888999999999999877622 11100 0 000
Q ss_pred HhhhcCCccEEEEeChHHHHHHHHHHHHcCC-CCceEEEEccch----------HHHH----HHHhhccCCCccc---cc
Q 022234 95 SVLNDTIFDWIIITSPEAGSVFLEAWKEAGT-PNVRIGVVGAGT----------ASIF----EEVIQSSKCSLDV---AF 156 (300)
Q Consensus 95 ~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~-~~~~i~aVG~~T----------a~~L----~~~~~~~~~G~~~---~~ 156 (300)
..+. ..-..++++.......+.+.+.+.+. ++.+++++-..| -+.+ ++. ++.. .+
T Consensus 158 ~~l~-~~~tlV~lm~~~~l~~I~~~L~~~G~~~~tpvavv~~~t~~~Qri~~~tL~~l~~~~~~~------~~~~paviv 230 (474)
T PRK07168 158 NSSH-NSDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNE------NISNPSMTI 230 (474)
T ss_pred HHhc-CCCeEEEEcChhhHHHHHHHHHHcCcCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhc------CCCCCEEEE
Confidence 0111 11245666777777777777777765 355555544333 2333 232 3321 11
Q ss_pred cCCCCcHHHHHHh---cccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEE
Q 022234 157 SPSKATGKILASE---LPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAV 233 (300)
Q Consensus 157 ~p~~~~~e~L~~~---L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~Ivf 233 (300)
+.. .-.+.+. .......|++||+.|+......|.+.|++.|++|.++++-+..+.+.. +..++.+.++|||+|
T Consensus 231 vG~---vv~~~~~~~~~~~~PL~G~~IlVtR~~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~-~~~l~~l~~ydwlvF 306 (474)
T PRK07168 231 VGD---VVSLRNQIAWKERKPLHGKKVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLT-LEQINEIFNVNRLVF 306 (474)
T ss_pred ECh---HhccccccchhhcccccCceEEeeccHHHHHHHHHHHHHcCCEEEEeccEEeeCCCCc-HHHHHHhccCCEEEE
Confidence 211 1112122 223334689999999999999999999999999999999987654433 445666789999999
Q ss_pred EChHHHHHHHHHhcccCC----CCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHH
Q 022234 234 ASPSAVRSWVNLISDTEQ----WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 289 (300)
Q Consensus 234 tS~s~v~~~~~~~~~~~~----~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~a 289 (300)
||+.+|+.|++.+.+.+. ...+++|||+.|+++|+++|+.++ |++++.+++++.
T Consensus 307 TS~ngV~~Ff~~l~~~~~D~R~l~~kiaavG~~Ta~aL~~~Gl~~d--p~~~~~e~~l~~ 364 (474)
T PRK07168 307 CSAESVEILMQSCSKYKKDIRSLQAELQHMNVATQEKLMQYGLLSK--EAKFSSDTTVYL 364 (474)
T ss_pred cCHHHHHHHHHHHHHcCCChHHhCCEEEEECHHHHHHHHhCCCccC--CcccccceeEEe
Confidence 999999999999987642 137899999999999999999884 888888888765
No 20
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=99.42 E-value=1.9e-12 Score=115.75 Aligned_cols=118 Identities=24% Similarity=0.304 Sum_probs=102.7
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCc-hhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCC---
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGT--- 125 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~-~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~--- 125 (300)
|++|++.|.....+.+.+.|.++|+++..+++|+.++.... ..+...+....+|+|+|||+.+|++|++.+...+.
T Consensus 123 ~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~~ 202 (248)
T COG1587 123 GKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSAVRALLALAPESGIEFL 202 (248)
T ss_pred CCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHHHHHHHHHccccchhHh
Confidence 79999999999999999999999999999999999997643 23334446789999999999999999999877653
Q ss_pred CCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 126 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 126 ~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
.+.+++|||+.|++.++++ |+++++.+...+.+.|.+.+...
T Consensus 203 ~~~~v~~IG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~al~~~ 244 (248)
T COG1587 203 ERKRVASIGPRTAETLKEL------GITVDIAAEKPTLEALADALAKL 244 (248)
T ss_pred hCceEEEecHHHHHHHHHc------CCcceecccccchHHHHHHHHHH
Confidence 3689999999999999999 99998888888888888877653
No 21
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=99.31 E-value=2.3e-11 Score=122.30 Aligned_cols=119 Identities=19% Similarity=0.226 Sum_probs=100.6
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCc--HHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCC
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 253 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~ 253 (300)
.+.+||+.|.......|.+.|++.|+++..+++.+..+.+... ...+..+.++|+|||||+.+|++|++.+...+..+
T Consensus 2 ~~~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~ 81 (656)
T PRK06975 2 RAFTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHA 81 (656)
T ss_pred CCCEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccC
Confidence 3579999999999999999999999999999999988766532 22334467999999999999999999876543347
Q ss_pred ceEEEeCHHHHHHHHHcCCCeEEe------------cCCCCHHHHHHHHHHHH
Q 022234 254 NSVACIGETTASAAKRLGLKNVYY------------PTHPGLEGWVDSILEAL 294 (300)
Q Consensus 254 ~~vv~IG~~Ta~~l~~~G~~~~~v------------~~~p~~~~l~~ai~~~~ 294 (300)
++++|||+.|+++++++|+.++++ +..++.++|++.+....
T Consensus 82 ~~i~AVG~~Ta~aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~ 134 (656)
T PRK06975 82 LPVAVVGPGSVAALARHGIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAF 134 (656)
T ss_pred CeEEEECHHHHHHHHHcCCCCceeeccccccccCCCCCccchHHHHHhHHHhc
Confidence 899999999999999999997766 46679999999998764
No 22
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=99.27 E-value=9.1e-11 Score=100.17 Aligned_cols=119 Identities=16% Similarity=0.259 Sum_probs=104.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCc-hhHHHhhh-cCCccEEEEeChHHHHHHHHHHHHcC--C
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAG--T 125 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~-~~l~~~l~-~~~~d~ivFTS~~av~~~~~~l~~~~--~ 125 (300)
..-.|+.-.....+.+.++|.+.|+.|..+-+|+++..++. .++..+++ -+..|||+|.||.+++...+.+.... .
T Consensus 133 alPLLfpcGn~~rdil~kkL~~~G~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~~s~ 212 (260)
T KOG4132|consen 133 ALPLLFPCGNLRRDILPKKLHDKGIRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSNRSG 212 (260)
T ss_pred cCceEEEcccchhHHHHHHHHhCCceeeEEEEEeeeecccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhccch
Confidence 34478888888899999999999999999999999998874 46677774 35899999999999999999988754 4
Q ss_pred CCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC
Q 022234 126 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 174 (300)
Q Consensus 126 ~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 174 (300)
++.++++||+.|+++|++. |.+++.+...++.+.|+..|....
T Consensus 213 ~~~k~aaIGPtT~kaL~~~------g~~~~~vs~~P~pe~L~~~I~~~~ 255 (260)
T KOG4132|consen 213 DHLKLAAIGPTTRKALEDL------GVKVDVVSPAPDPESLADAIELYQ 255 (260)
T ss_pred hheeEEEeCcchHHHHHHc------CCCcceecCCCCHHHHHHHHHhhh
Confidence 6999999999999999999 999999999999999999887543
No 23
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=96.85 E-value=0.068 Score=47.04 Aligned_cols=178 Identities=13% Similarity=0.059 Sum_probs=100.6
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.+..++. ..+.+...+.+ ....+|+||+++..........+.+ .+.++++++...
T Consensus 20 ~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~---~~ipvV~~~~~~--- 88 (268)
T cd06298 20 GIDDIATMYKYNIILSNS-----DNDKEKELKVLNNLLAKQVDGIIFMGGKISEEHREEFKR---SPTPVVLAGSVD--- 88 (268)
T ss_pred HHHHHHHHcCCeEEEEeC-----CCCHHHHHHHHHHHHHhcCCEEEEeCCCCcHHHHHHHhc---CCCCEEEEcccc---
Confidence 445677888998876642 11222211222 2467999999865433334444433 367889998642
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-h-------hHHHHHHHhCCCeeEEEEeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-S-------NEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-~-------~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
... ++.. +.++.+ .+..+++.|.+. +.++++++.+... . .-+.+.++++|..+....++..
T Consensus 89 -~~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~ 158 (268)
T cd06298 89 -EDN------ELPS-VNIDYKKAAFEATELLIKN--GHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEG 158 (268)
T ss_pred -CCC------CCCE-EEECcHHHHHHHHHHHHHc--CCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeC
Confidence 111 2221 223332 345556666553 3578999986654 1 3455678888866543333332
Q ss_pred eeCCCCcHHHHHH-cC--CCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 212 EPVHHVDQTVLKQ-AL--SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l~--~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
........+..+. +. .+++|+.++...+..+++.+.+.+. .++.+++++..
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~vvg~d~~ 215 (268)
T cd06298 159 DYTYESGYELAEELLEDGKPTAAFVTDDELAIGILNAAQDAGLKVPEDFEIIGFNNT 215 (268)
T ss_pred CCChhHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEeeccH
Confidence 2111111122222 22 2899999998888888888876552 37788898854
No 24
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=96.77 E-value=0.044 Score=48.20 Aligned_cols=184 Identities=11% Similarity=0.038 Sum_probs=100.2
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.+++.|+++...+.-. .+ ....++.+.+.....|.||+++.+.-..+.+.+.+ .++++++++... .
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~-~~-~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvv~~~~~~----~ 89 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGY-SP-EREEELLRTLLSRRPAGLILTGLEHTERTRQLLRA---AGIPVVEIMDLP----P 89 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCC-Cc-hhHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHh---cCCCEEEEecCC----C
Confidence 345567788898887755411 11 11111212223467999999886543344444433 367888887532 1
Q ss_pred HHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 143 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
. .....+..+. ..+..+++.|.+. ..+++.++.+... ..-+.+.|++.|..+.....+.....
T Consensus 90 -~------~~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~ 160 (268)
T cd01575 90 -D------PIDMAVGFSHAEAGRAMARHLLAR--GYRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSS 160 (268)
T ss_pred -C------CCCCeEEeCcHHHHHHHHHHHHHC--CCCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCCC
Confidence 1 1111112222 2345556666654 3468888877653 23456678888864433322221111
Q ss_pred CCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccC---CCCceEEEeCHHHH
Q 022234 215 HHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTA 264 (300)
Q Consensus 215 ~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~---~~~~~vv~IG~~Ta 264 (300)
.....+..+. + .++++|+..|-..+..+++.+.+.+ ..++.+++++....
T Consensus 161 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~di~vig~d~~~~ 217 (268)
T cd01575 161 FALGRELLAELLARWPDLDAVFCSNDDLALGALFECQRRGISVPEDIAIAGFGDLEI 217 (268)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCcceEEEecCCchh
Confidence 1111122222 2 3589999999888877887777654 24678888886643
No 25
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=96.72 E-value=0.038 Score=48.67 Aligned_cols=181 Identities=9% Similarity=0.019 Sum_probs=100.7
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
.+.+.++++|++++..... +.....+.+....+|+||+++.+.-......+.+ .+.+++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~------~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~----- 85 (261)
T cd06272 20 GINQAISKNGYNMNVSITP------SLAEAEDLFKENRFDGVIIFGESASDVEYLYKIK---LAIPVVSYGVDYD----- 85 (261)
T ss_pred HHHHHHHHcCCEEEEEecc------cHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHHH---cCCCEEEEcccCC-----
Confidence 4456677889888776543 1122222333467999998876543333333333 3678999987532
Q ss_pred HhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeCC
Q 022234 144 VIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 215 (300)
Q Consensus 144 ~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~ 215 (300)
. ++.. +.... ..+..+++.|.+. ..++++++.+... ..-+.+.+++.|..+....++......
T Consensus 86 ~------~~~~-V~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~ 156 (261)
T cd06272 86 L------KYPI-VNVDNEKAMELAVLYLAEK--GHKKIAYIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVDGLSA 156 (261)
T ss_pred C------CCCE-EEEChHHHHHHHHHHHHHc--CchhEEEeecccccccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCCH
Confidence 2 3221 12222 2345566666554 3468988865543 124556777777543332232211111
Q ss_pred CCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHHHHH
Q 022234 216 HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAA 267 (300)
Q Consensus 216 ~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta~~l 267 (300)
....+.... + ..+++|+.++-..+...+..+.+.+. .++.+++.+......+
T Consensus 157 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~dv~vvg~d~~~~~~~ 215 (261)
T cd06272 157 EGGDNAAKKLLKESDLPTAIICGSYDIALGVLSALNKQGISIPEDIEIISYDNIPQMAI 215 (261)
T ss_pred HHHHHHHHHHHcCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEeeCChhHHhh
Confidence 111122222 2 24799999998878777777766552 4788999988655443
No 26
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=96.69 E-value=0.074 Score=47.20 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=99.8
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHH
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 144 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 144 (300)
+.+.+++.|+++..++.-.- +...+.+.+....+|+||+++...-....+.+.+ .+.+++++|..... .
T Consensus 32 i~~~~~~~g~~~~v~~~~~~----~~~~~~~~l~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~----~ 100 (275)
T cd06295 32 IADALAERGYDLLLSFVSSP----DRDWLARYLASGRADGVILIGQHDQDPLPERLAE---TGLPFVVWGRPLPG----Q 100 (275)
T ss_pred HHHHHHHcCCEEEEEeCCch----hHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEECCccCC----C
Confidence 56677788988876543111 1123333333467999998775432333333333 46899999875321 2
Q ss_pred hhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeCCC
Q 022234 145 IQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHH 216 (300)
Q Consensus 145 ~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~~ 216 (300)
.+.. +.+..+ .+..+++.|.+. +.++++++.+... ..-+.+.+++.|..+....++.......
T Consensus 101 ------~~~~-V~~d~~~~g~~~a~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 171 (275)
T cd06295 101 ------PYCY-VGSDNVGGGRLATEHLLAR--GRRRIAFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDFTEE 171 (275)
T ss_pred ------CCCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEcCCCCcchhHHHHHHHHHHHHHcCCCCChhhEEeccCCHH
Confidence 2221 223322 345556666554 3468999887543 1346667777775543333332211111
Q ss_pred CcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHH
Q 022234 217 VDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTA 264 (300)
Q Consensus 217 ~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta 264 (300)
........ + .++++|++++...+..+++.+.+.+. .++.++|.+....
T Consensus 172 ~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~~l~~~g~~ip~~i~ii~~d~~~~ 226 (275)
T cd06295 172 SGRAAMRALLERGPDFDAVFAASDLMALGALRALREAGRRVPEDVAVVGFDDIPL 226 (275)
T ss_pred HHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCccceEEEeeCCchH
Confidence 11111221 2 35799999998887777777766542 3678889886543
No 27
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=96.52 E-value=0.071 Score=46.92 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=99.3
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.+..++.. .+.+...+. +....+|.||+++........+.+.+ .+.+++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~ipvV~~~~~~~-- 89 (265)
T cd06299 20 AIQDAASAAGYSTIIGNSD-----ENPETENRYLDNLLSQRVDGIIVVPHEQSAEQLEDLLK---RGIPVVFVDREIT-- 89 (265)
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHhcCCCEEEEcCCCCChHHHHHHHh---CCCCEEEEecccC--
Confidence 4556778889988866532 122211122 23468999999875433323344443 4678999987532
Q ss_pred HHHHhhccCCCccccccCCCCcH-HHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKATG-KILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~~-e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.. ++.. +....+.+ ..+.+.|.+. +.++|+++.+.... .-+.+.++++|..+.....+...
T Consensus 90 --~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 158 (265)
T cd06299 90 --GS------PIPF-VTSDPQPGMTEAVSLLVAL--GHKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGG 158 (265)
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHc--CCCcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecC
Confidence 12 3321 12222222 3334455443 34689998775532 35667788888554332222221
Q ss_pred eCCCCcHHHHHH-cC-CCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 213 PVHHVDQTVLKQ-AL-SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 213 ~~~~~~~~~~~~-l~-~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
.......+.... +. .+++|+.++...+...+..+.+.+. .++.+++++..
T Consensus 159 ~~~~~~~~~~~~~l~~~~~av~~~~d~~a~gv~~al~~~g~~vp~dv~v~g~d~~ 213 (265)
T cd06299 159 YSQESGYAGATKLLDQGATAIIAGDSMMTIGAIRAIHDAGLVIGEDISLIGFDDL 213 (265)
T ss_pred cchHHHHHHHHHHHcCCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEeCCH
Confidence 111111122222 22 3899999999888888887776653 37889999864
No 28
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=96.42 E-value=0.076 Score=46.69 Aligned_cols=183 Identities=10% Similarity=0.053 Sum_probs=99.5
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|+++...+...- ....+.+.+.+....+|+||+++.+.-....+.+.+ .+.+++++|....
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~---- 93 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPD--EDPLEVYRRLVESGLVDGVIISRTRPDDPRVALLLE---RGFPFVTHGRTEL---- 93 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCc--HHHHHHHHHHHHcCCCCEEEEecCCCCChHHHHHHh---cCCCEEEECCcCC----
Confidence 3556677888998877764211 001122333333457999999875422222233332 3678888886431
Q ss_pred HHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 143 EVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
.. .+.. +....+. +...++.|.+. +.++++++.+... ..-+.+.++++|..+....++.....
T Consensus 94 ~~------~~~~-V~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~ 164 (268)
T cd06271 94 GD------PHPW-VDFDNEAAAYQAVRRLIAL--GHRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGDMT 164 (268)
T ss_pred CC------CCCe-EeeCcHHHHHHHHHHHHHc--CCCcEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCCCC
Confidence 12 2221 2233322 34445555543 3478999876543 23455677777766533333332211
Q ss_pred CCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 215 HHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 215 ~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.....+..+. + ..+++|+..+...+..+++.+.+.+. .++.+++++..-
T Consensus 165 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~~i~iig~d~~~ 220 (268)
T cd06271 165 EEGGYAAAAELLALPDRPTAIVCSSELMALGVLAALAEAGLRPGRDVSVVGFDDSP 220 (268)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEecCch
Confidence 1111122222 2 34899999998888777777776553 367788887653
No 29
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=96.36 E-value=0.13 Score=45.32 Aligned_cols=180 Identities=13% Similarity=0.067 Sum_probs=98.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.++++|+.++.... ..+.+. ..+.+.....|++|+++...-....+.+.+ .+++++++|....
T Consensus 19 ~~i~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~l~~---~~iPvv~~~~~~~- 89 (268)
T cd06273 19 QAFQETLAAHGYTLLVASS-----GYDLDREYAQARKLLERGVDGLALIGLDHSPALLDLLAR---RGVPYVATWNYSP- 89 (268)
T ss_pred HHHHHHHHHCCCEEEEecC-----CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEEcCCCC-
Confidence 3567778889988875321 112221 112222357899999876544444444433 3678888886421
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
.. .+.. +....+ .+..+++.|.+. +.+++.++.+... ..-+.+.|+++|+.+....++.
T Consensus 90 ---~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~ 157 (268)
T cd06273 90 ---DS------PYPC-VGFDNREAGRLAARHLIAL--GHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVE 157 (268)
T ss_pred ---CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeee
Confidence 11 2211 122222 244556666654 3578999875431 2345677888886655444443
Q ss_pred eeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 211 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 211 ~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.........+.... + ..+++|+.++...+..+++.+.+.+. .++.+++++..-
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~~~~~~l~~~g~~~p~~i~vig~d~~~ 217 (268)
T cd06273 158 APYSIADGRAALRQLLEQPPRPTAVICGNDVLALGALYEARRLGLSVPEDLSIVGFDDID 217 (268)
T ss_pred CCCcHHHHHHHHHHHHcCCCCCCEEEEcChHHHHHHHHHHHHcCCCCCCceEEEecCChh
Confidence 22111111111112 2 35899999998888888887776542 366788877533
No 30
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.26 E-value=0.13 Score=45.31 Aligned_cols=183 Identities=8% Similarity=0.042 Sum_probs=97.3
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|+++.....-. .......+...+....+|+||+.+...-....+.+.+ .+.++++++.....
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~--- 95 (270)
T cd06294 24 RGISAVANENGYDISLATGKN--EEELLEEVKKMIQQKRVDGFILLYSREDDPIIDYLKE---EKFPFVVIGKPEDD--- 95 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCC--cHHHHHHHHHHHHHcCcCEEEEecCcCCcHHHHHHHh---cCCCEEEECCCCCC---
Confidence 345667788898876432211 0001122333333456999999875433333443433 36789999864311
Q ss_pred HHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 143 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
.. ++.. +....+ .+..+++.|.+. ..++++++.+.... .-+.+.+++.|.......+ .....
T Consensus 96 ~~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~-~~~~~ 165 (270)
T cd06294 96 KE------NITY-VDNDNIQAGYDATEYLIKL--GHKKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVI-ISLDF 165 (270)
T ss_pred CC------CCCe-EEECcHHHHHHHHHHHHHc--CCccEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceE-EecCC
Confidence 01 2221 122222 344556666654 34799999876542 2455677777753221111 11111
Q ss_pred C-CCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 215 H-HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 215 ~-~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
. ....+.... + .++++|+..+...+...+..+.+.+. .++.+++.+..-
T Consensus 166 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~iP~dv~vig~d~~~ 222 (270)
T cd06294 166 SEEGGYKALKKLLEQHPRPTAIVATDDLLALGVLKVLNELGLKVPEDLSIIGFNNSI 222 (270)
T ss_pred chHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEeeCChh
Confidence 1 111111212 2 35899999998888888777776553 367788887653
No 31
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=96.24 E-value=0.066 Score=46.49 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=96.1
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHH-HHHHHHcCCCCceEEEEccchH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVF-LEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~-~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
..+.+.++++|+++...+.-. +.+...+. +....+|.||+.+...-... ...+.+ .+++++.++....
T Consensus 19 ~g~~~~~~~~g~~l~~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~~---~~ip~v~~~~~~~ 90 (264)
T cd01537 19 KGIEEAAKAAGYQVLLANSQN-----DAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARK---AGIPVVLVDRDIP 90 (264)
T ss_pred HHHHHHHHHcCCeEEEEeCCC-----CHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhhh---cCCCEEEeccCCC
Confidence 445566777888776554421 11111111 22357999998775533322 333332 4678888887654
Q ss_pred HHHHHHhhccCCCccccccCC-CCcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCC-CeeEEEEee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTY 209 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G-~~v~~~~vY 209 (300)
. .. .+.. +... ...+..+++.|.+.. .++++++.+... ...+.+.+++.| ..+. ..+
T Consensus 91 ~---~~------~~~~-v~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 156 (264)
T cd01537 91 D---GD------RVPS-VGSDNEQAGYLAGEHLAEKG--HRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIV--LVQ 156 (264)
T ss_pred C---Cc------ccce-EecCcHHHHHHHHHHHHHhc--CCcEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChh--hhc
Confidence 3 11 2111 1222 233456666666542 478988877543 355666777776 2222 222
Q ss_pred eeeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHHH
Q 022234 210 TTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTAS 265 (300)
Q Consensus 210 ~~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta~ 265 (300)
..........+.... + .++|+|+.++...+..+++.+.+.+. .++.+++.+.....
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~g~~i~~~i~i~~~d~~~~~ 219 (264)
T cd01537 157 EGDWDAEKGYQAAEELLTAHPDPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGTPEA 219 (264)
T ss_pred cCCCCHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCCCeEEEeecCccHH
Confidence 211111111111222 2 23889999987777777777766543 35777777654443
No 32
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=96.21 E-value=0.11 Score=45.60 Aligned_cols=187 Identities=17% Similarity=0.133 Sum_probs=100.2
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.++++|+++...+.- .+.+...+. +....+|++|+++..........+.+ .+.+++.+|....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~~dgii~~~~~~~~~~~~~~~~---~~ipvv~~~~~~~- 89 (259)
T cd01542 19 KGILAALYENGYQMLLMNTN-----FSIEKEIEALELLARQKVDGIILLATTITDEHREAIKK---LNVPVVVVGQDYP- 89 (259)
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhc---CCCCEEEEeccCC-
Confidence 34556777889887654321 122211112 23468999999876533333344433 2578999986431
Q ss_pred HHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
.. . . +..+. ..+..+++.|.+. ..++++++.+... ..-+.+.+++.|. ....++.
T Consensus 90 ---~~------~--~-v~~d~~~~~~~~~~~l~~~--g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~--~~~~~~~ 153 (259)
T cd01542 90 ---GI------S--S-VVYDDYGAGYELGEYLAQQ--GHKNIAYLGVSESDIAVGILRKQGYLDALKEHGI--CPPNIVE 153 (259)
T ss_pred ---CC------C--E-EEECcHHHHHHHHHHHHHc--CCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCC--ChHHeee
Confidence 11 1 1 12222 2345556666653 3478998865421 1345677777775 1112222
Q ss_pred eeeCCCCcHHHHHH-cC-C-CCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHHHHHHHcCCCe
Q 022234 211 TEPVHHVDQTVLKQ-AL-S-IPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 211 ~~~~~~~~~~~~~~-l~-~-~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
.........+.... +. . +++|+.++-..+..+++.+.+.+. .++.+++++..-...+..-++..
T Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~~~~~~~~~~~l~t 223 (259)
T cd01542 154 TDFSYESAYEAAQELLEPQPPDAIVCATDTIALGAMKYLQELGRRIPEDISVAGFGGYELSSVVTPSLTT 223 (259)
T ss_pred ccCchhhHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEecCCchhhccccCCceE
Confidence 21111111122222 22 2 799999998888888887776553 36788888865333333335543
No 33
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=96.15 E-value=0.19 Score=44.48 Aligned_cols=219 Identities=14% Similarity=0.045 Sum_probs=111.2
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
..+.+.++++|++++..+.-.- .....+.+.. +....+|+||+.+.+. .....+.+.+ .+++++.++..-..
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~-l~~~~vdgiIi~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~~- 92 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQK-QENQISAIRS-FIAQGVDVIILAPVVETGWDPVLKEAKA---AGIPVILVDRGVDV- 92 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCC-HHHHHHHHHH-HHHcCCCEEEEcCCccccchHHHHHHHH---CCCCEEEEecCcCC-
Confidence 4566778889999987654320 0000011222 2245799999977542 2344444443 36788998853110
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCC-CeeEEEEeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYTT 211 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G-~~v~~~~vY~~ 211 (300)
.... .....+.+..+. +..+++.|.+.....++++++.+... ..-+.+.|++++ ..+ ...+..
T Consensus 93 ~~~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~--~~~~~~ 164 (273)
T cd06309 93 KDDS------LYVTFIGSDFVEEGRRAADWLAKATGGKGNIVELQGTVGSSVAIDRKKGFAEVIKKYPNMKI--VASQTG 164 (273)
T ss_pred ccCc------ceeeEecCChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEE--eeccCC
Confidence 0000 111112233332 33444555554223468999977643 234566777663 322 222221
Q ss_pred eeCCCCcHH----HHHHcC-CCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHH--HHHHHcCCCeEEecCCC
Q 022234 212 EPVHHVDQT----VLKQAL-SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTA--SAAKRLGLKNVYYPTHP 281 (300)
Q Consensus 212 ~~~~~~~~~----~~~~l~-~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta--~~l~~~G~~~~~v~~~p 281 (300)
........+ +++... .+++|+.++-..+...+..+.+.++ .++.+++++.... ..+..-.+..+......
T Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~aI~~~~d~~a~g~~~a~~~~g~~ip~di~iig~d~~~~~~~~~~~~~lt~~~~~~~~ 244 (273)
T cd06309 165 DFTRAKGKEVMEALLKAHGDDIDAVYAHNDEMALGAIQAIKAAGKKPGKDIKIVSIDGTKDAFQAMADGKLNATVECNPL 244 (273)
T ss_pred cccHHHHHHHHHHHHHhCCCCccEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEecCCCHHHHHHHHcCceEEEEecChh
Confidence 111111111 222112 5889998888888777777766553 3688888865543 35555445543333222
Q ss_pred CHHHHHHHHHHHHH
Q 022234 282 GLEGWVDSILEALR 295 (300)
Q Consensus 282 ~~~~l~~ai~~~~~ 295 (300)
--...++.+.+.+.
T Consensus 245 ~g~~a~~~l~~~i~ 258 (273)
T cd06309 245 FGPLAFDTLEKYLA 258 (273)
T ss_pred HHHHHHHHHHHHhc
Confidence 22334555555553
No 34
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=96.02 E-value=0.33 Score=42.55 Aligned_cols=181 Identities=11% Similarity=0.062 Sum_probs=96.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.++++|+.+..... . .+.+.....+ ....+|+||+.+...-....+.+.+ .+.+++++|....
T Consensus 19 ~~i~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~---~~ipvV~~~~~~~- 89 (267)
T cd06283 19 KGIEDVCRAHGYQVLVCNS---D--NDPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAK---NGKPVVLVDRKIP- 89 (267)
T ss_pred HHHHHHHHHcCCEEEEEcC---C--CCHHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhc---CCCCEEEEcCCCC-
Confidence 4556677888988754432 1 1222222222 2467999999875432222333332 3678999987531
Q ss_pred HHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. ++.....-....+..+++.|.+. ..++++++.+... ..-+.+.++++|..+....+...
T Consensus 90 ---~~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~ 158 (267)
T cd06283 90 ---EL------GVDTVTLDNYEAAKEAVDHLIEK--GYERILFVTEPLDEISPRMERYEGFKEALAEHGIGVNEELIEID 158 (267)
T ss_pred ---CC------CCCEEEeccHHHHHHHHHHHHHc--CCCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCcceeEec
Confidence 12 33221111122355666667654 3468888865432 13456677777743322112111
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 212 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
........+..+. + ..+++|+.+|...+..++..+.+.+. .++.+++++...
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~~~ 217 (267)
T cd06283 159 DEDADELDERLRQLLNKPKKKTAIFAANGLILLEVLKALKELGIRIPEDVGLIGFDDTE 217 (267)
T ss_pred ccchHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEEeCCcc
Confidence 1111111112222 2 25899999998888888888776653 367888887653
No 35
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=96.02 E-value=0.23 Score=44.08 Aligned_cols=180 Identities=12% Similarity=0.046 Sum_probs=99.6
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|++++..+..... ...+.+...+.....|+||+++...-....+.+.+ .+.+++++|...
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~~--~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~l~~---~~iPvv~~~~~~----- 88 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSLA--RLKRYLESTTLAYLTDGLLLASYDLTERLAERRLP---TERPVVLVDAEN----- 88 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCcH--HHHHHHHHHHHhcCCCEEEEecCccChHHHHHHhh---cCCCEEEEccCC-----
Confidence 45667788889998876543110 01112222233467999999986433333333333 367899998642
Q ss_pred HHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------------hhHHHHHHHhCCCeeEEEEe
Q 022234 143 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------------SNEIEEGLSNRGFEVVRLNT 208 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------------~~~L~~~L~~~G~~v~~~~v 208 (300)
. ++... ....+ .+...++.|.+. .++++++.+... ..-+.+.+++.|..+....+
T Consensus 89 -~------~~~~v-~~d~~~~g~~a~~~L~~~---~~~i~~i~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~ 157 (269)
T cd06297 89 -P------RFDSF-YLDNRLGGRLAGAYLADF---PGRIGAITVEEEPDRAFRRTVFAERRAGFQQALKDAGRPFSPDLL 157 (269)
T ss_pred -C------CCCEE-EECcHHHHHHHHHHHHHh---CCceEEEeCccccccccccccHHHHHHHHHHHHHHcCCCCChhhE
Confidence 2 22221 22322 344445555554 257777755332 23445677788876544223
Q ss_pred eeeeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 209 YTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 209 Y~~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
+..........+.... + .++++|+..+-..+-.+++.+.+.+. .++.+++++..-
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vP~di~vvg~d~~~ 219 (269)
T cd06297 158 AITDHSEEGGRLAMRHLLEKASPPLAVFASADQQALGALQEAVELGLTVGEDVRVVGFDDHP 219 (269)
T ss_pred EeCCCChhhHHHHHHHHHcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECCch
Confidence 3322111111122222 2 25799999998888888887776652 478899987663
No 36
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=95.87 E-value=0.23 Score=43.86 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=97.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHHH--HHHHHHHHHcCCCCceEEEEccch
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~av--~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
..+.+.++++|+.+..+..-. ..+.+...+.+ ....+|+||+.+...- ....+.+.. .+.+++.++...
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 92 (273)
T cd06310 19 AGAEAAAKELGVKVTFQGPAS---ETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKD---AGIPVVLIDSGL 92 (273)
T ss_pred HHHHHHHHHcCCEEEEecCcc---CCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHH---CCCCEEEecCCC
Confidence 345567788898887654211 11222212222 2457999999765421 223333332 467888887542
Q ss_pred HHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhC-CCeeEEEEe
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNT 208 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~~~v 208 (300)
.. .. .+.. +....+ .+..+++.|.+...+.++++++.+.... .-+.+.++++ |+.+.. .
T Consensus 93 ~~---~~------~~~~-v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~--~ 160 (273)
T cd06310 93 NS---DI------AVSF-VATDNVAAGKLAAEALAELLGKKGKVAVISFVPGSSTTDQREEGFLEGLKEYPGIEIVA--T 160 (273)
T ss_pred CC---Cc------ceEE-EeeChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEe--c
Confidence 11 12 2221 222222 2344555665543234689999765432 3456678877 766543 2
Q ss_pred eeeeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHH
Q 022234 209 YTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT 263 (300)
Q Consensus 209 Y~~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~T 263 (300)
+..........+.... + .++++|++.|...+..+++.+.+.+. .++.+++++...
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~~l~~~g~~~di~vig~d~~~ 220 (273)
T cd06310 161 QYSDSDYAKALDITEDLLTANPDLKGIFGANEGSAVGAARAVRQAGKAGKVKVVGFDASP 220 (273)
T ss_pred ccCCcCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHHHHHHhcCCCCCeEEEEeCCCh
Confidence 2211111111112212 2 35799999999988888888776654 367888887553
No 37
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.83 E-value=0.71 Score=40.40 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=95.5
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.+.+.+++.|++++..+. ..+.+...+.+ ....+|.+|+.+.. ... ..+.+.+ .+++++.++....
T Consensus 20 g~~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~~~~~~---~~ipvV~~~~~~~ 90 (268)
T cd06289 20 GLEEVLEEAGYTVFLANS-----GEDVERQEQLLSTMLEHGVAGIILCPAAGTSPD-LLKRLAE---SGIPVVLVAREVA 90 (268)
T ss_pred HHHHHHHHcCCeEEEecC-----CCChHHHHHHHHHHHHcCCCEEEEeCCCCccHH-HHHHHHh---cCCCEEEEeccCC
Confidence 444667778887654321 11222212222 24678999997643 333 3333333 3678888875431
Q ss_pred HHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
. . ++.. +..+.+ .+...++.|.+. ..++++++.+... ..-+.+.+++.|..+....++.
T Consensus 91 ~----~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~ 157 (268)
T cd06289 91 G----A------PFDY-VGPDNAAGARLATEHLISL--GHRRIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVE 157 (268)
T ss_pred C----C------CCCE-EeecchHHHHHHHHHHHHC--CCCCEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEEe
Confidence 1 1 2221 222322 244455555554 3468888876543 2455667777775443332322
Q ss_pred eeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 211 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 211 ~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.........+..+. + .++++|+.++...+..+++.+.+.+. .++.+++.+...
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~~g~~~p~di~iig~d~~~ 217 (268)
T cd06289 158 GPPSRQGGAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDVA 217 (268)
T ss_pred cCcchhhHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCch
Confidence 21111111122222 2 35899999999888888888876653 367888888754
No 38
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=95.79 E-value=0.27 Score=43.05 Aligned_cols=181 Identities=10% Similarity=0.003 Sum_probs=99.4
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.+++.|+++...+.-. ......++...+.....|+||+.+...-....+.+.+ ..+++.++..+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~--~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~----~~pvv~~~~~~~---- 88 (260)
T cd06286 19 DGIEKAALKHGYKVVLLQTNY--DKEKELEYLELLKTKQVDGLILCSRENDWEVIEPYTK----YGPIVLCEEYDS---- 88 (260)
T ss_pred HHHHHHHHHcCCEEEEEeCCC--ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHhc----CCCEEEEecccC----
Confidence 355667778898887654311 0001111222233467899999775322222333332 237888886532
Q ss_pred HHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 143 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
. ++.. +.++. ..+...++.|.+. +.++++++.+... ..-+.+.|++.|..+....+|.....
T Consensus 89 -~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~i~~~~~~ 158 (260)
T cd06286 89 -K------NISS-VYIDHYEAFYEALKYLIQK--GYRKIAYCIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFEGCFT 158 (260)
T ss_pred -C------CCCE-EEECChHHHHHHHHHHHHC--CCceEEEEcCCcccchhHHHHHHHHHHHHHcCCCCChHheEeCCCC
Confidence 2 4332 22232 2344556666654 3478999987653 23455678888866543323322111
Q ss_pred CCCcHHHHHHc----CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 215 HHVDQTVLKQA----LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 215 ~~~~~~~~~~l----~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.....+..+.+ .++++|++.+-..+..++..+.+.+. .++.+++++...
T Consensus 159 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~ip~di~v~g~d~~~ 214 (260)
T cd06286 159 IEDGERIGHQLLKMKDRPDAIFTGSDEVAAGIITEAKKQGIRVPEDLAIIGFDNQP 214 (260)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEcchHHHHHHHHHHHHcCCCCCcceEEEeecCcc
Confidence 11111222222 36899999999998888888876552 368888887543
No 39
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=95.77 E-value=0.14 Score=47.65 Aligned_cols=181 Identities=9% Similarity=0.009 Sum_probs=109.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|+.++..+.-.- + .......+.+....+|.||+.+...-..+.+.+.+. +.+++.+|....
T Consensus 78 ~gi~~~~~~~gy~~~l~~~~~~-~-~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~---~~P~V~i~~~~~---- 148 (333)
T COG1609 78 KGIEEAAREAGYSLLLANTDDD-P-EKEREYLETLLQKRVDGLILLGERPNDSLLELLAAA---GIPVVVIDRSPP---- 148 (333)
T ss_pred HHHHHHHHHcCCEEEEECCCCC-H-HHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhc---CCCEEEEeCCCc----
Confidence 4556677888999988877551 1 011122233345789999999855555555555543 688999998654
Q ss_pred HHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCee-EEEEeeeeeeC
Q 022234 143 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEV-VRLNTYTTEPV 214 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v-~~~~vY~~~~~ 214 (300)
.. ++..+......-+..+++.|.+. +.+++.++.|... ..-+.+.|+++|..+ ..+.... ...
T Consensus 149 ~~------~~~~V~~Dn~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~-~~~ 219 (333)
T COG1609 149 GL------GVPSVGIDNFAGAYLATEHLIEL--GHRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEG-DFS 219 (333)
T ss_pred cC------CCCEEEEChHHHHHHHHHHHHHC--CCceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEec-CCC
Confidence 23 44332222222345556666654 2478999988731 246778899999876 2222221 111
Q ss_pred CCCcHH-HHHHc---CC-CCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCH
Q 022234 215 HHVDQT-VLKQA---LS-IPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 261 (300)
Q Consensus 215 ~~~~~~-~~~~l---~~-~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~ 261 (300)
.....+ ..+.+ .. +++|++.|-..+-..+..+.+.++ .++.+++.+.
T Consensus 220 ~~~g~~~~~~ll~~~~~~ptAif~~nD~~Alg~l~~~~~~g~~vP~disviGfDd 274 (333)
T COG1609 220 EESGYEAAERLLARGEPRPTAIFCANDLMALGALRALRELGLRVPEDLSVIGFDD 274 (333)
T ss_pred hHHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCeeEEEEecC
Confidence 111111 12222 24 899999999999999887776653 3578888888
No 40
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=95.76 E-value=0.51 Score=41.31 Aligned_cols=178 Identities=10% Similarity=-0.007 Sum_probs=95.7
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCch---hHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~---~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.++++|+.++.+..- .+.. ++.+.+.....|+||+++...-......+ ..+.+++.++....
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~----~~~ipvv~~~~~~~- 88 (267)
T cd06284 19 KGIEDEAREAGYGVLLGDTR-----SDPEREQEYLDLLRRKQADGIILLDGSLPPTALTAL----AKLPPIVQACEYIP- 88 (267)
T ss_pred HHHHHHHHHcCCeEEEecCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHH----hcCCCEEEEecccC-
Confidence 45667788889888654321 1222 11122234679999998754222222222 13678888864321
Q ss_pred HHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. +... +..+. ..+..+++.|.+. +.++++++.+... ..-+.+.++++|+++.....+..
T Consensus 89 ---~~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~ 156 (267)
T cd06284 89 ---GL------AVPS-VSIDNVAAARLAVDHLISL--GHRRIALITGPRDNPLARDRLEGYRQALAEAGLPADEELIQEG 156 (267)
T ss_pred ---CC------Ccce-EEecccHHHHHHHHHHHHc--CCceEEEEcCCccchhHHHHHHHHHHHHHHcCCCCCcceEEeC
Confidence 11 2111 11222 2345566666554 3468988877533 23455678888866543333322
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 212 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
........+..+. + ..+|+|+.+|...+..+...+.+.+. .++.+++++..
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~al~~~g~~~p~~v~v~g~d~~ 214 (267)
T cd06284 157 DFSLESGYAAARRLLALPDRPTAIFCFSDEMAIGAISALKELGLRVPEDISVVGFDDI 214 (267)
T ss_pred CCChHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCccceeEEEeCCH
Confidence 2111111111222 2 35799999998888777777776542 36778888754
No 41
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.75 E-value=0.22 Score=43.80 Aligned_cols=177 Identities=11% Similarity=-0.027 Sum_probs=97.1
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCch---hHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~---~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.+...+.- .+.. +..+.+....+|.||+++...-.. ..... ..+.+++.+|..+..
T Consensus 21 ~i~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~-~~~~~---~~~ipvv~~~~~~~~- 90 (269)
T cd06288 21 GAQDAAREHGYLLLVVNTG-----GDDELEAEAVEALLDHRVDGIIYATMYHREV-TLPPE---LLSVPTVLLNCYDAD- 90 (269)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEecCCCChh-HHHHH---hcCCCEEEEecccCC-
Confidence 4556677889887665431 1211 111122346789999987532111 11111 146789988865421
Q ss_pred HHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
. .+.. +.++. ..+..+++.|.+. +.++++++.+.... .-+.+.++++|.++....++...
T Consensus 91 ---~------~~~~-v~~d~~~~~~~a~~~l~~~--g~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 158 (269)
T cd06288 91 ---G------ALPS-VVPDEEQGGYDATRHLLAA--GHRRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGD 158 (269)
T ss_pred ---C------CCCe-EEEccHHHHHHHHHHHHHc--CCceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 2 2222 22332 2345666666654 34689998776542 23456677777654433333222
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 213 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 213 ~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
.......+..+. + .++|+|+.+|...+..+++.+.+.+. .++.+++.+..
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~v~g~d~~ 215 (269)
T cd06288 159 WSADDGYEAAAALLDLDDRPTAIFCGNDRMAMGAYQALLERGLRIPQDVSVVGFDNQ 215 (269)
T ss_pred CChHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHcCCCCcccceEEeeCCc
Confidence 111111111122 2 35899999999988888887776653 47788888754
No 42
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=95.72 E-value=0.35 Score=42.54 Aligned_cols=179 Identities=9% Similarity=0.040 Sum_probs=100.2
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+++...+... +.+...+. +....+|.|++.+.+.-......+.+ .++++++++....
T Consensus 20 ~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~-- 89 (264)
T cd06274 20 RLEALARERGYQLLIACSDD-----DPETERETVETLIARQVDALIVAGSLPPDDPYYLCQK---AGLPVVALDRPGD-- 89 (264)
T ss_pred HHHHHHHHCCCEEEEEeCCC-----CHHHHHHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh---cCCCEEEecCccC--
Confidence 34466778899887754421 22221222 23467999999876421111233333 3678999987642
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.. ++.. +....+. +..+++.|.+. +.++++++.+... ..-+.+.++++|..+....++...
T Consensus 90 --~~------~~~~-V~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 158 (264)
T cd06274 90 --PS------RFPS-VVSDNRDGAAELTRELLAA--PPEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEG 158 (264)
T ss_pred --CC------CCCE-EEEccHHHHHHHHHHHHHC--CCCcEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecCC
Confidence 12 2222 2223322 34456666653 3478999977654 224556777887655444343332
Q ss_pred eCCCCcHHHHHH-c----CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 213 PVHHVDQTVLKQ-A----LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 213 ~~~~~~~~~~~~-l----~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.......+..+. + ..+++|+..+...+..+++.+.+.+. .++.+++++...
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ip~dv~v~g~d~~~ 217 (264)
T cd06274 159 YSPESGYQLMAELLARLGRLPRALFTTSYTLLEGVLRFLRERPGLAPSDLRIATFDDHP 217 (264)
T ss_pred CChHHHHHHHHHHHccCCCCCcEEEEcChHHHHHHHHHHHHcCCCCCcceEEEEeCCHH
Confidence 111111111122 2 24789999998888888888777653 368899998754
No 43
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.71 E-value=0.22 Score=43.97 Aligned_cols=184 Identities=11% Similarity=0.017 Sum_probs=97.5
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-----HHHHHHHHHHHcCCCCceEEEEccch
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-----av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
..+.+.+++.|+.++..+...- .....+..+.+....+|+||+++.. +.......+.+ .+.+++++|...
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~---~~ipvV~i~~~~ 93 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYRG--GVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAE---RGLPVVLVNGRA 93 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCCC--hHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHh---CCCCEEEEcCCC
Confidence 4566677788988765432110 0011122222334679999997632 22223333333 468899998753
Q ss_pred HHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEee
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY 209 (300)
.. .. .+.. +..+. ..+..+++.|.+. +.++++++.+... ..-+.+.++++|..+....++
T Consensus 94 ~~---~~------~~~~-V~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~ 161 (273)
T cd06292 94 PP---PL------KVPH-VSTDDALAMRLAVRHLVAL--GHRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVA 161 (273)
T ss_pred CC---CC------CCCE-EEECcHHHHHHHHHHHHHC--CCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheE
Confidence 21 12 2222 12222 2344555666554 3468888876532 234556777787544322222
Q ss_pred eeeeCCCCcHHHHHH-c-CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 210 TTEPVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 210 ~~~~~~~~~~~~~~~-l-~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
..........+.... + ..+++|+..+...+..+++.+.+.+. .++.+++++..-
T Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~a~g~~~~l~~~g~~ip~di~ii~~d~~~ 220 (273)
T cd06292 162 RGMFSVEGGQAAAVELLGSGPTAIVAASDLMALGAIRAARRRGLRVPEDVSVVGYDDSA 220 (273)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeeCCch
Confidence 221111111122222 2 24899999988888778887776653 477888887654
No 44
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=95.63 E-value=0.58 Score=41.20 Aligned_cols=179 Identities=7% Similarity=0.006 Sum_probs=97.8
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.++++|+.+...... .+.+...+. +....+|+||+++..--....+.+.+ .+.++++++....
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~-----~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~- 89 (268)
T cd06270 19 SGVESVARKAGKHLIITAGH-----HSAEKEREAIEFLLERRCDALILHSKALSDDELIELAA---QVPPLVLINRHIP- 89 (268)
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CchHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhh---CCCCEEEEeccCC-
Confidence 34556678899998754321 122211122 22468999999864211112333333 3678999986431
Q ss_pred HHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. +... +..+. ..+..+++.|.+. +.++++++.+... ..-+.+.++++|..+....++..
T Consensus 90 ---~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~ 157 (268)
T cd06270 90 ---GL------ADRC-IWLDNEQGGYLATEHLIEL--GHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEG 157 (268)
T ss_pred ---CC------CCCe-EEECcHHHHHHHHHHHHHC--CCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEEC
Confidence 11 2211 22222 2345566666554 3468888876543 22356677888866533223222
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 212 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
........+..+. + ..+++|+.++...+..++..+.+.+. .++.+++++..
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ip~di~v~g~d~~ 215 (268)
T cd06270 158 DFTEEGGYAAMQELLARGAPFTAVFCANDEMAAGAISALREHGISVPQDVSIIGFDDV 215 (268)
T ss_pred CCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceeEEEecCc
Confidence 1111111112222 2 25789999998888888888876552 36789999874
No 45
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.62 E-value=0.28 Score=43.91 Aligned_cols=178 Identities=10% Similarity=0.063 Sum_probs=100.4
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.+++.|+++..++... +.+.+ ..+.....|++|+++........+.+.+ .+++++++|....
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~-~~~~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~---- 90 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASS-----EDSDS-ALVVSALVDGFIVYGVPRDDPLVAALLR---RGLPVVVVDQPLP---- 90 (283)
T ss_pred HHHHHHHHHCCCEEEEecCcc-----HHHHH-HHHHhcCCCEEEEeCCCCChHHHHHHHH---cCCCEEEEecCCC----
Confidence 345677888999998876532 11222 2233568999999875332233333433 3678999986531
Q ss_pred HHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCC------------------------ChhHHHHHHH
Q 022234 143 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK------------------------ASNEIEEGLS 197 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~------------------------~~~~L~~~L~ 197 (300)
. ++.. +.... ..+..+++.|.+. ..+++.++.+.. ...-+.+.++
T Consensus 91 -~------~~~~-v~~d~~~~g~~~~~~L~~~--g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~gf~~~~~ 160 (283)
T cd06279 91 -P------GVPS-VGIDDRAAAREAARHLLDL--GHRRIGILGLRLGRDRNTGRVTDERLASATFSVARERLEGYLEALE 160 (283)
T ss_pred -C------CCCE-EeeCcHHHHHHHHHHHHHc--CCCcEEEecCcccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 2 2221 22222 2345555666554 346888887642 1234566788
Q ss_pred hCCCeeEEEEeeeeeeCC-CCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 198 NRGFEVVRLNTYTTEPVH-HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 198 ~~G~~v~~~~vY~~~~~~-~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
+.|..+....+|...... ....+..+. + .++++|+..+-..+...++.+.+.+. .++.+++++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~gv~~al~~~g~~ip~di~vig~d~~~ 234 (283)
T cd06279 161 EAGIDISDVPIWEIPENDRASGEEAARELLDASPRPTAILCMSDVLALGALQVARELGLRVPEDLSVVGFDGIP 234 (283)
T ss_pred HcCCCCChheEEecCCCchHHHHHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEeeeCCCc
Confidence 888665444444321111 111122222 2 25788888888877777777766543 367888987543
No 46
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=95.59 E-value=0.51 Score=43.04 Aligned_cols=180 Identities=9% Similarity=0.037 Sum_probs=98.6
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.++.++. . .+.+...+. +....+|+||+++...-....+.+.. ..+++++.+|...
T Consensus 77 gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~--~~~iPvV~i~~~~--- 146 (327)
T PRK10423 77 GVERSCFERGYSLVLCNT---E--GDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQR--YPSVPTVMMDWAP--- 146 (327)
T ss_pred HHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhhHHHHHh--cCCCCEEEECCcc---
Confidence 455677788988765432 1 122211122 22467999999875432222222322 1367899998531
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
... .... .....+ .+..+++.|.+. +.++|+++.|... ..-+.+.|+++|..+....++...
T Consensus 147 -~~~------~~~~-v~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~ 216 (327)
T PRK10423 147 -FDG------DSDL-IQDNSLLGGDLATQYLIDK--GYTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGD 216 (327)
T ss_pred -CCC------CCCE-EEEChHHHHHHHHHHHHHc--CCCeEEEEeCCccccchHHHHHHHHHHHHHcCCCCCcceEEeCC
Confidence 111 2211 222222 245556666554 3478999876532 235667788888765432222211
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 213 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 213 ~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.......+.... + ..+++|+.++-..+..+++.+.+.+. .++.+++++...
T Consensus 217 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~vP~dvsvigfd~~~ 274 (327)
T PRK10423 217 FEFNGGFDAMQQLLALPLRPQAVFTGNDAMAVGVYQALYQAGLSVPQDIAVIGYDDIE 274 (327)
T ss_pred CChHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEeCChh
Confidence 111111112222 2 25799999998888888888877652 478899998753
No 47
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.54 E-value=0.25 Score=43.54 Aligned_cols=209 Identities=10% Similarity=0.017 Sum_probs=107.7
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.+++.|+++.....-.-. ....+..+.+....+|+||+++...-....+.+. ..+++++++|.....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~--~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~---~~~ipvV~i~~~~~~--- 90 (270)
T cd06296 19 RGVEEAAAAAGYDVVLSESGRRT--SPERQWVERLSARRTDGVILVTPELTSAQRAALR---RTGIPFVVVDPAGDP--- 90 (270)
T ss_pred HHHHHHHHHcCCeEEEecCCCch--HHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHh---cCCCCEEEEecccCC---
Confidence 34556677888887665432111 0001111122346799999987653222233332 347899999865311
Q ss_pred HHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 143 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
.. ++. .+.++.+ .+....+.|.+. ..+++.++.+.... .-+.+.|++.|..+....++.....
T Consensus 91 ~~------~~~-~v~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~ 161 (270)
T cd06296 91 DA------DVP-SVGATNWAGGLAATEHLLEL--GHRRIGFITGPPDLLCSRARLDGYRAALAEAGIPVDPALVREGDFS 161 (270)
T ss_pred CC------CCC-EEEeCcHHHHHHHHHHHHHc--CCCcEEEEcCCCcchhHHHHHHHHHHHHHHcCCCCChHHheeCCCC
Confidence 01 221 1222222 244455555543 34689988776432 3455667777766543223222211
Q ss_pred CCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHH
Q 022234 215 HHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWV 287 (300)
Q Consensus 215 ~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~ 287 (300)
.....+..+. + ..+++|+..|...+..+++.+.+.+. .++.+++++..- .+..++.....+. .+.+.+.
T Consensus 162 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~~i~v~~~d~~~--~~~~~~~~~~~i~--~~~~~~g 237 (270)
T cd06296 162 TESGFRAAAELLALPERPTAIFAGNDLMALGVYEAARERGLRIPEDLSVVGFDDLP--EARWVSPPLTTVR--QPLREMG 237 (270)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEEECChh--hhcccCCCceEec--CCHHHHH
Confidence 1111111222 2 35799999999988888888877653 367788887543 2333343332333 3444455
Q ss_pred HHHHH
Q 022234 288 DSILE 292 (300)
Q Consensus 288 ~ai~~ 292 (300)
+...+
T Consensus 238 ~~a~~ 242 (270)
T cd06296 238 RAAVR 242 (270)
T ss_pred HHHHH
Confidence 44443
No 48
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=95.54 E-value=0.43 Score=43.63 Aligned_cols=179 Identities=13% Similarity=0.059 Sum_probs=97.2
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHH---hhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSS---VLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~---~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.++.... ..+.+...+ .+....+|+||+.+...-....+.+.+ .+.+++.+|...
T Consensus 80 ~i~~~~~~~g~~~~i~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~--- 148 (329)
T TIGR01481 80 GIEDIATMYKYNIILSNS-----DEDPEKEVQVLNTLLSKQVDGIIFMGGTITEKLREEFSR---SPVPVVLAGTVD--- 148 (329)
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh---cCCCEEEEecCC---
Confidence 344556778988765422 112221112 223467999998765322333333433 357888887642
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
... ++.. +..+.+. +..+++.|.+. +.+++.++.|... ..-+.+.|+++|..+....++..
T Consensus 149 -~~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~ 218 (329)
T TIGR01481 149 -KEN------ELPS-VNIDYKQATKEAVGELIAK--GHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEG 218 (329)
T ss_pred -CCC------CCCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEec
Confidence 112 3322 2233322 34455556553 3468988876432 13355678888877654333322
Q ss_pred eeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 212 EPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 212 ~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
........+..+.+ .++++|+..+-..+..++..+.+.+. .++.+++++...
T Consensus 219 ~~~~~~~~~~~~~ll~~~p~ai~~~~d~~A~g~~~al~~~g~~vP~dvsvvgfd~~~ 275 (329)
T TIGR01481 219 KYSYDAGYKAFAELKGSLPTAVFVASDEMAAGILNAAMDAGIKVPEDLEVITSNNTR 275 (329)
T ss_pred CCChHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeeCCch
Confidence 21111111222222 35799999998888788887776653 478888888654
No 49
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=95.45 E-value=1 Score=39.67 Aligned_cols=187 Identities=10% Similarity=0.011 Sum_probs=97.2
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchh----HHHhhhcCCccEEEEeCh--HHHHHHHHHHHHcCCCCceEEEEccc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDR----LSSVLNDTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~----l~~~l~~~~~d~ivFTS~--~av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
..+.+.++++|+++...+. . .+.+. ++..+ ...+|+||+.+. .......+.+.+ .++++++++..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~l~~~~-~~~vdgii~~~~~~~~~~~~i~~~~~---~~ipvV~~~~~ 89 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDA---G--GDDAKQADQIDQAI-AQKVDAIIIQHGRAEVLKPWVKRALD---AGIPVVAFDVD 89 (273)
T ss_pred HHHHHHHHHcCCEEEEECC---C--CCHHHHHHHHHHHH-HcCCCEEEEecCChhhhHHHHHHHHH---cCCCEEEecCC
Confidence 4556778889998876432 1 12221 22222 357999999764 333444444444 36788888865
Q ss_pred hHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCC-CeeEEEEe
Q 022234 137 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRG-FEVVRLNT 208 (300)
Q Consensus 137 Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G-~~v~~~~v 208 (300)
... . ++.. +..+.+ .+...++.|.+.....++|+++.+... ..-+.+.+++.| ..+.....
T Consensus 90 ~~~----~------~~~~-V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~ 158 (273)
T cd06305 90 SDN----P------KVNN-TTQDDYSLARLSLDQLVKDLGGKGNVGYVNVAGFPPLDRRYDVWQAVLKAYPGIKEVAELG 158 (273)
T ss_pred CCC----C------ccce-eeechHHHHHHHHHHHHHHhCCCCCEEEEEccCCchHHHHHHHHHHHHHHCCCcEEecccc
Confidence 321 2 2221 122222 234455555553223468888875421 124556677666 44322111
Q ss_pred eeeeeCCCCcHH----HHHHcCCC--CEEEEEChHHHHHHHHHhcccCCC-CceEEEeC--HHHHHHHHH
Q 022234 209 YTTEPVHHVDQT----VLKQALSI--PVVAVASPSAVRSWVNLISDTEQW-SNSVACIG--ETTASAAKR 269 (300)
Q Consensus 209 Y~~~~~~~~~~~----~~~~l~~~--d~IvftS~s~v~~~~~~~~~~~~~-~~~vv~IG--~~Ta~~l~~ 269 (300)
...........+ ++....++ ++|+..+...+...+..+.+.+.. ++.+++++ +.+.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~di~iig~d~~~~~~~~i~~ 228 (273)
T cd06305 159 DVSNNTAQDAAAQVEAVLKKYPKGGIDAIWAAWDEFAKGAKQALDEAGRTDEIKIYGVDISPEDLQLMRE 228 (273)
T ss_pred cccccchhHHHHHHHHHHHHCCCcccCeEEEcChhhhHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHc
Confidence 010001111111 22212346 888888887888777777776543 67888886 444555554
No 50
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=95.45 E-value=0.31 Score=44.58 Aligned_cols=176 Identities=12% Similarity=0.123 Sum_probs=95.8
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCch---hHHHhhhcCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNDTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~---~l~~~l~~~~~d~ivFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
.+.+.++++|+.+...... .+.+ +..+.+....+|.||+.+... ...+...+.+ .+.+++++|...
T Consensus 82 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~v~~~~-- 151 (328)
T PRK11303 82 YLERQARQRGYQLLIACSD-----DQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRLQN---DGLPIIALDRAL-- 151 (328)
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHHHh---cCCCEEEECCCC--
Confidence 3445667789887654321 1222 111222346799999976431 1223333333 367899998753
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
... ++.. +..+.+ .+..+++.|.+. ..++|+++.+... ..-+.+.|+++|..+.. +|..
T Consensus 152 --~~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~r~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~--~~~~ 218 (328)
T PRK11303 152 --DRE------HFTS-VVSDDQDDAEMLAESLLKF--PAESILLLGALPELSVSFEREQGFRQALKDDPREVHY--LYAN 218 (328)
T ss_pred --CCC------CCCE-EEeCCHHHHHHHHHHHHHC--CCCeEEEEeCccccccHHHHHHHHHHHHHHcCCCceE--EEeC
Confidence 122 3332 223332 334455556554 3478999977542 23566788888875432 2221
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 212 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
........+..+. + ..+++|+.++-..+...+..+.+.+. .++.+++++..
T Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~disv~gfd~~ 276 (328)
T PRK11303 219 SFEREAGAQLFEKWLETHPMPDALFTTSYTLLQGVLDVLLERPGELPSDLAIATFGDN 276 (328)
T ss_pred CCChHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEeCCh
Confidence 1111111112222 2 25899999998877777777666542 37788888764
No 51
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=95.45 E-value=0.49 Score=41.58 Aligned_cols=184 Identities=11% Similarity=0.075 Sum_probs=96.4
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEccchHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASIF 141 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 141 (300)
..+.+.++++|+++.....-.-.. .....+.+.+....+|+||+++.+. .....+.+.+ .+.+++.+|.....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~---~~ipvv~i~~~~~~-- 92 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSP-DLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDE---AGVPYVRIAPGTPD-- 92 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCch-HHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHh---cCCCEEEEecCCCC--
Confidence 345567788898887654321100 0011222333346799999987642 2333333333 46789999865311
Q ss_pred HHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCChh-------HHHHHHHhCCCeeEEEEeeeeee
Q 022234 142 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASN-------EIEEGLSNRGFEVVRLNTYTTEP 213 (300)
Q Consensus 142 ~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~~-------~L~~~L~~~G~~v~~~~vY~~~~ 213 (300)
. .+.. +..+.+ .+...++.|.+. +.++++++.+..... -+.+.+++.|..+.....+....
T Consensus 93 --~------~~~~-V~~d~~~~g~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~ 161 (270)
T cd01545 93 --P------DSPC-VRIDDRAAAREMTRHLIDL--GHRRIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDF 161 (270)
T ss_pred --C------CCCe-EEeccHHHHHHHHHHHHHC--CCceEEEEeCCCCchhHHHHHHHHHHHHHHcCCCCChhhEEeCCC
Confidence 1 2111 112222 234455555553 357898887665422 24556677776552211222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 214 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 214 ~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
......+..+. + .++++|+.++...+..++..+.+.+. .++.+++++...
T Consensus 162 ~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~~~~~~g~~~p~~i~vig~d~~~ 218 (270)
T cd01545 162 TFESGLEAAEALLALPDRPTAIFASNDDMAAGVLAVAHRRGLRVPDDLSVVGFDDTP 218 (270)
T ss_pred ChhhHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECChh
Confidence 11111112222 2 35799999888888788887776542 356777777653
No 52
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.36 E-value=0.34 Score=39.24 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=70.7
Q ss_pred CCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHHH
Q 022234 177 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWVN 244 (300)
Q Consensus 177 ~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-----s~v~~~~~ 244 (300)
+.++++.+-.. +...+.-.|+..|++|..+-. ..+.+++.+.. .++|+|.+++. ..++.+.+
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~------~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~ 76 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGV------MTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLRE 76 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHH
Confidence 35666665443 344566678899977744332 11222333332 46777777652 34555666
Q ss_pred HhcccCCCCceEEEeCHH---------HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 245 LISDTEQWSNSVACIGET---------TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 245 ~~~~~~~~~~~vv~IG~~---------Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
.+++....++++++-|.. ..+.++++|+..++-+. -+.+.+++.|.++++.
T Consensus 77 ~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~-~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 77 KCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPG-TDPEEAIDDLKKDLNQ 136 (137)
T ss_pred HHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcC-CCHHHHHHHHHHHhcc
Confidence 666554457788877754 23589999998866444 4999999999988754
No 53
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.34 E-value=0.6 Score=40.98 Aligned_cols=178 Identities=9% Similarity=0.008 Sum_probs=96.5
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.++..+.. .+.+...+. +....+|.+|+.+...-......+. .+.+++.+|....
T Consensus 20 gi~~~~~~~gy~~~~~~~~-----~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~----~~iPvV~i~~~~~-- 88 (265)
T cd06290 20 GMERGLNGSGYSPIIATGH-----WNQSRELEALELLKSRRVDALILLGGDLPEEEILALA----EEIPVLAVGRRVP-- 88 (265)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHh----cCCCEEEECCCcC--
Confidence 4456778899888775431 122222222 2346799999886432222222221 3688999997531
Q ss_pred HHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.. ++.. +.... ..+...++.|.+. +.+++.++.+.... .-+.+.+.+.|..+....++...
T Consensus 89 --~~------~~~~-V~~d~~~a~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~ 157 (265)
T cd06290 89 --GP------GAAS-IAVDNFQGGYLATQHLIDL--GHRRIAHITGPRGHIDARDRLAGYRKALEEAGLEVQPDLIVQGD 157 (265)
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEeCccccchhhHHHHHHHHHHHHcCCCCCHHHEEecC
Confidence 12 3221 12222 2234555566554 34689888776432 23455666777654332222211
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 213 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 213 ~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.......+..+. + .++++|+.++...+..+++.+.+.+. .++.+++++...
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~aii~~~~~~a~~~~~~l~~~g~~ip~di~vi~~d~~~ 215 (265)
T cd06290 158 FEEESGLEAVEELLQRGPDFTAIFAANDQTAYGARLALYRRGLRVPEDVSLIGFDDLP 215 (265)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEeeecCch
Confidence 111111112222 2 35799999999988888888777653 467888887543
No 54
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.31 E-value=0.5 Score=41.54 Aligned_cols=177 Identities=12% Similarity=0.070 Sum_probs=96.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHH---hhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSS---VLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~---~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.++++|+.++..+. ..+.+...+ .+....+|.|++.+...-......+.+ .+++++++|....
T Consensus 19 ~gi~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~---~~iPvv~~~~~~~- 89 (265)
T cd06285 19 EGIEEAAAERGYSTFVANT-----GDNPDAQRRAIEMLLDRRVDGLILGDARSDDHFLDELTR---RGVPFVLVLRHAG- 89 (265)
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHH---cCCCEEEEccCCC-
Confidence 3566778888988654332 112221112 223567999998764432223333433 3678999997531
Q ss_pred HHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. . . +.... ..+...++.|.+. ..++++++.+... ..-+.+.+++.|..+....++..
T Consensus 90 ---~~------~--~-V~~d~~~ag~~a~~~L~~~--g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~ 155 (265)
T cd06285 90 ---TS------P--A-VTGDDVLGGRLATRHLLDL--GHRRIAVLAGPDYASTARDRLAGFRAALAEAGIEVPPERIVYS 155 (265)
T ss_pred ---CC------C--E-EEeCcHHHHHHHHHHHHHC--CCccEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeC
Confidence 12 1 1 12222 2344556666554 3468888877553 23455667778866533222221
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 212 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
........+..+. + .++++|+.++...+..+++.+.+.+. .++.+++.+..
T Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~ 213 (265)
T cd06285 156 GFDIEGGEAAAEKLLRSDSPPTAIFAVNDFAAIGVMGAARDRGLRVPDDVALVGYNDI 213 (265)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 1111111112222 2 25799999999998888888877653 36778887764
No 55
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.27 E-value=0.68 Score=40.85 Aligned_cols=177 Identities=11% Similarity=0.061 Sum_probs=97.1
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHH---hhhcCCccEEEEeChHHH-HHHHHHHHHcCCCCceEEEEccchH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSS---VLNDTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~---~l~~~~~d~ivFTS~~av-~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
..+.+.++++|++++..... .+.+...+ .+.....|+||+.+.+.- ..+.+.+.+ .+.+++.+|....
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~---~~ipvV~i~~~~~ 90 (269)
T cd06281 19 SGAEDRLRAAGYSLLIANSL-----NDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALAS---LDLPIVLLDRDMG 90 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHh---CCCCEEEEecccC
Confidence 34557788889998765331 12221112 223467999999875321 333344443 3678999986542
Q ss_pred HHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
. .+.. +....+ .+..+++.|.+. +.++++++++... ..-+.+.++++|..+.....|.
T Consensus 91 -----~------~~~~-V~~d~~~~g~~a~~~l~~~--G~~~i~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~ 156 (269)
T cd06281 91 -----G------GADA-VLFDHAAGMRQAVEYLISL--GHRRIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALVRL 156 (269)
T ss_pred -----C------CCCE-EEECcHHHHHHHHHHHHHC--CCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCHHHeec
Confidence 2 2221 122222 234455556543 3468999977542 1345677888887653222222
Q ss_pred eeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 211 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 211 ~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
... .....+..+. + ..+|+|+.+|-..+...+..+.+.+. .++.+++.+..
T Consensus 157 ~~~-~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ip~dv~iig~d~~ 214 (269)
T cd06281 157 STP-AASGFDATRALLALPDRPTAIIAGGTQVLVGVLRALREAGLRIPRDLSVISIGDS 214 (269)
T ss_pred CcH-HHHHHHHHHHHHcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEEecCc
Confidence 111 1111112222 2 35799999888888777777776553 36788888743
No 56
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=95.16 E-value=1 Score=39.50 Aligned_cols=179 Identities=9% Similarity=0.030 Sum_probs=95.7
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHH---hhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSS---VLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~---~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.+++.|+++...+. . .+.+...+ .+.....|+||+++...-......+.+ ..+.+++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~--~~~ipvV~i~~~~~-- 90 (269)
T cd06275 20 GVEQYCYRQGYNLILCNT---E--GDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLER--YRHIPMVVMDWGPE-- 90 (269)
T ss_pred HHHHHHHHcCCEEEEEeC---C--CChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHh--cCCCCEEEEecccC--
Confidence 345667778988764321 1 12222222 223467899999875432222222322 13688999987532
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.. ++.. +....+ .++.+++.|.+. +.++++++.+.... .-+.+.++++|..+.....+...
T Consensus 91 --~~------~~~~-V~~d~~~~~~~~~~~l~~~--G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~ 159 (269)
T cd06275 91 --DD------FADK-IQDNSEEGGYLATRHLIEL--GHRRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGD 159 (269)
T ss_pred --CC------CCCe-EeeCcHHHHHHHHHHHHHC--CCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCC
Confidence 12 2221 122222 234455666554 34789998765432 34566777787665322222211
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 213 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 213 ~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
.......+..+. + .++++|+.+|...+..+++.+.+.+. .++.+++++..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vvg~d~~ 216 (269)
T cd06275 160 FECEGGYEAMQRLLAQPKRPTAVFCGNDLMAMGALCAAQEAGLRVPQDLSIIGYDDI 216 (269)
T ss_pred CChHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCcceEEEEeCCh
Confidence 111111112222 2 25799999998888888887776553 36788888754
No 57
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=95.08 E-value=0.34 Score=42.86 Aligned_cols=181 Identities=9% Similarity=0.010 Sum_probs=95.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccch
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
..+.+.++++|+++..+..- ...+.....+. +.....|+||+.... .+....+.+.+ .+++++.+|...
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 92 (275)
T cd06320 19 EGYENEAKKLGVSVDIQAAP---SEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKK---KGIPVVNVNDKL 92 (275)
T ss_pred HHHHHHHHHhCCeEEEEccC---CCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHH---CCCeEEEECCCC
Confidence 34557788889887754332 11121111112 223578999886532 23334444443 367899998753
Q ss_pred HHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhC-CCeeEEEEe
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRLNT 208 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~-G~~v~~~~v 208 (300)
.. . ... .+....+ .+..+.+.|.+...+.++++++.+... ..-+.+.++++ |..+.....
T Consensus 93 ~~----~------~~~-~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~ 161 (275)
T cd06320 93 IP----N------ATA-FVGTDNKANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQP 161 (275)
T ss_pred CC----c------cce-EEecCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecC
Confidence 11 1 111 1222322 245555566554323468998876432 24567788888 876543211
Q ss_pred eeeeeCCCCcH-H---HHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHH
Q 022234 209 YTTEPVHHVDQ-T---VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 262 (300)
Q Consensus 209 Y~~~~~~~~~~-~---~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~ 262 (300)
+ ........ . +++...++++|+..+-..+..+++.+.+.+. .++.+++++..
T Consensus 162 ~--~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~~di~vig~d~~ 218 (275)
T cd06320 162 A--DWDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVKNAGKQGKVLVVGTDGI 218 (275)
T ss_pred C--CccHHHHHHHHHHHHHhCCCccEEEECCchhHHHHHHHHHhcCCCCCeEEEecCCC
Confidence 1 11111111 1 1221235889999888888888887776543 26677776543
No 58
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=95.06 E-value=0.97 Score=39.87 Aligned_cols=160 Identities=18% Similarity=0.052 Sum_probs=85.9
Q ss_pred cCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCC
Q 022234 99 DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGK 175 (300)
Q Consensus 99 ~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~ 175 (300)
....|.||+.+.. ......+.+.+ .++++++++..... . ++. .+.++.+ .+..+++.|.+...
T Consensus 58 ~~~vdgiIi~~~~~~~~~~~l~~~~~---~~iPvv~~~~~~~~----~------~~~-~v~~d~~~~g~~~~~~l~~~~~ 123 (272)
T cd06300 58 AQGVDAIIINPASPTALNPVIEEACE---AGIPVVSFDGTVTT----P------CAY-NVNEDQAEFGKQGAEWLVKELG 123 (272)
T ss_pred HcCCCEEEEeCCChhhhHHHHHHHHH---CCCeEEEEecCCCC----C------cee-EecCCHHHHHHHHHHHHHHHcC
Confidence 4589999997643 33433444443 36789988754211 1 111 1222322 24455556655433
Q ss_pred CCCEEEEEcCCCC-------hhHHHHHHHhCC-CeeEEEEeeeeeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHH
Q 022234 176 KKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWV 243 (300)
Q Consensus 176 ~~~~vL~~rg~~~-------~~~L~~~L~~~G-~~v~~~~vY~~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~ 243 (300)
+.++++++.|... ..-+.+.+.++| .++.. ++..........+.... + .++++|+..+.. +-..+
T Consensus 124 g~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~-A~g~~ 200 (272)
T cd06300 124 GKGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIVG--EVYGDWDQAVAQKAVADFLASNPDVDGIWTQGGD-AVGAV 200 (272)
T ss_pred CCceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEEe--ecCCCCCHHHHHHHHHHHHHhCCCcCEEEecCCC-cHHHH
Confidence 4578999976432 234667777776 66542 11111111111112222 2 357899999888 77787
Q ss_pred HHhcccCCCCceEEEeCHHHHHH---HHHcCCCeE
Q 022234 244 NLISDTEQWSNSVACIGETTASA---AKRLGLKNV 275 (300)
Q Consensus 244 ~~~~~~~~~~~~vv~IG~~Ta~~---l~~~G~~~~ 275 (300)
+.+.+.+.....+++++...... +..-++..+
T Consensus 201 ~al~~~g~~~p~v~g~d~~~~~~~~~~~~~~ltti 235 (272)
T cd06300 201 QAFEQAGRDIPPVTGEDENGFLRWRLWKDKGLKGI 235 (272)
T ss_pred HHHHHcCCCCcEEEeeCCcHHHHHHhhhccCceeE
Confidence 87776654334667777664433 444456543
No 59
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=95.04 E-value=0.53 Score=40.79 Aligned_cols=177 Identities=11% Similarity=0.056 Sum_probs=92.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCch----hHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~----~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
.+.+.++++|+++...+. ..+.+ .++. +....+|.|++.....-......+.+ .+++++.++.....
T Consensus 20 g~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~d~iii~~~~~~~~~~~~~~~---~~ipvv~~~~~~~~ 90 (264)
T cd06267 20 GIEEAAREAGYSVLLCNS-----DEDPEKEREALEL-LLSRRVDGIILAPSRLDDELLEELAA---LGIPVVLVDRPLDG 90 (264)
T ss_pred HHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHH-HHHcCcCEEEEecCCcchHHHHHHHH---cCCCEEEecccccC
Confidence 445556677877765433 11221 1222 22457999998776533222333333 46788888765322
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
. .+.. +..... .+..+++.|.+. +.++++++.+... ...+.+.+++.|..+....++..
T Consensus 91 ----~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~ 157 (264)
T cd06267 91 ----L------GVDS-VGIDNRAGAYLAVEHLIEL--GHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEG 157 (264)
T ss_pred ----C------CCCE-EeeccHHHHHHHHHHHHHC--CCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEec
Confidence 2 2221 122222 234455666554 3478999876654 23456777777754433333222
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 212 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
............. + .++|+|+..+...+..+...+.+.+. .++.+++++..
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~~g~~~~~~i~i~~~d~~ 215 (264)
T cd06267 158 DFSEESGYEAARELLASGERPTAIFAANDLMAIGALRALRELGLRVPEDVSVVGFDDI 215 (264)
T ss_pred ccchhhHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEeeCCC
Confidence 2111111111211 2 34899998887777777776665542 35677777543
No 60
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.03 E-value=0.41 Score=41.87 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=95.2
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
.+.+.++++|+.+..+..-. ..+..+..+.+.....|.||+.+...-....+.+.+ .+.+++.+|..+..
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~---~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~---- 89 (266)
T cd06278 20 ALSRALQARGYQPLLINTDD---DEDLDAALRQLLQYRVDGVIVTSGTLSSELAEECRR---NGIPVVLINRYVDG---- 89 (266)
T ss_pred HHHHHHHHCCCeEEEEcCCC---CHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhh---cCCCEEEECCccCC----
Confidence 45677888999887554321 001111111122467999999765322222333333 36789999875421
Q ss_pred HhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeCC
Q 022234 144 VIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 215 (300)
Q Consensus 144 ~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~ 215 (300)
. .+.. +..+. ..+..+++.|.+. +.++++++.+... ..-+.+.+++.|..+.. ..+......
T Consensus 90 ~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~-~~~~~~~~~ 159 (266)
T cd06278 90 P------GVDA-VCSDNYEAGRLAAELLLAK--GCRRIAFIGGPADTSTSRERERGFRDALAAAGVPVVV-EEAGDYSYE 159 (266)
T ss_pred C------CCCE-EEEChHHHHHHHHHHHHHC--CCceEEEEcCCCcccchHHHHHHHHHHHHHcCCChhh-hccCCCCHH
Confidence 1 2211 22222 2345556666654 3469999987654 23456677777765321 111110000
Q ss_pred CCcHHHHHHc---CCCCEEEEEChHHHHHHHHHhccc-CC---CCceEEEeCHHH
Q 022234 216 HVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDT-EQ---WSNSVACIGETT 263 (300)
Q Consensus 216 ~~~~~~~~~l---~~~d~IvftS~s~v~~~~~~~~~~-~~---~~~~vv~IG~~T 263 (300)
.....+.+.+ .++++|+.++...+...++.+.+. .. .++.+++++..-
T Consensus 160 ~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~l~~~~~~~~p~di~i~~~d~~~ 214 (266)
T cd06278 160 GGYEAARRLLASRPRPDAIFCANDLLAIGVMDAARQEGGLRVPEDVSVIGFDDIP 214 (266)
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhcCCCCccceEEEEeCChh
Confidence 0011111112 357999999988877777777653 21 367888886543
No 61
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=94.99 E-value=0.64 Score=42.72 Aligned_cols=179 Identities=13% Similarity=0.109 Sum_probs=96.6
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
+.+.++++|+.++..+. ..+.+..... +....+|+||+.+... .....+.+.+ .+++++.++...
T Consensus 86 i~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~~~~~~--- 154 (342)
T PRK10014 86 LTEALEAQGRMVFLLQG-----GKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEE---KGIPVVFASRAS--- 154 (342)
T ss_pred HHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhh---cCCCEEEEecCC---
Confidence 45667788987754322 1122222222 2346799999987542 2333343433 367888887642
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
... ++.. +..+.+ .+..+.+.|.+. +.++|+++.|.... .-+.+.|++.|..+....++...
T Consensus 155 -~~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 224 (342)
T PRK10014 155 -YLD------DVDT-VRPDNMQAAQLLTEHLIRN--GHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECT 224 (342)
T ss_pred -CCC------CCCE-EEeCCHHHHHHHHHHHHHC--CCCEEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCC
Confidence 112 3221 222332 234455666554 34699999775431 23567788888765443332211
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---C---------CceEEEeCHHHH
Q 022234 213 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---W---------SNSVACIGETTA 264 (300)
Q Consensus 213 ~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~---------~~~vv~IG~~Ta 264 (300)
.......+.... + .++++|+..+-..+-..+..+.+.+. . ++.+++++....
T Consensus 225 ~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~~l~~~g~~vp~~~~~~~~p~di~vigfd~~~~ 292 (342)
T PRK10014 225 SSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLRAGRQSGESGVDRYFEQQVALAAFTDVPE 292 (342)
T ss_pred CChHHHHHHHHHHHcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCccccccccCceEEEEecCchH
Confidence 111111112222 2 35799999998888777776665442 2 678888877543
No 62
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=94.96 E-value=0.69 Score=40.52 Aligned_cols=180 Identities=11% Similarity=0.009 Sum_probs=95.7
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|+.+..+..-.- ......++.+.+.....|++++.+.+.-........ ..+.+++++|....
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~---~~~ipvv~~~~~~~---- 90 (264)
T cd01574 19 AAIESAAREAGYAVTLSMLAEA-DEEALRAAVRRLLAQRVDGVIVNAPLDDADAALAAA---PADVPVVFVDGSPS---- 90 (264)
T ss_pred HHHHHHHHHCCCeEEEEeCCCC-chHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHH---hcCCCEEEEeccCC----
Confidence 4466677788888765532110 000111121222346799999877543222112222 23688999987642
Q ss_pred HHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 143 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
. ++.. +.... ..+...++.|.+. +.++++++.+.... .-+.+.|++.|..+... +.....
T Consensus 91 -~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~--~~~~~~ 158 (264)
T cd01574 91 -P------RVST-VSVDQEGGARLATEHLLEL--GHRTIAHVAGPEEWLSARARLAGWRAALEAAGIAPPPV--LEGDWS 158 (264)
T ss_pred -C------CCCE-EEeCcHHHHHHHHHHHHHC--CCCEEEEEecCCccchHHHHHHHHHHHHHHCCCCccee--eecCCC
Confidence 2 2221 22222 2345556666654 35789999776541 24666777777665321 211111
Q ss_pred CCCcHHHHHHc---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 215 HHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 215 ~~~~~~~~~~l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
.....+..+.+ .++++|+.++...+...+..+.+.+. .++.+++++..
T Consensus 159 ~~~~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~~~~~~g~~ip~~i~ii~~d~~ 212 (264)
T cd01574 159 AESGYRAGRELLREGDPTAVFAANDQMALGVLRALHELGLRVPDDVSVVGFDDI 212 (264)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHcCCCCccceEEecccCc
Confidence 11111122222 23789999888888777777766552 36788888754
No 63
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=94.93 E-value=0.6 Score=41.15 Aligned_cols=180 Identities=12% Similarity=0.049 Sum_probs=95.4
Q ss_pred HHHHHHHh-CCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccch
Q 022234 64 KLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 64 ~l~~~L~~-~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
.+.+.+++ .|++++..... .+.+...+.+ .....|++|+.+.. ........+.+ .+++++.+|...
T Consensus 20 gi~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~---~~iPvv~~~~~~ 91 (272)
T cd06301 20 AMKEHAKVLGGVELQFEDAK-----NDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANA---AGIPLVYVNRRP 91 (272)
T ss_pred HHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHH---CCCeEEEecCCC
Confidence 45556677 78887765431 1222222222 23578999987654 23334444433 367899998753
Q ss_pred HHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEee
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY 209 (300)
... .. ++.. +..+. ..+..+++.|.++....++++++.|... ..-+.+.|+++| .+....++
T Consensus 92 ~~~--~~------~~~~-V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~-~~~~~~~~ 161 (272)
T cd06301 92 ENA--PK------GVAY-VGSDEVVAGRLQAEYVADKLGGKGNVAILMGPLGQSAQIDRTKGVEEVLAKYP-DIKVVEEQ 161 (272)
T ss_pred CCC--CC------eeEE-EecChHHHHHHHHHHHHHHhCCCccEEEEECCCCCccHHHHHHHHHHHHHHCC-CcEEEecC
Confidence 211 12 2221 12222 2344555666554222358999977643 245667788877 33333332
Q ss_pred eeeeCCCCcHH----HHHHcCCCCEEEEEChHHHHHHHHHhcccCC--CCceEEEeCH
Q 022234 210 TTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ--WSNSVACIGE 261 (300)
Q Consensus 210 ~~~~~~~~~~~----~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~--~~~~vv~IG~ 261 (300)
..........+ +++...++++|+..+...+...++.+.+.+. .++.+++++.
T Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~~di~ivg~d~ 219 (272)
T cd06301 162 TANWSRAEAMDLMENWLSSGGKIDAVVANNDEMALGAIMALKAAGKSDKDVPVAGIDG 219 (272)
T ss_pred CCCccHHHHHHHHHHHHHhCCCCCEEEECCCchHHHHHHHHHHcCCCCCCcEEEeeCC
Confidence 22111111111 1211235799999888888777777776553 2678888854
No 64
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=94.91 E-value=0.55 Score=43.18 Aligned_cols=180 Identities=9% Similarity=0.014 Sum_probs=98.0
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHH---hhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSS---VLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~---~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|++++.++.. .+.+...+ .+.....|+||+.....-....+.+.+ ..+++++.+|...
T Consensus 80 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~--~~~iPvV~~d~~~--- 149 (341)
T PRK10703 80 AVEKNCYQKGYTLILCNAW-----NNLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGE--- 149 (341)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHh--cCCCCEEEEeccc---
Confidence 4555677789887755431 12221112 223467999998764322233344433 1367899998532
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
... ++.....+..+ .+...++.|.+. ..++++++.+.... .-+.+.|+++|..+....++...
T Consensus 150 -~~~------~~~~~v~~d~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~~~~~ 220 (341)
T PRK10703 150 -AKA------DFTDAIIDNAFEGGYLAGRYLIER--GHRDIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQGD 220 (341)
T ss_pred -CCc------CCCCeEEECcHHHHHHHHHHHHHC--CCCcEEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHeEeCC
Confidence 111 21111223322 245556666554 34689998765432 34566788888766443222221
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 213 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 213 ~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
.......+..+. + ..+|+|++++...+...++.+.+.+. .++.+++++..
T Consensus 221 ~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~ip~dv~vvgfD~~ 277 (341)
T PRK10703 221 FEPESGYEAMQQILSQKHRPTAVFCGGDIMAMGAICAADEMGLRVPQDISVIGYDNV 277 (341)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEECCC
Confidence 111111112222 2 35899999999988888888877652 37788888764
No 65
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=94.79 E-value=0.8 Score=40.02 Aligned_cols=177 Identities=11% Similarity=0.012 Sum_probs=95.5
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHHH-HHHHHHHHHcCCCCceEEEEccchHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
.+.+.++++|+.+...+.- .+.+. ..+.+....+|+||+.+.+.. ..+.+.+.+ .+++++.++....
T Consensus 20 ~i~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~- 90 (266)
T cd06282 20 GIQEEARAAGYSLLLATTD-----YDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDA---ERVPYVLAYNDPQ- 90 (266)
T ss_pred HHHHHHHHCCCEEEEeeCC-----CCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhh---CCCCEEEEeccCC-
Confidence 4556778889998876541 12221 112222467999999765421 223444433 3678888875432
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
. ++.. +....+ .+..+++.|.+. ..++++++.+... ..-+.+.|+++|..+.....+.
T Consensus 91 ----~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~ 157 (266)
T cd06282 91 ----P------GRPS-VSVDNRAAARDVAQALAAL--GHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLPPVEIP 157 (266)
T ss_pred ----C------CCCE-EeeCcHHHHHHHHHHHHHc--CcccEEEeccccccCchHHHHHHHHHHHHHHcCCCCCccccCC
Confidence 2 2221 222222 244555666554 3468888865421 1334567778886643322111
Q ss_pred eeeCCCCcHHHHHHc---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 211 TEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 211 ~~~~~~~~~~~~~~l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.. .......+.+.+ ..+|+|++++...+..+++.+.+.+. .++.+++.+..-
T Consensus 158 ~~-~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p~di~v~g~d~~~ 215 (266)
T cd06282 158 FN-TAALPSALLALLTAHPAPTAIFCSNDLLALAVIRALRRLGLRVPDDLSVVGFDGIA 215 (266)
T ss_pred Cc-HHHHHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeecchH
Confidence 11 110111112222 25799999998888888888877652 366788877543
No 66
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.74 E-value=0.58 Score=41.65 Aligned_cols=192 Identities=10% Similarity=0.029 Sum_probs=100.3
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccch
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
..+.+.++++|+.+.....- .+.+...+.+ .....|.||+.+.. ......+.+.+ .+++++.++...
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~-----~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~ 90 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGA-----LDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIA---RGIPVIDMGTLI 90 (272)
T ss_pred HHHHHHHHHcCCEEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHH---CCCcEEEeCCCC
Confidence 34556677889888765321 1222222222 24679999997542 22333333333 367899998753
Q ss_pred HHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCC-CeeEEEEe
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNT 208 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G-~~v~~~~v 208 (300)
... .. +....+.+..+ .+..+++.|.+.....++++++.|... ..-+.+.|+++| .++.. .
T Consensus 91 ~~~--~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~--~ 160 (272)
T cd06313 91 APL--QI------NVHSFLAPDNYFMGASVAQALCNAMGGKGKIAMLQGALGHTGAQGRAQGFNDVIKKYPDIEVVD--E 160 (272)
T ss_pred CCC--CC------ceEEEECCCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchhHHHHHHHHHHHhCCCCEEEe--c
Confidence 210 11 21111223332 244555555554323468999977532 344566777765 33322 2
Q ss_pred eeeeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHH-HHHHcCC
Q 022234 209 YTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTAS-AAKRLGL 272 (300)
Q Consensus 209 Y~~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~-~l~~~G~ 272 (300)
+..........+..+. + .++++|+.+|-..+...++.+.+.+..++.+++++..-.. .+-+.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~di~vvgfd~~~~~~~~~~~g~ 229 (272)
T cd06313 161 QPANWDVSKAARIWETWLTKYPQLDGAFCHNDSMALAAYQIMKAAGRTKIVIGGVDGDPPAIQAVSDGR 229 (272)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHcCCCceEEEeecCCHHHHHHHHcCc
Confidence 2111111111111222 2 3589999999888877777777655456788888755432 2334464
No 67
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.70 E-value=0.37 Score=42.42 Aligned_cols=199 Identities=8% Similarity=0.021 Sum_probs=104.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHH---HhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~---~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.+++.|+.++.+.. . .+.+... +.+....+|.||+++...-..... +.. .+.+++.+|....
T Consensus 19 ~~i~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~-~~~---~~iPvV~~~~~~~- 88 (263)
T cd06280 19 RAVEDAAYRAGLRVILCNT---D--EDPEKEAMYLELMEEERVTGVIFAPTRATLRRLA-ELR---LSFPVVLIDRAGP- 88 (263)
T ss_pred HHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCchHHH-HHh---cCCCEEEECCCCC-
Confidence 3455778888988864322 1 1222211 223346799999988653322222 222 3678999987642
Q ss_pred HHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 213 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~ 213 (300)
.. .+..........+..+++.|.+. ..+++.++.+... ..-+.+.++++|.......+ . .
