Query 022234
Match_columns 300
No_of_seqs 194 out of 1412
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:07:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4es6_A Uroporphyrinogen-III sy 100.0 7.7E-48 2.6E-52 343.5 25.2 241 46-292 2-252 (254)
2 3re1_A Uroporphyrinogen-III sy 100.0 3.7E-48 1.3E-52 348.7 18.3 244 46-295 10-263 (269)
3 3d8t_A Uroporphyrinogen-III sy 100.0 1.9E-47 6.5E-52 346.8 22.3 248 28-296 19-283 (286)
4 3mw8_A Uroporphyrinogen-III sy 100.0 4.7E-46 1.6E-50 329.2 23.6 233 50-291 1-239 (240)
5 1jr2_A Uroporphyrinogen-III sy 100.0 5.6E-46 1.9E-50 337.1 23.9 250 42-299 13-285 (286)
6 1wcw_A Uroporphyrinogen III sy 100.0 2.4E-45 8.2E-50 328.3 24.0 238 46-296 4-258 (261)
7 3p9z_A Uroporphyrinogen III co 100.0 1.2E-37 4E-42 273.9 18.6 202 75-293 17-224 (229)
8 3p9z_A Uroporphyrinogen III co 99.7 3E-16 1E-20 137.2 10.9 117 48-173 108-224 (229)
9 3re1_A Uroporphyrinogen-III sy 99.7 2.1E-16 7.3E-21 141.4 9.3 123 47-175 138-263 (269)
10 1jr2_A Uroporphyrinogen-III sy 99.6 4.4E-16 1.5E-20 140.5 10.7 122 47-174 154-280 (286)
11 4es6_A Uroporphyrinogen-III sy 99.6 7.6E-16 2.6E-20 136.5 10.6 120 47-172 130-252 (254)
12 1wcw_A Uroporphyrinogen III sy 99.6 6.4E-16 2.2E-20 137.4 7.7 118 50-173 130-255 (261)
13 3d8t_A Uroporphyrinogen-III sy 99.6 1.4E-15 4.6E-20 137.3 9.1 118 50-173 155-280 (286)
14 3mw8_A Uroporphyrinogen-III sy 99.6 1.4E-15 4.6E-20 133.7 7.6 120 46-171 116-239 (240)
15 3gv0_A Transcriptional regulat 96.5 0.0061 2.1E-07 53.3 7.6 189 64-273 31-237 (288)
16 3gbv_A Putative LACI-family tr 96.4 0.07 2.4E-06 46.4 13.8 193 64-273 30-246 (304)
17 3g85_A Transcriptional regulat 96.3 0.029 9.9E-07 48.8 10.9 181 63-263 32-229 (289)
18 3egc_A Putative ribose operon 95.9 0.013 4.5E-07 51.1 6.7 180 63-263 28-225 (291)
19 3k4h_A Putative transcriptiona 95.8 0.021 7.2E-07 49.7 7.4 180 64-263 34-231 (292)
20 3qk7_A Transcriptional regulat 95.8 0.037 1.3E-06 48.4 8.9 182 63-263 30-226 (294)
21 3h75_A Periplasmic sugar-bindi 95.7 0.075 2.6E-06 47.7 10.8 216 50-277 3-260 (350)
22 3l49_A ABC sugar (ribose) tran 95.5 0.17 5.9E-06 43.7 12.3 215 50-288 5-253 (291)
23 3g1w_A Sugar ABC transporter; 95.2 0.062 2.1E-06 47.0 8.4 202 50-269 4-232 (305)
24 2q5c_A NTRC family transcripti 95.2 0.49 1.7E-05 39.4 13.5 131 127-295 51-182 (196)
25 3d8u_A PURR transcriptional re 95.1 0.078 2.7E-06 45.5 8.6 176 64-263 24-220 (275)
26 3kke_A LACI family transcripti 95.0 0.084 2.9E-06 46.3 8.8 178 63-263 35-236 (303)
27 3gyb_A Transcriptional regulat 94.8 0.068 2.3E-06 46.1 7.4 174 64-263 26-215 (280)
28 3k9c_A Transcriptional regulat 94.8 0.076 2.6E-06 46.3 7.7 176 63-262 31-223 (289)
29 2pju_A Propionate catabolism o 94.5 0.83 2.8E-05 38.9 13.4 129 128-295 64-193 (225)
30 3tb6_A Arabinose metabolism tr 94.5 0.18 6.3E-06 43.5 9.4 192 51-263 16-240 (298)
31 2yxb_A Coenzyme B12-dependent 94.5 0.42 1.4E-05 38.5 10.8 112 177-295 18-144 (161)
32 3d4o_A Dipicolinate synthase s 94.4 0.074 2.5E-06 47.2 6.7 207 48-274 3-262 (293)
33 2rir_A Dipicolinate synthase, 94.4 0.091 3.1E-06 46.7 7.3 175 46-237 3-225 (300)
34 3rot_A ABC sugar transporter, 94.2 0.073 2.5E-06 46.5 6.2 203 50-272 3-238 (297)
35 3huu_A Transcription regulator 94.2 0.074 2.5E-06 46.7 6.2 177 64-263 48-241 (305)
36 3bbl_A Regulatory protein of L 94.1 0.27 9.3E-06 42.5 9.7 179 64-263 29-227 (287)
37 3c3k_A Alanine racemase; struc 94.1 1 3.4E-05 38.8 13.4 174 64-262 29-222 (285)
38 3dbi_A Sugar-binding transcrip 93.9 0.19 6.4E-06 44.8 8.5 178 64-262 84-280 (338)
39 2fep_A Catabolite control prot 93.9 0.32 1.1E-05 42.1 9.7 176 64-263 37-234 (289)
40 3hcw_A Maltose operon transcri 93.8 0.2 7E-06 43.6 8.2 178 63-263 32-231 (295)
41 2rgy_A Transcriptional regulat 93.7 0.25 8.5E-06 42.9 8.7 193 51-262 9-227 (290)
42 3e61_A Putative transcriptiona 93.7 0.12 4.2E-06 44.3 6.7 174 63-262 28-215 (277)
43 3jvd_A Transcriptional regulat 93.7 0.084 2.9E-06 47.2 5.7 182 51-263 65-270 (333)
44 3o74_A Fructose transport syst 93.7 0.16 5.5E-06 43.4 7.3 174 63-262 22-217 (272)
45 3e3m_A Transcriptional regulat 93.5 0.28 9.4E-06 44.1 8.9 176 64-263 91-289 (355)
46 3brq_A HTH-type transcriptiona 93.5 0.38 1.3E-05 41.5 9.5 177 64-263 42-239 (296)
47 3jy6_A Transcriptional regulat 93.5 0.67 2.3E-05 39.7 11.1 174 64-262 28-219 (276)
48 2h0a_A TTHA0807, transcription 93.4 0.3 1E-05 41.7 8.7 180 64-263 20-219 (276)
49 3hs3_A Ribose operon repressor 93.3 0.038 1.3E-06 47.9 2.7 171 63-262 30-216 (277)
50 3ksm_A ABC-type sugar transpor 93.3 0.23 7.9E-06 42.4 7.7 185 63-269 20-232 (276)
51 2fvy_A D-galactose-binding per 93.1 3.5 0.00012 35.4 15.2 192 63-272 22-249 (309)
52 1dbq_A Purine repressor; trans 92.9 0.19 6.6E-06 43.3 6.6 177 64-262 28-225 (289)
53 2vk2_A YTFQ, ABC transporter p 92.7 1.6 5.4E-05 37.9 12.4 213 64-295 23-264 (306)
54 3lft_A Uncharacterized protein 92.5 1.5 5.2E-05 38.0 12.0 184 63-262 21-222 (295)
55 1ccw_A Protein (glutamate muta 92.3 1.7 5.9E-05 33.7 10.8 110 50-171 3-131 (137)
56 2yxb_A Coenzyme B12-dependent 92.2 1.4 4.8E-05 35.3 10.5 101 49-160 17-130 (161)
57 3clk_A Transcription regulator 92.0 0.65 2.2E-05 40.1 8.8 191 51-263 9-224 (290)
58 2o20_A Catabolite control prot 91.8 0.96 3.3E-05 40.0 10.0 175 64-262 84-277 (332)
59 1ccw_A Protein (glutamate muta 91.6 0.55 1.9E-05 36.6 7.1 101 188-295 19-135 (137)
60 3kjx_A Transcriptional regulat 91.2 0.25 8.7E-06 44.1 5.4 178 64-262 89-285 (344)
61 4fe7_A Xylose operon regulator 91.1 0.93 3.2E-05 41.6 9.3 164 64-249 45-225 (412)
62 3cs3_A Sugar-binding transcrip 91.0 1.2 4E-05 38.1 9.4 170 63-263 28-216 (277)
63 2qh8_A Uncharacterized protein 90.9 1.3 4.5E-05 38.6 9.8 184 64-262 28-229 (302)
64 2h3h_A Sugar ABC transporter, 90.7 0.64 2.2E-05 40.7 7.6 183 65-269 22-227 (313)
65 3miz_A Putative transcriptiona 90.4 0.22 7.4E-06 43.4 4.2 178 64-262 35-235 (301)
66 2hsg_A Glucose-resistance amyl 90.4 0.75 2.6E-05 40.6 7.8 176 64-263 81-278 (332)
67 3l6u_A ABC-type sugar transpor 90.0 3.1 0.00011 35.5 11.4 177 63-262 28-230 (293)