T Consensus 89 ---~~------~~~~v~~d~~~~g~~a~~~L~~~--g~~~i~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~--~-~ 154 (263)
T cd06280 89 ---AG------RVDAVVLDNRAAARTLVEHLVAQ--GYRRIGGLFGNASTTGAERRAGYEDAMRRHGLAPDARFV--A-P 154 (263)
T ss_pred ---CC------CCCEEEECcHHHHHHHHHHHHHC--CCceEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCChhhc--c-c
Confidence 11 22221111122345555666554 2368888876532 23455667777765432111 0 1
Q ss_pred CCCCc-HHHHHHc---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHH
Q 022234 214 VHHVD-QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGW 286 (300)
Q Consensus 214 ~~~~~-~~~~~~l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l 286 (300)
..... +.+.+.+ ..+++|+.++...+..+++.+.+.+. .++.+++++...-.....-++.. + ..+.+.+
T Consensus 155 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~~~~~~~~p~lt~--i--~~~~~~~ 230 (263)
T cd06280 155 TAEAAEAALAAWLAAPERPEALVASNGLLLLGALRAVRAAGLRIPQDLALAGFDNDPWTELVGPGITV--I--EQPVEEI 230 (263)
T ss_pred CHHHHHHHHHHHhcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCcEEEEEeCChhHHHhcCCCceE--e--cCCHHHH
Confidence 11111 1122223 25789999999988888888777652 47788888775433332334432 2 2355555
Q ss_pred HHH
Q 022234 287 VDS 289 (300)
Q Consensus 287 ~~a 289 (300)
.+.
T Consensus 231 g~~ 233 (263)
T cd06280 231 GRA 233 (263)
T ss_pred HHH
Confidence 443
No 68
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.68 E-value=0.79 Score=40.34 Aligned_cols=179 Identities=10% Similarity=0.034 Sum_probs=95.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|+++...+.-. .. .....+...+....+|.||+.+...-.. ++.+.+ .+++++.++..- .
T Consensus 22 ~~i~~~~~~~g~~~~~~~~~~-~~-~~~~~~~~~l~~~~vdgiii~~~~~~~~-~~~l~~---~~ipvV~~~~~~----~ 91 (268)
T cd06277 22 RAIEEEAKKYGYNLILKFVSD-ED-EEEFELPSFLEDGKVDGIILLGGISTEY-IKEIKE---LGIPFVLVDHYI----P 91 (268)
T ss_pred HHHHHHHHHcCCEEEEEeCCC-Ch-HHHHHHHHHHHHCCCCEEEEeCCCChHH-HHHHhh---cCCCEEEEccCC----C
Confidence 345566777898877664311 00 0111122223346799999988654332 333433 367888887542 1
Q ss_pred HHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 143 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
.. ++.. +....+ .+...++.|.+. +.++++++.+... ..-+.+.+++.|..+....++...
T Consensus 92 ~~------~~~~-V~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~-- 160 (268)
T cd06277 92 NE------KADC-VLTDNYSGAYAATEYLIEK--GHRKIGFVGDPLYSPSFEERYEGYKKALLDHGIPFNEDYDITEK-- 160 (268)
T ss_pred CC------CCCE-EEecchHHHHHHHHHHHHC--CCCcEEEECCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEEcc--
Confidence 12 3322 122222 233344555443 3478999876653 123567777888765443332211
Q ss_pred CCCc---HHHHHHc-CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 215 HHVD---QTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 215 ~~~~---~~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
.... .++++.. ..+++|+..+...+..++..+.+.+. .++.+++++..
T Consensus 161 ~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~a~~~~g~~~p~di~vig~d~~ 215 (268)
T cd06277 161 EEDEEDIGKFIDELKPLPTAFFCSNDGVAFLLIKVLKEMGIRVPEDVSVIGFDDI 215 (268)
T ss_pred hhHHHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCcceEEeecCc
Confidence 1111 1222222 34889999988888777777766552 46778887754
No 69
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=94.56 E-value=1.9 Score=36.22 Aligned_cols=132 Identities=19% Similarity=0.198 Sum_probs=81.8
Q ss_pred CCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEE
Q 022234 126 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 205 (300)
Q Consensus 126 ~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~ 205 (300)
.+..++.-.-.|++.|++++ ++++..+ ..+..++++.|.+....++++.++.....-..+.
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-----~iPVV~I--~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~------------ 93 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-----SIPVVEI--PISGFDILRALAKAKKYGPKIAVVGYPNIIPGLE------------ 93 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC------SS-EEEE-----HHHHHHHHHHCCCCTSEEEEEEESS-SCCHH------------
T ss_pred cCCeEEEECCHHHHHHHHhC-----CCCEEEE--CCCHhHHHHHHHHHHhcCCcEEEEecccccHHHH------------
Confidence 35556665566999999995 7766544 4567788888876554556776665544322111
Q ss_pred EEeeeeeeCCCCcHHHHHHcC-CCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHH
Q 022234 206 LNTYTTEPVHHVDQTVLKQAL-SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLE 284 (300)
Q Consensus 206 ~~vY~~~~~~~~~~~~~~~l~-~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~ 284 (300)
.+.+.++ ++....|.|+..++..+..+... +..++.=|..+.+.++++|++.+.+ .++.+
T Consensus 94 --------------~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~---G~~viVGg~~~~~~A~~~gl~~v~i--~sg~e 154 (176)
T PF06506_consen 94 --------------SIEELLGVDIKIYPYDSEEEIEAAIKQAKAE---GVDVIVGGGVVCRLARKLGLPGVLI--ESGEE 154 (176)
T ss_dssp --------------HHHHHHT-EEEEEEESSHHHHHHHHHHHHHT---T--EEEESHHHHHHHHHTTSEEEES--S--HH
T ss_pred --------------HHHHHhCCceEEEEECCHHHHHHHHHHHHHc---CCcEEECCHHHHHHHHHcCCcEEEE--EecHH
Confidence 1111121 34456666777777777776653 5788888999999999999986543 55899
Q ss_pred HHHHHHHHHHH
Q 022234 285 GWVDSILEALR 295 (300)
Q Consensus 285 ~l~~ai~~~~~ 295 (300)
++-++|.+++.
T Consensus 155 si~~Al~eA~~ 165 (176)
T PF06506_consen 155 SIRRALEEALR 165 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987764
No 70
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.53 E-value=2.9 Score=38.14 Aligned_cols=210 Identities=16% Similarity=0.126 Sum_probs=116.6
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeee-CCC--chhHHHhhhcCCccEEEEeCh----HH----------
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ-GPD--TDRLSSVLNDTIFDWIIITSP----EA---------- 112 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~-~~~--~~~l~~~l~~~~~d~ivFTS~----~a---------- 112 (300)
|+++.|...+.+.-.+++.|.++|+.|..+=+=+... ... ...+.+. .....|+||+.=+ ++
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~p~~~~~~~~~i~~~~~~~~ 79 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLEL-DLTTLDVVILPVPGTSHDGKVATVFSNEK 79 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhh-hhccCCEEEECCccccCCceEecccccCC
Confidence 6889999998888999999999999976543211100 000 0011111 1356677765432 21
Q ss_pred --H-HHHHHHHHHcCCCCceEEEEccchHH---HHHHHhhccCCCcccc------ccC---CCCcHHHHHHhcccC---C
Q 022234 113 --G-SVFLEAWKEAGTPNVRIGVVGAGTAS---IFEEVIQSSKCSLDVA------FSP---SKATGKILASELPKN---G 174 (300)
Q Consensus 113 --v-~~~~~~l~~~~~~~~~i~aVG~~Ta~---~L~~~~~~~~~G~~~~------~~p---~~~~~e~L~~~L~~~---~ 174 (300)
+ +.+++.+. ...+++.|-.+.. ++++. |+.+. -++ ...++++-+..+.+. .
T Consensus 80 ~~l~~~~l~~~~-----~~~~~~~G~~~~~l~~~a~~~------gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~ 148 (287)
T TIGR02853 80 VVLTPELLESTK-----GHCTIYVGISNPYLEQLAADA------GVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFT 148 (287)
T ss_pred ccccHHHHHhcC-----CCCEEEEecCCHHHHHHHHHC------CCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCC
Confidence 1 12222222 2334555544432 66777 88876 222 234455444333222 2
Q ss_pred CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCC-----------CcHHHHHHcCCCCEEEEEChHHH--HH
Q 022234 175 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----------VDQTVLKQALSIPVVAVASPSAV--RS 241 (300)
Q Consensus 175 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~-----------~~~~~~~~l~~~d~IvftS~s~v--~~ 241 (300)
..++++++++.......+...|...|++| .+|.+.+... ...++.+.+.+.|+|+.+.|..+ +.
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V---~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~ 225 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGARV---FVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTAD 225 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCCEE---EEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHH
Confidence 36789999988777788999999999754 4555432110 01122233468899999998764 22
Q ss_pred HHHHhcccCCCCceEEEe----CHHHHHHHHHcCCCeEEec
Q 022234 242 WVNLISDTEQWSNSVACI----GETTASAAKRLGLKNVYYP 278 (300)
Q Consensus 242 ~~~~~~~~~~~~~~vv~I----G~~Ta~~l~~~G~~~~~v~ 278 (300)
.++.+++ +..++=+ |.+--+.+++.|.+....+
T Consensus 226 ~l~~~k~----~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 226 VLSKLPK----HAVIIDLASKPGGTDFEYAKKRGIKALLAP 262 (287)
T ss_pred HHhcCCC----CeEEEEeCcCCCCCCHHHHHHCCCEEEEeC
Confidence 2222221 2222212 4443489999999875444
No 71
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.42 E-value=1.2 Score=40.00 Aligned_cols=221 Identities=10% Similarity=-0.007 Sum_probs=105.6
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccchHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIF 141 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 141 (300)
.+.+.++++|++++.+..-.-.+....+.+... .....|.||+.+.. ......+.+.+ .+++++.++..... .
T Consensus 20 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~~~~dgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~~-~ 94 (294)
T cd06316 20 GAKDEFAKLGIEVVATTDAQFDPAKQVADIETT-ISQKPDIIISIPVDPVSTAAAYKKVAE---AGIKLVFMDNVPSG-L 94 (294)
T ss_pred HHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHH-HHhCCCEEEEcCCCchhhhHHHHHHHH---cCCcEEEecCCCcc-c
Confidence 345667888988874311110000000112222 24579999886533 23344444444 36788888864321 1
Q ss_pred HHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeee
Q 022234 142 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 213 (300)
Q Consensus 142 ~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 213 (300)
... .++......+.+ .+..+.+.|.+...+.+++.++.+.... .-+.+.|++++..+..+..... .
T Consensus 95 ~~~-----~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~-~ 168 (294)
T cd06316 95 EHG-----KDYAGIVTDDNYGNGQIAADALAKALPGKGKVGLIYHGADYFVTNQRDQGFKETIKKNYPDITIVAEKGI-D 168 (294)
T ss_pred ccC-----cceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCcccHHHHHHHHHHHHHHhCCCcEEEeecCC-c
Confidence 110 011111122222 2344455555443345799999775432 3345566655532222211110 1
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHH--HHHHHcCCCeEEecCCC--CHHH
Q 022234 214 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTA--SAAKRLGLKNVYYPTHP--GLEG 285 (300)
Q Consensus 214 ~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta--~~l~~~G~~~~~v~~~p--~~~~ 285 (300)
......+..+. + .++++|+.+|-..+...++.+.+.+..++.++++|..+. ..+.+.|.....+...+ --+.
T Consensus 169 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~di~vvg~d~~~~~~~~~~~~~~~~~tv~~~~~~~g~~ 248 (294)
T cd06316 169 GPSKAEDIANAMLTQNPDLKGIYAVWDVPAEGVIAALRAAGRDDIKVTTVDLGLNVALDMAKGGNVAGIGAQRPYDQGVA 248 (294)
T ss_pred chhHHHHHHHHHHHhCCCeeEEEeCCCchhHHHHHHHHHcCCCCceEEEeCCCcHHHHHHHHcCCccEEEecCHHHHHHH
Confidence 01111112222 2 357889998888888888888876645788999875332 23333565433333222 1123
Q ss_pred HHHHHHHHHH
Q 022234 286 WVDSILEALR 295 (300)
Q Consensus 286 l~~ai~~~~~ 295 (300)
.++.+.+.+.
T Consensus 249 a~~~l~~~l~ 258 (294)
T cd06316 249 EARLAALALI 258 (294)
T ss_pred HHHHHHHHHh
Confidence 4445555444
No 72
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.30 E-value=1.7 Score=38.22 Aligned_cols=178 Identities=8% Similarity=0.057 Sum_probs=97.2
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCch---hHHHhhhcCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNDTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~---~l~~~l~~~~~d~ivFTS~~-av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
.+.+.++++|+++...... .+.+ ...+.+....+|+||+++.. .-..+.+ +.. .+.+++++|....
T Consensus 20 gi~~~~~~~gy~v~~~~~~-----~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~-~~~---~~~pvV~i~~~~~- 89 (269)
T cd06293 20 AVEEEADARGLSLVLCATR-----NRPERELTYLRWLDTNHVDGLIFVTNRPDDGALAK-LIN---SYGNIVLVDEDVP- 89 (269)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHH-HHh---cCCCEEEECCCCC-
Confidence 4557778889888655332 1222 11122235679999998531 1122222 222 3678999996531
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. .+. .+.++.+ .+...++.|.+. +.++++++.+... ..-+.+.|++.|..+....++..
T Consensus 90 ---~~------~~~-~V~~d~~~~~~~~~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~ 157 (269)
T cd06293 90 ---GA------KVP-KVFCDNEQGGRLATRHLARA--GHRRIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCFG 157 (269)
T ss_pred ---CC------CCC-EEEECCHHHHHHHHHHHHHC--CCceEEEEecCcccccHHHHHHHHHHHHHHcCCCCChheEEec
Confidence 11 211 1223332 244555666554 3478999976533 23466777888866543333322
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 212 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
........+.... + ..+++|+..+-..+...++.+.+.+. .++.+++++...
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~di~i~g~d~~~ 216 (269)
T cd06293 158 DYTREFGRAAAAQLLARGDPPTAIFAASDEIAIGLLEVLRERGLSIPGDMSLVGFDDVG 216 (269)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEeecCch
Confidence 1111111112222 2 24799999998888777777776552 478899998653
No 73
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=94.13 E-value=0.97 Score=39.88 Aligned_cols=177 Identities=11% Similarity=0.043 Sum_probs=96.2
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCch----hHHHhhhcCCccEEEEeChHH-----HHHHHHHHHHcCCCCceEEEEc
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNDTIFDWIIITSPEA-----GSVFLEAWKEAGTPNVRIGVVG 134 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~----~l~~~l~~~~~d~ivFTS~~a-----v~~~~~~l~~~~~~~~~i~aVG 134 (300)
.+.+.++++|+.++.... . .+.+ .++. +....+|++|+++... ...+.+.+.+ .+++++.+|
T Consensus 20 gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~-l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~---~~ipvV~~~ 90 (273)
T cd01541 20 GIESVLSEKGYSLLLAST---N--NDPERERKCLEN-MLSQGIDGLIIEPTKSALPNPNIDLYLKLEK---LGIPYVFIN 90 (273)
T ss_pred HHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHH-HHHcCCCEEEEeccccccccccHHHHHHHHH---CCCCEEEEe
Confidence 456778888988876432 1 1221 2222 2346799999976432 2233333433 367899998
Q ss_pred cchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEE
Q 022234 135 AGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 135 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~ 207 (300)
.... .. ++.. +..+.+ .+..+++.|.+. +.++++++.+... ..-+.+.|++.|..+....
T Consensus 91 ~~~~----~~------~~~~-V~~D~~~~g~~~~~~l~~~--G~~~i~~l~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~ 157 (273)
T cd01541 91 ASYE----EL------NFPS-LVLDDEKGGYKATEYLIEL--GHRKIAGIFKADDLQGVKRMKGFIKAYREHGIPFNPSN 157 (273)
T ss_pred cCCC----CC------CCCE-EEECcHHHHHHHHHHHHHc--CCcCEEEecCCCcccHHHHHHHHHHHHHHcCCCCChHH
Confidence 6531 11 2211 222232 234555666554 3467877755332 1235677888886543332
Q ss_pred eeeeeeCC--CCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 208 TYTTEPVH--HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 208 vY~~~~~~--~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
++...... ....+..+. + ..+|+|+++|-..+..++..+.+.+. .++.+++++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~av~~~~d~~a~g~~~al~~~g~~~p~dv~vvg~d~~ 221 (273)
T cd01541 158 VITYTTEEKEEKLFEKIKEILKRPERPTAIVCYNDEIALRVIDLLKELGLKIPEDISVVGFDDS 221 (273)
T ss_pred EEeccccchhhHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCcEEEEEcCCc
Confidence 32211111 111122222 2 35899999999988888888876653 36788888653
No 74
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.11 E-value=1 Score=39.80 Aligned_cols=215 Identities=13% Similarity=0.041 Sum_probs=106.0
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccch
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
..+.+.++++|+++.....-. .+.+...+. +.....|+||+++... +....+.+.+ .++++++++...
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 92 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPET----FDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVA---AGIPVISFNAGD 92 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCC----CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHH---CCCeEEEeCCCC
Confidence 345566777888887654321 022211112 2235799999987542 3333444443 367899998542
Q ss_pred HHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEee
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY 209 (300)
.. .... ..+.. +.... ..+..+++.|.+. .+.++++++.|... ..-+.+.++++|..+. .+
T Consensus 93 ~~-~~~~-----~~~~~-V~~d~~~~g~~~~~~l~~~-~g~~~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~~---~~ 161 (271)
T cd06312 93 PK-YKEL-----GALAY-VGQDEYAAGEAAGERLAEL-KGGKNVLCVIHEPGNVTLEDRCAGFADGLGGAGITEE---VI 161 (271)
T ss_pred Cc-cccc-----cceEE-eccChHHHHHHHHHHHHHh-cCCCeEEEEecCCCCccHHHHHHHHHHHHHhcCceee---Ee
Confidence 11 0001 01111 11222 2344555566552 23468888876432 2344556666665432 12
Q ss_pred eeeeCCCCcHHHHH----HcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHH--HHHHHHcCCCeEEecC--C
Q 022234 210 TTEPVHHVDQTVLK----QALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT--ASAAKRLGLKNVYYPT--H 280 (300)
Q Consensus 210 ~~~~~~~~~~~~~~----~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~T--a~~l~~~G~~~~~v~~--~ 280 (300)
..........+..+ ...++|+|+.++...+...+..+.+.+. .++.+++++..- .+++. .|.....+.. .
T Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~~di~vvg~d~~~~~~~~l~-~g~~~~tv~~~~~ 240 (271)
T cd06312 162 ETGADPTEVASRIAAYLRANPDVDAVLTLGAPSAAPAAKALKQAGLKGKVKLGGFDLSPATLQAIK-AGYIQFAIDQQPY 240 (271)
T ss_pred ecCCCHHHHHHHHHHHHHhCCCccEEEEeCCccchHHHHHHHhcCCCCCeEEEEecCCHHHHHHHh-cCceEEEEecCch
Confidence 11111111111122 1235899999998888777777766553 367888886443 22243 3432222222 2
Q ss_pred CCHHHHHHHHHHHHHc
Q 022234 281 PGLEGWVDSILEALRE 296 (300)
Q Consensus 281 p~~~~l~~ai~~~~~~ 296 (300)
---...++.+.+.+..
T Consensus 241 ~~g~~a~~~l~~~~~~ 256 (271)
T cd06312 241 LQGYLPVSLLWLYKRY 256 (271)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 2223455555555554
No 75
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=93.81 E-value=3.7 Score=35.76 Aligned_cols=180 Identities=13% Similarity=0.046 Sum_probs=93.5
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.+.+.++++|+.+..++. . .+.+...+.+ ....+|+||+.+... +....+.+.+ .+++++.++..-.
T Consensus 20 ~i~~~~~~~g~~v~~~~~---~--~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~---~~ipvv~~~~~~~ 91 (268)
T cd06323 20 GAQKEAKELGYELTVLDA---Q--NDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANE---AGIPVFTIDREAN 91 (268)
T ss_pred HHHHHHHHcCceEEecCC---C--CCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH---CCCcEEEEccCCC
Confidence 455777888988865443 1 1222212222 235799999976432 2334444433 3678988876421
Q ss_pred HHHHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhC-CCeeEEEEee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRLNTY 209 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~-G~~v~~~~vY 209 (300)
. .. .+. .+....+. +..+++.|.+.....++++++.+... ..-+.+.|+++ |..+.....+
T Consensus 92 ~---~~------~~~-~v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~ 161 (268)
T cd06323 92 G---GE------VVS-QIASDNVAGGKMAAEYLVKLLGGKGKVVELQGIPGASAARERGKGFHEVVDKYPGLKVVASQPA 161 (268)
T ss_pred C---Cc------eEE-EEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEecccC
Confidence 0 00 111 12223332 34556666654223468888866432 23455667763 6554321111
Q ss_pred eeeeCCCCc-HHHHHHc---CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHH
Q 022234 210 TTEPVHHVD-QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETT 263 (300)
Q Consensus 210 ~~~~~~~~~-~~~~~~l---~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~T 263 (300)
. ...... ..+.+.+ .++++|+.++...+...+..+.+.+..++.+++++...
T Consensus 162 ~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~di~iig~d~~~ 217 (268)
T cd06323 162 D--FDRAKGLNVMENILQAHPDIKGVFAQNDEMALGAIEALKAAGKDDVKVVGFDGTP 217 (268)
T ss_pred C--CCHHHHHHHHHHHHHHCCCcCEEEEcCCchHHHHHHHHHHcCCCCcEEEEeCCCH
Confidence 1 111111 1111212 35789999998888777777766544467888876654
No 76
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.80 E-value=1.2 Score=33.60 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=57.8
Q ss_pred EEEEEcC-CCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEE
Q 022234 179 TVLYPAS-AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVA 257 (300)
Q Consensus 179 ~vL~~rg-~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv 257 (300)
+||+++| +.....+.+.+++.|+..... .+..........+...+.+.|.|++.....-.....
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~------------- 65 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH--GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMW------------- 65 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE--ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHH-------------
Confidence 4789999 445678899999999876555 222222222112444467889877664333332222
Q ss_pred EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHH
Q 022234 258 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 293 (300)
Q Consensus 258 ~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~ 293 (300)
...+.+++.|... +.+...+..+|.++|.+.
T Consensus 66 ----~vk~~akk~~ip~-~~~~~~~~~~l~~~l~~~ 96 (97)
T PF10087_consen 66 ----KVKKAAKKYGIPI-IYSRSRGVSSLERALERL 96 (97)
T ss_pred ----HHHHHHHHcCCcE-EEECCCCHHHHHHHHHhh
Confidence 2335667778765 456667888888887653
No 77
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=93.72 E-value=0.79 Score=40.55 Aligned_cols=182 Identities=9% Similarity=0.002 Sum_probs=91.7
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccch
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
..+.+.++++|+.+..+.. . ..+.+...+. +.....|.+|+.+.. +.......+ .. +++++.+|...
T Consensus 18 ~gi~~~~~~~g~~~~~~~~---~-~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~---~~-~ipvV~~~~~~ 89 (271)
T cd06314 18 AGVKAAGKELGVDVEFVVP---Q-QGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKA---AA-GIKLITTDSDA 89 (271)
T ss_pred HHHHHHHHHcCCeEEEeCC---C-CCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHH---hc-CCCEEEecCCC
Confidence 3455677888988776521 1 1121211122 235689999998643 222233323 23 67899998643
Q ss_pred HHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEee
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY 209 (300)
... . .+. .+....+ .+...++.|.+...++.+++++.|... ..-+.+.+++.|..+... +
T Consensus 90 ~~~---~------~~~-~V~~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~--~ 157 (271)
T cd06314 90 PDS---G------RYV-YIGTDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKDAIKDSKIEIVDT--R 157 (271)
T ss_pred Ccc---c------eeE-EEccChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHHHHhcCCcEEEEE--e
Confidence 110 0 111 1122222 234455555443223456666666532 234677788888665431 1
Q ss_pred eeeeCCCCcHH----HHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHHH
Q 022234 210 TTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETTA 264 (300)
Q Consensus 210 ~~~~~~~~~~~----~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~Ta 264 (300)
..........+ +++.-.++++|+..+...+..+++.+.+.+. .++.+++++....
T Consensus 158 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~al~~~g~~~di~vig~d~~~~ 217 (271)
T cd06314 158 GDEEDFAKAKSNAEDALNAHPDLKCMFGLYAYNGPAIAEAVKAAGKLGKVKIVGFDEDPD 217 (271)
T ss_pred cCccCHHHHHHHHHHHHHhCCCccEEEecCCccHHHHHHHHHHcCCCCceEEEEeCCCHH
Confidence 11111011111 2221135788887776666666666666543 3678888877643
No 78
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.71 E-value=0.87 Score=36.60 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=66.4
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-----HHHHHHHHhcccCCCCceEEEe-
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACI- 259 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s-----~v~~~~~~~~~~~~~~~~vv~I- 259 (300)
+.+.+...|+..|++|...-.+.+ +++..+.. .+.|+|.+.|-. .++.+.+.+++.+..+.++++=
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~~s------~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLFQT------PEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCC------HHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 466777899999999877766632 22233322 488999888755 3444455555443335555553
Q ss_pred --CHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 260 --GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 260 --G~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
.+.-.+.++++|+...+ ....+...+++.+.+.+.
T Consensus 92 ~~~~~~~~~l~~~Gvd~~~-~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 92 VIPPQDFDELKEMGVAEIF-GPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCChHhHHHHHHCCCCEEE-CCCCCHHHHHHHHHHHHH
Confidence 34457788999998754 555699999999888664
No 79
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=93.70 E-value=2.3 Score=34.33 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=64.6
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-----HHHHHHHHhcccCCCCceEEEeC
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACIG 260 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s-----~v~~~~~~~~~~~~~~~~vv~IG 260 (300)
+.+.+...|+.+|++|..+-+.. +++++.+.. .+.|+|..+|-. ..+.+.+.+++.++.+.++++=|
T Consensus 17 Gk~iv~~~l~~~GfeVi~LG~~v------~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG 90 (134)
T TIGR01501 17 GNKILDHAFTNAGFNVVNLGVLS------PQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGG 90 (134)
T ss_pred hHHHHHHHHHHCCCEEEECCCCC------CHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecC
Confidence 45667778999998885554432 333444433 478888776633 34455556666555566655545
Q ss_pred H------H---HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 261 E------T---TASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 261 ~------~---Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
. . ..+.++++|+..++-|. ...+.+++.|.+.++
T Consensus 91 ~~vi~~~d~~~~~~~l~~~Gv~~vF~pg-t~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 91 NLVVGKQDFPDVEKRFKEMGFDRVFAPG-TPPEVVIADLKKDLN 133 (134)
T ss_pred CcCcChhhhHHHHHHHHHcCCCEEECcC-CCHHHHHHHHHHHhc
Confidence 1 1 13469999999866555 488999999988764
No 80
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=93.52 E-value=2.1 Score=37.52 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=93.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCc-hhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 141 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~-~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 141 (300)
..+.+.++++|++++..+.- ..++. .+..+.+.....|+||+++...- ...+.+ .+.++++++....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~~~~dgiii~~~~~~---~~~~~~---~gipvv~~~~~~~--- 86 (265)
T cd06291 19 RAVEKELYKKGYKLILCNSD---NDPEKEREYLEMLRQNQVDGIIAGTHNLG---IEEYEN---IDLPIVSFDRYLS--- 86 (265)
T ss_pred HHHHHHHHHCCCeEEEecCC---ccHHHHHHHHHHHHHcCCCEEEEecCCcC---HHHHhc---CCCCEEEEeCCCC---
Confidence 34556778889887754331 11111 11112223467999999876422 122222 3678999987532
Q ss_pred HHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-h-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 142 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-S-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 142 ~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
. ++.. +..+.+ .+..+++.|.+. +.++++++.+... . .-+.+.|+++|..+..+.+ ..
T Consensus 87 --~------~~~~-V~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~-~~- 153 (265)
T cd06291 87 --E------NIPI-VSSDNYEGGRLAAEELIER--GCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIEI-QE- 153 (265)
T ss_pred --C------CCCe-EeechHHHHHHHHHHHHHc--CCcEEEEEccCcccccchHHHHHHHHHHHHHcCCCCChhee-ec-
Confidence 2 3221 122222 245556666654 3468998876554 1 3466778888876543221 11
Q ss_pred eCCCC-cHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 213 PVHHV-DQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 213 ~~~~~-~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
..... ..+.... + .++++|+..+-..+..+++.+.+.+. .++.+++++..
T Consensus 154 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~vp~di~v~g~d~~ 211 (265)
T cd06291 154 NFDDAEKKEEIKELLEEYPDIDGIFASNDLTAILVLKEAQQRGIRVPEDLQIIGYDGT 211 (265)
T ss_pred cccchHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEeccCCh
Confidence 11111 1112222 2 34688888777777777777776552 35777777654
No 81
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=93.37 E-value=0.49 Score=42.80 Aligned_cols=170 Identities=10% Similarity=0.092 Sum_probs=98.2
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHHcCCCCceEEEEccchHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTASIF 141 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 141 (300)
..+.+.++++|+.++.+..-. .++.++..+.+.....|++|++|...= ..+.. +.+ .+.+++.+|......
T Consensus 21 ~gIe~~a~~~Gy~l~l~~t~~---~~~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~-~~~---~~iPvV~~~~~~~~~- 92 (279)
T PF00532_consen 21 RGIEQEAREHGYQLLLCNTGD---DEEKEEYIELLLQRRVDGIILASSENDDEELRR-LIK---SGIPVVLIDRYIDNP- 92 (279)
T ss_dssp HHHHHHHHHTTCEEEEEEETT---THHHHHHHHHHHHTTSSEEEEESSSCTCHHHHH-HHH---TTSEEEEESS-SCTT-
T ss_pred HHHHHHHHHcCCEEEEecCCC---chHHHHHHHHHHhcCCCEEEEecccCChHHHHH-HHH---cCCCEEEEEeccCCc-
Confidence 345667788999887755421 111111112223578999999987655 33333 322 268999999864222
Q ss_pred HHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCE-EEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeee
Q 022234 142 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT-VLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 213 (300)
Q Consensus 142 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~-vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 213 (300)
. ++..+..-....+....+.|.+.. -++ |+++.+.... .-+.+.|+++|..+....++....
T Consensus 93 --~------~~~~V~~D~~~a~~~a~~~Li~~G--h~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~ 162 (279)
T PF00532_consen 93 --E------GVPSVYIDNYEAGYEATEYLIKKG--HRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDF 162 (279)
T ss_dssp --C------TSCEEEEEHHHHHHHHHHHHHHTT--CCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSS
T ss_pred --c------cCCEEEEcchHHHHHHHHHHHhcc--cCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccCC
Confidence 2 444332211122345566666653 367 8999887642 246788899999777777765422
Q ss_pred CCCCcHHHHHHc----CCCCEEEEEChHHHHHHHHHhcccC
Q 022234 214 VHHVDQTVLKQA----LSIPVVAVASPSAVRSWVNLISDTE 250 (300)
Q Consensus 214 ~~~~~~~~~~~l----~~~d~IvftS~s~v~~~~~~~~~~~ 250 (300)
......+..+.+ ..+|+|+.++-..+...+..+.+.+
T Consensus 163 ~~~~g~~~~~~ll~~~p~idai~~~nd~~A~ga~~~l~~~g 203 (279)
T PF00532_consen 163 DYESGYEAARELLESHPDIDAIFCANDMMAIGAIRALRERG 203 (279)
T ss_dssp SHHHHHHHHHHHHHTSTT-SEEEESSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhCCCCEEEEEeCHHHHHHHHHHHHHcC
Confidence 111111222222 2466999999888888777776654
No 82
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.35 E-value=2.1 Score=34.37 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=71.5
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-----HHHHHHHH
Q 022234 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-----AGSVFLEA 119 (300)
Q Consensus 50 g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-----av~~~~~~ 119 (300)
+.||++.-... +..-.+..|+..|++|+........ +++-+.....+.|.|+.+|-. .+..+.+.
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~-----e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~ 76 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTP-----EEIARQAVEADVHVVGVSSLAGGHLTLVPALRKE 76 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCH-----HHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHH
Confidence 35666664443 3556778899999999999886322 223222335689999998866 35666666
Q ss_pred HHHcCCCCceEEEEccc---hHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 120 WKEAGTPNVRIGVVGAG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 120 l~~~~~~~~~i~aVG~~---Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
+++.+.++.++++=|.. -.+.+++. |+.-.+.|.. +.++.++.+.+
T Consensus 77 L~~~g~~~i~vivGG~~~~~~~~~l~~~------Gvd~~~~~gt-~~~~i~~~l~~ 125 (132)
T TIGR00640 77 LDKLGRPDILVVVGGVIPPQDFDELKEM------GVAEIFGPGT-PIPESAIFLLK 125 (132)
T ss_pred HHhcCCCCCEEEEeCCCChHhHHHHHHC------CCCEEECCCC-CHHHHHHHHHH
Confidence 77766666777665422 35567777 9987666554 55666655543
No 83
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.32 E-value=1.6 Score=38.80 Aligned_cols=171 Identities=12% Similarity=0.078 Sum_probs=95.0
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|+.++.++... +.+ .+.....|.+|+.+...-....+.+.+ .+.+++.+|.....
T Consensus 27 ~~i~~~~~~~gy~~~~~~~~~-----~~~----~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~--- 91 (269)
T cd06287 27 AAAAESALERGLALCLVPPHE-----ADS----PLDALDIDGAILVEPMADDPQVARLRQ---RGIPVVSIGRPPGD--- 91 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-----chh----hhhccCcCeEEEecCCCCCHHHHHHHH---cCCCEEEeCCCCCC---
Confidence 456678889999988876541 111 233568999999875432222333333 36789999875310
Q ss_pred HHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeCC
Q 022234 143 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 215 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~ 215 (300)
.. ++.....-....+..+++.|.+. +-++++|+.+... ..-+.+.++++|..+..+.+ . ....
T Consensus 92 ~~------~~~~V~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~-~-~~~~ 161 (269)
T cd06287 92 RT------DVPYVDLQSAATARMLLEHLRAQ--GARQIALIVGSARRNSYLEAEAAYRAFAAEHGMPPVVLRV-D-EAGG 161 (269)
T ss_pred CC------CCCeEeeCcHHHHHHHHHHHHHc--CCCcEEEEeCCcccccHHHHHHHHHHHHHHcCCCcceeEe-c-CCCC
Confidence 12 33322222222345555666554 2368999976432 22356677888876542111 1 1111
Q ss_pred CCc-HHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEE
Q 022234 216 HVD-QTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVAC 258 (300)
Q Consensus 216 ~~~-~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~ 258 (300)
... .+..+. + .++++|+.+|-..+...+..+.+.++ .++.+++
T Consensus 162 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~gvl~al~~~gl~vP~dvsvig 212 (269)
T cd06287 162 EEAGYAACAQLLAQHPDLDALCVPVDAFAVGAVRAATELGRAVPDQLRVVT 212 (269)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 111 112222 2 25799999999888888887776653 3667776
No 84
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=93.25 E-value=1.5 Score=39.65 Aligned_cols=190 Identities=9% Similarity=0.079 Sum_probs=98.3
Q ss_pred HHHHHHHHhCCCCEEEe-eeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccc
Q 022234 63 GKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~-P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
..+.+.++++|+++..+ +.- .+.+...+.+ ....+|.||+++.. ++...++.+.+ .+++++.++..
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~-----~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~---~~iPvV~v~~~ 90 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTT-----ADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKARE---AGIKVVTHDSD 90 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCC-----CCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHH---CCCeEEEEcCC
Confidence 34556677889887753 332 1222122222 23579999998653 23444444443 36788888854
Q ss_pred hHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCe-eEEEE
Q 022234 137 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFE-VVRLN 207 (300)
Q Consensus 137 Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~-v~~~~ 207 (300)
... ... ++.+ ...+.+ .+..+++.|.+.....++++++.+... ..-+.+.|+++|.. +..+.
T Consensus 91 ~~~--~~~------~~~~-v~~D~~~~g~~a~~~l~~~~~~~~~I~~l~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~ 161 (298)
T cd06302 91 VQP--DNR------DYDI-EQADNKAIGETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWIDAAKAYQKEKYYPMLELVD 161 (298)
T ss_pred CCC--Ccc------eeEE-eccCHHHHHHHHHHHHHHHcCCCCEEEEEeCCCCCcchHHHHHHHHHHHhhcCCCCeEEeC
Confidence 211 011 1211 122222 234455556554222258998876443 24556778888732 22222
Q ss_pred eeeeeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHH--HHHHHHH
Q 022234 208 TYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET--TASAAKR 269 (300)
Q Consensus 208 vY~~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~--Ta~~l~~ 269 (300)
++..........+..+. + .++++|+.++-..+...++.+.+.+. .++.++.++.. +++.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~D~~A~g~~~al~~~g~~~dv~vvG~D~~~~~~~~~~~ 230 (298)
T cd06302 162 RQYGDDDADKSYQTAQELLKAYPDLKGIIGPTSVGIPGAARAVEEAGLKGKVAVTGLGLPNQMAPYVKS 230 (298)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhHHHHHHHhcCCCCCEEEEEeCCCHHHHHHHhC
Confidence 22211111111111211 2 35789988888777777777776554 36788888664 3455554
No 85
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=93.23 E-value=3.1 Score=37.42 Aligned_cols=191 Identities=9% Similarity=0.087 Sum_probs=102.3
Q ss_pred CCCeEEEeCCCCc-------hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHH--HHHH
Q 022234 49 SNPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEA--GSVF 116 (300)
Q Consensus 49 ~g~~VlitR~~~~-------~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~a--v~~~ 116 (300)
..++|.+.-+.-. ...+.+.++++|++++.+... .+.+...+. +....+|.+|+++... ....
T Consensus 25 ~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~-----~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~ 99 (295)
T PRK10653 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ-----NNPAKELANVQDLTVRGTKILLINPTDSDAVGNA 99 (295)
T ss_pred cCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHH
Confidence 3455655444322 345566778899888765321 122211122 2245789999876432 1223
Q ss_pred HHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC-------
Q 022234 117 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA------- 188 (300)
Q Consensus 117 ~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~------- 188 (300)
...+.+ .+++++.++..... .. .+. .+.++.+. +..+++.|.+....+.+++++.+...
T Consensus 100 l~~~~~---~~ipvV~~~~~~~~---~~------~~~-~V~~D~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~R 166 (295)
T PRK10653 100 VKMANQ---ANIPVITLDRGATK---GE------VVS-HIASDNVAGGKMAGDFIAKKLGEGAKVIQLEGIAGTSAARER 166 (295)
T ss_pred HHHHHH---CCCCEEEEccCCCC---Cc------eee-EEccChHHHHHHHHHHHHHHhCCCceEEEEEccCCCccHHHH
Confidence 333333 36788988854210 01 121 12333333 35566666654322246776655422
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCH
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 261 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~----~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~ 261 (300)
..-+.+.+++.|.++. ..+. ...... + +++...++++|+.++-..+...+..+.+.+..++.+++++.
T Consensus 167 ~~gf~~al~~~g~~~~--~~~~---~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~l~al~~~G~~dv~vig~d~ 241 (295)
T PRK10653 167 GEGFKQAVAAHKFNVL--ASQP---ADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDG 241 (295)
T ss_pred HHHHHHHHhhCCCEEE--EecC---CCCCHHHHHHHHHHHHHhCCCcCEEEECCChhHHHHHHHHHHcCCCceEEEEeCC
Confidence 3457788888886542 1221 111111 1 11111357899999988888888877776555788888875
Q ss_pred H
Q 022234 262 T 262 (300)
Q Consensus 262 ~ 262 (300)
.
T Consensus 242 ~ 242 (295)
T PRK10653 242 T 242 (295)
T ss_pred C
Confidence 4
No 86
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=93.20 E-value=3.4 Score=36.42 Aligned_cols=198 Identities=14% Similarity=0.023 Sum_probs=106.0
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|+.+...+. .. ... .....+|.+|+.+...- .....+.+ .+.+++.+|....
T Consensus 24 ~gi~~~~~~~g~~~~~~~~------~~-~~~---~~~~~vdgii~~~~~~~-~~~~~~~~---~~~pvV~~~~~~~---- 85 (270)
T cd01544 24 LGIEKRAQELGIELTKFFR------DD-DLL---EILEDVDGIIAIGKFSQ-EQLAKLAK---LNPNLVFVDSNPA---- 85 (270)
T ss_pred HHHHHHHHHcCCEEEEEec------cc-hhH---HhccCcCEEEEecCCCH-HHHHHHHh---hCCCEEEECCCCC----
Confidence 3556778889999887654 11 111 12467899998764322 22233333 3578999986532
Q ss_pred HHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC------------hhHHHHHHHhCCCeeEEEEee
Q 022234 143 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~------------~~~L~~~L~~~G~~v~~~~vY 209 (300)
+. .+.. +..+.+ .+..+++.|.+. +.++++++.+... ..-+.+.|.++|. .....++
T Consensus 86 ~~------~~~~-v~~D~~~a~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~-~~~~~~~ 155 (270)
T cd01544 86 PD------GFDS-VVPDFEQAVEKALDYLLEL--GHTRIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGL-YDPELIY 155 (270)
T ss_pred CC------CCCE-EEECHHHHHHHHHHHHHHc--CCCcEEEECCCcccccccchhhhHHHHHHHHHHHHcCC-CChheEe
Confidence 12 2322 222222 244556666553 3468999987542 2335567777773 2222233
Q ss_pred eeeeCCCCcHH----HHHHc--CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHHHHHHHcCCCeEEecCC
Q 022234 210 TTEPVHHVDQT----VLKQA--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTH 280 (300)
Q Consensus 210 ~~~~~~~~~~~----~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~ 280 (300)
..........+ +++.. ..+|+|+..+...+..+++.+.+.+. .++.+++.+..- .+.-.+.....+ .
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~~~--~~~~~~p~lttv--~ 231 (270)
T cd01544 156 IGDFTVESGYQLMKEALKSLGDNLPTAFFIASDPMAIGALRALQEAGIKVPEDVSVISFNDIE--VAKYVSPPLSTV--K 231 (270)
T ss_pred eCCCCHHHHHHHHHHHHhccCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECChh--HHhhcCCCCcee--c
Confidence 32111111111 22222 24789999999989888888877653 378888887643 233222222222 3
Q ss_pred CCHHHHHHHHHH
Q 022234 281 PGLEGWVDSILE 292 (300)
Q Consensus 281 p~~~~l~~ai~~ 292 (300)
.+...+.+...+
T Consensus 232 ~~~~~~g~~a~~ 243 (270)
T cd01544 232 IDTEEMGETAVD 243 (270)
T ss_pred CCHHHHHHHHHH
Confidence 456666554443
No 87
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.19 E-value=4 Score=36.06 Aligned_cols=194 Identities=12% Similarity=0.056 Sum_probs=97.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccch
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
..+.+.++++|+++..... ..+.+...+.+ .....|+||+++.. ++....+.+.+ .+++++++|...
T Consensus 19 ~~i~~~~~~~g~~v~~~~~-----~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~ 90 (282)
T cd06318 19 EAAKAHAKALGYELISTDA-----QGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKA---AGVPVVVVDSSI 90 (282)
T ss_pred HHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHH---CCCCEEEecCCC
Confidence 3455677889998764322 11222111222 34679999997643 22333344433 367899998642
Q ss_pred HHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccC-CCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeE---E
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN-GKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVV---R 205 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~-~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~---~ 205 (300)
.... . .+. .+....+ .+..+++.|.+. ..++++++++.+... ..-+.+.|+++|.... .
T Consensus 91 ~~~~--~------~~~-~v~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~ 161 (282)
T cd06318 91 NLEA--G------VVT-QVQSSNAKNGNLVGEWVVGELGDKPMKIILLSGDAGNLVGQARRDGFLLGVSEAQLRKYGKTN 161 (282)
T ss_pred CCCc--C------eEE-EEecCcHHHHHHHHHHHHHHhCCCCceEEEEECCCCCchHhHHHHhHHHHHhhCcccccccCC
Confidence 1000 1 111 1222222 245556666552 223458998876432 2345667777764211 1
Q ss_pred EEeeeeeeCCCCcHH-------HHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHH-HHHHHHHcCCC
Q 022234 206 LNTYTTEPVHHVDQT-------VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET-TASAAKRLGLK 273 (300)
Q Consensus 206 ~~vY~~~~~~~~~~~-------~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~-Ta~~l~~~G~~ 273 (300)
+.++........... ++....++|+|+..+-..+..++..+.+.+. .++.+++++.. .+..+-+.|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~~~~~~~~~~~~~~ 238 (282)
T cd06318 162 FTIVAQGYGDWTREGGLKAMEDLLVAHPDINVVYSENDDMALGAMRVLAEAGKTDDVKVAAADGQKEALALIKGGKY 238 (282)
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHhCCCcCEEEECCcchHHHHHHHHHHcCCCCCeEEEecCCCHHHHHHHHcCCc
Confidence 112111111111111 1211135789999988777777777776553 46788887554 33334334543
No 88
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=93.17 E-value=4.6 Score=35.57 Aligned_cols=183 Identities=11% Similarity=0.006 Sum_probs=92.9
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.+.+.++++|...+.+........ +.+...+.+ .. ..|.||+.+.+. ...+.+.+.+ .+++++.++....
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-~vdgiii~~~~~~~~~~~i~~~~~---~~ipvV~~~~~~~ 94 (275)
T cd06307 20 ALEAAAAAFPDARIRVRIHFVESF-DPAALAAALLRLGA-RSDGVALVAPDHPQVRAAVARLAA---AGVPVVTLVSDLP 94 (275)
T ss_pred HHHHHHhhhhccCceEEEEEccCC-CHHHHHHHHHHHHh-cCCEEEEeCCCcHHHHHHHHHHHH---CCCcEEEEeCCCC
Confidence 444566777777666554433221 222222222 24 899999988653 2334454544 3678888875431
Q ss_pred HHHHHHhhccCCCccccccCCCCc-HHHHHHhcccC-CCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKN-GKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~-~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY 209 (300)
.. . .+. .+....+. +...++.|.+. ..++++++++.|... ..-+.+.|+++|..+.....+
T Consensus 95 ~~---~------~~~-~V~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~ 164 (275)
T cd06307 95 GS---P------RAG-YVGIDNRAAGRTAAWLIGRFLGRRPGKVAVLAGSHRFRGHEEREMGFRSVLREEFPGLRVLETL 164 (275)
T ss_pred CC---c------eee-EEccChHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcchHHHHHHHHHHHHhhCCCcEEEeec
Confidence 10 1 111 11222222 33334445543 223468999877542 124556677776555433332
Q ss_pred eeeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCCC-CceEEEeCHH
Q 022234 210 TTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQW-SNSVACIGET 262 (300)
Q Consensus 210 ~~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~~-~~~vv~IG~~ 262 (300)
..........+..++ + .++++|+.++... ..+++.+.+.+.. ++.+++.+..
T Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~-~g~~~al~~~g~~~di~Ivg~d~~ 221 (275)
T cd06307 165 EGLDDPARAYEATRKLLARHPDLVGIYNAGGGN-RGVIRALREAGRAGKVVFVGHELT 221 (275)
T ss_pred cCCCChHHHHHHHHHHHHhCCCceEEEECCCCh-HHHHHHHHHcCCCCCcEEEEecCC
Confidence 221111111122222 2 3578888888765 5777777766543 6778887654
No 89
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=93.11 E-value=3.6 Score=35.65 Aligned_cols=180 Identities=12% Similarity=0.085 Sum_probs=92.0
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH--HHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av--~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
+.+.++++|+++..++.-. .+......+.+ +....+|.||+.+.+.- ....+.+.+ .+++++++|.....
T Consensus 21 ~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~-l~~~~vdgvi~~~~~~~~~~~~~~~l~~---~~ip~V~~~~~~~~--- 92 (267)
T cd01536 21 AEAAAKELGVELIVLDAQN-DVSKQIQQIED-LIAQGVDGIIISPVDSAALTPALKKANA---AGIPVVTVDSDIDG--- 92 (267)
T ss_pred HHHHHHhcCceEEEECCCC-CHHHHHHHHHH-HHHcCCCEEEEeCCCchhHHHHHHHHHH---CCCcEEEecCCCCc---
Confidence 3455667788877755532 11000111222 22347999998875432 223444443 36788888775322
Q ss_pred HHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCC-CeeEEEEeeeeee
Q 022234 143 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYTTEP 213 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G-~~v~~~~vY~~~~ 213 (300)
.. ++.. +.+..+ .+..+++.+.+...+.+++.++.+... ..-+.+.+++.| ..+.. .+....
T Consensus 93 ~~------~~~~-v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~--~~~~~~ 163 (267)
T cd01536 93 GN------RLAY-VGTDNYEAGRLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEIVA--VQDGNW 163 (267)
T ss_pred cc------eeEE-EecCHHHHHHHHHHHHHHHhCCCceEEEEEcccccchHHHHHHHHHHHHHhCCCcEEEE--EecCCC
Confidence 11 2221 222222 244555555543223478888866532 345667778774 44432 211111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCH
Q 022234 214 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 261 (300)
Q Consensus 214 ~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~ 261 (300)
......+.... + .++++|++++...+..+++.+.+.+. .++.++..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~~~~~~l~~~g~~~~i~ivg~d~ 216 (267)
T cd01536 164 DREKALQAMEDLLQANPDIDAIFAANDSMALGAVAALKAAGRKGDVKIVGVDG 216 (267)
T ss_pred cHHHHHHHHHHHHHhCCCccEEEEecCCchHHHHHHHHhcCCCCCceEEecCC
Confidence 11111112222 2 34788888887777777777776553 3677777764
No 90
>PRK09492 treR trehalose repressor; Provisional
Probab=92.91 E-value=4.9 Score=36.32 Aligned_cols=172 Identities=10% Similarity=0.043 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.++++|+.++.+.. ..+.+. ..+.+....+|++|+.+..... .+.+... ..+++++|...
T Consensus 82 ~~i~~~~~~~gy~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~~l~~~---~~pvv~i~~~~-- 149 (315)
T PRK09492 82 RTMLPAFYEQGYDPIIMES-----QFSPEKVNEHLGVLKRRNVDGVILFGFTGIT--EEMLAPW---QDKLVLLARDA-- 149 (315)
T ss_pred HHHHHHHHHcCCeEEEEec-----CCChHHHHHHHHHHHhcCCCEEEEeCCCccc--HHHHHhc---CCCEEEEeccC--
Confidence 4456778888988765432 112221 1122334679999987633211 1222222 34678887531
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCC--------ChhHHHHHHHhCCCeeEEEEeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK--------ASNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~--------~~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
. ++.. +..+.+ .+..+++.|.+. +.++|.|+.+.. ...-+.+.|+++|..+.. +.
T Consensus 150 ----~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~---~~ 213 (315)
T PRK09492 150 ----K------GFSS-VCYDDEGAIKLLMQRLYDQ--GHRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPVA---AL 213 (315)
T ss_pred ----C------CCcE-EEECcHHHHHHHHHHHHHc--CCCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCcee---ec
Confidence 2 3322 222332 344566667654 346899986432 123556778888876532 11
Q ss_pred eeeCCCCcHHHHHH-c-CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHH
Q 022234 211 TEPVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 262 (300)
Q Consensus 211 ~~~~~~~~~~~~~~-l-~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~ 262 (300)
.........+..+. + .++++|+..|-..+-.++..+.+.+..++.++.++..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~ai~~~~D~~A~g~~~al~~~g~~disvig~d~~ 267 (315)
T PRK09492 214 GGLSMQSGYELVAKVLTPETTALVCATDTLALGASKYLQEQGRDDIQVAGVGNT 267 (315)
T ss_pred CCCCchHHHHHHHHHhhcCCCEEEEcCcHHHHHHHHHHHHcCCCceEEEeeCch
Confidence 11111111112222 2 4689999999888888888887766567888888775
No 91
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=92.89 E-value=3.5 Score=36.54 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=93.3
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|++++..+... + .+..+..+.+.....|.||+++...-....+.+.+. .+.++..+|... .
T Consensus 22 ~gi~~~~~~~gy~~~i~~~~~--~-~~~~~~i~~l~~~~vdgiI~~~~~~~~~~~~~~~~~--~~~PiV~i~~~~----~ 92 (265)
T cd06354 22 EGLERAAKELGIEYKYVESKS--D-ADYEPNLEQLADAGYDLIVGVGFLLADALKEVAKQY--PDQKFAIIDAVV----D 92 (265)
T ss_pred HHHHHHHHHcCCeEEEEecCC--H-HHHHHHHHHHHhCCCCEEEEcCcchHHHHHHHHHHC--CCCEEEEEeccc----C
Confidence 345577888999988875431 1 111122222335789999998754333333333321 367899998642 1
Q ss_pred H-HhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC-----h-hHHHHHHHhCC---CeeEEEEeeeee
Q 022234 143 E-VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-----S-NEIEEGLSNRG---FEVVRLNTYTTE 212 (300)
Q Consensus 143 ~-~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-----~-~~L~~~L~~~G---~~v~~~~vY~~~ 212 (300)
. . ++.. +....+.+...+..+.....+.+++.++.+... + .-+.+.+++.| ..+....++...
T Consensus 93 ~~~------~~~~-v~~d~~~a~~~a~~ll~~~~G~~~I~~i~~~~~~~~~~r~~gf~~~~~~~g~~~~~~~~~~~~~~~ 165 (265)
T cd06354 93 DPP------NVAS-IVFKEEEGSFLAGYLAALMTKTGKVGFIGGMDIPLIRRFEAGFEAGVKYVNPGVPDIEVLVQYAGS 165 (265)
T ss_pred CCC------cEEE-EEecchhHHHHHHHHHHhhcCCCeEEEEecccChHHHHHHHHHHHHHHHHhccCCCceEEEEEcCc
Confidence 1 1 2221 122222222222232221113478999976432 2 34566677777 554443333321
Q ss_pred eC-CCCcHHHHHH-c-CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCH
Q 022234 213 PV-HHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 261 (300)
Q Consensus 213 ~~-~~~~~~~~~~-l-~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~ 261 (300)
.. .....+..++ + ..+|+|+.++-..+-..+..+++.+ +.+++++.
T Consensus 166 ~~~~~~~~~~~~~ll~~~pdaI~~~nd~~A~gv~~al~~~g---isIvGfD~ 214 (265)
T cd06354 166 FNDPAKGKEIAQAMYDQGADVIFAAAGGTGNGVFQAAKEAG---VYAIGVDS 214 (265)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEECCCCCchHHHHHHHhcC---CeEEEecC
Confidence 11 1111122222 2 3579988888777777777777653 66666655
No 92
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=92.87 E-value=1.7 Score=35.16 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=75.1
Q ss_pred CCCeEEEeCCCCch-----HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC-----hHHHHHHHH
Q 022234 49 SNPKVVVTRERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS-----PEAGSVFLE 118 (300)
Q Consensus 49 ~g~~VlitR~~~~~-----~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS-----~~av~~~~~ 118 (300)
.+++|++.-+..+. .-++..|+.+|++|+++-.-.. .+++.+.....+.|.|..++ ...++.+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp-----~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~ 76 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTS-----QEEFIDAAIETDADAILVSSLYGHGEIDCRGLRE 76 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHH
Confidence 56788887666543 3566788999999998765321 23444444456777777665 334566667
Q ss_pred HHHHcCCCCceEEEEccch---------HHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 119 AWKEAGTPNVRIGVVGAGT---------ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 119 ~l~~~~~~~~~i~aVG~~T---------a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
.+++.+..+.++++-|.-+ .+.++++ |+...|.|.. ..+..+..|.+.
T Consensus 77 ~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~------G~~~vf~~~~-~~~~i~~~l~~~ 133 (137)
T PRK02261 77 KCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEM------GFDRVFPPGT-DPEEAIDDLKKD 133 (137)
T ss_pred HHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHHHH
Confidence 7777767688888888652 2478888 9987776554 666676666543
No 93
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=92.85 E-value=3.5 Score=37.51 Aligned_cols=176 Identities=10% Similarity=0.071 Sum_probs=93.6
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
.+.+.++++|+.++..... .+.+. ..+.+.....|.||+.+... .......+.+ .+.+++.+|....
T Consensus 81 ~i~~~~~~~gy~~~i~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~- 151 (327)
T TIGR02417 81 ELEQQCREAGYQLLIACSD-----DNPDQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQN---EGLPVVALDRSLD- 151 (327)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHh---cCCCEEEEccccC-
Confidence 4556667889988765431 12111 11222346799999876432 2223333433 3678999986531
Q ss_pred HHHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. ++.. +..+.+. +..+++.|.+. ..++|+++.+... ..-+.+.|+++|..+. .++..
T Consensus 152 ---~~------~~~~-V~~dn~~~~~~~~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~--~~~~~ 217 (327)
T TIGR02417 152 ---DE------HFCS-VISDDVDAAAELIERLLSQ--HADEFWYLGAQPELSVSRDRLAGFRQALKQATLEVE--WVYGG 217 (327)
T ss_pred ---CC------CCCE-EEeCcHHHHHHHHHHHHHC--CCCeEEEEeCcccchhHHHHHHHHHHHHHHcCCChH--hEEeC
Confidence 12 3322 2233332 34455666554 2468999987543 2345667788886532 12221
Q ss_pred eeCCCCcHHHHHH-c---C-CCCEEEEEChHHHHHHHHHhcccC--CCCceEEEeCHH
Q 022234 212 EPVHHVDQTVLKQ-A---L-SIPVVAVASPSAVRSWVNLISDTE--QWSNSVACIGET 262 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l---~-~~d~IvftS~s~v~~~~~~~~~~~--~~~~~vv~IG~~ 262 (300)
........+.... + . .+++|++.+-..+..++..+.+.+ ..++.+++++..
T Consensus 218 ~~~~~~~~~~~~~ll~~~~~~~~Ai~~~~D~~A~g~~~al~~~g~vP~dvsvigfd~~ 275 (327)
T TIGR02417 218 NYSRESGYQMFAKLCARLGRLPQALFTTSYTLLEGVLDYMLERPLLDSQLHLATFGDN 275 (327)
T ss_pred CCChHHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEECCc
Confidence 1111111112222 2 2 478999988777766666665544 237788888764
No 94
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=92.81 E-value=2 Score=37.52 Aligned_cols=191 Identities=13% Similarity=0.117 Sum_probs=106.6
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchh----HHHhhhcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDR----LSSVLNDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~----l~~~l~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
..+.+.++++|+++..+ .-...+.+. +++.+ ...+|.||++.... ...+++.+.+. +++++.++..
T Consensus 18 ~g~~~~a~~~g~~~~~~----~~~~~d~~~q~~~i~~~i-~~~~d~Iiv~~~~~~~~~~~l~~~~~~---gIpvv~~d~~ 89 (257)
T PF13407_consen 18 KGAKAAAKELGYEVEIV----FDAQNDPEEQIEQIEQAI-SQGVDGIIVSPVDPDSLAPFLEKAKAA---GIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHTCEEEEE----EESTTTHHHHHHHHHHHH-HTTESEEEEESSSTTTTHHHHHHHHHT---TSEEEEESST
T ss_pred HHHHHHHHHcCCEEEEe----CCCCCCHHHHHHHHHHHH-HhcCCEEEecCCCHHHHHHHHHHHhhc---CceEEEEecc
Confidence 45667788889998887 111123222 23332 46799999875443 55556666553 6799998877
Q ss_pred hHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCChh-------HHHHHHHhCCCeeEEEEe
Q 022234 137 TASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKASN-------EIEEGLSNRGFEVVRLNT 208 (300)
Q Consensus 137 Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~-------~L~~~L~~~G~~v~~~~v 208 (300)
.. ... .....+.+.. ..+..+.+.|.+....+.+++++.+..+.. -+.+.|++.+ .+..+..
T Consensus 90 --~~-~~~------~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~-~~~~~~~ 159 (257)
T PF13407_consen 90 --EA-PDS------PRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEYP-GVEIVDE 159 (257)
T ss_dssp --HH-TTS------TSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHCT-TEEEEEE
T ss_pred --cc-ccc------cceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHHHhhcc-eeeeeee
Confidence 11 111 1211222222 224555666655443447999887776533 4556677754 5555554
Q ss_pred eeeeeCCCCcHH---HHHH-c--CCCCEEEEEChHHHHHHHHHhcccCCC-CceEEEe--CHHHHHHHHHcCCC
Q 022234 209 YTTEPVHHVDQT---VLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQW-SNSVACI--GETTASAAKRLGLK 273 (300)
Q Consensus 209 Y~~~~~~~~~~~---~~~~-l--~~~d~IvftS~s~v~~~~~~~~~~~~~-~~~vv~I--G~~Ta~~l~~~G~~ 273 (300)
|.. .....+. .... + .++++|+.++...+....+.+.+.+.. +..++++ ++.+.+.+++-.+.
T Consensus 160 ~~~--~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~g~~~al~~~g~~~~~~v~g~d~~~~~~~~i~~g~~~ 231 (257)
T PF13407_consen 160 YEY--TDWDPEDARQAIENLLQANPVDAIIACNDGMALGAAQALQQAGRAGKVIVVGFDGSPEALEAIKDGNIT 231 (257)
T ss_dssp EEE--CTTSHHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEEECHHHHHHHHHTTSSS
T ss_pred eec--cCCCHHHHHHHHHHhhhcCCceEEEeCCChHHHHHHHHHHHcCCcccceeecCCCCHHHHHHHHCCCCe
Confidence 332 1222221 1111 2 248899989989888888888776532 4446665 45555666554444
No 95
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=92.65 E-value=2.8 Score=33.49 Aligned_cols=97 Identities=13% Similarity=0.208 Sum_probs=63.1
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh--H---HHHHHHHHhcccCCCCceEEEeC
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP--S---AVRSWVNLISDTEQWSNSVACIG 260 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~--s---~v~~~~~~~~~~~~~~~~vv~IG 260 (300)
+.+.+...|+.+|++|..+-+.. +++++.+.. .+.|+|..+|- . ..+.+.+.+++.++.+.++++=|
T Consensus 15 Gkniv~~~L~~~GfeVidLG~~v------~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG 88 (128)
T cd02072 15 GNKILDHAFTEAGFNVVNLGVLS------PQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGG 88 (128)
T ss_pred HHHHHHHHHHHCCCEEEECCCCC------CHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEEC
Confidence 45667778999999886555432 233344332 47888887662 2 34555666666555567777766
Q ss_pred HH---------HHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 022234 261 ET---------TASAAKRLGLKNVYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 261 ~~---------Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~ 291 (300)
.. ..+.++++|+..++ ++..+++.+++.|.
T Consensus 89 ~~~i~~~d~~~~~~~L~~~Gv~~vf-~pgt~~~~i~~~l~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVF-APGTPPEEAIADLK 127 (128)
T ss_pred CCCCChhhhHHHHHHHHHcCCCEEE-CcCCCHHHHHHHHh
Confidence 42 33669999998866 45558888888775
No 96
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=92.59 E-value=2.9 Score=38.50 Aligned_cols=178 Identities=10% Similarity=0.065 Sum_probs=93.9
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCce-EEEEccchHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVR-IGVVGAGTAS 139 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~-i~aVG~~Ta~ 139 (300)
.+.+.++++|+.++..... .+.+...+. +.....|.||+.+...-......+.+ ..+ ++.+|...
T Consensus 80 gi~~~~~~~gy~~~~~~~~-----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~----~~p~vV~i~~~~-- 148 (346)
T PRK10401 80 AVDLVAQQHQKYVLIGNSY-----HEAEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMD----QIPGMVLINRVV-- 148 (346)
T ss_pred HHHHHHHHCCCEEEEEcCC-----CChHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHh----cCCCEEEEeccc--
Confidence 3456677889887654321 121211122 23467999999864211111122222 233 77777532
Q ss_pred HHHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
... ++.. +..+.+. +....+.|... +.+++.++.+... ..-+.+.|+++|..+....++..
T Consensus 149 --~~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~ 217 (346)
T PRK10401 149 --PGY------AHRC-VCLDNVSGARMATRMLLNN--GHQRIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTG 217 (346)
T ss_pred --CCC------CCCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecC
Confidence 112 3222 2223222 33445556544 3478998876542 23466788888876544333332
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 212 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
........+.... + .++++|+..+-..+..+++.+.+.+. .++.+++++...
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvigfD~~~ 276 (346)
T PRK10401 218 TPDMQGGEAAMVELLGRNLQLTAVFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIP 276 (346)
T ss_pred CCChHHHHHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeCCch
Confidence 1111111112222 2 25799999999988888888877653 478888887654
No 97
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=92.55 E-value=3.5 Score=37.91 Aligned_cols=178 Identities=9% Similarity=0.018 Sum_probs=93.1
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCce-EEEEccchHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVR-IGVVGAGTAS 139 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~-i~aVG~~Ta~ 139 (300)
.+.+.++++|+.++..... .+.+...+. +....+|.||+.+...-......+.+ +.+ +++++....
T Consensus 80 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~----~~p~vV~i~~~~~- 149 (343)
T PRK10727 80 AVEQVAYHTGNFLLIGNGY-----HNEQKERQAIEQLIRHRCAALVVHAKMIPDAELASLMK----QIPGMVLINRILP- 149 (343)
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHh----cCCCEEEEecCCC-
Confidence 3445677789876543321 122211112 22467999999764211111222222 344 777875421
Q ss_pred HHHHHhhccCCCccccccCCCCcH-HHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKATG-KILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~~~-e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. ++.. +..+.+.+ ...++.|.+. +.+++.++.+... ..-+.+.|+++|..+....++..
T Consensus 150 ---~~------~~~~-V~~Dn~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~ 217 (343)
T PRK10727 150 ---GF------ENRC-IALDDRYGAWLATRHLIQQ--GHTRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFG 217 (343)
T ss_pred ---CC------CCCE-EEECcHHHHHHHHHHHHHC--CCccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeC
Confidence 12 2221 22333332 3344555553 3468999876542 23466788888876544323221
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 212 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
........+..+. + ..+++|+..+-..+-..+..+.+.+. .++.+++++...
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disVigfD~~~ 276 (343)
T PRK10727 218 EPDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVL 276 (343)
T ss_pred CCChhHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEeecCcH
Confidence 1111111112222 2 25799999988888778777777653 478888887653
No 98
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=92.52 E-value=2.2 Score=34.10 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=66.5
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-----HHHHHHHHHHHcCCCCceEEEEccc
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-----av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
..-.+..|+.+|++|+.+..-.. .+++-+.....+.|.|..+|-+ ..+.+.+.+++.+..+.++++=|.-
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~-----~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSP-----QEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 34677889999999999877432 2333333335678888776633 4566777777877767888887763
Q ss_pred ---------hHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 137 ---------TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 137 ---------Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
..+.|+++ |+...|.|.. ..+.+++.|.
T Consensus 91 ~i~~~d~~~~~~~L~~~------Gv~~vf~pgt-~~~~i~~~l~ 127 (128)
T cd02072 91 VVGKQDFEDVEKRFKEM------GFDRVFAPGT-PPEEAIADLK 127 (128)
T ss_pred CCChhhhHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHh
Confidence 22459998 9988777665 6666766653
No 99
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=92.52 E-value=1.9 Score=35.10 Aligned_cols=108 Identities=24% Similarity=0.413 Sum_probs=74.9
Q ss_pred CCCeEEEeCCC-----CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-----HHHHH
Q 022234 49 SNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-----SVFLE 118 (300)
Q Consensus 49 ~g~~VlitR~~-----~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-----~~~~~ 118 (300)
+..||++.... .++.-+++.|++.|++|+..++.++. + +.+.+++ ..+.|.|+..|-.+- ..+.+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp---~-e~v~aA~-~~dv~vIgvSsl~g~h~~l~~~lve 85 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTP---E-EAVRAAV-EEDVDVIGVSSLDGGHLTLVPGLVE 85 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCH---H-HHHHHHH-hcCCCEEEEEeccchHHHHHHHHHH
Confidence 45678877553 35678999999999999999997753 1 2233333 578999999887764 44555
Q ss_pred HHHHcCCCCceEEEEcc---chHHHHHHHhhccCCCccccccCCCCcHHHHH
Q 022234 119 AWKEAGTPNVRIGVVGA---GTASIFEEVIQSSKCSLDVAFSPSKATGKILA 167 (300)
Q Consensus 119 ~l~~~~~~~~~i~aVG~---~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~ 167 (300)
.+++.+.++..+++=|. ...+.++++ |+.-.|.|...-.+.+.
T Consensus 86 ~lre~G~~~i~v~~GGvip~~d~~~l~~~------G~~~if~pgt~~~~~~~ 131 (143)
T COG2185 86 ALREAGVEDILVVVGGVIPPGDYQELKEM------GVDRIFGPGTPIEEALS 131 (143)
T ss_pred HHHHhCCcceEEeecCccCchhHHHHHHh------CcceeeCCCCCHHHHHH
Confidence 66777777777666444 445568999 99888888654444443
No 100
>PRK09526 lacI lac repressor; Reviewed
Probab=91.79 E-value=3.3 Score=37.92 Aligned_cols=177 Identities=10% Similarity=-0.005 Sum_probs=93.7
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCch---hHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~---~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|++++.+..-. .+.+ ...+.+....+|.||+.++..-......... ..+.+++.++..
T Consensus 84 gi~~~a~~~g~~~~i~~~~~----~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~~~~~~--~~~iPvV~~d~~---- 153 (342)
T PRK09526 84 AIKSRADQLGYSVVISMVER----SGVEACQAAVNELLAQRVSGVIINVPLEDADAEKIVAD--CADVPCLFLDVS---- 153 (342)
T ss_pred HHHHHHHHCCCEEEEEeCCC----ChHHHHHHHHHHHHhcCCCEEEEecCCCcchHHHHHhh--cCCCCEEEEecc----
Confidence 44566778898887653211 1111 1112223468999998633222222111111 136788888752
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
... ++.. +..+.+. +..+++.|.+. +.++++++.|.... .-+.+.|++.|..+.. ++...
T Consensus 154 -~~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~~~--~~~~~ 221 (342)
T PRK09526 154 -PQS------PVNS-VSFDPEDGTRLGVEHLVEL--GHQRIALLAGPESSVSARLRLAGWLEYLTDYQLQPIA--VREGD 221 (342)
T ss_pred -CCC------CCCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCcce--EEeCC
Confidence 112 3221 2233322 34556666654 34799999775432 2456778888875422 12111
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 213 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 213 ~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
.......+.... + ..+++|+.++-..+..+++.+.+.+. .++.++.++..
T Consensus 222 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~disvig~d~~ 278 (342)
T PRK09526 222 WSAMSGYQQTLQMLREGPVPSAILVANDQMALGVLRALHESGLRVPGQISVIGYDDT 278 (342)
T ss_pred CchHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeeCCC
Confidence 111101111222 2 25789999998888888888877653 36778888764
No 101
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=91.76 E-value=2.2 Score=37.45 Aligned_cols=200 Identities=9% Similarity=0.025 Sum_probs=108.6
Q ss_pred HHHHHHHHhCC-CCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEccchHHH
Q 022234 63 GKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 63 ~~l~~~L~~~G-~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~-~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
..+.+.++++| +.++..+.-. ...+.+...+ ...+|.+|+.|...-.. ....+.+ .+.+++.+|.....
T Consensus 18 ~~i~~~l~~~g~~~l~~~~~~~----~~~~~~~~~~-~~~vdGvIi~~~~~~~~~~~~~~~~---~~~PvV~i~~~~~~- 88 (247)
T cd06276 18 NSFVNTLGKNAQVDLYFHHYNE----DLFKNIISNT-KGKYSGYVVMPHFKNEIQYFLLKKI---PKEKLLILDHSIPE- 88 (247)
T ss_pred HHHHHHHHhcCcEEEEEEcCch----HHHHHHHHHH-hcCCCEEEEecCCCCcHHHHHHhcc---CCCCEEEEcCcCCC-
Confidence 45667788889 7776654332 1111222222 47899999987642222 2222221 35789999975311
Q ss_pred HHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 141 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
.. ++..........+..+++.|.++..+.+++.++.+... ..-+.+.|+++|+.+... .+
T Consensus 89 --~~------~~~~V~~D~~~~~~~a~~~L~~~~~G~~~Ia~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~-~~----- 154 (247)
T cd06276 89 --GG------EYSSVAQDFEKAIYNALQEGLEKLKKYKKLILVFPNKTAIPKEIKRGFERFCKDYNIETEII-ND----- 154 (247)
T ss_pred --CC------CCCeEEEccHHHHHHHHHHHHHHhcCCCEEEEEecCccHhHHHHHHHHHHHHHHcCCCcccc-cc-----
Confidence 12 32222222222344555666551113479999977542 234566788888765321 10
Q ss_pred CCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 022234 215 HHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 215 ~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~ 291 (300)
.. . ..+.+.|+|+++|-..+..++..+.+.+. .++.+++++..-....-.-++..+. .+.+.|.+...
T Consensus 155 -~~-~---~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~iP~disvigfd~~~~~~~~~p~lttv~----~~~~~~g~~a~ 225 (247)
T cd06276 155 -YE-N---REIEKGDLYIILSDTDLVFLIKKARESGLLLGKDIGIISYNDTPLKEILRNGITTIS----TDFENMGKKAA 225 (247)
T ss_pred -cc-h---hhccCCcEEEEeCHHHHHHHHHHHHHcCCcCCceeEEEEecCchhhhccCCCceEEe----cCHHHHHHHHH
Confidence 00 0 01234599999999999988888877653 4788999987633333223333322 34455555544
Q ss_pred HHH
Q 022234 292 EAL 294 (300)
Q Consensus 292 ~~~ 294 (300)
+.+
T Consensus 226 ~~L 228 (247)
T cd06276 226 EMV 228 (247)
T ss_pred HHH
Confidence 433
No 102
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=91.63 E-value=4.9 Score=32.39 Aligned_cols=110 Identities=19% Similarity=0.252 Sum_probs=70.3
Q ss_pred CeEEEeCCCCc-----hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH-----HHHHHHHH
Q 022234 51 PKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA-----GSVFLEAW 120 (300)
Q Consensus 51 ~~VlitR~~~~-----~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a-----v~~~~~~l 120 (300)
.+|++.-...+ ..-+...|+.+|++|+.+..-.. .+++-+.....+.|.|..+|-++ .+.+.+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~-----~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l 76 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSP-----QEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKC 76 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHH
Confidence 35666655432 34567899999999999887432 23333333355788887766443 45566677
Q ss_pred HHcCCCCceEEEEccc------h---HHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 121 KEAGTPNVRIGVVGAG------T---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 121 ~~~~~~~~~i~aVG~~------T---a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
++.+..+.++++=|.- . .+.|++. |+...|.|.. ..+.+++.|.+
T Consensus 77 ~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~------Gv~~vF~pgt-~~~~iv~~l~~ 130 (134)
T TIGR01501 77 DEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEM------GFDRVFAPGT-PPEVVIADLKK 130 (134)
T ss_pred HHCCCCCCEEEecCCcCcChhhhHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHHH
Confidence 7777767665554421 1 2358888 9988777665 56777777754
No 103
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=91.61 E-value=4 Score=34.73 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=85.3
Q ss_pred cCCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCC
Q 022234 99 DTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKK 176 (300)
Q Consensus 99 ~~~~d~ivFTS~~av~~-~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~ 176 (300)
...+|.|+.+....... ....+.+ .++++++++....... .. .++. .+.+.. ..+..+++.+.+..
T Consensus 56 ~~~~d~ii~~~~~~~~~~~~~~~~~---~~ip~v~~~~~~~~~~-~~-----~~~~-~~~~~~~~~~~~~~~~l~~~~-- 123 (269)
T cd01391 56 QQGVDGIIGPPSSSSALAVVELAAA---AGIPVVSLDATAPDLT-GY-----PYVF-RVGPDNEQAGEAAAEYLAEKG-- 123 (269)
T ss_pred HcCCCEEEecCCCHHHHHHHHHHHH---cCCcEEEecCCCCccC-CC-----ceEE-EEcCCcHHHHHHHHHHHHHhC--
Confidence 45799999877654332 4444443 3678888877653321 11 0222 233333 23556666666553
Q ss_pred CCEEEEEcCCC-C-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--C-CCCEEEEEChHHHHHHHHHhc
Q 022234 177 KCTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--L-SIPVVAVASPSAVRSWVNLIS 247 (300)
Q Consensus 177 ~~~vL~~rg~~-~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~-~~d~IvftS~s~v~~~~~~~~ 247 (300)
.+++.++.+.. . ...+.+.+++.|..+.....+.... +.......+.+ . +.++|++.+...+..++..+.
T Consensus 124 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~ 202 (269)
T cd01391 124 WKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDT-EKGFQALLQLLKAAPKPDAIFACNDEMAAGALKAAR 202 (269)
T ss_pred CceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCc-cccHHHHHHHHhcCCCCCEEEEcCchHHHHHHHHHH
Confidence 46888887766 2 2456667777775543333222211 11222233333 2 579999998888888888887
Q ss_pred ccCC--CCceEEEeCHH
Q 022234 248 DTEQ--WSNSVACIGET 262 (300)
Q Consensus 248 ~~~~--~~~~vv~IG~~ 262 (300)
+.+. .+..+++++..
T Consensus 203 ~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 203 EAGLTPGDISIIGFDGS 219 (269)
T ss_pred HcCCCCCCCEEEecccc
Confidence 7654 36677766544
No 104
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=91.22 E-value=9.6 Score=33.82 Aligned_cols=197 Identities=10% Similarity=0.040 Sum_probs=95.5
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHH---hhhcCCccEEEEeCh-HHHHHHHHHHHHcCCCCceEEEEccchH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSS---VLNDTIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~---~l~~~~~d~ivFTS~-~av~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
..+.+.++++|+.++..+...-... +.+.... .+...+.|.||++.. .+.....+.+.+. +.+++.++..+.
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~---~~p~V~i~~~~~ 95 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPGI-DHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLAS---GKTKIILQNITT 95 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCccc-CHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhC---CCCeEEEeCCCC
Confidence 4566778889998887654321111 1111111 223468999999853 3233333333332 334455532211
Q ss_pred HHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhC-CCeeEEEEeee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTYT 210 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~-G~~v~~~~vY~ 210 (300)
. .+... +..++. .+.... ..+..+++.|.+.....+++.++.+... ..-+.+.|+++ |..+. ..+.
T Consensus 96 ~-~~~~~--~~~~~~-~V~~d~~~~g~~~~~~L~~~~~g~~~i~~l~~~~~~~~~~R~~gf~~al~~~~~~~~~--~~~~ 169 (280)
T cd06303 96 P-VKAWL--KHQPLL-YVGFDHAAGARLLADYFIKRYPNHARYAMLYFSPGYISTARGDTFIDCVHARNNWTLT--SEFY 169 (280)
T ss_pred C-ccccc--cCCCce-EeCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCcchhHHHHHHHHHHHhCCCceEE--Eeec
Confidence 0 00000 000111 112222 2234555666552223478888876432 23456677777 55432 1222
Q ss_pred eeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHHH--HHHHH
Q 022234 211 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETTA--SAAKR 269 (300)
Q Consensus 211 ~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~Ta--~~l~~ 269 (300)
.........+..+. + .++++|+.++-..+-..++.+.+.+. .++.++.++..-. ..+.+
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~l~al~~~G~~~dv~vvg~d~~~~~~~~~~~ 235 (280)
T cd06303 170 TDATRQKAYQATSDILSNNPDVDFIYACSTDIALGASDALKELGREDDILINGWGGGSAELDAIQQ 235 (280)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEECCcHHHHHHHHHHHHcCCCCCcEEEecCCCHHHHHHHHc
Confidence 11111111111222 2 35899999988888777777776654 3678888875332 44443
No 105
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=91.12 E-value=7.1 Score=34.09 Aligned_cols=180 Identities=12% Similarity=0.079 Sum_probs=93.3
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCC--chhHHHhhhcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccchH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~--~~~l~~~l~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
..+.+.++++|+++...+.- ..++ .+.+.. +.....|++|+++.. .....++.+.+ .+++++.++...
T Consensus 19 ~~i~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~-~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~- 90 (267)
T cd06322 19 NAMKEEAKKQKVNLIVSIAN---QDLNKQLSDVED-FITKKVDAIVLSPVDSKGIRAAIAKAKK---AGIPVITVDIAA- 90 (267)
T ss_pred HHHHHHHHhcCCEEEEecCC---CCHHHHHHHHHH-HHHcCCCEEEEcCCChhhhHHHHHHHHH---CCCCEEEEcccC-
Confidence 45666778889888654321 1111 111222 224579999998653 23333444444 357888887531
Q ss_pred HHHHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhC-CCeeEEEEeee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTYT 210 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~-G~~v~~~~vY~ 210 (300)
... +....+..+.+. +...++.|.+.....++++++.+... ..-+.+.+++. |..+... +
T Consensus 91 ---~~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~--~- 158 (267)
T cd06322 91 ---EGV------AVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYPTVQSVVDRVRGFKEALADYPNIKIVAV--Q- 158 (267)
T ss_pred ---CCC------ceEEEEecChHHHHHHHHHHHHHHhCCCceEEEEecCCCccHHHHHHHHHHHHHhCCCcEEEEe--c-
Confidence 111 111112233322 23345555543223468888865432 23455677777 7655321 1
Q ss_pred eeeCCCCcHH----HHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHH
Q 022234 211 TEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 262 (300)
Q Consensus 211 ~~~~~~~~~~----~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~ 262 (300)
.....+...+ +++...++++|+..+-..+...++.+.+.+..++.+++++..
T Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~di~vvg~d~~ 214 (267)
T cd06322 159 PGITRAEALTAAQNILQANPDLDGIFAFGDDAALGAVSAIKAAGRDNVKVIGFDGM 214 (267)
T ss_pred CCCChHHHHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHHHHCCCCCeEEEEecCC
Confidence 1111111111 121123579999999888888877777655456788887543
No 106
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=90.85 E-value=5.1 Score=35.22 Aligned_cols=179 Identities=11% Similarity=0.058 Sum_probs=93.8
Q ss_pred HHHHHHHhC-CCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccch
Q 022234 64 KLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
.+.+.+.+. |++++..... .+.....+.+ .....|.||+.+.. ........+.+ .+++++.+|...
T Consensus 20 ~i~~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~ 91 (270)
T cd06308 20 EIQREASNYPDVELIIADAA-----DDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYR---AGIPVILLDRKI 91 (270)
T ss_pred HHHHHHHhcCCcEEEEEcCC-----CCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHH---CCCCEEEeCCCC
Confidence 344556665 7888654321 1221111122 23578999987643 22333333333 468899998642
Q ss_pred HHHHHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhC-CCeeEEEEe
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNT 208 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~~~v 208 (300)
.. . +....+..+.+. +...++.|.+.....++++++.+.... .-+.+.|+++ |.++.. .
T Consensus 92 ~~----~------~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~~~~--~ 159 (270)
T cd06308 92 LS----D------KYTAYIGADNYEIGRQAGEYIANLLPGKGNILEIWGLEGSSPAIERHDGFKEALSKYPKIKIVA--Q 159 (270)
T ss_pred CC----c------cceEEeecCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCchHHHHHHHHHHHHHHCCCCEEEE--e
Confidence 11 1 111112233332 344455555532345799999765432 2345567777 765432 2
Q ss_pred eeeeeCCCCc-H---HHHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHH
Q 022234 209 YTTEPVHHVD-Q---TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 262 (300)
Q Consensus 209 Y~~~~~~~~~-~---~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~ 262 (300)
+......... . ++++...++++|+..+-..+...++.+.+.+. .++.+++++..
T Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~~ 218 (270)
T cd06308 160 QDGDWLKEKAEEKMEELLQANPDIDLVYAHNDPMALGAYLAAKRAGREKEIKFIGIDGL 218 (270)
T ss_pred cCCCccHHHHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Confidence 2111111111 1 12222235899999999988888888877654 46788888653
No 107
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.80 E-value=11 Score=33.09 Aligned_cols=153 Identities=9% Similarity=0.063 Sum_probs=80.8
Q ss_pred cCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCC
Q 022234 99 DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGK 175 (300)
Q Consensus 99 ~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~ 175 (300)
....|.||+.+.. +..-..+.+.+ .+.+++.+|.... +....+..+.+ .+..+++.|.+...
T Consensus 55 ~~~~dgiIi~~~~~~~~~~~i~~~~~---~~ipvv~~~~~~~------------~~~~~V~~d~~~~g~~~~~~l~~~~~ 119 (271)
T cd06321 55 AAKVDLILLNAVDSKGIAPAVKRAQA---AGIVVVAVDVAAE------------GADATVTTDNVQAGEISCQYLADRLG 119 (271)
T ss_pred HhCCCEEEEeCCChhHhHHHHHHHHH---CCCeEEEecCCCC------------CccceeeechHHHHHHHHHHHHHHhC
Confidence 4679999997643 22333333333 3678999986421 11111222222 23455555555422
Q ss_pred CCCEEEEEcCCCC------hhHHHHHHHhC-CCeeEEEEeeeeeeCCCCcHH----HHHHcCCCCEEEEEChHHHHHHHH
Q 022234 176 KKCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVN 244 (300)
Q Consensus 176 ~~~~vL~~rg~~~------~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~----~~~~l~~~d~IvftS~s~v~~~~~ 244 (300)
+.+++.++.|... ..-+.+.+++. |.+.... .+..........+ +++...++++|+..+-..+...+.
T Consensus 120 g~~~i~~i~g~~~~~~~~R~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 198 (271)
T cd06321 120 GKGNVAILNGPPVSAVLDRVAGCKAALAKYPGIKLLSD-DQNGKGSRDGGLRVMQGLLTRFPKLDGVFAINDPTAIGADL 198 (271)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEee-ecCCCCChhhHHHHHHHHHHhCCCCCEEEECCchhHHHHHH
Confidence 3468999977643 23344556665 4432111 1111111111111 222123579999999888888888
Q ss_pred HhcccCCCCceEEEeC--HHHHHHH
Q 022234 245 LISDTEQWSNSVACIG--ETTASAA 267 (300)
Q Consensus 245 ~~~~~~~~~~~vv~IG--~~Ta~~l 267 (300)
.+.+.+..++.+++++ +.....+
T Consensus 199 al~~~g~~di~v~g~d~~~~~~~~~ 223 (271)
T cd06321 199 AAKQAGRNDIKITSVDGAPDAEKAI 223 (271)
T ss_pred HHHHcCCCCcEEEEecCCHHHHHHH
Confidence 8887766678888875 3344443
No 108
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.77 E-value=2.8 Score=36.81 Aligned_cols=181 Identities=15% Similarity=0.120 Sum_probs=91.9
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.+.+.++++|+++..++.. .+.+...+. +.....|+||+..... .....+.+.+ .+++++.+|....
T Consensus 21 g~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~---~~iPvV~~~~~~~ 92 (275)
T cd06317 21 AFQAAAEEDGVEVIVLDAN-----GDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQ---AGIPVVITNSNIS 92 (275)
T ss_pred HHHHHHHhcCCEEEEEcCC-----cCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHH---CCCcEEEeCCCCC
Confidence 4455667789887765431 122211112 2235799998876432 2333344443 4678888876421
Q ss_pred HHHHHHhhccCCCccc--cc-cCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEE
Q 022234 139 SIFEEVIQSSKCSLDV--AF-SPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~--~~-~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~ 207 (300)
.. +... .+ .++.+ .+...++.+.+...+.++|+++.+.... .-+.+.++++|..+..+.
T Consensus 93 ----~~------~~~~v~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~ 162 (275)
T cd06317 93 ----EK------GFEFIKSFTGPDDISQGERSAEAMCKALGGKGQIVVIAGQPGNGTAIERQKGFEDELAEVCPGVEVLD 162 (275)
T ss_pred ----CC------ccchhhhhccccHHHHHHHHHHHHHHHcCCCceEEEEecCCCCchHHHHHHHHHHHHHhhCCCCEEEe
Confidence 11 1110 01 12221 2334445554432233689988664321 335567778775554443
Q ss_pred eeeeeeCCCCc----HHHHHHc-CCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHH
Q 022234 208 TYTTEPVHHVD----QTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 262 (300)
Q Consensus 208 vY~~~~~~~~~----~~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~ 262 (300)
.+......... .++++.. .++++|+..+-..+..+++.+.+.+. .++.+++++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~dv~v~g~d~~ 223 (275)
T cd06317 163 TQPADWDREKAQVAMEALITKFGDDIDGVYAGDDNMARGALNAAKEAGLAGGIVIVGANNF 223 (275)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCccEEEECCCcHHHHHHHHHHhcCCcCCcEEEEeCCC
Confidence 33211111111 1122222 24788888887777777777776654 36788877543
No 109
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.47 E-value=13 Score=33.54 Aligned_cols=200 Identities=12% Similarity=0.066 Sum_probs=96.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHH---hhhcC--CccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEccch
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSS---VLNDT--IFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~---~l~~~--~~d~ivFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
.+.+.++++|++++.+.. . .+.+.... .+... ..|+||+++... .....+.+.+ .+++++.++...
T Consensus 21 gi~~~~~~~g~~v~~~~~---~--~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~---~giPvV~~~~~~ 92 (305)
T cd06324 21 FMQAAADDLGIELEVLYA---E--RDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEG---AGVKLFLVNSGL 92 (305)
T ss_pred HHHHHHHhcCCeEEEEeC---C--CCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHh---CCCeEEEEecCC
Confidence 455677788998776532 1 12221111 12235 899999986542 3333344433 367899998654
Q ss_pred HH-HHHHHhhcc---CCCccccccCCCCc-HHHHHHhcccCCC------CCCEEEEEcCCCC-------hhHHHHHHHhC
Q 022234 138 AS-IFEEVIQSS---KCSLDVAFSPSKAT-GKILASELPKNGK------KKCTVLYPASAKA-------SNEIEEGLSNR 199 (300)
Q Consensus 138 a~-~L~~~~~~~---~~G~~~~~~p~~~~-~e~L~~~L~~~~~------~~~~vL~~rg~~~-------~~~L~~~L~~~ 199 (300)
.. ..+.. ++. ..++-..+.+..+. ++.+++.|.+... +..+++++.+... ..-+.+.++++
T Consensus 93 ~~~~~~~~-~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~ 171 (305)
T cd06324 93 TEAQAREL-GPPREKFPDWLGQLLPNDEEAGYLMAEALISQARSVQAPGGRIDLLAISGDPTTPAAILREAGLRRALAEH 171 (305)
T ss_pred Ccchhhcc-cccccccCceeeeeccCcHHHHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCChHHHHHHHHHHHHHHHC
Confidence 22 11111 000 00111112233322 3444555544321 1125888876543 22345667777
Q ss_pred C-CeeEEEEeeeeeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHH--HHHHH
Q 022234 200 G-FEVVRLNTYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTA--SAAKR 269 (300)
Q Consensus 200 G-~~v~~~~vY~~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta--~~l~~ 269 (300)
| +.+.. .+|. ........+..+. + .++|+|+..+-..+...++.+.+.+. .++.+++++-... ..+..
T Consensus 172 g~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vp~di~vig~D~~~~~~~~~~~ 249 (305)
T cd06324 172 PDVRLRQ-VVYA-GWSEDEAYEQAENLLKRYPDVRLIWAANDQMAFGALRAAKEAGRKPGRDVLFGGVNWSPEALRAIKD 249 (305)
T ss_pred CCceEee-eecC-CCCHHHHHHHHHHHHHHCCCccEEEECCchHHHHHHHHHHHcCCCcCCCEEEEecCCCHHHHHHHHc
Confidence 6 32211 1221 1111111111111 2 35899988887777777777766552 3677777754432 44444
Q ss_pred cCCCe
Q 022234 270 LGLKN 274 (300)
Q Consensus 270 ~G~~~ 274 (300)
-.+..
T Consensus 250 ~~ltt 254 (305)
T cd06324 250 GRLSV 254 (305)
T ss_pred CceEE
Confidence 33443
No 110
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=90.02 E-value=4.6 Score=35.19 Aligned_cols=141 Identities=19% Similarity=0.299 Sum_probs=94.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhh--cCCccEE-----EEeChHHHHHHHHHHHHcCC---CCceEEEE
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--DTIFDWI-----IITSPEAGSVFLEAWKEAGT---PNVRIGVV 133 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~--~~~~d~i-----vFTS~~av~~~~~~l~~~~~---~~~~i~aV 133 (300)
.--..|..+|++=+.+..+.+.|..+.+.+.+..+ ...|+-| +.-|.+--..+.+.+++.-+ .+-.++-+
T Consensus 64 ~aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~ppl~k~e~~vlm 143 (265)
T COG4822 64 QALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQIPPLNKDEILVLM 143 (265)
T ss_pred HHHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhcCCcCcCeEEEEE
Confidence 34567889999888888888877766665543332 2334443 45677888888888876543 35566677
Q ss_pred ccchHH-----------HHHHHhhccCCCccccccCC---CCcHHHHHHhcccCCCCC---CEEEEEcCCCChhHHH---
Q 022234 134 GAGTAS-----------IFEEVIQSSKCSLDVAFSPS---KATGKILASELPKNGKKK---CTVLYPASAKASNEIE--- 193 (300)
Q Consensus 134 G~~Ta~-----------~L~~~~~~~~~G~~~~~~p~---~~~~e~L~~~L~~~~~~~---~~vL~~rg~~~~~~L~--- 193 (300)
|.+|.. .+.++ |+.+.++.. -+..+.+++.|.++..++ -+++++.|+.+..++.
T Consensus 144 gHGt~h~s~~~YacLd~~~~~~------~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasdd 217 (265)
T COG4822 144 GHGTDHHSNAAYACLDHVLDEY------GFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDD 217 (265)
T ss_pred ecCCCccHHHHHHHHHHHHHhc------CCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccc
Confidence 877754 45555 775555432 345789999998765322 2568889998766655
Q ss_pred -----HHHHhCCCeeEEEEeeeeee
Q 022234 194 -----EGLSNRGFEVVRLNTYTTEP 213 (300)
Q Consensus 194 -----~~L~~~G~~v~~~~vY~~~~ 213 (300)
+.|+++|+.| .+|..-.
T Consensus 218 edswk~il~~~G~~v---~~~l~GL 239 (265)
T COG4822 218 EDSWKNILEKNGFKV---EVYLHGL 239 (265)
T ss_pred hHHHHHHHHhCCcee---EEEeecC
Confidence 7899999877 6666543
No 111
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=89.93 E-value=2.7 Score=37.60 Aligned_cols=179 Identities=13% Similarity=0.058 Sum_probs=94.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccch
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
..+.+.++++|+++....... +.+...+.+ ....+|+||+++.. .+....+.+.+ .+.++++++...
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~---~~ipvV~~~~~~ 90 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANG-----DPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAAD---AGIPVIAYDRLI 90 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCC-----CHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHH---CCCCEEEECCCC
Confidence 355667888899988765421 222111222 24679999998643 33444444443 367899988653
Q ss_pred HHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccC----CCCCCEEEEEcCCCCh-------hHHHHHHHhCC----C
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN----GKKKCTVLYPASAKAS-------NEIEEGLSNRG----F 201 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~----~~~~~~vL~~rg~~~~-------~~L~~~L~~~G----~ 201 (300)
.. . +....+..+.+ .+..+.+.|.+. ..+.++++++.|.... .-+.+.|++.| +
T Consensus 91 ~~----~------~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~l~~~~~~~~~ 160 (288)
T cd01538 91 LN----S------NVDYYVSFDNEKVGELQGQALVDGLGAKGKPPGNIELIAGSPTDNNAKLFFNGAMSVLKPLIDSGKI 160 (288)
T ss_pred CC----C------CcceEEEeChHHHHHHHHHHHHHHHhhcCCCCceEEEEECCCCCchHHHHHHHHHHHHHhccccCCe
Confidence 11 1 11111112211 233344444433 1234689988665432 23356677766 3
Q ss_pred eeEEEEeeeeeeCCCCcH-------HHHHHcC-CCCEEEEEChHHHHHHHHHhcccCCC-CceEEEeCHHH
Q 022234 202 EVVRLNTYTTEPVHHVDQ-------TVLKQAL-SIPVVAVASPSAVRSWVNLISDTEQW-SNSVACIGETT 263 (300)
Q Consensus 202 ~v~~~~vY~~~~~~~~~~-------~~~~~l~-~~d~IvftS~s~v~~~~~~~~~~~~~-~~~vv~IG~~T 263 (300)
.+.. ..|. ...... ++++... ++++|+..+-..+...+..+.+.+.. ++.+++.+...
T Consensus 161 ~~~~-~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~I~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~~~ 227 (288)
T cd01538 161 TIVG-EVAT---PDWDPETAQKRMENALTANYNKVDGVLAANDGTAGGAIAALKAAGLAGKPPVTGQDAEL 227 (288)
T ss_pred eEEe-cccc---CCCCHHHHHHHHHHHHHhCCCCccEEEeCCcHHHHHHHHHHHHcCCCCCceEEecCCCH
Confidence 3211 1111 111111 1222223 57999999988888888888776532 67888887754
No 112
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=89.83 E-value=8.9 Score=34.94 Aligned_cols=177 Identities=8% Similarity=0.009 Sum_probs=93.0
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|++++..+.- .+.+...+. +....+|+||+.+...-....+.+.+ .+.+++.++....
T Consensus 84 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 153 (331)
T PRK14987 84 GIESVTDAHGYQTMLAHYG-----YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEV---AGIPVVELMDSQS-- 153 (331)
T ss_pred HHHHHHHHCCCEEEEecCC-----CCHHHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHh---CCCCEEEEecCCC--
Confidence 4556677789887765431 121111112 23467999999753322222233333 3577887753210
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 213 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~ 213 (300)
. +....+..+.+. +...++.|.+. +.+++.++.+... ..-+.+.|.++|.....+ ++....
T Consensus 154 ---~------~~~~~V~~Dn~~~~~~a~~~L~~~--Gh~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~ 221 (331)
T PRK14987 154 ---P------CLDIAVGFDNFEAARQMTTAIIAR--GHRHIAYLGARLDERTIIKQKGYEQAMLDAGLVPYSV-MVEQSS 221 (331)
T ss_pred ---C------CCCceEEeCcHHHHHHHHHHHHHC--CCceEEEEcCCCcccHHHHHHHHHHHHHHcCCCccce-eecCCC
Confidence 1 111112233332 34455566554 3468999866532 234567788888643222 222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 214 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 214 ~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
......+..+. + .++++|+.++-..+-..+..+.+.+. .++.+++++..
T Consensus 222 ~~~~~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al~~~g~~vP~disvigfD~~ 277 (331)
T PRK14987 222 SYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHGH 277 (331)
T ss_pred ChhhHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCccEEEeeCCc
Confidence 11111112222 2 35799999998888878777776653 47888998764
No 113
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=89.47 E-value=9.9 Score=34.46 Aligned_cols=188 Identities=12% Similarity=0.083 Sum_probs=85.2
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeC-CCchhHHHhh---hcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccc-
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQG-PDTDRLSSVL---NDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG- 136 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~-~~~~~l~~~l---~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~- 136 (300)
.+-+.+.|++.|+.. .--.++.... .|.+.+.+.+ ...++|.|+-+...+...+.+... ++++++..|-.
T Consensus 17 ~~gf~~~L~~~g~~~-~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa~~~~~~~~----~~iPVVf~~V~d 91 (294)
T PF04392_consen 17 VRGFKDGLKELGYDE-KNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAAQALAKHLK----DDIPVVFCGVSD 91 (294)
T ss_dssp HHHHHHHHHHTT--C-CCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHHHHHHHH-S----S-S-EEEECES-
T ss_pred HHHHHHHHHHcCCcc-ccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHhcC----CCcEEEEEeccC
Confidence 456788899999887 2222233332 3444444444 356899999888888887776543 22777776651
Q ss_pred --hHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEc-CCCC-----hhHHHHHHHhCCCeeEEEEe
Q 022234 137 --TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA-SAKA-----SNEIEEGLSNRGFEVVRLNT 208 (300)
Q Consensus 137 --Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~r-g~~~-----~~~L~~~L~~~G~~v~~~~v 208 (300)
........ ..+|-++.-+-.....+.-++.+.+....-+++.++- .... ...+.+..++.|+++..+.+
T Consensus 92 p~~~~l~~~~---~~~~~nvTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v 168 (294)
T PF04392_consen 92 PVGAGLVDSL---DRPGKNVTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPV 168 (294)
T ss_dssp TTTTTS-S-S---SS--SSEEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred hhhhhccccc---cCCCCCEEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEec
Confidence 11111111 0001111111122234444555555444447874443 3322 34666677788988766554
Q ss_pred eeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHHhccc-CCCCceEEEeCH
Q 022234 209 YTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDT-EQWSNSVACIGE 261 (300)
Q Consensus 209 Y~~~~~~~~~~~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~-~~~~~~vv~IG~ 261 (300)
-.. .......+.+ .+.|++++.....+..-...+... ...++++++..+
T Consensus 169 ~~~----~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 169 PSS----EDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp SSG----GGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESSH
T ss_pred CcH----hHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECCH
Confidence 221 1222334444 578988887766655433222211 123667777654
No 114
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=89.40 E-value=3.5 Score=32.38 Aligned_cols=96 Identities=18% Similarity=0.283 Sum_probs=57.0
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHHHHhcccCCCCceEEEeC-
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWVNLISDTEQWSNSVACIG- 260 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-----s~v~~~~~~~~~~~~~~~~vv~IG- 260 (300)
...+...|+..|++|..+-.. .+. +++.+.. .++|+|++.+. ..++.+++.+++....++++++-|
T Consensus 16 ~~~~~~~l~~~G~~vi~lG~~--vp~----e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 16 AKVIARALRDAGFEVIYTGLR--QTP----EEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHHHHHCCCEEEECCCC--CCH----HHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 455666788999887555443 122 2233322 47788777754 334555555655433456666654
Q ss_pred --HHHHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 022234 261 --ETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 261 --~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~ 291 (300)
+.-.+.+.++|+.-. +....+.+.++..|.
T Consensus 90 ~~~~~~~~~~~~G~d~~-~~~~~~~~~~~~~~~ 121 (122)
T cd02071 90 IPPEDYELLKEMGVAEI-FGPGTSIEEIIDKIR 121 (122)
T ss_pred CCHHHHHHHHHCCCCEE-ECCCCCHHHHHHHHh
Confidence 223445678999874 566668888877664
No 115
>PRK09701 D-allose transporter subunit; Provisional
Probab=89.22 E-value=4.1 Score=37.10 Aligned_cols=183 Identities=9% Similarity=0.024 Sum_probs=95.0
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCch----hHHHhhhcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~----~l~~~l~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
..+.+.++++|+++..+..-. ..+.+ .++.. ....+|.||+..... .......+.+ .+++++++|..
T Consensus 44 ~gi~~~a~~~g~~v~~~~~~~---~~~~~~~~~~i~~l-~~~~vDgiIi~~~~~~~~~~~l~~~~~---~giPvV~~~~~ 116 (311)
T PRK09701 44 KGIEDEAKTLGVSVDIFASPS---EGDFQSQLQLFEDL-SNKNYKGIAFAPLSSVNLVMPVARAWK---KGIYLVNLDEK 116 (311)
T ss_pred HHHHHHHHHcCCeEEEecCCC---CCCHHHHHHHHHHH-HHcCCCEEEEeCCChHHHHHHHHHHHH---CCCcEEEeCCC
Confidence 344566778898887653211 11221 12222 245799999976432 2122222332 36889999865
Q ss_pred hHH-HHHHHhhccCCCcccccc-CCCC-cHHHHHHhcccC-CCCCCEEEEEcCCCC-------hhHHHHHHHhCC-CeeE
Q 022234 137 TAS-IFEEVIQSSKCSLDVAFS-PSKA-TGKILASELPKN-GKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVV 204 (300)
Q Consensus 137 Ta~-~L~~~~~~~~~G~~~~~~-p~~~-~~e~L~~~L~~~-~~~~~~vL~~rg~~~-------~~~L~~~L~~~G-~~v~ 204 (300)
... .+... .+....++ ...+ .+...++.|.+. ...+++++++.|... ..-+.+.|+++| +.+.
T Consensus 117 ~~~~~~~~~-----~~~~~~~V~~d~~~~g~~aa~~L~~~~g~~~~~i~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~~ 191 (311)
T PRK09701 117 IDMDNLKKA-----GGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLV 191 (311)
T ss_pred CCccccccc-----CCceEEEeccchHHHHHHHHHHHHHHhCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 321 11000 01111112 2222 244555555443 222468998876543 234567787776 5432
Q ss_pred EEEeeeeeeCCCCc---HH----HHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHH
Q 022234 205 RLNTYTTEPVHHVD---QT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 262 (300)
Q Consensus 205 ~~~vY~~~~~~~~~---~~----~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~ 262 (300)
. .+. ..... .+ +++.-.++|+|++.+-..+...++.+.+.+. .++.+++++..
T Consensus 192 ~--~~~---~~~~~~~~~~~~~~ll~~~~~~~~I~~~~d~~A~g~~~al~~~G~~~dv~vvg~d~~ 252 (311)
T PRK09701 192 A--SQP---ADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGI 252 (311)
T ss_pred E--ecC---CCCCHHHHHHHHHHHHHhCCCCCEEEECCcchHHHHHHHHHHcCCCCCEEEEEeCCC
Confidence 1 111 11111 11 2221236899999999888888888776553 46788888765
No 116
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=89.13 E-value=5.4 Score=35.20 Aligned_cols=187 Identities=12% Similarity=0.104 Sum_probs=94.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEccchHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~av~~-~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
.+.+.++++|++++.+..-. .++.+...+.+ .....|.||+++...-.. ....+.+ .++++++++.....
T Consensus 20 gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~---~giPvV~~~~~~~~ 93 (268)
T cd06306 20 GMVEEAKRLGVSLKLLEAGG---YPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVA---ASIPVIALVNDINS 93 (268)
T ss_pred HHHHHHHHcCCEEEEecCCC---CCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHH---CCCCEEEeccCCCC
Confidence 44567788898877654311 11111111122 246899999986542111 2333333 46788888753311
Q ss_pred HHHHHhhccCCCccccccCCCCc-HHHHHHhcccCCC---CCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEe
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGK---KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNT 208 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~---~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~v 208 (300)
. +....+..+.+. +..+++.|.+... ..++++++.|.... .-+.+.|++.|+++... .
T Consensus 94 ----~------~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~~i~~l~g~~~~~~~~~R~~g~~~~~~~~~~~~~~~-~ 162 (268)
T cd06306 94 ----P------DITAKVGVSWYEMGYQAGEYLAQRHPKGSKPAKVAWFPGPKGAGWVKAVEKGFRDALAGSAIEISAI-K 162 (268)
T ss_pred ----c------ceeEEecCChHHHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCchHHHHHHHHHHHHhhcCcEEeee-c
Confidence 2 221112222222 3444555554321 12699999875442 23566777777665431 1
Q ss_pred eeeeeCCCCcHH----HHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEe--CHHHHHHHHH
Q 022234 209 YTTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACI--GETTASAAKR 269 (300)
Q Consensus 209 Y~~~~~~~~~~~----~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~I--G~~Ta~~l~~ 269 (300)
+. ........+ +++.-.++|+|+.+ ...+...+..+.+.+. .++.+++. .|...+.+++
T Consensus 163 ~~-~~~~~~~~~~~~~~l~~~~~~~~i~~~-d~~a~~~~~~l~~~g~p~di~vig~~~~p~~~~~l~~ 228 (268)
T cd06306 163 YG-DTGKEVQRKLVEEALEAHPDIDYIVGS-AVAAEAAVGILRQRGLTDQIKIVSTYLSHAVYRGLKR 228 (268)
T ss_pred cC-CccHHHHHHHHHHHHHhCCCcCEEeec-chhhhHHHHHHHhcCCCCCeEEEecCCCHHHHHHHHc
Confidence 11 111111111 12212357888765 5666666666665543 35666664 5667778865
No 117
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=89.08 E-value=4 Score=31.64 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=55.4
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh-----HHHHHHHHHHHHcCCCCceEEEEccc
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP-----EAGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~-----~av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
..-++..|+..|++|+.+... .+ .+++.+.+...++|.|.+++. ..+..+.+.+++...+++++++-|..
T Consensus 16 ~~~~~~~l~~~G~~V~~lg~~----~~-~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVD----VP-PEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCC----CC-HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCC
Confidence 345678899999999776621 11 234544555678999998875 34455556666664447888988887
Q ss_pred hHH---HHHHHhhccCCCccccc
Q 022234 137 TAS---IFEEVIQSSKCSLDVAF 156 (300)
Q Consensus 137 Ta~---~L~~~~~~~~~G~~~~~ 156 (300)
... .+++. |++-.+
T Consensus 91 ~~~~~~~~~~~------G~D~~~ 107 (119)
T cd02067 91 VTRDFKFLKEI------GVDAYF 107 (119)
T ss_pred CChhHHHHHHc------CCeEEE
Confidence 655 56666 876533
No 118
>PRK06756 flavodoxin; Provisional
Probab=88.83 E-value=5.2 Score=32.29 Aligned_cols=89 Identities=8% Similarity=0.061 Sum_probs=50.5
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChH--------HHHHHHHHhcccCCCCceEEEeCH
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS--------AVRSWVNLISDTEQWSNSVACIGE 261 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s--------~v~~~~~~~~~~~~~~~~vv~IG~ 261 (300)
+.+.+.|++.|..+....+.+. +. . ..+.+.|.|+|-||. .+..|++.+....+.+.+++++|.
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~---~~-~----~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt 91 (148)
T PRK06756 20 DHIAGVIRETENEIEVIDIMDS---PE-A----SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGS 91 (148)
T ss_pred HHHHHHHhhcCCeEEEeehhcc---CC-H----HHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeC
Confidence 3556667777776654444332 11 1 124578888888755 366676665443344566666655
Q ss_pred -------------HHHHHHHHcCCCe----EEecCCCCHHHH
Q 022234 262 -------------TTASAAKRLGLKN----VYYPTHPGLEGW 286 (300)
Q Consensus 262 -------------~Ta~~l~~~G~~~----~~v~~~p~~~~l 286 (300)
...+.+++.|++. +.+.-.|+.+++
T Consensus 92 ~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d~ 133 (148)
T PRK06756 92 CDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELTPEDEDV 133 (148)
T ss_pred CCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecCCCHHHH
Confidence 2334566678764 234556776553
No 119
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=88.44 E-value=5.2 Score=31.37 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=62.7
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-----HHHHHHHHHHHcCCCCceEEEEccc
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-----av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
..-....|+..|++++.+.... | .+++.+.....+.|.|++++.. .++.+.+.+++.+.+++++++-|..
T Consensus 16 ~~~~~~~l~~~G~~vi~lG~~v--p---~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~ 90 (122)
T cd02071 16 AKVIARALRDAGFEVIYTGLRQ--T---PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGII 90 (122)
T ss_pred HHHHHHHHHHCCCEEEECCCCC--C---HHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3456678899999999887642 1 1333333445688888887643 3566666777776668888888765
Q ss_pred hHHH---HHHHhhccCCCccccccCCCCcHHHHHHhc
Q 022234 137 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASEL 170 (300)
Q Consensus 137 Ta~~---L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 170 (300)
..+. ++++ |++..+.| ..+.+..+..|
T Consensus 91 ~~~~~~~~~~~------G~d~~~~~-~~~~~~~~~~~ 120 (122)
T cd02071 91 PPEDYELLKEM------GVAEIFGP-GTSIEEIIDKI 120 (122)
T ss_pred CHHHHHHHHHC------CCCEEECC-CCCHHHHHHHH
Confidence 5543 4566 88865544 44566666555
No 120
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.30 E-value=13 Score=33.96 Aligned_cols=210 Identities=15% Similarity=0.139 Sum_probs=112.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEE--eeeeEeee-CCCc-hhHHHhhhcCCccEEEEeChH--------HH---
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLE--LPLIQHAQ-GPDT-DRLSSVLNDTIFDWIIITSPE--------AG--- 113 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~--~P~i~~~~-~~~~-~~l~~~l~~~~~d~ivFTS~~--------av--- 113 (300)
.|+++.+...+.+.-.+++.|.+.|++|.. +|--.... .-.. +...+ .....|.|++.-+- +.
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~--~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE--ALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHH--HhccCCEEEECCccccCCceeeccccc
Confidence 378999999988889999999999999986 22111100 0000 01111 14678899977332 11
Q ss_pred ------HHHHHHHHHcCCCCceEEEEc---cchHHHHHHHhhccCCCccccccCC---------CCcHHH-HHHhcccC-
Q 022234 114 ------SVFLEAWKEAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPS---------KATGKI-LASELPKN- 173 (300)
Q Consensus 114 ------~~~~~~l~~~~~~~~~i~aVG---~~Ta~~L~~~~~~~~~G~~~~~~p~---------~~~~e~-L~~~L~~~- 173 (300)
..+++.++ +. .++.+| +...+.+++. |+.+.-.+. ..++++ +...+...
T Consensus 79 ~~~~~~~~~l~~l~----~~-~~v~~G~~~~~~~~~~~~~------gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~~ 147 (296)
T PRK08306 79 EKLVLTEELLELTP----EH-CTIFSGIANPYLKELAKET------NRKLVELFERDDVAILNSIPTAEGAIMMAIEHTP 147 (296)
T ss_pred cCCcchHHHHHhcC----CC-CEEEEecCCHHHHHHHHHC------CCeEEEEeccchhhhhccHhHHHHHHHHHHHhCC
Confidence 22233222 22 222234 4445566666 887743321 233444 33333322
Q ss_pred -CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCC-----------CcHHHHHHcCCCCEEEEEChHHH--
Q 022234 174 -GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----------VDQTVLKQALSIPVVAVASPSAV-- 239 (300)
Q Consensus 174 -~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~-----------~~~~~~~~l~~~d~IvftS~s~v-- 239 (300)
...+++++++........+...|+..|++| .+|.+.+... ..+.+.+.+.+.|+|+-|.|..+
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V---~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~ 224 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANV---TVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLT 224 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEE---EEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhh
Confidence 125789999987766677888899999754 4555442110 00122233468899999988642
Q ss_pred HHHHHHhcccCCCCceEEE----eCHHHHHHHHHcCCCeEEec
Q 022234 240 RSWVNLISDTEQWSNSVAC----IGETTASAAKRLGLKNVYYP 278 (300)
Q Consensus 240 ~~~~~~~~~~~~~~~~vv~----IG~~Ta~~l~~~G~~~~~v~ 278 (300)
+..++.+++ +..++= -|.+--+.+++.|.+.+..+
T Consensus 225 ~~~l~~~~~----g~vIIDla~~pggtd~~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 225 KEVLSKMPP----EALIIDLASKPGGTDFEYAEKRGIKALLAP 263 (296)
T ss_pred HHHHHcCCC----CcEEEEEccCCCCcCeeehhhCCeEEEEEC
Confidence 111222222 112211 13333357788898765333
No 121
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=88.28 E-value=19 Score=32.45 Aligned_cols=184 Identities=8% Similarity=0.037 Sum_probs=88.9
Q ss_pred HHHHHHHh--CCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccc
Q 022234 64 KLIKALAK--HRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 64 ~l~~~L~~--~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
.+.+.+++ .|+.+...+.- .+.+...+.+ .....|.||+.... ++....+.+.. .++++++++..
T Consensus 20 gi~~~a~~~~~g~~~~~~~~~-----~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~---~giPvV~~~~~ 91 (303)
T cd01539 20 NLEDIQKENGGKVEFTFYDAK-----NNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQ---KNIPVIFFNRE 91 (303)
T ss_pred HHHHHHHhhCCCeeEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHH---CCCCEEEeCCC
Confidence 45555666 66666655431 1222111222 34689999987433 34444444433 36789999865
Q ss_pred hHHH-HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCC----------CCC-EEEEEcCCCC-------hhHHHHHH
Q 022234 137 TASI-FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGK----------KKC-TVLYPASAKA-------SNEIEEGL 196 (300)
Q Consensus 137 Ta~~-L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~----------~~~-~vL~~rg~~~-------~~~L~~~L 196 (300)
.... .... +....+.+..+ .+..+++.|.+... .++ .++++.|... ..-+.+.|
T Consensus 92 ~~~~~~~~~------~~~~~V~~d~~~~g~~~a~~l~~~~~~~~~~~~~~~~g~~~i~~~~g~~~~~~~~~R~~gf~~~l 165 (303)
T cd01539 92 PEEEDIKSY------DKAYYVGTDAEQSGILQGKLIADYWNANKDALDKNGDGIIQYVMLKGEPGHPDAIARTKYSIETL 165 (303)
T ss_pred Ccccccccc------cccceeeecHHHHHHHHHHHHHHHhhccccccccCCCCceEEEEEEcCCCCchhhhhhhhHHHHH
Confidence 3211 1111 11111222222 23344444433210 011 3566666543 22356678
Q ss_pred HhCCCeeEEEEeeeeeeCCCCcH----HHHHHc-CCCCEEEEEChHHHHHHHHHhcccCC------CCceEEEeCH
Q 022234 197 SNRGFEVVRLNTYTTEPVHHVDQ----TVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQ------WSNSVACIGE 261 (300)
Q Consensus 197 ~~~G~~v~~~~vY~~~~~~~~~~----~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~~~------~~~~vv~IG~ 261 (300)
+++|..+....+........... .++... .++++|+..+...+-..++.+.+.+. .++.+++++-
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p~~~~di~iig~d~ 241 (303)
T cd01539 166 NDAGIKTEELASDTANWDRAQAKDKMDALLLKYGDKIEAVIANNDAMALGAIEALQKYGYNKGDKSKNIPVVGVDA 241 (303)
T ss_pred HhcCCCeEEEEeecCCCCHHHHHHHHHHHHHhcCCCccEEEECCchHHHHHHHHHHHcCCCcCCCCCceEEEccCC
Confidence 88887664443322111111111 122211 24789998888877777776665442 2677888763
No 122
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=88.14 E-value=10 Score=33.21 Aligned_cols=181 Identities=13% Similarity=0.078 Sum_probs=91.1
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
.+.+.+++.|+++....... + ....+..+.+.....|.||+++.+.-..+.+.+.+. .+.+++.++..+.. .
T Consensus 22 gi~~~~~~~gy~~~~~~~~~--~-~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~--~~ipvv~~~~~~~~---~ 93 (260)
T cd06304 22 GLEKAEKELGVEVKYVESVE--D-ADYEPNLRQLAAQGYDLIFGVGFGFMDAVEKVAKEY--PDVKFAIIDGVVDA---P 93 (260)
T ss_pred HHHHHHHhcCceEEEEecCC--H-HHHHHHHHHHHHcCCCEEEECCcchhHHHHHHHHHC--CCCEEEEecCccCC---C
Confidence 44466777898877743321 1 111122122234679999998866333343433321 25688888865421 0
Q ss_pred HhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeeeC-CC
Q 022234 144 VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPV-HH 216 (300)
Q Consensus 144 ~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~-~~ 216 (300)
. .+.. +..+.+.+...+..+.......+++.++.+... ..-+.+.++++|..+....++..... ..
T Consensus 94 ~------~~~~-v~~d~~~~~~~a~~l~~~~~g~~~I~~i~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (260)
T cd06304 94 P------NVAS-YVFREYEGSYLAGVLAALMTKTGKVGFVGGMPIPEVNRFINGFAAGAKSVNPDITVLVIYTGSFFDPA 166 (260)
T ss_pred C------Ceee-eecchHHHHHHHHHHHHHhccCCceEEEeccccHHHHHHHHHHHHHHHHhCCCcEEEEEEecCccCcH
Confidence 2 2221 222222222222233322113468888866432 22455677778866554333322111 11
Q ss_pred CcHHHHHH-c-CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHH
Q 022234 217 VDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 262 (300)
Q Consensus 217 ~~~~~~~~-l-~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~ 262 (300)
...+..+. + ..+|+|+.++-..+...+..+.+.+ +.++.++..
T Consensus 167 ~~~~~~~~~l~~~~~ai~~~~d~~A~gv~~al~~~g---v~vigfD~~ 211 (260)
T cd06304 167 KGKEAALALIDQGADVIFAAAGGTGPGVIQAAKEAG---VYAIGVDSD 211 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCCchHHHHHHHHcC---CEEEeecCc
Confidence 11122222 2 3579998888777777777777653 666666553
No 123
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=87.84 E-value=6.4 Score=34.55 Aligned_cols=182 Identities=12% Similarity=0.128 Sum_probs=90.0
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
..+.+.++++|+++..++.-. .+......+... ....+|+||+.+.. ......+.+.+ .++++++++....
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~~-~~~~~dgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~~-- 91 (277)
T cd06319 19 RGVKSKAKALGYDAVELSAEN-SAKKELENLRTA-IDKGVSGIIISPTNSSAAVTLLKLAAQ---AKIPVVIADIGAE-- 91 (277)
T ss_pred HHHHHHHHhcCCeEEEecCCC-CHHHHHHHHHHH-HhcCCCEEEEcCCchhhhHHHHHHHHH---CCCCEEEEecCCC--
Confidence 344566778898887554311 000001112222 24679999887643 22333343433 3678888875421
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccC----CCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEe
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKN----GKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNT 208 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~----~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~v 208 (300)
.. .....+.++.+. +..+++.|.+. ....+++.++.+... ..-+.+.|+++|..+..+
T Consensus 92 --~~------~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~-- 161 (277)
T cd06319 92 --GG------DYVSYIKSDNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLAGI-- 161 (277)
T ss_pred --CC------ceEEEEeeccHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccCCCccHHHHHHHHHHHHHhcCCceEee--
Confidence 11 111112222222 33344444332 113468888875432 234567888888765422
Q ss_pred eeeeeCC-CCcH----HHHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCH
Q 022234 209 YTTEPVH-HVDQ----TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 261 (300)
Q Consensus 209 Y~~~~~~-~~~~----~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~ 261 (300)
+...... .... ++++...++++|+..+...+...++.+.+.+. .++.+++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~vvg~d~ 220 (277)
T cd06319 162 RQQKDFSYQETFDYTNDLLTANPDIRAIWLQGSDRYQGALDAIATAGKTGKVLLICFDA 220 (277)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCccchHHHHHHHHcCCCCCEEEEEcCC
Confidence 2111111 1111 12221235788888877776667777766553 3577888865
No 124
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=87.02 E-value=17 Score=32.56 Aligned_cols=180 Identities=9% Similarity=-0.038 Sum_probs=90.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCch---hHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~---~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.++++|+++...+. ..+.+ +..+.+....+|+||+.+...-.-...... . ...+++.+|....
T Consensus 55 ~gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~~~~-~--~~~pvv~~~~~~~- 125 (309)
T PRK11041 55 RGIEVTAAEHGYLVLIGDC-----AHQNQQEKTFVNLIITKQIDGMLLLGSRLPFDASKEEQ-R--NLPPMVMANEFAP- 125 (309)
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHH-h--cCCCEEEEccccC-
Confidence 3566677778887765322 11211 111222346799999986432111111111 1 1235777776421
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. ++.. +..+.+ .+...++.|.+. +.+++.++.+... ..-+.+.+++.|..+.....+..
T Consensus 126 ---~~------~~~~-V~~Dn~~~g~~a~~~l~~~--G~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~ 193 (309)
T PRK11041 126 ---EL------ELPT-VHIDNLTAAFEAVNYLHEL--GHKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARG 193 (309)
T ss_pred ---CC------CCCE-EEECcHHHHHHHHHHHHHc--CCceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeC
Confidence 12 3222 222322 234455566554 3468988876543 22345667777765432111111
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 212 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 212 ~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
........+.... + ..+++|+.++...+..++..+.+.+. .++.+++++...
T Consensus 194 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~gv~~al~~~g~~ip~di~vvg~D~~~ 252 (309)
T PRK11041 194 DFTFEAGAKALKQLLDLPQPPTAVFCHSDVMALGALSQAKRMGLRVPQDLSIIGFDDID 252 (309)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEEeCCch
Confidence 1111111122222 2 24789999998888777777776552 367888887653
No 125
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.94 E-value=30 Score=33.22 Aligned_cols=217 Identities=12% Similarity=0.083 Sum_probs=109.5
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeee-------------eEeeeCC--CchhHHHhhhcCCccEEEEeChHHHHH
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQGP--DTDRLSSVLNDTIFDWIIITSPEAGSV 115 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~-------------i~~~~~~--~~~~l~~~l~~~~~d~ivFTS~~av~~ 115 (300)
|+|+|.....-...+++.|.+.|.+++.+-. +++.... +...+.+ .....+|.++.++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~-~~~~~a~~vi~~~~~~~~n 79 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLRE-AGAEDADLLIAVTDSDETN 79 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHH-cCCCcCCEEEEecCChHHH
Confidence 4677776665667777777777777665421 1111111 1111211 1356899999987764433
Q ss_pred HH--HHHHHcCCCCceEEEE--ccch--HHHH---HHHhhccCCCccccccCCCCcHHHHHHhcccCCC------CCCE-
Q 022234 116 FL--EAWKEAGTPNVRIGVV--GAGT--ASIF---EEVIQSSKCSLDVAFSPSKATGKILASELPKNGK------KKCT- 179 (300)
Q Consensus 116 ~~--~~l~~~~~~~~~i~aV--G~~T--a~~L---~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~------~~~~- 179 (300)
.. ..++... ...++++. .... ...+ ++. |....+.|..-.+..++..+..... .+..
T Consensus 80 ~~~~~~~r~~~-~~~~ii~~~~~~~~~~~~~l~~~~~~------G~~~vi~p~~~~a~~l~~~l~~~~~~~~~~~~~~~~ 152 (453)
T PRK09496 80 MVACQIAKSLF-GAPTTIARVRNPEYAEYDKLFSKEAL------GIDLLISPELLVAREIARLIEYPGALDVEEFADGRV 152 (453)
T ss_pred HHHHHHHHHhc-CCCeEEEEECCccccchhhhhhhhcC------CccEEECHHHHHHHHHHHHhcCCCceEeeeecCCeE
Confidence 32 2223321 33444543 2222 1223 556 8877666776666777766542210 1111
Q ss_pred -EE--EEcCC--CChhHHHHHH---HhCCCeeEEEEeeeeee-CCCCcHHHHHHcCCCC-EEEEEChHHHHHHHHHhccc
Q 022234 180 -VL--YPASA--KASNEIEEGL---SNRGFEVVRLNTYTTEP-VHHVDQTVLKQALSIP-VVAVASPSAVRSWVNLISDT 249 (300)
Q Consensus 180 -vL--~~rg~--~~~~~L~~~L---~~~G~~v~~~~vY~~~~-~~~~~~~~~~~l~~~d-~IvftS~s~v~~~~~~~~~~ 249 (300)
+. .+..+ .....+.+.- ...|+.+. .+++... ....... .+..-| .++...+..++.|...+...
T Consensus 153 ~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi--~i~r~~~~~~p~~~~---~l~~gD~l~v~g~~~~l~~~~~~~~~~ 227 (453)
T PRK09496 153 QLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVV--AIFRGGRLIIPRGDT---VIEAGDEVYFIGAREHIRAVMSEFGRL 227 (453)
T ss_pred EEEEEEeCCCCccCCcCHHHhhhhcCCCceEEE--EEEECCEEEcCCCCc---EecCCCEEEEEeCHHHHHHHHHHhCcc
Confidence 11 11111 1112233221 23455554 4444321 1111111 133445 45667888888888877654
Q ss_pred CCCCceEEEeC-----HHHHHHHHHcCCCeEEecCC
Q 022234 250 EQWSNSVACIG-----ETTASAAKRLGLKNVYYPTH 280 (300)
Q Consensus 250 ~~~~~~vv~IG-----~~Ta~~l~~~G~~~~~v~~~ 280 (300)
.....+++.+| ...++.|.+.|..++++...
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~ 263 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERD 263 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 33345566555 77888888889987666443
No 126
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=86.71 E-value=24 Score=32.00 Aligned_cols=170 Identities=11% Similarity=-0.028 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
.+.+.++++|+.++.+. .. +.+ ......|.+|+++...- ...+.+.+. +.+++.++.... .
T Consensus 88 ~i~~~~~~~g~~~~~~~----~~--~~~-----~~~~~vDgiI~~~~~~~-~~~~~l~~~---~~pvV~~~~~~~----~ 148 (327)
T PRK10339 88 GIETQCEKLGIELTNCY----EH--SGL-----PDIKNVTGILIVGKPTP-ALRAAASAL---TDNICFIDFHEP----G 148 (327)
T ss_pred HHHHHHHHCCCEEEEee----cc--ccc-----cccccCCEEEEeCCCCH-HHHHHHHhc---CCCEEEEeCCCC----C
Confidence 34456778898876431 11 111 12467999999875322 223334332 467888876421 1
Q ss_pred HhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeCC
Q 022234 144 VIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 215 (300)
Q Consensus 144 ~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~ 215 (300)
. ++.. +..+.+ .+..+++.|.+. +.+++.|+.+... ..-+.+.++..|. +....+|......
T Consensus 149 ~------~~~~-V~~D~~~~~~~a~~~l~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~-~~~~~~~~~~~~~ 218 (327)
T PRK10339 149 S------GYDA-VDIDLARISKEIIDFYINQ--GVNRIGFIGGEDEPGKADIREVAFAEYGRLKQV-VREEDIWRGGFSS 218 (327)
T ss_pred C------CCCE-EEECHHHHHHHHHHHHHHC--CCCeEEEeCCccccchhhHHHHHHHHHHHHcCC-CChhheeecCcCh
Confidence 2 3322 223322 234556666654 3468999976532 1123445666775 2221233221111
Q ss_pred CCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 216 HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 216 ~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
....+..+. + ..+++|++++-..+..++..+.+.+. .++.+++++..
T Consensus 219 ~~~~~~~~~~l~~~~~~~ai~~~~D~~A~g~~~al~~~g~~vP~di~vigfD~~ 272 (327)
T PRK10339 219 SSGYELAKQMLAREDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDI 272 (327)
T ss_pred hHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeCCh
Confidence 111122222 2 24789999998888888888877652 47888888764
No 127
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=86.58 E-value=36 Score=33.87 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCCh
Q 022234 110 PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS 189 (300)
Q Consensus 110 ~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~ 189 (300)
..+++...+.+... +..++.-.-.|++.+++++ .+++..+ ..++-+++..|......++++.++.....-
T Consensus 40 ~~~~~~a~~~~~~~---~~dviIsrG~ta~~i~~~~-----~iPVv~i--~~s~~Dil~al~~a~~~~~~ia~vg~~~~~ 109 (526)
T TIGR02329 40 EDAVREIRQRLGAE---RCDVVVAGGSNGAYLKSRL-----SLPVIVI--KPTGFDVMQALARARRIASSIGVVTHQDTP 109 (526)
T ss_pred HHHHHHHHHHHHhC---CCcEEEECchHHHHHHHhC-----CCCEEEe--cCChhhHHHHHHHHHhcCCcEEEEecCccc
Confidence 33555543433332 3445555555899999884 6665444 344555666664332233455555443321
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHH
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAK 268 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~ 268 (300)
.. ...+.+.+ .+++.+.+.|...++..+..+.+. +..++.=|..|.+.++
T Consensus 110 ~~--------------------------~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~---G~~~viG~~~~~~~A~ 160 (526)
T TIGR02329 110 PA--------------------------LRRFQAAFNLDIVQRSYVTEEDARSCVNDLRAR---GIGAVVGAGLITDLAE 160 (526)
T ss_pred HH--------------------------HHHHHHHhCCceEEEEecCHHHHHHHHHHHHHC---CCCEEECChHHHHHHH
Confidence 11 11122223 267788889999999888888764 5677666778899999
Q ss_pred HcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 269 RLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 269 ~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
++|++.+.+-+ .+++.+++.+.+.
T Consensus 161 ~~gl~~ili~s---~esi~~a~~~A~~ 184 (526)
T TIGR02329 161 QAGLHGVFLYS---ADSVRQAFDDALD 184 (526)
T ss_pred HcCCceEEEec---HHHHHHHHHHHHH
Confidence 99999876643 4888888887664
No 128
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.32 E-value=22 Score=31.13 Aligned_cols=157 Identities=10% Similarity=0.054 Sum_probs=81.3
Q ss_pred cCCccEEEEeCh--HHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCc-cccccCCCCc-HHHHHHhcccCC
Q 022234 99 DTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSL-DVAFSPSKAT-GKILASELPKNG 174 (300)
Q Consensus 99 ~~~~d~ivFTS~--~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~-~~~~~p~~~~-~e~L~~~L~~~~ 174 (300)
....|.||+.+. .++....+.+.+ .+++++.++..... . +. ...+.+..+. +...++.|.+..
T Consensus 58 ~~~vDgiii~~~~~~~~~~~i~~~~~---~gIpvV~~d~~~~~----~------~~~~~~V~~d~~~~g~~aa~~l~~~~ 124 (274)
T cd06311 58 NRKIDALVILPFESAPLTQPVAKAKK---AGIFVVVVDRGLSS----P------GAQDLYVAGDNYGMGRVAGEYIATKL 124 (274)
T ss_pred HcCCCEEEEeCCCchhhHHHHHHHHH---CCCeEEEEcCCCCC----C------cccceEEcCCcHHHHHHHHHHHHHHh
Confidence 457899999864 333333344433 46889888753211 1 11 1112233222 334445555543
Q ss_pred CCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHH----HHHHcCCCCEEEEEChHHHHHHHH
Q 022234 175 KKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVN 244 (300)
Q Consensus 175 ~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~----~~~~l~~~d~IvftS~s~v~~~~~ 244 (300)
...++++++.|... ..-+.+.|++.|.++.. .+..........+ +++...++++|++.+-..+...++
T Consensus 125 ~g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 202 (274)
T cd06311 125 GGNGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKILD--RQYANWNRDDAFSVMQDLLTKFPKIDAVWAHDDDMAVGVLA 202 (274)
T ss_pred CCCCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEEe--ccCCCCcHHHHHHHHHHHHHhCCCcCEEEECCCcHHHHHHH
Confidence 23468998876532 23456677777754432 2111111011111 222123588999988888777777
Q ss_pred HhcccCCC-CceEEEe--CHHHHHHHHHcC
Q 022234 245 LISDTEQW-SNSVACI--GETTASAAKRLG 271 (300)
Q Consensus 245 ~~~~~~~~-~~~vv~I--G~~Ta~~l~~~G 271 (300)
.+.+.+.. ++.+++. .+.+.+.+++ |
T Consensus 203 al~~~g~~~~~~ivg~d~~~~~~~~i~~-g 231 (274)
T cd06311 203 AIKQAGRTDIKFVVGGAGSKDMIKMIMD-G 231 (274)
T ss_pred HHHHcCCCCCceEEEeCCCHHHHHHHHC-C
Confidence 77765533 4566653 3444455543 5
No 129
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=85.92 E-value=14 Score=33.11 Aligned_cols=188 Identities=11% Similarity=0.039 Sum_probs=89.6
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccchHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIF 141 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 141 (300)
.+.+.++++|++++....-.........+..+.+....+|.||+.+.. ++......+ . .+++++.++......
T Consensus 20 gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~-~---~~iPvV~~~~~~~~~- 94 (295)
T TIGR02955 20 GMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQL-T---KSIPVFALVNQIDSN- 94 (295)
T ss_pred HHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHH-h---cCCCEEEEecCCCcc-
Confidence 344566778988876543110010000111112235689999998643 222222222 1 257888774332111
Q ss_pred HHHhhccCCCccccccCCCC-cHHHHHHhcccCCC---CCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 022234 142 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGK---KKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 142 ~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~---~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
. .+. .+....+ .+..+++.|.+... +.++++++.|... ..-+.+.|++.|+.+..+ .+
T Consensus 95 --~------~~~-~V~~D~~~~g~~~~~~L~~~~~~~~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~- 163 (295)
T TIGR02955 95 --Q------VKG-RVGVDWYQMGYQAGEYLAQRHPKGSGPTTLAWLPGPKNRGGTKPVTQGFRAALEGSDVEISAI-LW- 163 (295)
T ss_pred --c------eeE-EEeecHHHHHHHHHHHHHHhcccCCCCeeEEEEeCCCcCCchhHHHHHHHHHHhcCCcEEEEE-ec-
Confidence 1 111 1112221 23444444544221 1357999877653 234566788888765431 21
Q ss_pred eeeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEE--eCHHHHHHHHHcCC
Q 022234 211 TEPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVAC--IGETTASAAKRLGL 272 (300)
Q Consensus 211 ~~~~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~--IG~~Ta~~l~~~G~ 272 (300)
.....+ ++++...++|+| +.+-..+...++.+...+. .++.+++ .+|.....+++ |.
T Consensus 164 ---~~~~~~~~~~~~~~~L~~~~~~d~i-~~~d~~a~g~l~al~~~g~~~dv~vvg~~~~p~~~~~l~~-g~ 230 (295)
T TIGR02955 164 ---ADNDKELQRNLLQDLLKKHPDIDYL-VGSAVAAEAAISELRSLHMTQQIKLVSTYLSHGVYRGLKR-GK 230 (295)
T ss_pred ---CCCcHHHHHHHHHHHHHhCCCcCEE-EeccHHHHHHHHHHHhhCccCCeEEEEecCCHHHHHHHHc-Cc
Confidence 111111 122212357876 5565556556665554332 3556665 46777777764 55
No 130
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=85.91 E-value=7.4 Score=36.18 Aligned_cols=175 Identities=12% Similarity=0.087 Sum_probs=83.5
Q ss_pred HHHHHHHhCCCCEEE-eeeeEeeeCCCchhHHHhh---hcCCccEEEEeC--hHHHHHHHHHHHHcCCCCceEEEEccch
Q 022234 64 KLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVL---NDTIFDWIIITS--PEAGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~-~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS--~~av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
-+.+..+++|+++.. .|. ..+.+.-.+.+ ....+|.|+++. ++++....+.+.+ .+++++++....
T Consensus 44 Gi~~aa~~~G~~v~~~~~~-----~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~---~gIpVV~~d~~~ 115 (336)
T PRK15408 44 GAKEAGKELGVDVTYDGPT-----EPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQ---RGVKVLTWDSDT 115 (336)
T ss_pred HHHHHHHHhCCEEEEECCC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHH---CCCeEEEeCCCC
Confidence 445667788988764 221 11222111122 246899999974 3344444444443 367888887653
Q ss_pred HHHHHHHhhccCCCccccccC-CC--CcHHHHHHhcccCCC-CCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEE
Q 022234 138 ASIFEEVIQSSKCSLDVAFSP-SK--ATGKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p-~~--~~~e~L~~~L~~~~~-~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~ 206 (300)
... .. ..++. .. ..+..+.+.+.+... .+++++++.|.... +.+.+.+.+.+-.+..+
T Consensus 116 ~~~----------~~-~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv 184 (336)
T PRK15408 116 KPE----------CR-SYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIV 184 (336)
T ss_pred CCc----------cc-eEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEE
Confidence 211 10 01111 11 123333344443332 45689888775431 23444554433233222
Q ss_pred EeeeeeeCCCCcHH-------HHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeC
Q 022234 207 NTYTTEPVHHVDQT-------VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIG 260 (300)
Q Consensus 207 ~vY~~~~~~~~~~~-------~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG 260 (300)
.. .....+..+ +++...++|+|+..+...+....+.+++.+..++.++.++
T Consensus 185 ~~---~~~~~d~~~a~~~~~~lL~~~pdi~aI~~~~~~~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 185 TT---QFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred ee---cCCCCcHHHHHHHHHHHHHHCCCCcEEEECCCccHHHHHHHHHhCCCCCEEEEEeC
Confidence 22 222222211 2222246888888776666555555555443345555553
No 131
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=84.84 E-value=20 Score=32.70 Aligned_cols=138 Identities=11% Similarity=0.017 Sum_probs=75.7
Q ss_pred cCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCC-ccccccCCCCcHHHHHHhcccCCCCC
Q 022234 99 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPKNGKKK 177 (300)
Q Consensus 99 ~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G-~~~~~~p~~~~~e~L~~~L~~~~~~~ 177 (300)
....+.|+-..........+.+.+ .+++++..+... ..+... .+ +.. ..........+++.+.+.. .
T Consensus 65 ~~~V~~iig~~~s~~~~~~~~~~~---~~ip~v~~~~~~-~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~g--~ 132 (341)
T cd06341 65 DDKVVAVVGGSSGAGGSALPYLAG---AGIPVIGGAGTS-AWELTS-----PNSFPF-SGGTPASLTTWGDFAKDQG--G 132 (341)
T ss_pred hcCceEEEecccccchhHHHHHhh---cCCceecCCCCC-chhhcC-----CCeEEe-cCCCcchhHHHHHHHHHcC--C
Confidence 346788877554444333344433 245555554332 222111 01 211 1122234566777776543 4
Q ss_pred CEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-HHHHHHHHhcc
Q 022234 178 CTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-AVRSWVNLISD 248 (300)
Q Consensus 178 ~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s-~v~~~~~~~~~ 248 (300)
+++.++..... ...+.+.++++|+.+.....|... ..+....+.++ .++|+|++.+.. .+-.|++.+.+
T Consensus 133 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~i~~~~pdaV~~~~~~~~a~~~~~~~~~ 210 (341)
T cd06341 133 TRAVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITAT--APDPTPQAQQAAAAGADAIITVLDAAVCASVLKAVRA 210 (341)
T ss_pred cEEEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCC--CCCHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH
Confidence 56666543322 345778899999888776666542 12222233333 479999998877 77788888877
Q ss_pred cC
Q 022234 249 TE 250 (300)
Q Consensus 249 ~~ 250 (300)
.+
T Consensus 211 ~G 212 (341)
T cd06341 211 AG 212 (341)
T ss_pred cC
Confidence 65
No 132
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=84.53 E-value=13 Score=30.33 Aligned_cols=102 Identities=21% Similarity=0.334 Sum_probs=66.0
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHH-----HHHHHhcccCCCCceEEE--
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR-----SWVNLISDTEQWSNSVAC-- 258 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~-----~~~~~~~~~~~~~~~vv~-- 258 (300)
+...+...|+..|++|+.....++ +++...+. ++.|+|...|-++.. .+.+.+.+.+..++.+++
T Consensus 28 gakvia~~l~d~GfeVi~~g~~~t------p~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GG 101 (143)
T COG2185 28 GAKVIARALADAGFEVINLGLFQT------PEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGG 101 (143)
T ss_pred chHHHHHHHHhCCceEEecCCcCC------HHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecC
Confidence 467888999999999976666543 23444433 588999888866543 223344444444555444
Q ss_pred -eCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 259 -IGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 259 -IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
|.+-..+.++++|+.-++-|. -+....++.+.+.+..
T Consensus 102 vip~~d~~~l~~~G~~~if~pg-t~~~~~~~~v~~~l~~ 139 (143)
T COG2185 102 VIPPGDYQELKEMGVDRIFGPG-TPIEEALSDLLTRLGA 139 (143)
T ss_pred ccCchhHHHHHHhCcceeeCCC-CCHHHHHHHHHHHHHh
Confidence 556667779999999877665 4666666666655544
No 133
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.15 E-value=18 Score=31.58 Aligned_cols=175 Identities=11% Similarity=0.045 Sum_probs=92.8
Q ss_pred HHHHHHHHh-CCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHH
Q 022234 63 GKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 141 (300)
Q Consensus 63 ~~l~~~L~~-~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 141 (300)
..+.+.+++ .|+.++..+.- + ....+.+.....|++|+++.+. . ....+.+ .+.+++.+|.....
T Consensus 18 ~gi~~~~~~~~g~~~~~~~~~------~-~~~~~~l~~~~vdGiI~~~~~~-~-~~~~l~~---~~~PvV~~~~~~~~-- 83 (265)
T cd01543 18 RGIARYAREHGPWSIYLEPRG------L-QEPLRWLKDWQGDGIIARIDDP-E-MAEALQK---LGIPVVDVSGSREK-- 83 (265)
T ss_pred HHHHHHHHhcCCeEEEEeccc------c-hhhhhhccccccceEEEECCCH-H-HHHHHhh---CCCCEEEEeCccCC--
Confidence 345566777 67777654321 1 1111223346799999875321 1 2233332 36789999875311
Q ss_pred HHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh------hHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 142 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 142 ~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~------~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
. ++.. +....+ .+..+++.|.+. +.++++++.+.... .-+.+.+++.|..+..+..+.....
T Consensus 84 --~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~ 152 (265)
T cd01543 84 --P------GIPR-VTTDNAAIGRMAAEHFLER--GFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDA 152 (265)
T ss_pred --C------CCCE-EeeCHHHHHHHHHHHHHHC--CCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCcccccc
Confidence 2 2221 222222 234445555544 34789988765442 3456678888866522211111100
Q ss_pred C--CCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 215 H--HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 215 ~--~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
. ....+...+ + .++++|+++|...+..+++.+.+.+. .++.+++.+..
T Consensus 153 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vigfd~~ 209 (265)
T cd01543 153 QSWEEEQEELAQWLQSLPKPVGIFACTDARARQLLEACRRAGIAVPEEVAVLGVDND 209 (265)
T ss_pred ccHHHHHHHHHHHHhcCCCCcEEEecChHHHHHHHHHHHHhCCCCCCceEEEeeCCc
Confidence 0 011111222 2 35799999998888888887776552 47788888854
No 134
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=84.06 E-value=32 Score=31.01 Aligned_cols=172 Identities=11% Similarity=0.076 Sum_probs=94.3
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCch---hHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~---~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.++++|+.++.++.. .+.+ ...+.+.....|++|+.+..... .+.+.+. ..+++.+|...
T Consensus 79 ~~i~~~~~~~gy~~~i~~~~-----~~~~~~~~~~~~l~~~~vdGvIi~~~~~~~--~~~l~~~---~~p~V~i~~~~-- 146 (311)
T TIGR02405 79 SGMLPVFYTAGYDPIIMESQ-----FSPQLTNEHLSVLQKRNVDGVILFGFTGCD--EEILESW---NHKAVVIARDT-- 146 (311)
T ss_pred HHHHHHHHHCCCeEEEecCC-----CChHHHHHHHHHHHhcCCCEEEEeCCCCCC--HHHHHhc---CCCEEEEecCC--
Confidence 35566778889998765431 1212 11222334679999987532111 0122222 35788888531
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCC-C-------hhHHHHHHHhCCCeeEEEEeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~-~-------~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
. ++.. +..+.+ .+..+.+.|.+. +.++|.|+.+.. . ..-+.+.+++.|+... ..+
T Consensus 147 ----~------~~~~-V~~D~~~~~~~a~~~L~~~--Ghr~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi~~~--~~~- 210 (311)
T TIGR02405 147 ----G------GFSS-VCYDDYGAIELLMANLYQQ--GHRHISFLGVDPSDKTTGLMRHNAYLAYCESANLEPI--YQT- 210 (311)
T ss_pred ----C------CccE-EEeCcHHHHHHHHHHHHHc--CCCcEEEEccCcccchhHHHHHHHHHHHHHHcCCCce--eee-
Confidence 1 2221 223332 344556666654 346899997532 1 2346778888887631 111
Q ss_pred eeeCCCCcHHHHHH-c-CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHH
Q 022234 211 TEPVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 262 (300)
Q Consensus 211 ~~~~~~~~~~~~~~-l-~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~ 262 (300)
.........+..+. + .++++|++.+-..+-.++..+.+.+..++.+++++..
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~tAi~~~~D~~A~g~~~~l~~~g~~dvsvvgfd~~ 264 (311)
T TIGR02405 211 GQLSHESGYVLTDKVLKPETTALVCATDTLALGAAKYLQELDRSDVQVSSVGNT 264 (311)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHHHHHHcCCCCeEEEeeCCc
Confidence 11110111112222 2 3589999999999888888887766667888888875
No 135
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=83.65 E-value=13 Score=32.87 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
..+.+.+++.|+++..+... .+......+.. +.....|.||+.+.. ......+.+.+ .++++++++..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~--~~~~~~~~i~~-~~~~~~dgiii~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 88 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVP--DGEKVLSAIDN-LGAQGAKGFVICVPDVKLGPAIVAKAKA---YNMKVVAVDDR 88 (289)
T ss_pred HHHHHHHHHcCCEEEEccCC--CHHHHHHHHHH-HHHcCCCEEEEccCchhhhHHHHHHHHh---CCCeEEEecCC
Confidence 34567788899887754332 11001111222 224679999998754 23444444443 36789988754
No 136
>PLN02928 oxidoreductase family protein
Probab=83.24 E-value=17 Score=34.07 Aligned_cols=138 Identities=12% Similarity=0.092 Sum_probs=71.6
Q ss_pred CCCCCCeEEEeCCCCch--HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKE 122 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~--~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~ 122 (300)
.+...++||++.+.... ..+.+.+++.+. ..+. . .+.+++.+ ...++|.++.... .+ ..+++ .
T Consensus 14 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~-~~~~e~~~--~~~~~d~~i~~~~-~~~~~~l~---~ 79 (347)
T PLN02928 14 SDMRPTRVLFCGPEFPASYSYTREYLQKYPF--IQVD-----A-VAREDVPD--VIANYDICVPKMM-RLDADIIA---R 79 (347)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHhhcCCe--eEec-----C-CCHHHHHH--HhcCCcEEEECCC-CCCHHHHh---c
Confidence 45566779999876432 224566655552 2211 1 12233322 2467887665422 12 12222 1
Q ss_pred cCCCCceEEE-Eccch----HHHHHHHhhccCCCccccccCCC--CcHHHHHHhc--------cc---------------
Q 022234 123 AGTPNVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSK--ATGKILASEL--------PK--------------- 172 (300)
Q Consensus 123 ~~~~~~~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~p~~--~~~e~L~~~L--------~~--------------- 172 (300)
.+++|+++ .|..+ ..++.+. |+.+...|.. .+++..++.- .+
T Consensus 80 --~~~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~ 151 (347)
T PLN02928 80 --ASQMKLIMQFGVGLEGVDVDAATKH------GIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE 151 (347)
T ss_pred --CCCceEEEECCcccCcCcHHHHHhC------CCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc
Confidence 13455443 33333 2466777 8888766642 1223222210 00
Q ss_pred ---CCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEE
Q 022234 173 ---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 205 (300)
Q Consensus 173 ---~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~ 205 (300)
....|+++.+++-..-...+.+.|+..|.+|..
T Consensus 152 ~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~ 187 (347)
T PLN02928 152 PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLA 187 (347)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEE
Confidence 113578999997766666788899999976644
No 137
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=82.05 E-value=24 Score=30.21 Aligned_cols=91 Identities=21% Similarity=0.258 Sum_probs=59.2
Q ss_pred CCeEEEeCCCCch-----HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh-----HHHHHHHHH
Q 022234 50 NPKVVVTRERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP-----EAGSVFLEA 119 (300)
Q Consensus 50 g~~VlitR~~~~~-----~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~-----~av~~~~~~ 119 (300)
+.+|+++-+.++. .-.+..|+..|++|+.+.. .. ..+++.+.+...++|.|.+++. ..++.+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~----~~-p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 156 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGR----DV-PPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEA 156 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCC----CC-CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 5677777666443 3457788999999987762 11 1244555555668888877662 445566666
Q ss_pred HHHcCC-CCceEEEEccchHHHHHHHh
Q 022234 120 WKEAGT-PNVRIGVVGAGTASIFEEVI 145 (300)
Q Consensus 120 l~~~~~-~~~~i~aVG~~Ta~~L~~~~ 145 (300)
+++.+. ++++|++-|......+.+.+
T Consensus 157 lr~~~~~~~~~i~vGG~~~~~~~~~~~ 183 (201)
T cd02070 157 LKEAGLRDKVKVMVGGAPVNQEFADEI 183 (201)
T ss_pred HHHCCCCcCCeEEEECCcCCHHHHHHc
Confidence 666653 47899999977666665553
No 138
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=81.38 E-value=60 Score=32.25 Aligned_cols=143 Identities=22% Similarity=0.174 Sum_probs=82.1
Q ss_pred CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEc-cch
Q 022234 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AGT 137 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~~~i~aVG-~~T 137 (300)
.+..++.+.|++.|+++..++.. ....+++. +..+.+.-|..++..-..+.+.|++. +.+-+...-+| ..|
T Consensus 175 ~D~~EikrlL~~~Gi~vn~v~p~----g~s~~di~---~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~~~T 247 (519)
T PRK02910 175 DDLTELRRLLATLGIDVNVVAPL----GASPADLK---RLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIGVGAT 247 (519)
T ss_pred hHHHHHHHHHHHcCCeEEEEeCC----CCCHHHHH---hcccCcEEEEeCHHHHHHHHHHHHHHhCCcccccccccHHHH
Confidence 45689999999999999876521 11223332 45667777777887667777777653 33333345566 456
Q ss_pred HHHHHHHhhccCCCcccccc---CCCCcH--HH---HHHhcccCCCCCCEEEEEcCCCChhHHHHHHH-hCCCeeEEEEe
Q 022234 138 ASIFEEVIQSSKCSLDVAFS---PSKATG--KI---LASELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNT 208 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~---p~~~~~--e~---L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~-~~G~~v~~~~v 208 (300)
.+.|++.. ..-|...... -..... .. +...+......|+++.+..+..-.-.+...|. +.|.+|..+-+
T Consensus 248 ~~fL~~la--~~~g~~~~~~e~~i~~~~~~~~~l~~~~~~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~gt 325 (519)
T PRK02910 248 ARFIREVA--ELLNLDGADLEAFILDGLSAPSRLPWFSRSVDSTYLTGKRVFVFGDATHAVAAARILSDELGFEVVGAGT 325 (519)
T ss_pred HHHHHHHH--HHhCCChhhhHHHHHHHHhhhhhhhHHHHhhhhHhhcCCEEEEEcCcHHHHHHHHHHHHhcCCeEEEEec
Confidence 66666651 1114432100 000000 00 11111111236789988887766677888888 79999977666
Q ss_pred eee
Q 022234 209 YTT 211 (300)
Q Consensus 209 Y~~ 211 (300)
|..
T Consensus 326 ~~~ 328 (519)
T PRK02910 326 YLR 328 (519)
T ss_pred CCc
Confidence 654
No 139
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.22 E-value=43 Score=32.19 Aligned_cols=173 Identities=12% Similarity=0.014 Sum_probs=93.7
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCC-CEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHH-HHHHHHHHc
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGS-VFLEAWKEA 123 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~-~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~-~~~~~l~~~ 123 (300)
-|...++|+++.+-. +...+.|++.|+ ++...+. .. +.+++.+ ...++|.+++.+..-+. .+++.+
T Consensus 6 ~~~~~~~ili~~~~~--~~~~~~l~~~~~~~v~~~~~----~~-~~~~~~~--~~~~~d~l~~~~~~~~~~~~l~~~--- 73 (409)
T PRK11790 6 LPKDKIKFLLLEGVH--QSAVEVLRAAGYTNIEYHKG----AL-DEEELIE--AIKDAHFIGIRSRTQLTEEVLAAA--- 73 (409)
T ss_pred CCCCCeEEEEECCCC--HHHHHHHHhcCCceEEECCC----CC-CHHHHHH--HcCCCCEEEEeCCCCCCHHHHhhC---
Confidence 455668999997543 556678888886 5544321 11 2233322 35678988776542221 222222
Q ss_pred CCCCceEEE---Eccc--hHHHHHHHhhccCCCccccccCCCCcHHHHHHh--------cc------------c------
Q 022234 124 GTPNVRIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE--------LP------------K------ 172 (300)
Q Consensus 124 ~~~~~~i~a---VG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~--------L~------------~------ 172 (300)
+++++++ +|-. -.+++.+. |+.+...|.. +++..++. .. .
T Consensus 74 --~~Lk~I~~~~~G~d~id~~~~~~~------gI~V~n~pg~-~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~ 144 (409)
T PRK11790 74 --EKLVAIGCFCIGTNQVDLDAAAKR------GIPVFNAPFS-NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAA 144 (409)
T ss_pred --CCCeEEEECceecccccHHHHHhC------CCEEEeCCCC-ChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccccc
Confidence 2455443 3433 22467777 9988776642 33222221 00 0
Q ss_pred --CCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCC--CcHHHHHHcCCCCEEEEEChHHH
Q 022234 173 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSAV 239 (300)
Q Consensus 173 --~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--~~~~~~~~l~~~d~IvftS~s~v 239 (300)
....|+++.+++-..-...+.+.|+..|.+|..+..+....... ....+.+.+...|+|++.-|.+-
T Consensus 145 ~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~ 215 (409)
T PRK11790 145 GSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETP 215 (409)
T ss_pred CcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCCh
Confidence 11357788888766656678889999998775544332111110 01122333467899998887655
No 140
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=80.33 E-value=57 Score=31.36 Aligned_cols=142 Identities=14% Similarity=0.102 Sum_probs=78.7
Q ss_pred chHHHHHHHHhCCCCEEEeeeeE------------eeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHH-cCCCC
Q 022234 61 KNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKE-AGTPN 127 (300)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~i~------------~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~-~~~~~ 127 (300)
+..++.+.|++.|+++..+|.+. ..+... ..+++.-+.++...-+..++..-..+.+.|++ .+.+-
T Consensus 170 d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg-~~~e~i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~ 248 (428)
T cd01965 170 DVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGG-TTLEEIRDAGNAKATIALGEYSGRKAAKALEEKFGVPY 248 (428)
T ss_pred CHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCC-CcHHHHHHhccCcEEEEEChhhhHHHHHHHHHHHCCCe
Confidence 46899999999999999987651 111111 12333324566677777777555555666654 33322
Q ss_pred ceEE-EEc-cchHHHHHHHhhccCCCccccccCCCCc--HHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 022234 128 VRIG-VVG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 201 (300)
Q Consensus 128 ~~i~-aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~ 201 (300)
+..- -+| ..|.+.|++.. ...|... |.... -+.+.+.+.+. ...|+++.+..+....-.|...|.+.|.
T Consensus 249 ~~~~~p~G~~~t~~~l~~l~--~~~g~~~---~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~~~~~l~~~L~e~G~ 323 (428)
T cd01965 249 ILFPTPIGLKATDEFLRALS--KLSGKPI---PEELERERGRLLDAMLDSHFYLGGKRVAIAGDPDLLLGLSRFLLEMGA 323 (428)
T ss_pred eecCCCcChHHHHHHHHHHH--HHHCCCC---CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChHHHHHHHHHHHHcCC
Confidence 2111 355 34556655551 1114332 22111 11122222111 1367899888766666678999999999
Q ss_pred eeEEEEe
Q 022234 202 EVVRLNT 208 (300)
Q Consensus 202 ~v~~~~v 208 (300)
.|..+.+
T Consensus 324 ~v~~v~~ 330 (428)
T cd01965 324 EPVAAVT 330 (428)
T ss_pred cceEEEE
Confidence 9866555
No 141
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=80.08 E-value=1 Score=36.83 Aligned_cols=107 Identities=17% Similarity=0.118 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeee-----CCC--CcHHHHHHcCCCCEEEEEChHHH----HHHHH
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP-----VHH--VDQTVLKQALSIPVVAVASPSAV----RSWVN 244 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~-----~~~--~~~~~~~~l~~~d~IvftS~s~v----~~~~~ 244 (300)
++++|.+++.-.. +.+.|++.+ .++.+++..+ .+. ........+...|+++.|.++-+ +.+++
T Consensus 10 ~~~~V~~VG~f~P---~~~~l~~~~---~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~ 83 (147)
T PF04016_consen 10 PGDKVGMVGYFQP---LVEKLKERG---AEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLVNGTIDDILE 83 (147)
T ss_dssp TTSEEEEES--HC---CHHHHCCCC---SEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCCTTTHHHHHH
T ss_pred CCCEEEEEcCcHH---HHHHHhcCC---CCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeeecCCHHHHHH
Confidence 5789999986433 567787665 4466777665 221 11223334578999999998754 44444
Q ss_pred HhcccCCCCceEEEeCHHHHHHH---HHcCCCeEEecCCCCHHHHHHHHHH
Q 022234 245 LISDTEQWSNSVACIGETTASAA---KRLGLKNVYYPTHPGLEGWVDSILE 292 (300)
Q Consensus 245 ~~~~~~~~~~~vv~IG~~Ta~~l---~~~G~~~~~v~~~p~~~~l~~ai~~ 292 (300)
..+ ....++.+||++.-.- .++|++.+--..--+.+.+++.|.+
T Consensus 84 ~~~----~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 84 LAR----NAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISE 130 (147)
T ss_dssp HTT----TSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCT
T ss_pred hCc----cCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHc
Confidence 443 2467888999886544 4568875432223477888877753
No 142
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=79.43 E-value=27 Score=31.23 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=33.3
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeC--HHHHHHHHHcCCCeEEecCCC
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIG--ETTASAAKRLGLKNVYYPTHP 281 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG--~~Ta~~l~~~G~~~~~v~~~p 281 (300)
.++++|+..+...+...++.+.+.+. .++.++.++ +.+.+.+++ |.-...+...|
T Consensus 184 ~~~~ai~~~~d~~a~ga~~al~~~g~~~~i~vvg~d~~~~~~~~l~~-g~i~~~~~q~p 241 (302)
T TIGR02637 184 PNLKGIIAPTTVGIKAAAQAVSDAKLIGKVKLTGLGLPSEMAKYVKN-GTVKAFALWNP 241 (302)
T ss_pred CCccEEEeCCCchHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHhc-CccceEEEeCH
Confidence 35788888776776666666655432 367788887 555677765 64222334444
No 143
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=79.30 E-value=24 Score=26.42 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=42.5
Q ss_pred EEEEEcCCCCh-----hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCC
Q 022234 179 TVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 253 (300)
Q Consensus 179 ~vL~~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~ 253 (300)
+||+.||.+-. ..+.+.++++|.++. +..+.. .+......++| +++++|.....+-+.-+.....+
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~-v~~~~~-------~~~~~~~~~~D-iil~~Pqv~~~~~~i~~~~~~~~ 71 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAE-IEAVPE-------SELEEYIDDAD-VVLLGPQVRYMLDEVKKKAAEYG 71 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceE-EEEecH-------HHHHHhcCCCC-EEEEChhHHHHHHHHHHHhccCC
Confidence 47888888752 356677888887631 111111 11112235677 66777776665544332222247
Q ss_pred ceEEEeCHH
Q 022234 254 NSVACIGET 262 (300)
Q Consensus 254 ~~vv~IG~~ 262 (300)
.++..|++.
T Consensus 72 ~pv~~I~~~ 80 (96)
T cd05564 72 IPVAVIDMM 80 (96)
T ss_pred CcEEEcChH
Confidence 899999884
No 144
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=78.92 E-value=64 Score=31.14 Aligned_cols=140 Identities=13% Similarity=0.056 Sum_probs=72.3
Q ss_pred hHHHHHHHHhCCCCEEEeeeeE------------eee-CCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHH-cCCCC
Q 022234 62 NGKLIKALAKHRIDCLELPLIQ------------HAQ-GPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKE-AGTPN 127 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~------------~~~-~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~-~~~~~ 127 (300)
..++.+.|++.|+++..+|=+. .-+ ....+++. +.++...-+..++..-..+.+.+++ .+.+-
T Consensus 176 ~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~i~---~~~~A~~niv~~~~~~~~~a~~Le~~~giP~ 252 (435)
T cd01974 176 MREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEELK---DAGNAKATLALQEYATEKTAKFLEKKCKVPV 252 (435)
T ss_pred HHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHHHHH---hhccCcEEEEECccccHHHHHHHHHHhCCCe
Confidence 6899999999999998765211 111 11222222 3445555555555444445555554 33221
Q ss_pred ceE-EEEc-cchHHHHHHHhhccCCCccccccCCCCc--HHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 022234 128 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 201 (300)
Q Consensus 128 ~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~ 201 (300)
... +-+| ..|.+.+++.. .+-|..+ |.... -+.+.+.+.+. ...|+++.+..+..-.-.+.+.|.+.|.
T Consensus 253 ~~~~~p~G~~~t~~~l~~l~--~~~g~~~---~~~i~~er~~~~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~elGm 327 (435)
T cd01974 253 ETLNMPIGVAATDEFLMALS--ELTGKPI---PEELEEERGRLVDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLELGM 327 (435)
T ss_pred eecCCCcChHHHHHHHHHHH--HHhCCCC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHHCCC
Confidence 111 1233 34455555441 1114432 21111 12233344332 1267899887765555667789999999
Q ss_pred eeEEEEee
Q 022234 202 EVVRLNTY 209 (300)
Q Consensus 202 ~v~~~~vY 209 (300)
++..+.++
T Consensus 328 ~v~~~~~~ 335 (435)
T cd01974 328 EPVHVLTG 335 (435)
T ss_pred EEEEEEeC
Confidence 98665553
No 145
>PRK06703 flavodoxin; Provisional
Probab=78.80 E-value=32 Score=27.64 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=43.4
Q ss_pred HHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEECh--------HHHHHHHHHhcccCCCCceEEEeCH-
Q 022234 191 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP--------SAVRSWVNLISDTEQWSNSVACIGE- 261 (300)
Q Consensus 191 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~--------s~v~~~~~~~~~~~~~~~~vv~IG~- 261 (300)
.+.+.|.+.|..|+...+-+ . ... .+.+.|.|+|-|| ..+..|+..+....+++.+++++|-
T Consensus 21 ~ia~~l~~~g~~v~~~~~~~---~--~~~----~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g 91 (151)
T PRK06703 21 LIKVSLDAFDHEVVLQEMDG---M--DAE----ELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSG 91 (151)
T ss_pred HHHHHHHhcCCceEEEehhh---C--CHH----HHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccC
Confidence 44556667776654433311 1 111 2457788888663 3577787776543345566666652
Q ss_pred --------H----HHHHHHHcCCCe
Q 022234 262 --------T----TASAAKRLGLKN 274 (300)
Q Consensus 262 --------~----Ta~~l~~~G~~~ 274 (300)
. ..+.+++.|++.
T Consensus 92 ~~~y~~~~~a~~~l~~~l~~~G~~~ 116 (151)
T PRK06703 92 DTAYPLFCEAVTIFEERLVERGAEL 116 (151)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCEE
Confidence 1 566778888864
No 146
>PRK10537 voltage-gated potassium channel; Provisional
Probab=78.73 E-value=29 Score=33.22 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=66.3
Q ss_pred CEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee----------eeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHH
Q 022234 178 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT----------TEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNL 245 (300)
Q Consensus 178 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~----------~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~ 245 (300)
+++++.+...-...+.+.|.+.|.++.-+.--+ ...-+...++.+++. ++.++++.++++..++..-.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~iv 320 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFVV 320 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHH
Confidence 467777666666667777887776664443110 011111223344443 57888998888777666543
Q ss_pred hcccC-CCCceEE--EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHH
Q 022234 246 ISDTE-QWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 290 (300)
Q Consensus 246 ~~~~~-~~~~~vv--~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai 290 (300)
+.-.. ..+.+++ +-.+.-.+.+++.|...++.|..-.-+.+++.+
T Consensus 321 L~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~l 368 (393)
T PRK10537 321 LAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLARTL 368 (393)
T ss_pred HHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHHHHHHHHHHHHh
Confidence 32211 1344444 568899999999999987665544444444443
No 147
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=78.52 E-value=26 Score=26.30 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=43.9
Q ss_pred CEEEEEcCCCCh-----hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhccc-CC
Q 022234 178 CTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDT-EQ 251 (300)
Q Consensus 178 ~~vL~~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~-~~ 251 (300)
++||+.||.+-. ..+.+.++++|+++. ++.. .. .+..+...++| +++.+|.....+ +.+++. ..
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~---v~a~---~~--~~~~~~~~~~D-vill~pqi~~~~-~~i~~~~~~ 73 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVK---IAAG---SY--GAAGEKLDDAD-VVLLAPQVAYML-PDLKKETDK 73 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEE---EEEe---cH--HHHHhhcCCCC-EEEECchHHHHH-HHHHHHhhh
Confidence 689999998753 356677788887642 2222 11 11222235678 555566555544 334332 22
Q ss_pred CCceEEEeCHHH
Q 022234 252 WSNSVACIGETT 263 (300)
Q Consensus 252 ~~~~vv~IG~~T 263 (300)
.++++..|.+..
T Consensus 74 ~~ipv~~I~~~~ 85 (95)
T TIGR00853 74 KGIPVEVINGAQ 85 (95)
T ss_pred cCCCEEEeChhh
Confidence 367999998854
No 148
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=78.27 E-value=22 Score=26.89 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=53.5
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCCC--hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHH
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAKA--SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAV 239 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~~--~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v 239 (300)
.+.+.++.|.+. |+++.++.-+.. +..+.+.|+..|+.+ + .+ =++||...+
T Consensus 18 ga~e~l~~L~~~---g~~~~~lTNns~~s~~~~~~~L~~~Gi~~-----------~--~~-----------~i~ts~~~~ 70 (101)
T PF13344_consen 18 GAVEALDALRER---GKPVVFLTNNSSRSREEYAKKLKKLGIPV-----------D--ED-----------EIITSGMAA 70 (101)
T ss_dssp THHHHHHHHHHT---TSEEEEEES-SSS-HHHHHHHHHHTTTT---------------GG-----------GEEEHHHHH
T ss_pred CHHHHHHHHHHc---CCCEEEEeCCCCCCHHHHHHHHHhcCcCC-----------C--cC-----------EEEChHHHH
Confidence 355666677664 578888876654 569999999999775 1 11 257888888
Q ss_pred HHHHHHhcccCCCCceEEEeC-HHHHHHHHHcCCC
Q 022234 240 RSWVNLISDTEQWSNSVACIG-ETTASAAKRLGLK 273 (300)
Q Consensus 240 ~~~~~~~~~~~~~~~~vv~IG-~~Ta~~l~~~G~~ 273 (300)
..+++.-. ...+++++| +...+.++++|++
T Consensus 71 ~~~l~~~~----~~~~v~vlG~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 71 AEYLKEHK----GGKKVYVLGSDGLREELREAGFE 101 (101)
T ss_dssp HHHHHHHT----TSSEEEEES-HHHHHHHHHTTEE
T ss_pred HHHHHhcC----CCCEEEEEcCHHHHHHHHHcCCC
Confidence 87777632 245777775 4566777777763
No 149
>PRK06756 flavodoxin; Provisional
Probab=78.03 E-value=9.6 Score=30.70 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH--------HHHHHHHHHHHcCCCCceEEEEc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVVG 134 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~--------av~~~~~~l~~~~~~~~~i~aVG 134 (300)
+.+++.|++.|.++..+++-+.. ... .+.++|.|+|-|+. .+..|++.+......+.+++++|
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~---~~~------~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fg 90 (148)
T PRK06756 20 DHIAGVIRETENEIEVIDIMDSP---EAS------ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFG 90 (148)
T ss_pred HHHHHHHhhcCCeEEEeehhccC---CHH------HHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 44555666678777655543221 111 24579999998755 36666666655555688888887
Q ss_pred cch
Q 022234 135 AGT 137 (300)
Q Consensus 135 ~~T 137 (300)
..+
T Consensus 91 t~~ 93 (148)
T PRK06756 91 SCD 93 (148)
T ss_pred CCC
Confidence 744
No 150
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=77.77 E-value=11 Score=32.06 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCeeEEEEeeeeeeC-----CC---CcHHHHHHcCCCCEEEEECh-------HHHHHHHHHhcc
Q 022234 191 EIEEGLSNRGFEVVRLNTYTTEPV-----HH---VDQTVLKQALSIPVVAVASP-------SAVRSWVNLISD 248 (300)
Q Consensus 191 ~L~~~L~~~G~~v~~~~vY~~~~~-----~~---~~~~~~~~l~~~d~IvftS~-------s~v~~~~~~~~~ 248 (300)
.+.+.|.+.|.+++.+.+|+-... .. ...++.+.+...|.|||.|| ..+++|++.+..
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~~ 94 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLDLLPE 94 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHhCCh
Confidence 455667778888888888753211 00 11223344567899999998 688889987753
No 151
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.73 E-value=21 Score=34.31 Aligned_cols=116 Identities=11% Similarity=0.070 Sum_probs=65.3
Q ss_pred HHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeee--------------eeCCCCcHHHHHHc--CCC
Q 022234 165 ILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT--------------EPVHHVDQTVLKQA--LSI 228 (300)
Q Consensus 165 ~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~--------------~~~~~~~~~~~~~l--~~~ 228 (300)
.+.+.+.+.....++++++++..-...+.+.|.+.|.+|.-+..-.. ..-+....+.+++. .+.
T Consensus 219 ~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 219 AVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred HHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccC
Confidence 34444443333457899998877777899999999988755522110 01111112233332 477
Q ss_pred CEEEEEChHHHHHHHHHh--cccCCCCceEEEeCHHHHHHHHHcCCCeEEecCC
Q 022234 229 PVVAVASPSAVRSWVNLI--SDTEQWSNSVACIGETTASAAKRLGLKNVYYPTH 280 (300)
Q Consensus 229 d~IvftS~s~v~~~~~~~--~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~ 280 (300)
++++.++++.-.+..-.. ++.+...+.+.+-.+.-.+.++..|...++.|..
T Consensus 299 ~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~g~~~vi~p~~ 352 (453)
T PRK09496 299 DAFIALTNDDEANILSSLLAKRLGAKKVIALVNRPAYVDLVEGLGIDIAISPRQ 352 (453)
T ss_pred CEEEECCCCcHHHHHHHHHHHHhCCCeEEEEECCcchHHHHHhcCCCEEECHHH
Confidence 888887765444443322 2222223334455777778888999886554443
No 152
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=77.50 E-value=48 Score=28.91 Aligned_cols=154 Identities=14% Similarity=0.021 Sum_probs=77.2
Q ss_pred cCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCC-CccccccCCCCcHHHHHHhcccCCCCC
Q 022234 99 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKC-SLDVAFSPSKATGKILASELPKNGKKK 177 (300)
Q Consensus 99 ~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~-G~~~~~~p~~~~~e~L~~~L~~~~~~~ 177 (300)
....|.||..+..+..... . ...+++++.+|.......... ..... +..............+++.|.+...+.
T Consensus 58 ~~~vd~iI~~~~~~~~~~~--~---~~~~iPvV~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 131 (281)
T cd06325 58 ADKPDLIVAIATPAAQAAA--N---ATKDIPIVFTAVTDPVGAGLV-KSLEKPGGNVTGVSDLVPVETQLELLKKLLPDA 131 (281)
T ss_pred hcCCCEEEEcCcHHHHHHH--H---cCCCCCEEEEecCCccccccc-cccccCCCceeCeecccchHHHHHHHHHHCCCC
Confidence 4679999987654433221 1 124678888874321110000 00000 111111122223455555665543345
Q ss_pred CEEEEEcCCC------ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHHhcccC
Q 022234 178 CTVLYPASAK------ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTE 250 (300)
Q Consensus 178 ~~vL~~rg~~------~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~~ 250 (300)
+++.++.+.. ....+.+.+++.|..+.....+ ......+..+.+ .+.|+|++.+-..+...+..+.+.+
T Consensus 132 ~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~dai~~~~d~~a~~~~~~~~~~~ 207 (281)
T cd06325 132 KTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVS----SSNDVQQAAQSLAGKVDAIYVPTDNTVASAMEAVVKVA 207 (281)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEecC----CHHHHHHHHHHhcccCCEEEEcCchhHHhHHHHHHHHH
Confidence 7888874432 2356667788888776442111 111111222222 4579998887776666666555443
Q ss_pred C-CCceEEEeCHH
Q 022234 251 Q-WSNSVACIGET 262 (300)
Q Consensus 251 ~-~~~~vv~IG~~ 262 (300)
. .++++++++..
T Consensus 208 ~~~~ipvig~d~~ 220 (281)
T cd06325 208 NEAKIPVIASDDD 220 (281)
T ss_pred HHcCCCEEEcCHH
Confidence 2 46788888765
No 153
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=77.46 E-value=6.8 Score=31.52 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=39.0
Q ss_pred hHHHHHHHhCCCeeEEEEeeeee-e-----------CCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHHHhc
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTE-P-----------VHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLIS 247 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~-~-----------~~~~~~~~~~~l~~~d~IvftS~-------s~v~~~~~~~~ 247 (300)
+.+.+.|++.|++++.+.+.+.. + ..+...++.+.+...|.|||.|| ..+++|++.+.
T Consensus 21 ~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~ 97 (152)
T PF03358_consen 21 EAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLS 97 (152)
T ss_dssp HHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHH
T ss_pred HHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhc
Confidence 35667777778888777776641 1 11111234444568899999996 68899999886
No 154
>PRK08339 short chain dehydrogenase; Provisional
Probab=76.72 E-value=49 Score=29.12 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=48.3
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccE--EE--EeChHHHHHHHHHH
Q 022234 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDW--II--ITSPEAGSVFLEAW 120 (300)
Q Consensus 47 ~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~--iv--FTS~~av~~~~~~l 120 (300)
++.|+++|||.... =...+++.|.++|++|+.+-. .....+.+.+.+ .....+. +. +++..+++.+++..
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSR----NEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 47799999998764 457899999999998765321 101111222222 1112222 21 47888998888877
Q ss_pred HHcCCCCceEEEEc
Q 022234 121 KEAGTPNVRIGVVG 134 (300)
Q Consensus 121 ~~~~~~~~~i~aVG 134 (300)
.+.+.-+.-+.+.|
T Consensus 81 ~~~g~iD~lv~nag 94 (263)
T PRK08339 81 KNIGEPDIFFFSTG 94 (263)
T ss_pred HhhCCCcEEEECCC
Confidence 54332234444444
No 155
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=76.05 E-value=31 Score=32.87 Aligned_cols=203 Identities=13% Similarity=0.049 Sum_probs=101.3
Q ss_pred CeEEEeCC--CCchHHHHHHHHhCCCCEE-EeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCC
Q 022234 51 PKVVVTRE--RGKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTP 126 (300)
Q Consensus 51 ~~VlitR~--~~~~~~l~~~L~~~G~~v~-~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~ 126 (300)
.+|.+... .....++.+.|++.|+++. .+|-. +.+++. ..+....++..++... ...+.+++. +.+
T Consensus 156 ~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d~------~~~~~~---~~~~a~~~~~~~~~~~-~~A~~Le~r~giP 225 (396)
T cd01979 156 RSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPPR------RYTDLP---VIGPGTYVLGIQPFLS-RTATTLMRRRKCK 225 (396)
T ss_pred CceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCCC------ChHHhh---ccCcceEEEEeChhHH-HHHHHHHHhcCCC
Confidence 44444432 2345789999999999996 34421 222222 2334444555555543 345555443 322
Q ss_pred CceE-EEEc-cchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCe
Q 022234 127 NVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFE 202 (300)
Q Consensus 127 ~~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~~ 202 (300)
-... +-+| ..|.+.|++.. .+-|..+.... .....+.+.+... ...|+++.+..+....-.+...|.+.|++
T Consensus 226 ~~~~~~P~G~~~t~~~l~~la--~~~g~~~~~i~--~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~elGm~ 301 (396)
T cd01979 226 LLSAPFPIGPDGTRAWLEAIC--SAFGIFPSVLA--EREARAWRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTRCGMI 301 (396)
T ss_pred cccCCcCcChHHHHHHHHHHH--HHhCCChhHHH--HHHHHHHHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHHCCCE
Confidence 2221 2255 35666666651 11142221111 1112333334332 13688998887766677899999999998
Q ss_pred eEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCe
Q 022234 203 VVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 203 v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
|..+-. .. ......+...+.+. .+..+... .....+.+.+.+. +.-++.-|...+..+.+.|+..
T Consensus 302 vv~~~t-~~-~~~~~~~~~~~~l~-~~~~v~~~-~d~~~l~~~i~~~---~pDlli~~~~~a~pl~r~G~P~ 366 (396)
T cd01979 302 VVEVGT-PY-LDKRFQAAELELLP-PMVRIVEK-PDNYRQLDRIREL---RPDLVVTGLGLANPLEARGITT 366 (396)
T ss_pred EEeeCC-Cc-CChHHHHHHHHhcC-CCCeEEEC-CCHHHHHHHHHhc---CCCEEEecccccCcHHhCCCcc
Confidence 866522 11 11111122223232 34444433 3333344444432 2334444666777899999964
No 156
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=75.71 E-value=14 Score=30.72 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=21.9
Q ss_pred HHHHcCCCCEEEEECh-------HHHHHHHHHhcc
Q 022234 221 VLKQALSIPVVAVASP-------SAVRSWVNLISD 248 (300)
Q Consensus 221 ~~~~l~~~d~IvftS~-------s~v~~~~~~~~~ 248 (300)
+.+.+...|+|||.|| ..+++|++.+..
T Consensus 59 l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~ 93 (171)
T TIGR03567 59 ATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQ 93 (171)
T ss_pred HHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCCh
Confidence 4444568899999998 688999988753
No 157
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=75.44 E-value=22 Score=27.33 Aligned_cols=83 Identities=14% Similarity=0.263 Sum_probs=48.8
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHHHHhcccCCCCceEEEeC
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWVNLISDTEQWSNSVACIG 260 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-----s~v~~~~~~~~~~~~~~~~vv~IG 260 (300)
+...+...|+..|++|..+-. .. ..+++.+.+ .++|+|.+++. ..+..+.+.+++....++++++-|
T Consensus 15 G~~~~~~~l~~~G~~V~~lg~--~~----~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 15 GKNIVARALRDAGFEVIDLGV--DV----PPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred HHHHHHHHHHHCCCEEEECCC--CC----CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 355677889999988843331 11 222333332 47888888764 233444555554422267777777
Q ss_pred HHHHH---HHHHcCCCeEE
Q 022234 261 ETTAS---AAKRLGLKNVY 276 (300)
Q Consensus 261 ~~Ta~---~l~~~G~~~~~ 276 (300)
+.... .+++.|+.-++
T Consensus 89 ~~~~~~~~~~~~~G~D~~~ 107 (119)
T cd02067 89 AIVTRDFKFLKEIGVDAYF 107 (119)
T ss_pred CCCChhHHHHHHcCCeEEE
Confidence 65544 77888986543
No 158
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=75.32 E-value=93 Score=31.13 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=82.2
Q ss_pred CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 022234 127 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 127 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 206 (300)
+..++.-.-.|++.+++++ .+++..+ ..++-++++.|......+.++.++.....-..
T Consensus 64 ~~dviIsrG~ta~~i~~~~-----~iPVv~i--~~s~~Dil~al~~a~~~~~~iavv~~~~~~~~--------------- 121 (538)
T PRK15424 64 RCDAIIAAGSNGAYLKSRL-----SVPVILI--KPSGFDVMQALARARKLTSSIGVVTYQETIPA--------------- 121 (538)
T ss_pred CCcEEEECchHHHHHHhhC-----CCCEEEe--cCCHhHHHHHHHHHHhcCCcEEEEecCcccHH---------------
Confidence 4455655666888888874 6655444 34455566666433222345555444332111
Q ss_pred EeeeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHH
Q 022234 207 NTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 285 (300)
Q Consensus 207 ~vY~~~~~~~~~~~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~ 285 (300)
...+.+.+ -+++.+.+.+...++..+..+++. +..++.=|-.|.+.++++|.+-+++- +.++
T Consensus 122 -----------~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~---G~~~vvG~~~~~~~A~~~g~~g~~~~---s~e~ 184 (538)
T PRK15424 122 -----------LVAFQKTFNLRIEQRSYVTEEDARGQINELKAN---GIEAVVGAGLITDLAEEAGMTGIFIY---SAAT 184 (538)
T ss_pred -----------HHHHHHHhCCceEEEEecCHHHHHHHHHHHHHC---CCCEEEcCchHHHHHHHhCCceEEec---CHHH
Confidence 11122223 266778888888898888887764 56777777788999999999976553 4588
Q ss_pred HHHHHHHHHH
Q 022234 286 WVDSILEALR 295 (300)
Q Consensus 286 l~~ai~~~~~ 295 (300)
+.+++.+.+.
T Consensus 185 i~~a~~~A~~ 194 (538)
T PRK15424 185 VRQAFEDALD 194 (538)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 159
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=75.07 E-value=26 Score=29.80 Aligned_cols=54 Identities=17% Similarity=-0.058 Sum_probs=43.3
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCC
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH 215 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~ 215 (300)
+.+.+++.+.+...+|++++++.+......+.+..+..|..+.+..+|+....+
T Consensus 123 ~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (187)
T PRK00107 123 SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLD 176 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCC
Confidence 345666666666667899999999988889999889999999999999875443
No 160
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=74.97 E-value=34 Score=34.20 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=67.4
Q ss_pred CEEEEEcCCCChhHHHHHHHhCCCeeEEEEee------------eeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHH--
Q 022234 178 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTY------------TTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRS-- 241 (300)
Q Consensus 178 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY------------~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~-- 241 (300)
+++++.+...-...+.+.|+++|.+|.-++-= ....-+...++.+++. ++.|.++.+.++..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 56777776666667888899888776544321 1111111223344433 5788888776654443
Q ss_pred HHHHhcccCCCCceEE--EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 242 WVNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 242 ~~~~~~~~~~~~~~vv--~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
......... .+.+++ +-.+...+.+++.|.+.++.|+ +.+.+.+.+.+.+|.
T Consensus 498 iv~~~~~~~-~~~~iiar~~~~~~~~~l~~~Gad~vv~p~----~~~a~~i~~~l~~~~ 551 (558)
T PRK10669 498 IVASAREKR-PDIEIIARAHYDDEVAYITERGANQVVMGE----REIARTMLELLETPP 551 (558)
T ss_pred HHHHHHHHC-CCCeEEEEECCHHHHHHHHHcCCCEEEChH----HHHHHHHHHHhcCCC
Confidence 333333322 344544 4577888889999999876544 455556666555543
No 161
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=74.32 E-value=47 Score=30.24 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=40.5
Q ss_pred cCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeC---------HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 225 ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIG---------ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG---------~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
+...|+++..|. ...+++.+. .+++++++. ...++.+.+.|.-..+.+...+.++|.++|.+.+.
T Consensus 250 l~~ad~~v~~sg--~~t~~Eam~----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 250 YAAADLVISRAG--ASTVAELAA----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred HHhcCEEEECCC--HhHHHHHHH----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 457788876554 233444443 256777652 23467788777654333333589999999988765
Q ss_pred c
Q 022234 296 E 296 (300)
Q Consensus 296 ~ 296 (300)
.
T Consensus 324 ~ 324 (350)
T cd03785 324 D 324 (350)
T ss_pred C
Confidence 3
No 162
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=72.05 E-value=57 Score=30.65 Aligned_cols=68 Identities=25% Similarity=0.184 Sum_probs=56.4
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHH
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 293 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~ 293 (300)
.++|.|++.-|..+....+..++... .+...-+--..|++.+.++|.+.++.|..-+.+.+.+.+.+.
T Consensus 91 ~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 91 LGVDAVIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred cCCCEEEEcCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 48999999999999988777654332 366777889999999999999988889999999998877653
No 163
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=71.94 E-value=23 Score=27.08 Aligned_cols=70 Identities=19% Similarity=0.016 Sum_probs=45.4
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC--hHHHHHHHHHHHH--cCCCCceEEEEccc
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS--PEAGSVFLEAWKE--AGTPNVRIGVVGAG 136 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS--~~av~~~~~~l~~--~~~~~~~i~aVG~~ 136 (300)
-..++..|+++|+++..+.... +.+++.+.+...++|.|.|++ ........+..+. ...++.++++-|+.
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~-----~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANV-----PPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB------HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCeEEEECCCC-----CHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 4678999999999988764422 124555555566899999976 3333333333322 23457899999987
No 164
>PRK10537 voltage-gated potassium channel; Provisional
Probab=71.38 E-value=32 Score=32.95 Aligned_cols=115 Identities=13% Similarity=0.095 Sum_probs=74.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEe----------ee--CCCchhHHHhhhcCCccEEEEeChHHHHHHH
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQH----------AQ--GPDTDRLSSVLNDTIFDWIIITSPEAGSVFL 117 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~----------~~--~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~ 117 (300)
..+|+|+.-..-...+.+.|+++|.+++.+---+. .. ..+.+.+++ ....+.++++.++.+..+...
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~-AgI~~A~aVI~~t~dD~~Nl~ 318 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKK-AGAARARAILALRDNDADNAF 318 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHh-cCcccCCEEEEcCCChHHHHH
Confidence 56799998888888899999999987754321000 00 012122222 145788999999888766665
Q ss_pred HHH--HHcCCCCceEEE--EccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 118 EAW--KEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 118 ~~l--~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
-.+ ++.+ ++.++++ -.+...+.+++. |.+..+.|..-.++.+++.+..
T Consensus 319 ivL~ar~l~-p~~kIIa~v~~~~~~~~L~~~------GaD~VIsp~~l~g~~la~~l~g 370 (393)
T PRK10537 319 VVLAAKEMS-SDVKTVAAVNDSKNLEKIKRV------HPDMIFSPQLLGSELLARTLNG 370 (393)
T ss_pred HHHHHHHhC-CCCcEEEEECCHHHHHHHHhc------CCCEEECHHHHHHHHHHHHhcC
Confidence 433 3333 3455554 456667788888 9988788876667777766643
No 165
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=71.26 E-value=28 Score=26.47 Aligned_cols=75 Identities=11% Similarity=0.193 Sum_probs=42.1
Q ss_pred EEEEEcCCCCh-----hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhccc-CCC
Q 022234 179 TVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDT-EQW 252 (300)
Q Consensus 179 ~vL~~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~-~~~ 252 (300)
+||+.|+.+.. +.+.+.++++|.++.-. .+... +..+...++|+ ++.+|. +++.++.+++. ...
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~-a~~~~-------e~~~~~~~~Dv-ill~PQ-v~~~~~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAA-AGAYG-------SHYDMIPDYDL-VILAPQ-MASYYDELKKDTDRL 71 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE-EeeHH-------HHHHhccCCCE-EEEcCh-HHHHHHHHHHHhhhc
Confidence 68888877753 35677888999875422 21111 12223467884 445554 45555555432 123
Q ss_pred CceEEEeCHHH
Q 022234 253 SNSVACIGETT 263 (300)
Q Consensus 253 ~~~vv~IG~~T 263 (300)
++++..|-+..
T Consensus 72 ~ipv~~I~~~~ 82 (99)
T cd05565 72 GIKLVTTTGKQ 82 (99)
T ss_pred CCCEEEeCHHH
Confidence 57787776643
No 166
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=70.51 E-value=6.5 Score=35.43 Aligned_cols=138 Identities=20% Similarity=0.280 Sum_probs=77.0
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhh--cCCccEEEEe-----------ChHHHHHHHHHHHHcCC---C
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--DTIFDWIIIT-----------SPEAGSVFLEAWKEAGT---P 126 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~--~~~~d~ivFT-----------S~~av~~~~~~l~~~~~---~ 126 (300)
.+.-+.|.+.|++=+.+--+.+.|..+++.+.+.+. ...|+-|.+. |..-.+.+.+.+.+.-. .
T Consensus 61 ~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~~ 140 (262)
T PF06180_consen 61 EEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKKRK 140 (262)
T ss_dssp HHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT-T
T ss_pred HHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhccccCC
Confidence 456677888999888877778777666666655542 3457766654 46677778877765432 4
Q ss_pred CceEEEEccchHH-------HHHHHhhccCCCcccccc---CCCCcHHHHHHhcccCCCCCCE-----EEEEcCCCChh-
Q 022234 127 NVRIGVVGAGTAS-------IFEEVIQSSKCSLDVAFS---PSKATGKILASELPKNGKKKCT-----VLYPASAKASN- 190 (300)
Q Consensus 127 ~~~i~aVG~~Ta~-------~L~~~~~~~~~G~~~~~~---p~~~~~e~L~~~L~~~~~~~~~-----vL~~rg~~~~~- 190 (300)
+-.++-+|.+|.. .|+..+. ..|....++ -..++-+.+++.|.+... ++ ++++.|+...+
T Consensus 141 ~~a~vlmGHGt~h~an~~Y~~l~~~l~--~~~~~~v~vgtvEG~P~~~~vi~~L~~~g~--k~V~L~PlMlVAGdHa~nD 216 (262)
T PF06180_consen 141 DEAVVLMGHGTPHPANAAYSALQAMLK--KHGYPNVFVGTVEGYPSLEDVIARLKKKGI--KKVHLIPLMLVAGDHAKND 216 (262)
T ss_dssp TEEEEEEE---SCHHHHHHHHHHHHHH--CCT-TTEEEEETTSSSBHHHHHHHHHHHT---SEEEEEEESSS--HHHHCC
T ss_pred CCEEEEEeCCCCCCccHHHHHHHHHHH--hCCCCeEEEEEeCCCCCHHHHHHHHHhcCC--CeEEEEecccccchhhhhh
Confidence 6778889988743 3333321 125443333 224567888888876432 33 34446655433
Q ss_pred -------HHHHHHHhCCCeeE
Q 022234 191 -------EIEEGLSNRGFEVV 204 (300)
Q Consensus 191 -------~L~~~L~~~G~~v~ 204 (300)
.....|++.|+.|+
T Consensus 217 maGde~dSWks~L~~~G~~v~ 237 (262)
T PF06180_consen 217 MAGDEEDSWKSRLEAAGFEVT 237 (262)
T ss_dssp CCSSSTTSHHHHHHHTT-EEE
T ss_pred hcCCCcchHHHHHHHCCCEEE
Confidence 44788999997763
No 167
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=70.50 E-value=56 Score=28.57 Aligned_cols=147 Identities=13% Similarity=0.098 Sum_probs=81.6
Q ss_pred CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 022234 127 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 127 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 206 (300)
+.--.++|-+|.+++.++ +++-. ..+.-+.++.+.+.. +-++|.++.. -......|+ .++
T Consensus 77 ~p~e~tlGvAaiNAvsq~------~~dl~----~~~~~Dil~li~~~d-~IkmI~~fg~---m~p~v~~l~------ek~ 136 (250)
T COG2014 77 DPIERTLGVAAINAVSQY------YIDLE----EANWFDILDLIQRDD-KIKMIAEFGN---MPPVVRTLK------EKF 136 (250)
T ss_pred cHHHHhhhHHHHHHHHHH------hhhHH----hcchHHHHHHHcCCC-ceeEEEecCC---CChHHHHhh------hhe
Confidence 334467899999999998 66532 334555665555432 2345666544 233344555 335
Q ss_pred EeeeeeeCCCCc------HHHHHH-cCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHH---HHHHHcCCCeEE
Q 022234 207 NTYTTEPVHHVD------QTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTA---SAAKRLGLKNVY 276 (300)
Q Consensus 207 ~vY~~~~~~~~~------~~~~~~-l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta---~~l~~~G~~~~~ 276 (300)
.+|.-.+....+ +....+ +...|+|+.+-+.-+..-++.+-+......-++-+||++- +.+...|+..+.
T Consensus 137 ~v~~~er~~~~pkr~t~~d~~e~~iLP~~Dvii~SaStlvN~T~d~~Ld~ak~ak~vvl~GPTa~l~pe~f~~~gvt~ia 216 (250)
T COG2014 137 EVYVFERNPKLPKRGTLSDTLEYQILPEVDVIIASASTLVNGTLDMILDRAKKAKLVVLTGPTAQLLPEFFKGTGVTHIA 216 (250)
T ss_pred EEEEeccCccCcccccccchhhhhhcccccEEEEechhhhcCcHHHHHhhhccCcEEEEeCCCcccchhHHhccCcceEE
Confidence 666654333322 112222 4678988887766665555544322112345566788653 456667877543
Q ss_pred ecCCCCHHHHHHHHHHH
Q 022234 277 YPTHPGLEGWVDSILEA 293 (300)
Q Consensus 277 v~~~p~~~~l~~ai~~~ 293 (300)
--+--+++.++..++..
T Consensus 217 g~kIiDp~~~L~klk~~ 233 (250)
T COG2014 217 GTKIIDPDKALLKLKFA 233 (250)
T ss_pred eeeecCHHHHHHHhhhc
Confidence 23335777776666543
No 168
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=70.39 E-value=39 Score=30.41 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=56.6
Q ss_pred CCCeEEEeCCCCc--hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-----------HH
Q 022234 49 SNPKVVVTRERGK--NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-----------SV 115 (300)
Q Consensus 49 ~g~~VlitR~~~~--~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-----------~~ 115 (300)
.++||+|.+..+- ..+....|++.|+++..+++-...... . .+.+||.|||....+. ..
T Consensus 2 ~~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~--~------~l~~~DgLvipGGfs~gD~l~~g~~~~~~ 73 (261)
T PRK01175 2 ESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAER--K------SVSDYDCLVIPGGFSAGDYIRAGAIFAAR 73 (261)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccc--c------chhhCCEEEECCCCCcccccccchhhHHH
Confidence 4678888877543 357789999999999888764321110 0 2457899998886321 11
Q ss_pred H----HHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccc
Q 022234 116 F----LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 154 (300)
Q Consensus 116 ~----~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 154 (300)
+ .+.+++....+.+++.|.-.. +.|-+. |+-+
T Consensus 74 l~~~l~~~Ik~f~~~gkpVLGICnG~-QlLa~~------GlLp 109 (261)
T PRK01175 74 LKAVLRKDIEEFIDEGYPIIGICNGF-QVLVEL------GLLP 109 (261)
T ss_pred HHHHHHHHHHHHHHCCCeEEEECHHH-HHHHHC------CCCC
Confidence 1 122222222467888888765 677777 8764
No 169
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=70.00 E-value=44 Score=31.85 Aligned_cols=163 Identities=9% Similarity=0.062 Sum_probs=89.2
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceE
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRI 130 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i 130 (300)
|+|++...-+ ...+.|++.| ++...|-.. . ..+ ...++|.++..|..-+..-. + +. .++|+
T Consensus 1 mkIl~d~~~~---~~~~~~~~~~-ev~~~~~~~---~-~~~------~l~daD~liv~s~t~v~~~l--l-~~--~~Lk~ 61 (378)
T PRK15438 1 MKILVDENMP---YARELFSRLG-EVKAVPGRP---I-PVA------QLADADALMVRSVTKVNESL--L-AG--KPIKF 61 (378)
T ss_pred CEEEEeCCcc---hHHHHHhhcC-cEEEeCCCC---C-CHH------HhCCCcEEEEcCCCCCCHHH--h-cC--CCCeE
Confidence 4688875432 3335555554 776665321 1 111 24679999887764443322 2 11 34554
Q ss_pred EE-Eccch----HHHHHHHhhccCCCccccccCCCCcHHHHHHhc-------cc---CCCCCCEEEEEcCCCChhHHHHH
Q 022234 131 GV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------PK---NGKKKCTVLYPASAKASNEIEEG 195 (300)
Q Consensus 131 ~a-VG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L-------~~---~~~~~~~vL~~rg~~~~~~L~~~ 195 (300)
+. .|..+ .+++++. |+.+...|. .++...+++. .+ ....|+++.+++-..-...+.+.
T Consensus 62 I~~~~~G~D~iD~~~~~~~------gI~v~napg-~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~ 134 (378)
T PRK15438 62 VGTATAGTDHVDEAWLKQA------GIGFSAAPG-CNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQAR 134 (378)
T ss_pred EEECcccccccCHHHHHHC------CCEEEECCC-cCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHH
Confidence 32 22323 2567788 998876664 3333333321 12 12368899999776666778999
Q ss_pred HHhCCCeeEEEEeeeeeeCCC-CcHHHHHHcCCCCEEEEEChHHH
Q 022234 196 LSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASPSAV 239 (300)
Q Consensus 196 L~~~G~~v~~~~vY~~~~~~~-~~~~~~~~l~~~d~IvftS~s~v 239 (300)
|+..|.+|..+.-+....... ....+-+.+...|+|++..|.+-
T Consensus 135 l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~ 179 (378)
T PRK15438 135 LEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFK 179 (378)
T ss_pred HHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCC
Confidence 999998775544332211111 01112222357899999888654
No 170
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=69.82 E-value=28 Score=36.08 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=65.0
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-----HHHHHHHHhcccCCCCceEEEeC
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACIG 260 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s-----~v~~~~~~~~~~~~~~~~vv~IG 260 (300)
+.+...+.|+..|++|..-..+ .++++..+.. .+.|+|++.|.. .+..+++.+++.+..++++++=|
T Consensus 598 ra~fv~~~l~~~GfeV~~~~~~------~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG 671 (714)
T PRK09426 598 GAKVIATAFADLGFDVDIGPLF------QTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGG 671 (714)
T ss_pred hHHHHHHHHHhCCeeEecCCCC------CCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 3567778999999887322222 1222333332 478899988865 45555666665543345566443
Q ss_pred ---HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 261 ---ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 261 ---~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
+...+.++++|+... +....+..++++.+.+.+.
T Consensus 672 ~~~~~~~~~l~~aGvD~~-i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 672 VIPPQDYDFLYEAGVAAI-FGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCChhhHHHHHhCCCCEE-ECCCCCHHHHHHHHHHHHH
Confidence 444568899999864 5666689999998888773
No 171
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=69.71 E-value=90 Score=29.45 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=122.0
Q ss_pred CCCCCeEEEeC---CC-CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHH
Q 022234 47 SNSNPKVVVTR---ER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKE 122 (300)
Q Consensus 47 ~l~g~~VlitR---~~-~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~ 122 (300)
....++|-+.. .. .+..++.+.|++.|+++..++.-. ...+++. +.+..+.-+..++.+...+.+.+++
T Consensus 141 ~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~----~t~~e~~---~~~~A~lniv~~~~~~~~~a~~L~e 213 (398)
T PF00148_consen 141 EKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGG----TTLEEIR---KAPEAALNIVLCPEGGPYAAEWLEE 213 (398)
T ss_dssp TTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETT----BCHHHHH---HGGGSSEEEESSCCHHHHHHHHHHH
T ss_pred cCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCC----CCHHHHH---hCCcCcEEEEeccchhhHHHHHHHH
Confidence 33344666542 22 366799999999999777655311 1223332 4567788888888877767777766
Q ss_pred cCCCCceEEE----Ecc-chHHHHHHHhhccCCCccccccCCC--CcHHHHHHhcccC--CCCCCEEEEEcCCCChhHHH
Q 022234 123 AGTPNVRIGV----VGA-GTASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIE 193 (300)
Q Consensus 123 ~~~~~~~i~a----VG~-~Ta~~L~~~~~~~~~G~~~~~~p~~--~~~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~ 193 (300)
.. +++.+. +|. .|.+.+++.. . .-|... .+.. ..-+...+.+.+. ...|+++++..+....-.|.
T Consensus 214 ~~--giP~~~~~~p~G~~~t~~~l~~i~-~-~lg~~~--~~~~i~~~~~~~~~~l~~~~~~l~g~~v~i~~~~~~~~~l~ 287 (398)
T PF00148_consen 214 RF--GIPYLYFPSPYGIEGTDAWLRAIA-E-ALGKPI--AEAEIAEERERAEDALADYRERLGGKRVAIYGDPDRALGLA 287 (398)
T ss_dssp HH--T-EEEEEC-SBSHHHHHHHHHHHH-H-HHTHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-EEEEESSHHHHHHHH
T ss_pred Hh--CCCeeeccccccHHHHHHHHHHHH-H-HhCCch--hhHHHHHHHHHHHHHHHhhHHhhcCceEEEEcCchhHHHHH
Confidence 41 334443 443 3455555541 0 003111 0110 0011222222221 12478999888877777899
Q ss_pred HHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCC-CEEEEE-ChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHc-
Q 022234 194 EGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSI-PVVAVA-SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRL- 270 (300)
Q Consensus 194 ~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~-d~Ivft-S~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~- 270 (300)
..|.+.|+++..+.++....... +++...+... +.|+++ +...++..+...+ ..++.-+......+++.
T Consensus 288 ~~L~elG~~v~~v~~~~~~~~~~--e~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------pdl~ig~~~~~~~a~~~~ 359 (398)
T PF00148_consen 288 RFLEELGMEVVAVGCDDKSPEDE--ERLRWLLEESDPEVIIDPDPEEIEELLEELK------PDLLIGSSHERYLAKKLG 359 (398)
T ss_dssp HHHHHTT-EEEEEEESSGGHHHH--HHHHHHHHTTCSEEEESCBHHHHHHHHHHHT-------SEEEESHHHHHHHHHTT
T ss_pred HHHHHcCCeEEEEEEccCchhHH--HHHHHHhhCCCcEEEeCCCHHHHHHHHHhcC------CCEEEechhhHHHHHHhC
Confidence 99999999998877766532222 2222223232 355554 6666665555433 34556666666667777
Q ss_pred ------CCCeEEec-----CCCCHHHHHHHHHHHH
Q 022234 271 ------GLKNVYYP-----THPGLEGWVDSILEAL 294 (300)
Q Consensus 271 ------G~~~~~v~-----~~p~~~~l~~ai~~~~ 294 (300)
|+...... .....++.+..+++..
T Consensus 360 ~~~~~~~~P~~~~~~~~~~~~~Gy~G~~~l~e~i~ 394 (398)
T PF00148_consen 360 IPLIRIGFPVFDRISLTYRPYMGYEGALNLLEEIA 394 (398)
T ss_dssp --EEE-SSSEEESSSGGGS-SSHHHHHHHHHHHHH
T ss_pred CCeEEEeCCeeeeecCCCCCcEeHHHHHHHHHHHH
Confidence 66532211 1234566666666544
No 172
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=69.69 E-value=1.1e+02 Score=29.48 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=29.8
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEe
Q 022234 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (300)
.+|+.|.||...-+-. +...+...|.+.|++|...
T Consensus 27 ~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~ 62 (406)
T TIGR00936 27 EKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWT 62 (406)
T ss_pred cCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEE
Confidence 4999999999987764 6678999999999998765
No 173
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=69.60 E-value=85 Score=28.82 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=56.0
Q ss_pred EEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEE
Q 022234 179 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVAC 258 (300)
Q Consensus 179 ~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~ 258 (300)
.++++.|....+.+.+.++ .|.+ +..+... .. ..+.+...|+++..|. -..+++.+. .+.++++
T Consensus 214 ~~~~~~G~g~~~~~~~~~~-~~~~---v~~~g~~---~~---~~~~~~~~d~~i~~~g--~~~~~Ea~~----~g~Pvv~ 277 (357)
T PRK00726 214 QVIHQTGKGDLEEVRAAYA-AGIN---AEVVPFI---DD---MAAAYAAADLVICRAG--ASTVAELAA----AGLPAIL 277 (357)
T ss_pred EEEEEcCCCcHHHHHHHhh-cCCc---EEEeehH---hh---HHHHHHhCCEEEECCC--HHHHHHHHH----hCCCEEE
Confidence 4555666666666665554 5544 2222211 11 1222346787776664 223334333 2567777
Q ss_pred eCH-------H--HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 259 IGE-------T--TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 259 IG~-------~--Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
+.. . .++.+.+.|.-..+.+...+.++|.++|.+.+..
T Consensus 278 ~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 278 VPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD 324 (357)
T ss_pred ecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC
Confidence 631 1 3567777776443333445689999999987754
No 174
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=68.03 E-value=93 Score=28.05 Aligned_cols=139 Identities=18% Similarity=0.160 Sum_probs=77.5
Q ss_pred hcCCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCC
Q 022234 98 NDTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK 175 (300)
Q Consensus 98 ~~~~~d~ivFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~ 175 (300)
...+.+.|+-+ +..........+.+. +++++.....+.. ... .....+.|.. .....+++.+.+..
T Consensus 66 ~~~~v~~vvg~~~s~~~~~~~~~~~~~---~ip~i~~~~~~~~--~~~------~~~f~~~~~~~~~~~~~~~~~~~~~- 133 (343)
T PF13458_consen 66 DDDGVDAVVGPLSSAQAEAVAPIAEEA---GIPYISPSASSPS--PDS------PNVFRLSPSDSQQAAALAEYLAKKL- 133 (343)
T ss_dssp HTSTESEEEESSSHHHHHHHHHHHHHH---T-EEEESSGGGGT--TTH------TTEEESS--HHHHHHHHHHHHHHTT-
T ss_pred hhcCcEEEEecCCcHHHHHHHHHHHhc---CcEEEEeeccCCC--CCC------CcEEEEeccccHHHHHHHHHHHHHc-
Confidence 44778888875 666667777777664 3455554333321 111 2222223332 34567777765533
Q ss_pred CCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEE-EChHHHHHHHHHhc
Q 022234 176 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLIS 247 (300)
Q Consensus 176 ~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivf-tS~s~v~~~~~~~~ 247 (300)
+.+++.++..+.. ...+.+.+++.|.++.....|. ....+....++++ .+.|+|++ ..+...-.|+..+.
T Consensus 134 g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~~~ 211 (343)
T PF13458_consen 134 GAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYP--PGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFLRQLR 211 (343)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE---TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHHHHHH
T ss_pred CCcEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecc--cccccchHHHHHHhhcCCCEEEEeccchhHHHHHHHHH
Confidence 3578888865542 4467889999998864443343 2222222334433 47887666 46666778888777
Q ss_pred ccC
Q 022234 248 DTE 250 (300)
Q Consensus 248 ~~~ 250 (300)
+.+
T Consensus 212 ~~~ 214 (343)
T PF13458_consen 212 QLG 214 (343)
T ss_dssp HTT
T ss_pred hhc
Confidence 654
No 175
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=67.97 E-value=20 Score=28.03 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH---------HHHHHHHHHHHcCCCCceEEEE
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGVV 133 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~---------av~~~~~~l~~~~~~~~~i~aV 133 (300)
+.+.+.+.+.|+++..+++-+.. .. .+..+|.|||-|+. .+..|++.+......+.+++++
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~~----~~------~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vf 86 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADAD----AE------DLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALF 86 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccCC----HH------HHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEE
Confidence 44555666678887665543221 11 23468999998866 2245666665544456677777
Q ss_pred cc
Q 022234 134 GA 135 (300)
Q Consensus 134 G~ 135 (300)
|-
T Consensus 87 gt 88 (140)
T TIGR01753 87 GS 88 (140)
T ss_pred ec
Confidence 64
No 176
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=67.10 E-value=89 Score=27.51 Aligned_cols=191 Identities=12% Similarity=-0.008 Sum_probs=91.2
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.+.+.++++|+.++..... .+.+. ..+.+....+|.||+++... .....+.+.+ .+++++.+|....
T Consensus 21 gi~~~a~~~gy~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~---~~iPvV~~d~~~~ 92 (280)
T cd06315 21 GVREAAKAIGWNLRILDGR-----GSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQK---AGIPVVGWHAGPE 92 (280)
T ss_pred HHHHHHHHcCcEEEEECCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH---CCCCEEEecCCCC
Confidence 3446778889887665321 12221 21222357899999987532 2333343433 3678889886421
Q ss_pred HHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh------hHHHHHHHhC-CCeeEEEEeee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNR-GFEVVRLNTYT 210 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~------~~L~~~L~~~-G~~v~~~~vY~ 210 (300)
..-... + ..+. .+..+.+ .+..+++.|.+.....++++++.+.... .-+...++.. +..+....-+.
T Consensus 93 ~~~~~~---~-~~~~-~v~~D~~~~~~~~~~~L~~~~~G~~~i~~i~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~ 167 (280)
T cd06315 93 PGPIEE---P-GIFY-NVTTDPLAVAEVAALYAIANSGGKAGVVIFTDSRFSIAKAKANAMKEIIEACKGCTVLSIEDVP 167 (280)
T ss_pred CCcccC---C-ceeE-EecCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCccHHHHHHHHHHHHHhCCCCEEEEecccC
Confidence 100000 0 0011 1222222 2345555665542234688888654321 2333344332 23331111111
Q ss_pred eeeCCC-Cc---HHHHHHc-CCCCEEEEEChHHHHHHHHHhcccCCC---CceEEEeCHHHHHHH
Q 022234 211 TEPVHH-VD---QTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQW---SNSVACIGETTASAA 267 (300)
Q Consensus 211 ~~~~~~-~~---~~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~~~~---~~~vv~IG~~Ta~~l 267 (300)
...... .. .++++.. ..+|+|+..|-..+...+..+.+.+.. +..+++.+..+...+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~D~~A~g~~~~l~~~g~~~p~~~~~i~~~d~~~~~~ 232 (280)
T cd06315 168 ISRTATRMPALTARLLQRYGDKWTHSLAINDLYFDYMAPPLASAGRKADEDPRNISAGDGSAAAF 232 (280)
T ss_pred cchhhhhhHHHHHHHHHhcCcccceecccchhhhHHhHHHHHHhcccCCCCceEEecCCCCHHHH
Confidence 100000 01 1222221 347999999999888888877766532 455666544444444
No 177
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=66.79 E-value=56 Score=25.01 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=53.1
Q ss_pred CEEEEEcCCCCh-----hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhccc-
Q 022234 178 CTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDT- 249 (300)
Q Consensus 178 ~~vL~~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~- 249 (300)
++||++||.+-. ..+.+.++++|+++. +... .. .+..+.. .++|+|+. .| .+++..+.+.+.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~---i~a~---~~--~e~~~~~~~~~~DvIll-~P-Qi~~~~~~i~~~~ 71 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIE---VDAI---TA--TEGEKAIAAAEYDLYLV-SP-QTKMYFKQFEEAG 71 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceE---EEEe---cH--HHHHHhhccCCCCEEEE-Ch-HHHHHHHHHHHHh
Confidence 479999998853 345667788887632 2111 11 1111111 35785544 44 455555555432
Q ss_pred CCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHH
Q 022234 250 EQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 293 (300)
Q Consensus 250 ~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~ 293 (300)
...++++.+|.+. ++-|-..+.+.+++.|.+.
T Consensus 72 ~~~~ipv~~I~~~------------~Y~~~~~~~~~~~~~~~~~ 103 (104)
T PRK09590 72 AKVGKPVVQIPPQ------------AYIPIPMGIEKMAKLILEN 103 (104)
T ss_pred hhcCCCEEEeCHH------------HcCCCccCHHHHHHHHHhc
Confidence 1247889888873 2334456788888877654
No 178
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=66.37 E-value=59 Score=27.03 Aligned_cols=127 Identities=10% Similarity=0.096 Sum_probs=70.8
Q ss_pred eEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC-CCCCEEEEEcCCCC-hhHHHHHHHhCCCeeEEE
Q 022234 129 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG-KKKCTVLYPASAKA-SNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 129 ~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~-~~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~ 206 (300)
-+++=|.....+++-. |... |...++-+|...+.+.. ..+.++.++.|... .+.+.+.|++..-.+.-+
T Consensus 8 lv~~DG~~i~~~~~~~------g~~~---~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~iv 78 (172)
T PF03808_consen 8 LVLPDGMPIVWAARLL------GRPL---PERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIV 78 (172)
T ss_pred EEecCCHHHHHHHHHc------CCCC---CcccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEE
Confidence 3566777777777776 7654 45566666666665433 24578888887765 566777888773333323
Q ss_pred EeeeeeeCCCCcHHHHHHc--CCCCEEEE--EChHHHHHHHHHhcccCCCCceEEEeCHHHHHH
Q 022234 207 NTYTTEPVHHVDQTVLKQA--LSIPVVAV--ASPSAVRSWVNLISDTEQWSNSVACIGETTASA 266 (300)
Q Consensus 207 ~vY~~~~~~~~~~~~~~~l--~~~d~Ivf--tS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~ 266 (300)
-.|.--..+...+++++.+ .++|+|++ .+|.+= .|+...... +....++|+|...--.
T Consensus 79 g~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~-l~~~v~i~vG~~~d~~ 140 (172)
T PF03808_consen 79 GYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQE-RWIARHRQR-LPAGVIIGVGGAFDFL 140 (172)
T ss_pred EecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHH-CCCCEEEEECchhhhh
Confidence 3333212222233444444 36776554 455554 344443332 2334788899755433
No 179
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=65.98 E-value=91 Score=28.71 Aligned_cols=202 Identities=13% Similarity=0.073 Sum_probs=93.3
Q ss_pred CCeEEEeCCCCch-------HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHH
Q 022234 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFL 117 (300)
Q Consensus 50 g~~VlitR~~~~~-------~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~ 117 (300)
.++|.+.-|...+ ..+.+.++++|+++.....-. ..+.+...+.+ ....+|.||+.+.. .+....
T Consensus 46 t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~---~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l 122 (343)
T PRK10936 46 AWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGG---YYNLAKQQQQLEQCVAWGADAILLGAVTPDGLNPDL 122 (343)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCC---CCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHH
Confidence 4566655444222 244556677888776653211 11222111222 24679999997633 221222
Q ss_pred HHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCc-HHHHHHhcccCC---CCCCEEEEEcCCCCh----
Q 022234 118 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNG---KKKCTVLYPASAKAS---- 189 (300)
Q Consensus 118 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~---~~~~~vL~~rg~~~~---- 189 (300)
.+.+ .++++++++..... . +....+..+.+. +...++.|.+.. .+.++++++.|....
T Consensus 123 -~~~~---~giPvV~~~~~~~~----~------~~~~~V~~D~~~~g~~aa~~L~~~~~~~~g~~~i~~i~g~~~~~~~~ 188 (343)
T PRK10936 123 -ELQA---ANIPVIALVNGIDS----P------QVTTRVGVSWYQMGYQAGRYLAQWHPKGSKPLNVALLPGPEGAGGSK 188 (343)
T ss_pred -HHHH---CCCCEEEecCCCCC----c------cceEEEecChHHHHHHHHHHHHHHHHhcCCCceEEEEECCCCCchHH
Confidence 2222 36788877543211 1 110112222222 233333343321 123689888775432
Q ss_pred ---hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEe--
Q 022234 190 ---NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACI-- 259 (300)
Q Consensus 190 ---~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~I-- 259 (300)
.-+.+.+++.|+++.. .++. ........+..+. + .++|+|+ .+...+...+..+.+.+. .++.++++
T Consensus 189 ~R~~Gf~~~l~~~~i~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~d~~A~ga~~al~~~g~~~di~Vvg~~~ 265 (343)
T PRK10936 189 AVEQGFRAAIAGSDVRIVD-IAYG-DNDKELQRNLLQELLERHPDIDYIA-GSAVAAEAAIGELRGRNLTDKIKLVSFYL 265 (343)
T ss_pred HHHHHHHHHHhcCCCEEEE-eecC-CCcHHHHHHHHHHHHHhCCCccEEE-eCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 2345567777766533 1111 1111111111222 2 3578887 455555555665555443 35666663
Q ss_pred CHHHHHHHHHcCC
Q 022234 260 GETTASAAKRLGL 272 (300)
Q Consensus 260 G~~Ta~~l~~~G~ 272 (300)
.|...+++++ |.
T Consensus 266 ~p~~~~~i~~-G~ 277 (343)
T PRK10936 266 SHQVYRGLKR-GK 277 (343)
T ss_pred CHHHHHHHHc-CC
Confidence 5566666655 54
No 180
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=65.53 E-value=23 Score=29.42 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=20.9
Q ss_pred HHHHcCCCCEEEEECh-------HHHHHHHHHhc
Q 022234 221 VLKQALSIPVVAVASP-------SAVRSWVNLIS 247 (300)
Q Consensus 221 ~~~~l~~~d~IvftS~-------s~v~~~~~~~~ 247 (300)
+.+.+...|+|||.|| ...++|++.+.
T Consensus 62 ~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~ 95 (174)
T TIGR03566 62 ILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVD 95 (174)
T ss_pred HHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcC
Confidence 4444568899999998 67888888765
No 181
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=65.05 E-value=1.2e+02 Score=29.44 Aligned_cols=145 Identities=11% Similarity=0.091 Sum_probs=81.9
Q ss_pred CchHHHHHHHHhCCCCEEEeeeeEe-------------eeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CC
Q 022234 60 GKNGKLIKALAKHRIDCLELPLIQH-------------AQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GT 125 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~i~~-------------~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~ 125 (300)
.+..++.+.|++.|+++..+|=+.- .+..+ ..+++.-..++...-+..++.+ ....+.|++. +.
T Consensus 181 ~d~~elk~lL~~~Gl~~~~l~d~s~~ld~~~~~~~~~~~~~gg-~t~eei~~~~~A~lniv~~~~~-~~~a~~Lee~~gi 258 (432)
T TIGR01285 181 GDIEELRRMVEAFGLKPIILPDLSRSLDGHLADDDFSPITQGG-TTLEQIRQIGQSCCTLAIGESM-RRAASLLADRCGV 258 (432)
T ss_pred cCHHHHHHHHHHcCCceEEecccccccCCCCCCCccceeCCCC-CcHHHHHhhccCcEEEEEChhH-HHHHHHHHHHHCC
Confidence 5678999999999999988774321 11111 1222222344444444457664 5667777653 33
Q ss_pred CCceE-EEEcc-chHHHHHHHhhccCCCccccccCCCCc--HHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhC
Q 022234 126 PNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNR 199 (300)
Q Consensus 126 ~~~~i-~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~ 199 (300)
+-... .-+|- .|.+.+++.. .+-|.. +|+... -+.+.+.+.+. ...|+|+.+..+....-.|...|.+.
T Consensus 259 P~~~~~~p~G~~~t~~~l~~l~--~~~g~~---~~~~~~~~r~~~~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~el 333 (432)
T TIGR01285 259 PYIVFPSLMGLEAVDAFLHVLM--KISGRA---VPERFERQRRQLQDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTSM 333 (432)
T ss_pred CeEecCCCcChHHHHHHHHHHH--HHHCCC---ccHHHHHHHHHHHHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHHC
Confidence 22211 12565 5666666652 112443 232111 12233333321 23678998887666667889999999
Q ss_pred CCeeEEEEeeee
Q 022234 200 GFEVVRLNTYTT 211 (300)
Q Consensus 200 G~~v~~~~vY~~ 211 (300)
|+.+..+.++..
T Consensus 334 Gm~v~~~~~~~~ 345 (432)
T TIGR01285 334 GAQIVAAVTTTG 345 (432)
T ss_pred CCEEEEEEeCCC
Confidence 999977777654
No 182
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=64.32 E-value=41 Score=29.14 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=55.6
Q ss_pred CeEEEeCCC-CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe----ChHHHHHHHHHHHHcCC
Q 022234 51 PKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT----SPEAGSVFLEAWKEAGT 125 (300)
Q Consensus 51 ~~VlitR~~-~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT----S~~av~~~~~~l~~~~~ 125 (300)
|+|++.... .....+.+.|++.|+.+..+|.-... ....... ...+|.||++ ++.....-.+.+++...
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~----~~~~~~~--~~~~dgliisGGp~~~~~~~~~~~~i~~~~~ 74 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPR----LADEAAV--AAQFDGVLLSPGPGTPERAGASIDMVRACAA 74 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcC----HHHHHHh--hcCCCEEEECCCCCChhhcchHHHHHHHHHh
Confidence 456666543 34567889999999999998875421 1111111 3579999998 55433322222332222
Q ss_pred CCceEEEEccchHHHHHHHhhccCCCcccc
Q 022234 126 PNVRIGVVGAGTASIFEEVIQSSKCSLDVA 155 (300)
Q Consensus 126 ~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~ 155 (300)
.+++++.|.-.-.-....+ |-++.
T Consensus 75 ~~~PiLGIC~G~Qlla~a~------GG~v~ 98 (214)
T PRK07765 75 AGTPLLGVCLGHQAIGVAF------GATVD 98 (214)
T ss_pred CCCCEEEEccCHHHHHHHh------CCEEe
Confidence 3678888877755555555 77764
No 183
>PRK06703 flavodoxin; Provisional
Probab=64.31 E-value=22 Score=28.60 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh--------HHHHHHHHHHHHcCCCCceEEEEc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP--------EAGSVFLEAWKEAGTPNVRIGVVG 134 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~--------~av~~~~~~l~~~~~~~~~i~aVG 134 (300)
..+++.|++.|.++....+-+.. .. .+.++|.|+|-|+ ..+..|+..+.+....+.+++++|
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~----~~------~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg 89 (151)
T PRK06703 20 DLIKVSLDAFDHEVVLQEMDGMD----AE------ELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFG 89 (151)
T ss_pred HHHHHHHHhcCCceEEEehhhCC----HH------HHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEc
Confidence 34455566677776655442211 11 2457899999664 246777776655444567777776
Q ss_pred c
Q 022234 135 A 135 (300)
Q Consensus 135 ~ 135 (300)
-
T Consensus 90 ~ 90 (151)
T PRK06703 90 S 90 (151)
T ss_pred c
Confidence 4
No 184
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=63.83 E-value=1.1e+02 Score=27.49 Aligned_cols=148 Identities=10% Similarity=0.038 Sum_probs=76.8
Q ss_pred CCccEEEEeC-hHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCC
Q 022234 100 TIFDWIIITS-PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 177 (300)
Q Consensus 100 ~~~d~ivFTS-~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~ 177 (300)
...+.||... ..........+.+ .+++++..+..+. .+... .. ..-..+.+.. .....+++.+.+. ..
T Consensus 67 ~~v~avig~~~s~~~~~~~~~~~~---~~iP~i~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~--g~ 136 (336)
T cd06326 67 DKVFALFGYVGTPTTAAALPLLEE---AGVPLVGPFTGAS-SLRDP---PD-RNVFNVRASYADEIAAIVRHLVTL--GL 136 (336)
T ss_pred cCcEEEEeCCCchhHHHHHHHHHH---cCCeEEEecCCcH-HhcCC---CC-CceEEeCCChHHHHHHHHHHHHHh--CC
Confidence 4788888643 2223333344443 2567777654432 23211 00 1101112222 2245566666554 24
Q ss_pred CEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-HHHHHHHHHhccc
Q 022234 178 CTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLISDT 249 (300)
Q Consensus 178 ~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-s~v~~~~~~~~~~ 249 (300)
+++.++.... ....+.+.+++.|..+.....|... ..+....+.++ .++|+|++++. ..+-.+++.+.+.
T Consensus 137 ~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~~~~~ 214 (336)
T cd06326 137 KRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERN--TADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRALRKA 214 (336)
T ss_pred ceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCC--cccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHhc
Confidence 6887775443 2346778899999887555445422 11222223333 36899999874 4577788887765
Q ss_pred CCCCceEEEeC
Q 022234 250 EQWSNSVACIG 260 (300)
Q Consensus 250 ~~~~~~vv~IG 260 (300)
+. +.+++..+
T Consensus 215 G~-~~~~~~~~ 224 (336)
T cd06326 215 GG-GAQFYNLS 224 (336)
T ss_pred CC-CCcEEEEe
Confidence 53 45554443
No 185
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=63.72 E-value=20 Score=29.80 Aligned_cols=68 Identities=16% Similarity=0.027 Sum_probs=44.4
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHH-------c-CCCCceEEEE
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKE-------A-GTPNVRIGVV 133 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~-------~-~~~~~~i~aV 133 (300)
++.++..|++.|++|...|+=+... +++++||.||+-++-=-..|.+.+.+ . .....-+|||
T Consensus 18 A~~iA~~L~e~g~qvdi~dl~~~~~----------~~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~v 87 (175)
T COG4635 18 AEYIASHLRESGIQVDIQDLHAVEE----------PALEDYDAVVIGASIRYGHFHEAVQSFVKKHAEALSTKPSAFFSV 87 (175)
T ss_pred HHHHHHHhhhcCCeeeeeehhhhhc----------cChhhCceEEEecchhhhhhHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 4677888899999998888755543 13678999999887544444333322 1 1235668888
Q ss_pred ccchHH
Q 022234 134 GAGTAS 139 (300)
Q Consensus 134 G~~Ta~ 139 (300)
|....+
T Consensus 88 nl~a~k 93 (175)
T COG4635 88 NLTARK 93 (175)
T ss_pred ehhhcc
Confidence 865433
No 186
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=63.68 E-value=30 Score=27.59 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=49.8
Q ss_pred chHHHHHHHHhCCCCEEEeeeeE--ee-eCCCchhHHHhh---hcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEc
Q 022234 61 KNGKLIKALAKHRIDCLELPLIQ--HA-QGPDTDRLSSVL---NDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG 134 (300)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~i~--~~-~~~~~~~l~~~l---~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG 134 (300)
....+.+.|+..|+++...|... .. ...|..-....+ ....+|.+|+.|.-+ -|...+......+.++.++|
T Consensus 53 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~--Df~~~i~~lr~~G~~V~v~~ 130 (149)
T cd06167 53 RQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDS--DFVPLVERLRELGKRVIVVG 130 (149)
T ss_pred hHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCc--cHHHHHHHHHHcCCEEEEEc
Confidence 56889999999999999999874 22 222322111122 234688888888765 33333333222356666666
Q ss_pred c--chHHHHHHH
Q 022234 135 A--GTASIFEEV 144 (300)
Q Consensus 135 ~--~Ta~~L~~~ 144 (300)
. .+...|++.
T Consensus 131 ~~~~~s~~L~~~ 142 (149)
T cd06167 131 FEAKTSRELRKA 142 (149)
T ss_pred cCccChHHHHHh
Confidence 6 577777765
No 187
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=62.97 E-value=1.2e+02 Score=27.33 Aligned_cols=177 Identities=8% Similarity=0.082 Sum_probs=91.3
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccc
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
.+.+.+.++++|++++..+. ..+.+...+.+ .....|.||+.+.. ......+.+.+ .+++++.++..
T Consensus 17 ~~~i~~~a~~~g~~v~~~~~-----~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~---~~iPvV~~d~~ 88 (302)
T TIGR02634 17 RDIFVAAAESLGAKVFVQSA-----NGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKD---EGIKVVAYDRL 88 (302)
T ss_pred HHHHHHHHHhcCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHH---CCCeEEEecCc
Confidence 35677888899998866543 11222111222 34679999998753 33444444444 36789999865
Q ss_pred hHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhC----CCeeE
Q 022234 137 TASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR----GFEVV 204 (300)
Q Consensus 137 Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~----G~~v~ 204 (300)
... . .....+.... ..+..+++.|.+.. ..++++++.|.... .-+.+.+++. ++.+.
T Consensus 89 ~~~----~------~~~~~V~~d~~~~g~~~~~~L~~~g-~~~~i~~i~g~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~ 157 (302)
T TIGR02634 89 IND----A------DIDFYLSFDNEKVGEMQARAVLEAA-PKGNYFLMGGSPTDNNAKLLRGGQMKVLQPAIDSGDIKIV 157 (302)
T ss_pred CCC----C------CccEEEecCHHHHHHHHHHHHHhhC-CCCCEEEEeCCCCCcchHHHHHHHHHHHhhhccCCCeEEe
Confidence 311 1 1111122222 23445566665542 12367777665331 2223334432 12221
Q ss_pred EEEeeeeeeCCCCcH---HHHHH-c----CCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCH
Q 022234 205 RLNTYTTEPVHHVDQ---TVLKQ-A----LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 261 (300)
Q Consensus 205 ~~~vY~~~~~~~~~~---~~~~~-l----~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~ 261 (300)
. ..|. ...... +..+. + ..+++|+..+-..+...+..+.+.+. .++.+++++.
T Consensus 158 ~-~~~~---~~~~~~~~~~~~~~ll~~~~~~~~aI~~~~D~~A~g~~~al~~~g~~~di~Vvg~d~ 219 (302)
T TIGR02634 158 G-DQWV---DGWLPENALRIMENALTANDNKVDAVVASNDATAGGAIQALTAQGLAGKVPISGQDA 219 (302)
T ss_pred c-CcCC---CCCCHHHHHHHHHHHHHhCCCCccEEEECCCchHHHHHHHHHHCCCCCCeEEEcCCC
Confidence 0 0111 111111 11222 2 25899999988878778777776553 3677888864
No 188
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=62.95 E-value=1.1e+02 Score=27.21 Aligned_cols=198 Identities=13% Similarity=0.085 Sum_probs=99.7
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-HHHHHHHHHHHcCCC---
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-AGSVFLEAWKEAGTP--- 126 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-av~~~~~~l~~~~~~--- 126 (300)
|+|||.....++.++++.|.+.|. +.+++.+--.. . .........-+.+-+- ....+.+.+.+.+.+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~--v~~sv~t~~g~----~---~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vI 71 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY--VIVSVATSYGG----E---LLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVI 71 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC--EEEEEEhhhhH----h---hhccccCCceEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 789999998899999999999998 44444331110 0 0001111223344444 555555555544431
Q ss_pred --CceEEE-EccchHHHHHHHhhccCCCcccccc--CC-----------CCcHHHHHHhcccCCCCCCEEEEEcCCCChh
Q 022234 127 --NVRIGV-VGAGTASIFEEVIQSSKCSLDVAFS--PS-----------KATGKILASELPKNGKKKCTVLYPASAKASN 190 (300)
Q Consensus 127 --~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~--p~-----------~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~ 190 (300)
.-+++. |-....++.++. |+...-. |. -.+-++.++.+.+. .+++|++..|...-+
T Consensus 72 DATHPfA~~is~na~~a~~~~------~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~--~~~~iflttGsk~L~ 143 (249)
T PF02571_consen 72 DATHPFAAEISQNAIEACREL------GIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKEL--GGGRIFLTTGSKNLP 143 (249)
T ss_pred ECCCchHHHHHHHHHHHHhhc------CcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhc--CCCCEEEeCchhhHH
Confidence 222222 333334444444 5432100 00 12346666666443 348999998877655
Q ss_pred HHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEe---CH----HH
Q 022234 191 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI---GE----TT 263 (300)
Q Consensus 191 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~I---G~----~T 263 (300)
.+.. .... ...+|-++.+..... .-+..-++|..-.|-+.+.=..++++. ++.+++. |. .=
T Consensus 144 ~f~~-~~~~-----~~r~~~RvLp~~~~~---~g~~~~~iia~~GPfs~e~n~al~~~~---~i~~lVtK~SG~~g~~eK 211 (249)
T PF02571_consen 144 PFVP-APLP-----GERLFARVLPTPESA---LGFPPKNIIAMQGPFSKELNRALFRQY---GIDVLVTKESGGSGFDEK 211 (249)
T ss_pred HHhh-cccC-----CCEEEEEECCCcccc---CCCChhhEEEEeCCCCHHHHHHHHHHc---CCCEEEEcCCCchhhHHH
Confidence 5443 2222 234444443333221 012355678877777766444444443 2333322 21 12
Q ss_pred HHHHHHcCCCeEEe
Q 022234 264 ASAAKRLGLKNVYY 277 (300)
Q Consensus 264 a~~l~~~G~~~~~v 277 (300)
-++++++|+.++++
T Consensus 212 i~AA~~lgi~vivI 225 (249)
T PF02571_consen 212 IEAARELGIPVIVI 225 (249)
T ss_pred HHHHHHcCCeEEEE
Confidence 35677889987543
No 189
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=62.55 E-value=1.6e+02 Score=31.83 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=47.3
Q ss_pred eEEEEccchH-------HHHHHHhhccCCCcccc-----------ccCCCCcHHHHHHhcccCCCCCCEEEEEcC---CC
Q 022234 129 RIGVVGAGTA-------SIFEEVIQSSKCSLDVA-----------FSPSKATGKILASELPKNGKKKCTVLYPAS---AK 187 (300)
Q Consensus 129 ~i~aVG~~Ta-------~~L~~~~~~~~~G~~~~-----------~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg---~~ 187 (300)
-+.+|-.+|. ..+++.+ ||.+- ..-...+.+.+++.+.+.. + +-++|+.- ..
T Consensus 277 g~LvvsSATg~~rg~R~~LfReLl-----gFevG~~~~~LRNIvD~y~~~~~~e~~~elvk~lG-~-GgLIfV~~d~G~e 349 (1187)
T COG1110 277 GILVVSSATGKPRGSRLKLFRELL-----GFEVGSGGEGLRNIVDIYVESESLEKVVELVKKLG-D-GGLIFVPIDYGRE 349 (1187)
T ss_pred ceEEEeeccCCCCCchHHHHHHHh-----CCccCccchhhhheeeeeccCccHHHHHHHHHHhC-C-CeEEEEEcHHhHH
Confidence 4566666665 4677776 66551 1111244556555555443 3 45555554 44
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
-.+.|.+.|+.+|+++..+..+.....
T Consensus 350 ~aeel~e~Lr~~Gi~a~~~~a~~~~~l 376 (1187)
T COG1110 350 KAEELAEYLRSHGINAELIHAEKEEAL 376 (1187)
T ss_pred HHHHHHHHHHhcCceEEEeeccchhhh
Confidence 567899999999999877777654333
No 190
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=62.43 E-value=68 Score=30.34 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=50.9
Q ss_pred HHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCcc-ccccCCCCcHHHHHHhcccCCCCCCEEEEEc-----CCCChh
Q 022234 117 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD-VAFSPSKATGKILASELPKNGKKKCTVLYPA-----SAKASN 190 (300)
Q Consensus 117 ~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~-~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~r-----g~~~~~ 190 (300)
.+.+++....+.+|.+=|+.=.++|+++ |++ ..++-+...--+.++.|.+.. -++|++.. |+....
T Consensus 14 ~~~l~~~~~~~~~ilveg~~d~~~l~~l------gi~g~~i~~s~~p~~~cad~ii~~g--i~rVVi~~D~d~~G~~~~~ 85 (360)
T PRK14719 14 IDDLKLLAEKGIPILVEGPNDILSLKNL------KINANFITVSNTPVFQIADDLIAEN--ISEVILLTDFDRAGRVYAK 85 (360)
T ss_pred HHHHHHhhhCCCEEEEEcchHHHHHHHc------CCCCcEEEEeCCchHHHHHHHHHcC--CCEEEEEECCCCCCCccch
Confidence 3344444445799999999999999999 885 222222222223555554432 25777766 333334
Q ss_pred HHHHHHHhCCCeeE
Q 022234 191 EIEEGLSNRGFEVV 204 (300)
Q Consensus 191 ~L~~~L~~~G~~v~ 204 (300)
.+.+.|+++|+.|.
T Consensus 86 ~~~~~L~~aGi~V~ 99 (360)
T PRK14719 86 NIMEEFQSRGIKVN 99 (360)
T ss_pred HHHHHHHHCCCEEE
Confidence 66889999999994
No 191
>PRK06849 hypothetical protein; Provisional
Probab=62.25 E-value=52 Score=31.06 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=53.6
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeE--------------eeeCC--Cc----hhHHHhhhcCCccEEEE
Q 022234 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQ--------------HAQGP--DT----DRLSSVLNDTIFDWIII 107 (300)
Q Consensus 49 ~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~--------------~~~~~--~~----~~l~~~l~~~~~d~ivF 107 (300)
.+|+||||.... ..-.+++.|.++|++|+.+-.-. ..+.+ +. +.+.++++..+.|.||-
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP 82 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIP 82 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 479999998775 46789999999999998753321 12112 21 22333334567899999
Q ss_pred eChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 108 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 108 TS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
|+... .+.....+...+...+..-+..+.+
T Consensus 83 ~~e~~--~~~a~~~~~l~~~~~v~~~~~~~~~ 112 (389)
T PRK06849 83 TCEEV--FYLSHAKEELSAYCEVLHFDFELLL 112 (389)
T ss_pred CChHH--HhHHhhhhhhcCCcEEEcCCHHHHH
Confidence 88753 3333333322235566666665554
No 192
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=61.39 E-value=1.6e+02 Score=28.35 Aligned_cols=224 Identities=13% Similarity=0.108 Sum_probs=115.4
Q ss_pred CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHH-cCCCCceE-EEEcc-c
Q 022234 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRI-GVVGA-G 136 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~-~~~~~~~i-~aVG~-~ 136 (300)
.+-.++.+.|++.|+++..++.- ....+++. +.++...-+..++..-..+.+.+++ .+.+-+.. +-+|. .
T Consensus 179 ~d~~ei~~lL~~~Gi~v~~~~~~----~~~~~ei~---~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~~~ 251 (426)
T cd01972 179 EDVDEFKRLLNELGLRVNAIIAG----GCSVEELE---RASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGIEA 251 (426)
T ss_pred ccHHHHHHHHHHcCCeEEEEeCC----CCCHHHHH---hcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCCccCHHH
Confidence 34589999999999999866432 11223332 4566666666676555666666654 33332222 22554 5
Q ss_pred hHHHHHHHhhccCCCccccccCCC--CcHHHHHHhccc--CCCCCCEEEEEcCCCChhHHHHHHHhCC-CeeEEEEeeee
Q 022234 137 TASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPK--NGKKKCTVLYPASAKASNEIEEGLSNRG-FEVVRLNTYTT 211 (300)
Q Consensus 137 Ta~~L~~~~~~~~~G~~~~~~p~~--~~~e~L~~~L~~--~~~~~~~vL~~rg~~~~~~L~~~L~~~G-~~v~~~~vY~~ 211 (300)
|.+.|++.. .+-|.... .+.. ..-+.+.+.|.+ ....|+++.+..+....-.+...|.+.| ..|..+.+...
T Consensus 252 T~~~l~~ia--~~~g~~~~-~e~~i~~e~~~~~~~l~~~~~~l~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~ 328 (426)
T cd01972 252 TDKWLREIA--KVLGMEAE-AEAVIEREHERVAPEIEELRKALKGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHH 328 (426)
T ss_pred HHHHHHHHH--HHhCCcHH-HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEeccC
Confidence 666666651 11144211 1110 000112222322 1126889988888887888899999999 88766555322
Q ss_pred eeCCCCcHHHH-HHcC-CC--CEE---EEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecC---C-
Q 022234 212 EPVHHVDQTVL-KQAL-SI--PVV---AVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT---H- 280 (300)
Q Consensus 212 ~~~~~~~~~~~-~~l~-~~--d~I---vftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~---~- 280 (300)
.+..... ... +.+. .. +.. +..+......+.+.+++.. .++.+..-|........+.|+..+-+.. .
T Consensus 329 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-pDl~i~~~~~~~~~~~~~~gip~~~~~~~~~~~ 406 (426)
T cd01972 329 DPTYDRG-DSEKDLLEHGVDPEIDITKYTVSNGQYYQFYNLLKRVK-PDFIIFRHGGLFPDATVYLGIPVVPLNDELNQP 406 (426)
T ss_pred chhhhcc-hhHHHHhcCCcccccccceeeecCCCHHHHHHHHHHhC-CCEEEEcCCCccHHHHHhcCCCEEeccccccCC
Confidence 2222211 111 1222 21 111 2244433333444444331 2444433456565666778997643333 2
Q ss_pred -CCHHHHHHHHHHHHH
Q 022234 281 -PGLEGWVDSILEALR 295 (300)
Q Consensus 281 -p~~~~l~~ai~~~~~ 295 (300)
...++.++.+.+...
T Consensus 407 ~~Gy~G~~~l~~~i~~ 422 (426)
T cd01972 407 QFGYRGLLKIANKIVD 422 (426)
T ss_pred cccHhHHHHHHHHHHH
Confidence 266787777766554
No 193
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=61.38 E-value=64 Score=33.47 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=67.0
Q ss_pred CeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-----HHHHHHHHH
Q 022234 51 PKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-----AGSVFLEAW 120 (300)
Q Consensus 51 ~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-----av~~~~~~l 120 (300)
.+|++..... +..-....|+..|++|+.-..+ . +.+++-+.....+.|.|+++|.. .+..+.+.+
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~--~---s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~L 657 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLF--Q---TPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEAL 657 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCC--C---CHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHH
Confidence 4566554332 3456677888999999533322 1 22333333345789999999866 456777778
Q ss_pred HHcCCCCceEEEEcc---chHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 121 KEAGTPNVRIGVVGA---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 121 ~~~~~~~~~i~aVG~---~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
++.+.+++++++=|. ...+.+++. |++..+.+. -+...+++.+.
T Consensus 658 k~~G~~~v~vl~GG~~~~~~~~~l~~a------GvD~~i~~g-~d~~~~L~~l~ 704 (714)
T PRK09426 658 KKLGREDIMVVVGGVIPPQDYDFLYEA------GVAAIFGPG-TVIADAAIDLL 704 (714)
T ss_pred HhcCCCCcEEEEeCCCChhhHHHHHhC------CCCEEECCC-CCHHHHHHHHH
Confidence 877766777776553 334577888 998655544 35555554443
No 194
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=61.36 E-value=24 Score=29.98 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=21.9
Q ss_pred CCCCeEEEeCCC----------------C-chHHHHHHHHhCCCCEEEee
Q 022234 48 NSNPKVVVTRER----------------G-KNGKLIKALAKHRIDCLELP 80 (300)
Q Consensus 48 l~g~~VlitR~~----------------~-~~~~l~~~L~~~G~~v~~~P 80 (300)
|.|++||||-.. + ....+++.+..+|++|..+-
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~ 50 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIH 50 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEe
Confidence 457778877443 2 25689999999999987653
No 195
>PRK08250 glutamine amidotransferase; Provisional
Probab=61.32 E-value=54 Score=28.86 Aligned_cols=91 Identities=15% Similarity=0.063 Sum_probs=52.9
Q ss_pred CeEEEeCCC--CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-HHH------------H
Q 022234 51 PKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-AGS------------V 115 (300)
Q Consensus 51 ~~VlitR~~--~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-av~------------~ 115 (300)
|||++.+.. +....+...++++|+++....+..-.+.+. ...+||.||++-.. .+. .
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~--------~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~ 72 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPE--------NADGFDLLIVMGGPQSPRTTREECPYFDSKA 72 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCC--------CccccCEEEECCCCCChhhccccccccchHH
Confidence 467777654 466788999999998877755443222211 23579999997552 211 1
Q ss_pred HHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCcccc
Q 022234 116 FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 155 (300)
Q Consensus 116 ~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~ 155 (300)
..+.+++.-..+++++.|.-+-.-..+.+ |-++.
T Consensus 73 ~~~~i~~~~~~~~PvlGIC~G~Qlla~al------Gg~V~ 106 (235)
T PRK08250 73 EQRLINQAIKAGKAVIGVCLGAQLIGEAL------GAKYE 106 (235)
T ss_pred HHHHHHHHHHcCCCEEEEChhHHHHHHHh------Cceec
Confidence 11112221113678888777755555555 77664
No 196
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=61.22 E-value=92 Score=30.70 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=45.7
Q ss_pred CeEEEeCCCCchHHHHHHHHhC--CCCEEEeee-----eE-----------eeeCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 51 PKVVVTRERGKNGKLIKALAKH--RIDCLELPL-----IQ-----------HAQGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~--G~~v~~~P~-----i~-----------~~~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
|+||+.....+...++.+|++. |.+++.+|- +. ..+..|.+.+.+.......|.||...-..
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~ 80 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEP 80 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 6899999988889999999988 899988875 21 11112334444444456788887654433
Q ss_pred H-HHHHHHHHHc
Q 022234 113 G-SVFLEAWKEA 123 (300)
Q Consensus 113 v-~~~~~~l~~~ 123 (300)
. ..+.+.+.+.
T Consensus 81 l~~glad~l~~~ 92 (486)
T PRK05784 81 LFAGVADVLREE 92 (486)
T ss_pred HHHHHHHHHHhC
Confidence 2 2344444443
No 197
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=60.91 E-value=46 Score=30.27 Aligned_cols=70 Identities=19% Similarity=0.156 Sum_probs=39.5
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEE
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGV 132 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-av~~~~~~l~~~~~~~~~i~a 132 (300)
...+.+.++++|+++.....+... ..|....-..+...+.|.|++.+.. ....|.+.+.+.+.+...+..
T Consensus 150 ~~~~~~~~~~~G~~v~~~~~~~~~-~~d~~~~~~~i~~~~pdaV~~~~~~~~a~~~~~~~~~~G~~~~~~~~ 220 (341)
T cd06341 150 AALLARSLAAAGVSVAGIVVITAT-APDPTPQAQQAAAAGADAIITVLDAAVCASVLKAVRAAGLTPKVVLS 220 (341)
T ss_pred HHHHHHHHHHcCCccccccccCCC-CCCHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCCCEEEe
Confidence 345667777888877654443322 1233222222223568888887766 666777777777664333333
No 198
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=60.78 E-value=34 Score=32.81 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=28.8
Q ss_pred CCCCCCeEEEeCC----------------CC-chHHHHHHHHhCCCCEEEe
Q 022234 46 ASNSNPKVVVTRE----------------RG-KNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 46 ~~l~g~~VlitR~----------------~~-~~~~l~~~L~~~G~~v~~~ 79 (300)
+++.|++||||.. .+ -...+++.|.++|++|..+
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v 234 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLV 234 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEe
Confidence 6789999999987 34 3789999999999999765
No 199
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=59.50 E-value=18 Score=29.06 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCC-----------CchhHHHhh-hcCCccEEEEeChH-------HHHHHHHHHH--
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGP-----------DTDRLSSVL-NDTIFDWIIITSPE-------AGSVFLEAWK-- 121 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~-----------~~~~l~~~l-~~~~~d~ivFTS~~-------av~~~~~~l~-- 121 (300)
+.+.+.+++.|+++..+.+-.. +.+ ..+.+.... .+...|.|||-||. .++.|++.+.
T Consensus 21 ~~~~~~l~~~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~ 99 (152)
T PF03358_consen 21 EAVAEQLEEAGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCW 99 (152)
T ss_dssp HHHHHHHHHTTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHT
T ss_pred HHHHHHHHHcCCEEEEEecccc-chhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccc
Confidence 4556666777888877766654 111 112333333 45789999999974 6788888886
Q ss_pred -HcCCCCceEEEE
Q 022234 122 -EAGTPNVRIGVV 133 (300)
Q Consensus 122 -~~~~~~~~i~aV 133 (300)
...+.+.+++.+
T Consensus 100 ~~~~~~~K~~~~i 112 (152)
T PF03358_consen 100 FRRALRGKPVAII 112 (152)
T ss_dssp HTTTTTTSEEEEE
T ss_pred cccccCCCEEEEE
Confidence 333445555555
No 200
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=59.35 E-value=72 Score=26.58 Aligned_cols=86 Identities=10% Similarity=0.091 Sum_probs=46.4
Q ss_pred EEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH-H--------HHHHHHHHHc
Q 022234 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA-G--------SVFLEAWKEA 123 (300)
Q Consensus 53 VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a-v--------~~~~~~l~~~ 123 (300)
|+.++..+....+.+.|++.|...+.+.++....... ...+..+|.||++.... + +.+.+.++..
T Consensus 4 il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~------~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~ 77 (188)
T cd01741 4 ILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGEL------LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQA 77 (188)
T ss_pred EEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCC------CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHH
Confidence 3444555446889999999995223333333222111 01356899999997643 1 1222222222
Q ss_pred CCCCceEEEEccchHHHHHHH
Q 022234 124 GTPNVRIGVVGAGTASIFEEV 144 (300)
Q Consensus 124 ~~~~~~i~aVG~~Ta~~L~~~ 144 (300)
...+.+++.|.-+-.-....+
T Consensus 78 ~~~~~pilgiC~G~q~l~~~l 98 (188)
T cd01741 78 LAAGKPVLGICLGHQLLARAL 98 (188)
T ss_pred HHCCCCEEEECccHHHHHHHh
Confidence 123577877777764444444
No 201
>PRK07308 flavodoxin; Validated
Probab=58.93 E-value=37 Score=27.15 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=43.0
Q ss_pred eEEEeCCCCchHHH----HHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH--------HHHHHHHH
Q 022234 52 KVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE--------AGSVFLEA 119 (300)
Q Consensus 52 ~VlitR~~~~~~~l----~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~--------av~~~~~~ 119 (300)
+|+.....+..+++ ++.|++.|..+...++-.. +.. .+..+|.|+|-|+. .+..|++.
T Consensus 5 ~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~----~~~------~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~ 74 (146)
T PRK07308 5 KIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTV----DAS------DFEDADIAIVATYTYGDGELPDEIVDFYED 74 (146)
T ss_pred EEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccC----CHh------HhccCCEEEEEeCccCCCCCCHHHHHHHHH
Confidence 45555554444444 4556667876654333211 111 24578888887754 35666666
Q ss_pred HHHcCCCCceEEEEccc
Q 022234 120 WKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 120 l~~~~~~~~~i~aVG~~ 136 (300)
+......+.+++++|-.
T Consensus 75 l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 75 LADLDLSGKIYGVVGSG 91 (146)
T ss_pred HhcCCCCCCEEEEEeeC
Confidence 66555567778777773
No 202
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=58.89 E-value=42 Score=32.97 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=27.8
Q ss_pred CCCCCCeEEEeCCCC-----------------chHHHHHHHHhCCCCEEEee
Q 022234 46 ASNSNPKVVVTRERG-----------------KNGKLIKALAKHRIDCLELP 80 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-----------------~~~~l~~~L~~~G~~v~~~P 80 (300)
++|.|++||||-... ..-.+++.+..+|++|..+-
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~ 303 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLIS 303 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEe
Confidence 579999999996532 25688999999999997653
No 203
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=58.64 E-value=1.2e+02 Score=29.01 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=86.3
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceE
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRI 130 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i 130 (300)
|+|++...-+ ...+.+++.| ++...|--.+ .. + .+.++|.++..|..-+.. +.+. . .++|+
T Consensus 1 mkI~~d~~~p---~~~~~~~~~~-~v~~~~~~~~-----~~---~--~l~daD~liv~~~t~v~~--~ll~-~--~~Lk~ 61 (381)
T PRK00257 1 MKIVADENIP---LLDAFFAGFG-EIRRLPGRAF-----DR---A--AVRDADVLLVRSVTRVDR--ALLE-G--SRVRF 61 (381)
T ss_pred CEEEEecCch---hHHHHHhhCC-cEEEcCCccc-----CH---H--HhCCceEEEEeCCCCCCH--HHhc-C--CCCeE
Confidence 5788777654 2344555444 5555442111 01 1 246789888776533322 1121 1 24554
Q ss_pred EE---Eccc--hHHHHHHHhhccCCCccccccCCCCcHHHHHHh-------cccC---CCCCCEEEEEcCCCChhHHHHH
Q 022234 131 GV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPKN---GKKKCTVLYPASAKASNEIEEG 195 (300)
Q Consensus 131 ~a---VG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L~~~---~~~~~~vL~~rg~~~~~~L~~~ 195 (300)
++ +|-. -.+++++. |+.+...|. .++..+++. +.+. ...|+++.+++-..-...+...
T Consensus 62 I~~~~~G~D~iD~~~~~~~------gI~v~napg-~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~ 134 (381)
T PRK00257 62 VGTCTIGTDHLDLDYFAEA------GITWSSAPG-CNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRV 134 (381)
T ss_pred EEECCccccccCHHHHHHC------CCEEEECCC-cChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHH
Confidence 43 3422 13567787 998866654 344444433 1121 2367899998766555678889
Q ss_pred HHhCCCeeEEEEeeeeeeCC-CCcHHHHHHcCCCCEEEEEChHHH
Q 022234 196 LSNRGFEVVRLNTYTTEPVH-HVDQTVLKQALSIPVVAVASPSAV 239 (300)
Q Consensus 196 L~~~G~~v~~~~vY~~~~~~-~~~~~~~~~l~~~d~IvftS~s~v 239 (300)
|+..|++|..+.-+...... .....+-+.+...|+|++.-|.+-
T Consensus 135 l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~ 179 (381)
T PRK00257 135 LRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTK 179 (381)
T ss_pred HHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCC
Confidence 99999877443322211100 001112222357899998888653
No 204
>PRK06490 glutamine amidotransferase; Provisional
Probab=57.71 E-value=77 Score=27.98 Aligned_cols=93 Identities=11% Similarity=-0.060 Sum_probs=54.4
Q ss_pred CCeEEEeCCC--CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH--------HHHHHHH
Q 022234 50 NPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA--------GSVFLEA 119 (300)
Q Consensus 50 g~~VlitR~~--~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a--------v~~~~~~ 119 (300)
.++|++.+.. +....+.+.|++.|.++..+....-.+.++ .+.+||.+|+|-... +....+.
T Consensus 7 ~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~--------~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~ 78 (239)
T PRK06490 7 KRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPD--------TLEDHAGAVIFGGPMSANDPDDFIRREIDW 78 (239)
T ss_pred CceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCC--------cccccCEEEEECCCCCCCCCchHHHHHHHH
Confidence 5788888664 356789999999999887654432222221 245689888884332 2222222
Q ss_pred HHHcCCCCceEEEEccchHHHHHHHhhccCCCccccc
Q 022234 120 WKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF 156 (300)
Q Consensus 120 l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~ 156 (300)
+.+....+++++.|.-.-.-..+.+ |-++.-
T Consensus 79 i~~~~~~~~PvLGIC~G~Qlla~al------GG~V~~ 109 (239)
T PRK06490 79 ISVPLKENKPFLGICLGAQMLARHL------GARVAP 109 (239)
T ss_pred HHHHHHCCCCEEEECHhHHHHHHHc------CCEeec
Confidence 2221123577877777754555555 776643
No 205
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=57.65 E-value=1.9e+02 Score=28.10 Aligned_cols=217 Identities=14% Similarity=0.108 Sum_probs=104.1
Q ss_pred CchHHHHHHHHhCCCCEEE-eeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEc-cc
Q 022234 60 GKNGKLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 136 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~-~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~~~i~aVG-~~ 136 (300)
.+..++.+.|++.|+++.. +|-- ...+++. ...+...-+..++.....+.+.|++. +.+-....-+| ..
T Consensus 210 ~d~~el~~lL~~~Gl~v~~~~~~~-----~s~eei~---~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~G~~~ 281 (456)
T TIGR01283 210 GEFWHVKPLLEKLGIRVLATITGD-----SRYAEVQ---TAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFYGIED 281 (456)
T ss_pred ccHHHHHHHHHHcCCeEEEEeCCC-----CcHHHHH---hcccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCCcHHH
Confidence 3456999999999999986 2211 1223332 34555665555655556666667543 43211111255 34
Q ss_pred hHHHHHHHhhccCCCccc--cccCCC--CcHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee
Q 022234 137 TASIFEEVIQSSKCSLDV--AFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 137 Ta~~L~~~~~~~~~G~~~--~~~p~~--~~~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
|.+.|++.. .+-|... ...+.. ..-+.+.+.|... ...|+++.+..+....-.+...|.+.|++|..+.++.
T Consensus 282 T~~~L~~Ia--~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~ 359 (456)
T TIGR01283 282 TSKALRDIA--DLFGDEELLKRTEELIAREEAKIRPALEPYRERLKGKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQK 359 (456)
T ss_pred HHHHHHHHH--HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeec
Confidence 777777661 1113110 001100 0011122233221 1267888876665555568889999999986554332
Q ss_pred eeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeC-HHHHHHHHHcCCCeEEec-----CCCCHH
Q 022234 211 TEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIG-ETTASAAKRLGLKNVYYP-----THPGLE 284 (300)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG-~~Ta~~l~~~G~~~~~v~-----~~p~~~ 284 (300)
. ..++.+ .+.....-+.+++..+. ...+.+.+.+. +..+ .|| ......+.+.|+..+.+. .....+
T Consensus 360 ~--~~~d~~-~l~~~~~~~~~v~~~~d-~~e~~~~i~~~---~pDl-~ig~~~~~~~a~k~giP~i~~~~~~~~p~~Gy~ 431 (456)
T TIGR01283 360 G--TEEDYA-RIRELMGEGTVMLDDAN-PRELLKLLLEY---KADL-LIAGGKERYTALKLGIPFCDINHEREHPYAGYD 431 (456)
T ss_pred C--CHHHHH-HHHHHcCCCeEEEeCCC-HHHHHHHHhhc---CCCE-EEEccchHHHHHhcCCCEEEcccccCCCCcchh
Confidence 1 111111 22222233455555432 22233333322 1223 344 444455567888753322 112456
Q ss_pred HHHHHHHHHH
Q 022234 285 GWVDSILEAL 294 (300)
Q Consensus 285 ~l~~ai~~~~ 294 (300)
+.+..+.+..
T Consensus 432 G~~~l~~~i~ 441 (456)
T TIGR01283 432 GMVEFAREVD 441 (456)
T ss_pred hHHHHHHHHH
Confidence 6555555443
No 206
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=57.50 E-value=1.1e+02 Score=25.40 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=56.7
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHH---HHHc--CCCCE-EEEEC
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTV---LKQA--LSIPV-VAVAS 235 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~---~~~l--~~~d~-IvftS 235 (300)
+-+.+.+.+.....-..+-.|... -..+.+.+.|...|+++. |..- ..+..-. .+.+ .++|+ ++++|
T Consensus 42 d~~~i~~~ls~~G~i~~~R~Y~~a-~a~~~l~~~l~~~Gf~pv----~~kG--~~Dv~laIDame~~~~~~iD~~vLvSg 114 (160)
T TIGR00288 42 DLDEIREILSEYGDIKIGKVLLNQ-YASDKLIEAVVNQGFEPI----IVAG--DVDVRMAVEAMELIYNPNIDAVALVTR 114 (160)
T ss_pred CHHHHHHHHHhcCCeEEEEEEech-hccHHHHHHHHHCCceEE----EecC--cccHHHHHHHHHHhccCCCCEEEEEec
Confidence 345666666654321123334332 234568899999998854 2221 2222222 2223 57886 55555
Q ss_pred hHHHHHHHHHhcccCCCCceEEEeC-H-HHHHHHHHcC
Q 022234 236 PSAVRSWVNLISDTEQWSNSVACIG-E-TTASAAKRLG 271 (300)
Q Consensus 236 ~s~v~~~~~~~~~~~~~~~~vv~IG-~-~Ta~~l~~~G 271 (300)
=+-+..++..+++. +..++++| + .|++.+++.-
T Consensus 115 D~DF~~Lv~~lre~---G~~V~v~g~~~~ts~~L~~ac 149 (160)
T TIGR00288 115 DADFLPVINKAKEN---GKETIVIGAEPGFSTALQNSA 149 (160)
T ss_pred cHhHHHHHHHHHHC---CCEEEEEeCCCCChHHHHHhc
Confidence 56677777777653 67788887 3 4777777754
No 207
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=57.39 E-value=1.3e+02 Score=27.30 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=35.9
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeC------H--HHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIG------E--TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG------~--~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
...|+++..|. -..+++.+. .+++++++. . ..++.+.+.|.-..+.+...+.++|.++|.+.+..+
T Consensus 249 ~~ad~~v~~~g--~~~l~Ea~~----~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 249 AAADLVISRAG--ASTVAELAA----AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDP 322 (348)
T ss_pred HhCCEEEECCC--hhHHHHHHH----cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCH
Confidence 45676665543 223334332 256666642 1 134556665443333233347999999999877543
No 208
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=56.90 E-value=88 Score=31.22 Aligned_cols=114 Identities=11% Similarity=0.162 Sum_probs=69.9
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeE------------eeeC--CCchhHHHhhhcCCccEEEEeChHHHHH-
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQG--PDTDRLSSVLNDTIFDWIIITSPEAGSV- 115 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~------------~~~~--~~~~~l~~~l~~~~~d~ivFTS~~av~~- 115 (300)
-+|+|..-..-...+++.|+++|.+++.+.-=+ .... .+.+.++ .....+.|.++.+..+..+.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~-~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQ-LAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHH-hcCccccCEEEEEcCChHHHH
Confidence 457888777777899999999998876553211 0000 0111111 12356889888886664433
Q ss_pred -HHHHHHHcCCCCceEEEEc--cchHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 116 -FLEAWKEAGTPNVRIGVVG--AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 116 -~~~~l~~~~~~~~~i~aVG--~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
.....++.. ++.++++.- +...+.+++. |.+..+.|+...++.+.+.+..
T Consensus 497 ~iv~~~~~~~-~~~~iiar~~~~~~~~~l~~~------Gad~vv~p~~~~a~~i~~~l~~ 549 (558)
T PRK10669 497 EIVASAREKR-PDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELLET 549 (558)
T ss_pred HHHHHHHHHC-CCCeEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhcC
Confidence 333334333 456677654 3444567777 9998888887778888777654
No 209
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=56.80 E-value=20 Score=27.95 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=33.6
Q ss_pred EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccCC
Q 022234 258 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 299 (300)
Q Consensus 258 ~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~~ 299 (300)
-||+.....+++.|++++......+.++.++.+.+.+....|
T Consensus 71 ~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~~~ 112 (119)
T TIGR02663 71 AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKGNPP 112 (119)
T ss_pred hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcCCCC
Confidence 499999999999999985445555899999999988854433
No 210
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=56.50 E-value=24 Score=28.01 Aligned_cols=83 Identities=11% Similarity=0.170 Sum_probs=54.1
Q ss_pred CEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHH---HHHcCCCCEEEEEChHHHHHHHHHhc
Q 022234 178 CTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTV---LKQALSIPVVAVASPSAVRSWVNLIS 247 (300)
Q Consensus 178 ~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~---~~~l~~~d~IvftS~s~v~~~~~~~~ 247 (300)
++++++.+.... .-+.+.+++.|..+....+............. ++.. .+|+|+..+...+-.++..+.
T Consensus 10 r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~pdaii~~~~~~a~~~~~~l~ 88 (160)
T PF13377_consen 10 RRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL-RPDAIICSNDRLALGVLRALR 88 (160)
T ss_dssp SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC-SSSEEEESSHHHHHHHHHHHH
T ss_pred CeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC-CCcEEEEcCHHHHHHHHHHHH
Confidence 578888755432 23667888999886655544432111111111 1212 679999999999999999888
Q ss_pred ccCC---CCceEEEeCH
Q 022234 248 DTEQ---WSNSVACIGE 261 (300)
Q Consensus 248 ~~~~---~~~~vv~IG~ 261 (300)
+.+. .++.+++++.
T Consensus 89 ~~g~~vP~di~vv~~~~ 105 (160)
T PF13377_consen 89 ELGIRVPQDISVVSFDD 105 (160)
T ss_dssp HTTSCTTTTSEEEEESS
T ss_pred HcCCcccccccEEEecC
Confidence 7663 5889999985
No 211
>PRK09271 flavodoxin; Provisional
Probab=55.93 E-value=57 Score=26.66 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=37.0
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH--------HHHHHHHHHHHcCCCCceEEEE
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVV 133 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~--------av~~~~~~l~~~~~~~~~i~aV 133 (300)
++.+++.|++.|+++....+ ... +...+ .....++|.|+|-|+. .+..|++.+......+.+++++
T Consensus 18 A~~ia~~l~~~g~~v~~~~~---~~~-~~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avf 91 (160)
T PRK09271 18 AREIEERCEEAGHEVDWVET---DVQ-TLAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVF 91 (160)
T ss_pred HHHHHHHHHhCCCeeEEEec---ccc-ccccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEE
Confidence 44556666777887642221 111 10100 1134578999998842 4777887776543334456666
Q ss_pred cc
Q 022234 134 GA 135 (300)
Q Consensus 134 G~ 135 (300)
|.
T Consensus 92 gs 93 (160)
T PRK09271 92 GT 93 (160)
T ss_pred ec
Confidence 55
No 212
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.77 E-value=82 Score=23.35 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=33.2
Q ss_pred eEEEeCC-CCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 52 KVVVTRE-RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 52 ~VlitR~-~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
+||+... ......+.+.++++|++.+.. -..-...+....+.. .....|.||+..-
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~~~~~~~~~l~~--~i~~aD~VIv~t~ 57 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH-GRDGGDEKKASRLPS--KIKKADLVIVFTD 57 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCCCCccchhHHHH--hcCCCCEEEEEeC
Confidence 3666655 345689999999999999988 111111111111332 3567888876543
No 213
>PRK15452 putative protease; Provisional
Probab=55.72 E-value=2e+02 Score=27.98 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=48.9
Q ss_pred CCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHH
Q 022234 227 SIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 290 (300)
Q Consensus 227 ~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai 290 (300)
++|+|++.++..+..+.+....... .+..+-+.-..+++.+.++|+..++.+.+-+.+.|-+..
T Consensus 89 gvDgvIV~d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~ 153 (443)
T PRK15452 89 KPDALIMSDPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIR 153 (443)
T ss_pred CCCEEEEcCHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHH
Confidence 6899999999998877765432211 244455677889999999999988889888988877554
No 214
>PRK05569 flavodoxin; Provisional
Probab=55.70 E-value=36 Score=26.88 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=25.6
Q ss_pred cCCccEEEEeChH---------HHHHHHHHHHHcCCCCceEEEEcc
Q 022234 99 DTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 99 ~~~~d~ivFTS~~---------av~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
..++|.|+|-||. .+..|++.+......+.+++.+|.
T Consensus 46 ~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t 91 (141)
T PRK05569 46 VLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGS 91 (141)
T ss_pred HhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeC
Confidence 4589999999984 256666666544445778888873
No 215
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=55.21 E-value=36 Score=31.08 Aligned_cols=62 Identities=23% Similarity=0.150 Sum_probs=44.3
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
-.+|.||+|.++++.. ..--+...|++.|.....+.++.+.+ ......+..+..|..+..=+
T Consensus 131 ~adlkGk~vg~~~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~----~~~~~al~~g~vda~~~~ep 193 (335)
T COG0715 131 VADLKGKKVGVPFGGSTSDFLLRYALAKAGLDPDDVELVNLPP----ADAVAALAAGQVDAFVVWEP 193 (335)
T ss_pred ccCCCCceEEEeCCCchHHHHHHHHHHHcCCCcccceEEeeCc----HHHHHHHhcCCcceEEecCC
Confidence 5889999999999986 78899999999999998887444332 12333444566776443333
No 216
>PRK07825 short chain dehydrogenase; Provisional
Probab=55.19 E-value=1.5e+02 Score=26.02 Aligned_cols=80 Identities=18% Similarity=0.053 Sum_probs=46.9
Q ss_pred CCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEE--EeChHHHHHHHHHHHHc
Q 022234 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWII--ITSPEAGSVFLEAWKEA 123 (300)
Q Consensus 48 l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~iv--FTS~~av~~~~~~l~~~ 123 (300)
+.|++||||..... ...+++.|.++|+.++..- . +.+.+.... ......++. +++..+++.+++.+.+.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~------r-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGD------L-DEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEE------C-CHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHH
Confidence 56899999987653 4688889999999865431 1 112222211 112233322 47888888888877654
Q ss_pred -CCCCceEEEEc
Q 022234 124 -GTPNVRIGVVG 134 (300)
Q Consensus 124 -~~~~~~i~aVG 134 (300)
+.-+.-|.+.|
T Consensus 76 ~~~id~li~~ag 87 (273)
T PRK07825 76 LGPIDVLVNNAG 87 (273)
T ss_pred cCCCCEEEECCC
Confidence 22244455555
No 217
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=54.70 E-value=20 Score=33.30 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=47.2
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHH
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGS 114 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~ 114 (300)
.+|.||+|.+++.....--+.+.|++.|...-.+-++...+ .+....+..+..|+.+...|...+
T Consensus 102 aDLKGKkIav~~gs~~~~ll~~aL~~aGL~~~DV~~v~~~~----~d~~aAl~~G~VDAa~~~eP~~s~ 166 (328)
T TIGR03427 102 ADLKGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSD----ADIVAAFITKDVTAVVTWNPQLSE 166 (328)
T ss_pred HHcCCCEEeccCCChHHHHHHHHHHHcCCCHHHeEEEeCCh----HHHHHHHhcCCCcEEEEcCchHHH
Confidence 67999999999887767788899999999864444333322 233455667889999887777554
No 218
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=54.56 E-value=2e+02 Score=27.43 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=104.8
Q ss_pred CCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEc-cc
Q 022234 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 136 (300)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~~~i~aVG-~~ 136 (300)
..+..++.+.|++.|+++..+- ......+++. +..+...-+..++..-..+.+.|++. +.+-....-+| ..
T Consensus 170 ~~d~~el~~lL~~~Gl~v~~~~----~~~~s~eei~---~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~~~~p~G~~~ 242 (410)
T cd01968 170 AGELWGVKPLLEKLGIRVLASI----TGDSRVDEIR---RAHRAKLNVVQCSKSMIYLARKMEEKYGIPYIEVSFYGIRD 242 (410)
T ss_pred cccHHHHHHHHHHcCCeEEEEe----CCCCCHHHHH---hhhhCcEEEEEchhHHHHHHHHHHHHhCCCeEecCcCcHHH
Confidence 3456799999999999987631 1111223332 34455555544544444456666543 33211111144 35
Q ss_pred hHHHHHHHhhccCCCccc--cccCCC--CcHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee
Q 022234 137 TASIFEEVIQSSKCSLDV--AFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 137 Ta~~L~~~~~~~~~G~~~--~~~p~~--~~~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
|.+.|++.. .+-|... +..+.. ..-..+.+.|... ...|+++.+..+....-.+.+.|.+.|++|..+.++.
T Consensus 243 t~~~l~~ia--~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~elGm~v~~~~~~~ 320 (410)
T cd01968 243 TSKSLRNIA--ELLGDEELIERTEELIAREEARLRPELAPYRARLEGKKAALYTGGVKSWSLVSALQDLGMEVVATGTQK 320 (410)
T ss_pred HHHHHHHHH--HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEeccc
Confidence 666666651 1114321 001110 0011122333221 1267899887776667788899999999987665433
Q ss_pred eeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecC-----CCCHHH
Q 022234 211 TEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT-----HPGLEG 285 (300)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~-----~p~~~~ 285 (300)
..+ .....+...+ +.+.++.......+ +.+.+... +.-++.-+..-...+++.|+..+.+.. ....++
T Consensus 321 ~~~--~~~~~~~~~~-~~~~~v~~~~~~~e-~~~~i~~~---~pDl~ig~s~~~~~a~~~gip~~~~~~~~~~~~~Gy~G 393 (410)
T cd01968 321 GTK--EDYERIKELL-GEGTVIVDDANPRE-LKKLLKEK---KADLLVAGGKERYLALKLGIPFCDINHERKHPYAGYEG 393 (410)
T ss_pred CCH--HHHHHHHHHh-CCCcEEEeCCCHHH-HHHHHhhc---CCCEEEECCcchhhHHhcCCCEEEccccccCCccchhh
Confidence 211 1111222222 34555655543333 22322221 223333333334566667876432211 124556
Q ss_pred HHHHHHHHH
Q 022234 286 WVDSILEAL 294 (300)
Q Consensus 286 l~~ai~~~~ 294 (300)
.+..+.+..
T Consensus 394 ~~~l~~~i~ 402 (410)
T cd01968 394 MLNFAKEVD 402 (410)
T ss_pred HHHHHHHHH
Confidence 555555444
No 219
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=54.50 E-value=39 Score=30.40 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=42.7
Q ss_pred cCCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
.-.+|.||+|.+++.......+...|++.|.....+.+.. .+. .+....+..+..|+++...+..
T Consensus 94 s~~DLkGK~Igv~~~s~~~~~l~~~L~~~Gl~~~dv~~v~---~~~-~~~~~al~~G~vDa~~~~~p~~ 158 (300)
T TIGR01729 94 KPEDLKGKNVAVPFVSTTHYSLLAALKHWKTDPREVNILN---LKP-PQIVAAWQRGDIDAAYVWPPAL 158 (300)
T ss_pred ChhHcCCCEEEeCCCCcHHHHHHHHHHHcCCChhheEEEe---cCc-HHHHHHHHcCCcCEEEEecHHH
Confidence 3457999999998766555567788999998765443322 221 2233445568899888877643
No 220
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=54.46 E-value=68 Score=27.26 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeC------CCchhHHHhh-hcCCccEEEEeCh-------HHHHHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQG------PDTDRLSSVL-NDTIFDWIIITSP-------EAGSVFLEAW 120 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~------~~~~~l~~~l-~~~~~d~ivFTS~-------~av~~~~~~l 120 (300)
...+.+.+.|+++..+.+....+. ...+.+.+.. .....|.|||-|| -..+.|++.+
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l 92 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLDLL 92 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHhC
Confidence 444556668999987776643221 0012333333 3578999999998 3556666654
No 221
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.20 E-value=1.5e+02 Score=25.98 Aligned_cols=143 Identities=13% Similarity=0.071 Sum_probs=70.7
Q ss_pred CeEEEeCCCC--chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEE----EeChHHHHHH--------
Q 022234 51 PKVVVTRERG--KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWII----ITSPEAGSVF-------- 116 (300)
Q Consensus 51 ~~VlitR~~~--~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~iv----FTS~~av~~~-------- 116 (300)
+-|.|.|..+ +..++++.|-+.|+.++++++-.....+....+.+.+.....+.+| .+++..++..
T Consensus 16 ~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 16 GMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI 95 (222)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE
Confidence 4455666654 5678899999999999999884322211111121111111112221 3444444443
Q ss_pred ---------HHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCC
Q 022234 117 ---------LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK 187 (300)
Q Consensus 117 ---------~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~ 187 (300)
.+.+.+.+ ..+.-|-.|-..+.+.+.+|+.-++ +.|....+-..++.|..-. ++ --+++.|..
T Consensus 96 VsP~~~~~v~~~~~~~~----i~~iPG~~TpsEi~~A~~~Ga~~vK--lFPA~~~G~~~ikal~~p~-p~-i~~~ptGGV 167 (222)
T PRK07114 96 VTPLFNPDIAKVCNRRK----VPYSPGCGSLSEIGYAEELGCEIVK--LFPGSVYGPGFVKAIKGPM-PW-TKIMPTGGV 167 (222)
T ss_pred ECCCCCHHHHHHHHHcC----CCEeCCCCCHHHHHHHHHCCCCEEE--ECcccccCHHHHHHHhccC-CC-CeEEeCCCC
Confidence 33333322 2355566666655555444443333 3454433344444554333 22 334455544
Q ss_pred Ch--hHHHHHHHhCCCe
Q 022234 188 AS--NEIEEGLSNRGFE 202 (300)
Q Consensus 188 ~~--~~L~~~L~~~G~~ 202 (300)
.. +++.+.|+ .|+.
T Consensus 168 ~~~~~n~~~yl~-aGa~ 183 (222)
T PRK07114 168 EPTEENLKKWFG-AGVT 183 (222)
T ss_pred CcchhcHHHHHh-CCCE
Confidence 43 67888777 5533
No 222
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=53.98 E-value=2.1e+02 Score=27.51 Aligned_cols=215 Identities=9% Similarity=0.022 Sum_probs=112.3
Q ss_pred CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEE---EEcc-
Q 022234 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG---VVGA- 135 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~---aVG~- 135 (300)
.+..++.+.|++.|+++.... ......+++. +.++..+-+..++.+...+.+.+++.. +++.+ -+|.
T Consensus 185 ~d~~el~~lL~~~Gi~v~~~~----~~~~t~eei~---~~~~A~lniv~~~~~~~~~a~~Le~~f--GiP~~~~~p~Gi~ 255 (421)
T cd01976 185 GDAWASRILLEEMGLRVVAQW----SGDGTLNEME---NAHKAKLNLIHCYRSMNYIARMMEEKY--GIPWMEYNFFGPT 255 (421)
T ss_pred ccHHHHHHHHHHcCCeEEEEe----CCCCCHHHHH---hcccCCEEEEECcHHHHHHHHHHHHHh--CCcEEecccCCHH
Confidence 456789999999999998322 1111223332 355666666666666556666665531 23333 2453
Q ss_pred chHHHHHHHhhccCCCccccccCCC------CcHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 022234 136 GTASIFEEVIQSSKCSLDVAFSPSK------ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 136 ~Ta~~L~~~~~~~~~G~~~~~~p~~------~~~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 207 (300)
.|.+.|++.. .+-|.. +|.. ..-+.+.+.+.+. ...|+|+.+..|......+...|++.|.+|...-
T Consensus 256 ~t~~~l~~ia--~~~g~~---~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g 330 (421)
T cd01976 256 KIAESLRKIA--AYFDDE---ITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTG 330 (421)
T ss_pred HHHHHHHHHH--HHhCch---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEE
Confidence 4666666551 111332 1211 0011233333321 2368999988776666777889999999987644
Q ss_pred eeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEec-CC---C--
Q 022234 208 TYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYP-TH---P-- 281 (300)
Q Consensus 208 vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~-~~---p-- 281 (300)
++... ....++....+ ..+.++...+ ....+.+.+.+. +.-++.-|..-...+++.|+..+.+. .+ |
T Consensus 331 ~~~~~--~~~~~~~~~~~-~~~~~i~~~~-d~~e~~~~i~~~---~pDliig~~~~~~~a~k~giP~~~~~~~~~~~~~~ 403 (421)
T cd01976 331 YEFAH--RDDYERTEVIP-KEGTLLYDDV-THYELEEFVKRL---KPDLIGSGIKEKYVFQKMGIPFRQMHSWDYSGPYH 403 (421)
T ss_pred eecCC--HHHHhhHHhhc-CCceEEEcCC-CHHHHHHHHHHh---CCCEEEecCcchhhhhhcCCCeEeCCccccCCCcc
Confidence 43211 11111222222 2244444432 333344444432 34455555566667777888754322 22 3
Q ss_pred CHHHHHHHHHHHHH
Q 022234 282 GLEGWVDSILEALR 295 (300)
Q Consensus 282 ~~~~l~~ai~~~~~ 295 (300)
..++.++.+.+...
T Consensus 404 Gy~G~~~~~~~i~~ 417 (421)
T cd01976 404 GFDGFAIFARDMDM 417 (421)
T ss_pred chhhHHHHHHHHHH
Confidence 56777776665543
No 223
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=53.95 E-value=2.3e+02 Score=27.88 Aligned_cols=95 Identities=12% Similarity=0.225 Sum_probs=53.8
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChH-------HHHHHHHHhcccCCCCceEEEeC-
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSWVNLISDTEQWSNSVACIG- 260 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s-------~v~~~~~~~~~~~~~~~~vv~IG- 260 (300)
.+.+.+.|++.|..+ ++.+|... .....++...+.+.|+|+|-||. .+..|+..+....+.+.++.++|
T Consensus 269 A~~ia~gl~~~g~gv-~v~~~~v~--~~~~~~i~~~~~~ad~vilGspT~~~~~~p~~~~fl~~l~~~~l~gK~~~vFGS 345 (479)
T PRK05452 269 ADAIAQGIAEVDPRV-AVKIFNVA--RSDKNEILTNVFRSKGVLVGSSTMNNVMMPKIAGLLEEITGLRFRNKRASAFGS 345 (479)
T ss_pred HHHHHHHHHhhCCCc-eEEEEECC--CCCHHHHHhHHhhCCEEEEECCccCCcchHHHHHHHHHhhccCcCCCEEEEEEC
Confidence 445666777654322 44555542 22233444444578999999976 34556555554434455666655
Q ss_pred --------HHHHHHHHHcCCCe---EEecCCCCHHHH
Q 022234 261 --------ETTASAAKRLGLKN---VYYPTHPGLEGW 286 (300)
Q Consensus 261 --------~~Ta~~l~~~G~~~---~~v~~~p~~~~l 286 (300)
+...+.+++.|+++ +.+-..|+.+.+
T Consensus 346 ygw~g~a~~~~~~~l~~~g~~~~~~l~~~~~P~ee~~ 382 (479)
T PRK05452 346 HGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDAL 382 (479)
T ss_pred CCcCcHHHHHHHHHHHHCCCEEeccEEEEecCCHHHH
Confidence 34556677788874 233445665543
No 224
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=53.95 E-value=98 Score=24.51 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=51.6
Q ss_pred CcHHHHHHhcccCCCCCCEEEEEcCC--CChhHHHHHHHhCCCeeEEEEeee--eeeCCCCcH---HHHHHc--CCCCEE
Q 022234 161 ATGKILASELPKNGKKKCTVLYPASA--KASNEIEEGLSNRGFEVVRLNTYT--TEPVHHVDQ---TVLKQA--LSIPVV 231 (300)
Q Consensus 161 ~~~e~L~~~L~~~~~~~~~vL~~rg~--~~~~~L~~~L~~~G~~v~~~~vY~--~~~~~~~~~---~~~~~l--~~~d~I 231 (300)
.+-..|.+.+.........-.|.... .....+.+.|+..|+.+....... ......+.. .+.+.. ..+|.+
T Consensus 24 ~d~~~l~~~~~~~~~~~~~r~y~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~i 103 (149)
T cd06167 24 FDYRKLLEFLRDGGEIVLARAYGNWTSPERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTI 103 (149)
T ss_pred cCHHHHHHHHHhCCeEEEEEEEEecCCchhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEE
Confidence 34456666665431111122333333 246778889999998887766653 111221111 122222 357877
Q ss_pred EEEChHHHHHHHHHhcccCCCCceEEEeCH--HHHHHHHH
Q 022234 232 AVASPSAVRSWVNLISDTEQWSNSVACIGE--TTASAAKR 269 (300)
Q Consensus 232 vftS~s~v~~~~~~~~~~~~~~~~vv~IG~--~Ta~~l~~ 269 (300)
++-|..+ -|...+......+.+++++|+ .++..+++
T Consensus 104 vLvSgD~--Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~ 141 (149)
T cd06167 104 VLVSGDS--DFVPLVERLRELGKRVIVVGFEAKTSRELRK 141 (149)
T ss_pred EEEECCc--cHHHHHHHHHHcCCEEEEEccCccChHHHHH
Confidence 7766654 233333221112445555554 45555544
No 225
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.85 E-value=78 Score=28.81 Aligned_cols=146 Identities=14% Similarity=0.074 Sum_probs=80.1
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh----hcCCccEEEEeChHH--HHH--HHHHHHHc-CCCCceEEEEcc
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL----NDTIFDWIIITSPEA--GSV--FLEAWKEA-GTPNVRIGVVGA 135 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l----~~~~~d~ivFTS~~a--v~~--~~~~l~~~-~~~~~~i~aVG~ 135 (300)
-.+.+++.|++....++-+... .+++.+.+ .+.+++.+..|-|-- +.. +++.+... ..+.+.-.-.|.
T Consensus 54 ~~~~~~~~Gi~~~~~~l~~~~~---~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n~G~ 130 (283)
T PRK14192 54 KGNACRRVGMDSLKVELPQETT---TEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGR 130 (283)
T ss_pred HHHHHHHcCCeEEEEECCCCCC---HHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccccCc
Confidence 4456778899998888732211 12333333 345799999999943 322 33333111 112222222332
Q ss_pred chHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC--CCCCEEEEEcCCC-ChhHHHHHHHhCCCeeEEEEeeeee
Q 022234 136 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 136 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
- + . |- ..+.|. |..++++.|.... ..|++++++.... ...-+...|.+.|+.|+ ++.+.
T Consensus 131 l----~--~------~~-~~~~p~--T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt---v~~~~ 192 (283)
T PRK14192 131 M----A--M------GE-AAYGSA--TPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVT---ICHSR 192 (283)
T ss_pred c----c--c------CC-CcccCC--cHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE---EEeCC
Confidence 1 0 1 21 123333 3477887776543 3788998886554 56667778888887553 33331
Q ss_pred eCCCCcHHHHHHcCCCCEEEEECh
Q 022234 213 PVHHVDQTVLKQALSIPVVAVASP 236 (300)
Q Consensus 213 ~~~~~~~~~~~~l~~~d~IvftS~ 236 (300)
...+.+.+.+.|+|+-+.+
T Consensus 193 -----t~~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 193 -----TQNLPELVKQADIIVGAVG 211 (283)
T ss_pred -----chhHHHHhccCCEEEEccC
Confidence 1123444578899888874
No 226
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=53.78 E-value=2.1e+02 Score=27.51 Aligned_cols=221 Identities=12% Similarity=0.023 Sum_probs=105.5
Q ss_pred CCchHHHHHHHHhCCCCEEEeeeeE------------eeeCCCchhHHHhhhcCCccEEEEeCh--HHHHHHHHHHHHcC
Q 022234 59 RGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNDTIFDWIIITSP--EAGSVFLEAWKEAG 124 (300)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~i~------------~~~~~~~~~l~~~l~~~~~d~ivFTS~--~av~~~~~~l~~~~ 124 (300)
..+..++.+.|++.|+++..+|-+. ..+..+ ..+++.-+..+.+.-|..++ ..-..+.+.+++..
T Consensus 167 ~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g-~~~~~i~~~~~A~lniv~~~~~~~g~~~A~~L~e~~ 245 (429)
T cd03466 167 PADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGG-TPISEIKGMGGAKATIELGMFVDHGLSAGSYLEEEF 245 (429)
T ss_pred hhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCC-CCHHHHHhhccCcEEEEEccCccchHHHHHHHHHHH
Confidence 3457899999999999998877432 111111 12332223445445444443 22333344444321
Q ss_pred CCCceEEE----Ec-cchHHHHHHHhhccCCCccccccCCCCc--HHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHH
Q 022234 125 TPNVRIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEG 195 (300)
Q Consensus 125 ~~~~~i~a----VG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~ 195 (300)
+++++. +| ..|.+.+++.. .+-|..+ |+... -+.+++.+.+. ...|+|+.+..+....-.|.+.
T Consensus 246 --giP~~~~~~P~G~~~t~~~l~~l~--~~~g~~~---~~~i~~~~~~~~~~~~d~~~~l~gkrv~v~g~~~~~~~l~~~ 318 (429)
T cd03466 246 --GIPNYRLPLPIGLRATDEFMSLLS--KLTGKPI---PEKYTRERGRLLDAMIDAHKYNFGRKAAIYGEPDFVVAITRF 318 (429)
T ss_pred --CCCeeecCCCcChHHHHHHHHHHH--HHHCCCc---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHHHHH
Confidence 333322 44 35666666551 1114321 22111 11222222221 1257899888776666778899
Q ss_pred HHhCCCeeEEEEeeeeeeCCCCcHHHHH-HcC--CCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCC
Q 022234 196 LSNRGFEVVRLNTYTTEPVHHVDQTVLK-QAL--SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGL 272 (300)
Q Consensus 196 L~~~G~~v~~~~vY~~~~~~~~~~~~~~-~l~--~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~ 272 (300)
|.+.|..+..+.+ ........+.++ .+. ..+.++...+. ...+.+.+++. +..++.-++.-...+++.|+
T Consensus 319 L~elG~~~~~v~~---~~~~~~~~~~l~~~~~~~~~~~~v~~~~d-~~e~~~~l~~~---~~dliiG~s~~~~~a~~~~i 391 (429)
T cd03466 319 VLENGMVPVLIAT---GSESKKLKEKLEEDLKEYVEKCVILDGAD-FFDIESYAKEL---KIDVLIGNSYGRRIAEKLGI 391 (429)
T ss_pred HHHCCCEEEEEEe---CCCChHHHHHHHHHHHhcCCceEEEeCCC-HHHHHHHHHhc---CCCEEEECchhHHHHHHcCC
Confidence 9999988733222 111111112221 121 34555544332 22333444332 34455555555566667787
Q ss_pred CeEEec------------CCCCHHHHHHHHHHHH
Q 022234 273 KNVYYP------------THPGLEGWVDSILEAL 294 (300)
Q Consensus 273 ~~~~v~------------~~p~~~~l~~ai~~~~ 294 (300)
..+.+. .-...++.+..+.+..
T Consensus 392 p~~~~~~P~~d~~~~~~~~~~Gy~G~~~l~~~i~ 425 (429)
T cd03466 392 PLIRIGFPIHDRLGGQRIRSLGYEGSIELVDRIT 425 (429)
T ss_pred CEEEecCCceeeeccCccCceechhHHHHHHHHH
Confidence 643221 1124566666665544
No 227
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=53.78 E-value=89 Score=26.70 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHH
Q 022234 176 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVN 244 (300)
Q Consensus 176 ~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~ 244 (300)
.+.+++|+.... ..+...+.++..|+++..+...+. ...++..+.+...|+|+|+-.++.+..-.
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~----~~~~~~~~~l~~ad~I~~~GG~~~~~~~~ 97 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT----ANDPDVVARLLEADGIFVGGGNQLRLLSV 97 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC----CCCHHHHHHHhhCCEEEEcCCcHHHHHHH
Confidence 457888875543 245677788999999888877655 22234555577899999999988775543
No 228
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=53.71 E-value=1e+02 Score=23.76 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=49.0
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEeCh----HHHHHHHHHHHHcCCCCceEEEEccc
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIITSP----EAGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFTS~----~av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
..++...|++.|.+++... +.+.....+ ...++++||++-- .....+.+.+...+ .++|+|.++..
T Consensus 6 ~~~l~~~L~~~~~~vv~~~--------~~dd~~~~i~~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~-~~iPVFl~~~~ 76 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDAD--------STDDALAIIESFTDIAAVVISWDGEEEDEAQELLDKIRERN-FGIPVFLLAER 76 (115)
T ss_dssp HHHHHHHHHHTTTEEEEES--------SHHHHHHHHHCTTTEEEEEEECHHHHHHHHHHHHHHHHHHS-TT-EEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEeC--------ChHHHHHHHHhCCCeeEEEEEcccccchhHHHHHHHHHHhC-CCCCEEEEecC
Confidence 3678899999999887643 334444455 4688999999987 66777777777665 48999999986
Q ss_pred h
Q 022234 137 T 137 (300)
Q Consensus 137 T 137 (300)
+
T Consensus 77 ~ 77 (115)
T PF03709_consen 77 D 77 (115)
T ss_dssp C
T ss_pred C
Confidence 5
No 229
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=53.51 E-value=33 Score=31.41 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=43.7
Q ss_pred CCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
-.+|.||+|.++........+...|++.|.+...+ ++...+ ..+....+..+..|+++...+..
T Consensus 117 ~~DLkGK~Iav~~~s~~~~~l~~~L~~~Gl~~~dv---~~v~~~-~~~~~~Al~~G~VDAa~~~~p~~ 180 (320)
T PRK11480 117 PEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQV---EIVNLQ-PPAIIAAWQRGDIDGAYVWAPAV 180 (320)
T ss_pred hHHcCCCEEecCCCCchHHHHHHHHHHcCCCHhhe---EEEECC-cHHHHHHHHcCCcCEEEEcchHH
Confidence 36799999999876554556788899999987543 333332 23344455578899988777654
No 230
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=53.18 E-value=1.2e+02 Score=25.39 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=51.0
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe-ChHH---HHHHHHHHHHcCC
Q 022234 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT-SPEA---GSVFLEAWKEAGT 125 (300)
Q Consensus 51 ~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT-S~~a---v~~~~~~l~~~~~ 125 (300)
|+||+..-.+ -...+.+.|++.|.++..++..... .+ .+..+|.||++ ++.. ...+.+.+++ -.
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~----~~------~l~~~d~iIi~gGp~~~~~~~~~~~~i~~-~~ 70 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLD----LD------EVENFSHILISPGPDVPRAYPQLFAMLER-YH 70 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccC----hh------HhccCCEEEECCCCCChHHhhHHHHHHHH-hc
Confidence 6788887654 4567999999999988887654321 11 13468999988 4432 2222333332 12
Q ss_pred CCceEEEEccchHHHHHHHhhccCCCccc
Q 022234 126 PNVRIGVVGAGTASIFEEVIQSSKCSLDV 154 (300)
Q Consensus 126 ~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 154 (300)
.+.+++.|--.-.-..... |-++
T Consensus 71 ~~~PiLGIClG~Qlla~~~------Gg~V 93 (190)
T PRK06895 71 QHKSILGVCLGHQTLCEFF------GGEL 93 (190)
T ss_pred CCCCEEEEcHHHHHHHHHh------CCeE
Confidence 3567766655543333444 7665
No 231
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=53.12 E-value=22 Score=35.36 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=39.0
Q ss_pred CCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHHH-hCCCCEEEeee
Q 022234 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALA-KHRIDCLELPL 81 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~~~~~l~~~L~-~~G~~v~~~P~ 81 (300)
-+.++.|+... .+...+.|++|.|.-.....-.+++.|. +.|.++...-.
T Consensus 275 ~~~~l~~~~~~----~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~gt 325 (519)
T PRK02910 275 APSRLPWFSRS----VDSTYLTGKRVFVFGDATHAVAAARILSDELGFEVVGAGT 325 (519)
T ss_pred hhhhhhHHHHh----hhhHhhcCCEEEEEcCcHHHHHHHHHHHHhcCCeEEEEec
Confidence 35567888873 3446789999999987777889999998 79999986543
No 232
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=52.80 E-value=2e+02 Score=26.81 Aligned_cols=172 Identities=12% Similarity=0.082 Sum_probs=88.0
Q ss_pred eEEEeCCCC------chHHHHHHHHhCCCCEEEeeeeEeeeCC-Cch---hHHHhhhcCCccEEEEeChHHHHHHHHHHH
Q 022234 52 KVVVTRERG------KNGKLIKALAKHRIDCLELPLIQHAQGP-DTD---RLSSVLNDTIFDWIIITSPEAGSVFLEAWK 121 (300)
Q Consensus 52 ~VlitR~~~------~~~~l~~~L~~~G~~v~~~P~i~~~~~~-~~~---~l~~~l~~~~~d~ivFTS~~av~~~~~~l~ 121 (300)
+|.|+..-+ -.+-..+.|.+.|.. -+.|...... +.. ++.+.+.....|.|+-++.-+.+.+..+..
T Consensus 32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~---n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq~~~s~~~ 108 (322)
T COG2984 32 TVAITQFVEHPALDAAREGVKEALKDAGYK---NVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQALVSATK 108 (322)
T ss_pred eEEEEEeecchhHHHHHHHHHHHHHhcCcc---CeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHHHHHHHhcC
Confidence 466665432 234566788999997 3333333322 222 233334456789999999988888877543
Q ss_pred HcCCCCceEEEEc---cchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEE--cCCCCh----hHH
Q 022234 122 EAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYP--ASAKAS----NEI 192 (300)
Q Consensus 122 ~~~~~~~~i~aVG---~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~--rg~~~~----~~L 192 (300)
+.++.+-| +-.++...++ .-+|-++.-+.+....+.-++.+......-++|-++ .++... +.|
T Consensus 109 -----~iPVV~aavtd~v~a~Lv~~~---~~pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eel 180 (322)
T COG2984 109 -----TIPVVFAAVTDPVGAKLVKSL---EQPGGNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEEL 180 (322)
T ss_pred -----CCCEEEEccCchhhccCCccc---cCCCCceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHH
Confidence 34443332 2233333322 111444433322222333333444333334676333 333232 355
Q ss_pred HHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc-CCCCEEEEEChHH
Q 022234 193 EEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSA 238 (300)
Q Consensus 193 ~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~d~IvftS~s~ 238 (300)
...+++.|++|.+..+=..... +...+.+ ++.|+|.+.--..
T Consensus 181 k~~A~~~Gl~vve~~v~~~ndi----~~a~~~l~g~~d~i~~p~dn~ 223 (322)
T COG2984 181 KKEARKAGLEVVEAAVTSVNDI----PRAVQALLGKVDVIYIPTDNL 223 (322)
T ss_pred HHHHHHCCCEEEEEecCccccc----HHHHHHhcCCCcEEEEecchH
Confidence 6667789988866655333222 2233333 7889877754333
No 233
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=52.69 E-value=1.3e+02 Score=28.82 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=56.9
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChH-------HHHHHHHHhcccCCCCceEEEeC-
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSWVNLISDTEQWSNSVACIG- 260 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s-------~v~~~~~~~~~~~~~~~~vv~IG- 260 (300)
...+.+.|.+.|..|..+.+-.. ...++.+.+.+.+++++.||. .+..++..+......+..+.+.|
T Consensus 264 a~aiaegl~~~gv~v~~~~~~~~-----~~~eI~~~i~~a~~~vvGsPT~~~~~~p~i~~~l~~v~~~~~~~k~~~vfgS 338 (388)
T COG0426 264 AQAIAEGLMKEGVDVEVINLEDA-----DPSEIVEEILDAKGLVVGSPTINGGAHPPIQTALGYVLALAPKNKLAGVFGS 338 (388)
T ss_pred HHHHHHHhhhcCCceEEEEcccC-----CHHHHHHHHhhcceEEEecCcccCCCCchHHHHHHHHHhccCcCceEEEEec
Confidence 56788899999988866655443 344566667788999999996 36666665554433455566655
Q ss_pred --------HHHHHHHHHcCCCe
Q 022234 261 --------ETTASAAKRLGLKN 274 (300)
Q Consensus 261 --------~~Ta~~l~~~G~~~ 274 (300)
....+.++++|++.
T Consensus 339 ~GW~g~av~~i~~~l~~~g~~~ 360 (388)
T COG0426 339 YGWSGEAVDLIEEKLKDLGFEF 360 (388)
T ss_pred cCCCCcchHHHHHHHHhcCcEE
Confidence 57788889988874
No 234
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=52.54 E-value=2.4e+02 Score=27.68 Aligned_cols=202 Identities=14% Similarity=0.124 Sum_probs=105.7
Q ss_pred eEEEeCC--CCchHHHHHHHHhCCCCEEE-eeeeEeeeCCCchhHHHhhhcCCccEEEEeC---hHHHHHHHHHHHHcCC
Q 022234 52 KVVVTRE--RGKNGKLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVLNDTIFDWIIITS---PEAGSVFLEAWKEAGT 125 (300)
Q Consensus 52 ~VlitR~--~~~~~~l~~~L~~~G~~v~~-~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS---~~av~~~~~~l~~~~~ 125 (300)
.|.+... ......+...|++.|++|.. +| ....+++.. .+.-..++.+| ..+.+++.+.++-..
T Consensus 195 ~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~lp------~~~~~eL~~---~~~~~~~c~~~P~ls~aa~~Le~~~gvp~- 264 (457)
T CHL00073 195 PLVLFGSLPSTVASQLTLELKRQGIKVSGWLP------SQRYTDLPS---LGEGVYVCGVNPFLSRTATTLMRRRKCKL- 264 (457)
T ss_pred cEEEEEecCcccHHHHHHHHHHcCCeEeEEeC------CCCHHHHHh---hCcccEEEEcCcchHHHHHHHHHHhCCce-
Confidence 4555543 34567899999999999973 33 112233332 34446666666 355555544333110
Q ss_pred CCceEEEEcc-chHHHHHHHhhccCCCccccccCCCC--cHHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHHHhCC
Q 022234 126 PNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRG 200 (300)
Q Consensus 126 ~~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~--~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G 200 (300)
-..+ +-+|. .|.+.|++.. .+.|.. |+.. .-..+...|.... ..|+|+.+..+..-.-.|...|.+.|
T Consensus 265 ~~~P-~PiGi~~Td~fLr~Ia--~~~G~~----pe~l~~Er~rl~dal~d~~~~L~GKrvai~Gdp~~~i~LarfL~elG 337 (457)
T CHL00073 265 IGAP-FPIGPDGTRAWIEKIC--SVFGIE----PQGLEEREEQIWESLKDYLDLVRGKSVFFMGDNLLEISLARFLIRCG 337 (457)
T ss_pred eecC-CcCcHHHHHHHHHHHH--HHhCcC----HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHHCC
Confidence 0222 22674 5667776652 112543 2211 1112333333221 26899998887777778999999999
Q ss_pred CeeEEEEeee-eeeCCCCcHHHHHHc-C--C-CCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCe
Q 022234 201 FEVVRLNTYT-TEPVHHVDQTVLKQA-L--S-IPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 201 ~~v~~~~vY~-~~~~~~~~~~~~~~l-~--~-~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
..+..+-+-. .........+.+..+ + . .+.++...+ ....+.+.+.+. +.-++.-|-..+..+...|+..
T Consensus 338 mevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~~~~vive~~-D~~el~~~i~~~---~pDLlIgG~~~~~Pl~~~G~p~ 412 (457)
T CHL00073 338 MIVYEIGIPYMDKRYQAAELALLEDTCRKMNVPMPRIVEKP-DNYNQIQRIREL---QPDLAITGMAHANPLEARGINT 412 (457)
T ss_pred CEEEEEEeCCCChhhhHHHHHHHHHHhhhcCCCCcEEEeCC-CHHHHHHHHhhC---CCCEEEccccccCchhhcCCcc
Confidence 8886663221 111111111122221 1 2 234555554 455566666543 2334444446778888888863
No 235
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=52.45 E-value=1.3e+02 Score=25.59 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHhcccC--CCCCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEECh
Q 022234 164 KILASELPKN--GKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 236 (300)
Q Consensus 164 e~L~~~L~~~--~~~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~ 236 (300)
..|...++.. .....++++.+... +...+...|+.+|++| +.+=...+.+.....+.+ .++|+|.++..
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~v--i~LG~~vp~e~~v~~~~~--~~pd~v~lS~~ 144 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDV--IDLGRDVPIDTVVEKVKK--EKPLMLTGSAL 144 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEE--EECCCCCCHHHHHHHHHH--cCCCEEEEccc
Q ss_pred -----HHHHHHHHHhcccC-CCCceEEEeC-HHHHHHHHHcC
Q 022234 237 -----SAVRSWVNLISDTE-QWSNSVACIG-ETTASAAKRLG 271 (300)
Q Consensus 237 -----s~v~~~~~~~~~~~-~~~~~vv~IG-~~Ta~~l~~~G 271 (300)
..++.+.+.+++.. ..++++++=| +.+.+.+++.|
T Consensus 145 ~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~~~~~~~g 186 (197)
T TIGR02370 145 MTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQDWADKIG 186 (197)
T ss_pred cccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCHHHHHHhC
No 236
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=52.44 E-value=18 Score=35.86 Aligned_cols=48 Identities=17% Similarity=0.062 Sum_probs=37.0
Q ss_pred CCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHHH-hCCCCEEEe
Q 022234 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALA-KHRIDCLEL 79 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~~~~~l~~~L~-~~G~~v~~~ 79 (300)
+..+..|+.+ ..++..+.|++|+|.-.....-.+++.|. +.|++++..
T Consensus 277 ~~~~~~~~~r----~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElG~~vv~~ 325 (511)
T TIGR01278 277 AVSQAAWFAR----SIDSQSLTGKRAFVFGDATHAVGMTKILARELGIHIVGA 325 (511)
T ss_pred hhhhHHHHHh----hhhhHHhcCCeEEEEcCcHHHHHHHHHHHHhCCCEEEec
Confidence 3445578876 33445589999999988878889999997 899999754
No 237
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=52.44 E-value=52 Score=27.31 Aligned_cols=73 Identities=19% Similarity=0.128 Sum_probs=45.8
Q ss_pred cccCCCCcHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEE
Q 022234 155 AFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVV 231 (300)
Q Consensus 155 ~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~I 231 (300)
.++|. ++.+.++.|..+. ..|++++++ ||..-..-|...|.++|+.|+.+..|. .. +.+.....|+|
T Consensus 14 ~~~Pc--Tp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-----~~---l~~~~~~ADIV 83 (160)
T PF02882_consen 14 GFVPC--TPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-----KN---LQEITRRADIV 83 (160)
T ss_dssp SS--H--HHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-----SS---HHHHHTTSSEE
T ss_pred CCcCC--CHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-----Cc---ccceeeeccEE
Confidence 44543 6777887776543 478888777 666667778889999999997776665 11 22234678888
Q ss_pred EEEChH
Q 022234 232 AVASPS 237 (300)
Q Consensus 232 vftS~s 237 (300)
+-..+.
T Consensus 84 Vsa~G~ 89 (160)
T PF02882_consen 84 VSAVGK 89 (160)
T ss_dssp EE-SSS
T ss_pred eeeecc
Confidence 877654
No 238
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=52.27 E-value=1.1e+02 Score=28.27 Aligned_cols=153 Identities=15% Similarity=0.041 Sum_probs=79.5
Q ss_pred HHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh----hcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHH
Q 022234 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL----NDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 141 (300)
Q Consensus 66 ~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l----~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 141 (300)
.+..++.|+++..+-+-+.. ..+++.+.+ ++...|.|++--|---..-.+.+.+.-....-+=.+.+.-...|
T Consensus 61 ~k~a~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l 137 (299)
T PLN02516 61 RKACAEVGIKSFDVDLPENI---SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKL 137 (299)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhH
Confidence 44577779887665552211 123344333 35778999988773211111111111101111112222222222
Q ss_pred HHHhhccCCCccccccCCCCcHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCc
Q 022234 142 EEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD 218 (300)
Q Consensus 142 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~ 218 (300)
..- |....+.|- |+.+.++.|..+. ..|++++++ ||+....-|...|.++|+.|+.+.-.+ ..
T Consensus 138 ~~~------~~~~~~~Pc--Tp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T-----~n- 203 (299)
T PLN02516 138 AMK------GREPLFLPC--TPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT-----PD- 203 (299)
T ss_pred hcC------CCCCCCCCC--CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC-----CC-
Confidence 111 212234544 5667777776543 368888777 777777778889999998886664432 11
Q ss_pred HHHHHHcCCCCEEEEEChH
Q 022234 219 QTVLKQALSIPVVAVASPS 237 (300)
Q Consensus 219 ~~~~~~l~~~d~IvftS~s 237 (300)
+.+...+.|+|+-.-+.
T Consensus 204 --l~~~~~~ADIvv~AvGk 220 (299)
T PLN02516 204 --PESIVREADIVIAAAGQ 220 (299)
T ss_pred --HHHHHhhCCEEEEcCCC
Confidence 12223567888777655
No 239
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=51.77 E-value=56 Score=26.40 Aligned_cols=89 Identities=20% Similarity=0.110 Sum_probs=55.5
Q ss_pred cHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH
Q 022234 162 TGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA 238 (300)
Q Consensus 162 ~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~ 238 (300)
+.+++.+.|..+. ..|++++++ |+.....-|...|.+.|+.|..+.-.. .+ +.+.....|+|+-..+..
T Consensus 11 t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-----~~---l~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-----IQ---LQSKVHDADVVVVGSPKP 82 (140)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-----cC---HHHHHhhCCEEEEecCCC
Confidence 5667776665543 368888777 677778889999999998886554322 11 222345788888877766
Q ss_pred HHHHHHHhcccCC-CCceEEEeCHHH
Q 022234 239 VRSWVNLISDTEQ-WSNSVACIGETT 263 (300)
Q Consensus 239 v~~~~~~~~~~~~-~~~~vv~IG~~T 263 (300)
. + ++..++ ++..++-+|..-
T Consensus 83 -~-~---i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 83 -E-K---VPTEWIKPGATVINCSPTK 103 (140)
T ss_pred -C-c---cCHHHcCCCCEEEEcCCCc
Confidence 3 3 222221 355666666543
No 240
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=51.68 E-value=25 Score=26.49 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=40.7
Q ss_pred CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhh---cC-CccEEEEeChHHHHHHHHHHHHcCCCCceEEEEcc
Q 022234 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---DT-IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~---~~-~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
+++.+..+.|+++|..+..+.=- +....+++.+.+. .. ..| =|+||..++..++..- ....+++++|.
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNn---s~~s~~~~~~~L~~~Gi~~~~~-~i~ts~~~~~~~l~~~----~~~~~v~vlG~ 88 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNN---SSRSREEYAKKLKKLGIPVDED-EIITSGMAAAEYLKEH----KGGKKVYVLGS 88 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES----SSS-HHHHHHHHHHTTTT--GG-GEEEHHHHHHHHHHHH----TTSSEEEEES-
T ss_pred cCHHHHHHHHHHcCCCEEEEeCC---CCCCHHHHHHHHHhcCcCCCcC-EEEChHHHHHHHHHhc----CCCCEEEEEcC
Confidence 45667777777777655544321 1111123333331 11 223 3568888777776542 24778999987
Q ss_pred ch-HHHHHHH
Q 022234 136 GT-ASIFEEV 144 (300)
Q Consensus 136 ~T-a~~L~~~ 144 (300)
.. .+.+++.
T Consensus 89 ~~l~~~l~~~ 98 (101)
T PF13344_consen 89 DGLREELREA 98 (101)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 64 4456665
No 241
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=51.62 E-value=1.8e+02 Score=26.06 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=45.8
Q ss_pred CCe-EEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc
Q 022234 50 NPK-VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA 123 (300)
Q Consensus 50 g~~-VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~ 123 (300)
|.. +.+++..+ ..+.+.+++.|+.++.+|-..- ...|.+++.+.++..+.|+||.++.+.-..+...++..
T Consensus 31 g~~v~f~~~~~~--~~~~~~i~~~g~~v~~~~~~~~-~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~ 102 (279)
T TIGR03590 31 GAEVAFACKPLP--GDLIDLLLSAGFPVYELPDESS-RYDDALELINLLEEEKFDILIVDHYGLDADWEKLIKEF 102 (279)
T ss_pred CCEEEEEeCCCC--HHHHHHHHHcCCeEEEecCCCc-hhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHh
Confidence 445 44666543 4567899999999887764321 11233345555544578999999987666677777654
No 242
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=51.19 E-value=25 Score=25.50 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=27.6
Q ss_pred EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 022234 258 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 258 ~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~ 291 (300)
-||+...+.|++.|++++ .....+.+..++++.
T Consensus 61 ~iG~~~~~~L~~~gI~v~-~~~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 61 GIGEGAFRALKEAGIKVY-QGAGGDIEEALEAYL 93 (94)
T ss_dssp CSCHHHHHHHHHTTSEEE-ESTSSBHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCEEE-EcCCCCHHHHHHHHh
Confidence 399999999999999974 447788888888764
No 243
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=51.10 E-value=70 Score=28.77 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=19.7
Q ss_pred HHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 022234 165 ILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 165 ~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 206 (300)
.|+++|.+ .|.++.|++-.... .+.+.+++.|+.|..+
T Consensus 22 ~LA~~l~~---~g~~v~f~~~~~~~-~~~~~i~~~g~~v~~~ 59 (279)
T TIGR03590 22 TLARALHA---QGAEVAFACKPLPG-DLIDLLLSAGFPVYEL 59 (279)
T ss_pred HHHHHHHH---CCCEEEEEeCCCCH-HHHHHHHHcCCeEEEe
Confidence 45555532 24566666554432 3455666677665443
No 244
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=51.09 E-value=76 Score=26.46 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCC-ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH
Q 022234 176 KKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA 238 (300)
Q Consensus 176 ~~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~ 238 (300)
.+++++++...+ ....+...|.++|++|. +..+. .+++.+.+...|+|+.+.++.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~---v~~r~-----~~~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVT---VCHSK-----TKNLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEE---EEECC-----chhHHHHHhhCCEEEEcCCCC
Confidence 679999998876 36668899999997643 33321 123344457889888777664
No 245
>KOG4542 consensus Predicted membrane protein [Function unknown]
Probab=50.94 E-value=9.5 Score=28.03 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=35.1
Q ss_pred CCCCccchhhhhCCCCCCCCccccccccccccCCCCCCCeEEEeCCCC
Q 022234 13 FPASAVSSRLRLNRPLPFQFSRIQASSDATSASASNSNPKVVVTRERG 60 (300)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~ 60 (300)
.|.++|++..-+|+..+.-+.|-+.+. .--.++.|..||+..
T Consensus 3 ~p~~al~s~~~lQ~~~~~~a~~~~NLr------slQ~~ls~~~trsGa 44 (96)
T KOG4542|consen 3 APVGALRSGPSLQKDGDVSAAWSGNLR------SLQPSLSVIVTRSGA 44 (96)
T ss_pred ccccccccchHHhhhhhHHhhccCccc------cccCcceEEEeccCc
Confidence 488999999999999999999998855 445578899999863
No 246
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=50.93 E-value=39 Score=27.37 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=33.1
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhC-CCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC
Q 022234 47 SNSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS 109 (300)
Q Consensus 47 ~l~g~~VlitR~~~~~~~l~~~L~~~-G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS 109 (300)
-|.|-+|.-|... ++.|++. |+.+..+ + ..+.....++...+..+.+|.||+|.
T Consensus 29 ll~Gf~l~AT~gT------a~~L~~~~Gi~v~~v--i-~~~~gg~~~i~~~I~~g~i~lVInt~ 83 (142)
T PRK05234 29 LLEQHELYATGTT------GGLIQEATGLDVTRL--L-SGPLGGDQQIGALIAEGKIDMLIFFR 83 (142)
T ss_pred HhcCCEEEEeChH------HHHHHhccCCeeEEE--E-cCCCCCchhHHHHHHcCceeEEEEec
Confidence 3456676666543 3567777 8876655 1 12211224455566788999999986
No 247
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=50.93 E-value=2.5e+02 Score=27.48 Aligned_cols=215 Identities=10% Similarity=0.061 Sum_probs=107.2
Q ss_pred CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEcc-ch
Q 022234 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA-GT 137 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~~~i~aVG~-~T 137 (300)
.+..++.+.|++.|+++..... .....+++ -+.++...-+..+..+.....+.+++. +.+-..+--+|. .|
T Consensus 220 gd~~eik~lL~~~Gi~v~~~~s----g~~t~~~i---~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~~Gi~~T 292 (466)
T TIGR01282 220 GDAWESRILLEEIGLRVVAQWS----GDGTLNEM---ENAPKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKI 292 (466)
T ss_pred ccHHHHHHHHHHcCCeEEEEEC----CCCCHHHH---HhcccCCEEEEEChHHHHHHHHHHHHHhCCceEeCCCCCHHHH
Confidence 4567899999999999874221 11122333 245566666666666666666767653 332111112553 46
Q ss_pred HHHHHHHhhccCCCccccccCCCC-----cHHHHHHhccc---CCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEee
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKA-----TGKILASELPK---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~-----~~e~L~~~L~~---~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY 209 (300)
.+.|++.. .+.|.. +|+.. .-++++..+.+ ....|+|+.+..|......+...|++.|.++...-++
T Consensus 293 ~~~Lr~ia--~~~g~~---i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~~ 367 (466)
T TIGR01282 293 AESLRKIA--EFFDDE---IKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGYE 367 (466)
T ss_pred HHHHHHHH--HHHCch---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEeee
Confidence 67776662 111321 12110 00112222111 1236899988877766677888999999998633332
Q ss_pred eeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEe-cCC---C--CH
Q 022234 210 TTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYY-PTH---P--GL 283 (300)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v-~~~---p--~~ 283 (300)
... ....+...+.+.. +.+++-.+. ...+.+.+.+. +.-++.-|..-...++++|+.-+-+ ..+ | ..
T Consensus 368 ~~~--~~~~~~~~~~~~~-~~~i~~~~d-~~el~~~i~~~---~pDl~ig~~~~~~~a~k~gIP~~~~~~~~~~~~~~Gy 440 (466)
T TIGR01282 368 FAH--NDDYERTTKYMKD-GTLIYDDVT-HYEFEEFVEKL---KPDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPYHGY 440 (466)
T ss_pred cCC--HHHHHHHHHhcCC-CeEEeeCCC-HHHHHHHHHHh---CCCEEEecCCccceeeecCCCccccccccccCcchhH
Confidence 111 1111222333322 556654433 22233333332 3345555555556666777754322 122 2 55
Q ss_pred HHHHHHHHHH
Q 022234 284 EGWVDSILEA 293 (300)
Q Consensus 284 ~~l~~ai~~~ 293 (300)
++.++.+.+.
T Consensus 441 ~G~~~l~~~i 450 (466)
T TIGR01282 441 DGFAIFARDM 450 (466)
T ss_pred hHHHHHHHHH
Confidence 6666654443
No 248
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=50.49 E-value=2.4e+02 Score=27.20 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=29.7
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEe
Q 022234 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (300)
..+|+.|.||...-+-+ +...|...|.+.|++|...
T Consensus 30 ~~~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~ 66 (413)
T cd00401 30 ASKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWS 66 (413)
T ss_pred ccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEE
Confidence 34999999999987764 6678999999999998753
No 249
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=50.43 E-value=9.2 Score=22.60 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCC
Q 022234 236 PSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGL 272 (300)
Q Consensus 236 ~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~ 272 (300)
|..+..|+.-+.=. .+.-||+.|++.|+++|+
T Consensus 1 pe~v~~~l~~lpi~-----~~~GIG~kt~~kL~~~GI 32 (32)
T PF11798_consen 1 PEDVPEFLWPLPIR-----KFWGIGKKTAKKLNKLGI 32 (32)
T ss_dssp CHHHHHHHHCSBGG-----GSTTS-HHHHHHHHCTT-
T ss_pred ChHHHHHHhcCCHH-----hhCCccHHHHHHHHHccC
Confidence 34566666654322 344689999999999885
No 250
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=50.35 E-value=22 Score=33.93 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=69.3
Q ss_pred hhhhhCCCCCCCCccccccccccc-------cCCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchh
Q 022234 20 SRLRLNRPLPFQFSRIQASSDATS-------ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDR 92 (300)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~ 92 (300)
....+..-++.++.|.=.++.++. .+.--.|.+||+.+...-...+++.++.+|+++..+-.---++ .++++
T Consensus 43 ~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~-v~p~~ 121 (383)
T COG0075 43 VLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEA-VDPEE 121 (383)
T ss_pred HHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCC-CCHHH
Confidence 334444555556556666654444 4455578899999998888999999999999998765542222 35677
Q ss_pred HHHhhh-cCCccEEEEeC---h----HHHHHHHHHHHHc
Q 022234 93 LSSVLN-DTIFDWIIITS---P----EAGSVFLEAWKEA 123 (300)
Q Consensus 93 l~~~l~-~~~~d~ivFTS---~----~av~~~~~~l~~~ 123 (300)
+.+.|+ .++++.|.+|= + |-++...+.++++
T Consensus 122 v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~ 160 (383)
T COG0075 122 VEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEH 160 (383)
T ss_pred HHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHc
Confidence 888884 67899998862 2 2345555555554
No 251
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=50.28 E-value=2.3e+02 Score=26.97 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=83.0
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeee---------------------eEeeeCCC---chhHHHhhh
Q 022234 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPL---------------------IQHAQGPD---TDRLSSVLN 98 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~---------------------i~~~~~~~---~~~l~~~l~ 98 (300)
.++||.|-+|..+-+-+ +..-|...|.+.|++|..... +-...-.. +..+.+++.
T Consensus 39 ~~kPlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNplSTqD~vaaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~ 118 (420)
T COG0499 39 EEKPLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWKGETLEEYYEAIDQVLD 118 (420)
T ss_pred hcCCCCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCCCCcccHHHHHHHhhccCceEEEEcCCCHHHHHHHHHHHhC
Confidence 56999999999887754 678899999999999875433 22211100 011222220
Q ss_pred -------cCCccE--EEEeC---------------hHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccc
Q 022234 99 -------DTIFDW--IIITS---------------PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 154 (300)
Q Consensus 99 -------~~~~d~--ivFTS---------------~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 154 (300)
+...|. ++-+- ..+|..+.+ +.+.+.-..+++.|..+..+.+ |+.
T Consensus 119 ~~p~iiiDDG~D~~~~vh~~~~~l~~~i~G~tEETTTGV~RL~a-m~~~G~L~fPai~VNDs~tK~~----------FDN 187 (420)
T COG0499 119 WEPNIIIDDGGDLTKLVHLERPELLDAIKGGTEETTTGVHRLRA-MEKDGVLKFPAINVNDSVTKSL----------FDN 187 (420)
T ss_pred cCCCEEEecCcceeeeeecccHHHHHHhcCCCcccchHHHHHHH-HHhcCCcccceEeecchhhhcc----------ccc
Confidence 011111 12221 334444433 2333334667777777654432 222
Q ss_pred cccCCCCcHHHHHHhccc---CCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe
Q 022234 155 AFSPSKATGKILASELPK---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 208 (300)
Q Consensus 155 ~~~p~~~~~e~L~~~L~~---~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 208 (300)
.+. +.++++.-|.+ ....||.+++....-...-....|+..|++|...++
T Consensus 188 rYG----tgqS~~DgI~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEv 240 (420)
T COG0499 188 RYG----TGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEV 240 (420)
T ss_pred ccc----cchhHHHHHHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEec
Confidence 222 33444444433 223678888887666555678889999999765444
No 252
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=50.03 E-value=2.1e+02 Score=26.46 Aligned_cols=140 Identities=14% Similarity=0.069 Sum_probs=79.3
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
-+.+.|.+.|.++...+.- ...+.+ ..+..+..|...+++..++..... .+. ..+++.++...
T Consensus 25 ~fe~~l~~~Gl~Ve~~~f~-----~~~~~l-~Al~aG~iD~~~~g~~~~~~~~~a----~g~-~~~iv~v~~~~------ 87 (328)
T TIGR03427 25 IVDKWADKYGITIEVVQIN-----DYVESI-NQYTAGKFDGCTMTNMDALTIPAA----GGV-DTTALIVGDFS------ 87 (328)
T ss_pred chhhhHHHcCCeEEEEECC-----ChHHHH-HHHHcCCCCEEeecCHHHHHHHHh----CCC-CeEEEEEEccC------
Confidence 3445667777776554331 112223 234467888877777666533221 222 35666666432
Q ss_pred HhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHH
Q 022234 144 VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK 223 (300)
Q Consensus 144 ~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~ 223 (300)
. |-...+++.. +.+.+. +|++|.+.+|..+.-.|...|++.|.+...+.+-...+ .+...
T Consensus 88 ~------g~~~ivv~~i-------~svaDL--KGKkIav~~gs~~~~ll~~aL~~aGL~~~DV~~v~~~~-----~d~~a 147 (328)
T TIGR03427 88 N------GNDGIVLKGG-------KSLADL--KGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSD-----ADIVA 147 (328)
T ss_pred C------CceEEEECCC-------CCHHHc--CCCEEeccCCChHHHHHHHHHHHcCCCHHHeEEEeCCh-----HHHHH
Confidence 2 2222223221 222222 68999999998888888999999998765554433322 12223
Q ss_pred Hc--CCCCEEEEEChHHHH
Q 022234 224 QA--LSIPVVAVASPSAVR 240 (300)
Q Consensus 224 ~l--~~~d~IvftS~s~v~ 240 (300)
.+ +++|+++...|....
T Consensus 148 Al~~G~VDAa~~~eP~~s~ 166 (328)
T TIGR03427 148 AFITKDVTAVVTWNPQLSE 166 (328)
T ss_pred HHhcCCCcEEEEcCchHHH
Confidence 33 689998888887544
No 253
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.92 E-value=2.1e+02 Score=26.29 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcccC--CCCceEEEeC------HHHHHHHHHcCCCeEEe-cCCCCHHHHH
Q 022234 236 PSAVRSWVNLISDTE--QWSNSVACIG------ETTASAAKRLGLKNVYY-PTHPGLEGWV 287 (300)
Q Consensus 236 ~s~v~~~~~~~~~~~--~~~~~vv~IG------~~Ta~~l~~~G~~~~~v-~~~p~~~~l~ 287 (300)
|-+..+.+++++.++ +.+..++.|| ...|..|.+.|..+.+. ...++.++++
T Consensus 139 PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~ 199 (296)
T PRK14188 139 PCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVC 199 (296)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 334444445444433 3456666666 78888898999987655 2444544443
No 254
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=49.67 E-value=28 Score=27.54 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=34.1
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhh--cCCccEEEEeChHHH
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--DTIFDWIIITSPEAG 113 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~--~~~~d~ivFTS~~av 113 (300)
...+.+.|++.|+++....++. +|.+.+.+.+. ...+|.||.|...++
T Consensus 20 ~~~l~~~l~~~G~~~~~~~~v~----Dd~~~I~~~l~~~~~~~dliittGG~g~ 69 (135)
T smart00852 20 GPALAELLTELGIEVTRYVIVP----DDKEAIKEALREALERADLVITTGGTGP 69 (135)
T ss_pred HHHHHHHHHHCCCeEEEEEEeC----CCHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 4678999999999988766653 45566666652 356898888776553
No 255
>PRK04017 hypothetical protein; Provisional
Probab=49.65 E-value=66 Score=25.85 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcC-C----
Q 022234 113 GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPAS-A---- 186 (300)
Q Consensus 113 v~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg-~---- 186 (300)
+..+.+.|.+....+..|++=|+.=.++|+++ |+..++..... .-..+.+.+.. .++.|+++.- +
T Consensus 9 ~~e~i~~L~e~s~~g~vIVVEGk~D~~~L~~l------Gv~~~iI~t~g~~~~~~~e~ia~---~~r~VIILTD~D~~Ge 79 (132)
T PRK04017 9 FEEIIEELKEFSEAGAPIIVEGKRDVESLRKL------GVEGEIIKVSRTPLAEIAELIAS---RGKEVIILTDFDRKGE 79 (132)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCccHHHHHHHc------CCCccEEEECCeecchHHHHHHh---cCCeEEEEECCCcchH
Confidence 34455556666556788899999999999999 88765443221 11222233322 2345555533 2
Q ss_pred CChhHHHHHHHhCCCeeE
Q 022234 187 KASNEIEEGLSNRGFEVV 204 (300)
Q Consensus 187 ~~~~~L~~~L~~~G~~v~ 204 (300)
.-+..+.+.|+..|+.|+
T Consensus 80 kIr~~l~~~l~~~G~~vd 97 (132)
T PRK04017 80 ELAKKLSEYLQGYGIKVD 97 (132)
T ss_pred HHHHHHHHHHHhCCCCcc
Confidence 335567778888887663
No 256
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=49.60 E-value=2.8e+02 Score=28.37 Aligned_cols=213 Identities=17% Similarity=0.141 Sum_probs=104.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCC---
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTP--- 126 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~--- 126 (300)
+.+|-+..+---+..-.+.|+++|+.++.- .++ ..+-+.|||.+=-.-....+.+++.+..
T Consensus 30 ~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~~----------~~~------~~~~~~vii~aHG~~~~~~~~~~~~~~~viD 93 (647)
T PRK00087 30 KGKIYTLGPLIHNNQVVEKLKKKGIKPIED----------IDE------LNEGDTIIIRSHGVPPEVLEELKDKGLKVID 93 (647)
T ss_pred CCCEEEeCCCcCCHHHHHHHHHCCCEEeCC----------Hhh------CCCCCEEEEeCCCCCHHHHHHHHHCCCeEEE
Confidence 567877777777889999999999988731 111 1223455554433334444445454431
Q ss_pred -CceEEEEccchHHHHHHHhhccCCCccccccCCC-------------------CcHHHHHHhcccCCCCCCEEEEEcCC
Q 022234 127 -NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-------------------ATGKILASELPKNGKKKCTVLYPASA 186 (300)
Q Consensus 127 -~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-------------------~~~e~L~~~L~~~~~~~~~vL~~rg~ 186 (300)
.+++..--...++.+.+. |+.+.++... .+.+++- .|. ..+++.++.--
T Consensus 94 aTCP~V~k~~~~~~~~~~~------g~~ivi~G~~~HpEv~g~~g~~~~~~~vv~~~~~~~-~~~----~~~~~~~~~QT 162 (647)
T PRK00087 94 ATCPFVKNIQKLAKKYYEE------GYQIVIVGDKNHPEVIGINGWCNNSAIIVEDGEEAE-KLP----FDKKICVVSQT 162 (647)
T ss_pred CCCcCchHHHHHHHHHHhC------CCEEEEEeCCCCCeeeeeccccCCCEEEECCHHHHh-hCC----CCCCEEEEEcC
Confidence 233332222222333332 4433332221 1223221 222 12455554322
Q ss_pred -CChh---HHHHHHHhCCCeeEEEEeeeeeeCCCCc-H-HHHHHcCCCCEEEEEC---hHHHHHHHHHhcccCCCCceEE
Q 022234 187 -KASN---EIEEGLSNRGFEVVRLNTYTTEPVHHVD-Q-TVLKQALSIPVVAVAS---PSAVRSWVNLISDTEQWSNSVA 257 (300)
Q Consensus 187 -~~~~---~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~-~~~~~l~~~d~IvftS---~s~v~~~~~~~~~~~~~~~~vv 257 (300)
...+ .+.+.|+++. ..+.++.+.+..... . .+.+.....|++++-. ++.-..+++...... .+.+
T Consensus 163 T~~~~~~~~~~~~l~~~~---~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~~~~---~~~~ 236 (647)
T PRK00087 163 TEKQENFEKVLKELKKKG---KEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKSNC---TNTI 236 (647)
T ss_pred CCcHHHHHHHHHHHHHhC---CCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHC---CCEE
Confidence 2222 4566676543 445556665554432 1 1222235789877642 234455667665432 2333
Q ss_pred EeCHHHHHHHHH---cCCCe-EEecCCCCHHHHHHHHHHHHHcc
Q 022234 258 CIGETTASAAKR---LGLKN-VYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 258 ~IG~~Ta~~l~~---~G~~~-~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
-|- +++.+.. .|.+. -+.+...+++.+++.+..++...
T Consensus 237 ~ie--~~~el~~~~~~~~~~vgitagaStP~~~i~~v~~~l~~~ 278 (647)
T PRK00087 237 HIE--NAGELPEEWFKGVKIIGVTAGASTPDWIIEEVIKKMSEL 278 (647)
T ss_pred EEC--ChHHCCHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHh
Confidence 331 1122221 13333 35677778888888888777654
No 257
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=49.59 E-value=77 Score=26.39 Aligned_cols=87 Identities=21% Similarity=0.108 Sum_probs=53.4
Q ss_pred EEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe----ChHHHHHHHHHHHHcCCCCce
Q 022234 54 VVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT----SPEAGSVFLEAWKEAGTPNVR 129 (300)
Q Consensus 54 litR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT----S~~av~~~~~~l~~~~~~~~~ 129 (300)
++.+.......+.+.|++.|+++..+|.-+.. +.+ ..+..+|.||++ |+.....+.... +.-..+.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~-----~~~---~~~~~~dgvil~gG~~~~~~~~~~~~i~-~~~~~~~P 73 (184)
T cd01743 3 LIDNYDSFTYNLVQYLRELGAEVVVVRNDEIT-----LEE---LELLNPDAIVISPGPGHPEDAGISLEII-RALAGKVP 73 (184)
T ss_pred EEeCCCccHHHHHHHHHHcCCceEEEeCCCCC-----HHH---HhhcCCCEEEECCCCCCcccchhHHHHH-HHHhcCCC
Confidence 34566677889999999999999988873321 111 124579998875 333222222222 21123688
Q ss_pred EEEEccchHHHHHHHhhccCCCcccc
Q 022234 130 IGVVGAGTASIFEEVIQSSKCSLDVA 155 (300)
Q Consensus 130 i~aVG~~Ta~~L~~~~~~~~~G~~~~ 155 (300)
++.|.-...-....+ |-++.
T Consensus 74 vlGIC~G~Qlla~~~------Gg~v~ 93 (184)
T cd01743 74 ILGVCLGHQAIAEAF------GGKVV 93 (184)
T ss_pred EEEECHhHHHHHHHh------CCEEE
Confidence 888888866666655 76654
No 258
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=49.06 E-value=1.1e+02 Score=22.89 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=61.4
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHH
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAV 239 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v 239 (300)
.+..+++.|.+. +.++.++..+.. ..+.+++.|..+ +. -+....+.++.+ .+.+.++.+.+.-.
T Consensus 9 ~~~~i~~~L~~~---~~~vvvid~d~~---~~~~~~~~~~~~-----i~---gd~~~~~~l~~a~i~~a~~vv~~~~~d~ 74 (116)
T PF02254_consen 9 IGREIAEQLKEG---GIDVVVIDRDPE---RVEELREEGVEV-----IY---GDATDPEVLERAGIEKADAVVILTDDDE 74 (116)
T ss_dssp HHHHHHHHHHHT---TSEEEEEESSHH---HHHHHHHTTSEE-----EE---S-TTSHHHHHHTTGGCESEEEEESSSHH
T ss_pred HHHHHHHHHHhC---CCEEEEEECCcH---HHHHHHhccccc-----cc---ccchhhhHHhhcCccccCEEEEccCCHH
Confidence 456777777762 357888876553 356678888442 22 222233445543 57888888877766
Q ss_pred HHHHHH--hcccCCCCceEE--EeCHHHHHHHHHcCCCeEEec
Q 022234 240 RSWVNL--ISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYP 278 (300)
Q Consensus 240 ~~~~~~--~~~~~~~~~~vv--~IG~~Ta~~l~~~G~~~~~v~ 278 (300)
.++.-. +++.. .+.+++ +-.+.-++.+++.|...++.|
T Consensus 75 ~n~~~~~~~r~~~-~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 75 ENLLIALLARELN-PDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp HHHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred HHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 665442 22211 234444 458899999999999876643
No 259
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=48.83 E-value=2e+02 Score=25.66 Aligned_cols=193 Identities=15% Similarity=0.086 Sum_probs=96.3
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-HHHHHHHHHHHcCC---
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-AGSVFLEAWKEAGT--- 125 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-av~~~~~~l~~~~~--- 125 (300)
.++||+.....++..+++.|.+.|..++..-.-+.... .....-+.+-+- ..+.+.+.+.+.+.
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~~------------~~~~~~v~~G~l~~~~~l~~~l~~~~i~~V 69 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGGP------------ADLPGPVRVGGFGGAEGLAAYLREEGIDLV 69 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCCc------------ccCCceEEECCCCCHHHHHHHHHHCCCCEE
Confidence 46799988888889999999999986664332221110 011222223333 33344444444432
Q ss_pred -C-CceEEE-EccchHHHHHHHhhccCCCcccccc--CC-----------CCcHHHHHHhcccCCCCCCEEEEEcCCCCh
Q 022234 126 -P-NVRIGV-VGAGTASIFEEVIQSSKCSLDVAFS--PS-----------KATGKILASELPKNGKKKCTVLYPASAKAS 189 (300)
Q Consensus 126 -~-~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~--p~-----------~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~ 189 (300)
| .-++++ |-....++.++. |+.-.-. |. -.+.+++++.+.+. ++||+..|...-
T Consensus 70 IDATHPfA~~is~~a~~ac~~~------~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~~----~~vllttGsk~l 139 (248)
T PRK08057 70 IDATHPYAAQISANAAAACRAL------GIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAPF----RRVLLTTGRQPL 139 (248)
T ss_pred EECCCccHHHHHHHHHHHHHHh------CCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhcc----CCEEEecCcchH
Confidence 1 223222 333344455554 5432100 10 12456666666543 689998887764
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEe---CH----H
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI---GE----T 262 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~I---G~----~ 262 (300)
..+...+ ....+|-++.+.... +.-+..-++|...-|-+.+.=..+++.. ++.+++. |. .
T Consensus 140 ~~f~~~~-------~~~r~~~RvLP~~~s---~~g~~~~~iiam~gPfs~e~n~aL~~~~---~i~~lVtK~SG~~g~~e 206 (248)
T PRK08057 140 AHFAAIL-------PEHRLLVRVLPPPEV---LLGLPRAEIIALRGPFSLELERALLRQH---RIDVVVTKNSGGAGTEA 206 (248)
T ss_pred HHHhhcC-------CCCEEEEEECCCchh---cCCCChhhEEEeeCCCCHHHHHHHHHHc---CCCEEEEcCCCchhhHH
Confidence 4443221 113455555444321 1112345677777766655444444443 3333322 22 1
Q ss_pred HHHHHHHcCCCeEEe
Q 022234 263 TASAAKRLGLKNVYY 277 (300)
Q Consensus 263 Ta~~l~~~G~~~~~v 277 (300)
=-++++++|+.++++
T Consensus 207 Ki~AA~~lgi~vivI 221 (248)
T PRK08057 207 KLEAARELGIPVVMI 221 (248)
T ss_pred HHHHHHHcCCeEEEE
Confidence 126778899987544
No 260
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=48.58 E-value=58 Score=31.87 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=56.7
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCch-----hHHHhhhcCC-ccEEEEeChHHHHHHHHHH
Q 022234 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTD-----RLSSVLNDTI-FDWIIITSPEAGSVFLEAW 120 (300)
Q Consensus 47 ~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~-----~l~~~l~~~~-~d~ivFTS~~av~~~~~~l 120 (300)
-+.|||+.++-.....-.+++.|.+.|.+++.+-. .. ...+.+ .+...+.... .+.++...++ ...+.+.+
T Consensus 311 ~L~GKrvai~Gdp~~~i~LarfL~elGmevV~vgt-~~-~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D-~~el~~~i 387 (457)
T CHL00073 311 LVRGKSVFFMGDNLLEISLARFLIRCGMIVYEIGI-PY-MDKRYQAAELALLEDTCRKMNVPMPRIVEKPD-NYNQIQRI 387 (457)
T ss_pred HHCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEe-CC-CChhhhHHHHHHHHHHhhhcCCCCcEEEeCCC-HHHHHHHH
Confidence 47899999998878889999999999999998822 11 111211 1212111112 2455566555 44445555
Q ss_pred HHcCCCCceEEEEccchHHHHHHHhhccCCCccc
Q 022234 121 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 154 (300)
Q Consensus 121 ~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 154 (300)
++... -++.-|-..+.-|... |+..
T Consensus 388 ~~~~p---DLlIgG~~~~~Pl~~~------G~p~ 412 (457)
T CHL00073 388 RELQP---DLAITGMAHANPLEAR------GINT 412 (457)
T ss_pred hhCCC---CEEEccccccCchhhc------CCcc
Confidence 55433 3444444556666666 6655
No 261
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=48.57 E-value=28 Score=31.96 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=23.6
Q ss_pred eEEEe--CCCCchHHHHHHHHhCCCCEEEee
Q 022234 52 KVVVT--RERGKNGKLIKALAKHRIDCLELP 80 (300)
Q Consensus 52 ~Vlit--R~~~~~~~l~~~L~~~G~~v~~~P 80 (300)
+|.+| ||..+...+++.|++.|+++..++
T Consensus 147 ~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~ 177 (301)
T COG1184 147 KVIVTESRPRGEGRIMAKELRQSGIPVTVIV 177 (301)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCceEEEe
Confidence 78887 777778899999999998776654
No 262
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=48.40 E-value=95 Score=25.94 Aligned_cols=36 Identities=25% Similarity=0.158 Sum_probs=22.8
Q ss_pred CccEEEEeChHHHHHHHHHHHHcCC--CCceEEEEccc
Q 022234 101 IFDWIIITSPEAGSVFLEAWKEAGT--PNVRIGVVGAG 136 (300)
Q Consensus 101 ~~d~ivFTS~~av~~~~~~l~~~~~--~~~~i~aVG~~ 136 (300)
..+.|++.+......+.+.+.+.+. ++..+++.+..
T Consensus 182 ~~~~i~~~~~~~a~~~~~~~~~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 182 KPDAIFACNDEMAAGALKAAREAGLTPGDISIIGFDGS 219 (269)
T ss_pred CCCEEEEcCchHHHHHHHHHHHcCCCCCCCEEEecccc
Confidence 5677777776666677677766665 35555555443
No 263
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=48.36 E-value=90 Score=26.99 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=51.3
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~ 291 (300)
.++|.|++.++..++.+-+....... .+...-+.-+.+++.+.+.|++.++.+.+-+.+.|-+...
T Consensus 14 ~g~dgi~v~~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~ 80 (233)
T PF01136_consen 14 LGVDGILVSNPGLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLSPELSLEEIKEIAE 80 (233)
T ss_pred CCCCEEEEcCHHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEECccCCHHHHHHHHH
Confidence 38999999999999988776543321 2445556788999999999999988888888888776544
No 264
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=48.35 E-value=1.1e+02 Score=23.84 Aligned_cols=94 Identities=21% Similarity=0.231 Sum_probs=55.1
Q ss_pred EEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-HHHHHHHHHHHcCCCCceEE
Q 022234 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIG 131 (300)
Q Consensus 53 VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-av~~~~~~l~~~~~~~~~i~ 131 (300)
||+|.+- .++..+.|++ |+++...+ ..+.+++.+ .+.++|.++..+.. --+.+++.+. ++|++
T Consensus 1 ili~~~~--~~~~~~~l~~-~~~v~~~~------~~~~~~~~~--~l~~~d~ii~~~~~~~~~~~l~~~~-----~Lk~I 64 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEE-GFEVEFCD------SPSEEELAE--RLKDADAIIVGSGTPLTAEVLEAAP-----NLKLI 64 (133)
T ss_dssp EEESSS---SHHHHHHHHH-TSEEEEES------SSSHHHHHH--HHTTESEEEESTTSTBSHHHHHHHT-----T-SEE
T ss_pred eEEeccC--CHHHHHHHHC-CceEEEeC------CCCHHHHHH--HhCCCeEEEEcCCCCcCHHHHhccc-----eeEEE
Confidence 6788865 4777888888 77776666 122333333 25679999987766 2244444442 34433
Q ss_pred E-Eccch----HHHHHHHhhccCCCccccccCCCCcHHHHHHh
Q 022234 132 V-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE 169 (300)
Q Consensus 132 a-VG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~ 169 (300)
+ .|.+. -+++.+. |+.+...|. .+++..++.
T Consensus 65 ~~~~~G~d~id~~~a~~~------gI~V~n~~g-~~~~aVAE~ 100 (133)
T PF00389_consen 65 STAGAGVDNIDLEAAKER------GIPVTNVPG-YNAEAVAEH 100 (133)
T ss_dssp EESSSSCTTB-HHHHHHT------TSEEEE-TT-TTHHHHHHH
T ss_pred EEcccccCcccHHHHhhC------eEEEEEeCC-cCCcchhcc
Confidence 3 33222 4577888 998877665 455555543
No 265
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=48.12 E-value=2.2e+02 Score=29.11 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=30.4
Q ss_pred CCcHHHHHHhcccCCCCCCEEEEEcCCCC-hhHHHHHHHhC-CC
Q 022234 160 KATGKILASELPKNGKKKCTVLYPASAKA-SNEIEEGLSNR-GF 201 (300)
Q Consensus 160 ~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-~~~L~~~L~~~-G~ 201 (300)
..+-.+|.+.+.....+.++|+++.|+.. ...|.+.|.+. |+
T Consensus 573 HaD~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~~~~ 616 (630)
T TIGR03675 573 HSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKKFNI 616 (630)
T ss_pred cCCHHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHHhCC
Confidence 34567888888766545579999999864 77888888754 43
No 266
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=47.87 E-value=2.1e+02 Score=25.83 Aligned_cols=143 Identities=18% Similarity=0.156 Sum_probs=76.0
Q ss_pred cCCCCCCCeEEEeCCC-----CchHHHHHHHHhCCCCEEEeeee-EeeeCCCchhHHHhhhcCCccEEE-----EeChHH
Q 022234 44 ASASNSNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLI-QHAQGPDTDRLSSVLNDTIFDWII-----ITSPEA 112 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~-----~~~~~l~~~L~~~G~~v~~~P~i-~~~~~~~~~~l~~~l~~~~~d~iv-----FTS~~a 112 (300)
|..-..|...+++|.. +....+...|++.|+.++..+.= ..+..-| ++-. +-++|+ =|+..+
T Consensus 71 D~~~v~~~~avl~r~~~p~R~gE~~~~~~~~~~lgi~i~~~~~~~~~eG~GD------~l~~-~~~~v~iG~s~RTn~eg 143 (267)
T COG1834 71 DPGLVTGEGAVLARMGAPERRGEEEAIKETLESLGIPIYPRVEAGVFEGAGD------VLMD-GGDTVYIGYSFRTNLEG 143 (267)
T ss_pred cceeEecccEEEeccCChhhccCHHHHHHHHHHcCCcccccccCCCcccccc------EEEe-CCcEEEEEeccccchHH
Confidence 4455778888898875 34678999999999985433221 1111011 1101 012222 177788
Q ss_pred HHHHHHHHHHcCC----------------------CCceEEEEccchH---HHHHHHhhccCCCccccccCCCCcHHHHH
Q 022234 113 GSVFLEAWKEAGT----------------------PNVRIGVVGAGTA---SIFEEVIQSSKCSLDVAFSPSKATGKILA 167 (300)
Q Consensus 113 v~~~~~~l~~~~~----------------------~~~~i~aVG~~Ta---~~L~~~~~~~~~G~~~~~~p~~~~~e~L~ 167 (300)
++.+...+. .++ ++.-++|.+---. +.+++. |++-..+|.... ..
T Consensus 144 i~~l~~~L~-~~~~v~~~~~~~~~lHLdt~~~~l~e~~al~y~~~~~~~~~~~lk~r------~~~~I~Vpe~e~---~~ 213 (267)
T COG1834 144 IEQLQAWLE-EGYEVSLVRLDERYLHLDTVFNPLAEGLALAYPPAFSEGANDVLKER------GFELIEVPEEEA---FA 213 (267)
T ss_pred HHHHHHHhc-cCcEEEEEecCCceeehhheeeeccCcceeecchhcchhHHHHHhhC------CceEEecCHhHh---hh
Confidence 888888776 221 2445555544444 566666 777655665322 21
Q ss_pred HhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 022234 168 SELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 168 ~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 207 (300)
+..+..+-++..++....... .+.|.+.|++|.++.
T Consensus 214 --l~~n~v~~g~~~v~~~~~~~~--~e~L~~~GfeVi~~~ 249 (267)
T COG1834 214 --LGCNVVSLGPNVVIALPRTPK--AEQLAAAGFEVIEVD 249 (267)
T ss_pred --hccceeecCCceeecCcccch--HHHHHhCCceEEecC
Confidence 222221112222222222211 788999998886654
No 267
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=47.55 E-value=47 Score=30.01 Aligned_cols=102 Identities=13% Similarity=0.182 Sum_probs=51.8
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHH---HHHHc--CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCH--
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT---VLKQA--LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE-- 261 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~---~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~-- 261 (300)
..-+.+.|++.|+.. +-..|+......+... ..+.+ .++|.|+.+...++..+.+.... +++++..|-
T Consensus 17 ~~gf~~~L~~~g~~~-~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa~~~~~~~~~----~iPVVf~~V~d 91 (294)
T PF04392_consen 17 VRGFKDGLKELGYDE-KNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAAQALAKHLKD----DIPVVFCGVSD 91 (294)
T ss_dssp HHHHHHHHHHTT--C-CCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHHHHHHHH-SS-----S-EEEECES-
T ss_pred HHHHHHHHHHcCCcc-ccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHhcCC----CcEEEEEeccC
Confidence 445778899999776 3333444333433332 33333 48999998888888888877653 155555443
Q ss_pred -HHHHHHHHc---CCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 262 -TTASAAKRL---GLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 262 -~Ta~~l~~~---G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
.-+...... |-+..-+.+.+..+..++.+.+.+.
T Consensus 92 p~~~~l~~~~~~~~~nvTGv~~~~~~~~~l~l~~~l~P 129 (294)
T PF04392_consen 92 PVGAGLVDSLDRPGKNVTGVSERPPIEKQLELIKKLFP 129 (294)
T ss_dssp TTTTTS-S-SSS--SSEEEEEE---HHHHHHHHHHHST
T ss_pred hhhhhccccccCCCCCEEEEECCcCHHHHHHHHHHhCC
Confidence 222222222 2234445577777777777776653
No 268
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=47.54 E-value=1.9e+02 Score=25.07 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=48.4
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhh-c-CCccE--EEEeChHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN-D-TIFDW--IIITSPEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~-~-~~~d~--ivFTS~~av~~~~~~l 120 (300)
..+.||+++||..... ...+++.|.++|++++.+-. ...+...+.++ . .++.. +=+++..+++.+++..
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGV------AEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQA 77 (251)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC------chHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 3577999999987653 56899999999999875421 11122222221 1 11222 2247888898888876
Q ss_pred HHc-CCCCceEEEEc
Q 022234 121 KEA-GTPNVRIGVVG 134 (300)
Q Consensus 121 ~~~-~~~~~~i~aVG 134 (300)
.+. +.-+.-+.+.|
T Consensus 78 ~~~~g~iD~lv~~ag 92 (251)
T PRK12481 78 VEVMGHIDILINNAG 92 (251)
T ss_pred HHHcCCCCEEEECCC
Confidence 543 32234444444
No 269
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=47.48 E-value=60 Score=24.64 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=48.1
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC--hHHHHHHHHHhcccC--CCCceEEEeCH
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS--PSAVRSWVNLISDTE--QWSNSVACIGE 261 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS--~s~v~~~~~~~~~~~--~~~~~vv~IG~ 261 (300)
+-..+...|++.|++|..+.+.. ..+++.+.+ .++|+|.|++ ...........+... ..+.++++=|+
T Consensus 16 Gl~~la~~l~~~G~~v~~~d~~~------~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDILDANV------PPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEEESSB-------HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHHHHCCCeEEEECCCC------CHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 35578888999998776553322 113333333 4889999976 444444444443321 24678888786
Q ss_pred H-HH---HHHHH-cCCCeEEec
Q 022234 262 T-TA---SAAKR-LGLKNVYYP 278 (300)
Q Consensus 262 ~-Ta---~~l~~-~G~~~~~v~ 278 (300)
. |. ..+++ .|+..++.-
T Consensus 90 ~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 90 HATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SSGHHHHHHHHHHHTSEEEEEE
T ss_pred chhcChHHHhccCcCcceecCC
Confidence 5 22 22334 677654433
No 270
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=47.44 E-value=1.4e+02 Score=28.20 Aligned_cols=72 Identities=15% Similarity=-0.006 Sum_probs=45.7
Q ss_pred cccCCCCcHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEE
Q 022234 155 AFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVV 231 (300)
Q Consensus 155 ~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~I 231 (300)
.+.|- ++.+.++.|..+. ..|++++++ |++....-|..-|.++|+.|+.+.-.. .. +.+...+.|+|
T Consensus 209 ~f~PC--Tp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T-----~n---l~~~~r~ADIV 278 (364)
T PLN02616 209 LFVPC--TPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-----KN---PEEITREADII 278 (364)
T ss_pred CCCCC--CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC-----CC---HHHHHhhCCEE
Confidence 34544 5777887776543 368887777 777777778888999998886554322 11 11223467877
Q ss_pred EEECh
Q 022234 232 AVASP 236 (300)
Q Consensus 232 vftS~ 236 (300)
+-.-+
T Consensus 279 IsAvG 283 (364)
T PLN02616 279 ISAVG 283 (364)
T ss_pred EEcCC
Confidence 76543
No 271
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=47.34 E-value=17 Score=30.81 Aligned_cols=61 Identities=21% Similarity=0.152 Sum_probs=40.1
Q ss_pred cCCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe
Q 022234 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT 108 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT 108 (300)
+-++|.||+|.+++.......+...|+++|+....+-.+. .+ ...+...+..+..|+++..
T Consensus 87 ~~~DLkGK~i~v~~~s~~~~~~~~~l~~~g~~~~~v~~v~---~~-~~~~~~al~~g~vDa~~~~ 147 (216)
T PF09084_consen 87 SPADLKGKKIGVSRGSSSEYFLRALLKKNGIDPDDVKIVN---LG-PPELAQALLSGQVDAAILW 147 (216)
T ss_dssp SGGGGTTSEEEESTTSHHHHHHHHHHHHTTT-GGGSEEEE---S--HHHHHHHHHTTSSSEEEEE
T ss_pred CHHHhCCCEEEEecCcchhHHHHHHHHHhccccccceeee---ee-hhhhhhhhhcCCCCEEEEc
Confidence 4477999999999955556688899999999665444333 22 2233335556788887733
No 272
>PRK07053 glutamine amidotransferase; Provisional
Probab=47.32 E-value=1.3e+02 Score=26.33 Aligned_cols=92 Identities=9% Similarity=-0.012 Sum_probs=52.8
Q ss_pred CCeEEEeCCC--CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-HH---------HHHH
Q 022234 50 NPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-AG---------SVFL 117 (300)
Q Consensus 50 g~~VlitR~~--~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-av---------~~~~ 117 (300)
.++|+|.+.. +.-..+.+.|++.|+++..+....-...+. ...+||.||++-.. ++ ....
T Consensus 2 m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~--------~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~ 73 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETL--------DALEPDLLVVLGGPIGVYDDELYPFLAPEI 73 (234)
T ss_pred CceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCC--------CccCCCEEEECCCCCCCCCCCcCCcHHHHH
Confidence 4678888665 355789999999998887666543221110 23468888887631 21 1122
Q ss_pred HHHHHcCCCCceEEEEccchHHHHHHHhhccCCCcccc
Q 022234 118 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 155 (300)
Q Consensus 118 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~ 155 (300)
+.+++....+.+++.|.-.-.-..+.. |.++.
T Consensus 74 ~~i~~~~~~~~PvlGIC~G~Qlla~al------Gg~V~ 105 (234)
T PRK07053 74 ALLRQRLAAGLPTLGICLGAQLIARAL------GARVY 105 (234)
T ss_pred HHHHHHHHCCCCEEEECccHHHHHHHc------CCcEe
Confidence 222222123567777766654444555 77763
No 273
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=46.89 E-value=1.9e+02 Score=24.88 Aligned_cols=153 Identities=17% Similarity=0.099 Sum_probs=80.0
Q ss_pred CCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCC
Q 022234 100 TIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 177 (300)
Q Consensus 100 ~~~d~ivFTS~~-av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~ 177 (300)
...+.||..... .+......+.+ .+++++..+.... .+... .. ..-....|.. .....+++.+.... ..
T Consensus 65 ~~v~~iig~~~~~~~~~~~~~~~~---~~ip~i~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 135 (298)
T cd06268 65 DGVDAVIGPLSSGVALAAAPVAEE---AGVPLISPGATSP-ALTGK---GN-PYVFRTAPSDAQQAAALADYLAEKG-KV 135 (298)
T ss_pred CCceEEEcCCcchhHHhhHHHHHh---CCCcEEccCCCCc-ccccC---CC-ceEEEcccCcHHHHHHHHHHHHHhc-CC
Confidence 467777765432 33444444444 3566766655432 22211 00 1111122332 23556666665543 24
Q ss_pred CEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-HHHHHHHHHhccc
Q 022234 178 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLISDT 249 (300)
Q Consensus 178 ~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-s~v~~~~~~~~~~ 249 (300)
+++.++.++.. .+.+.+.+++.|+++.....|.... ......+..+ .+.|+|++.+. ..+..+++.+.+.
T Consensus 136 ~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~ 213 (298)
T cd06268 136 KKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGA--TDFSPLIAKLKAAGPDAVFLAGYGGDAALFLKQAREA 213 (298)
T ss_pred CEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCC--ccHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHc
Confidence 68887766542 4566778888998876655554321 2222233333 35787777764 6666777777665
Q ss_pred CCCCceEEEeCHHHH
Q 022234 250 EQWSNSVACIGETTA 264 (300)
Q Consensus 250 ~~~~~~vv~IG~~Ta 264 (300)
+. +.+++..+....
T Consensus 214 g~-~~~~~~~~~~~~ 227 (298)
T cd06268 214 GL-KVPIVGGDGAAA 227 (298)
T ss_pred CC-CCcEEecCccCC
Confidence 42 566666544433
No 274
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=46.67 E-value=52 Score=29.76 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=55.3
Q ss_pred CCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-h----cCCccEEEEeChHHHHHHHHHHHHcCCCCceEE
Q 022234 57 RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-N----DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 131 (300)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~----~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~ 131 (300)
++-+.+.+..+.|+++|..++.+.=-.... .+.+.+.| . ...+|. |+||..+...++.... +..++|
T Consensus 24 ~~ipga~e~l~~L~~~g~~~iflTNn~~~s---~~~~~~~L~~~~~~~~~~~~-i~TS~~at~~~l~~~~----~~~kv~ 95 (269)
T COG0647 24 EAIPGAAEALKRLKAAGKPVIFLTNNSTRS---REVVAARLSSLGGVDVTPDD-IVTSGDATADYLAKQK----PGKKVY 95 (269)
T ss_pred ccCchHHHHHHHHHHcCCeEEEEeCCCCCC---HHHHHHHHHhhcCCCCCHHH-eecHHHHHHHHHHhhC----CCCEEE
Confidence 344678899999999999988765433322 22233333 1 234444 5699998888776422 247999
Q ss_pred EEccchH-HHHHHHhhccCCCcccc
Q 022234 132 VVGAGTA-SIFEEVIQSSKCSLDVA 155 (300)
Q Consensus 132 aVG~~Ta-~~L~~~~~~~~~G~~~~ 155 (300)
.+|..-- +.|+.. |+...
T Consensus 96 viG~~~l~~~l~~~------G~~~~ 114 (269)
T COG0647 96 VIGEEGLKEELEGA------GFELV 114 (269)
T ss_pred EECCcchHHHHHhC------CcEEe
Confidence 9998765 677777 87653
No 275
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=46.64 E-value=17 Score=32.94 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=37.2
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 51 ~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
|||||+...+ =...+.+.|.+.|++++...-- -....+.+.+.+.+....+|+||.+-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-~~dl~d~~~~~~~~~~~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS-DLDLTDPEAVAKLLEAFKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-CS-TTSHHHHHHHHHHH--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-hcCCCCHHHHHHHHHHhCCCeEeccce
Confidence 6899999876 3578899999999887766222 112334556666665557899999853
No 276
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=46.52 E-value=89 Score=30.25 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=41.2
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeee-----e-Ee----eeC--CCchhHHHhhhcCCccEEEEeCh
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----I-QH----AQG--PDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~-----i-~~----~~~--~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
.|+||+.....+...++..|++.|.+++.+|. . .. ... .|.+.+.++......|.||.++-
T Consensus 2 ~~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~~Npg~~~~a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~~d 74 (435)
T PRK06395 2 TMKVMLVGSGGREDAIARAIKRSGAILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPD 74 (435)
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCeEEEEECCCChhhhhcccceeecCCCCHHHHHHHHHHhCCCEEEECCC
Confidence 37999999988888999999999987777765 1 11 111 23344444444567898887653
No 277
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=46.43 E-value=18 Score=27.19 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=31.3
Q ss_pred EEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 257 ACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 257 v~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
=.||+.+++-+..+|++.+-.-..-+++.|.+.+.+..+
T Consensus 18 P~IG~a~a~DL~~LGi~s~~~L~g~dP~~Ly~~lc~~~G 56 (93)
T PF11731_consen 18 PNIGKATAEDLRLLGIRSPADLKGRDPEELYERLCALTG 56 (93)
T ss_pred CCccHHHHHHHHHcCCCCHHHHhCCCHHHHHHHHHHHcC
Confidence 369999999999999987555566788899888876543
No 278
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=46.32 E-value=2e+02 Score=25.03 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=40.3
Q ss_pred HHHHc--CCCCEEEEEChHHHHHHH-HHhccc--CCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHH
Q 022234 221 VLKQA--LSIPVVAVASPSAVRSWV-NLISDT--EQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVD 288 (300)
Q Consensus 221 ~~~~l--~~~d~IvftS~s~v~~~~-~~~~~~--~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ 288 (300)
.++++ .+.|+++.....-..+++ -.+... +..++.+-+-.+.-.+.+++.|+..++.|+.-....+.+
T Consensus 58 ~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~ 130 (225)
T COG0569 58 VLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLAR 130 (225)
T ss_pred HHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHH
Confidence 44443 578887777777444443 333322 223445556788889999999977766555433333333
No 279
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=46.02 E-value=1.3e+02 Score=25.98 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=25.6
Q ss_pred CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEE
Q 022234 175 KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 175 ~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~ 206 (300)
..|++++++ ||+....-|...|.++|+.|..+
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~ 92 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGARVYSV 92 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEE
Confidence 367887777 77777777888999999999766
No 280
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=45.84 E-value=75 Score=30.39 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=28.4
Q ss_pred CCCCCCeEEEeCCCC-----------------chHHHHHHHHhCCCCEEEee
Q 022234 46 ASNSNPKVVVTRERG-----------------KNGKLIKALAKHRIDCLELP 80 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-----------------~~~~l~~~L~~~G~~v~~~P 80 (300)
+++.|++||||.... ....+++.|..+|++|..+-
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~ 232 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLIT 232 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 468899999997632 46789999999999987643
No 281
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=45.75 E-value=1.3e+02 Score=28.04 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=40.5
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhcc
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISD 248 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~ 248 (300)
++-+.+.|++.|..-.++..|......-...++.+++ ++.|.|+-.+.-++..+.+....
T Consensus 48 ~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq~~~s~~~~ 109 (322)
T COG2984 48 REGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQALVSATKT 109 (322)
T ss_pred HHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHHHHHHHhcCC
Confidence 6678889999998533444444433333333444444 57899999999999999888764
No 282
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=45.73 E-value=54 Score=27.12 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=34.5
Q ss_pred HHHHHhcccCCCCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeee
Q 022234 164 KILASELPKNGKKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 164 e~L~~~L~~~~~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
+.+++.+.+...+|+++++. .+..+...+.+.|++.|+.+..+..|+.
T Consensus 120 ~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 120 DRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred HHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeec
Confidence 34555555555567777665 4444477889999999999998888875
No 283
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=45.68 E-value=1.2e+02 Score=25.85 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=44.2
Q ss_pred CeEEEe-CCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHH-------HHHHHHHH
Q 022234 51 PKVVVT-RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGS-------VFLEAWKE 122 (300)
Q Consensus 51 ~~Vlit-R~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~-------~~~~~l~~ 122 (300)
++|+|. -.......+++.|+++|+++..++ +.. .+.+||.|+++.+..-. .+.+.+++
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~--------~~~------~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~ 66 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITS--------DPE------EILDADGIVLPGVGAFGAAMENLSPLRDVILE 66 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEEC--------CHH------HHccCCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 355555 334456799999999999877663 111 23579999998731111 11222222
Q ss_pred cCCCCceEEEEccchHHHHH
Q 022234 123 AGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 123 ~~~~~~~i~aVG~~Ta~~L~ 142 (300)
....+.++++|.-.- +.|-
T Consensus 67 ~~~~~~PilgIC~G~-q~l~ 85 (200)
T PRK13143 67 AARSGKPFLGICLGM-QLLF 85 (200)
T ss_pred HHHcCCCEEEECHHH-HHHh
Confidence 212367888887764 3443
No 284
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=45.23 E-value=2.6e+02 Score=26.05 Aligned_cols=217 Identities=20% Similarity=0.247 Sum_probs=93.9
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeC----C----CchhHHHhhhcCCccEEEEeChHHHHHHHHHHHH
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG----P----DTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKE 122 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~----~----~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~ 122 (300)
--|++... ..+.++..+... ...+|+..++.. + ..++..+.+...-.++.+-++..+.+.+. +
T Consensus 69 d~Vlv~GD--~~~~la~alaA~---~~~ipv~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t~~~~~~L~----~ 139 (346)
T PF02350_consen 69 DAVLVLGD--RNEALAAALAAF---YLNIPVAHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPTEEARERLL----Q 139 (346)
T ss_dssp SEEEEETT--SHHHHHHHHHHH---HTT-EEEEES-----S-TTSSTTHHHHHHHHHHH-SEEEESSHHHHHHHH----H
T ss_pred CEEEEEcC--CchHHHHHHHHH---HhCCCEEEecCCCCccccCCCCchhhhhhhhhhhhhhhccCCHHHHHHHH----h
Confidence 33555543 356666666533 223455555543 1 22333222212334555556666666555 3
Q ss_pred cCCCCceEEEEccchHHHHHHHhhccCC-----Cc---------cccccCCCC-c-H---HHHHHhcccCCC-CCCEEEE
Q 022234 123 AGTPNVRIGVVGAGTASIFEEVIQSSKC-----SL---------DVAFSPSKA-T-G---KILASELPKNGK-KKCTVLY 182 (300)
Q Consensus 123 ~~~~~~~i~aVG~~Ta~~L~~~~~~~~~-----G~---------~~~~~p~~~-~-~---e~L~~~L~~~~~-~~~~vL~ 182 (300)
.|.+..+|+++|.-.-..+......... ++ -+.+.|... + . +.+.+.|..... .+-++++
T Consensus 140 ~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~ 219 (346)
T PF02350_consen 140 EGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIF 219 (346)
T ss_dssp TT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEE
T ss_pred cCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEE
Confidence 5556779999999888887655111100 11 001112211 1 1 122222221111 2346666
Q ss_pred EcC--CCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEe-
Q 022234 183 PAS--AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI- 259 (300)
Q Consensus 183 ~rg--~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~I- 259 (300)
+.. ..++..+.+.|.+.. .+.+++... ..+.+..+...++|+-=|+ ++. +... ..+++++.|
T Consensus 220 ~~hn~p~~~~~i~~~l~~~~----~v~~~~~l~----~~~~l~ll~~a~~vvgdSs-GI~---eEa~---~lg~P~v~iR 284 (346)
T PF02350_consen 220 PLHNNPRGSDIIIEKLKKYD----NVRLIEPLG----YEEYLSLLKNADLVVGDSS-GIQ---EEAP---SLGKPVVNIR 284 (346)
T ss_dssp E--S-HHHHHHHHHHHTT-T----TEEEE--------HHHHHHHHHHESEEEESSH-HHH---HHGG---GGT--EEECS
T ss_pred EecCCchHHHHHHHHhcccC----CEEEECCCC----HHHHHHHHhcceEEEEcCc-cHH---HHHH---HhCCeEEEec
Confidence 666 445556655555431 233333211 1123333334444444444 443 1111 136799999
Q ss_pred --CHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 260 --GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 260 --G~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
|++-. .+..|..+. +. .+.+.+.++|.+.+..
T Consensus 285 ~~geRqe--~r~~~~nvl-v~--~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 285 DSGERQE--GRERGSNVL-VG--TDPEAIIQAIEKALSD 318 (346)
T ss_dssp SS-S-HH--HHHTTSEEE-ET--SSHHHHHHHHHHHHH-
T ss_pred CCCCCHH--HHhhcceEE-eC--CCHHHHHHHHHHHHhC
Confidence 88744 455576653 33 7899999999988854
No 285
>PRK09739 hypothetical protein; Provisional
Probab=45.17 E-value=52 Score=27.90 Aligned_cols=58 Identities=14% Similarity=0.257 Sum_probs=38.7
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeeeCC------------------CCcHHHHHHcCCCCEEEEECh-------HHHHHHHH
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTEPVH------------------HVDQTVLKQALSIPVVAVASP-------SAVRSWVN 244 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~~~~------------------~~~~~~~~~l~~~d~IvftS~-------s~v~~~~~ 244 (300)
+.+.+.|++.|.+++.+.+|+....+ ....+..+.+...|.|||.+| ..++.|++
T Consensus 24 ~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD 103 (199)
T PRK09739 24 EAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLWWYSFPAMLKGYID 103 (199)
T ss_pred HHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchhhhcchHHHHHHHH
Confidence 35666778888888888888753210 011233444568899999987 67888888
Q ss_pred Hhc
Q 022234 245 LIS 247 (300)
Q Consensus 245 ~~~ 247 (300)
.+-
T Consensus 104 ~v~ 106 (199)
T PRK09739 104 RVW 106 (199)
T ss_pred HHc
Confidence 753
No 286
>PLN00016 RNA-binding protein; Provisional
Probab=45.08 E-value=2.6e+02 Score=26.05 Aligned_cols=89 Identities=16% Similarity=0.071 Sum_probs=51.2
Q ss_pred cCCCCCCCeEEEe----CCCC-chHHHHHHHHhCCCCEEEeeeeEe---------------------eeC-CCchhHHHh
Q 022234 44 ASASNSNPKVVVT----RERG-KNGKLIKALAKHRIDCLELPLIQH---------------------AQG-PDTDRLSSV 96 (300)
Q Consensus 44 ~~~~l~g~~Vlit----R~~~-~~~~l~~~L~~~G~~v~~~P~i~~---------------------~~~-~~~~~l~~~ 96 (300)
+......++|||| ...+ -...+++.|.+.|++|..+---.. +.. .|...+...
T Consensus 46 ~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~ 125 (378)
T PLN00016 46 AAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSK 125 (378)
T ss_pred hhcccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhh
Confidence 4455667899999 7654 457899999999998875432110 000 022223333
Q ss_pred hhcCCccEEEEeCh---HHHHHHHHHHHHcCCCCceEEEEc
Q 022234 97 LNDTIFDWIIITSP---EAGSVFLEAWKEAGTPNVRIGVVG 134 (300)
Q Consensus 97 l~~~~~d~ivFTS~---~av~~~~~~l~~~~~~~~~i~aVG 134 (300)
+....+|.||-+.. .+++.+++.+.+.+.+ +++.++
T Consensus 126 ~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvk--r~V~~S 164 (378)
T PLN00016 126 VAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLK--QFLFCS 164 (378)
T ss_pred hccCCccEEEeCCCCCHHHHHHHHHHHHHcCCC--EEEEEc
Confidence 33346888887642 3456677776655432 444444
No 287
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=44.99 E-value=1.6e+02 Score=25.55 Aligned_cols=80 Identities=19% Similarity=0.074 Sum_probs=48.9
Q ss_pred CeEEEeCCCCch--HHHHHHHH-hCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH------------HH
Q 022234 51 PKVVVTRERGKN--GKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG------------SV 115 (300)
Q Consensus 51 ~~VlitR~~~~~--~~l~~~L~-~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av------------~~ 115 (300)
++|+|.+-...+ .++...|+ ..|+++..++... . .+..+|.||+...... ..
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~-------~------~l~~~D~lvipGG~~~~d~l~~~~~~~~~~ 67 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE-------T------DLDGVDAVVLPGGFSYGDYLRCGAIAAFSP 67 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc-------C------CCCCCCEEEECCCCchhhhhccchhhhchH
Confidence 356766665544 45789998 8899887765411 0 1356888888875321 12
Q ss_pred HHHHHHHcCCCCceEEEEccchHHHHHHH
Q 022234 116 FLEAWKEAGTPNVRIGVVGAGTASIFEEV 144 (300)
Q Consensus 116 ~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 144 (300)
+.+.+++....+.++++|..+. ..|-+.
T Consensus 68 ~~~~l~~~~~~g~~ilgIC~G~-qlLa~~ 95 (219)
T PRK03619 68 IMKAVKEFAEKGKPVLGICNGF-QILTEA 95 (219)
T ss_pred HHHHHHHHHHCCCEEEEECHHH-HHHHHc
Confidence 2222333222477899998876 566766
No 288
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=44.97 E-value=2.7e+02 Score=26.09 Aligned_cols=228 Identities=17% Similarity=0.114 Sum_probs=115.4
Q ss_pred CCCeEEEeCCCC----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-
Q 022234 49 SNPKVVVTRERG----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA- 123 (300)
Q Consensus 49 ~g~~VlitR~~~----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~- 123 (300)
..++|-+.-... +..++.+.|++.|+++..++... ...+++. +..+.+..+..++..-..+.+.+++.
T Consensus 151 ~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~----~s~~~i~---~~~~A~~nlv~~~~~g~~~a~~l~~~~ 223 (399)
T cd00316 151 EPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGG----TTVEELR---ELGNAKLNLVLCRESGLYLARYLEEKY 223 (399)
T ss_pred CCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCC----CCHHHHH---hhccCcEEEEecHhHHHHHHHHHHHHh
Confidence 344555543322 56899999999999999887651 1223332 35677777778886666666777654
Q ss_pred CCCCceEEEEc-cchHHHHHHHhhccCCCccccccCCCCc--HHHHHHhccc--CCCCCCEEEEEcCCCChhHHHHHHHh
Q 022234 124 GTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPK--NGKKKCTVLYPASAKASNEIEEGLSN 198 (300)
Q Consensus 124 ~~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~--~~~~~~~vL~~rg~~~~~~L~~~L~~ 198 (300)
+.+-....-+| ..|.+.+++.. ..-|.. .-.+.... -+.+.+.+.+ ....|+++++..+....-.+...|.+
T Consensus 224 g~p~~~~~p~G~~~t~~~l~~i~--~~~g~~-~~~~~~i~~~~~~~~~~~~~~~~~l~g~~~~i~~~~~~~~~~~~~l~e 300 (399)
T cd00316 224 GIPYILINPIGLEATDAFLRKLA--ELFGIE-KEVPEVIARERARLLDALADYHEYLGGKKVAIFGDGDLLLALARFLLE 300 (399)
T ss_pred CCCeEEeCCcCHHHHHHHHHHHH--HHhCCC-cchHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCcHHHHHHHHHHH
Confidence 33222222455 34566666551 111420 00111000 0112222222 11257898887766556667889999
Q ss_pred CCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEE--EChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEE
Q 022234 199 RGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAV--ASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY 276 (300)
Q Consensus 199 ~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~Ivf--tS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~ 276 (300)
.|..+..+..+...+.. .++ ...+......++ .....+.. .+.+. +..++.-+......+++.|...+.
T Consensus 301 ~G~~v~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~d~~~~~~---~~~~~---~pdl~ig~~~~~~~~~~~~ip~~~ 371 (399)
T cd00316 301 LGMEVVAAGTTFGHKAD--YER-REELLGEGTEVVDDGDLEELEE---LIREL---KPDLIIGGSKGRYIAKKLGIPLVR 371 (399)
T ss_pred CCCEEEEEEeCCCCHHH--HHH-HHHhcCCCCEEEeCCCHHHHHH---HHhhc---CCCEEEECCcHHHHHHHhCCCEEE
Confidence 99888666554332221 111 111222222223 33333333 33321 234444455556666667776432
Q ss_pred ec------CCCCHHHHHHHHHHHHH
Q 022234 277 YP------THPGLEGWVDSILEALR 295 (300)
Q Consensus 277 v~------~~p~~~~l~~ai~~~~~ 295 (300)
.. .....++..+.+.+..+
T Consensus 372 ~~~p~~~~~~~Gy~G~~~l~~~i~~ 396 (399)
T cd00316 372 IGFPIHRRPYVGYEGALNLAEEIAN 396 (399)
T ss_pred cCCccccCCccchhhHHHHHHHHHH
Confidence 11 11255666666665543
No 289
>PRK05569 flavodoxin; Provisional
Probab=44.96 E-value=1.1e+02 Score=23.99 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=34.1
Q ss_pred cCCCCEEEEEChH---------HHHHHHHHhcccCCCCceEEEeC----------HHHHHHHHHcCCCe---EEecCCCC
Q 022234 225 ALSIPVVAVASPS---------AVRSWVNLISDTEQWSNSVACIG----------ETTASAAKRLGLKN---VYYPTHPG 282 (300)
Q Consensus 225 l~~~d~IvftS~s---------~v~~~~~~~~~~~~~~~~vv~IG----------~~Ta~~l~~~G~~~---~~v~~~p~ 282 (300)
+.+.|.|+|-||. .+..|++.+......+.+++.+| ....+.+++.|++. +.+...|+
T Consensus 46 ~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~ 125 (141)
T PRK05569 46 VLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAVNESPN 125 (141)
T ss_pred HhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEEccCCC
Confidence 4578999999974 36677776653322233333321 12345566678864 23344566
Q ss_pred HHHH
Q 022234 283 LEGW 286 (300)
Q Consensus 283 ~~~l 286 (300)
.+.+
T Consensus 126 ~~~~ 129 (141)
T PRK05569 126 KEEL 129 (141)
T ss_pred HHHH
Confidence 5444
No 290
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=44.84 E-value=40 Score=27.96 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCChh----HHHHHHHhCCCeeEEEEee
Q 022234 175 KKKCTVLYPASAKASN----EIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 175 ~~~~~vL~~rg~~~~~----~L~~~L~~~G~~v~~~~vY 209 (300)
...++|++++|...+. .+...|.++|++|.-+.++
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~ 61 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVG 61 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEe
Confidence 3568999999987533 5667899999887664443
No 291
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=44.79 E-value=2.7e+02 Score=28.18 Aligned_cols=101 Identities=10% Similarity=0.028 Sum_probs=59.6
Q ss_pred CEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee------------eeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHH
Q 022234 178 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT------------TEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWV 243 (300)
Q Consensus 178 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~------------~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~ 243 (300)
.++++.+...-...+.+.|.++|.++.-++.=. ...-+-...+.+++. .+.++++.+.++...+..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~ 480 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK 480 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence 467777666656677788888887664443200 001111122344443 477888888777655543
Q ss_pred --HHhcccCCCCceEE--EeCHHHHHHHHHcCCCeEEecCC
Q 022234 244 --NLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTH 280 (300)
Q Consensus 244 --~~~~~~~~~~~~vv--~IG~~Ta~~l~~~G~~~~~v~~~ 280 (300)
...++.. .+.+++ +-.+.-++.+++.|.+.+ +++.
T Consensus 481 i~~~~r~~~-p~~~IiaRa~~~~~~~~L~~~Ga~~v-v~e~ 519 (601)
T PRK03659 481 IVELCQQHF-PHLHILARARGRVEAHELLQAGVTQF-SRET 519 (601)
T ss_pred HHHHHHHHC-CCCeEEEEeCCHHHHHHHHhCCCCEE-EccH
Confidence 3333322 345555 579999999999999864 4553
No 292
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=44.69 E-value=78 Score=26.39 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
..+.|++|+|....+- ...+++.|.++|+.+..+-- ..+++.+. +..+|.||-+++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r-------~~~~l~~~--l~~aDiVIsat~~~ 98 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS-------KTKNLKEH--TKQADIVIVAVGKP 98 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC-------CchhHHHH--HhhCCEEEEcCCCC
Confidence 4688999999998764 55699999999986543221 12233332 46788888776664
No 293
>PRK07206 hypothetical protein; Provisional
Probab=44.68 E-value=2.2e+02 Score=26.86 Aligned_cols=67 Identities=19% Similarity=0.093 Sum_probs=40.9
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeE-----------------eeeCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-----------------HAQGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~-----------------~~~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
.++||+.-+......+++.++++|+.++.+-.-. .....+.+.+.+.++....|.|+-.+-..
T Consensus 2 ~k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~~~e~~ 81 (416)
T PRK07206 2 MKKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIAGAESG 81 (416)
T ss_pred CCeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEECCCcc
Confidence 3678888877667789999999999887542110 01111223333444445788888776555
Q ss_pred HHHH
Q 022234 113 GSVF 116 (300)
Q Consensus 113 v~~~ 116 (300)
+...
T Consensus 82 ~~~~ 85 (416)
T PRK07206 82 VELA 85 (416)
T ss_pred HHHH
Confidence 5543
No 294
>PRK11249 katE hydroperoxidase II; Provisional
Probab=44.54 E-value=2.6e+02 Score=29.28 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCCCCh----hHHHHHHHhCCCeeEEEEeeeeeeCCC------CcHHHHHHc--CCCCEEEEEChH-HHHH
Q 022234 175 KKKCTVLYPASAKAS----NEIEEGLSNRGFEVVRLNTYTTEPVHH------VDQTVLKQA--LSIPVVAVASPS-AVRS 241 (300)
Q Consensus 175 ~~~~~vL~~rg~~~~----~~L~~~L~~~G~~v~~~~vY~~~~~~~------~~~~~~~~l--~~~d~IvftS~s-~v~~ 241 (300)
..+++|.++-+++.. ..+.+.|++.|+.|.-+-.-. .+... ..+..+... ..+|+|++..+. .++.
T Consensus 595 ~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~-G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~ 673 (752)
T PRK11249 595 IKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRM-GEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIAD 673 (752)
T ss_pred ccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCC-CeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHH
Confidence 367899999887653 367788899998776654311 11110 001111111 258999998763 3443
Q ss_pred HHH------HhcccCCCCceEEEeCHHHHHHHHHcCCC----eEEecCCCCHHHHHHHHHHHHHccCC
Q 022234 242 WVN------LISDTEQWSNSVACIGETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEALREHGH 299 (300)
Q Consensus 242 ~~~------~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~----~~~v~~~p~~~~l~~ai~~~~~~~~~ 299 (300)
+.. .+.+.......|.+||.. ...|.+.|+. .-++....+.+.+++...+.+..||+
T Consensus 674 L~~d~~al~fL~eaykHgK~IAAiCaG-~~LLaaAGL~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~ 740 (752)
T PRK11249 674 LADNGDARYYLLEAYKHLKPIALAGDA-RKLKAALKLPDQGEEGLVEADSADGSFMDELLTAMAAHRV 740 (752)
T ss_pred HhhCHHHHHHHHHHHHcCCEEEEeCcc-HHHHHhcCCCCCCCCeEEecCCccHHHHHHHHHHHHhcCC
Confidence 322 111111113445555543 3566677882 22344334566666777777777664
No 295
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=44.47 E-value=4e+02 Score=27.94 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=118.2
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC----hHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS----PEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS----~~av~~~~~~l 120 (300)
..+.|++|++.-... ....+.+.|+..|+.+....- ... +....||.++..- ......+...+
T Consensus 532 ~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~--------~~~----l~~~~~d~il~~~~~~~~~~~~~~~~~~ 599 (919)
T PRK11107 532 DCLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPT--------LSQ----LPEAHYDILLLGLPVTFREPLTMLHERL 599 (919)
T ss_pred cccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCC--------HHH----hccCCCCEEEecccCCCCCCHHHHHHHH
Confidence 557899999886654 457888999999988764321 111 2234677766532 12233333333
Q ss_pred HHcCC-CCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC--------------CCCCCEEEEEcC
Q 022234 121 KEAGT-PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--------------GKKKCTVLYPAS 185 (300)
Q Consensus 121 ~~~~~-~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~--------------~~~~~~vL~~rg 185 (300)
..... ....+++.+............. |.. .+.....+...|...+... ...+.+||++-.
T Consensus 600 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~vLivdd 675 (919)
T PRK11107 600 AKAKSMTDFLILALPCHEQVLAEQLKQD---GAD-ACLSKPLSHTRLLPALLEPCHHKQPPLLPPTDESRLPLTVMAVDD 675 (919)
T ss_pred HhhhhcCCcEEEEeCCcchhhHHHHhhC---CCc-eEECCCCCHHHHHHHHHHhhcccccccccccccccCCCeEEEEeC
Confidence 32211 2334444443333322222100 443 2344444555565555321 012357888877
Q ss_pred CCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEE----ChHHHHHHHHHhcccC-CCCceEE
Q 022234 186 AKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA----SPSAVRSWVNLISDTE-QWSNSVA 257 (300)
Q Consensus 186 ~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivft----S~s~v~~~~~~~~~~~-~~~~~vv 257 (300)
+.. +..+...|...|..|... . ...+.++.+ ..+|+|+.= -..+++ +...++... ..+++++
T Consensus 676 ~~~~~~~l~~~L~~~~~~v~~~--------~-~~~~al~~~~~~~~dlil~D~~mp~~~g~~-~~~~lr~~~~~~~~pii 745 (919)
T PRK11107 676 NPANLKLIGALLEEQVEHVVLC--------D-SGHQAVEQAKQRPFDLILMDIQMPGMDGIR-ACELIRQLPHNQNTPII 745 (919)
T ss_pred CHHHHHHHHHHHHHcCCEEEEE--------C-CHHHHHHHHHhCCCCEEEEeCCCCCCcHHH-HHHHHHhcccCCCCCEE
Confidence 654 566777888877554321 1 112222222 367877663 223333 233333321 2356777
Q ss_pred EeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 258 CIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 258 ~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
+++ ......+.+.|+.- ++....+.+.|.+.+.++...
T Consensus 746 ~lt~~~~~~~~~~~~~~G~~~-~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 746 AVTAHAMAGERERLLSAGMDD-YLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEeCCCCHHHHHHHHHcCCCe-EeeCCCCHHHHHHHHHHHccc
Confidence 663 34455667789874 566767889999998887654
No 296
>PLN02572 UDP-sulfoquinovose synthase
Probab=44.39 E-value=99 Score=29.89 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=30.3
Q ss_pred cccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 42 TSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 42 ~~~~~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
.-.+..+.+|+||||...+. ...+++.|.+.|++|+.+
T Consensus 39 ~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~ 77 (442)
T PLN02572 39 PGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIV 77 (442)
T ss_pred CCCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 33567788999999988753 468999999999988864
No 297
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=44.32 E-value=2.3e+02 Score=25.20 Aligned_cols=146 Identities=15% Similarity=0.112 Sum_probs=74.4
Q ss_pred cCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCC
Q 022234 99 DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKK 176 (300)
Q Consensus 99 ~~~~d~ivFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~ 176 (300)
....+.||..+... .......+.+ .+++++.++.... .+.... .+-....+.. ..+..+++.+.+. .
T Consensus 64 ~~~v~~vig~~~s~~~~~~~~~~~~---~~vP~v~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~--g 132 (312)
T cd06333 64 EDKVDAIIGPSTTPATMAVAPVAEE---AKTPMISLAPAAA-IVEPKR-----KWVFKTPQNDRLMAEAILADMKKR--G 132 (312)
T ss_pred hCCeEEEECCCCCHHHHHHHHHHHh---cCCCEEEccCCcc-ccCCCC-----CcEEEcCCCcHHHHHHHHHHHHHc--C
Confidence 34788888654332 2233344433 3567777765321 111110 1111112222 2345556666543 3
Q ss_pred CCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc-CCCCEEEEEC-hHHHHHHHHHhccc
Q 022234 177 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVAS-PSAVRSWVNLISDT 249 (300)
Q Consensus 177 ~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~d~IvftS-~s~v~~~~~~~~~~ 249 (300)
.+++.++.++.. ...+.+.+++.|+.+.....|.... .+....+.+.. .++|+|++.+ ...+-.+++.+.+.
T Consensus 133 ~~~vail~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~-~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~~~~l~~~ 211 (312)
T cd06333 133 VKTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTD-TSVTAQLLKIRAARPDAVLIWGSGTPAALPAKNLRER 211 (312)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEeeCCCC-cCHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHHHHc
Confidence 468888765542 2456678888998876555554211 11112222222 3689888876 44455577777665
Q ss_pred CCCCceEE
Q 022234 250 EQWSNSVA 257 (300)
Q Consensus 250 ~~~~~~vv 257 (300)
+ .+.+++
T Consensus 212 g-~~~p~~ 218 (312)
T cd06333 212 G-YKGPIY 218 (312)
T ss_pred C-CCCCEE
Confidence 4 345555
No 298
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=43.96 E-value=2.7e+02 Score=25.84 Aligned_cols=171 Identities=9% Similarity=0.092 Sum_probs=89.0
Q ss_pred CeEEEeCCCCchHHHH-HHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh-HHHHHHHHHHHHcCCCCc
Q 022234 51 PKVVVTRERGKNGKLI-KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP-EAGSVFLEAWKEAGTPNV 128 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~-~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~-~av~~~~~~l~~~~~~~~ 128 (300)
|+|++...++...++. +.++++|+++...+. +.+ ++... ...++|.+++.+. .--+.+++.+.+. ++
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~--~~~~~d~ii~~~~~~~~~~~l~~~~~~---~L 70 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKE----LLS--SATVD--QLKDYDGVTTMQFGKLENDVYPKLESY---GI 70 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCC----CCC--HHHHH--HhCCCCEEEEecCCCCCHHHHHhhhhc---Cc
Confidence 6788876665444444 556777766655442 221 22212 3567898876432 2223333444322 33
Q ss_pred eEEE---Eccch--HHHHHHHhhccCCCccccccCCCCcHHHHHHh-----------cc-------c----C-------C
Q 022234 129 RIGV---VGAGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----------LP-------K----N-------G 174 (300)
Q Consensus 129 ~i~a---VG~~T--a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----------L~-------~----~-------~ 174 (300)
|+++ +|-.. .+++++. |+.+..+|. ++++..++. +. . + .
T Consensus 71 k~I~~~~~G~d~id~~~~~~~------gI~v~n~~~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~ 143 (330)
T PRK12480 71 KQIAQRTAGFDMYDLDLAKKH------NIVISNVPS-YSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKP 143 (330)
T ss_pred eEEEecccccchhhHHHHHHC------CCEEEeCCC-CChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccc
Confidence 3332 33332 2345666 888776654 232222211 00 0 0 1
Q ss_pred CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCC--CCcHHHHHHcCCCCEEEEEChHHH
Q 022234 175 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH--HVDQTVLKQALSIPVVAVASPSAV 239 (300)
Q Consensus 175 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~--~~~~~~~~~l~~~d~IvftS~s~v 239 (300)
..|+++.+++...-...+...|...|.+|..+..+...... .....+.+.+.+.|+|++.-|.+.
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~ 210 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANK 210 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcH
Confidence 25678888876666667888999999776544433221111 000112233467899999888775
No 299
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=43.96 E-value=1.3e+02 Score=22.40 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=20.0
Q ss_pred CEEEEEcCCCC------hhHHHHHHHhCCCee
Q 022234 178 CTVLYPASAKA------SNEIEEGLSNRGFEV 203 (300)
Q Consensus 178 ~~vL~~rg~~~------~~~L~~~L~~~G~~v 203 (300)
.++|+.||.+- ...+.+.|+++|.++
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~ 34 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPV 34 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeE
Confidence 47999999986 445667888899764
No 300
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=43.92 E-value=1.9e+02 Score=26.52 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=26.9
Q ss_pred CceEEEeC-HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 253 SNSVACIG-ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 253 ~~~vv~IG-~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
++++++.. ......+-..|..-.++ +.-+.++++++|.+.+..++
T Consensus 281 G~Pvv~s~~~~g~~eiv~~~~~G~lv-~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 281 GIPCISSDCMSGPRDIIKPGLNGELY-TPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred CCCEEEeCCCCChHHHccCCCceEEE-CCCCHHHHHHHHHHHHhCcc
Confidence 56666654 22222233334443344 33599999999999887765
No 301
>PRK05568 flavodoxin; Provisional
Probab=43.88 E-value=69 Score=25.24 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=40.0
Q ss_pred EEEeCCCCchHHHHH----HHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH---------HHHHHHHH
Q 022234 53 VVVTRERGKNGKLIK----ALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE---------AGSVFLEA 119 (300)
Q Consensus 53 VlitR~~~~~~~l~~----~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~---------av~~~~~~ 119 (300)
|+.....+..+.+++ .+++.|.++..+++- .. +.. ++.++|.|+|-||. .+..|++.
T Consensus 6 IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~---~~-~~~------~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~ 75 (142)
T PRK05568 6 IIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVS---EA-SVD------DVKGADVVALGSPAMGDEVLEEGEMEPFVES 75 (142)
T ss_pred EEEECCCchHHHHHHHHHHHHHHCCCeEEEEECC---CC-CHH------HHHhCCEEEEECCccCcccccchhHHHHHHH
Confidence 444444444445444 444557665544432 21 111 24589999999974 36666666
Q ss_pred HHHcCCCCceEEEEcc
Q 022234 120 WKEAGTPNVRIGVVGA 135 (300)
Q Consensus 120 l~~~~~~~~~i~aVG~ 135 (300)
+... .++.+++++|.
T Consensus 76 ~~~~-~~~k~~~~f~t 90 (142)
T PRK05568 76 ISSL-VKGKKLVLFGS 90 (142)
T ss_pred hhhh-hCCCEEEEEEc
Confidence 5432 34667777776
No 302
>PRK05670 anthranilate synthase component II; Provisional
Probab=43.73 E-value=1.9e+02 Score=24.13 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=52.1
Q ss_pred CCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe----ChHHHHHHHHHHHHcCCCCceEEE
Q 022234 57 RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT----SPEAGSVFLEAWKEAGTPNVRIGV 132 (300)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT----S~~av~~~~~~l~~~~~~~~~i~a 132 (300)
-...-...+.+.|+++|+++..+|..... .+.+ ....+|.||++ |+.......+.+... ..+.+++.
T Consensus 7 ~~d~f~~~i~~~l~~~g~~~~v~~~~~~~----~~~~----~~~~~dglIlsgGpg~~~d~~~~~~~l~~~-~~~~PvLG 77 (189)
T PRK05670 7 NYDSFTYNLVQYLGELGAEVVVYRNDEIT----LEEI----EALNPDAIVLSPGPGTPAEAGISLELIREF-AGKVPILG 77 (189)
T ss_pred CCCchHHHHHHHHHHCCCcEEEEECCCCC----HHHH----HhCCCCEEEEcCCCCChHHcchHHHHHHHh-cCCCCEEE
Confidence 34456778999999999999888864321 1111 12248999997 554443344434332 24678888
Q ss_pred EccchHHHHHHHhhccCCCcccc
Q 022234 133 VGAGTASIFEEVIQSSKCSLDVA 155 (300)
Q Consensus 133 VG~~Ta~~L~~~~~~~~~G~~~~ 155 (300)
|.-.-.-..... |-++.
T Consensus 78 IClG~Qlla~al------Gg~v~ 94 (189)
T PRK05670 78 VCLGHQAIGEAF------GGKVV 94 (189)
T ss_pred ECHHHHHHHHHh------CCEEE
Confidence 888755555555 76653
No 303
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=43.59 E-value=72 Score=28.75 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=40.1
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeee-----CCCchhHHHhhh-cCCccEEEEeChH
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ-----GPDTDRLSSVLN-DTIFDWIIITSPE 111 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~-----~~~~~~l~~~l~-~~~~d~ivFTS~~ 111 (300)
-.|.+|+++|+.-.+ ....+...|+.++.++.-.... ..+.+.+.+.++ ..+...|++|+++
T Consensus 97 ~~gd~Vlv~~~~h~s--~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~ 164 (294)
T cd00615 97 GPGDKILIDRNCHKS--VINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPT 164 (294)
T ss_pred CCCCEEEEeCCchHH--HHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCC
Confidence 458899999987533 4556777899988887632211 124556666653 2457788888764
No 304
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=43.55 E-value=2.6e+02 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.031 Sum_probs=16.1
Q ss_pred cCCccEEEEeChHHHHHHHHH
Q 022234 99 DTIFDWIIITSPEAGSVFLEA 119 (300)
Q Consensus 99 ~~~~d~ivFTS~~av~~~~~~ 119 (300)
....|.++++|....+.+.+.
T Consensus 142 ~~~ad~vi~~S~~~~~~~~~~ 162 (388)
T TIGR02149 142 IEAADRVIAVSGGMREDILKY 162 (388)
T ss_pred HhhCCEEEEccHHHHHHHHHH
Confidence 456899999999877776653
No 305
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=43.00 E-value=1.8e+02 Score=26.29 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=40.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCC--CCEEEeeee------E------eeeCC-Cc---hhHHHhhhcCCccEEEEeChH
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHR--IDCLELPLI------Q------HAQGP-DT---DRLSSVLNDTIFDWIIITSPE 111 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G--~~v~~~P~i------~------~~~~~-~~---~~l~~~l~~~~~d~ivFTS~~ 111 (300)
.++||||...... .+++.|++.| +.++.+-.- . ..|.. +. +.+.+.+.....|+|+-++-.
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~d~~~~~p~~~~~~~~~~l~~~~~~~~id~ii~~~d~ 79 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPALYFADKFYVVPKVTDPNYIDRLLDICKKEKIDLLIPLIDP 79 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchhhHhccCcEecCCCCChhHHHHHHHHHHHhCCCEEEECCcH
Confidence 3789999886554 8889999995 888765211 1 11111 11 122233344678888877765
Q ss_pred HHHHHHH
Q 022234 112 AGSVFLE 118 (300)
Q Consensus 112 av~~~~~ 118 (300)
.+..+..
T Consensus 80 ~~~~~a~ 86 (326)
T PRK12767 80 ELPLLAQ 86 (326)
T ss_pred HHHHHHH
Confidence 6554443
No 306
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=42.93 E-value=2.1e+02 Score=25.95 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=42.3
Q ss_pred CCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhc--CCccEE--EEeChHHHHHHHHHHHH
Q 022234 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLND--TIFDWI--IITSPEAGSVFLEAWKE 122 (300)
Q Consensus 48 l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~--~~~d~i--vFTS~~av~~~~~~l~~ 122 (300)
+.|++|+||..... ...+++.|.++|++|+.+-- .....+++...+.. ....++ =+++..+++.+++.+.+
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACR----NLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46899999987653 46889999999988765421 00011112122211 122222 25888999988887654
Q ss_pred c
Q 022234 123 A 123 (300)
Q Consensus 123 ~ 123 (300)
.
T Consensus 80 ~ 80 (322)
T PRK07453 80 L 80 (322)
T ss_pred h
Confidence 3
No 307
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=42.84 E-value=93 Score=26.96 Aligned_cols=53 Identities=13% Similarity=0.084 Sum_probs=41.5
Q ss_pred cCCCCEEEEEChHHHHHHHHHhcccC---CCCceEEEeCHHHHHHHHHcCCCeEEe
Q 022234 225 ALSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNVYY 277 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~~~~~~~~---~~~~~vv~IG~~Ta~~l~~~G~~~~~v 277 (300)
+.+-+.|.+-|++++..+.+.+.+.. ..++++++-+..++..+.+.|++++..
T Consensus 13 I~~g~~I~ldsGST~~~l~~~L~~~~~~~~~~itvVTnS~~~a~~l~~~~i~vi~l 68 (213)
T cd01398 13 VEDGMVIGLGTGSTVAYFIEALGERVREEGLNIVGVPTSFQTEELARELGIPLTDL 68 (213)
T ss_pred CCCCCEEEECchHHHHHHHHHHHHhhhccCCCEEEEeCcHHHHHHHHhCCCeEEeC
Confidence 45778999999999999999886531 136888999999999888878875443
No 308
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=42.65 E-value=1.3e+02 Score=26.15 Aligned_cols=80 Identities=20% Similarity=0.148 Sum_probs=49.2
Q ss_pred CeEEEeCCCCc--hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH------------HHH
Q 022234 51 PKVVVTRERGK--NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG------------SVF 116 (300)
Q Consensus 51 ~~VlitR~~~~--~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av------------~~~ 116 (300)
|+|+|.+-... ..++.+.|++.|+++..+|.- +. .+..+|.||+...... ..+
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~------~~-------~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~ 67 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYE------DG-------SLPDYDGVVLPGGFSYGDYLRAGAIAAASPI 67 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecC------CC-------CCCCCCEEEECCCCcccccccccchhcchHH
Confidence 46777776543 257899999999999887531 10 1346888888875321 112
Q ss_pred HHHHHHcCCCCceEEEEccchHHHHHHH
Q 022234 117 LEAWKEAGTPNVRIGVVGAGTASIFEEV 144 (300)
Q Consensus 117 ~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 144 (300)
.+.+.+....+.+++.|.-.. +.|-+.
T Consensus 68 ~~~l~~~~~~g~pvlgIC~G~-QlLa~~ 94 (227)
T TIGR01737 68 MQEVREFAEKGVPVLGICNGF-QILVEA 94 (227)
T ss_pred HHHHHHHHHcCCEEEEECHHH-HHHHHc
Confidence 222333222467888888865 456655
No 309
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=42.63 E-value=3.2e+02 Score=26.30 Aligned_cols=205 Identities=16% Similarity=0.111 Sum_probs=100.3
Q ss_pred CeEEEeCC--CCchHHHHHHHHhCCCCEE-EeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCC
Q 022234 51 PKVVVTRE--RGKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPN 127 (300)
Q Consensus 51 ~~VlitR~--~~~~~~l~~~L~~~G~~v~-~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~ 127 (300)
.+|.+... .....++.+.|++.|+++. .+|- ....++. ....-..++..++..- ...+.+++.+.+-
T Consensus 167 ~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~------~~~~d~~---~~~~~~~~~~~~~~~~-~~A~~L~~~GiP~ 236 (427)
T PRK02842 167 PSLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPA------RRFTELP---AIGPGTVVALAQPFLS-DTARALRERGAKV 236 (427)
T ss_pred CcEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCC------ccHHHHh---hcCcCcEEEEeCHHHH-HHHHHHHHcCCcc
Confidence 44554432 2334789999999999986 5552 1122221 2223444555677654 3556665544322
Q ss_pred ceE-EEEc-cchHHHHHHHhhccCCCccccccCCCC--cHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHh-CC
Q 022234 128 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSN-RG 200 (300)
Q Consensus 128 ~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~--~~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~-~G 200 (300)
... +-+| ..|.+.|++.. .+-|......-... .-..+.+.+... ...|+++.+..+..-.-.+...|.+ .|
T Consensus 237 ~~~~~P~G~~~T~~~L~~la--~~~g~~~~~~~~~~~~er~~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~eelG 314 (427)
T PRK02842 237 LTAPFPLGPEGTRAWLEAAA--AAFGIDPDGLEEREAPAWERARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRECG 314 (427)
T ss_pred ccCCCCcChHHHHHHHHHHH--HHhCcCHhHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHhCC
Confidence 111 2255 35666666652 11143321000000 011222233322 1368899888766556668889988 99
Q ss_pred CeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCe
Q 022234 201 FEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 201 ~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
+.+..+.+-. ......++.++.+.. ++.+...+. ...+.+.+.+. +.-++.-|...+..+.+.|+..
T Consensus 315 m~~v~v~t~~--~~~~~~~~~~~~l~~-~~~v~~~~D-~~~l~~~i~~~---~pDllig~~~~~~pl~r~GfP~ 381 (427)
T PRK02842 315 MELVEVGTPY--LNRRFLAAELALLPD-GVRIVEGQD-VERQLDRIRAL---RPDLVVCGLGLANPLEAEGITT 381 (427)
T ss_pred CEEEEeCCCC--CCHHHHHHHHHhccC-CCEEEECCC-HHHHHHHHHHc---CCCEEEccCccCCchhhcCCce
Confidence 9885544311 111111222333322 444444332 33333444332 2334444445666788889875
No 310
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=42.49 E-value=1.7e+02 Score=23.00 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=31.4
Q ss_pred CCCEEEEEChHHH-H------HHHHHhcccCCCCceEEEeCHHHHHHHHHcCC---C-eEEecCCCCHHHHHHHHHHHHH
Q 022234 227 SIPVVAVASPSAV-R------SWVNLISDTEQWSNSVACIGETTASAAKRLGL---K-NVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 227 ~~d~IvftS~s~v-~------~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~---~-~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
.+|++++.+.... . .+.+.+.+......++++|+.-+. .+.+.|+ . -++..+.++. ...+.+.+.++
T Consensus 62 ~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~-~La~aGll~~~~gv~~~~~~~~-~~~~~~~~~~~ 139 (142)
T cd03132 62 LFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSD-LLEAAGIPLEDPGVVTADDVKD-VFTDRFIDALA 139 (142)
T ss_pred hcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHH-HHHHcCCCCCCCcEEEecCcch-HHHHHHHHHHH
Confidence 5788888876432 1 122222221112445544443332 3444565 1 2344443333 23555555555
Q ss_pred ccC
Q 022234 296 EHG 298 (300)
Q Consensus 296 ~~~ 298 (300)
.||
T Consensus 140 ~~r 142 (142)
T cd03132 140 LHR 142 (142)
T ss_pred hcC
Confidence 443
No 311
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=42.40 E-value=40 Score=28.57 Aligned_cols=70 Identities=11% Similarity=0.215 Sum_probs=44.6
Q ss_pred HHHHHhC-CCCEEEeeeeEeeeCCC--ch-------hHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEcc
Q 022234 66 IKALAKH-RIDCLELPLIQHAQGPD--TD-------RLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 66 ~~~L~~~-G~~v~~~P~i~~~~~~~--~~-------~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
-..|.+. |..+..--++++-.... .. .+...+....++|++||....++..+..+ ++....+|+
T Consensus 71 E~~l~~~~g~~v~R~~IvEvGnLAs~~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~rl------gl~~~~La~ 144 (179)
T PF12261_consen 71 EQLLSRRFGRPVSRSQIVEVGNLASFSPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRRL------GLPPTVLAD 144 (179)
T ss_pred HHHHHhhcCCCcchhheeEeechhhcCcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHc------CCCceeccc
Confidence 3344443 55555566666654421 11 11122245789999999999999999854 456777788
Q ss_pred chHHHH
Q 022234 136 GTASIF 141 (300)
Q Consensus 136 ~Ta~~L 141 (300)
+..+.|
T Consensus 145 Ad~~rl 150 (179)
T PF12261_consen 145 ADPSRL 150 (179)
T ss_pred cCHhHc
Confidence 777777
No 312
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=42.40 E-value=2.6e+02 Score=25.24 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=51.4
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEE-E
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVA-V 233 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Iv-f 233 (300)
.+..+++.+... +-+++.++..+. ....+.+.+++.|+.|.....|.......+....++.+ .+.|+|+ +
T Consensus 147 ~~~a~~~~~~~~--~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~ 224 (348)
T cd06350 147 QALAIVALLKHF--GWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVF 224 (348)
T ss_pred HHHHHHHHHHHC--CCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEE
Confidence 456677666543 235776665443 24678888999998876655554321111222233333 3557655 4
Q ss_pred EChHHHHHHHHHhcccCC
Q 022234 234 ASPSAVRSWVNLISDTEQ 251 (300)
Q Consensus 234 tS~s~v~~~~~~~~~~~~ 251 (300)
.++..+..++..+.+.+.
T Consensus 225 ~~~~~~~~~~~~a~~~g~ 242 (348)
T cd06350 225 GDEDDALRLFCEAYKLGM 242 (348)
T ss_pred eCcHHHHHHHHHHHHhCC
Confidence 567778888888777654
No 313
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=42.37 E-value=67 Score=30.13 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHH----HHHcCCCCEEEEE
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTV----LKQALSIPVVAVA 234 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~----~~~l~~~d~Ivft 234 (300)
.++++|+++..+-.......|.++|+. .+.+..+........+. +.....+|+|+..
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~--~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYS--RITFCSRQQLTLPYRTVVREELSFQDPYDVIFFG 233 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCC--EEEEEcCCccccchhhhhhhhhhcccCCCEEEEc
Confidence 678999999988888888899999853 23333332111111111 1223588999984
No 314
>PLN02409 serine--glyoxylate aminotransaminase
Probab=42.35 E-value=73 Score=30.20 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=42.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhc---CCccEEEEeCh
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLND---TIFDWIIITSP 110 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~---~~~d~ivFTS~ 110 (300)
.|.+|+++.+..-...+...++.+|+++..+|.-.-. ..+.+.+.+.+.. .+...|++++.
T Consensus 83 ~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~-~~~~~~l~~~l~~~~~~~~k~v~~~~~ 146 (401)
T PLN02409 83 PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQ-GADLDILKSKLRQDTNHKIKAVCVVHN 146 (401)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCC-CCCHHHHHHHHhhCcCCCccEEEEEee
Confidence 5789999997665566778888899999998863211 1245666666643 36888888765
No 315
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=42.27 E-value=95 Score=28.37 Aligned_cols=179 Identities=15% Similarity=0.086 Sum_probs=90.2
Q ss_pred CccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhh---cc----CCCccc---cc-cCCC-------Cc
Q 022234 101 IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQ---SS----KCSLDV---AF-SPSK-------AT 162 (300)
Q Consensus 101 ~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~---~~----~~G~~~---~~-~p~~-------~~ 162 (300)
..|.++.+|....+.+. +.+.+.-+++++|............ .. ..|+.. .+ .... -.
T Consensus 141 ~ad~~~~~s~~~~~~l~----~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~ 216 (363)
T cd03786 141 LSDLHFAPTEEARRNLL----QEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQ 216 (363)
T ss_pred HhhhccCCCHHHHHHHH----HcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHH
Confidence 45777766766655544 3455667899999664333221000 00 003221 11 1111 12
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHH
Q 022234 163 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSW 242 (300)
Q Consensus 163 ~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~ 242 (300)
.+.|++.+......+-.++++.....+..+.+.+.+.+..-..+.. ..... ..++...+...|+++.-|+ ++ .
T Consensus 217 ~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~---~~~~~-~~~~~~l~~~ad~~v~~Sg-gi--~ 289 (363)
T cd03786 217 LEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLL---ISPLG-YLYFLLLLKNADLVLTDSG-GI--Q 289 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEE---ECCcC-HHHHHHHHHcCcEEEEcCc-cH--H
Confidence 3456666654321124566666666677888776665430011111 11111 1122222346888887776 32 1
Q ss_pred HHHhcccCCCCceEEEeCHHH-HHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 243 VNLISDTEQWSNSVACIGETT-ASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 243 ~~~~~~~~~~~~~vv~IG~~T-a~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
.+.+ ..++++++++..+ ...+.+.|+.. ... .+.+++.++|.+.+..+
T Consensus 290 ~Ea~----~~g~PvI~~~~~~~~~~~~~~g~~~--~~~-~~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 290 EEAS----FLGVPVLNLRDRTERPETVESGTNV--LVG-TDPEAILAAIEKLLSDE 338 (363)
T ss_pred hhhh----hcCCCEEeeCCCCccchhhheeeEE--ecC-CCHHHHHHHHHHHhcCc
Confidence 1211 1357899998754 33455566543 222 36899999999887654
No 316
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.24 E-value=2.7e+02 Score=25.42 Aligned_cols=146 Identities=19% Similarity=0.150 Sum_probs=76.3
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh----hcCCccEEEEeChHHH----HHHHHHHHH-cCCCCceEEEEcc
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL----NDTIFDWIIITSPEAG----SVFLEAWKE-AGTPNVRIGVVGA 135 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l----~~~~~d~ivFTS~~av----~~~~~~l~~-~~~~~~~i~aVG~ 135 (300)
-.+..++.|+++..+-+-+. ...+++.+.+ .+...|.|+.--|--- ...++.+.. ...|++. +
T Consensus 52 k~k~a~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~-----~ 123 (285)
T PRK14191 52 KIKACERVGMDSDLHTLQEN---TTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFH-----P 123 (285)
T ss_pred HHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccC-----h
Confidence 34556677887765444221 1223444444 3567899999877321 112221111 1112222 2
Q ss_pred chHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC--CCCCEEEEEcCC-CChhHHHHHHHhCCCeeEEEEeeeee
Q 022234 136 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASA-KASNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 136 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~rg~-~~~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.-...|- . |-. .+.|- |+.+.++.|..+. ..|++++++... ....-+...|.++|+.|+.+.-.+
T Consensus 124 ~n~g~l~-~------g~~-~~~Pc--Tp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-- 191 (285)
T PRK14191 124 LNIGKLC-S------QLD-GFVPA--TPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-- 191 (285)
T ss_pred hhHHHHh-c------CCC-CCCCC--cHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--
Confidence 2111111 1 322 24443 5777777776543 368899888544 556668888888999986553211
Q ss_pred eCCCCcHHHHHHcCCCCEEEEECh
Q 022234 213 PVHHVDQTVLKQALSIPVVAVASP 236 (300)
Q Consensus 213 ~~~~~~~~~~~~l~~~d~IvftS~ 236 (300)
..+.+.+.+.|+|+-.-+
T Consensus 192 ------~~l~~~~~~ADIvV~AvG 209 (285)
T PRK14191 192 ------KDLSFYTQNADIVCVGVG 209 (285)
T ss_pred ------HHHHHHHHhCCEEEEecC
Confidence 112223457787776653
No 317
>PLN02409 serine--glyoxylate aminotransaminase
Probab=42.20 E-value=1.4e+02 Score=28.19 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=8.5
Q ss_pred ceEEEeCHHHHHHHHH
Q 022234 254 NSVACIGETTASAAKR 269 (300)
Q Consensus 254 ~~vv~IG~~Ta~~l~~ 269 (300)
+-++++.+...+.+..
T Consensus 209 ~G~l~~~~~~~~~~~~ 224 (401)
T PLN02409 209 LGIVCASPKALEASKT 224 (401)
T ss_pred cceeEECHHHHHHHhc
Confidence 3455566665555543
No 318
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=42.17 E-value=2.5e+02 Score=25.07 Aligned_cols=76 Identities=16% Similarity=0.079 Sum_probs=43.8
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC-hHHHHHHHHHHHHc
Q 022234 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS-PEAGSVFLEAWKEA 123 (300)
Q Consensus 50 g~~VlitR~~~~-----~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS-~~av~~~~~~l~~~ 123 (300)
.++|.+...... ...+.+.+++.|++++..-.+... ..|....-..+...+.|.|++.+ ......|.+++.+.
T Consensus 137 ~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~ 215 (312)
T cd06346 137 YKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEG-KSSYSSEVAAAAAGGPDALVVIGYPETGSGILRSAYEQ 215 (312)
T ss_pred CCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCC-CCCHHHHHHHHHhcCCCEEEEecccchHHHHHHHHHHc
Confidence 567766654432 346677888889888753222211 12333222223456788887764 44566677777777
Q ss_pred CCC
Q 022234 124 GTP 126 (300)
Q Consensus 124 ~~~ 126 (300)
+..
T Consensus 216 G~~ 218 (312)
T cd06346 216 GLF 218 (312)
T ss_pred CCC
Confidence 763
No 319
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=42.11 E-value=3.2e+02 Score=26.18 Aligned_cols=205 Identities=17% Similarity=0.117 Sum_probs=100.3
Q ss_pred CeEEEeCCCC--chHHHHHHHHhCCCCEEE-eeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCC
Q 022234 51 PKVVVTRERG--KNGKLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPN 127 (300)
Q Consensus 51 ~~VlitR~~~--~~~~l~~~L~~~G~~v~~-~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~ 127 (300)
++|.+...-. +..++.+.|++.|+++.. +|- ...+++ -..+....-+-.++..- ...+.|++.+.+-
T Consensus 160 ~~vniiG~~~~~d~~ei~~lL~~~Gl~~~~~l~~------~~~~el---~~~~~A~~~i~~~~~~~-~~a~~Le~~GvP~ 229 (416)
T cd01980 160 PSLALLGEMFPADPVAIGSVLERMGLAAVPVVPT------REWREL---YAAGDAAAVAALHPFYT-ATIRELEEAGRPI 229 (416)
T ss_pred CeEEEEccCCCCCHHHHHHHHHHcCCceeeEeCC------CCHHHH---hhcccCcEEEEeChhHH-HHHHHHHHcCCce
Confidence 3555543222 346999999999999975 441 222333 24566667777777655 3366676543221
Q ss_pred ceEEEEcc-chHHHHHHHhhccCCCccccccCCCC---cHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCee
Q 022234 128 VRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA---TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 203 (300)
Q Consensus 128 ~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~---~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v 203 (300)
....=+|. .|.+.+++.. .+-|.++.-. +.. ...-+...+..+..-++|+.+..+...--.+...|.+.|.+|
T Consensus 230 ~~~~piG~~~td~~l~~la--~~~g~~~~~~-e~~~~~e~~~~~~~ld~~~~l~gkv~v~g~~~~~~~la~~L~elGmev 306 (416)
T cd01980 230 VSGAPVGADGTAAWLEAVG--EALGLDMDQV-RKVANEEKAAAKGAIRAFSPIKGRVLVSGYEGNELLVARLLIESGAEV 306 (416)
T ss_pred ecCCCcCchHHHHHHHHHH--HHhCcCchhH-HHHHHHHHHHHHHHHhhHHhhCceEEEECCCchhHHHHHHHHHcCCEE
Confidence 11123443 4556665552 1125432100 111 111122222222111246666666666777999999999998
Q ss_pred EEEEe-eeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 204 VRLNT-YTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 204 ~~~~v-Y~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
..+.+ |........ ....+......+ .....+......+.+. +.-++.-+......++++|+..+
T Consensus 307 v~~~t~~~~~~~~~~---~~~~l~~~~~~v-~~~~~~~~~~~~~~~~---~pDl~Ig~s~~~~~a~~~giP~~ 372 (416)
T cd01980 307 PYVSTSIPKTSLSAP---DYEWLSALGVEV-RYRKSLEDDIAAVEEY---RPDLAIGTTPLVQYAKEKGIPAL 372 (416)
T ss_pred EEEecCCCChhhhHH---HHHHHHhcCCcc-ccCCCHHHHHHHHhhc---CCCEEEeCChhhHHHHHhCCCEE
Confidence 77666 332222211 111121112112 2223333333333322 23344444555667778888653
No 320
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=41.90 E-value=2.2e+02 Score=26.81 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=43.4
Q ss_pred cHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEECh
Q 022234 162 TGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 236 (300)
Q Consensus 162 ~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~ 236 (300)
++.+.++.|..+. ..|++++++ |++....-|..-|.++|+.|+.+.-.+. ...+ ...+.|+|+-.-+
T Consensus 197 Tp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~-----nl~~---~~~~ADIvIsAvG 266 (345)
T PLN02897 197 TPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTK-----DPEQ---ITRKADIVIAAAG 266 (345)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCC-----CHHH---HHhhCCEEEEccC
Confidence 5777887776543 368887777 7777777788889999998865543221 1112 2346777776543
No 321
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=41.81 E-value=1.5e+02 Score=27.28 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=23.7
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCee
Q 022234 163 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 203 (300)
Q Consensus 163 ~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v 203 (300)
+-.++.+|.+....+++|..+.++. +.++|.+.|+.+
T Consensus 92 a~~~a~ylk~~~~~~k~Vyvig~~g----i~~eL~~aG~~~ 128 (306)
T KOG2882|consen 92 AYAIADYLKKRKPFGKKVYVIGEEG----IREELDEAGFEY 128 (306)
T ss_pred HHHHHHHHHHhCcCCCeEEEecchh----hhHHHHHcCcee
Confidence 4456666754433567888888776 455577788544
No 322
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=41.74 E-value=1.3e+02 Score=26.51 Aligned_cols=75 Identities=12% Similarity=0.028 Sum_probs=46.3
Q ss_pred chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH------------HH-HHHHHHHcCCCC
Q 022234 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG------------SV-FLEAWKEAGTPN 127 (300)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av------------~~-~~~~l~~~~~~~ 127 (300)
...++...|++.|+++..++.-.... . ...+.+||.||+...... +. +.+.+++....+
T Consensus 11 ~~~~~~~al~~aG~~v~~v~~~~~~~--~------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g 82 (238)
T cd01740 11 CDRDMAYAFELAGFEAEDVWHNDLLA--G------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERG 82 (238)
T ss_pred CHHHHHHHHHHcCCCEEEEeccCCcc--c------cCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCC
Confidence 34588899999999999887643211 1 012457899998876321 11 233333332347
Q ss_pred ceEEEEccchHHHHHHH
Q 022234 128 VRIGVVGAGTASIFEEV 144 (300)
Q Consensus 128 ~~i~aVG~~Ta~~L~~~ 144 (300)
.+++.|.... +.|-+.
T Consensus 83 ~pvlGIC~G~-QlL~~~ 98 (238)
T cd01740 83 GLVLGICNGF-QILVEL 98 (238)
T ss_pred CeEEEECcHH-HHHHHc
Confidence 7898888654 677776
No 323
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=41.68 E-value=1.8e+02 Score=25.34 Aligned_cols=77 Identities=16% Similarity=0.054 Sum_probs=45.3
Q ss_pred eCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcC--CccEEEEeChHHHHH-HHHHHHHcCCCCce
Q 022234 56 TRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDT--IFDWIIITSPEAGSV-FLEAWKEAGTPNVR 129 (300)
Q Consensus 56 tR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~--~~d~ivFTS~~av~~-~~~~l~~~~~~~~~ 129 (300)
.++-+...++.+.|+++|..+..+.- .... ...+.+.+ ... .+| .|+||...... +...+.+.+.+..+
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN-~~~~---~~~~~~~L~~~gl~~~~~~-~Ii~s~~~~~~~l~~~~~~~~~~~~~ 97 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSN-SPRN---IFSLHKTLKSLGINADLPE-MIISSGEIAVQMILESKKRFDIRNGI 97 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeC-CCCC---hHHHHHHHHHCCCCccccc-eEEccHHHHHHHHHhhhhhccCCCce
Confidence 34556789999999999998877655 2221 11221223 232 244 56677765443 43333444444567
Q ss_pred EEEEccch
Q 022234 130 IGVVGAGT 137 (300)
Q Consensus 130 i~aVG~~T 137 (300)
++.||...
T Consensus 98 ~~~vGd~~ 105 (242)
T TIGR01459 98 IYLLGHLE 105 (242)
T ss_pred EEEeCCcc
Confidence 89999865
No 324
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=41.52 E-value=1.2e+02 Score=27.46 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=29.7
Q ss_pred EEEEChHHHHHHHHHhcccCCCCceEEEeCHHHH-HHHHHcCCCe
Q 022234 231 VAVASPSAVRSWVNLISDTEQWSNSVACIGETTA-SAAKRLGLKN 274 (300)
Q Consensus 231 IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta-~~l~~~G~~~ 274 (300)
-++||..+...++..... ..+++.||+.-- +.++.+|+..
T Consensus 73 ~i~TS~~at~~~l~~~~~----~~kv~viG~~~l~~~l~~~G~~~ 113 (269)
T COG0647 73 DIVTSGDATADYLAKQKP----GKKVYVIGEEGLKEELEGAGFEL 113 (269)
T ss_pred HeecHHHHHHHHHHhhCC----CCEEEEECCcchHHHHHhCCcEE
Confidence 578888888877765432 368999987655 7888899864
No 325
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=41.49 E-value=3e+02 Score=25.67 Aligned_cols=170 Identities=11% Similarity=0.078 Sum_probs=86.8
Q ss_pred cCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchH----------HHHHHHhhccCCCcccc-----ccCCC---
Q 022234 99 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA----------SIFEEVIQSSKCSLDVA-----FSPSK--- 160 (300)
Q Consensus 99 ~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta----------~~L~~~~~~~~~G~~~~-----~~p~~--- 160 (300)
....|.++..|....+.+. +.+.+.-++.++|.... ..+++.+ |+..+ +++..
T Consensus 148 ~~~~d~~~~~s~~~~~~l~----~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~-----gl~~~~~~il~~Gg~~g~ 218 (382)
T PLN02605 148 HKGVTRCFCPSEEVAKRAL----KRGLEPSQIRVYGLPIRPSFARAVRPKDELRREL-----GMDEDLPAVLLMGGGEGM 218 (382)
T ss_pred cCCCCEEEECCHHHHHHHH----HcCCCHHHEEEECcccCHhhccCCCCHHHHHHHc-----CCCCCCcEEEEECCCccc
Confidence 4578899988877665544 33444445566664441 2334333 55421 22221
Q ss_pred CcHHHHHHhcccCC------CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEE
Q 022234 161 ATGKILASELPKNG------KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 234 (300)
Q Consensus 161 ~~~e~L~~~L~~~~------~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~Ivft 234 (300)
...+.+++.+.... ..+-++++++|.. ..+.+.|++..... .+.+... .+ . +.+.+...|+++..
T Consensus 219 ~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~--~~~~~~L~~~~~~~-~v~~~G~--~~-~---~~~l~~aaDv~V~~ 289 (382)
T PLN02605 219 GPLEETARALGDSLYDKNLGKPIGQVVVICGRN--KKLQSKLESRDWKI-PVKVRGF--VT-N---MEEWMGACDCIITK 289 (382)
T ss_pred ccHHHHHHHHHHhhccccccCCCceEEEEECCC--HHHHHHHHhhcccC-CeEEEec--cc-c---HHHHHHhCCEEEEC
Confidence 12344555554321 1234677788865 24455565432111 1111111 11 2 22223467888864
Q ss_pred ChHHHHHHHHHhcccCCCCceEEEeC------HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 235 SPSAVRSWVNLISDTEQWSNSVACIG------ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 235 S~s~v~~~~~~~~~~~~~~~~vv~IG------~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
|... ...+.+. .++++++.. ...++.+.+.|.-. .+ .+.+++.++|.+.+..
T Consensus 290 ~g~~--ti~EAma----~g~PvI~~~~~pgqe~gn~~~i~~~g~g~--~~--~~~~~la~~i~~ll~~ 347 (382)
T PLN02605 290 AGPG--TIAEALI----RGLPIILNGYIPGQEEGNVPYVVDNGFGA--FS--ESPKEIARIVAEWFGD 347 (382)
T ss_pred CCcc--hHHHHHH----cCCCEEEecCCCccchhhHHHHHhCCcee--ec--CCHHHHHHHHHHHHcC
Confidence 4322 2334333 256777775 23456677777643 22 5888999998887754
No 326
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=41.49 E-value=77 Score=29.08 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=41.2
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
..|.+|+++.+......+...++..|+++..+|+-. ....+.+.+.+.+...+.+.|+++++
T Consensus 72 ~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~i~~~~~~~v~i~~~ 133 (356)
T cd06451 72 EPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPW-GEAVSPEEIAEALEQHDIKAVTLTHN 133 (356)
T ss_pred CCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCC-CCCCCHHHHHHHHhccCCCEEEEecc
Confidence 358899999865444346677888999999998632 11224556666553335678888776
No 327
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=41.46 E-value=54 Score=24.21 Aligned_cols=55 Identities=9% Similarity=0.190 Sum_probs=39.9
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
-..|++....+++..++..|+..++.. | +++.. +.+.+....+..+|+|.++++.
T Consensus 23 ~~~Vl~FE~edDA~RYa~lLEAqd~~~---p--~Ve~i-d~~~i~~fC~~~gy~~~iv~~g 77 (86)
T PF11360_consen 23 RNVVLMFEDEDDAERYAGLLEAQDFPD---P--TVEEI-DPEEIEEFCRSAGYEYEIVPPG 77 (86)
T ss_pred CCEEEEEccHHHHHHHHHHHHhcCCCC---C--CeEEE-CHHHHHHHHHHCCceEEEECCC
Confidence 456788888889999999999988732 3 44443 3345555556788999999876
No 328
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=41.23 E-value=3.4e+02 Score=26.29 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=29.7
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEE
Q 022234 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~ 78 (300)
..+|+.|.+|+..-+-. +...+...|.+.|++|..
T Consensus 42 ~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~ 77 (425)
T PRK05476 42 AEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRW 77 (425)
T ss_pred ccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEE
Confidence 45999999999887754 678999999999999864
No 329
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=41.23 E-value=1.8e+02 Score=25.26 Aligned_cols=24 Identities=21% Similarity=0.016 Sum_probs=15.2
Q ss_pred ccEEEEeChHHHHHHHHHHHHcCC
Q 022234 102 FDWIIITSPEAGSVFLEAWKEAGT 125 (300)
Q Consensus 102 ~d~ivFTS~~av~~~~~~l~~~~~ 125 (300)
...|..||.|...++.......+.
T Consensus 51 ~~vv~~ssGN~g~alA~~a~~~g~ 74 (244)
T cd00640 51 GVIIESTGGNTGIALAAAAARLGL 74 (244)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCC
Confidence 445556666777777766665543
No 330
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=41.07 E-value=1.3e+02 Score=32.60 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=59.5
Q ss_pred CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 022234 127 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 127 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 206 (300)
.+-+-.||..|....+-. .|=..++...-.+ ++ .+. .++++|++.|..|...|.+.|++.|.+|..+
T Consensus 856 t~i~rvVGkgT~~Ls~l~-----~Gd~v~v~GPLG~--pF--~i~----~~k~vLLVgGGVGiApLak~Lk~~G~~V~~~ 922 (1028)
T PRK06567 856 SFIVFEVGKSTSLCKTLS-----ENEKVVLMGPTGS--PL--EIP----QNKKIVIVDFEVGNIGLLKVLKENNNEVIFV 922 (1028)
T ss_pred EEEEEEEChHHHHHhcCC-----CCCEEEEEcccCC--CC--CCC----CCCeEEEEEccccHHHHHHHHHHCCCeEEEE
Confidence 345667899886654422 1433333322111 11 011 2368999999999888999999999999888
Q ss_pred EeeeeeeCCCCcHHHHHHcCCCCE-EEEEChHHHHHHHHHhc
Q 022234 207 NTYTTEPVHHVDQTVLKQALSIPV-VAVASPSAVRSWVNLIS 247 (300)
Q Consensus 207 ~vY~~~~~~~~~~~~~~~l~~~d~-IvftS~s~v~~~~~~~~ 247 (300)
. |- +... ..+..+|. |+..|..-.+.+....+
T Consensus 923 ~-~~----d~~~----~~l~~vD~vi~iGs~~mm~~~~~~~~ 955 (1028)
T PRK06567 923 T-YP----DIKI----RKLVSVDIVIINASPEIIEELQSLKN 955 (1028)
T ss_pred E-cC----CCCc----ccchhccEEEEeCCHHHHHHHHHHHh
Confidence 8 73 1111 12456774 56666666666655553
No 331
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=40.98 E-value=2.3e+02 Score=25.58 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEE-
Q 022234 163 GKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA- 234 (300)
Q Consensus 163 ~e~L~~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivft- 234 (300)
...+++++.+.. ..+++.++..+.. ...+.+.|++.|.++.....|... ..+....+..+ .+.|+|++.
T Consensus 122 ~~~~~~~~~~~~-~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~d~~~~v~~l~~~~~d~v~~~~ 198 (340)
T cd06349 122 APLLADYAVKDL-GFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPG--EKDFRPTITRLRDANPDAIILIS 198 (340)
T ss_pred HHHHHHHHHHHc-CCcEEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCC--CCcHHHHHHHHHhcCCCEEEEcc
Q ss_pred ChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcC
Q 022234 235 SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLG 271 (300)
Q Consensus 235 S~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G 271 (300)
++..+..|++.+...+ ++.+++..+......+-+.+
T Consensus 199 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 234 (340)
T cd06349 199 YYNDGAPIARQARAVG-LDIPVVASSSVYSPKFIELG 234 (340)
T ss_pred ccchHHHHHHHHHHcC-CCCcEEccCCcCCHHHHHHh
No 332
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=40.98 E-value=2.4e+02 Score=25.97 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=49.4
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe-ChHHHHHHHHHHHHc
Q 022234 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT-SPEAGSVFLEAWKEA 123 (300)
Q Consensus 50 g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT-S~~av~~~~~~l~~~ 123 (300)
.++|.+..... ....+.+.+++.|++++....+... ..|....-..+...+.|.|++. .......|++++.+.
T Consensus 140 ~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~~~~~ 218 (351)
T cd06334 140 GKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPG-PNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEAKRV 218 (351)
T ss_pred CCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCC-cccHHHHHHHHHHcCCCEEEEecccchHHHHHHHHHHc
Confidence 67777765542 2456778888999988754433221 1243332223345678888664 555777788888888
Q ss_pred CCCCceEEE
Q 022234 124 GTPNVRIGV 132 (300)
Q Consensus 124 ~~~~~~i~a 132 (300)
+++ .+++.
T Consensus 219 G~~-~~~~~ 226 (351)
T cd06334 219 GLD-DKFIG 226 (351)
T ss_pred CCC-ceEEE
Confidence 773 44543
No 333
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=40.98 E-value=96 Score=27.32 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=40.3
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccCC--CCceEEEeCHHHHHHHHHcCCCe
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTEQ--WSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~~--~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
.+--+|=+-+.+++.+|++.+.+... .++..++.+..|+..|+++|+.+
T Consensus 19 ~~gmviGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS~~t~~l~~~~GI~v 69 (227)
T COG0120 19 KDGMVIGLGTGSTAAYFIEALGRRVKGELDIGGVPTSFQTEELARELGIPV 69 (227)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHhhccCccEEEEeCCHHHHHHHHHcCCee
Confidence 45567889999999999999974111 36788999999999999999975
No 334
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=40.90 E-value=1.9e+02 Score=25.78 Aligned_cols=135 Identities=11% Similarity=0.025 Sum_probs=74.9
Q ss_pred CCCCCeEEEeCCCCch---HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEE---EeChHHHHHHHHHH
Q 022234 47 SNSNPKVVVTRERGKN---GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWII---ITSPEAGSVFLEAW 120 (300)
Q Consensus 47 ~l~g~~VlitR~~~~~---~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~iv---FTS~~av~~~~~~l 120 (300)
.|.||++||+.-.+.. =-+++.|.++|++....-.-+ .. ...+....+.-..++|+ .|+-..++..|+.+
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e--~l--~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i 78 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE--RL--EKRVEELAEELGSDLVLPCDVTNDESIDALFATI 78 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH--HH--HHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHH
Confidence 5789999999776543 468999999999986532111 11 11222211111123333 47888999999998
Q ss_pred HHcCC-CCceEEEEccchHHHHHHHhhc-cCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcC
Q 022234 121 KEAGT-PNVRIGVVGAGTASIFEEVIQS-SKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS 185 (300)
Q Consensus 121 ~~~~~-~~~~i~aVG~~Ta~~L~~~~~~-~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg 185 (300)
++.+- -+.-+-|||=+-++.|...+-. .-.|+.....-+.|+--.|++........|..++-+..
T Consensus 79 ~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtY 145 (259)
T COG0623 79 KKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTY 145 (259)
T ss_pred HHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEe
Confidence 87642 2677788888877766533100 00022222222344444555555554445566554443
No 335
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=40.83 E-value=2.4e+02 Score=27.04 Aligned_cols=193 Identities=16% Similarity=0.151 Sum_probs=99.9
Q ss_pred CchHHHHHHHHhCCCCEEEeeeeE----------eeeCC-CchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCC
Q 022234 60 GKNGKLIKALAKHRIDCLELPLIQ----------HAQGP-DTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPN 127 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~i~----------~~~~~-~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~ 127 (300)
.+-.++.+.|++.|+++..+|=+. ..+.. .-..++++-+.++...-+..++.+ ..+.+.|++. +.+-
T Consensus 171 ~D~~eik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~ggt~leei~~~~~A~lniv~~~~~-~~~a~~Lee~~GiP~ 249 (417)
T cd01966 171 GDVEELKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGGTTLEDIRQMGRSAATLAIGESM-RKAAEALEERTGVPY 249 (417)
T ss_pred HHHHHHHHHHHHcCCceEEecCcccccCCCCCCCccccCCCCCcHHHHHhhccCeEEEEECHHH-HHHHHHHHHHHCCCe
Confidence 355899999999999998887432 11110 001233332445555555567654 5666666653 3221
Q ss_pred ceE-EEEcc-chHHHHHHHhhccCCCccccccCCCCc--HHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 022234 128 VRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 201 (300)
Q Consensus 128 ~~i-~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~ 201 (300)
... .-+|- .|.+.|++.. .+-|... |.... -+.+.+.+.+. ...|+|+.+..+..-.-.+...|.+.|.
T Consensus 250 ~~~~~p~G~~~T~~~L~~la--~~~g~~~---~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~l~~~L~ElG~ 324 (417)
T cd01966 250 YVFPSLTGLEAVDALIATLA--KLSGRPV---PEKIRRQRAQLQDAMLDGHFYLGGKRVAIALEPDLLAALSSFLAEMGA 324 (417)
T ss_pred eecCCCcchHHHHHHHHHHH--HHHCCCc---CHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCHHHHHHHHHHHHHCCC
Confidence 111 12554 6777777662 1114332 32211 12234444321 1257898888766556778889999999
Q ss_pred eeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCe
Q 022234 202 EVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 202 ~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
.+..+.+... .+ . .+.+ ..+.++......++. .+. +..++.-|..-...++++|...
T Consensus 325 ~~~~~~~~~~--~~----~-~~~~-~~~~~~~~D~~~~e~---~~~-----~~dllig~s~~~~~A~~~~ip~ 381 (417)
T cd01966 325 EIVAAVATTD--SP----A-LEKL-PAEEVVVGDLEDLED---LAA-----EADLLVTNSHGRQAAERLGIPL 381 (417)
T ss_pred EEEEEEECCC--CH----H-HHhC-cccceEeCCHHHHHH---hcc-----cCCEEEEcchhHHHHHhcCCCE
Confidence 8865554322 11 1 2223 234455555555553 222 2334444444445556666653
No 336
>PRK03094 hypothetical protein; Provisional
Probab=40.60 E-value=48 Score=24.17 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=43.5
Q ss_pred CChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHH
Q 022234 187 KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASA 266 (300)
Q Consensus 187 ~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~ 266 (300)
.+-.++.+.|+++|+.|..+.-|.. ..++|+++.|.-. .-+..|+.+.
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~~~~~-------------~~~~Da~VitG~d----------------~n~mgi~d~~--- 55 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLRSEQD-------------AQGCDCCVVTGQD----------------SNVMGIADTS--- 55 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecCcccc-------------cCCcCEEEEeCCC----------------cceecccccc---
Confidence 4556799999999977755432111 2578999999721 1222232211
Q ss_pred HHHcCCCeEEecCCCCHHHHHHHHHHHH
Q 022234 267 AKRLGLKNVYYPTHPGLEGWVDSILEAL 294 (300)
Q Consensus 267 l~~~G~~~~~v~~~p~~~~l~~ai~~~~ 294 (300)
.+. +++-+..-+.+.+.+.+++.+
T Consensus 56 ---t~~-pVI~A~G~TaeEI~~~ve~r~ 79 (80)
T PRK03094 56 ---TKG-SVITASGLTADEICQQVESRL 79 (80)
T ss_pred ---cCC-cEEEcCCCCHHHHHHHHHHhh
Confidence 122 346677778888877776554
No 337
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=40.58 E-value=1.8e+02 Score=24.98 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=30.9
Q ss_pred EEEEEC--hHHHHHHHHHhcccCCCCceEEEeCH----HHHHHHHHcCCCeEE
Q 022234 230 VVAVAS--PSAVRSWVNLISDTEQWSNSVACIGE----TTASAAKRLGLKNVY 276 (300)
Q Consensus 230 ~IvftS--~s~v~~~~~~~~~~~~~~~~vv~IG~----~Ta~~l~~~G~~~~~ 276 (300)
+++|.| .+.++.+.+.+......-..++++.. ...+.+++.|+....
T Consensus 4 i~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~ 56 (200)
T PRK05647 4 IVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFV 56 (200)
T ss_pred EEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEE
Confidence 678888 89999999887664321112223343 256778889998644
No 338
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=40.48 E-value=64 Score=24.99 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=31.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHh-CCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 49 SNPKVVVTRERGKNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~-~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
.|-.|.-|.. .++.|++ .|+.+..+ ++.+....+++.+.+..+.+|.||+|+.
T Consensus 26 ~Gf~i~AT~g------Ta~~L~~~~Gi~v~~v---k~~~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 26 SRHRLVATGT------TGLLIQEATGLTVNRM---KSGPLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred cCCEEEEech------HHHHHHHhhCCcEEEE---ecCCCCchhHHHHHHHcCceeEEEEcCC
Confidence 3556655543 3456776 77776654 3211222244555667789999999965
No 339
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=40.41 E-value=1.4e+02 Score=25.83 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=39.3
Q ss_pred HHHHHHHHhC-CCCEEEeeeeEeeeCCCchhHHHhhh-cCCccEEEEeChHHHHHHHHHHHHcCCC-CceEEEEccc
Q 022234 63 GKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAG 136 (300)
Q Consensus 63 ~~l~~~L~~~-G~~v~~~P~i~~~~~~~~~~l~~~l~-~~~~d~ivFTS~~av~~~~~~l~~~~~~-~~~i~aVG~~ 136 (300)
.-+.+.++++ |.++................+.+.+. ..+.++|+..+-..+..+.+.+.+.+.. ++.++..+..
T Consensus 142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~~di~vig~d~~ 218 (275)
T cd06320 142 EGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVKNAGKQGKVLVVGTDGI 218 (275)
T ss_pred HHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECCchhHHHHHHHHHhcCCCCCeEEEecCCC
Confidence 4466677777 76654321100000000122334442 3457888888777777777777777653 4555555443
No 340
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=40.36 E-value=5e+02 Score=27.99 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeee
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.|++|+++.|....-+....+...|++| ..+|++.
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~V--tlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNV--TIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEE--EEEEecC
Confidence 5789999999888888899999999976 4667663
No 341
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=40.22 E-value=1.2e+02 Score=23.28 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=40.1
Q ss_pred CCE-EEEE-ChHHHHHHHHHhcccCCCCceEEEe--CHHHHHHHHH-cCCCeEEecCCC-CHHHHHHHHHHHHHccC
Q 022234 228 IPV-VAVA-SPSAVRSWVNLISDTEQWSNSVACI--GETTASAAKR-LGLKNVYYPTHP-GLEGWVDSILEALREHG 298 (300)
Q Consensus 228 ~d~-Ivft-S~s~v~~~~~~~~~~~~~~~~vv~I--G~~Ta~~l~~-~G~~~~~v~~~p-~~~~l~~ai~~~~~~~~ 298 (300)
... |+|| |+.+++.+.+ ++ .+.+++++ .+.+++.+.= .|+.+.+..+.. +.+.+++...+++.+.+
T Consensus 17 ak~Ivv~T~sG~ta~~isk-~R----P~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~g 88 (117)
T PF02887_consen 17 AKAIVVFTESGRTARLISK-YR----PKVPIIAVTPNESVARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKERG 88 (117)
T ss_dssp ESEEEEE-SSSHHHHHHHH-T-----TSSEEEEEESSHHHHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCchHHHHHHh-hC----CCCeEEEEcCcHHHHhhhhcccceEEEEeccccccHHHHHHHHHHHHHHcC
Confidence 444 4444 3345554444 33 24555554 6777777764 377776666666 89999999888876654
No 342
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=40.03 E-value=93 Score=27.80 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=26.9
Q ss_pred HHHHhcccCCCCCCEEEEEcCCCCh----hHHHHHHHhCCCeeEEE
Q 022234 165 ILASELPKNGKKKCTVLYPASAKAS----NEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 165 ~L~~~L~~~~~~~~~vL~~rg~~~~----~~L~~~L~~~G~~v~~~ 206 (300)
.|-+.|.+. ..+++++++++... +.+.+.|+..|+++..+
T Consensus 9 ~l~~~l~~~--~~~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~ 52 (250)
T PF13685_consen 9 KLPEILSEL--GLKKVLVVTDENTYKAAGEKVEESLKSAGIEVAVI 52 (250)
T ss_dssp GHHHHHGGG--T-SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEE
T ss_pred HHHHHHHhc--CCCcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 344455554 24799999999865 46778899999888744
No 343
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=39.99 E-value=75 Score=29.83 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=40.4
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
.|.+|+++.|.- ..+....+..|++++.+|+-. ....+.+.+.+.+...+.+.|++++++-
T Consensus 126 ~gd~Vlv~~P~y--~~y~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~~~~~~~v~l~~P~N 186 (380)
T PLN03026 126 PGDKIIDCPPTF--GMYVFDAAVNGAEVIKVPRTP-DFSLDVPRIVEAVETHKPKLLFLTSPNN 186 (380)
T ss_pred CCCEEEEcCCCh--HHHHHHHHHcCCEEEEeecCC-CCCcCHHHHHHHHhccCCcEEEEeCCCC
Confidence 577899998863 455566677899999988721 1112445555544345678999998873
No 344
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=39.95 E-value=1.4e+02 Score=28.49 Aligned_cols=47 Identities=15% Similarity=0.011 Sum_probs=24.6
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
..++|...+.....+|..||++.. .-.......+-.|..+..++++.
T Consensus 98 a~~al~~~~~a~~~pGDeVlip~P--~Y~~y~~~~~~~gg~~v~v~l~~ 144 (393)
T COG0436 98 AKEALFLAFLALLNPGDEVLIPDP--GYPSYEAAVKLAGGKPVPVPLDE 144 (393)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCC--CCcCHHHHHHhcCCEEEEEeCCc
Confidence 344444444433345566666655 23334445555666666666544
No 345
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=39.94 E-value=1.4e+02 Score=27.25 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=24.0
Q ss_pred EEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChH
Q 022234 179 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 237 (300)
Q Consensus 179 ~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s 237 (300)
++++... .-..+...++..|+++..++ +.+.+.+.+.+.+.|++++|+
T Consensus 88 ~vl~~~p--~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~~~~~~v~i~~p~ 135 (330)
T TIGR01140 88 RVLVLAP--TYSEYARAWRAAGHEVVELP---------DLDRLPAALEELDVLVLCNPN 135 (330)
T ss_pred eEEEeCC--CcHHHHHHHHHcCCEEEEeC---------CHHHHHhhcccCCEEEEeCCC
Confidence 5655532 33445566666776655543 222233333344566666653
No 346
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.70 E-value=1.7e+02 Score=25.53 Aligned_cols=84 Identities=14% Similarity=0.009 Sum_probs=49.8
Q ss_pred CCCCCeEEEeCC---CCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcC--CccEE--EEeChHHHHHHHH
Q 022234 47 SNSNPKVVVTRE---RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDT--IFDWI--IITSPEAGSVFLE 118 (300)
Q Consensus 47 ~l~g~~VlitR~---~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~--~~d~i--vFTS~~av~~~~~ 118 (300)
.+.||+++||.. .+=...+++.|.+.|++++..-. ... +.+.+.+.. ... ....+ =+++..+++.+++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r--~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 79 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYA--GER--LEKEVRELADTLEGQESLLLPCDVTSDEEITACFE 79 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecC--ccc--chHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH
Confidence 467899999996 35678999999999999875421 111 112222222 111 11111 1588999999998
Q ss_pred HHHHc-CCCCceEEEEc
Q 022234 119 AWKEA-GTPNVRIGVVG 134 (300)
Q Consensus 119 ~l~~~-~~~~~~i~aVG 134 (300)
.+.+. +.-+.-+.+.|
T Consensus 80 ~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 80 TIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHhCCCccEEEECcc
Confidence 77653 32234444444
No 347
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.68 E-value=3.3e+02 Score=27.69 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=63.8
Q ss_pred CEEEEEcCCCChhHHHHHHHhCCCeeEEEEe------------eeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHH
Q 022234 178 CTVLYPASAKASNEIEEGLSNRGFEVVRLNT------------YTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWV 243 (300)
Q Consensus 178 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v------------Y~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~ 243 (300)
+++++.+...-...+.+.|.++|+++.-++. |....-+-...+.+++. ++.+.++.+..+.-.+..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~ 480 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQ 480 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHH
Confidence 5777777666667788888888876644421 11111111122344433 477888777665444332
Q ss_pred --HHhcccCCCCceEE--EeCHHHHHHHHHcCCCeEEecCC-CCHHHHHHHHHHHH
Q 022234 244 --NLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTH-PGLEGWVDSILEAL 294 (300)
Q Consensus 244 --~~~~~~~~~~~~vv--~IG~~Ta~~l~~~G~~~~~v~~~-p~~~~l~~ai~~~~ 294 (300)
...++. ..+.+++ +-.+..+..+++.|.+.+ +.+. .+...+.+.+.+.+
T Consensus 481 i~~~ar~~-~p~~~iiaRa~d~~~~~~L~~~Gad~v-~~e~~e~sl~l~~~~L~~l 534 (621)
T PRK03562 481 LVELVKEH-FPHLQIIARARDVDHYIRLRQAGVEKP-ERETFEGALKSGRLVLESL 534 (621)
T ss_pred HHHHHHHh-CCCCeEEEEECCHHHHHHHHHCCCCEE-ehhhHhHHHHHHHHHHHHc
Confidence 333332 2344555 578888999999999864 3333 23333444444433
No 348
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=39.61 E-value=50 Score=27.42 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=36.5
Q ss_pred CccccccCCCCcHHHHHHhcccCCCC-CCEEEEEcCCCChhHHHHHHHhCCCee
Q 022234 151 SLDVAFSPSKATGKILASELPKNGKK-KCTVLYPASAKASNEIEEGLSNRGFEV 203 (300)
Q Consensus 151 G~~~~~~p~~~~~e~L~~~L~~~~~~-~~~vL~~rg~~~~~~L~~~L~~~G~~v 203 (300)
|+.+.|.+...+++..++.+...... +.+|.++.++.. +.......|+.+
T Consensus 67 gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~---iq~~~~~~GA~~ 117 (166)
T PF05991_consen 67 GIEVVFTKEGETADDYIERLVRELKNRPRQVTVVTSDRE---IQRAARGRGAKR 117 (166)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHH---HHHHHhhCCCEE
Confidence 99998888888998888887765543 578888888764 444455667554
No 349
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=39.33 E-value=90 Score=29.52 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=41.8
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHH---HHHHc--CCCCEE
Q 022234 163 GKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT---VLKQA--LSIPVV 231 (300)
Q Consensus 163 ~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~---~~~~l--~~~d~I 231 (300)
.+.|.+.+.+. ++|+|++.+... .+.+.+.|++.|+.+ .+|.........+. ..+.. .++|+|
T Consensus 17 ~~~l~~~~~~~---~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~---~~~~~v~~~p~~~~v~~~~~~~~~~~~D~I 90 (382)
T cd08187 17 ESELGKELKKY---GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEV---VELGGVEPNPRLETVREGIELCKEEKVDFI 90 (382)
T ss_pred HHHHHHHHHHh---CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeE---EEECCccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 34455555443 479999987532 357888999888654 45554433332222 22222 478987
Q ss_pred E-EEChHHHHH
Q 022234 232 A-VASPSAVRS 241 (300)
Q Consensus 232 v-ftS~s~v~~ 241 (300)
| +-..+..+.
T Consensus 91 IaiGGGS~iD~ 101 (382)
T cd08187 91 LAVGGGSVIDS 101 (382)
T ss_pred EEeCChHHHHH
Confidence 7 666665553
No 350
>PRK01355 azoreductase; Reviewed
Probab=39.29 E-value=64 Score=27.43 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=33.6
Q ss_pred HHHHHHh--CCCeeEEEEeeeeeeCC--------------CCcHHHHHHcCCCCEEEEECh-------HHHHHHHHHh
Q 022234 192 IEEGLSN--RGFEVVRLNTYTTEPVH--------------HVDQTVLKQALSIPVVAVASP-------SAVRSWVNLI 246 (300)
Q Consensus 192 L~~~L~~--~G~~v~~~~vY~~~~~~--------------~~~~~~~~~l~~~d~IvftS~-------s~v~~~~~~~ 246 (300)
+.+.+++ .|.+|+.+.+|+..... +...+..+.+...|.|||.|| ..+++|++.+
T Consensus 26 ~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv 103 (199)
T PRK01355 26 FVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDKVVISCPMTNFNVPATLKNYLDHI 103 (199)
T ss_pred HHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCEEEEEcCccccCChHHHHHHHHHH
Confidence 4455555 34777777777653310 111223344567899999998 5677777775
No 351
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=39.27 E-value=21 Score=31.72 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=30.1
Q ss_pred cCCccEEEEeChHHHHHHHHHHHHcC-CCCceEEEEccch----HHHHHHHhhccCCCccccccC
Q 022234 99 DTIFDWIIITSPEAGSVFLEAWKEAG-TPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSP 158 (300)
Q Consensus 99 ~~~~d~ivFTS~~av~~~~~~l~~~~-~~~~~i~aVG~~T----a~~L~~~~~~~~~G~~~~~~p 158 (300)
.-+.|.+||.|||++.---...++.. -.+.++++||... .+.|++. ||--.+++
T Consensus 57 ~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~------g~GYIivk 115 (276)
T PF01993_consen 57 EWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEE------GFGYIIVK 115 (276)
T ss_dssp HH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHT------T-EEEEET
T ss_pred hhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhc------CCcEEEEe
Confidence 44789999999999866333333321 1367888887765 5677776 66444443
No 352
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=39.22 E-value=55 Score=26.46 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=51.2
Q ss_pred CCCCCCeEEEe-CCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcC
Q 022234 46 ASNSNPKVVVT-RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAG 124 (300)
Q Consensus 46 ~~l~g~~Vlit-R~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~ 124 (300)
.++.|++|+|. |.......++..|.+.|+++..+.-.+ .+ +++. ....|.||-..... ..+-..|-+
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t----~~---l~~~--v~~ADIVvsAtg~~-~~i~~~~ik-- 91 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT----IQ---LQSK--VHDADVVVVGSPKP-EKVPTEWIK-- 91 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC----cC---HHHH--HhhCCEEEEecCCC-CccCHHHcC--
Confidence 67889999877 666678999999999999988775311 12 2222 35678888777666 443333322
Q ss_pred CCCceEEEEccc
Q 022234 125 TPNVRIGVVGAG 136 (300)
Q Consensus 125 ~~~~~i~aVG~~ 136 (300)
++..+.-+|..
T Consensus 92 -pGa~Vidvg~~ 102 (140)
T cd05212 92 -PGATVINCSPT 102 (140)
T ss_pred -CCCEEEEcCCC
Confidence 35556666654
No 353
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=39.17 E-value=2.5e+02 Score=24.09 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=78.8
Q ss_pred CccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCC
Q 022234 101 IFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKC 178 (300)
Q Consensus 101 ~~d~ivFTS~~-av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~ 178 (300)
..+.||-.... ........+.. .+++++..+.......... .. ..-....|.. ..+..+++.+.... .+
T Consensus 67 ~v~~iig~~~~~~~~~~~~~~~~---~~iP~i~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 137 (299)
T cd04509 67 GVDALVGPVSSGVALAVAPVAEA---LKIPLISPGATAPGLTDKK---GY-PYLFRTGPSDEQQAEALADYIKEYN--WK 137 (299)
T ss_pred CceEEEcCCCcHHHHHHHHHHhh---CCceEEeccCCCccccccc---CC-CCEEEecCCcHHHHHHHHHHHHHcC--Cc
Confidence 68887765433 33333333332 3678888776543221101 00 1211223433 34566776666543 36
Q ss_pred EEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-HHHHHHHHHhcccC
Q 022234 179 TVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLISDTE 250 (300)
Q Consensus 179 ~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-s~v~~~~~~~~~~~ 250 (300)
++.++..+.. ...+.+.+++.|..+.....|... .......++++ .+.|+|++.+. ..+..|++.+...+
T Consensus 138 ~v~iv~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~g 215 (299)
T cd04509 138 KVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLG--TTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQAAEAG 215 (299)
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEecCCCC--CccHHHHHHHHHhcCCCEEEEcccchHHHHHHHHHHHcC
Confidence 7777765543 456777888898776544444321 12222334333 35788877766 88888888877654
Q ss_pred C-CCceEEE
Q 022234 251 Q-WSNSVAC 258 (300)
Q Consensus 251 ~-~~~~vv~ 258 (300)
. .+.+++.
T Consensus 216 ~~~~~~~i~ 224 (299)
T cd04509 216 LTGGYPILG 224 (299)
T ss_pred CCCCCcEEe
Confidence 3 2455554
No 354
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=39.05 E-value=1e+02 Score=25.40 Aligned_cols=69 Identities=10% Similarity=0.119 Sum_probs=36.8
Q ss_pred HHHHHHhCCCCEEEeeeeEeee--C----CCchhHHHhh-hcCCccEEEEeCh-------HHHHHHHHHHHHcCCCCceE
Q 022234 65 LIKALAKHRIDCLELPLIQHAQ--G----PDTDRLSSVL-NDTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVRI 130 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~--~----~~~~~l~~~l-~~~~~d~ivFTS~-------~av~~~~~~l~~~~~~~~~i 130 (300)
+.+.+++.|.++..+-+..... . ...+.+.... .....|.|||.|| ...+.|++.+....+.+.++
T Consensus 22 ~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~l~~K~v 101 (171)
T TIGR03567 22 VREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQRALRGKVV 101 (171)
T ss_pred HHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCChhhhCCCEE
Confidence 4555566787776655443211 0 0112333333 4568999999998 35566666553222334444
Q ss_pred EEE
Q 022234 131 GVV 133 (300)
Q Consensus 131 ~aV 133 (300)
..+
T Consensus 102 ~~~ 104 (171)
T TIGR03567 102 LPI 104 (171)
T ss_pred EEE
Confidence 433
No 355
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=39.05 E-value=67 Score=28.61 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=47.5
Q ss_pred eEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCee
Q 022234 129 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 203 (300)
Q Consensus 129 ~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v 203 (300)
.++++|...--++++. |++|++.= .+.++..++-. .|..+|+++....-..+.+.|.+.|..+
T Consensus 190 ~iaAmG~~a~va~rkl------giePdi~F--g~~~a~ieAa~----rGl~vlvv~t~~ml~~~~~~l~~~~~eY 252 (260)
T COG1497 190 IIAAMGTEALVALRKL------GIEPDIEF--GTLEAAIEAAV----RGLSVLVVITRRMLRYLLRKLEEEGLEY 252 (260)
T ss_pred hhhhhhHHHHHHHHHc------CCCCCeee--cccHHHHHHHh----cCCcEEEEEeHHHHHHHHHHHHhcCCcc
Confidence 6899999999999999 99987641 22333333222 4678999988888888888999988765
No 356
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=39.02 E-value=2.2e+02 Score=24.44 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=48.1
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhC-CCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEC
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 235 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS 235 (300)
..+.|.+.+....+.+.+++|+..... -....+.+++. |+++..+.+.. .. +..+.+...|+|+++-
T Consensus 16 ~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~----~~---~~~~~l~~ad~I~l~G 88 (212)
T cd03146 16 ALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD----TE---DPLDALLEADVIYVGG 88 (212)
T ss_pred chHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC----cc---cHHHHHhcCCEEEECC
Confidence 334455444443334578888866543 22466778888 88887776655 11 2233456889999999
Q ss_pred hHHHHHHHHHhcc
Q 022234 236 PSAVRSWVNLISD 248 (300)
Q Consensus 236 ~s~v~~~~~~~~~ 248 (300)
.++.+ +++.+++
T Consensus 89 G~~~~-~~~~l~~ 100 (212)
T cd03146 89 GNTFN-LLAQWRE 100 (212)
T ss_pred chHHH-HHHHHHH
Confidence 75554 4455544
No 357
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=38.97 E-value=3e+02 Score=25.02 Aligned_cols=166 Identities=14% Similarity=0.108 Sum_probs=80.3
Q ss_pred cCCccEEEEe--ChHHHHHHHHHHHHcCCCCceEEEEccchHH-HHHHHhhccCCCccccccCCCCcH-HH----HHHhc
Q 022234 99 DTIFDWIIIT--SPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS-IFEEVIQSSKCSLDVAFSPSKATG-KI----LASEL 170 (300)
Q Consensus 99 ~~~~d~ivFT--S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~-~L~~~~~~~~~G~~~~~~p~~~~~-e~----L~~~L 170 (300)
....|.+|+. .........+.+.+ .++++++++..... .++.. .....+..+.+.+ .. +.+.+
T Consensus 79 ~~~vdgiIi~~~~~~~~~~~l~~l~~---~giPvV~vd~~~~~~~~~~~------~~~~~V~~D~~~ag~~a~~~l~~~~ 149 (330)
T PRK15395 79 AKGVKALAINLVDPAAAPTVIEKARG---QDVPVVFFNKEPSRKALDSY------DKAYYVGTDSKESGIIQGDLIAKHW 149 (330)
T ss_pred HcCCCEEEEeccCHHHHHHHHHHHHH---CCCcEEEEcCCccccccccc------cceeEEccChHHHHHHHHHHHHHHH
Confidence 4689999986 33334444444443 36789999874211 11111 1111122333322 22 33333
Q ss_pred ccC-----CCCC-CEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCc-H---HHHHHc--CCCCEE
Q 022234 171 PKN-----GKKK-CTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-Q---TVLKQA--LSIPVV 231 (300)
Q Consensus 171 ~~~-----~~~~-~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~---~~~~~l--~~~d~I 231 (300)
... ...| .+++++.|... ..-+.+.|+++|..+.....+......... + ++++.. .++++|
T Consensus 150 ~~~~~~~~~~~g~~~i~~i~g~~~~~~~~~R~~G~~~al~~~g~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ai 229 (330)
T PRK15395 150 KANPAWDLNKDGKIQYVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVV 229 (330)
T ss_pred hhccccccCCCCceEEEEEecCCCCchHHHHHHHHHHHHHhcCCCeeeeecccCCcCHHHHHHHHHHHHhhCcCCCeeEE
Confidence 210 0112 24566655432 223456777788765543222111111111 1 122211 246888
Q ss_pred EEEChHHHHHHHHHhcccCCCCceEEEeCH-HHHHHHHHcCCC
Q 022234 232 AVASPSAVRSWVNLISDTEQWSNSVACIGE-TTASAAKRLGLK 273 (300)
Q Consensus 232 vftS~s~v~~~~~~~~~~~~~~~~vv~IG~-~Ta~~l~~~G~~ 273 (300)
+..|-..+...++.+.+.++.++++++++. ..+..+..-|..
T Consensus 230 ~~~~d~~A~gvl~al~~~Gl~~vpVvg~D~~~~~~~~~~~g~~ 272 (330)
T PRK15395 230 IANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGAM 272 (330)
T ss_pred EECCchHHHHHHHHHHhcCCCCCeEEeeCCCHHHHHHHHhCCc
Confidence 888888877787877766543567888764 334444344543
No 358
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.83 E-value=1.6e+02 Score=25.01 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=45.5
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCC--ccEE--EEeChHHHHHHHHHHH
Q 022234 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTI--FDWI--IITSPEAGSVFLEAWK 121 (300)
Q Consensus 47 ~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~--~d~i--vFTS~~av~~~~~~l~ 121 (300)
.+.+++||||.... -...+++.|.++|++++.+-... ......+...+.... ...+ =++...++..+++.+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDIN---EEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIV 78 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 36688999998754 35688888999998876541111 001111212221111 1111 1466778877777665
Q ss_pred Hc-CCCCceEEEEcc
Q 022234 122 EA-GTPNVRIGVVGA 135 (300)
Q Consensus 122 ~~-~~~~~~i~aVG~ 135 (300)
+. +.-+.-|.+.|.
T Consensus 79 ~~~~~id~vi~~ag~ 93 (247)
T PRK05565 79 EKFGKIDILVNNAGI 93 (247)
T ss_pred HHhCCCCEEEECCCc
Confidence 42 222444555553
No 359
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=38.74 E-value=2.6e+02 Score=24.24 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=48.5
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcC--CccEEE--EeChHHHHHHHHHHH
Q 022234 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDT--IFDWII--ITSPEAGSVFLEAWK 121 (300)
Q Consensus 47 ~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~--~~d~iv--FTS~~av~~~~~~l~ 121 (300)
++.|++++||..... ...+++.|.++|++++..- ......++....+... ...++. +++..+++.+++.+.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFND----INQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIE 82 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEe----CCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 467899999987653 4688999999999877541 1111111121222111 122211 478888888888765
Q ss_pred Hc-CCCCceEEEEcc
Q 022234 122 EA-GTPNVRIGVVGA 135 (300)
Q Consensus 122 ~~-~~~~~~i~aVG~ 135 (300)
+. +.-+.-|.+.|.
T Consensus 83 ~~~~~id~li~~ag~ 97 (265)
T PRK07097 83 KEVGVIDILVNNAGI 97 (265)
T ss_pred HhCCCCCEEEECCCC
Confidence 53 322445555553
No 360
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=38.67 E-value=1.7e+02 Score=26.75 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=43.9
Q ss_pred CCCEEEEEChHH---------HHHHHHHhcccCC--CCceEEEeCHHHHHHHHHcCCCe----EEecCCCCHHHHHHHHH
Q 022234 227 SIPVVAVASPSA---------VRSWVNLISDTEQ--WSNSVACIGETTASAAKRLGLKN----VYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 227 ~~d~IvftS~s~---------v~~~~~~~~~~~~--~~~~vv~IG~~Ta~~l~~~G~~~----~~v~~~p~~~~l~~ai~ 291 (300)
+..+|++||-.+ ++.....+..... .++.+++||.+..+.+.+.|+++ .-..+.|+.+.+.+...
T Consensus 72 r~~~IviTSDrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~p~~~~~~~i~~ 151 (287)
T COG0224 72 RVLYIVITSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEAIQIAD 151 (287)
T ss_pred ceEEEEEecCcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccCCCHHHHHHHHH
Confidence 456777777443 3433334433221 25789999999999999999864 23567788887666554
Q ss_pred HH
Q 022234 292 EA 293 (300)
Q Consensus 292 ~~ 293 (300)
+.
T Consensus 152 ~~ 153 (287)
T COG0224 152 KI 153 (287)
T ss_pred HH
Confidence 43
No 361
>PLN02891 IMP cyclohydrolase
Probab=38.66 E-value=3.6e+02 Score=26.96 Aligned_cols=130 Identities=16% Similarity=0.174 Sum_probs=76.3
Q ss_pred cEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC----C-CC
Q 022234 103 DWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG----K-KK 177 (300)
Q Consensus 103 d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~----~-~~ 177 (300)
-.|=.+-+.++.-|.+.|.+. +..|++-| .|++.|++. |+++.-+.+ +|+ +=+.|.... . --
T Consensus 25 ALISVsDKtgi~~fAk~L~~~---gveIiSTg-GTak~L~e~------Gi~v~~Vsd-~Tg--fPEiL~GRVKTLHPkIh 91 (547)
T PLN02891 25 ALISLSDKTDLALLANGLQEL---GYTIVSTG-GTASALEAA------GVSVTKVEE-LTN--FPEMLDGRVKTLHPAVH 91 (547)
T ss_pred EEEEEecccCHHHHHHHHHHC---CCEEEEcc-hHHHHHHHc------CCceeeHHh-ccC--CchhhCCcccccCchhh
Confidence 345567788999999998876 57899987 589999999 998855422 221 111221110 0 01
Q ss_pred CEEEEEcCCCChhHHHHHHHhCCCeeEEE---Eeeeeee---C-CCCcHHHHHHc------------C-CCCEEEEEChH
Q 022234 178 CTVLYPASAKASNEIEEGLSNRGFEVVRL---NTYTTEP---V-HHVDQTVLKQA------------L-SIPVVAVASPS 237 (300)
Q Consensus 178 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~---~vY~~~~---~-~~~~~~~~~~l------------~-~~d~IvftS~s 237 (300)
+-||.-|.+ +.=.+.|+++|+....+ ..|--+. . ....+++++.+ + --++.++++|+
T Consensus 92 gGILa~r~~---~~h~~~l~~~~I~~IDlVvVNLYPF~~tv~~~~~~~ee~IEnIDIGGpsmlRAAAKN~~~V~Vv~dP~ 168 (547)
T PLN02891 92 GGILARRDQ---EHHMEALNEHGIGTIDVVVVNLYPFYDTVTSGGISFEDGVENIDIGGPAMIRAAAKNHKDVLVVVDPA 168 (547)
T ss_pred hhhhcCCCC---HHHHHHHHHcCCCceeeEEEeccChHHHHhcCCCCHHHHHHhccCCcHHHHHHHHhCCCCeEEECCHH
Confidence 123333332 23345688888765544 4443211 1 11123334332 2 24799999999
Q ss_pred HHHHHHHHhcc
Q 022234 238 AVRSWVNLISD 248 (300)
Q Consensus 238 ~v~~~~~~~~~ 248 (300)
..+.+++.++.
T Consensus 169 DY~~vl~el~~ 179 (547)
T PLN02891 169 DYPALLEYLKG 179 (547)
T ss_pred HHHHHHHHHHc
Confidence 99999988764
No 362
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=38.62 E-value=1e+02 Score=29.77 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=53.4
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh----
Q 022234 163 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---- 236 (300)
Q Consensus 163 ~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~---- 236 (300)
+--|++...+.... +++||+.|++.-.-+.-.-...|+.-..+.+|. +...+.+++.+ .++|.+++=|-
T Consensus 107 STLLLQva~~lA~~-~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~a----Et~~e~I~~~l~~~~p~lvVIDSIQT~~ 181 (456)
T COG1066 107 STLLLQVAARLAKR-GKVLYVSGEESLQQIKLRADRLGLPTNNLYLLA----ETNLEDIIAELEQEKPDLVVIDSIQTLY 181 (456)
T ss_pred HHHHHHHHHHHHhc-CcEEEEeCCcCHHHHHHHHHHhCCCccceEEeh----hcCHHHHHHHHHhcCCCEEEEeccceee
Confidence 33455444444333 499999999987766554555565444444443 22223344333 46777766442
Q ss_pred -----------HHHHHHHHHhccc-CCCCceEEEeCHHHHHH
Q 022234 237 -----------SAVRSWVNLISDT-EQWSNSVACIGETTASA 266 (300)
Q Consensus 237 -----------s~v~~~~~~~~~~-~~~~~~vv~IG~~Ta~~ 266 (300)
++|+.....+-.. +..++.++-+|..|.+-
T Consensus 182 s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG 223 (456)
T COG1066 182 SEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEG 223 (456)
T ss_pred cccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcccc
Confidence 3344443332221 12477888888877653
No 363
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=38.49 E-value=1.8e+02 Score=27.52 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=49.4
Q ss_pred CCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHH---------------
Q 022234 177 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAV--------------- 239 (300)
Q Consensus 177 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v--------------- 239 (300)
+++++|+.+++....+.......|+....+.++.. ...+++.+.+ .+++.|++=|-+++
T Consensus 110 g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e----~~le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qv 185 (372)
T cd01121 110 GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAE----TNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQV 185 (372)
T ss_pred CCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEcc----CcHHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHH
Confidence 47999999998877777666777777666655532 2223333333 36777776664433
Q ss_pred HHHHHHhccc-CCCCceEEEeCHHHHH
Q 022234 240 RSWVNLISDT-EQWSNSVACIGETTAS 265 (300)
Q Consensus 240 ~~~~~~~~~~-~~~~~~vv~IG~~Ta~ 265 (300)
+.++..+.+. ...++.++.+|..|.+
T Consensus 186 r~~~~~L~~lak~~~itvilvghvtk~ 212 (372)
T cd01121 186 RECTAELMRFAKERNIPIFIVGHVTKE 212 (372)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeccCC
Confidence 3222222211 1246788888876653
No 364
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=38.46 E-value=2.6e+02 Score=25.04 Aligned_cols=9 Identities=11% Similarity=0.069 Sum_probs=4.0
Q ss_pred CCEEEEEcC
Q 022234 177 KCTVLYPAS 185 (300)
Q Consensus 177 ~~~vL~~rg 185 (300)
|.+|++.+.
T Consensus 99 gd~Vlv~~~ 107 (294)
T cd00615 99 GDKILIDRN 107 (294)
T ss_pred CCEEEEeCC
Confidence 344444443
No 365
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=38.13 E-value=1.7e+02 Score=28.74 Aligned_cols=74 Identities=20% Similarity=0.116 Sum_probs=45.8
Q ss_pred chHHHHHHHHhCC-CCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH----HHHHHHHHHHcCCCCceEEEEcc
Q 022234 61 KNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA----GSVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 61 ~~~~l~~~L~~~G-~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a----v~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
.-.-++..|++.| .+|..+.... .+.+ .+.+.+.+....+|.|.||+-.. +..+.+.+++. .++.++++-|+
T Consensus 24 gl~~lAa~L~~~G~~~V~iiD~~~-~~~~-~~~~~~~l~~~~pdvVgis~~t~~~~~a~~~~~~~k~~-~P~~~iV~GG~ 100 (497)
T TIGR02026 24 WVAYIGGALLDAGYHDVTFLDAMT-GPLT-DEKLVERLRAHCPDLVLITAITPAIYIACETLKFARER-LPNAIIVLGGI 100 (497)
T ss_pred HHHHHHHHHHhcCCcceEEecccc-cCCC-HHHHHHHHHhcCcCEEEEecCcccHHHHHHHHHHHHHH-CCCCEEEEcCC
Confidence 4467788899999 6887776542 2222 24455555556899999987532 22233333433 25788888887
Q ss_pred ch
Q 022234 136 GT 137 (300)
Q Consensus 136 ~T 137 (300)
..
T Consensus 101 h~ 102 (497)
T TIGR02026 101 HP 102 (497)
T ss_pred Cc
Confidence 53
No 366
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=38.05 E-value=1.2e+02 Score=28.89 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=28.7
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEe
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~ 79 (300)
..+.|++|.|.-.....-.+++.|++.|.++..+
T Consensus 283 ~~l~gkrv~i~~~~~~~~~la~~l~elGm~v~~~ 316 (410)
T cd01968 283 ARLEGKKAALYTGGVKSWSLVSALQDLGMEVVAT 316 (410)
T ss_pred HHhCCCEEEEEcCCchHHHHHHHHHHCCCEEEEE
Confidence 3478999998877777889999999999998766
No 367
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=38.01 E-value=3.3e+02 Score=25.11 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=37.3
Q ss_pred hHHHHHHHhhccCCCccccccCCCCcHHH---HHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 022234 137 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 137 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 207 (300)
-.+.+++. |+...+.....+.+. .++.+..... .-+++.. ....+.+.+.|.+.|..+..+.
T Consensus 80 i~~~~~~~------gy~~~l~~~~~~~~~e~~~~~~l~~~~v--dGiIi~~-~~~~~~~~~~l~~~~~P~V~i~ 144 (333)
T COG1609 80 IEEAAREA------GYSLLLANTDDDPEKEREYLETLLQKRV--DGLILLG-ERPNDSLLELLAAAGIPVVVID 144 (333)
T ss_pred HHHHHHHc------CCEEEEECCCCCHHHHHHHHHHHHHcCC--CEEEEec-CCCCHHHHHHHHhcCCCEEEEe
Confidence 45677888 998877776665443 3333433322 2344443 5566677888888887764443
No 368
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=38.00 E-value=74 Score=31.59 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=37.2
Q ss_pred CCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHH-HhCCCCEEEe
Q 022234 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKAL-AKHRIDCLEL 79 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~~~~~l~~~L-~~~G~~v~~~ 79 (300)
+-.+..|+.+ +.++..+.|++++|.-.....-.+++.| ++.|++++..
T Consensus 287 ~~~~~~~~~r----~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ELGm~vv~~ 335 (513)
T CHL00076 287 FVSQAAWFSR----SIDCQNLTGKKAVVFGDATHAASMTKILAREMGIRVSCA 335 (513)
T ss_pred hhhhhhHhhh----hhhccccCCCEEEEEcCchHHHHHHHHHHHhCCCEEEEe
Confidence 3345578766 3445889999999998888888899888 6999998643
No 369
>PRK08105 flavodoxin; Provisional
Probab=37.94 E-value=1.6e+02 Score=23.83 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=34.7
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCc-cEEEEeChH-------HHHHHHHHHHHc--CCCCceEE
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIF-DWIIITSPE-------AGSVFLEAWKEA--GTPNVRIG 131 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~-d~ivFTS~~-------av~~~~~~l~~~--~~~~~~i~ 131 (300)
++.+++.|++.|+++..+++-.... +....+ -+|++||.. ....|+..+.+. .+.+++++
T Consensus 19 A~~l~~~l~~~g~~~~~~~~~~~~~----------~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~~~~a 88 (149)
T PRK08105 19 AEEAEAILTAQGHEVTLFEDPELSD----------WQPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPNLRYG 88 (149)
T ss_pred HHHHHHHHHhCCCceEEechhhCCc----------hhcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCcccCCCEEE
Confidence 4455677777899988776533211 112222 355556653 245566666654 34455655
Q ss_pred EEccc
Q 022234 132 VVGAG 136 (300)
Q Consensus 132 aVG~~ 136 (300)
+.|-.
T Consensus 89 vfGlG 93 (149)
T PRK08105 89 VIALG 93 (149)
T ss_pred EEeee
Confidence 55543
No 370
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=37.91 E-value=95 Score=29.54 Aligned_cols=95 Identities=15% Similarity=0.059 Sum_probs=54.2
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCC
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGT 125 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~ 125 (300)
..+.|++|++.-.....-.+++.|.+.|++++.+-. +..+.+.....+..-..+..|.... ...-+.+.+.+...
T Consensus 272 ~~l~Gkrv~i~g~~~~~~~la~~L~elGm~vv~~~t----~~~~~~~~~~~~~~l~~~~~v~~~~-d~~~l~~~i~~~~p 346 (396)
T cd01979 272 DLLRGKSIFFMGDNLLEIPLARFLTRCGMIVVEVGT----PYLDKRFQAAELELLPPMVRIVEKP-DNYRQLDRIRELRP 346 (396)
T ss_pred HhhcCCEEEEECCchHHHHHHHHHHHCCCEEEeeCC----CcCChHHHHHHHHhcCCCCeEEECC-CHHHHHHHHHhcCC
Confidence 458899999887766788999999999999987521 1111111122221111344444433 33333344444333
Q ss_pred CCceEEEEccchHHHHHHHhhccCCCccc
Q 022234 126 PNVRIGVVGAGTASIFEEVIQSSKCSLDV 154 (300)
Q Consensus 126 ~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 154 (300)
-++.-|...+.-+... |+.+
T Consensus 347 ---Dlli~~~~~a~pl~r~------G~P~ 366 (396)
T cd01979 347 ---DLVVTGLGLANPLEAR------GITT 366 (396)
T ss_pred ---CEEEecccccCcHHhC------CCcc
Confidence 2343455566677777 7765
No 371
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.76 E-value=2.4e+02 Score=25.85 Aligned_cols=127 Identities=9% Similarity=0.019 Sum_probs=67.5
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh----hcCCccEEEEeChHH--HH--HHHHHHHH-cCCCCceEEEEcc
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL----NDTIFDWIIITSPEA--GS--VFLEAWKE-AGTPNVRIGVVGA 135 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l----~~~~~d~ivFTS~~a--v~--~~~~~l~~-~~~~~~~i~aVG~ 135 (300)
-.+..++.|+++..+-+-+. ...+++.+.+ ++...|.|++--|-- +. ..++.+.. ...|++. +
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~---~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~-----~ 124 (294)
T PRK14187 53 KQRKAEMLGLRSETILLPST---ISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFH-----N 124 (294)
T ss_pred HHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCC-----h
Confidence 34566777988766544211 1223343334 356789999887732 21 11221111 0112222 2
Q ss_pred chHHHHHHHhhccCCCcc-ccccCCCCcHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEe
Q 022234 136 GTASIFEEVIQSSKCSLD-VAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNT 208 (300)
Q Consensus 136 ~Ta~~L~~~~~~~~~G~~-~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~v 208 (300)
.-...|- . |-. ..+.|- |+.+.++.|..+. ..|++++++ ||.....-|...|.++|+.|+.+.-
T Consensus 125 ~n~g~l~-~------g~~~~~~~Pc--Tp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs 192 (294)
T PRK14187 125 ENVGRLF-T------GQKKNCLIPC--TPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHS 192 (294)
T ss_pred hhHHHHh-C------CCCCCCccCc--CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCC
Confidence 1111111 1 221 234544 5677777666543 367887777 7777777788889999988865443
No 372
>PRK00170 azoreductase; Reviewed
Probab=37.57 E-value=44 Score=28.12 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=35.1
Q ss_pred HHHHHHhC--CCeeEEEEeeeeeeCCCC------------------------cHHHHHHcCCCCEEEEECh-------HH
Q 022234 192 IEEGLSNR--GFEVVRLNTYTTEPVHHV------------------------DQTVLKQALSIPVVAVASP-------SA 238 (300)
Q Consensus 192 L~~~L~~~--G~~v~~~~vY~~~~~~~~------------------------~~~~~~~l~~~d~IvftS~-------s~ 238 (300)
+.+.|++. |.+|+.+.+|+...+... ..++.+.+...|.|||.|| ..
T Consensus 25 ~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP~y~~~~pa~ 104 (201)
T PRK00170 25 FIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAPMYNFSIPTQ 104 (201)
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeecccccCCcHH
Confidence 35566666 778888877765422110 0112334567899999997 67
Q ss_pred HHHHHHHhc
Q 022234 239 VRSWVNLIS 247 (300)
Q Consensus 239 v~~~~~~~~ 247 (300)
++.|++.+-
T Consensus 105 LK~~iDrv~ 113 (201)
T PRK00170 105 LKAYIDLIA 113 (201)
T ss_pred HHHHHHhhe
Confidence 888888753
No 373
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=37.55 E-value=84 Score=28.98 Aligned_cols=61 Identities=8% Similarity=0.084 Sum_probs=41.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
.|.+|++..|.- ..+....+..|++++.+|+-. ....+.+.+.+.+.....+.|++++++-
T Consensus 104 ~gd~vlv~~P~y--~~~~~~~~~~g~~~~~i~~~~-~~~~d~~~l~~~~~~~~~~~v~l~~p~N 164 (356)
T PRK04870 104 PGATVLAPEPGF--VMYRMSAKLAGLEFVGVPLTA-DFTLDLPAMLAAIAEHRPALVFLAYPNN 164 (356)
T ss_pred CCCEEEECCCCH--HHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHhhcCCCCEEEEcCCCC
Confidence 477899888753 456677788899999999742 1123455666555445678888886654
No 374
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=37.53 E-value=23 Score=28.29 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=42.7
Q ss_pred EEccchHHHHHHHhhccCCC--ccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 022234 132 VVGAGTASIFEEVIQSSKCS--LDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGF 201 (300)
Q Consensus 132 aVG~~Ta~~L~~~~~~~~~G--~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~ 201 (300)
.||..|-+.++++ . |++.-.....+.+.|.+.+.++. -+.+++..+...+.|.+.|...+.
T Consensus 9 SIG~qtLdVi~~~------~d~f~v~~Lsa~~n~~~L~~q~~~f~---p~~v~i~~~~~~~~l~~~~~~~~~ 71 (129)
T PF02670_consen 9 SIGTQTLDVIRKH------PDKFEVVALSAGSNIEKLAEQAREFK---PKYVVIADEEAYEELKKALPSKGP 71 (129)
T ss_dssp HHHHHHHHHHHHC------TTTEEEEEEEESSTHHHHHHHHHHHT----SEEEESSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhC------CCceEEEEEEcCCCHHHHHHHHHHhC---CCEEEEcCHHHHHHHHHHhhhcCC
Confidence 3788888888888 6 66655555667788877776653 366777777777788888765554
No 375
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=37.49 E-value=3e+02 Score=24.56 Aligned_cols=105 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEE-
Q 022234 163 GKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA- 234 (300)
Q Consensus 163 ~e~L~~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivft- 234 (300)
+..++..+.+.. +.+++.++..+.. ...+.+.+++.|++|.....|... ..+....+..+ .+.|+|++.
T Consensus 122 ~~~~~~~~~~~~-~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~d~~~~l~~i~~~~~~~vi~~~ 198 (334)
T cd06342 122 GPAAAKYAVETL-KAKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDG--ATDFSAILTKIKAANPDAVFFGG 198 (334)
T ss_pred HHHHHHHHHHhc-CCCEEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCCCC--CccHHHHHHHHHhcCCCEEEEcC
Q ss_pred ChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcC
Q 022234 235 SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLG 271 (300)
Q Consensus 235 S~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G 271 (300)
++..+..|++.+.+.+ .+.+++.........+.+.+
T Consensus 199 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 234 (334)
T cd06342 199 YYPEAGPLVRQMRQLG-LKAPFMGGDGLCDPEFIKIA 234 (334)
T ss_pred cchhHHHHHHHHHHcC-CCCcEEecCccCCHHHHHHh
No 376
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=37.15 E-value=3.2e+02 Score=24.82 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=57.3
Q ss_pred CCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe----eeeeeCCCCcHHHHHHcCCCCEEEEEChHH--------------
Q 022234 177 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNT----YTTEPVHHVDQTVLKQALSIPVVAVASPSA-------------- 238 (300)
Q Consensus 177 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v----Y~~~~~~~~~~~~~~~l~~~d~IvftS~s~-------------- 238 (300)
++++.++.|+..--.+.+.|.+.|++|...-. |+..-..... ...+.+.+.|+|++--|-.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~-~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSS-SLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeec-cHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 57999999999999999999999998865211 2111000000 0112246789988774421
Q ss_pred ---HHHHHHHhcccCCCC-ceEEEeCHHHHHHHHHcCCCeE
Q 022234 239 ---VRSWVNLISDTEQWS-NSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 239 ---v~~~~~~~~~~~~~~-~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
=+.+++.+++. . +-+-++.+...+.+.+.|+.+.
T Consensus 81 ~~~~~~~l~~l~~~---~~v~~G~~~~~~~~~~~~~gi~~~ 118 (296)
T PRK08306 81 LVLTEELLELTPEH---CTIFSGIANPYLKELAKETNRKLV 118 (296)
T ss_pred CcchHHHHHhcCCC---CEEEEecCCHHHHHHHHHCCCeEE
Confidence 12344544432 1 1222355788888899999864
No 377
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=37.03 E-value=67 Score=30.61 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=49.0
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEe--eeCCCchhHHHhhhcCCccEEEEeChH----------HHHH
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQH--AQGPDTDRLSSVLNDTIFDWIIITSPE----------AGSV 115 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~--~~~~~~~~l~~~l~~~~~d~ivFTS~~----------av~~ 115 (300)
-.|-.|+++.|.= ..+...+.-.|++++.+|+..- ...++.+.+.+.+.. +-.+|+++||| ..+.
T Consensus 111 ~pGDeVlip~P~Y--~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~P~NPTGav~~~~~l~~ 187 (393)
T COG0436 111 NPGDEVLIPDPGY--PSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKA 187 (393)
T ss_pred CCCCEEEEeCCCC--cCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEeCCCCCcCcCCCHHHHHH
Confidence 3467789988864 4566677778999999998542 233456667666633 67899998876 3455
Q ss_pred HHHHHHHc
Q 022234 116 FLEAWKEA 123 (300)
Q Consensus 116 ~~~~l~~~ 123 (300)
+.+.+.++
T Consensus 188 i~~~a~~~ 195 (393)
T COG0436 188 IVELAREH 195 (393)
T ss_pred HHHHHHHc
Confidence 55555554
No 378
>PRK10307 putative glycosyl transferase; Provisional
Probab=36.88 E-value=3.6e+02 Score=25.22 Aligned_cols=175 Identities=11% Similarity=0.111 Sum_probs=88.8
Q ss_pred cCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEcc--ch----------HHHHHHHhhccCCCcc-----ccccCC--
Q 022234 99 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA--GT----------ASIFEEVIQSSKCSLD-----VAFSPS-- 159 (300)
Q Consensus 99 ~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~--~T----------a~~L~~~~~~~~~G~~-----~~~~p~-- 159 (300)
....|.|+.+|....+.+.+ .+.+..++.++.. .+ ...+++.+ |+. ..++..
T Consensus 169 ~~~ad~ii~~S~~~~~~~~~----~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~G~l~ 239 (412)
T PRK10307 169 LRRFDNVSTISRSMMNKARE----KGVAAEKVIFFPNWSEVARFQPVADADVDALRAQL-----GLPDGKKIVLYSGNIG 239 (412)
T ss_pred HhhCCEEEecCHHHHHHHHH----cCCCcccEEEECCCcCHhhcCCCCccchHHHHHHc-----CCCCCCEEEEEcCccc
Confidence 45789999999988887653 2333334544432 11 11233322 332 122221
Q ss_pred -CCcHHHHHHhcccCCC-CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChH
Q 022234 160 -KATGKILASELPKNGK-KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 237 (300)
Q Consensus 160 -~~~~e~L~~~L~~~~~-~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s 237 (300)
.-+.+.|++.+..... ++-++++++....++.+.+..+..|.. .+...-.. ..+++.+.+...|+.+++|..
T Consensus 240 ~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--~v~f~G~~----~~~~~~~~~~~aDi~v~ps~~ 313 (412)
T PRK10307 240 EKQGLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLP--NVHFLPLQ----PYDRLPALLKMADCHLLPQKA 313 (412)
T ss_pred cccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCC--ceEEeCCC----CHHHHHHHHHhcCEeEEeecc
Confidence 2345667776654322 223566655444466677666666653 22222111 122333334577888877654
Q ss_pred HHHH------HHHHhcccCCCCceEEEe---CHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 238 AVRS------WVNLISDTEQWSNSVACI---GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 238 ~v~~------~~~~~~~~~~~~~~vv~I---G~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
.... +++.+. -++++++. |....+.+...|+ ++ +.-+.+++.++|.+.+..
T Consensus 314 e~~~~~~p~kl~eama----~G~PVi~s~~~g~~~~~~i~~~G~---~~-~~~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 314 GAADLVLPSKLTNMLA----SGRNVVATAEPGTELGQLVEGIGV---CV-EPESVEALVAAIAALARQ 373 (412)
T ss_pred CcccccCcHHHHHHHH----cCCCEEEEeCCCchHHHHHhCCcE---Ee-CCCCHHHHHHHHHHHHhC
Confidence 3210 122221 25677765 3234455553333 22 345889999999877654
No 379
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=36.85 E-value=3.2e+02 Score=24.61 Aligned_cols=215 Identities=12% Similarity=0.095 Sum_probs=103.9
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCC---
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTP--- 126 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~--- 126 (300)
.++|++.....++..+++.|...+.......+-.-. .. + ...+-..+++-.-+.+.+...+++.+.+
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g--~~---l-----~~~~~~~~~~G~l~~e~l~~~l~e~~i~llI 71 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAAPVDIILSSLTGYG--AK---L-----AEQIGPVRVGGFLGAEGLAAFLREEGIDLLI 71 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhccCccEEEEEccccc--cc---c-----hhccCCeeecCcCCHHHHHHHHHHcCCCEEE
Confidence 468999998888999999998887333222221111 00 0 1112225556666666666666555432
Q ss_pred --CceEEE-EccchHHHHHHHhhccCCCcccccc--C------C----CCcHHHHHHhcccCCCCCCEEEEEcCCCChhH
Q 022234 127 --NVRIGV-VGAGTASIFEEVIQSSKCSLDVAFS--P------S----KATGKILASELPKNGKKKCTVLYPASAKASNE 191 (300)
Q Consensus 127 --~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~--p------~----~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~ 191 (300)
.-++++ |-....+++++. |+.-.-. | + -.+-++.++.+.+. +++|++.-|...-..
T Consensus 72 DATHPyAa~iS~Na~~aake~------gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~---~~rVflt~G~~~l~~ 142 (257)
T COG2099 72 DATHPYAARISQNAARAAKET------GIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQL---GRRVFLTTGRQNLAH 142 (257)
T ss_pred ECCChHHHHHHHHHHHHHHHh------CCcEEEEECCccccCCCceEEecCHHHHHHHHhcc---CCcEEEecCccchHH
Confidence 223322 334444455555 5542110 1 1 12345666555543 478998887765444
Q ss_pred HHHHHHhCCCeeEEEEeeee-eeCCCCcHHHHHHcC--CCCEEEEEChHHHHHHHHHhcccCCCCceEEEe---CHH---
Q 022234 192 IEEGLSNRGFEVVRLNTYTT-EPVHHVDQTVLKQAL--SIPVVAVASPSAVRSWVNLISDTEQWSNSVACI---GET--- 262 (300)
Q Consensus 192 L~~~L~~~G~~v~~~~vY~~-~~~~~~~~~~~~~l~--~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~I---G~~--- 262 (300)
+.+... .. .++-+ .+....... +.++. .-++|.---|-+.+.=..++.+ +++.++.. |..
T Consensus 143 f~~~~~---~~----~~~~Rvlp~~~~~~~-~~~~~~p~~~Iia~~GPfs~~~n~all~q---~~id~vItK~SG~~Gg~ 211 (257)
T COG2099 143 FVAADA---HS----HVLARVLPPPDVLAK-CEDLGVPPARIIAMRGPFSEEDNKALLEQ---YRIDVVVTKNSGGAGGT 211 (257)
T ss_pred HhcCcc---cc----eEEEEEcCchHHHHH-HHhcCCChhhEEEecCCcChHHHHHHHHH---hCCCEEEEccCCcccCc
Confidence 433221 11 22333 333333222 33332 2334544334433322233332 24444332 222
Q ss_pred --HHHHHHHcCCCeEEecCC-------CCHHHHHHHHHHHH
Q 022234 263 --TASAAKRLGLKNVYYPTH-------PGLEGWVDSILEAL 294 (300)
Q Consensus 263 --Ta~~l~~~G~~~~~v~~~-------p~~~~l~~ai~~~~ 294 (300)
=.++++++|+.++++... .+.+++.+++....
T Consensus 212 ~~Ki~aA~eLgi~VI~I~Rp~~~~~~~~~v~~~~~~l~~~~ 252 (257)
T COG2099 212 YEKIEAARELGIPVIMIERPIDYPAGFGDVTDLDAALAQLR 252 (257)
T ss_pred HHHHHHHHHcCCcEEEEecCCcCCcccchhhHHHHHHHHHH
Confidence 246788999998655443 24456666555443
No 380
>PRK06849 hypothetical protein; Provisional
Probab=36.82 E-value=3.6e+02 Score=25.27 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=27.9
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHH----------HHHcCCCe
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASA----------AKRLGLKN 274 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~----------l~~~G~~~ 274 (300)
.++|+|+-++... .+.....+.-.....+++-++.+.+. ++++|+.+
T Consensus 75 ~~id~vIP~~e~~--~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~Gipv 131 (389)
T PRK06849 75 ENIDLLIPTCEEV--FYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSV 131 (389)
T ss_pred cCCCEEEECChHH--HhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCC
Confidence 4689999888654 34433322211245666677776644 67788863
No 381
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=36.80 E-value=1.1e+02 Score=26.79 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=39.3
Q ss_pred CCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH
Q 022234 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG 113 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av 113 (300)
..+|.|++|.+++.......+.+.|++.|+....+ +..... .......+..+..|+.+...+.+.
T Consensus 96 ~~dL~Gk~i~~~~~~~~~~~~~~~l~~~G~~~~~v---~~~~~~-~~~~~~al~~g~vda~~~~~p~~~ 160 (288)
T TIGR01728 96 VADLKGKRIAVPKGGSGHDLLLRALLKAGLSGDDV---TILYLG-PSDARAAFAAGQVDAWAIWEPWGS 160 (288)
T ss_pred HHHcCCCEEEecCCccHHHHHHHHHHHcCCCccce---eEEecC-cHHHHHHHHCCCCCEEEeccchHh
Confidence 35688999998876655556667888888754322 222222 233334445677887776655443
No 382
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=36.75 E-value=71 Score=29.97 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=41.0
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCCh-----hHHHHHHHhCCCeeEEEEeeeeeeCCCCcH---HHHHHc--CCCCEEE
Q 022234 163 GKILASELPKNGKKKCTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPVVA 232 (300)
Q Consensus 163 ~e~L~~~L~~~~~~~~~vL~~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~l--~~~d~Iv 232 (300)
.+.|.+.+.+. ..++++++.+.... +.+.+.|+++|+++ .+|.........+ +..+.+ .++|.||
T Consensus 11 l~~l~~~l~~~--~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~---~~~~~~~~~p~~~~v~~~~~~~~~~~~d~Ii 85 (370)
T cd08551 11 IEKLGEEIKNL--GGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEV---VIFDGVEPNPTLSNVDAAVAAYREEGCDGVI 85 (370)
T ss_pred HHHHHHHHHHc--CCCeEEEEeCcchhhCccHHHHHHHHHHcCCeE---EEECCCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 34555555543 23789988887543 37888899888765 3454332222222 222222 3788877
Q ss_pred -EEChHHHH
Q 022234 233 -VASPSAVR 240 (300)
Q Consensus 233 -ftS~s~v~ 240 (300)
+-..+..+
T Consensus 86 aiGGGs~~D 94 (370)
T cd08551 86 AVGGGSVLD 94 (370)
T ss_pred EeCCchHHH
Confidence 55545444
No 383
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=36.72 E-value=1.3e+02 Score=26.01 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=41.8
Q ss_pred CCCEEEEEcCCC-----ChhHHHHHHHhCCCe-eEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHH
Q 022234 176 KKCTVLYPASAK-----ASNEIEEGLSNRGFE-VVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSW 242 (300)
Q Consensus 176 ~~~~vL~~rg~~-----~~~~L~~~L~~~G~~-v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~ 242 (300)
.+.+|+++.... ..+.+.+.+++.|++ +..+.+.++.. ...+++.+.+.+.|+|+|+..++.+..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~--a~~~~~~~~l~~ad~I~~~GG~~~~~~ 98 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREA--ANDPEVVARLRDADGIFFTGGDQLRIT 98 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHH--cCCHHHHHHHHhCCEEEEeCCcHHHHH
Confidence 356777775543 345677788888975 55555544331 122344555678999999999987744
No 384
>PRK14738 gmk guanylate kinase; Provisional
Probab=36.70 E-value=2.6e+02 Score=23.68 Aligned_cols=40 Identities=8% Similarity=0.110 Sum_probs=28.5
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEee
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHA 85 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~ 85 (300)
.|..++.|+++.|.+ +...+.+.|.+.|..+......++.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr 49 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTR 49 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCC
Confidence 778899999999875 5678889998887654333333333
No 385
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=36.62 E-value=2.6e+02 Score=23.66 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHHH
Q 022234 177 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWVN 244 (300)
Q Consensus 177 ~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-----s~v~~~~~ 244 (300)
++++++.+... +...+...|+..|++|..+- . ..+.+++.+.. .++|+|.+++. ..++.+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG--~----~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~ 155 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG--R----DVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIE 155 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC--C----CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHH
Confidence 46787776653 35567788999998883332 1 22223344333 47888777662 33444555
Q ss_pred HhcccCC-CCceEEEeCHH-HHHHHHHcCCC
Q 022234 245 LISDTEQ-WSNSVACIGET-TASAAKRLGLK 273 (300)
Q Consensus 245 ~~~~~~~-~~~~vv~IG~~-Ta~~l~~~G~~ 273 (300)
.+++... .++++++=|+. +.+.+++.|..
T Consensus 156 ~lr~~~~~~~~~i~vGG~~~~~~~~~~~GaD 186 (201)
T cd02070 156 ALKEAGLRDKVKVMVGGAPVNQEFADEIGAD 186 (201)
T ss_pred HHHHCCCCcCCeEEEECCcCCHHHHHHcCCc
Confidence 5555432 36788887744 44556667764
No 386
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=36.35 E-value=4.1e+02 Score=25.83 Aligned_cols=211 Identities=16% Similarity=0.166 Sum_probs=105.3
Q ss_pred chHHHHHHHHhCCCCEEE-eeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEcc-ch
Q 022234 61 KNGKLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA-GT 137 (300)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~-~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~~~i~aVG~-~T 137 (300)
+..++.+.|++.|+++.. ++ .....+++. +.+..+.-+..++.....+.+.|++. +.+-..+-.+|- .|
T Consensus 213 d~~el~~lL~~~Gl~v~~~~~-----g~~s~~ei~---~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~~~~~~G~~~T 284 (457)
T TIGR01284 213 DLWVLKKYFERMGIQVLSTFT-----GNGCYDELR---WMHRAKLNVVRCARSANYIANELEERYGIPRLDIDFFGFEYC 284 (457)
T ss_pred hHHHHHHHHHHcCCeEEEEEC-----CCCCHHHHH---hccccCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHHHH
Confidence 457799999999999973 22 111223332 45566665555655556666666653 333222223554 46
Q ss_pred HHHHHHHhhccCCCccccccCCCCcHHHHHH--------hccc--CCCCCCEEEEEcCCCChhHHHHHHH-hCCCeeEEE
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKATGKILAS--------ELPK--NGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRL 206 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~--------~L~~--~~~~~~~vL~~rg~~~~~~L~~~L~-~~G~~v~~~ 206 (300)
.+.|++.. .+.|+. . ..+.+++ .|.. ....|+|+.+..+....-.+...|. +.|.++..+
T Consensus 285 ~~~l~~ia--~~~g~~-----~--~~e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~~~~~l~~~l~~ElGmevv~~ 355 (457)
T TIGR01284 285 AKNLRKIG--EFFGIE-----E--RAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGPKLWHWPRPLEDELGMEVVAV 355 (457)
T ss_pred HHHHHHHH--HHhCCc-----h--hHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 66666651 111432 1 1221111 1211 1136889988776655556777886 799988765
Q ss_pred EeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEe-c--CC--C
Q 022234 207 NTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYY-P--TH--P 281 (300)
Q Consensus 207 ~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v-~--~~--p 281 (300)
.++.. ......+....+ ..+.++.-.+...+ +.+.+.+. +..++.-|..-...+++.|+..+-+ . .. .
T Consensus 356 ~~~~~--~~~~~~~~~~~~-~~~~~~i~d~~~~e-~~~~i~~~---~pDllig~~~~~~~a~k~gip~~~~~~~~~~~~~ 428 (457)
T TIGR01284 356 STKFG--HEDDYEKIIARV-REGTVIIDDPNELE-LEEIIEKY---KPDIILTGIREGELAKKLGVPYINIHSYHNGPYI 428 (457)
T ss_pred EEEeC--CHHHHHHHHHhc-CCCeEEEeCCCHHH-HHHHHHhc---CCCEEEecCCcchhhhhcCCCEEEccccccCCcc
Confidence 44322 121112222222 22345555443322 32333322 2344555555566677778764221 1 12 2
Q ss_pred CHHHHHHHHHHHHH
Q 022234 282 GLEGWVDSILEALR 295 (300)
Q Consensus 282 ~~~~l~~ai~~~~~ 295 (300)
..++.++.+.+..+
T Consensus 429 Gy~G~~~l~~~i~n 442 (457)
T TIGR01284 429 GFEGFVNLARDMYN 442 (457)
T ss_pred chhhHHHHHHHHHH
Confidence 56676666665543
No 387
>TIGR00035 asp_race aspartate racemase.
Probab=36.30 E-value=92 Score=27.10 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=18.5
Q ss_pred CCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCC
Q 022234 227 SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLK 273 (300)
Q Consensus 227 ~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~ 273 (300)
+.|.|++.+ .++..|++.+++. -+++++.|.+.|++++++.|.+
T Consensus 75 g~d~iviaC-NTah~~~~~l~~~--~~iPii~i~~~~~~~~~~~~~~ 118 (229)
T TIGR00035 75 GADFIIMPC-NTAHKFAEDIQKA--IGIPLISMIEETAEAVKEDGVK 118 (229)
T ss_pred CCCEEEECC-ccHHHHHHHHHHh--CCCCEechHHHHHHHHHHcCCC
Confidence 445444444 2233334433331 1344444444444444444443
No 388
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=36.29 E-value=2.5e+02 Score=25.07 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHH
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSA 238 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~ 238 (300)
+|++|.+..+......+...|+..|.+...+.+... . +.+....+ +++|+++...|..
T Consensus 99 kGK~Igv~~~s~~~~~l~~~L~~~Gl~~~dv~~v~~---~--~~~~~~al~~G~vDa~~~~~p~~ 158 (300)
T TIGR01729 99 KGKNVAVPFVSTTHYSLLAALKHWKTDPREVNILNL---K--PPQIVAAWQRGDIDAAYVWPPAL 158 (300)
T ss_pred CCCEEEeCCCCcHHHHHHHHHHHcCCChhheEEEec---C--cHHHHHHHHcCCcCEEEEecHHH
Confidence 578999987766666677789888987655443322 1 12233333 6899998888754
No 389
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=36.19 E-value=67 Score=24.61 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=43.7
Q ss_pred CCCEEEEEChHHHHHHHHHhcccCC--CCceEEEeCHHHHHHHHHcCCCeEEecCCCCHH
Q 022234 227 SIPVVAVASPSAVRSWVNLISDTEQ--WSNSVACIGETTASAAKRLGLKNVYYPTHPGLE 284 (300)
Q Consensus 227 ~~d~IvftS~s~v~~~~~~~~~~~~--~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~ 284 (300)
+...+-|-+++++..|...++..+. ....++++.|..++.+...|+...++....+.+
T Consensus 50 Dls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p~v~~~~~~~gl~~~~~~~~~~~~ 109 (117)
T COG1366 50 DLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPEVARTLELTGLDKSFIITPTELE 109 (117)
T ss_pred ECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCchhhcccccchHH
Confidence 3456778999999999998776542 367888899999999999999865444433433
No 390
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=36.16 E-value=1.3e+02 Score=25.34 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=25.2
Q ss_pred CccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEccch
Q 022234 101 IFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 137 (300)
Q Consensus 101 ~~d~ivFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~T 137 (300)
..|.|+.++-.....+...+.+.+. .++.+++.+...
T Consensus 178 ~~~~i~~~~~~~a~~~~~~~~~~g~~i~~~i~i~~~d~~~ 217 (264)
T cd01537 178 DPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGTP 217 (264)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHhCCCCCCCeEEEeecCcc
Confidence 4888888886666666777777765 356666666544
No 391
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=35.96 E-value=4.4e+02 Score=26.04 Aligned_cols=141 Identities=18% Similarity=0.162 Sum_probs=78.2
Q ss_pred CchHHHHHHHHhCCCCEEEe-eeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEc-cc
Q 022234 60 GKNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 136 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~-P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~~~i~aVG-~~ 136 (300)
.+..++.+.|++.|+++..+ |. ....+++. +.+..+.-|..++..-....+.|++. +.+-+...-+| ..
T Consensus 175 ~D~~elkrlL~~lGi~vn~v~p~-----g~s~~dl~---~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG~~~ 246 (511)
T TIGR01278 175 HDLIELRRLLKTLGIEVNVVAPW-----GASIADLA---RLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIGVNA 246 (511)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC-----CCCHHHHH---hcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccCHHH
Confidence 35689999999999999764 53 11223332 34455555556665555556666443 43333345566 56
Q ss_pred hHHHHHHHhhc-cCCCccccccCCCCcHHH---------HHHhcccCCCCCCEEEEEcCCCChhHHHHHHH-hCCCeeEE
Q 022234 137 TASIFEEVIQS-SKCSLDVAFSPSKATGKI---------LASELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVR 205 (300)
Q Consensus 137 Ta~~L~~~~~~-~~~G~~~~~~p~~~~~e~---------L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~-~~G~~v~~ 205 (300)
|.+.|++.... +..|..+.. +.+-.+. +...+......|+++.+..+..-.-.+...|. +.|+.|..
T Consensus 247 T~~fL~~l~~~~~~~g~~~~~--e~~i~~e~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElG~~vv~ 324 (511)
T TIGR01278 247 TRRFIREIAALLNQAGADPYY--ESFILDGLSAVSQAAWFARSIDSQSLTGKRAFVFGDATHAVGMTKILARELGIHIVG 324 (511)
T ss_pred HHHHHHHHHHHHhhcCCCCcH--HHHHHhhhhhhhhHHHHHhhhhhHHhcCCeEEEEcCcHHHHHHHHHHHHhCCCEEEe
Confidence 77777777200 001332110 0000000 00011111236789998888777777888897 89999865
Q ss_pred EEeee
Q 022234 206 LNTYT 210 (300)
Q Consensus 206 ~~vY~ 210 (300)
.-+|.
T Consensus 325 ~gt~~ 329 (511)
T TIGR01278 325 AGTYC 329 (511)
T ss_pred cCCch
Confidence 55554
No 392
>PLN02672 methionine S-methyltransferase
Probab=35.91 E-value=3.9e+02 Score=29.30 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=41.2
Q ss_pred CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcC--CCCEEEEEChH-----------HHHH
Q 022234 175 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--SIPVVAVASPS-----------AVRS 241 (300)
Q Consensus 175 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~--~~d~IvftS~s-----------~v~~ 241 (300)
.+|..|+++.. .-..+....+..|+++..+++........+.+.+.+.+. .-.+|++.+|. ..+.
T Consensus 776 ~pGD~VLVp~P--tY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~ 853 (1082)
T PLN02672 776 QEGGTLCFPAG--SNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEE 853 (1082)
T ss_pred CCCCEEEEeCC--ChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHH
Confidence 35678888875 445566667778888887776422222222233333332 23467777765 5666
Q ss_pred HHHHhcc
Q 022234 242 WVNLISD 248 (300)
Q Consensus 242 ~~~~~~~ 248 (300)
+++.+.+
T Consensus 854 Llela~k 860 (1082)
T PLN02672 854 ILSVCAK 860 (1082)
T ss_pred HHHHHHH
Confidence 6666554
No 393
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=35.89 E-value=63 Score=25.54 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=26.3
Q ss_pred eCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 022234 259 IGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 259 IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~ 291 (300)
|||..-+.++++|+++ +..+.-+.+..++++.
T Consensus 74 iG~~a~~~l~~~GIkv-~~~~~~~V~e~i~~~~ 105 (121)
T COG1433 74 IGPNAYNALKAAGIKV-YVAPGGTVEEAIKAFL 105 (121)
T ss_pred cCHHHHHHHHHcCcEE-EecCCCCHHHHHHHHh
Confidence 8999999999999997 5566678887777664
No 394
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=35.86 E-value=1.4e+02 Score=27.89 Aligned_cols=106 Identities=12% Similarity=0.060 Sum_probs=69.2
Q ss_pred hhhhCCCCCCCCccccccccccc-cCCCCCCCeEEEeCCCCch-HHHHHHHHhCCCCEEEeeee-EeeeCCCchhHHHhh
Q 022234 21 RLRLNRPLPFQFSRIQASSDATS-ASASNSNPKVVVTRERGKN-GKLIKALAKHRIDCLELPLI-QHAQGPDTDRLSSVL 97 (300)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~VlitR~~~~~-~~l~~~L~~~G~~v~~~P~i-~~~~~~~~~~l~~~l 97 (300)
-+|+--.|+...-|+=.-.++++ ...+|.||||-+.-+.... ..+...|+.+|+......+- ..... + ....+
T Consensus 107 ~lr~v~~lype~~~vv~r~d~~Ikti~DL~GKrV~iG~~gSgt~~~a~~il~a~Gi~~~~~~~~~~~~~a---~-~~~~l 182 (321)
T COG2358 107 NLRAVAALYPEPFHVVTRKDAGIKTIADLKGKRVAIGPPGSGTEATARQILEALGITYDDYELDLGLGDA---E-SADAL 182 (321)
T ss_pred chhhheecccceEEEEEecCCCcceehhcCCCEEeecCCCCccHHHHHHHHHHcCCCCcchhhhhhcCch---h-hHHHh
Confidence 34444456655555545466777 6788999999999887644 46777788899999888884 22221 1 12234
Q ss_pred hcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEE
Q 022234 98 NDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 133 (300)
Q Consensus 98 ~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aV 133 (300)
..+..|..+++++.-.-...+..... +++++-+
T Consensus 183 ~~g~iDA~~~~~G~p~~ai~el~~~~---~i~lv~i 215 (321)
T COG2358 183 KNGTIDAAFYVAGVPNPAISELATTC---DIVLVPI 215 (321)
T ss_pred hCCcccEEEEecCCCCccHHHHHhhC---CeEEEeC
Confidence 57889999999987666664433222 4555554
No 395
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=35.85 E-value=1.9e+02 Score=25.23 Aligned_cols=107 Identities=10% Similarity=0.135 Sum_probs=51.4
Q ss_pred EEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHH--HHHHHHhcccCCCCceE
Q 022234 179 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAV--RSWVNLISDTEQWSNSV 256 (300)
Q Consensus 179 ~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v--~~~~~~~~~~~~~~~~v 256 (300)
++++.+.......+.+.....|..- .+..+.. .+++.+.+...|++++.|...- -.+++.+. -++++
T Consensus 211 ~l~i~G~~~~~~~~~~~~~~~~~~~-~v~~~g~------~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a----~G~Pv 279 (348)
T cd03820 211 KLRIVGDGPEREALEALIKELGLED-RVILLGF------TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMA----FGLPV 279 (348)
T ss_pred EEEEEeCCCCHHHHHHHHHHcCCCC-eEEEcCC------cchHHHHHHhCCEEEeCccccccCHHHHHHHH----cCCCE
Confidence 5555554444555555455544321 1111111 1123333457788888774210 01222221 25666
Q ss_pred EEeC-HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 257 ACIG-ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 257 v~IG-~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
++.. ......+.+.|..- ++.+..+.++++++|.+.+..+
T Consensus 280 i~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 280 ISFDCPTGPSEIIEDGVNG-LLVPNGDVEALAEALLRLMEDE 320 (348)
T ss_pred EEecCCCchHhhhccCcce-EEeCCCCHHHHHHHHHHHHcCH
Confidence 6642 12223333434222 3445668899999999887654
No 396
>PRK12742 oxidoreductase; Provisional
Probab=35.76 E-value=2e+02 Score=24.32 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=25.6
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEE
Q 022234 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (300)
Q Consensus 47 ~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~ 78 (300)
++.|++||||.... =...+++.|.++|++++.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~ 35 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRF 35 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 46799999998754 356899999999998764
No 397
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=35.75 E-value=2.5e+02 Score=23.17 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=61.9
Q ss_pred EEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC-CCCCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEE
Q 022234 130 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG-KKKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 130 i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~-~~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~ 207 (300)
+++=|.....+++.. |.+ .+...++-+|...+-+.. ..+.++.++.+... .+.+.+.|++.--.+ .+.
T Consensus 7 ~~~DG~~l~~~~~~~------~~~---~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l-~i~ 76 (171)
T cd06533 7 VLPDGIGVVWAARLL------GGP---LPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGL-KIV 76 (171)
T ss_pred EecCcHHHHHHHHHc------CCC---CCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCc-EEE
Confidence 556677777777776 664 234455555555544332 24678988887765 445555677652222 222
Q ss_pred eeeeeeCCCCc-HHHHHHc--CCCCEEEE--EChHHHHHHHHHhcccCCCCceEEEeCH
Q 022234 208 TYTTEPVHHVD-QTVLKQA--LSIPVVAV--ASPSAVRSWVNLISDTEQWSNSVACIGE 261 (300)
Q Consensus 208 vY~~~~~~~~~-~~~~~~l--~~~d~Ivf--tS~s~v~~~~~~~~~~~~~~~~vv~IG~ 261 (300)
-|..-+..... .++++.+ .++|+|++ .+|.+= .|+...... +....++|+|.
T Consensus 77 g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~-l~~~v~~~vG~ 133 (171)
T cd06533 77 GYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQE-LWIARHKDR-LPVPVAIGVGG 133 (171)
T ss_pred EecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHH-CCCCEEEEece
Confidence 22222222221 2233433 36776554 466654 444444332 23456777875
No 398
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.68 E-value=3.4e+02 Score=24.74 Aligned_cols=147 Identities=18% Similarity=0.105 Sum_probs=78.5
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh----hcCCccEEEEeChHH--H--HHHHHHHHH-cCCCCceEEEEcc
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL----NDTIFDWIIITSPEA--G--SVFLEAWKE-AGTPNVRIGVVGA 135 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l----~~~~~d~ivFTS~~a--v--~~~~~~l~~-~~~~~~~i~aVG~ 135 (300)
-.+..++.|+++..+-+-+. ...+++.+.+ .+...|.|+.--|-- + ...++.+.. ...|++.-+-.|
T Consensus 52 k~k~a~~~Gi~~~~~~l~~~---~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g- 127 (281)
T PRK14183 52 KAKACDRVGIYSITHEMPST---ISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVG- 127 (281)
T ss_pred HHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhh-
Confidence 34556677988755443111 1223344344 357789999988742 2 122222211 112333333333
Q ss_pred chHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeee
Q 022234 136 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 136 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.|. . |- ..+.|- |+.+.++.|..+. ..|++++++ ||.....-|...|.++|+.|+.+.-++
T Consensus 128 ----~l~-~------g~-~~~~Pc--Tp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T-- 191 (281)
T PRK14183 128 ----RLV-T------GL-DGFVPC--TPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT-- 191 (281)
T ss_pred ----HHh-c------CC-CCCCCC--cHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--
Confidence 111 2 32 234554 5778887776553 378888888 665666678888988999886332211
Q ss_pred eCCCCcHHHHHHcCCCCEEEEEChH
Q 022234 213 PVHHVDQTVLKQALSIPVVAVASPS 237 (300)
Q Consensus 213 ~~~~~~~~~~~~l~~~d~IvftS~s 237 (300)
.. +.+...+.|+|+-.-+.
T Consensus 192 ---~~---l~~~~~~ADIvV~AvGk 210 (281)
T PRK14183 192 ---KD---LKAHTKKADIVIVGVGK 210 (281)
T ss_pred ---cC---HHHHHhhCCEEEEecCc
Confidence 11 12223567877766543
No 399
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.58 E-value=2.7e+02 Score=23.78 Aligned_cols=75 Identities=9% Similarity=0.050 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCC--chhHHHhhh-cCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEccc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 136 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~--~~~l~~~l~-~~~~d~ivFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 136 (300)
.-+.+.++++|.+....-.+......+ ...+...+. ...+|+|+.++...+..+.+.+++.+. +++.+++.+..
T Consensus 137 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~~g~~~p~di~iig~d~~ 216 (268)
T cd06289 137 AGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDV 216 (268)
T ss_pred HHHHHHHHHcCCCCCchhEEecCcchhhHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 455567777774422111111110011 123334442 246899988888877778888887765 36677777764
Q ss_pred h
Q 022234 137 T 137 (300)
Q Consensus 137 T 137 (300)
.
T Consensus 217 ~ 217 (268)
T cd06289 217 A 217 (268)
T ss_pred h
Confidence 3
No 400
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.57 E-value=3.4e+02 Score=24.73 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=78.0
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh----hcCCccEEEEeChHH--H--HHHHHHHHH-cCCCCceEEEEcc
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL----NDTIFDWIIITSPEA--G--SVFLEAWKE-AGTPNVRIGVVGA 135 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l----~~~~~d~ivFTS~~a--v--~~~~~~l~~-~~~~~~~i~aVG~ 135 (300)
-.+..++.|+++..+-+-+. ...+++.+.+ .+.+.|.|+.--|-- + +..++.+.. ...|+..-.-.|.
T Consensus 51 k~k~a~~~Gi~~~~~~l~~~---~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~ 127 (282)
T PRK14166 51 KAKACEECGIKSLVYHLNEN---TTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGY 127 (282)
T ss_pred HHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHH
Confidence 34556677888766554221 1123344344 356789999887732 2 122222211 1112333222221
Q ss_pred chHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeee
Q 022234 136 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 136 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
|- . |....+.|- |+.+.++.|..+. ..|++++++ ||.....-|...|.++|+.|+.+.-++.
T Consensus 128 -----l~-~------g~~~~~~Pc--Tp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~- 192 (282)
T PRK14166 128 -----LN-L------GLESGFLPC--TPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK- 192 (282)
T ss_pred -----Hh-c------CCCCCCcCC--CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC-
Confidence 11 2 422234544 5777887776543 368888777 7777777788889889988875543321
Q ss_pred eCCCCcHHHHHHcCCCCEEEEECh
Q 022234 213 PVHHVDQTVLKQALSIPVVAVASP 236 (300)
Q Consensus 213 ~~~~~~~~~~~~l~~~d~IvftS~ 236 (300)
. +.+...+.|+++-.-+
T Consensus 193 ----n---l~~~~~~ADIvIsAvG 209 (282)
T PRK14166 193 ----D---LSLYTRQADLIIVAAG 209 (282)
T ss_pred ----C---HHHHHhhCCEEEEcCC
Confidence 1 1112346677665543
No 401
>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle. This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models.
Probab=35.57 E-value=58 Score=21.85 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=28.7
Q ss_pred CHHHHHHHHHcCCC----eEEecCCCCHHHHHHHHHHHH
Q 022234 260 GETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEAL 294 (300)
Q Consensus 260 G~~Ta~~l~~~G~~----~~~v~~~p~~~~l~~ai~~~~ 294 (300)
-+...+.++.+|++ .++.++.|+..+|++.+..++
T Consensus 13 ~~~~r~tl~~LgL~k~~~~v~~~dtp~irGMi~kV~~lV 51 (55)
T TIGR01308 13 PKKQRKTLKALGLRKIGRQVVLEDNPAIRGMVNKVKHLV 51 (55)
T ss_pred CHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHheE
Confidence 46677888888985 468899999999999987765
No 402
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=35.52 E-value=1.4e+02 Score=27.72 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=31.1
Q ss_pred HHHHHhcccCCCCCCEEEEEcCCCC-hhHHHHHHHhCCCeeEEE
Q 022234 164 KILASELPKNGKKKCTVLYPASAKA-SNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 164 e~L~~~L~~~~~~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~ 206 (300)
+.+..++.+.. .+.||+++|..+ .++..+.|+..|+.|.++
T Consensus 65 es~~~eI~~ln--pd~VLIIGGp~AVs~~yE~~Lks~GitV~Ri 106 (337)
T COG2247 65 ESVLDEIIELN--PDLVLIIGGPIAVSPNYENALKSLGITVKRI 106 (337)
T ss_pred HHHHHHHHhhC--CceEEEECCCCcCChhHHHHHHhCCcEEEEe
Confidence 55555665553 369999999886 888999999999887554
No 403
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=35.50 E-value=1.4e+02 Score=28.83 Aligned_cols=88 Identities=14% Similarity=0.048 Sum_probs=50.7
Q ss_pred CcHHHHHHhcccCCCCCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc---CCCCE-E
Q 022234 161 ATGKILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPV-V 231 (300)
Q Consensus 161 ~~~e~L~~~L~~~~~~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l---~~~d~-I 231 (300)
..+..+++.+.... -++|.++..+. ..+.+.+.+++.|+.|.....|.......+....++.+ .+.++ |
T Consensus 160 ~qa~ai~~ll~~~~--W~~Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVv 237 (458)
T cd06375 160 YQAKAMAEILRFFN--WTYVSTVASEGDYGETGIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVV 237 (458)
T ss_pred HHHHHHHHHHHHCC--CeEEEEEEeCchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 34566776664432 25676664432 35677788888897765544443222111112233333 36775 6
Q ss_pred EEEChHHHHHHHHHhcccC
Q 022234 232 AVASPSAVRSWVNLISDTE 250 (300)
Q Consensus 232 vftS~s~v~~~~~~~~~~~ 250 (300)
++.+...+..++..+.+.+
T Consensus 238 l~~~~~~~~~ll~~a~~~g 256 (458)
T cd06375 238 LFTRSEDARELLAAAKRLN 256 (458)
T ss_pred EecChHHHHHHHHHHHHcC
Confidence 7777888888888777654
No 404
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=35.50 E-value=93 Score=26.68 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCC--chhHHHhhhc-CCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEccc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLND-TIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 136 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~--~~~l~~~l~~-~~~d~ivFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 136 (300)
..+.+.|+++|.++.. .+......+ .+.+.+.+.. ...|+|+.++......+.+.+.+.+. +++.+++.+..
T Consensus 137 ~gf~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p~di~v~g~d~~ 214 (266)
T cd06282 137 AGYRAAMRAAGLAPLP--PVEIPFNTAALPSALLALLTAHPAPTAIFCSNDLLALAVIRALRRLGLRVPDDLSVVGFDGI 214 (266)
T ss_pred HHHHHHHHHcCCCCCc--cccCCCcHHHHHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeecch
Confidence 3445667777765432 111111111 1223333322 35789999888877778888888775 35666666543
No 405
>PLN02240 UDP-glucose 4-epimerase
Probab=35.49 E-value=1.6e+02 Score=26.82 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=25.8
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEe
Q 022234 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 48 l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (300)
+.+++|+||...+ -...+++.|.++|.+|+.+
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~ 35 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVI 35 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 5689999998754 3568899999999988766
No 406
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=35.48 E-value=2.1e+02 Score=28.06 Aligned_cols=127 Identities=18% Similarity=0.159 Sum_probs=73.8
Q ss_pred CcHHHHHHhcccCCCCCCEEEEEcCCCC---hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChH
Q 022234 161 ATGKILASELPKNGKKKCTVLYPASAKA---SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 237 (300)
Q Consensus 161 ~~~e~L~~~L~~~~~~~~~vL~~rg~~~---~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s 237 (300)
++.+.+++.|.++.. .-+++++|+.. ...|.++++++|.++..+-+=+|..++... .| -.|--.+
T Consensus 163 ~~~~~iv~~L~~~~I--~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~---------td-~S~GFdT 230 (459)
T PTZ00286 163 FDPKVMVDTLIRHGI--NILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPI---------ID-ESFGFQT 230 (459)
T ss_pred hhHHHHHHHHHHcCC--CEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCC---------cc-cCcCchH
Confidence 345667777776542 46777777764 446778888888666556665565444321 11 2333334
Q ss_pred HHHHHHHHhcccC-----CC-Cc-eEEEeCHHHHHHHH----HcC-CCeEEecCCC-CHHHHHHHHHHHHHccCC
Q 022234 238 AVRSWVNLISDTE-----QW-SN-SVACIGETTASAAK----RLG-LKNVYYPTHP-GLEGWVDSILEALREHGH 299 (300)
Q Consensus 238 ~v~~~~~~~~~~~-----~~-~~-~vv~IG~~Ta~~l~----~~G-~~~~~v~~~p-~~~~l~~ai~~~~~~~~~ 299 (300)
+++...+.+.... .. .+ .+=+||..+.-.+. ..| ...+++|+.| +.+++++.|++.+..+++
T Consensus 231 Av~~~~~aI~~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f~l~~ll~~l~~r~~~~~~ 305 (459)
T PTZ00286 231 AVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDIPLEGVLEYIEQRLQKKGH 305 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCCCCHHHHHHHHHHHHhcCCc
Confidence 4444444333211 11 23 23367866533322 233 6677899884 889999999988876553
No 407
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.48 E-value=1.6e+02 Score=25.76 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=60.9
Q ss_pred CCCCCCeEEEeCC--CCchHHHHHHHHhCCCCEEEeeeeEeeeCCCch--------hHHHhhhcCCccEEEEeChHHHHH
Q 022234 46 ASNSNPKVVVTRE--RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTD--------RLSSVLNDTIFDWIIITSPEAGSV 115 (300)
Q Consensus 46 ~~l~g~~VlitR~--~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~--------~l~~~l~~~~~d~ivFTS~~av~~ 115 (300)
+.|.-+||.+.-| .+-+....+.|+.+|++++.+-.+.+...-+.. .+...+..+++|+|++. -..++.
T Consensus 114 ~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS-CTnlRt 192 (238)
T COG3473 114 NALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS-CTNLRT 192 (238)
T ss_pred HhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEEE-eecccc
Confidence 4455677776655 566788999999999999998888776432211 11111224678887653 555555
Q ss_pred HHHHHHHcC-CCCceEEEEccchHH-HHHHHhhccCCCccc
Q 022234 116 FLEAWKEAG-TPNVRIGVVGAGTAS-IFEEVIQSSKCSLDV 154 (300)
Q Consensus 116 ~~~~l~~~~-~~~~~i~aVG~~Ta~-~L~~~~~~~~~G~~~ 154 (300)
|.-. .+.. --+++++.-..+|.- +|+.. |++.
T Consensus 193 ~eii-~~lE~~~G~PVvsSN~AT~W~~Lr~~------g~~~ 226 (238)
T COG3473 193 FEII-EKLERDTGVPVVSSNQATLWMALRLI------GLRE 226 (238)
T ss_pred HHHH-HHHHHHhCCceeeccHHHHHHHHHHc------CCcc
Confidence 4321 1111 126777777777654 45555 7764
No 408
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=35.46 E-value=3.5e+02 Score=24.76 Aligned_cols=210 Identities=9% Similarity=0.040 Sum_probs=112.2
Q ss_pred CCCCCCeEEEeCCCC--chHHH------HHHHHhCCCCE--EEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHH
Q 022234 46 ASNSNPKVVVTRERG--KNGKL------IKALAKHRIDC--LELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSV 115 (300)
Q Consensus 46 ~~l~g~~VlitR~~~--~~~~l------~~~L~~~G~~v--~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~ 115 (300)
.+++|+.|++..+.. .++.+ .+.+++.|+.- ..+|.+--... | +....+ .+-+++.
T Consensus 34 ~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQ-D-----r~~~~~--------e~isak~ 99 (302)
T PLN02369 34 ESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYFGYARA-D-----RKTQGR--------ESIAAKL 99 (302)
T ss_pred CCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeeccccccc-c-----cccCCC--------CCchHHH
Confidence 456788888876632 23444 45667888874 34555433221 1 111111 2335566
Q ss_pred HHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHH
Q 022234 116 FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEG 195 (300)
Q Consensus 116 ~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~ 195 (300)
+.+.+...+. -+++++-..+.+ ++.+| .+.++.. .....++++|.+....+..++++.-..+.-.+.+.
T Consensus 100 va~lL~~~g~--d~vi~vDlHs~~-i~~~F-----~ip~~~l---~~~~~~~~~i~~~~~~~~~~vvVspd~gg~~~a~~ 168 (302)
T PLN02369 100 VANLITEAGA--DRVLACDLHSGQ-SMGYF-----DIPVDHV---YGQPVILDYLASKTISSPDLVVVSPDVGGVARARA 168 (302)
T ss_pred HHHHHHhcCC--CEEEEEECCchH-Hhhcc-----CCceecc---cchHHHHHHHHHhCCCCCceEEEEECcChHHHHHH
Confidence 6666666554 367788777644 45553 4333211 22345666665432222466777777776666665
Q ss_pred HHh-C-CCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEE----EEChHHHHHHHHHhcccCCCCceEEE----eCHHHHH
Q 022234 196 LSN-R-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA----VASPSAVRSWVNLISDTEQWSNSVAC----IGETTAS 265 (300)
Q Consensus 196 L~~-~-G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~Iv----ftS~s~v~~~~~~~~~~~~~~~~vv~----IG~~Ta~ 265 (300)
+.+ . ++.+..+.-|+........-.....+.+-++|+ .+++.++....+.+.+.+..++.++| ..+...+
T Consensus 169 ~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~ 248 (302)
T PLN02369 169 FAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAIE 248 (302)
T ss_pred HHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHHHHH
Confidence 543 2 456666666553221110000000122223443 47888888888888876645566666 3455666
Q ss_pred HHHHcCCCeEEecCC
Q 022234 266 AAKRLGLKNVYYPTH 280 (300)
Q Consensus 266 ~l~~~G~~~~~v~~~ 280 (300)
.+.+.++..+++.+.
T Consensus 249 ~l~~~~~~~iv~t~t 263 (302)
T PLN02369 249 RLSSGLFQEVIVTNT 263 (302)
T ss_pred HHHhCCCCEEEEeCC
Confidence 777767876655554
No 409
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=35.45 E-value=1.4e+02 Score=26.03 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=40.9
Q ss_pred cCCCCEEEEEChHHHHHHHHHhcccC---CCCceEEEeCHHHHHHHHHcCCCe
Q 022234 225 ALSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~~~~~~~~---~~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
+.+-+.|.+-|++++..+.+.+.+.. ..++.+++-+..|+..+++.|++.
T Consensus 13 I~~g~~I~ldsGST~~~~~~~L~~~~~~~~l~itvVt~S~~~a~~l~~~gi~v 65 (218)
T TIGR00021 13 VEDGMVVGLGTGSTVAYFIEALGERVKQEGLDIVGVPTSKQTAELARELGIPL 65 (218)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhhhccCCCEEEEeCCHHHHHHHHHCCCCE
Confidence 46778999999999999988886531 116789999999999999999875
No 410
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=35.45 E-value=4.3e+02 Score=25.73 Aligned_cols=192 Identities=16% Similarity=0.120 Sum_probs=102.0
Q ss_pred CchHHHHHHHHhCCCCEEEeeeeE------------eeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCC
Q 022234 60 GKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTP 126 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~i~------------~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~ 126 (300)
.+-.++.+.|+..|+++..+|-+. ..+..+ ..+.+.-+.++...-+..++.+ ..+.+.|++. +.+
T Consensus 182 ~D~~elk~lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg-~t~eei~~~~~A~lniv~~~~~-~~~a~~Lee~~GiP 259 (455)
T PRK14476 182 GDIEELREIIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLGG-TTLEEIRELGRSAATIAIGESM-RKAAEALEARTGVP 259 (455)
T ss_pred ccHHHHHHHHHHcCCceEEecCccccccCCCCCcccccCCCC-CCHHHHHhhccCcEEEEecHHH-HHHHHHHHHHhCCC
Confidence 456899999999999998887542 011111 1233333445555555567654 4666667653 332
Q ss_pred CceE-EEEcc-chHHHHHHHhhccCCCccccccCCCCc--HHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCC
Q 022234 127 NVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG 200 (300)
Q Consensus 127 ~~~i-~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G 200 (300)
-+.. .-+|- .|.+.|++.. .+-|.. .|.... -..+.+.+.+. ...|+++.+..+....-.|...|.+.|
T Consensus 260 ~~~~~~p~G~~~t~~~l~~l~--~~~g~~---~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~la~~L~elG 334 (455)
T PRK14476 260 YLVFPSLTGLEAVDRFIATLA--QISGRP---VPAKYRRQRAQLQDAMLDGHFYFGGKRVAIAAEPDLLLALGSFLAEMG 334 (455)
T ss_pred eEecCCCcChHHHHHHHHHHH--HHHCCC---CcHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHHCC
Confidence 1111 12554 5667776652 111432 122111 11233333321 125789888876666677889999999
Q ss_pred CeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCe
Q 022234 201 FEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 201 ~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
..+..+.+... . + ..+.+. .+-++......++. .+. +..++.-|......++++|...
T Consensus 335 ~~v~~~~~~~~---~---~-~~~~~~-~~~i~~~D~~~le~---~~~-----~~dliig~s~~~~~a~~~gip~ 392 (455)
T PRK14476 335 AEIVAAVTTTK---S---P-ALEDLP-AEEVLIGDLEDLEE---LAE-----GADLLITNSHGRQAAERLGIPL 392 (455)
T ss_pred CEEEEEEeCCC---c---H-HHHhCC-cCcEEeCCHHHHHH---hcc-----CCCEEEECchhHHHHHHcCCCE
Confidence 99877666431 1 1 122232 23344554443333 222 3345555556667777777653
No 411
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=35.36 E-value=63 Score=23.58 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=43.5
Q ss_pred CCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHH
Q 022234 186 AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTAS 265 (300)
Q Consensus 186 ~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~ 265 (300)
+.+-.++.+.|+++|++|..+.-+. .+.++|+++.|--.. -+..|..++
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~~~-------------~~~~~daiVvtG~~~----------------n~mg~~d~~-- 55 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLENEQ-------------DLQNVDAIVVTGQDT----------------NMMGIQDTS-- 55 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCCcc-------------ccCCcCEEEEECCCc----------------ccccccccc--
Confidence 3456688999999997775554111 135899999985221 111121111
Q ss_pred HHHHcCCCeEEecCCCCHHHHHHHHHHHH
Q 022234 266 AAKRLGLKNVYYPTHPGLEGWVDSILEAL 294 (300)
Q Consensus 266 ~l~~~G~~~~~v~~~p~~~~l~~ai~~~~ 294 (300)
... +++-+..-|.+.+.+.+++.+
T Consensus 56 ----~~~-pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 56 ----TKV-PVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred ----cCc-eEEecCCCCHHHHHHHHHHhh
Confidence 011 456677778888888777654
No 412
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.32 E-value=1.5e+02 Score=29.80 Aligned_cols=138 Identities=12% Similarity=-0.001 Sum_probs=0.0
Q ss_pred EEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEE
Q 022234 104 WIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYP 183 (300)
Q Consensus 104 ~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~ 183 (300)
+||..++-+..--...+++.. +...|+|.|. |...|.++ |+.||++-.-.-.+-..+.+.... ++.+.+.
T Consensus 227 aiIVSaGPSL~Kql~lLK~y~-~k~~IFcads-al~~L~k~------GIkPDyVc~ld~~di~~e~~~n~~--~k~ip~~ 296 (594)
T COG2604 227 AIIVSAGPSLEKQLPLLKKYQ-DKATIFCADS-ALPILAKH------GIKPDYVCSLDPDDIAYEFFQNDF--NKDIPLI 296 (594)
T ss_pred eEEEcCCcChhhccHHHHhcc-cceEEEECCC-cchHHHhc------CCCCCeEEEecchHHHHHHHhccc--CCCccee
Q ss_pred cCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHH
Q 022234 184 ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETT 263 (300)
Q Consensus 184 rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~T 263 (300)
..........+.++..-+-+.+...|.......+ ...+.+.++.+...+.+.... ..-+++-||.--
T Consensus 297 ~~~~~h~~vv~~~kg~k~~~~~~~~~~~~~~l~d-----------~gyi~~G~SVah~~~~LA~~l--g~k~IIfIGQDl 363 (594)
T COG2604 297 LASITHPRVVEYLKGNKIFFFRDGGFSARFNLND-----------FGYIDTGGSVAHMCYELAVYL--GFKNIIFIGQDL 363 (594)
T ss_pred eeccccHHHHHhhccCcEEEEecchHHHHhccCC-----------cceeeccccHHHHHHHHHHHh--CCCcEEEEehhh
Q ss_pred H
Q 022234 264 A 264 (300)
Q Consensus 264 a 264 (300)
|
T Consensus 364 A 364 (594)
T COG2604 364 A 364 (594)
T ss_pred h
No 413
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=35.31 E-value=60 Score=24.26 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=23.5
Q ss_pred EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHH
Q 022234 258 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 289 (300)
Q Consensus 258 ~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~a 289 (300)
-||+.....|++.|+++...+..-+.+..++.
T Consensus 69 ~iG~~a~~~L~~~GI~v~~~~~~~~v~eal~~ 100 (102)
T cd00853 69 AIGGPAAARLVRAGIHPIKVPEGEPIAELLEE 100 (102)
T ss_pred hcChhHHHHHHHcCCEEEEcCCCCcHHHHHHh
Confidence 39999999999999998544433456665554
No 414
>PLN02384 ribose-5-phosphate isomerase
Probab=35.27 E-value=1.3e+02 Score=27.22 Aligned_cols=50 Identities=18% Similarity=0.034 Sum_probs=39.4
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccC----CCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTE----QWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~----~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
.+-.+|=+-|.+++..|++.+.+.. +.++..++.+..|+..|+++|+...
T Consensus 48 ~~gmvVGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~T~~~a~~~GIpl~ 101 (264)
T PLN02384 48 ESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLS 101 (264)
T ss_pred cCCCEEEecchHHHHHHHHHHHHhhhhccccceEEEcCcHHHHHHHHHcCCcEe
Confidence 4556788899999999988776532 2247788899999999999999853
No 415
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=35.05 E-value=2e+02 Score=21.73 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHH-HH---HHHHcCCCCceEEEEccchH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVF-LE---AWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~-~~---~l~~~~~~~~~i~aVG~~Ta 138 (300)
.-++..+++.|+++..+..- . ..+.+.+.+...++|.|.|++...-... .+ .+++....++++++-|+...
T Consensus 17 ~~~~~~l~~~G~~v~~l~~~----~-~~~~~~~~i~~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~~~t 91 (125)
T cd02065 17 NIVAIALRDNGFEVIDLGVD----V-PPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGAHPT 91 (125)
T ss_pred HHHHHHHHHCCCEEEEcCCC----C-CHHHHHHHHHHcCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCCcCC
Confidence 45677899999999988431 1 2233444444578999999887765431 11 12222222688888886643
No 416
>PRK07206 hypothetical protein; Provisional
Probab=34.97 E-value=3.9e+02 Score=25.16 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=21.4
Q ss_pred CEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 022234 178 CTVLYPASAKASNEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 178 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 207 (300)
+++|++.+......+.+.+++.|+++..+.
T Consensus 3 k~~liv~~~~~~~~~~~a~~~~G~~~v~v~ 32 (416)
T PRK07206 3 KKVVIVDPFSSGKFLAPAFKKRGIEPIAVT 32 (416)
T ss_pred CeEEEEcCCchHHHHHHHHHHcCCeEEEEE
Confidence 577888777666677778888887765443
No 417
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=34.91 E-value=2e+02 Score=25.41 Aligned_cols=75 Identities=9% Similarity=0.113 Sum_probs=45.5
Q ss_pred HHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEECh
Q 022234 164 KILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 236 (300)
Q Consensus 164 e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~ 236 (300)
+...+.+.+....+++|+|+--... -+...+.+++.|+.+..+...+ +..+.+...|+|+++-.
T Consensus 18 ~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~---------d~~~~l~~ad~I~v~GG 88 (233)
T PRK05282 18 EHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA---------DPVAAIENAEAIFVGGG 88 (233)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch---------hhHHHHhcCCEEEECCc
Confidence 4444444443224578887755432 2236678889999887775542 12334568899999988
Q ss_pred HHHHHHHHHhcc
Q 022234 237 SAVRSWVNLISD 248 (300)
Q Consensus 237 s~v~~~~~~~~~ 248 (300)
++.... +.+++
T Consensus 89 nt~~l~-~~l~~ 99 (233)
T PRK05282 89 NTFQLL-KQLYE 99 (233)
T ss_pred cHHHHH-HHHHH
Confidence 887744 44443
No 418
>PLN02778 3,5-epimerase/4-reductase
Probab=34.87 E-value=1.4e+02 Score=26.93 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=36.4
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC
Q 022234 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS 109 (300)
Q Consensus 50 g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS 109 (300)
+|+||||...+ =...+++.|.++|.+|... .....+.+.+...+....+|.||-..
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~----~~~~~~~~~v~~~l~~~~~D~ViH~A 65 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYG----SGRLENRASLEADIDAVKPTHVFNAA 65 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEe----cCccCCHHHHHHHHHhcCCCEEEECC
Confidence 47899999876 3568999999999987532 11223334444444444688888433
No 419
>PRK05611 rpmD 50S ribosomal protein L30; Reviewed
Probab=34.64 E-value=68 Score=21.84 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=29.9
Q ss_pred eCHHHHHHHHHcCCC----eEEecCCCCHHHHHHHHHHHH
Q 022234 259 IGETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEAL 294 (300)
Q Consensus 259 IG~~Ta~~l~~~G~~----~~~v~~~p~~~~l~~ai~~~~ 294 (300)
..+..-+.++.+|++ .++.++.|+..++++.+..++
T Consensus 15 ~~~~~r~tl~~LgL~k~~~~v~~~dtp~~rGmi~kV~~lV 54 (59)
T PRK05611 15 RKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLV 54 (59)
T ss_pred CCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHhhE
Confidence 356778889999996 468899999999999998765
No 420
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=34.46 E-value=3.7e+02 Score=24.66 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=37.6
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCC-CCcHHHHHHcCCCCEEEEEChHHHH
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH-HVDQTVLKQALSIPVVAVASPSAVR 240 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~-~~~~~~~~~l~~~d~IvftS~s~v~ 240 (300)
.|+++.+++-..-...+.+.++.-|.+|..+.-|...... .....+-+.+..-|+|++.-|.+-+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~ 209 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEK 209 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCch
Confidence 6788888876655667788898888766443332111000 0011222334677999888776544
No 421
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=34.31 E-value=2.7e+02 Score=25.36 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=5.3
Q ss_pred EEEeCHHHHHHHH
Q 022234 256 VACIGETTASAAK 268 (300)
Q Consensus 256 vv~IG~~Ta~~l~ 268 (300)
++++.+.-.+.+.
T Consensus 196 ~l~~~~~~~~~~~ 208 (356)
T cd06451 196 PIAFSERALERIK 208 (356)
T ss_pred eeEECHHHHHHHH
Confidence 3334444444443
No 422
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=34.23 E-value=3.6e+02 Score=24.53 Aligned_cols=228 Identities=14% Similarity=0.106 Sum_probs=109.6
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEee-------eeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELP-------LIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA 123 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P-------~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~ 123 (300)
.+|-...+---+..-.+.|+++|..++.-. ..-+....-..+..+.+.......|=-|=|. |....+...+.
T Consensus 29 ~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~~~~~~~g~~ViirAHGv~~~~~~~l~~~g~~viDaTCP~-V~k~~~~v~~~ 107 (281)
T PF02401_consen 29 GPVYTLGPIIHNPQVVERLEKRGVKVVDDIDEVPEGDTVIIRAHGVPPEVYEELKERGLEVIDATCPF-VKKIHKIVRKY 107 (281)
T ss_dssp S-EEECS-SSS-HHHHHHHHHCTEEEESSGCGS-TTEEEEE-TT---HHHHHHHHHTTEEEEE---HH-HHHHHHHHHHH
T ss_pred CCEEEecCcccCHHHHHHHHHCCCEEecCccccCCCCEEEEeCCCCCHHHHHHHHHcCCEEEECCChh-HHHHHHHHHHH
Confidence 478888888888999999999998876431 0001111011112222222223322222222 22222222222
Q ss_pred CCCCceEEEEccchHHHHHHHhhccCCCccc----cccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCCh----hHHHHH
Q 022234 124 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDV----AFSPSKATGKILASELPKNGKKKCTVLYPASAKAS----NEIEEG 195 (300)
Q Consensus 124 ~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~----~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~----~~L~~~ 195 (300)
..++..++.+|.......+... |+-. .++ .+.+++ +.|+.. ..+++.++.--.-+ ..+.+.
T Consensus 108 ~~~Gy~iviiG~~~HpEv~gi~-----g~~~~~~~~vv---~~~~~~-~~l~~~--~~~kv~vvsQTT~~~~~~~~i~~~ 176 (281)
T PF02401_consen 108 AKEGYQIVIIGDKNHPEVIGIL-----GYAPEEKAIVV---ESPEDV-EKLPIS--DPKKVAVVSQTTQSVEKFEEIVEA 176 (281)
T ss_dssp HHCT-EEEEES-TT-HHHHHHH-----CCHHTS-EEEE---SSHHHH-HHGGGS--STTCEEEEE-TTS-HHHHHHHHHH
T ss_pred HhcCCEEEEECCCCCceEEEec-----ccccCCceEEe---CChhhh-cccCCC--CCCeEEEEEeecccHHHHHHHHHH
Confidence 2247789999999888888775 5543 122 233444 344432 23577666544332 256677
Q ss_pred HHhCCCeeEEEEeeeeeeCCCCc--HHHHHHcCCCCEEEEE---ChHHHHHHHHHhcccCCCCceEEEeCH---HHHHHH
Q 022234 196 LSNRGFEVVRLNTYTTEPVHHVD--QTVLKQALSIPVVAVA---SPSAVRSWVNLISDTEQWSNSVACIGE---TTASAA 267 (300)
Q Consensus 196 L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~l~~~d~Ivft---S~s~v~~~~~~~~~~~~~~~~vv~IG~---~Ta~~l 267 (300)
|+++.-++ +..+|.+.+..... +.+.+.....|.+++- .++.-+.+++...+. ..+.+-|.. -..+.+
T Consensus 177 l~~~~~~~-~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~---~~~t~~Ie~~~el~~~~l 252 (281)
T PF02401_consen 177 LKKRFPEL-EGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEH---GKPTYHIETADELDPEWL 252 (281)
T ss_dssp HHHHSTCE-E-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHC---TTCEEEESSGGG--HHHH
T ss_pred HHHhCccc-cCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHh---CCCEEEeCCccccCHhHh
Confidence 77664332 22366665544321 1122223689987763 335556677777764 234444432 222233
Q ss_pred HHcCC-CeEEecCCCCHHHHHHHHHHHHHc
Q 022234 268 KRLGL-KNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 268 ~~~G~-~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
+ |. ++-+.+...+++.+++.+.+++.+
T Consensus 253 ~--~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 253 K--GVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp T--T-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred C--CCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 3 33 344778889999999999998864
No 423
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=34.23 E-value=2.1e+02 Score=27.35 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 208 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 208 (300)
+|.+||++....=..-+.+.++..|.+|+.+.+
T Consensus 79 pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~ 111 (383)
T COG0075 79 PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV 111 (383)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC
Confidence 567777777666566677777777777655544
No 424
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=34.23 E-value=3.7e+02 Score=24.69 Aligned_cols=215 Identities=17% Similarity=0.139 Sum_probs=109.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCC----
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGT---- 125 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~---- 125 (300)
+.+|-...+---+..-.+.|+++|..++.- .+ +..+-+.|||.+=-.-....+.+++.+.
T Consensus 30 ~~~iytlG~iIHN~~vv~~L~~~GV~~v~~----------~~------~v~~~~~ViirAHGv~~~~~~~~~~~g~~viD 93 (298)
T PRK01045 30 GAPIYVRHEIVHNRYVVERLEKKGAIFVEE----------LD------EVPDGAIVIFSAHGVSPAVREEAKERGLTVID 93 (298)
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCEEecC----------cc------cCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEe
Confidence 466777777777888999999999987741 01 0112234555443333444444444432
Q ss_pred ------------------CCceEEEEccchHHHHHHHhhccCCCcccc--ccCCCCcHHHHHHhcccCCCCCCEEEEEcC
Q 022234 126 ------------------PNVRIGVVGAGTASIFEEVIQSSKCSLDVA--FSPSKATGKILASELPKNGKKKCTVLYPAS 185 (300)
Q Consensus 126 ------------------~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~--~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg 185 (300)
++..++.+|..-....+... |+-.. ++ -.+.+++ +.|.. ...+++.++.-
T Consensus 94 aTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~-----g~~~~~~~v--v~~~~e~-~~l~~--~~~~~v~vvsQ 163 (298)
T PRK01045 94 ATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTM-----GQAPGGVYL--VESPEDV-AKLEV--KDPDKLALVTQ 163 (298)
T ss_pred CCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeec-----cCcCCCEEE--EcCHHHH-hhccc--CCCCcEEEEEc
Confidence 24455555555444443332 22110 00 1223333 23321 12355655543
Q ss_pred CC-C---hhHHHHHHHhCCCeeEEEEe--eeeeeCCCCc--HHHHHHcCCCCEEEEEC---hHHHHHHHHHhcccCCCCc
Q 022234 186 AK-A---SNEIEEGLSNRGFEVVRLNT--YTTEPVHHVD--QTVLKQALSIPVVAVAS---PSAVRSWVNLISDTEQWSN 254 (300)
Q Consensus 186 ~~-~---~~~L~~~L~~~G~~v~~~~v--Y~~~~~~~~~--~~~~~~l~~~d~IvftS---~s~v~~~~~~~~~~~~~~~ 254 (300)
-. . -..+.+.|+++. .++.+ +.|.+..... +...+.....|++++-. ++.-+.+++...+.. .
T Consensus 164 TT~~~~~~~~i~~~l~~~~---~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~---~ 237 (298)
T PRK01045 164 TTLSVDDTAEIIAALKERF---PEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAG---A 237 (298)
T ss_pred CCCcHHHHHHHHHHHHHhC---cCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHC---C
Confidence 22 2 224666776653 33444 5555444322 11222235789877642 334455777665532 2
Q ss_pred eEEEeCHHHHHHHHH---cCCCeE-EecCCCCHHHHHHHHHHHHHccC
Q 022234 255 SVACIGETTASAAKR---LGLKNV-YYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 255 ~vv~IG~~Ta~~l~~---~G~~~~-~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
+.+-|. +++.+.. .|...+ +.+...+++.+++.+.+++...+
T Consensus 238 ~t~~Ie--~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~~~ 283 (298)
T PRK01045 238 PAYLID--DASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKELG 283 (298)
T ss_pred CEEEEC--ChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 233332 2233322 345443 67788899999999998887644
No 425
>PLN02494 adenosylhomocysteinase
Probab=34.12 E-value=4.7e+02 Score=25.81 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=28.5
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEe
Q 022234 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (300)
.++||.|.||..+-.-+ +...|.+.|.+.|++|...
T Consensus 40 ~~~pl~G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~ 76 (477)
T PLN02494 40 PSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWC 76 (477)
T ss_pred ccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEE
Confidence 45999999999886654 6678888999999987654
No 426
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.07 E-value=1.9e+02 Score=26.44 Aligned_cols=81 Identities=12% Similarity=0.024 Sum_probs=47.0
Q ss_pred CeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe-ChHHHHHHHHHHHHcC
Q 022234 51 PKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT-SPEAGSVFLEAWKEAG 124 (300)
Q Consensus 51 ~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT-S~~av~~~~~~l~~~~ 124 (300)
++|.+..... ..+.+.+.+++.|+++...-.+... ..|....-..+...+.|.|++. +......|.+++.+.+
T Consensus 145 ~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~G 223 (347)
T cd06340 145 KTVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPAN-ARDLTSEVLKLKAANPDAILPASYTNDAILLVRTMKEQR 223 (347)
T ss_pred ceEEEEecCchHhHHHHHHHHHHHHHcCCEEEEeeccCCC-CcchHHHHHHHHhcCCCEEEEcccchhHHHHHHHHHHcC
Confidence 5666665432 2345566788899988754444322 2233333233344678877775 4455667888888887
Q ss_pred CCCceEEE
Q 022234 125 TPNVRIGV 132 (300)
Q Consensus 125 ~~~~~i~a 132 (300)
++...+..
T Consensus 224 ~~~~~~~~ 231 (347)
T cd06340 224 VEPKAVYS 231 (347)
T ss_pred CCCcEEEe
Confidence 75444433
No 427
>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=34.01 E-value=57 Score=21.73 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=29.3
Q ss_pred eCHHHHHHHHHcCCC----eEEecCCCCHHHHHHHHHHHH
Q 022234 259 IGETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEAL 294 (300)
Q Consensus 259 IG~~Ta~~l~~~G~~----~~~v~~~p~~~~l~~ai~~~~ 294 (300)
..+...+.++.+|++ .+++++.|+..+|+..+..++
T Consensus 12 ~~~~~r~tl~~LgL~k~~~~v~~~~tp~~~Gml~kV~~lV 51 (54)
T cd01658 12 RPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLV 51 (54)
T ss_pred CCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHHhheE
Confidence 356677889999985 468899999999999987654
No 428
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=33.93 E-value=3.7e+02 Score=24.59 Aligned_cols=12 Identities=17% Similarity=0.559 Sum_probs=5.8
Q ss_pred EEEccchHHHHH
Q 022234 131 GVVGAGTASIFE 142 (300)
Q Consensus 131 ~aVG~~Ta~~L~ 142 (300)
++++.++.+.+.
T Consensus 84 I~~t~G~~~~i~ 95 (356)
T PRK04870 84 VLLGNGSDELIQ 95 (356)
T ss_pred EEEcCCHHHHHH
Confidence 345555554443
No 429
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=33.92 E-value=1e+02 Score=28.96 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=39.6
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
|.+|+++-|.= ..+....+..|++++.+|+-. ...|.+.+...+. .+.+.|++++||-
T Consensus 99 gd~vl~~~Ptf--~~Y~~~a~~~g~~~~~v~~~~--~~~d~~~~~~~~~-~~~~lv~i~nPNN 156 (356)
T COG0079 99 GDTVLIPEPTF--SMYEIAAQLAGAEVVKVPLKE--FRLDLDAILAAIR-DKTKLVFLCNPNN 156 (356)
T ss_pred CCEEEEcCCCh--HHHHHHHHhcCCeEEEecccc--cccCHHHHHHhhh-cCCCEEEEeCCCC
Confidence 45788887763 566667777899999999877 2224444443332 3689999998873
No 430
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=33.72 E-value=2.7e+02 Score=22.80 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=8.0
Q ss_pred CCcHHHHHHhcccC
Q 022234 160 KATGKILASELPKN 173 (300)
Q Consensus 160 ~~~~e~L~~~L~~~ 173 (300)
..+.+.+++.|.+.
T Consensus 10 tGnTe~vA~~Ia~~ 23 (167)
T TIGR01752 10 TGNTEGIAEKIQKE 23 (167)
T ss_pred CChHHHHHHHHHHH
Confidence 45566666666543
No 431
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=33.69 E-value=2.7e+02 Score=26.15 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=54.7
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeee----eCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTE----PVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQW 252 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~----~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~ 252 (300)
+.|--|.+... .+.|.+.|+++|+.+..+..+-=. |.+. +. +++-.-..=-..-|.++++..-..-. .
T Consensus 174 GsVAAPTAGLHFt~~ll~~L~~kGv~~a~vTLHVG~GTF~PV~~--ed-i~~H~mH~E~~~I~~~ta~~i~~ak~----~ 246 (342)
T PRK00147 174 GAVAAPTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVRV--ED-IEEHKMHSEWYEVPQETADAINAAKA----R 246 (342)
T ss_pred CceecCCCccCCCHHHHHHHHHCCCcEEEEEEeecCCCCcCccc--Cc-cccCCcccEEEEECHHHHHHHHHHHH----c
Confidence 45666655443 778999999999998887775321 1111 11 11111223345567788887655432 2
Q ss_pred CceEEEeCHHHHHHHHHc
Q 022234 253 SNSVACIGETTASAAKRL 270 (300)
Q Consensus 253 ~~~vv~IG~~Ta~~l~~~ 270 (300)
+-+|+|+|-++.++++..
T Consensus 247 G~rIiAVGTT~vRaLEsa 264 (342)
T PRK00147 247 GGRVIAVGTTSVRTLESA 264 (342)
T ss_pred CCeEEEEcccchhhHHHH
Confidence 569999999999999874
No 432
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=33.59 E-value=1.1e+02 Score=28.52 Aligned_cols=61 Identities=8% Similarity=0.024 Sum_probs=39.5
Q ss_pred CCC-eEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhc---CCccEEEEeChH
Q 022234 49 SNP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLND---TIFDWIIITSPE 111 (300)
Q Consensus 49 ~g~-~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~---~~~d~ivFTS~~ 111 (300)
.|. +|++..|.- ..+...++..|++++.+|+-.-....+.+.+...+.. ...+.|++++++
T Consensus 114 ~g~~~Vlv~~P~y--~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~ 178 (374)
T PRK02610 114 GGEGSILVAEPTF--SMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPN 178 (374)
T ss_pred CCCCeEEEcCCCh--HHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCC
Confidence 453 688888763 4566777888999999886321112345556555432 467888888874
No 433
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=33.57 E-value=1.3e+02 Score=28.72 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=53.2
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCC
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGT 125 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~ 125 (300)
..+.||+|++.-.....-.+++.|.+.|.+++.+-.-. ...+...+.+..-..+..|....+-. .+.+.+++..
T Consensus 270 ~~l~Gkrv~i~gd~~~~~~l~~~L~elGm~~v~~~t~~----~~~~~~~~~~~~l~~~~~v~~~~d~~-~l~~~i~~~~- 343 (407)
T TIGR01279 270 QLLRGKKIFFFGDNLLELPLARFLKRCGMEVVECGTPY----IHRRFHAAELALLEGGVRIVEQPDFH-RQLQRIRATR- 343 (407)
T ss_pred HhcCCCEEEEECCchHHHHHHHHHHHCCCEEEEecCCC----CChHHHHHHHhhcCCCCeEEeCCCHH-HHHHHHHhcC-
Confidence 45889999998877778899999999999886543211 11111122221111244554444333 3334444433
Q ss_pred CCceEEEEccchHHHHHHHhhccCCCccc
Q 022234 126 PNVRIGVVGAGTASIFEEVIQSSKCSLDV 154 (300)
Q Consensus 126 ~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 154 (300)
.-++.-|....--|... |+..
T Consensus 344 --pDllig~~~~~~pl~r~------GfP~ 364 (407)
T TIGR01279 344 --PDLVVTGLGTANPLEAQ------GFTT 364 (407)
T ss_pred --CCEEecCccCCCcHhhC------Ccce
Confidence 33444445555566666 7765
No 434
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=33.18 E-value=3.1e+02 Score=26.22 Aligned_cols=203 Identities=15% Similarity=0.098 Sum_probs=100.0
Q ss_pred CeEEEeCCCC--chHHHHHHHHhCCCCEE-EeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHH-cCCC
Q 022234 51 PKVVVTRERG--KNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKE-AGTP 126 (300)
Q Consensus 51 ~~VlitR~~~--~~~~l~~~L~~~G~~v~-~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~-~~~~ 126 (300)
+.|.+...-+ ...++.+.|++.|+++. .+|-.. ..++. ....-..++-.++..- ...+.+++ .+.+
T Consensus 154 ~~vniiG~~~~~d~~elk~lL~~~Gi~v~~~lpd~~------~~e~~---~~~~~~~~~~~~~~~~-~~A~~Le~~~GiP 223 (407)
T TIGR01279 154 RALVLVGSVNDIVADQLRLELKQLGIPVVGFLPASH------FTELP---VIGPGTVVAPLQPYLS-DTATTLRRERGAK 223 (407)
T ss_pred CcEEEEeccChhhHHHHHHHHHHcCCeEEEEeCCCC------cchhh---hcCCCeEEEEechHHH-HHHHHHHHHhCCc
Confidence 4455554432 34789999999999997 666321 11221 1222334455555544 35555554 2322
Q ss_pred CceE-EEEc-cchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCe
Q 022234 127 NVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFE 202 (300)
Q Consensus 127 ~~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~~ 202 (300)
-..+ +-+| ..|.+.|++.. .+.|..+.-. ......+.+.|... ...|+|+.+..+..-.-.+...|.+.|..
T Consensus 224 ~~~~~~PiGi~~T~~~l~~la--~~~g~~~~~~--~~e~~~~~~~l~~~~~~l~Gkrv~i~gd~~~~~~l~~~L~elGm~ 299 (407)
T TIGR01279 224 VLSAPFPFGPDGTRRFLEAIA--AEFGIEVDKL--SEREAQAWRALEPHTQLLRGKKIFFFGDNLLELPLARFLKRCGME 299 (407)
T ss_pred cccCCCCcCHHHHHHHHHHHH--HHhCcCHHHH--HHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHCCCE
Confidence 1111 2245 34666666551 1114332100 01112333333322 13689999888776677889999999988
Q ss_pred eEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCe
Q 022234 203 VVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 203 v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
+..+.+ ........++..+.+.. +..+...+. ...+.+.+.+. +.-++.-|....-.+.+.|+..
T Consensus 300 ~v~~~t--~~~~~~~~~~~~~~l~~-~~~v~~~~d-~~~l~~~i~~~---~pDllig~~~~~~pl~r~GfP~ 364 (407)
T TIGR01279 300 VVECGT--PYIHRRFHAAELALLEG-GVRIVEQPD-FHRQLQRIRAT---RPDLVVTGLGTANPLEAQGFTT 364 (407)
T ss_pred EEEecC--CCCChHHHHHHHhhcCC-CCeEEeCCC-HHHHHHHHHhc---CCCEEecCccCCCcHhhCCcce
Confidence 733332 11111111222333322 444444433 33333444432 2344444456677778888864
No 435
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=33.10 E-value=1.5e+02 Score=26.24 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=39.0
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccC---CCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~---~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
.+--+|=+-|.+++..|++.+.+.. ..++..++.+..|+..++++|++..
T Consensus 20 ~~gmvvGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS~~t~~~a~~~Gipl~ 72 (228)
T PRK13978 20 NGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKELGIKIC 72 (228)
T ss_pred CCCCEEEeCchHHHHHHHHHHHHHhhccCccEEEEeCcHHHHHHHHHcCCcEe
Confidence 4555788899999999988776532 1246777899999999999999853
No 436
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=33.09 E-value=2.5e+02 Score=24.64 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=85.2
Q ss_pred EEEeChHHHHHHHHHHHHcCCC---CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEE
Q 022234 105 IIITSPEAGSVFLEAWKEAGTP---NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVL 181 (300)
Q Consensus 105 ivFTS~~av~~~~~~l~~~~~~---~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL 181 (300)
++-|...-.+.+.+.+.+.+.. ..+.-.+|..+.++++..+ ...+..-+.+.+..+...... +.+-
T Consensus 21 lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~---------~~~~dp~s~ee~~~e~~~~~~--~~~~ 89 (222)
T KOG2914|consen 21 LVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFV---------KKLPDPVSREEFNKEEEEILD--RLFM 89 (222)
T ss_pred EEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHH---------hhcCCCCCHHHHHHHHHHHHH--Hhcc
Confidence 3445555566666677776632 4556689999999988772 223334455555544433211 1111
Q ss_pred EEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHH----cCCCCEEEEEChHHHHHH-------HHHhcccC
Q 022234 182 YPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSW-------VNLISDTE 250 (300)
Q Consensus 182 ~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~----l~~~d~IvftS~s~v~~~-------~~~~~~~~ 250 (300)
......|...|...|..+|+.+--+ .+.... ..+...+. +..++.+++-+...+++. +...+..+
T Consensus 90 ~~~~~PGa~kLv~~L~~~gip~ala---t~s~~~-~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~ 165 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNGIPVALA---TSSTSA-SFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLG 165 (222)
T ss_pred ccccCCcHHHHHHHHHhCCCCeeEE---ecCCcc-cHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcC
Confidence 1222227788999999999665322 221111 11111111 234555555333333332 22222221
Q ss_pred --C-CCceEEEeCHHHHHHHHHcCCCeEEecC
Q 022234 251 --Q-WSNSVACIGETTASAAKRLGLKNVYYPT 279 (300)
Q Consensus 251 --~-~~~~vv~IG~~Ta~~l~~~G~~~~~v~~ 279 (300)
. ...-|+-=.+..-+++...|++++.+++
T Consensus 166 ~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 166 VPPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred CCCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 1 1233333478888999999999988887
No 437
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=33.09 E-value=1.2e+02 Score=28.64 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=42.0
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHH---HHc--CCCCEE
Q 022234 163 GKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVL---KQA--LSIPVV 231 (300)
Q Consensus 163 ~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~---~~l--~~~d~I 231 (300)
.+.|.+.+.+. ++|+|++.+... -+.+.+.|++.|+++ .+|.-+......+.+. +.. .++|.|
T Consensus 14 l~~l~~~~~~~---g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~---~~~~~v~~~p~~~~v~~~~~~~~~~~~D~I 87 (380)
T cd08185 14 LNELGEEALKP---GKKALIVTGNGSSKKTGYLDRVIELLKQAGVEV---VVFDKVEPNPTTTTVMEGAALAREEGCDFV 87 (380)
T ss_pred HHHHHHHHHhc---CCeEEEEeCCCchhhccHHHHHHHHHHHcCCeE---EEeCCccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 34555555442 479999988654 146778888888664 4554433333332222 222 478987
Q ss_pred E-EEChHHHHH
Q 022234 232 A-VASPSAVRS 241 (300)
Q Consensus 232 v-ftS~s~v~~ 241 (300)
+ +-..+..+.
T Consensus 88 iavGGGS~iD~ 98 (380)
T cd08185 88 VGLGGGSSMDT 98 (380)
T ss_pred EEeCCccHHHH
Confidence 7 666665553
No 438
>PRK13556 azoreductase; Provisional
Probab=32.86 E-value=1.2e+02 Score=25.96 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=18.4
Q ss_pred cCCCCEEEEECh-------HHHHHHHHHhcc
Q 022234 225 ALSIPVVAVASP-------SAVRSWVNLISD 248 (300)
Q Consensus 225 l~~~d~IvftS~-------s~v~~~~~~~~~ 248 (300)
+...|.|||.+| ..++.|++.+-.
T Consensus 87 l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 87 FLEADKVVFAFPLWNFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHCCEEEEeccccccCCcHHHHHHHHHHhc
Confidence 457799999987 678888876553
No 439
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=32.77 E-value=4.2e+02 Score=24.77 Aligned_cols=84 Identities=11% Similarity=0.102 Sum_probs=48.1
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEE
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVV 231 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~I 231 (300)
.+..+++.+ ++... +++.++-.+.. .+.|.+.+++.|.+|.....|... +.....+++.+ .. ++|
T Consensus 124 ~~~a~~~ll-~~~~W-~~vaiiy~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~--~~d~~~~l~~ik~~~-rvi 198 (387)
T cd06386 124 MGETFSALF-ERFHW-RSALLVYEDDKQERNCYFTLEGVHHVFQEEGYHMSIYPFDETK--DLDLDEIIRAIQASE-RVV 198 (387)
T ss_pred HHHHHHHHH-HhCCC-eEEEEEEEcCCCCccceehHHHHHHHHHhcCceEEEEecCCCC--cccHHHHHHHHHhcC-cEE
Confidence 455666655 33322 45554432221 567888899999887654444221 12233344444 24 554
Q ss_pred EE-EChHHHHHHHHHhcccC
Q 022234 232 AV-ASPSAVRSWVNLISDTE 250 (300)
Q Consensus 232 vf-tS~s~v~~~~~~~~~~~ 250 (300)
++ .++..+..|+..+.+.+
T Consensus 199 i~~~~~~~~~~ll~~A~~~g 218 (387)
T cd06386 199 IMCAGADTIRSIMLAAHRRG 218 (387)
T ss_pred EEecCHHHHHHHHHHHHHcC
Confidence 44 48899999998877654
No 440
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.75 E-value=1.4e+02 Score=25.96 Aligned_cols=85 Identities=6% Similarity=-0.026 Sum_probs=48.9
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccE--EEEeChHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDW--IIITSPEAGSVFLEA 119 (300)
Q Consensus 46 ~~l~g~~VlitR~~---~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~--ivFTS~~av~~~~~~ 119 (300)
.++.||++|||... .=...+++.|.+.|++++..- +-.. ..+.+.+.. ..+.... .=+++..+++.+++.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~--r~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTY--LNDK--ARPYVEPLAEELDAPIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEe--CChh--hHHHHHHHHHhhccceEEecCcCCHHHHHHHHHH
Confidence 34679999999865 446799999999999876542 1111 111122211 1111100 113889999999888
Q ss_pred HHHc-CCCCceEEEEc
Q 022234 120 WKEA-GTPNVRIGVVG 134 (300)
Q Consensus 120 l~~~-~~~~~~i~aVG 134 (300)
..+. +.-+.-+.+.|
T Consensus 82 ~~~~~g~ld~lv~nAg 97 (258)
T PRK07533 82 IAEEWGRLDFLLHSIA 97 (258)
T ss_pred HHHHcCCCCEEEEcCc
Confidence 7654 32244444444
No 441
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=32.75 E-value=2.1e+02 Score=27.74 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=76.0
Q ss_pred CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHH---HhhhcCCccEEEEeChHHH--HHHHHHHHHcCC--------C
Q 022234 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNDTIFDWIIITSPEAG--SVFLEAWKEAGT--------P 126 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~---~~l~~~~~d~ivFTS~~av--~~~~~~l~~~~~--------~ 126 (300)
+...++.+.|++.|++++..|... .+.++.. +.++..+.|.||+.-.+-. ..+...++.... +
T Consensus 23 ~~~~~~~~~l~~~~~~vv~~~~~~----~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~~~~~~~~~~~~Pvll~a~~~ 98 (452)
T cd00578 23 EYAREVADLLNELPVEVVDKPEVT----GTPDEARKAAEEFNEANCDGLIVWMHTFGPAKMWIAGLSELRKPVLLLATQF 98 (452)
T ss_pred HHHHHHHHHHhcCCceEEecCccc----CCHHHHHHHHHHHhhcCCcEEEEcccccccHHHHHHHHHhcCCCEEEEeCCC
Confidence 356788889988899999998664 1223333 2333457899887333221 222222333211 1
Q ss_pred C--------ceEEEEc-cchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC--------CCCCCEEEEEcCCCC-
Q 022234 127 N--------VRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--------GKKKCTVLYPASAKA- 188 (300)
Q Consensus 127 ~--------~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~--------~~~~~~vL~~rg~~~- 188 (300)
. ..-...| ..+...|++. |++..++-.....+...+.|.++ ..++.|+..+.+.-.
T Consensus 99 ~~~~~~~~~~~~s~~g~~~~~~~l~r~------gi~~~~v~g~~~d~~~~~~i~~~~raa~~~~~lr~~rig~iG~~~~~ 172 (452)
T cd00578 99 NREIPDFMNLNQSACGLREFGNILARL------GIPFKVVYGHWKDEDVLRKIESWARAAAAVATLRGLRVGRFGDRMRG 172 (452)
T ss_pred CCCCCchhhhhcchhhhHHHHHHHHHc------CCceeEEECCCCCHHHHHHHHHHHHHHHHHHHhhcCceEEECCCcCC
Confidence 0 0112222 3366788888 88765432111113333333221 125689999876532
Q ss_pred ----hhHHHHHHHhCCCeeEEEEeeee
Q 022234 189 ----SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 189 ----~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
..+..+.++.-|+.|..+...+.
T Consensus 173 ~~~~~~d~~~~~~~fG~~v~~i~~~el 199 (452)
T cd00578 173 MAVTEGDKVLAQIKFGVSVEYLEVGEL 199 (452)
T ss_pred cEEecCCHHHHHHhhCeEEEEEcHHHH
Confidence 11333456777999998888755
No 442
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=32.73 E-value=2e+02 Score=25.63 Aligned_cols=124 Identities=10% Similarity=0.069 Sum_probs=59.3
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHH
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRS 241 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~ 241 (300)
+.+.+++.+.... .-++++.+.....+.+.+..++.+.. ..+..+...+ .+++.+-+...|+.+++|....+.
T Consensus 205 ~~~~li~a~~~l~--~~~l~i~G~g~~~~~~~~~~~~~~~~-~~V~~~g~v~----~~~~~~~~~~ad~~i~ps~~~~e~ 277 (357)
T cd03795 205 GLDVLLEAAAALP--DAPLVIVGEGPLEAELEALAAALGLL-DRVRFLGRLD----DEEKAALLAACDVFVFPSVERSEA 277 (357)
T ss_pred CHHHHHHHHHhcc--CcEEEEEeCChhHHHHHHHHHhcCCc-ceEEEcCCCC----HHHHHHHHHhCCEEEeCCcccccc
Confidence 3455665555432 23555554433444555544344321 1122222211 122333345688999988542222
Q ss_pred H----HHHhcccCCCCceEEEeCHH-HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 242 W----VNLISDTEQWSNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 242 ~----~~~~~~~~~~~~~vv~IG~~-Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
| ++.+. .++++++.... ..+.+...|-.- +..+.-+.++++++|.+.+..+
T Consensus 278 ~g~~~~Ea~~----~g~Pvi~~~~~~~~~~i~~~~~~g-~~~~~~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 278 FGIVLLEAMA----FGKPVISTEIGTGGSYVNLHGVTG-LVVPPGDPAALAEAIRRLLEDP 333 (357)
T ss_pred cchHHHHHHH----cCCCEEecCCCCchhHHhhCCCce-EEeCCCCHHHHHHHHHHHHHCH
Confidence 2 22222 25677764322 223333323222 2334458999999999887654
No 443
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=32.70 E-value=2e+02 Score=26.16 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=27.3
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEe
Q 022234 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 47 ~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (300)
+..|++||||...+ -...+++.|.++|.+|+.+
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~ 36 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGI 36 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 46689999998765 4678999999999998764
No 444
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=32.64 E-value=2.9e+02 Score=25.98 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=50.4
Q ss_pred chHHHHHHHHhCCCCEEEeeeeE----eeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccc
Q 022234 61 KNGKLIKALAKHRIDCLELPLIQ----HAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~i~----~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
=.+++.+.|+++|++...+-+=- +.|+. .+.+.+ -....=-+..|..+++.....- + .+.+|+|||-.
T Consensus 185 Ft~~ll~~L~~kGv~~a~vTLHVG~GTF~PV~-~edi~~---H~mH~E~~~I~~~ta~~i~~ak-~---~G~rIiAVGTT 256 (342)
T PRK00147 185 FTEELLEKLKAKGVEIAFVTLHVGAGTFRPVR-VEDIEE---HKMHSEWYEVPQETADAINAAK-A---RGGRVIAVGTT 256 (342)
T ss_pred CCHHHHHHHHHCCCcEEEEEEeecCCCCcCcc-cCcccc---CCcccEEEEECHHHHHHHHHHH-H---cCCeEEEEccc
Confidence 46899999999999987765432 33332 122211 1223444567888888776543 2 35689999999
Q ss_pred hHHHHHHH
Q 022234 137 TASIFEEV 144 (300)
Q Consensus 137 Ta~~L~~~ 144 (300)
+.++|+..
T Consensus 257 ~vRaLEsa 264 (342)
T PRK00147 257 SVRTLESA 264 (342)
T ss_pred chhhHHHH
Confidence 99999986
No 445
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=32.56 E-value=2.5e+02 Score=22.22 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=27.8
Q ss_pred eEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh
Q 022234 52 KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV 96 (300)
Q Consensus 52 ~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~ 96 (300)
|.++.|| ++-...|+++|+.|-.-.++.++-.+.+..+..+
T Consensus 46 RmvV~~~----d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I 86 (142)
T COG4747 46 RMVVDRP----DEAHSVLEEAGFTVRETDVLAVEMEDVPGGLSRI 86 (142)
T ss_pred EEEcCCh----HHHHHHHHHCCcEEEeeeEEEEEecCCCCcHHHH
Confidence 4445554 5567899999999999888887754334444333
No 446
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=32.55 E-value=59 Score=30.96 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=35.2
Q ss_pred CCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcH---HHHHHc--CCCCEEE-EEChHHHH
Q 022234 177 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPVVA-VASPSAVR 240 (300)
Q Consensus 177 ~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~l--~~~d~Iv-ftS~s~v~ 240 (300)
.+|+|++.+.. ..+.+.+.|++.|+.+. +|.-.......+ +..+.+ .++|+|| +-..+..+
T Consensus 21 ~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~---~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD 92 (398)
T cd08178 21 KKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETE---VFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSPMD 92 (398)
T ss_pred CCeEEEEcChhHHhCccHHHHHHHHHHCCCeEE---EecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHH
Confidence 37899988754 23457888998887653 454333232222 222222 4789877 55555444
No 447
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=32.54 E-value=1.9e+02 Score=20.85 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=53.5
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEE---ChHHHHHHHHHhcccCCCCceEEEeC---
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA---SPSAVRSWVNLISDTEQWSNSVACIG--- 260 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivft---S~s~v~~~~~~~~~~~~~~~~vv~IG--- 260 (300)
+..+...|+..|+ ..+.+.. ...+..+.+ ..+|+|+.- .......+++.+.... .+.+++.++
T Consensus 11 ~~~l~~~l~~~~~--~~v~~~~------~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~~ii~~t~~~ 81 (112)
T PF00072_consen 11 RELLEKLLERAGY--EEVTTAS------SGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQIN-PSIPIIVVTDED 81 (112)
T ss_dssp HHHHHHHHHHTTE--EEEEEES------SHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHT-TTSEEEEEESST
T ss_pred HHHHHHHHHhCCC--CEEEEEC------CHHHHHHHhcccCceEEEEEeeecccccccccccccccc-ccccEEEecCCC
Confidence 5667778887774 1122111 122333332 468888865 2223334444444433 467777776
Q ss_pred -HHHHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 022234 261 -ETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 261 -~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~ 291 (300)
+.....+.+.|..- ++....+.+.|.++|+
T Consensus 82 ~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 82 DSDEVQEALRAGADD-YLSKPFSPEELRAAIN 112 (112)
T ss_dssp SHHHHHHHHHTTESE-EEESSSSHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCE-EEECCCCHHHHHHhhC
Confidence 34456666788874 5667679999988874
No 448
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.41 E-value=3.5e+02 Score=24.79 Aligned_cols=148 Identities=21% Similarity=0.118 Sum_probs=79.5
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh----hcCCccEEEEeChHH--H--HHHHHHHHH-cCCCCceEEEEcc
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL----NDTIFDWIIITSPEA--G--SVFLEAWKE-AGTPNVRIGVVGA 135 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l----~~~~~d~ivFTS~~a--v--~~~~~~l~~-~~~~~~~i~aVG~ 135 (300)
-.+..++.|+++..+-+-+. ...+++.+.+ .+...|.|+.--|-- + +..++.+.. ...|++.-.-.|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~---~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~ 129 (288)
T PRK14171 53 KIKNAHKIGIDTLLVNLSTT---IHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGY 129 (288)
T ss_pred HHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhh
Confidence 34566777987765444211 1223344444 357789999887732 1 222222211 1123433332222
Q ss_pred chHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeee
Q 022234 136 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 136 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
|- . |-...+.|- ++.+.++.|..+. ..|++++++ ||.....-|...|.++|+.|+.+.-+.
T Consensus 130 -----l~-~------g~~~~~~Pc--Tp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T-- 193 (288)
T PRK14171 130 -----LH-S------GISQGFIPC--TALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT-- 193 (288)
T ss_pred -----hh-c------CCCCCCcCC--CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--
Confidence 11 2 432234554 5677877776553 367887777 777767778888988998886444322
Q ss_pred eCCCCcHHHHHHcCCCCEEEEEChH
Q 022234 213 PVHHVDQTVLKQALSIPVVAVASPS 237 (300)
Q Consensus 213 ~~~~~~~~~~~~l~~~d~IvftS~s 237 (300)
.. +.+...+.|+|+-.-+.
T Consensus 194 ---~~---L~~~~~~ADIvV~AvGk 212 (288)
T PRK14171 194 ---HN---LSSITSKADIVVAAIGS 212 (288)
T ss_pred ---CC---HHHHHhhCCEEEEccCC
Confidence 11 22223467877766553
No 449
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=32.27 E-value=86 Score=24.18 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=19.3
Q ss_pred CCeEEEeCCCCc------hHHHHHHHHhCCCCEEEeeeeE
Q 022234 50 NPKVVVTRERGK------NGKLIKALAKHRIDCLELPLIQ 83 (300)
Q Consensus 50 g~~VlitR~~~~------~~~l~~~L~~~G~~v~~~P~i~ 83 (300)
-++|+..||... ...+.+..+++|...+++|+..
T Consensus 28 fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~ 67 (110)
T PF04273_consen 28 FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG 67 (110)
T ss_dssp --EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T
T ss_pred CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC
Confidence 467888998742 2357788999999999999965
No 450
>PRK13566 anthranilate synthase; Provisional
Probab=32.10 E-value=2.2e+02 Score=29.63 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=58.3
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe-ChHH-----HHHHHH
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT-SPEA-----GSVFLE 118 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT-S~~a-----v~~~~~ 118 (300)
.+-.|++|++-.-.. -...+.+.|++.|+++..++.-... + .+....+|.||++ ++.. ...+.+
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-----~----~~~~~~~DgVVLsgGpgsp~d~~~~~lI~ 592 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-----E----MLDRVNPDLVVLSPGPGRPSDFDCKATID 592 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-----h----HhhhcCCCEEEECCCCCChhhCCcHHHHH
Confidence 678899999997764 4678999999999998777764311 1 1123478998885 3322 333333
Q ss_pred HHHHcCCCCceEEEEccchHHHHHHHhhccCCCcccc
Q 022234 119 AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 155 (300)
Q Consensus 119 ~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~ 155 (300)
.+.+ .+++|+.|.-.-.-....+ |-++.
T Consensus 593 ~a~~---~~iPILGIClG~QlLa~al------GG~V~ 620 (720)
T PRK13566 593 AALA---RNLPIFGVCLGLQAIVEAF------GGELG 620 (720)
T ss_pred HHHH---CCCcEEEEehhHHHHHHHc------CCEEE
Confidence 3322 3678887777654444444 76654
No 451
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=31.97 E-value=4.9e+02 Score=25.37 Aligned_cols=95 Identities=9% Similarity=0.087 Sum_probs=56.4
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHH-hCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcC
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAG 124 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~-~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~ 124 (300)
.-|.|+||.|.-.....-.++..|. +.|.+++.+- ..... .+.+...+.....+.++....+..+. .+.+.+..
T Consensus 323 ~~L~GkrvaI~~~~~~~~~~~~~l~~ElGmevv~~~-~~~~~---~~~~~~~~~~~~~~~i~i~d~~~~e~-~~~~~~~~ 397 (461)
T TIGR01860 323 ERLQGKKMCIWTGGPRLWHWTKALEDDLGMQVVAMS-SKFGH---QEDFEKVIARGKEGTIYIDDGNELEF-FEVLDLIK 397 (461)
T ss_pred HHcCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe-eecCC---HHHHHHHHHhcCCCeEEEeCCCHHHH-HHHHHhcC
Confidence 3578999998766666667888898 7999987662 11111 23333333333445566777776663 34444433
Q ss_pred CCCceEEEEccchHHHHHHHhhccCCCccc
Q 022234 125 TPNVRIGVVGAGTASIFEEVIQSSKCSLDV 154 (300)
Q Consensus 125 ~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 154 (300)
..++.-|...+...++. |+..
T Consensus 398 ---pDliig~s~~~~~A~kl------giP~ 418 (461)
T TIGR01860 398 ---PDVIFTGPRVGELVKKL------HIPY 418 (461)
T ss_pred ---CCEEEeCCcchhhHhhc------CCCE
Confidence 33555555555666666 7754
No 452
>PRK12744 short chain dehydrogenase; Provisional
Probab=31.91 E-value=3.3e+02 Score=23.45 Aligned_cols=88 Identities=18% Similarity=0.256 Sum_probs=47.5
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeC-CCchhHHHhhh-c-CCccEEE--EeChHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQG-PDTDRLSSVLN-D-TIFDWII--ITSPEAGSVFLEA 119 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~-~~~~~l~~~l~-~-~~~d~iv--FTS~~av~~~~~~ 119 (300)
..+.|++|+||.... =...+++.|.+.|++++.+-. ..... ...+.+.+.+. . .....+- +++..+++.+++.
T Consensus 4 ~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 82 (257)
T PRK12744 4 HSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY-NSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDD 82 (257)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEec-CCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHH
Confidence 457789999998764 347899999999998664421 11111 11111212221 1 1222221 3788888888876
Q ss_pred HHHc-CCCCceEEEEc
Q 022234 120 WKEA-GTPNVRIGVVG 134 (300)
Q Consensus 120 l~~~-~~~~~~i~aVG 134 (300)
..+. +.-+.-+.+.|
T Consensus 83 ~~~~~~~id~li~~ag 98 (257)
T PRK12744 83 AKAAFGRPDIAINTVG 98 (257)
T ss_pred HHHhhCCCCEEEECCc
Confidence 6543 22234444444
No 453
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=31.87 E-value=6.1e+02 Score=27.70 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCh-----------hHHHHHHHhCCCeeEEEEe
Q 022234 176 KKCTVLYPASAKAS-----------NEIEEGLSNRGFEVVRLNT 208 (300)
Q Consensus 176 ~~~~vL~~rg~~~~-----------~~L~~~L~~~G~~v~~~~v 208 (300)
..++||++++...+ -.+...|++.|+.+..+..
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~ 596 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNC 596 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeC
Confidence 45799999876532 2467889999998876653
No 454
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=31.80 E-value=4.3e+02 Score=24.65 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee-----------eeeCCCCcHHHHHHcC--CCCEEEEEChHHHHHH
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT-----------TEPVHHVDQTVLKQAL--SIPVVAVASPSAVRSW 242 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~-----------~~~~~~~~~~~~~~l~--~~d~IvftS~s~v~~~ 242 (300)
+.++||++.+......+...+++.|+.|..+.... ......+.+.+.+... ++|+|+.++....-..
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~~~~~ 90 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEAIATDA 90 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCcCCHHH
Q ss_pred HHHhcccCCCCceEEEeCHHHH----------HHH-HHcCCCeEEecCCCCHHHHHHHHHH
Q 022234 243 VNLISDTEQWSNSVACIGETTA----------SAA-KRLGLKNVYYPTHPGLEGWVDSILE 292 (300)
Q Consensus 243 ~~~~~~~~~~~~~vv~IG~~Ta----------~~l-~~~G~~~~~v~~~p~~~~l~~ai~~ 292 (300)
+..+.+. +.+++ .++.++ +.+ +++|+...-.-.-.+.+++.+.+.+
T Consensus 91 ~~~l~~~---g~~~~-~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~ 147 (395)
T PRK09288 91 LVELEKE---GFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEE 147 (395)
T ss_pred HHHHHhc---CCeeC-CCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHh
No 455
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=31.70 E-value=4e+02 Score=24.23 Aligned_cols=181 Identities=12% Similarity=0.073 Sum_probs=86.6
Q ss_pred cCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH--HhhccCCCccccccC---CCCcHHHHHHhcccC
Q 022234 99 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE--VIQSSKCSLDVAFSP---SKATGKILASELPKN 173 (300)
Q Consensus 99 ~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~--~~~~~~~G~~~~~~p---~~~~~e~L~~~L~~~ 173 (300)
....|.+|+.|....+.+.+.+... ..+.++-.|-.+...... . .-......++. ..-+.+.+++.+...
T Consensus 155 ~~~~d~ii~~s~~~~~~l~~~~~~~--~~v~~ip~g~~~~~~~~~~~~---~~~~~~i~~vgrl~~~K~~~~li~a~~~l 229 (372)
T cd04949 155 LDKVDGVIVATEQQKQDLQKQFGNY--NPIYTIPVGSIDPLKLPAQFK---QRKPHKIITVARLAPEKQLDQLIKAFAKV 229 (372)
T ss_pred hhhCCEEEEccHHHHHHHHHHhCCC--CceEEEcccccChhhcccchh---hcCCCeEEEEEccCcccCHHHHHHHHHHH
Confidence 4678999999998888877654321 122333333332222111 0 00011111111 122344566555543
Q ss_pred C--CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHH--HHHHHHhccc
Q 022234 174 G--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAV--RSWVNLISDT 249 (300)
Q Consensus 174 ~--~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v--~~~~~~~~~~ 249 (300)
. .++-++.+.+.......+.+..+..+..- .+. +.- ... ++.+.+...|+++++|.... -.+++.+.
T Consensus 230 ~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~-~v~-~~g--~~~---~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma-- 300 (372)
T cd04949 230 VKQVPDATLDIYGYGDEEEKLKELIEELGLED-YVF-LKG--YTR---DLDEVYQKAQLSLLTSQSEGFGLSLMEALS-- 300 (372)
T ss_pred HHhCCCcEEEEEEeCchHHHHHHHHHHcCCcc-eEE-EcC--CCC---CHHHHHhhhhEEEecccccccChHHHHHHh--
Confidence 2 13346666555444555655555544321 111 111 111 13333467899999986411 11222222
Q ss_pred CCCCceEEEe--CHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 250 EQWSNSVACI--GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 250 ~~~~~~vv~I--G~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
.++++++. |....+.+.+ |..- ++.+..+.++|+++|.+.+..+
T Consensus 301 --~G~PvI~~~~~~g~~~~v~~-~~~G-~lv~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 301 --HGLPVISYDVNYGPSEIIED-GENG-YLVPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred --CCCCEEEecCCCCcHHHccc-CCCc-eEeCCCcHHHHHHHHHHHHcCH
Confidence 36777774 2122333332 3332 2334468999999999887654
No 456
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=31.63 E-value=2.7e+02 Score=24.90 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=21.4
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEcc
Q 022234 100 TIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 135 (300)
Q Consensus 100 ~~~d~ivFTS~~av~~~~~~l~~~~~---~~~~i~aVG~ 135 (300)
..+|+|+.++-..+....+.+.+.+. +++.+++.+.
T Consensus 237 ~~~~ai~~~~d~~A~g~~~al~~~g~~vP~disv~gfd~ 275 (328)
T PRK11303 237 PMPDALFTTSYTLLQGVLDVLLERPGELPSDLAIATFGD 275 (328)
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 34677777776555556666666553 3555555554
No 457
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=31.55 E-value=48 Score=30.80 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcccCCCCceEEEe---CHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccCC
Q 022234 237 SAVRSWVNLISDTEQWSNSVACI---GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 299 (300)
Q Consensus 237 s~v~~~~~~~~~~~~~~~~vv~I---G~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~~ 299 (300)
++-+.++-++-+.+ .+.-++.+ |.+.++.++++|.+++++...+...-=++.|.+.+.+|.|
T Consensus 79 ~g~E~al~N~lePg-d~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p 143 (385)
T KOG2862|consen 79 SGWEAALVNLLEPG-DNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKP 143 (385)
T ss_pred chHHHHHHhhcCCC-CeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCC
Confidence 34555555544322 24455554 6899999999999999888777776777777777777765
No 458
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=31.46 E-value=3.1e+02 Score=25.26 Aligned_cols=102 Identities=20% Similarity=0.142 Sum_probs=52.0
Q ss_pred CEEEEEcC-CCChhHHHHHHHhC-CCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCce
Q 022234 178 CTVLYPAS-AKASNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNS 255 (300)
Q Consensus 178 ~~vL~~rg-~~~~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~ 255 (300)
-+++++.+ ...++.+.+.+.+. |..+ .++. . . +...+...|+++..|+.+.- +.+. .+++
T Consensus 221 ~~~ii~~~~~~~~~~~~~~~~~~~~~~v---~~~~----~-~---~~~~~~~aDl~v~~sG~~~l---Ea~a----~G~P 282 (380)
T PRK00025 221 LRFVLPLVNPKRREQIEEALAEYAGLEV---TLLD----G-Q---KREAMAAADAALAASGTVTL---ELAL----LKVP 282 (380)
T ss_pred eEEEEecCChhhHHHHHHHHhhcCCCCe---EEEc----c-c---HHHHHHhCCEEEECccHHHH---HHHH----hCCC
Confidence 36777655 33455666666665 5543 2221 1 1 22223467888887765442 2221 2455
Q ss_pred EEEe---CHHHHHHHHH---------------cCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 256 VACI---GETTASAAKR---------------LGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 256 vv~I---G~~Ta~~l~~---------------~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
++++ |+-+-...+. .|.-+.+.-+..+.+.+.+.+.+.+..+
T Consensus 283 vI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~ 342 (380)
T PRK00025 283 MVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADG 342 (380)
T ss_pred EEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCH
Confidence 5544 4444222221 1111222334568889999888877654
No 459
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=31.32 E-value=1.8e+02 Score=27.65 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=49.8
Q ss_pred hHHHHHHH--hCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH-------HHHHHHHhcccCCCCceEEEeC
Q 022234 190 NEIEEGLS--NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-------VRSWVNLISDTEQWSNSVACIG 260 (300)
Q Consensus 190 ~~L~~~L~--~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~-------v~~~~~~~~~~~~~~~~vv~IG 260 (300)
+.+.++++ ..|++| .+|... ....+++...+.+.|+|+|-||.- +..|++.+....+.+.++.++|
T Consensus 266 ~~ia~g~~~~~~g~~v---~~~~~~--~~~~~~i~~~~~~~d~ii~GspT~~~~~~~~~~~~l~~l~~~~~~~K~~a~FG 340 (394)
T PRK11921 266 EAIAEGIKKANKDVTV---KLYNSA--KSDKNDIITEVFKSKAILVGSSTINRGILSSTAAILEEIKGLGFKNKKAAAFG 340 (394)
T ss_pred HHHHHHHhhcCCCCeE---EEEECC--CCCHHHHHHHHHhCCEEEEECCCcCccccHHHHHHHHHhhccCcCCCEEEEEe
Confidence 34455565 455444 444432 222334444455789999999983 4455555544433455666665
Q ss_pred H---------HHHHHHHHcCCCeE----EecCCCCHHH
Q 022234 261 E---------TTASAAKRLGLKNV----YYPTHPGLEG 285 (300)
Q Consensus 261 ~---------~Ta~~l~~~G~~~~----~v~~~p~~~~ 285 (300)
. ...+.+++.|++.+ .+--.|+.++
T Consensus 341 sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~ 378 (394)
T PRK11921 341 SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEA 378 (394)
T ss_pred cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHH
Confidence 3 23455666888642 2334566554
No 460
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=31.29 E-value=2.5e+02 Score=24.03 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=46.7
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEE----EEeChHHHHHHHHHHH
Q 022234 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWI----IITSPEAGSVFLEAWK 121 (300)
Q Consensus 47 ~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~i----vFTS~~av~~~~~~l~ 121 (300)
.+.|++||||..... ...+++.|.++|++++.+- ..+ +..+++.+.+.....+.. =++....++.+++...
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~---r~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIAD---LNQ-DGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVA 79 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEe---CCh-HHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHH
Confidence 366899999988653 4689999999999875321 111 111222222211111221 2356777777766554
Q ss_pred Hc-CCCCceEEEEccc
Q 022234 122 EA-GTPNVRIGVVGAG 136 (300)
Q Consensus 122 ~~-~~~~~~i~aVG~~ 136 (300)
+. +..+.-|.+.|..
T Consensus 80 ~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 80 ERFGSVDILVSNAGIQ 95 (262)
T ss_pred HHcCCCCEEEECCccC
Confidence 32 3235556666643
No 461
>PRK09004 FMN-binding protein MioC; Provisional
Probab=31.18 E-value=1.4e+02 Score=24.13 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=33.4
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH--------HHHHHHHHHHHc--CCCCceEE
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE--------AGSVFLEAWKEA--GTPNVRIG 131 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~--------av~~~~~~l~~~--~~~~~~i~ 131 (300)
+..+++.+++.|+++..+.+. +.+ ++..+|.+||-++. ..+.|.+.+.+. .+.+++++
T Consensus 19 A~~l~~~~~~~g~~~~~~~~~------~~~------~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g~~~a 86 (146)
T PRK09004 19 ADHLAEKLEEAGFSTETLHGP------LLD------DLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQVRFA 86 (146)
T ss_pred HHHHHHHHHHcCCceEEeccC------CHH------HhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCCCEEE
Confidence 344556667788887754331 112 13345655554432 356677766554 24466666
Q ss_pred EEcc
Q 022234 132 VVGA 135 (300)
Q Consensus 132 aVG~ 135 (300)
+.|-
T Consensus 87 VfGl 90 (146)
T PRK09004 87 AIGI 90 (146)
T ss_pred EEee
Confidence 6553
No 462
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=31.14 E-value=4e+02 Score=25.67 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=47.3
Q ss_pred CeEEEeCCCCchHHHHHHHHhCC--CCEEEeeeeE-------e--eeC--CCchhHHHhhhcCCccEEEEeChH-HHHHH
Q 022234 51 PKVVVTRERGKNGKLIKALAKHR--IDCLELPLIQ-------H--AQG--PDTDRLSSVLNDTIFDWIIITSPE-AGSVF 116 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G--~~v~~~P~i~-------~--~~~--~~~~~l~~~l~~~~~d~ivFTS~~-av~~~ 116 (300)
|+||+.....+...++.+|.+.+ ..++..|--- . ... .|.+.+.+..+...+|+||...-. .+..+
T Consensus 5 ~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~~iD~Vv~g~E~~l~~gl 84 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNPFDLIVVGPEDPLVAGF 84 (426)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHcCCCEEEECCchHHHHHH
Confidence 89999999999999999999887 4556666311 1 111 244455554455679999865333 23445
Q ss_pred HHHHHHcC
Q 022234 117 LEAWKEAG 124 (300)
Q Consensus 117 ~~~l~~~~ 124 (300)
.+.+.+.+
T Consensus 85 ad~~~~~G 92 (426)
T PRK13789 85 ADWAAELG 92 (426)
T ss_pred HHHHHHcC
Confidence 56555554
No 463
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=31.09 E-value=3.4e+02 Score=23.20 Aligned_cols=122 Identities=18% Similarity=0.198 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCc--HHHH---HHhcccCCCCCCEEEEEc
Q 022234 110 PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKAT--GKIL---ASELPKNGKKKCTVLYPA 184 (300)
Q Consensus 110 ~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L---~~~L~~~~~~~~~vL~~r 184 (300)
+..+..+.+.+.+. +.++++-|. |++.|++. |+++..+- +.+ .|-| ++.|.... -+-+|--|
T Consensus 10 K~~l~~lAk~L~~l---Gf~I~AT~G-TAk~L~e~------GI~v~~V~-k~TgfpE~l~GRVKTLHP~i--hggiL~~~ 76 (187)
T cd01421 10 KTGLVEFAKELVEL---GVEILSTGG-TAKFLKEA------GIPVTDVS-DITGFPEILGGRVKTLHPKI--HGGILARR 76 (187)
T ss_pred cccHHHHHHHHHHC---CCEEEEccH-HHHHHHHc------CCeEEEhh-hccCCcHhhCCccccCChhh--hhhhhcCC
Confidence 45555666666664 568888764 99999999 99876542 222 1111 11111100 01122212
Q ss_pred CCCChhHHHHHHHhCCCeeEE---EEeeeeee---C-CCCcHHHHHHc------------C-CCCEEEEEChHHHHHHHH
Q 022234 185 SAKASNEIEEGLSNRGFEVVR---LNTYTTEP---V-HHVDQTVLKQA------------L-SIPVVAVASPSAVRSWVN 244 (300)
Q Consensus 185 g~~~~~~L~~~L~~~G~~v~~---~~vY~~~~---~-~~~~~~~~~~l------------~-~~d~IvftS~s~v~~~~~ 244 (300)
.+ .+.+ .|+++|+.... +..|--+. . ....+++++.+ + --++.+.++|+..+.+++
T Consensus 77 ~~--~~~~--~~~~~~i~~idlVvvNlYpF~~~~~~~~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~vv~dp~dY~~v~~ 152 (187)
T cd01421 77 DN--EEHK--DLEEHGIEPIDLVVVNLYPFEETVAKGNVTLEEAIENIDIGGPSLLRAAAKNYKDVTVLVDPADYQKVLE 152 (187)
T ss_pred CC--hhHH--HHHHcCCCCeeEEEEcccChHHHhccCCCCHHHHHHhccCCcHHHHHHHHhcCCCeEEEcCHHHHHHHHH
Confidence 21 1222 57777765444 44453221 1 11123333332 2 246899999999999988
Q ss_pred Hhcc
Q 022234 245 LISD 248 (300)
Q Consensus 245 ~~~~ 248 (300)
.++.
T Consensus 153 ~l~~ 156 (187)
T cd01421 153 ELKS 156 (187)
T ss_pred HHHh
Confidence 8865
No 464
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=31.02 E-value=2.1e+02 Score=25.70 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=37.5
Q ss_pred cCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeC-HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 225 ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIG-ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG-~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
+...|+.+++|.. +.|---+-+.-..++++++.. +...+.+.. +. .++....+.+++.++|.+.+..++
T Consensus 264 ~~~adi~v~ps~~--E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~-~~--~~~~~~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 264 LQAMDVFLFPSLY--EGLPLVLIEAQASGLPCILSDTITKEVDLTD-LV--KFLSLDESPEIWAEEILKLKSEDR 333 (358)
T ss_pred HHhcCEEEecccc--cCCCHHHHHHHHhCCCEEEEcCCchhhhhcc-Cc--cEEeCCCCHHHHHHHHHHHHhCcc
Confidence 4567888888742 222100000001256766642 223334444 33 244555578999999999887765
No 465
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=30.70 E-value=3.2e+02 Score=24.30 Aligned_cols=80 Identities=13% Similarity=0.026 Sum_probs=36.8
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCch-hHHHhhhcCCccEEEEeC-hHHHHHHHHHHH
Q 022234 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNDTIFDWIIITS-PEAGSVFLEAWK 121 (300)
Q Consensus 49 ~g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~-~l~~~l~~~~~d~ivFTS-~~av~~~~~~l~ 121 (300)
..++|.+..... ....+.+.+++.|+++.....+.... .+.. .+.+. .....|.|++.+ ......+.+.++
T Consensus 132 g~~~vail~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~-~d~~~~~~~l-~~~~pdaIi~~~~~~~~~~~~~~l~ 209 (312)
T cd06333 132 GVKTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTD-TSVTAQLLKI-RAARPDAVLIWGSGTPAALPAKNLR 209 (312)
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEeeCCCC-cCHHHHHHHH-HhCCCCEEEEecCCcHHHHHHHHHH
Confidence 345665554332 12345566677777764432222111 1211 11111 123467777765 333444666666
Q ss_pred HcCCCCceEE
Q 022234 122 EAGTPNVRIG 131 (300)
Q Consensus 122 ~~~~~~~~i~ 131 (300)
+.+.+ .+++
T Consensus 210 ~~g~~-~p~~ 218 (312)
T cd06333 210 ERGYK-GPIY 218 (312)
T ss_pred HcCCC-CCEE
Confidence 66543 3444
No 466
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=30.63 E-value=2.1e+02 Score=28.17 Aligned_cols=87 Identities=11% Similarity=0.001 Sum_probs=48.0
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCC-----CChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEE-EE
Q 022234 162 TGKILASELPKNGKKKCTVLYPASA-----KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVV-AV 233 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~-----~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~I-vf 233 (300)
.+..+++.+.... -++|.++..+ .....+.+.+++.|+.+.....+.......+....+..+ .+.|+| ++
T Consensus 174 q~~Ai~~l~~~f~--wk~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~vVvl~ 251 (510)
T cd06364 174 QATAMADIIEYFR--WNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKVIVVF 251 (510)
T ss_pred HHHHHHHHHHHcC--CeEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566776554332 2466555332 245678888999998876655543321111111223223 356765 44
Q ss_pred EChHHHHHHHHHhcccC
Q 022234 234 ASPSAVRSWVNLISDTE 250 (300)
Q Consensus 234 tS~s~v~~~~~~~~~~~ 250 (300)
.+...+..++..+.+.+
T Consensus 252 ~~~~~~~~ll~qa~~~g 268 (510)
T cd06364 252 SSGPDLEPLIKEIVRRN 268 (510)
T ss_pred eCcHHHHHHHHHHHHhC
Confidence 66677777777766554
No 467
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=30.60 E-value=3.5e+02 Score=24.78 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=27.8
Q ss_pred cEEEEeChHHHHHHHHHHHHcCCCCceEEEEccch----HHHHHHHhhccCCCccccccCCC
Q 022234 103 DWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSPSK 160 (300)
Q Consensus 103 d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~T----a~~L~~~~~~~~~G~~~~~~p~~ 160 (300)
..|..||.|.-..+.......+.+ +.++ +...+ .+.++.+ |-++..++..
T Consensus 53 ~vv~aSsGN~g~alA~~a~~~G~~-~~iv-~p~~~~~~k~~~l~~~------GA~v~~~~~~ 106 (316)
T cd06448 53 HVVCSSGGNAGLAAAYAARKLGVP-CTIV-VPESTKPRVVEKLRDE------GATVVVHGKV 106 (316)
T ss_pred eEEEeCCcHHHHHHHHHHHHcCCC-EEEE-ECCCCCHHHHHHHHHc------CCEEEEECCc
Confidence 466677778777777666655542 2222 22222 4455555 7777666543
No 468
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=30.56 E-value=1.5e+02 Score=27.96 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=40.8
Q ss_pred HHHHHhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcH---HHHHHc--CCCCEEE-
Q 022234 164 KILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPVVA- 232 (300)
Q Consensus 164 e~L~~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~l--~~~d~Iv- 232 (300)
+.+.+.+.+. .++|+|++.+... .+.+.+.|++.|+++ .+|.........+ +..+.+ .++|.||
T Consensus 12 ~~l~~~~~~~--~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~---~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 86 (375)
T cd08194 12 DETGAVLADL--GGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIES---AIFDDVVSEPTDESVEEGVKLAKEGGCDVIIA 86 (375)
T ss_pred HHHHHHHHHc--CCCeEEEEcCcchhhcchHHHHHHHHHHCCCeE---EEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 4444444433 2468888887643 345778898888765 3454332222222 222222 4788776
Q ss_pred EEChHHHHH
Q 022234 233 VASPSAVRS 241 (300)
Q Consensus 233 ftS~s~v~~ 241 (300)
+-..+..+.
T Consensus 87 iGGGS~~D~ 95 (375)
T cd08194 87 LGGGSPIDT 95 (375)
T ss_pred eCCchHHHH
Confidence 666666653
No 469
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=30.46 E-value=2.4e+02 Score=26.53 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=45.7
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeee----eCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTE----PVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQW 252 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~----~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~ 252 (300)
+.|--|.+... .+.|.+.|+++|+.+..+...-=. |... ++ +++-.-..=-..-+..+++.+-+.-. .
T Consensus 174 GSvAAPTAGLHFt~~ll~~l~~kGv~~a~vTLHVG~GTF~pV~~--e~-i~~H~mh~E~~~I~~~ta~~i~~ak~----~ 246 (341)
T PF02547_consen 174 GSVAAPTAGLHFTEELLERLKAKGVEIAFVTLHVGLGTFRPVRV--ED-IEEHKMHSEYYEIPEETAEAINKAKA----E 246 (341)
T ss_dssp ------SGGGG--HHHHHHHHHHTEEEEEEEEEECGGGG------------------EEEEE-HHHHHHHHHHHH----T
T ss_pred CeEeCCCCCCCCCHHHHHHHHHCCCeEEEEEEEeccCcccccCc--Cc-ccCCCCcceEEEECHHHHHHHHHHHH----h
Confidence 45666655443 778999999999888777765321 1111 11 11111123345567788887755432 3
Q ss_pred CceEEEeCHHHHHHHHHc
Q 022234 253 SNSVACIGETTASAAKRL 270 (300)
Q Consensus 253 ~~~vv~IG~~Ta~~l~~~ 270 (300)
+-+|+|+|-++.++|+..
T Consensus 247 G~RViAVGTT~vRaLEsa 264 (341)
T PF02547_consen 247 GGRVIAVGTTVVRALESA 264 (341)
T ss_dssp T--EEEESHHHHHHHHHH
T ss_pred CCcEEEEccHHHHHHhhh
Confidence 569999999999999985
No 470
>PRK09271 flavodoxin; Provisional
Probab=30.36 E-value=2.3e+02 Score=23.01 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=28.8
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEECh--------HHHHHHHHHhcc
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP--------SAVRSWVNLISD 248 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~--------s~v~~~~~~~~~ 248 (300)
..+.+.|+..|+.+ .+|........ .....+.+.|.|+|.|| ..+..|++.+..
T Consensus 19 ~~ia~~l~~~g~~v---~~~~~~~~~~~--~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~ 80 (160)
T PRK09271 19 REIEERCEEAGHEV---DWVETDVQTLA--EYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAE 80 (160)
T ss_pred HHHHHHHHhCCCee---EEEeccccccc--ccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHH
Confidence 35566777777654 34443221111 01111346788888884 357777766654
No 471
>PLN02461 Probable pyruvate kinase
Probab=30.30 E-value=2.1e+02 Score=28.54 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=43.6
Q ss_pred CCC-EEEEE-ChHHHHHHHHHhcccCCCCceEEEeC---------------HHHHHHHHHc-CCCeEEecC------CCC
Q 022234 227 SIP-VVAVA-SPSAVRSWVNLISDTEQWSNSVACIG---------------ETTASAAKRL-GLKNVYYPT------HPG 282 (300)
Q Consensus 227 ~~d-~Ivft-S~s~v~~~~~~~~~~~~~~~~vv~IG---------------~~Ta~~l~~~-G~~~~~v~~------~p~ 282 (300)
+.. +|+|| |+.+++.+..+- ...+++++- +.|++.+.=+ |+.+++... ..+
T Consensus 395 ~a~aIiv~T~sG~tA~~iSk~R-----P~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~ 469 (511)
T PLN02461 395 KASLIVVLTRGGTTARLVAKYR-----PAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSES 469 (511)
T ss_pred CCCEEEEECCCcHHHHHHHhhC-----CCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCC
Confidence 443 56676 667777665542 256777774 6788877664 888765443 347
Q ss_pred HHHHHHHHHHHHHcc
Q 022234 283 LEGWVDSILEALREH 297 (300)
Q Consensus 283 ~~~l~~ai~~~~~~~ 297 (300)
.+.+++...++..+.
T Consensus 470 ~~~~i~~a~~~~~~~ 484 (511)
T PLN02461 470 TEEILEAAIEHAKKK 484 (511)
T ss_pred HHHHHHHHHHHHHHc
Confidence 788888888777654
No 472
>PRK12827 short chain dehydrogenase; Provisional
Probab=30.26 E-value=3.2e+02 Score=23.09 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=47.3
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhc--CCccEE--EEeChHHHHHHHHHHHH
Q 022234 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLND--TIFDWI--IITSPEAGSVFLEAWKE 122 (300)
Q Consensus 48 l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~--~~~d~i--vFTS~~av~~~~~~l~~ 122 (300)
+.+++|+||.... =...+++.|.++|++++.+-...........++...+.. ..+.++ =++...+++..++.+.+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5689999998764 346889999999998765432211111111112111211 122222 13667777777765544
Q ss_pred c-CCCCceEEEEcc
Q 022234 123 A-GTPNVRIGVVGA 135 (300)
Q Consensus 123 ~-~~~~~~i~aVG~ 135 (300)
. +.-+.-|.+.|.
T Consensus 84 ~~~~~d~vi~~ag~ 97 (249)
T PRK12827 84 EFGRLDILVNNAGI 97 (249)
T ss_pred HhCCCCEEEECCCC
Confidence 3 223455555554
No 473
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=30.18 E-value=3.7e+02 Score=23.44 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeeeeCCC----CcH---HHHHHcCCCCEEEEECh----
Q 022234 176 KKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHH----VDQ---TVLKQALSIPVVAVASP---- 236 (300)
Q Consensus 176 ~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~----~~~---~~~~~l~~~d~IvftS~---- 236 (300)
.--+|+.+.|... ...+.+.+.+.|++++.+.+ ...+... ..+ .+.+.+...|+++|.||
T Consensus 25 ~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl-~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn~ 103 (219)
T TIGR02690 25 HIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDP-PGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERHG 103 (219)
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCc-ccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcccc
Confidence 3458888888653 23455566667888766652 2222111 111 12233457899999998
Q ss_pred ---HHHHHHHHHhccc
Q 022234 237 ---SAVRSWVNLISDT 249 (300)
Q Consensus 237 ---s~v~~~~~~~~~~ 249 (300)
..++++++.+...
T Consensus 104 sipg~LKNaiDwls~~ 119 (219)
T TIGR02690 104 AITGSQKDQIDWIPLS 119 (219)
T ss_pred CcCHHHHHHHHhcccC
Confidence 5778888877653
No 474
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=30.05 E-value=2.1e+02 Score=22.40 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchh-HHHhhhcCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEccc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDR-LSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 136 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~-l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 136 (300)
..+...++++|..+............+... ....++....|+|+..+...+..+...+.+.+. +++.+++.|..
T Consensus 29 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~~~~~~a~~~~~~l~~~g~~vP~di~vv~~~~~ 106 (160)
T PF13377_consen 29 EGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIICSNDRLALGVLRALRELGIRVPQDISVVSFDDS 106 (160)
T ss_dssp HHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEESSHHHHHHHHHHHHHTTSCTTTTSEEEEESSS
T ss_pred HHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEEcCHHHHHHHHHHHHHcCCcccccccEEEecCc
Confidence 346678888998865544433222111111 111222126799999999999999999999876 58999999864
No 475
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=29.99 E-value=1.5e+02 Score=23.39 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=21.2
Q ss_pred cCCccEEEEeChH--------HHHHHHHHHHHcCCCCceEEEEcc
Q 022234 99 DTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 99 ~~~~d~ivFTS~~--------av~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
..+||.|+|-|+. .+..|++.+.. .+.+++++|-
T Consensus 48 ~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~---~~k~~avfgt 89 (140)
T TIGR01754 48 PENYDLVFLGTWTWERGRTPDEMKDFIAELGY---KPSNVAIFGT 89 (140)
T ss_pred hhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc---cCCEEEEEEc
Confidence 3468999998863 45666655433 3556666663
No 476
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=29.94 E-value=1.7e+02 Score=25.61 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=40.5
Q ss_pred cCCCCEEEEEChHHHHHHHHHhcccCC--CCceEEEeCHHHHHHHHHcCCCe
Q 022234 225 ALSIPVVAVASPSAVRSWVNLISDTEQ--WSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~~~~~~~~~--~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
+.+-+.|.+-|++++..+.+.+.+... .++.+++-+..++..+++.|++.
T Consensus 18 I~dg~~IgLgsGST~~~l~~~L~~~~~~~~~itvVt~S~~~a~~l~~~gi~v 69 (220)
T PRK00702 18 VEDGMIVGLGTGSTAAYFIDALGERVKEGLIIGGVPTSEASTELAKELGIPL 69 (220)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhhhccCCCEEEECCcHHHHHHHHhCCCeE
Confidence 356789999999999999998865311 15788899999999999889875
No 477
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=29.87 E-value=68 Score=29.38 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=28.1
Q ss_pred CCCCCCeEEEeCC---CCchHHHHHHHHhCCCCEEE
Q 022234 46 ASNSNPKVVVTRE---RGKNGKLIKALAKHRIDCLE 78 (300)
Q Consensus 46 ~~l~g~~VlitR~---~~~~~~l~~~L~~~G~~v~~ 78 (300)
.+|.||++|||.. .+=...+++.|.+.|++|+.
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 3488999999988 44567999999999999876
No 478
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=29.84 E-value=2.2e+02 Score=26.05 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=25.3
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCCEEEe
Q 022234 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 49 ~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (300)
.||+||||...+ -...+++.|.+.|.+|+.+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~ 34 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGY 34 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCEEEEE
Confidence 579999998765 4578999999999998754
No 479
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=29.82 E-value=3.6e+02 Score=24.25 Aligned_cols=82 Identities=7% Similarity=-0.065 Sum_probs=46.6
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC-hHHHHHHHHHHHHc
Q 022234 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS-PEAGSVFLEAWKEA 123 (300)
Q Consensus 50 g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS-~~av~~~~~~l~~~ 123 (300)
.++|.+..... -...+.+.+++.|++++....+... ..|....-..+...+.|.|++.+ ...+..|+..+.+.
T Consensus 135 ~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~ 213 (334)
T cd06327 135 GKKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPLG-TSDFSSYLLQAQASGADVLVLANAGADTVNAIKQAAEF 213 (334)
T ss_pred CCeEEEEecchHHhHHHHHHHHHHHHhcCCEEcCcccCCCC-CccHHHHHHHHHhCCCCEEEEeccchhHHHHHHHHHHh
Confidence 67777776543 2345667777889887654444332 22433322223345678777764 34455566777777
Q ss_pred CCC-CceEEE
Q 022234 124 GTP-NVRIGV 132 (300)
Q Consensus 124 ~~~-~~~i~a 132 (300)
+.. ..+++.
T Consensus 214 g~~~~~~~~~ 223 (334)
T cd06327 214 GLTKGQKLAG 223 (334)
T ss_pred CCccCCcEEE
Confidence 664 445544
No 480
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=29.77 E-value=99 Score=25.53 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=32.1
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-h---cCCccEEEEeChHHH
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-N---DTIFDWIIITSPEAG 113 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~---~~~~d~ivFTS~~av 113 (300)
...++..|++.|+++..... .+ +|.+.+.+.+ + ...+|.|+.|-..++
T Consensus 24 ~~~l~~~L~~~G~~v~~~~i---v~-Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 24 GQYLVERLTEAGHRLADRAI---VK-DDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred HHHHHHHHHHCCCeEEEEEE---cC-CCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 45788889999998765444 22 3445565555 2 357999998876654
No 481
>PRK09620 hypothetical protein; Provisional
Probab=29.75 E-value=85 Score=27.56 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=25.1
Q ss_pred CCCCeEEEeCCC----------------C-chHHHHHHHHhCCCCEEEee
Q 022234 48 NSNPKVVVTRER----------------G-KNGKLIKALAKHRIDCLELP 80 (300)
Q Consensus 48 l~g~~VlitR~~----------------~-~~~~l~~~L~~~G~~v~~~P 80 (300)
|.|++||||-.. + -...+++.|.++|++|..+-
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~ 50 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLH 50 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEe
Confidence 469999999443 1 25689999999999987653
No 482
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=29.74 E-value=1.5e+02 Score=27.72 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=39.5
Q ss_pred HHHHHhcccCCCCCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHH---HHHHc--CCCCEEE-
Q 022234 164 KILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT---VLKQA--LSIPVVA- 232 (300)
Q Consensus 164 e~L~~~L~~~~~~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~---~~~~l--~~~d~Iv- 232 (300)
+.|.+.+.+. +.++++++.+.. ..+.+.+.|++.|+.+. +|.........+. ..+.. .+.|+||
T Consensus 13 ~~l~~~l~~~--g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~---~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIa 87 (370)
T cd08192 13 KELPAECAEL--GIKRPLIVTDPGLAALGLVARVLALLEDAGLAAA---LFDEVPPNPTEAAVEAGLAAYRAGGCDGVIA 87 (370)
T ss_pred HHHHHHHHHc--CCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEE---EeCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3444444443 236888888754 24567888988887653 3443322222222 22222 4788877
Q ss_pred EEChHHHH
Q 022234 233 VASPSAVR 240 (300)
Q Consensus 233 ftS~s~v~ 240 (300)
+-..+..+
T Consensus 88 iGGGSviD 95 (370)
T cd08192 88 FGGGSALD 95 (370)
T ss_pred eCCchHHH
Confidence 65555554
No 483
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=29.66 E-value=1.3e+02 Score=21.92 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=29.9
Q ss_pred CCCcHHHHHHhcccCCCCCCEEEEEcCCCC--hhHHHHHHHhCC
Q 022234 159 SKATGKILASELPKNGKKKCTVLYPASAKA--SNEIEEGLSNRG 200 (300)
Q Consensus 159 ~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~--~~~L~~~L~~~G 200 (300)
..++-+.|.+.+.+......|+ +.|+..+ .+.|.+.|.++|
T Consensus 18 ~~~t~~~L~~ai~~~FG~~arF-hTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 18 NPYTKEELKAAIIEKFGEDARF-HTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred CCcCHHHHHHHHHHHhCCCceE-EecCCCCCCHHHHHHHHHHcC
Confidence 3456778887777766555565 8888775 678888898887
No 484
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=29.64 E-value=3.6e+02 Score=23.05 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=14.8
Q ss_pred CccEEEEeCh-HHHHHHHHHHHHcCCCCceEEE
Q 022234 101 IFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGV 132 (300)
Q Consensus 101 ~~d~ivFTS~-~av~~~~~~l~~~~~~~~~i~a 132 (300)
..|.|++.+. .....+.+.+.+.+. +.+++.
T Consensus 190 ~~~~vi~~~~~~~~~~~~~~~~~~g~-~~~~~~ 221 (298)
T cd06268 190 GPDAVFLAGYGGDAALFLKQAREAGL-KVPIVG 221 (298)
T ss_pred CCCEEEEccccchHHHHHHHHHHcCC-CCcEEe
Confidence 4455555543 344445555555444 344443
No 485
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=29.64 E-value=1.3e+02 Score=28.33 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=29.3
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeee
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPL 81 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~ 81 (300)
..+.|+++++.......-.++..|.+.|.++..+-.
T Consensus 275 ~~l~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~ 310 (399)
T cd00316 275 EYLGGKKVAIFGDGDLLLALARFLLELGMEVVAAGT 310 (399)
T ss_pred HHhcCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEe
Confidence 457899999988777777889999999998877644
No 486
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=29.61 E-value=83 Score=26.86 Aligned_cols=27 Identities=11% Similarity=0.375 Sum_probs=20.5
Q ss_pred HHHHHHcCCCCEEEEECh-------HHHHHHHHH
Q 022234 219 QTVLKQALSIPVVAVASP-------SAVRSWVNL 245 (300)
Q Consensus 219 ~~~~~~l~~~d~IvftS~-------s~v~~~~~~ 245 (300)
+++.+.+...|+|||.|| +..++|++.
T Consensus 67 ~~i~~~l~~aD~iI~gsPvy~g~vsa~~K~fiDR 100 (207)
T COG0655 67 NEIYEKLLEADGIIFGSPVYFGNVSAQMKAFIDR 100 (207)
T ss_pred HHHHHHHHHCCEEEEeCCeecCCchHHHHHHHhh
Confidence 344555667899999997 678888887
No 487
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=29.57 E-value=3.8e+02 Score=23.28 Aligned_cols=188 Identities=15% Similarity=0.158 Sum_probs=104.6
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeE---------------eeeC-CCchhHHHhhhcCCccEEEEeChHHH-
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ---------------HAQG-PDTDRLSSVLNDTIFDWIIITSPEAG- 113 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~---------------~~~~-~~~~~l~~~l~~~~~d~ivFTS~~av- 113 (300)
|+|+|-.-..-...+++.|.+.|.+++.+---+ +..- .+.+.|.+ ....++|.++..+.+-.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~-agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEE-AGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHh-cCCCcCCEEEEeeCCCHH
Confidence 456666655556778888888887776543211 1110 12222222 13578999999888844
Q ss_pred HHHHHHHHH--cCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCC------C--CCEEEEE
Q 022234 114 SVFLEAWKE--AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK------K--KCTVLYP 183 (300)
Q Consensus 114 ~~~~~~l~~--~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~------~--~~~vL~~ 183 (300)
....-.+.. .+.+.+-.=+-.+.-.+.+++. |+...+.|+...+..+...+..... . ...++..
T Consensus 80 N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~------g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~~~~~~~~~~~~~ 153 (225)
T COG0569 80 NSVLALLALKEFGVPRVIARARNPEHEKVLEKL------GADVIISPEKLAAKRLARLIVTPGALDVLELAGGDAEVIEE 153 (225)
T ss_pred HHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHc------CCcEEECHHHHHHHHHHHHhcCCChheEEeecCCcceEEEE
Confidence 444433332 3444555555666677888888 9877778887777777776643220 1 1222222
Q ss_pred cC----CCChhHHHHHHHhCCCeeEEEEeeeee--eCCCCcHHHHHHcCCCC-EEEEEChHHHHHHHHHhcc
Q 022234 184 AS----AKASNEIEEGLSNRGFEVVRLNTYTTE--PVHHVDQTVLKQALSIP-VVAVASPSAVRSWVNLISD 248 (300)
Q Consensus 184 rg----~~~~~~L~~~L~~~G~~v~~~~vY~~~--~~~~~~~~~~~~l~~~d-~IvftS~s~v~~~~~~~~~ 248 (300)
.- ......|.+.=-.....+..+.+|+.. ......+.. +..-| .+++.++..++.|.+.+..
T Consensus 154 ~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~~~~~~~p~g~~~---l~~gD~l~v~~~~~~i~~~~~~~~~ 222 (225)
T COG0569 154 KVAEDSPLAGKTLRELDLRLPYDVNVIAIKRGGNELIIPRGDTT---LEAGDRLIVIGAPEALREVEELLGG 222 (225)
T ss_pred EecCCCccCCcCHHHhcccCCCCcEEEEEecCCCceecCCCCCE---ecCCCEEEEEEcHHHHHHHHHHhcc
Confidence 11 222334443211123556778888874 222222211 23334 6788888999988887653
No 488
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=29.57 E-value=1.6e+02 Score=27.18 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=35.7
Q ss_pred CceEEEeCHHHHHHHHHcCCCeEEecCC----CCHHHHHHHHHHHHHccCC
Q 022234 253 SNSVACIGETTASAAKRLGLKNVYYPTH----PGLEGWVDSILEALREHGH 299 (300)
Q Consensus 253 ~~~vv~IG~~Ta~~l~~~G~~~~~v~~~----p~~~~l~~ai~~~~~~~~~ 299 (300)
++.++++|+..++.+..+|...+++.+. +..+...+++.+.+++.+|
T Consensus 30 ~v~~vv~g~~~~~~l~~~Gad~V~~~~~~~~~~~~e~~~~al~~~i~~~~P 80 (312)
T PRK11916 30 QVYAIVQNTDQAQAVMPYGPKCIYVLEQNDALQRTENYAESIAALLKDKHP 80 (312)
T ss_pred cEEEEEEChhHHHHHHhcCCCEEEEeCCcccccChHHHHHHHHHHHHhcCC
Confidence 4677788988888888899977666543 4668888888888877665
No 489
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=29.54 E-value=2.6e+02 Score=25.27 Aligned_cols=41 Identities=5% Similarity=0.087 Sum_probs=22.8
Q ss_pred HHHHHcC-CCCEEEEE--ChHHHHHHHHHhcccCCCCceEEEeCH
Q 022234 220 TVLKQAL-SIPVVAVA--SPSAVRSWVNLISDTEQWSNSVACIGE 261 (300)
Q Consensus 220 ~~~~~l~-~~d~Ivft--S~s~v~~~~~~~~~~~~~~~~vv~IG~ 261 (300)
++.+++. ++|+|+.. +...+--+...+++.. .+.+++++=|
T Consensus 155 Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~-~~~kvi~Vep 198 (290)
T TIGR01138 155 EIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQN-PPVQIVGLQP 198 (290)
T ss_pred HHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 4555554 68998887 4444444444444332 3566666644
No 490
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=29.52 E-value=2e+02 Score=24.09 Aligned_cols=77 Identities=12% Similarity=0.207 Sum_probs=43.5
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEE-ChH---HHHHHHHHhcccCCC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA-SPS---AVRSWVNLISDTEQW 252 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~Ivft-S~s---~v~~~~~~~~~~~~~ 252 (300)
+|+|++.-... ...+.+.|++.|+++..+..|+. ..+ .+..+|.|+++ +|. ....+.+.++.. ..
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~-----~~~----~l~~~d~iIi~gGp~~~~~~~~~~~~i~~~-~~ 71 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDL-----DLD----EVENFSHILISPGPDVPRAYPQLFAMLERY-HQ 71 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCcc-----Chh----HhccCCEEEECCCCCChHHhhHHHHHHHHh-cC
Confidence 47788755443 45699999999987766665542 111 23467888866 554 333333333321 12
Q ss_pred CceE--EEeCHHHH
Q 022234 253 SNSV--ACIGETTA 264 (300)
Q Consensus 253 ~~~v--v~IG~~Ta 264 (300)
+.++ +|.|-..-
T Consensus 72 ~~PiLGIClG~Qll 85 (190)
T PRK06895 72 HKSILGVCLGHQTL 85 (190)
T ss_pred CCCEEEEcHHHHHH
Confidence 3344 46676543
No 491
>PRK09082 methionine aminotransferase; Validated
Probab=29.46 E-value=4.7e+02 Score=24.34 Aligned_cols=8 Identities=0% Similarity=-0.051 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 022234 285 GWVDSILE 292 (300)
Q Consensus 285 ~l~~ai~~ 292 (300)
.+++.+.+
T Consensus 253 ~l~~~~~~ 260 (386)
T PRK09082 253 ALSAEFRK 260 (386)
T ss_pred HHHHHHHH
Confidence 45544444
No 492
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.44 E-value=94 Score=27.07 Aligned_cols=89 Identities=22% Similarity=0.199 Sum_probs=51.0
Q ss_pred CCCCCeEEEeCCC---CchHHHHHHHHhCCCCEEEeeeeEeee----CCCch---hHHHhhhcCCccEEE----EeChHH
Q 022234 47 SNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQ----GPDTD---RLSSVLNDTIFDWII----ITSPEA 112 (300)
Q Consensus 47 ~l~g~~VlitR~~---~~~~~l~~~L~~~G~~v~~~P~i~~~~----~~~~~---~l~~~l~~~~~d~iv----FTS~~a 112 (300)
.+.|++|+||... .-...+++.|.++|+.++..-...... ..+.+ ++.+.+.....+..+ +++..+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 5789999999875 356899999999999877642111100 00111 121222111222222 578999
Q ss_pred HHHHHHHHHHc-CCCCceEEEEcc
Q 022234 113 GSVFLEAWKEA-GTPNVRIGVVGA 135 (300)
Q Consensus 113 v~~~~~~l~~~-~~~~~~i~aVG~ 135 (300)
++.+++.+.+. +.-+.-|.+.|.
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~ 106 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAY 106 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCC
Confidence 99888877653 322455555553
No 493
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=29.41 E-value=1e+02 Score=20.50 Aligned_cols=33 Identities=9% Similarity=0.042 Sum_probs=26.9
Q ss_pred CCCCCeEEEeC--CCCchHHHHHHHHhCCCCEEEe
Q 022234 47 SNSNPKVVVTR--ERGKNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 47 ~l~g~~VlitR--~~~~~~~l~~~L~~~G~~v~~~ 79 (300)
.+.|.++.++. .......+.+.+.+.|+.+...
T Consensus 2 ~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~ 36 (80)
T smart00292 2 LFKGKVFVITGKFDKNERDELKELIEALGGKVTSS 36 (80)
T ss_pred ccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecc
Confidence 57789999997 3456789999999999998753
No 494
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=29.41 E-value=2.7e+02 Score=25.15 Aligned_cols=68 Identities=12% Similarity=0.204 Sum_probs=42.1
Q ss_pred CCCCEEEEEChH---------HHHHHHHHhcccCC--CCceEEEeCHHHHHHHHHcCCCeEE----ecCCCCHHHHHHHH
Q 022234 226 LSIPVVAVASPS---------AVRSWVNLISDTEQ--WSNSVACIGETTASAAKRLGLKNVY----YPTHPGLEGWVDSI 290 (300)
Q Consensus 226 ~~~d~IvftS~s---------~v~~~~~~~~~~~~--~~~~vv~IG~~Ta~~l~~~G~~~~~----v~~~p~~~~l~~ai 290 (300)
++.-+|+|||=. .++...+.+..... ++..+++||.+..+.+.+.|.++.. ..+.++.+.+.+.+
T Consensus 74 ~~~~~ivitSDrGLCG~fN~~v~k~~~~~~~~~~~~g~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~ 153 (290)
T PF00231_consen 74 KKVLLIVITSDRGLCGGFNSNVIKAAESFIKEKDDQGKEVKLIVIGKKGRDFLKKRGYNIIASFNGISSDPTFEEASEIA 153 (290)
T ss_dssp SCEEEEEE--STSSSTTHHHHHHHHHHHHHCCSCTTTSEEEEEEESHHHHHHHHCSSTTEEEEEESBTSS--HHHHHHHH
T ss_pred ceEEEEEEecCccccccccHHHHHHHHHHHhhccccCCceEEEEeCcchhhhhhhCCCcceeeeecccchhhHHHHHHHH
Confidence 456688888754 45555555554321 3479999999999999999988532 24667777666444
Q ss_pred HHH
Q 022234 291 LEA 293 (300)
Q Consensus 291 ~~~ 293 (300)
.+.
T Consensus 154 ~~l 156 (290)
T PF00231_consen 154 EKL 156 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 495
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=29.33 E-value=44 Score=33.71 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=42.9
Q ss_pred cccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEe----eeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLEL----PLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 42 ~~~~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~----P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
+-+|+..+|++|++|.++.++.+++..|..+|+.+-.. |..+- ..+...+..+..++||-|-+
T Consensus 433 ~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eR------k~vE~~F~~q~l~~VVTTAA 499 (830)
T COG1202 433 TESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKER------KSVERAFAAQELAAVVTTAA 499 (830)
T ss_pred hhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHH------HHHHHHHhcCCcceEeehhh
Confidence 34569999999999999999999999999999766432 22111 12333344556666665544
No 496
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.27 E-value=2.4e+02 Score=24.30 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=41.1
Q ss_pred HHHHHHHHhC-CCCEEEeeeeEeeeCCCc----hhHHHhhh-cCCccEEEEeChHHHHHHHHHHHHcCCC-CceEEEEcc
Q 022234 63 GKLIKALAKH-RIDCLELPLIQHAQGPDT----DRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGA 135 (300)
Q Consensus 63 ~~l~~~L~~~-G~~v~~~P~i~~~~~~~~----~~l~~~l~-~~~~d~ivFTS~~av~~~~~~l~~~~~~-~~~i~aVG~ 135 (300)
.-+.+.++++ |..+.. .... . .+. ..+...+. ...+++|++.|-..+..+.+.+++.+.. ++.+++.+.
T Consensus 143 ~gf~~a~~~~~~~~~~~--~~~~-~-~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~~l~~~g~~~di~vig~d~ 218 (273)
T cd06310 143 EGFLEGLKEYPGIEIVA--TQYS-D-SDYAKALDITEDLLTANPDLKGIFGANEGSAVGAARAVRQAGKAGKVKVVGFDA 218 (273)
T ss_pred HHHHHHHHhCCCcEEEe--cccC-C-cCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 4455677777 665543 1111 1 111 12233332 2358899888888777777888877763 566666665
Q ss_pred ch
Q 022234 136 GT 137 (300)
Q Consensus 136 ~T 137 (300)
..
T Consensus 219 ~~ 220 (273)
T cd06310 219 SP 220 (273)
T ss_pred Ch
Confidence 53
No 497
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=29.22 E-value=4.8e+02 Score=24.35 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=46.9
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcC--C-CCEEEEE
Q 022234 163 GKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--S-IPVVAVA 234 (300)
Q Consensus 163 ~e~L~~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~--~-~d~Ivft 234 (300)
...++..+ .+.. -+++.++..+.. ...+.+.|++.|+.|....-|.. ...+....++.++ + .++|++.
T Consensus 120 ~~~~~~~~-~~~~-w~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~d~~~~L~~lk~~~~~~viv~~ 195 (382)
T cd06371 120 SRVLFTVL-RYFR-WAHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMGP--DEKGAREALKKVRSADRVRVVIMC 195 (382)
T ss_pred HHHHHHHH-HHCC-CeEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEecC--CHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44566544 3332 256666654433 56788899999987765544432 1122223444442 3 5777764
Q ss_pred Ch------HHHHHHHHHhcccC
Q 022234 235 SP------SAVRSWVNLISDTE 250 (300)
Q Consensus 235 S~------s~v~~~~~~~~~~~ 250 (300)
.. ..+..++..+.+.+
T Consensus 196 ~~~~~~~~~~~~~i~~qa~~~G 217 (382)
T cd06371 196 MHSVLIGGEEQRLLLETALEMG 217 (382)
T ss_pred eeccccCcHHHHHHHHHHHHcC
Confidence 43 45567777776654
No 498
>PRK08339 short chain dehydrogenase; Provisional
Probab=29.21 E-value=2.2e+02 Score=24.90 Aligned_cols=8 Identities=0% Similarity=-0.039 Sum_probs=3.9
Q ss_pred CCCEEEEE
Q 022234 227 SIPVVAVA 234 (300)
Q Consensus 227 ~~d~Ivft 234 (300)
++|+++..
T Consensus 85 ~iD~lv~n 92 (263)
T PRK08339 85 EPDIFFFS 92 (263)
T ss_pred CCcEEEEC
Confidence 45555443
No 499
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=29.09 E-value=72 Score=23.98 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=22.8
Q ss_pred EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHH
Q 022234 258 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 289 (300)
Q Consensus 258 ~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~a 289 (300)
.||+...+.+++.|+++......-+.++.+++
T Consensus 73 ~iG~~a~~~L~~~GI~v~~~~~~~~v~eal~~ 104 (106)
T cd00852 73 KIGDEPKEKLEEAGIEVIEAYAGEYIEEALLE 104 (106)
T ss_pred hhCccHHHHHHHCCCEEEEecCcCcHHHHHHH
Confidence 49999999999999998533322366655543
No 500
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=29.05 E-value=1.5e+02 Score=25.66 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=40.9
Q ss_pred HHHHHHHhC-CCCEEEeeeeEeeeCCCchhHHHhhh-cCCccEEEEeChHHHHHHHHHHHHcCC-CCceEEEEccc
Q 022234 64 KLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGT-PNVRIGVVGAG 136 (300)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~i~~~~~~~~~~l~~~l~-~~~~d~ivFTS~~av~~~~~~l~~~~~-~~~~i~aVG~~ 136 (300)
-+.+.++++ |.++................+.+.+. ..++++|+.++-..+..+...+.+.+. +++.+++.+..
T Consensus 143 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~~ 218 (270)
T cd06308 143 GFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANPDIDLVYAHNDPMALGAYLAAKRAGREKEIKFIGIDGL 218 (270)
T ss_pred HHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Confidence 445567777 66544221100000000123444442 345888888888888788888888776 46677777543
Done!