68 1qpz_A PURA, protein (purine n 90.0 0.57 1.9E-05 41.6 6.7 177 64-262 79-276 (340)
69 2dri_A D-ribose-binding protei 89.8 1.8 6E-05 36.9 9.5 175 64-261 22-216 (271)
70 3fwz_A Inner membrane protein 89.5 2.5 8.6E-05 32.5 9.3 66 226-296 70-139 (140)
71 3k5p_A D-3-phosphoglycerate de 89.3 2.8 9.5E-05 39.1 10.9 172 46-238 11-219 (416)
72 2iks_A DNA-binding transcripti 88.8 2.5 8.5E-05 36.3 9.8 174 64-263 41-236 (293)
73 2hmt_A YUAA protein; RCK, KTN, 88.7 1.5 5.2E-05 33.2 7.5 114 48-170 4-136 (144)
74 1lss_A TRK system potassium up 88.7 4 0.00014 30.6 9.9 115 50-171 4-135 (140)
75 2g1u_A Hypothetical protein TM 88.5 2.2 7.7E-05 33.3 8.5 117 46-171 15-150 (155)
76 4gx0_A TRKA domain protein; me 88.0 6.8 0.00023 37.5 13.1 219 49-281 126-381 (565)
77 1mio_B Nitrogenase molybdenum 87.6 17 0.00058 34.0 15.3 199 61-275 183-407 (458)
78 3c85_A Putative glutathione-re 87.6 4.3 0.00015 32.5 9.9 117 177-294 39-175 (183)
79 1jx6_A LUXP protein; protein-l 87.5 2 6.8E-05 37.9 8.5 191 64-269 65-278 (342)
80 2ioy_A Periplasmic sugar-bindi 87.5 3.5 0.00012 35.2 9.9 174 64-261 22-217 (283)
81 3h5t_A Transcriptional regulat 87.4 0.65 2.2E-05 41.7 5.2 161 97-275 124-317 (366)
82 3llv_A Exopolyphosphatase-rela 87.2 4.6 0.00016 30.7 9.5 116 49-171 5-136 (141)
83 4dik_A Flavoprotein; TM0755, e 86.9 3.2 0.00011 38.5 9.7 84 189-274 283-382 (410)
84 2qu7_A Putative transcriptiona 86.9 0.38 1.3E-05 41.5 3.2 175 65-263 29-226 (288)
85 2rjo_A Twin-arginine transloca 86.5 2.2 7.5E-05 37.5 8.1 182 64-263 26-234 (332)
86 2pln_A HP1043, response regula 86.2 8.4 0.00029 28.5 11.1 109 176-297 17-134 (137)
87 3c85_A Putative glutathione-re 86.2 3.6 0.00012 32.9 8.7 118 47-171 36-172 (183)
88 3d02_A Putative LACI-type tran 85.9 2 6.7E-05 37.0 7.3 190 64-273 25-238 (303)
89 3m9w_A D-xylose-binding peripl 85.7 4.8 0.00016 34.8 9.9 179 63-261 22-223 (313)
90 3h5o_A Transcriptional regulat 85.6 1.4 4.8E-05 39.0 6.4 174 64-261 83-276 (339)
91 2x7x_A Sensor protein; transfe 85.2 6.2 0.00021 34.5 10.4 174 66-262 28-224 (325)
92 2g1u_A Hypothetical protein TM 85.0 3.5 0.00012 32.2 7.8 113 176-290 18-149 (155)
93 2hmt_A YUAA protein; RCK, KTN, 84.8 5.6 0.00019 29.8 8.8 64 225-290 68-136 (144)
94 3llv_A Exopolyphosphatase-rela 84.5 7.6 0.00026 29.4 9.5 68 226-297 69-138 (141)
95 3bil_A Probable LACI-family tr 84.4 8.1 0.00028 34.2 10.9 174 64-263 87-280 (348)
96 1byk_A Protein (trehalose oper 83.2 8.5 0.00029 32.0 10.1 171 64-265 23-210 (255)
97 3brs_A Periplasmic binding pro 82.5 1.4 4.7E-05 37.7 4.8 178 64-263 28-227 (289)
98 4eyg_A Twin-arginine transloca 82.5 12 0.00039 33.0 11.1 150 98-260 69-230 (368)
99 3fwz_A Inner membrane protein 82.5 8.4 0.00029 29.4 9.0 112 51-170 8-137 (140)
100 1lss_A TRK system potassium up 82.3 13 0.00044 27.6 9.9 55 225-279 67-123 (140)
101 3gt7_A Sensor protein; structu 82.3 14 0.00049 28.0 13.5 110 177-297 7-128 (154)
102 1id1_A Putative potassium chan 82.2 6.1 0.00021 30.6 8.1 66 225-295 69-138 (153)
103 2fn9_A Ribose ABC transporter, 82.2 4.2 0.00015 34.6 7.8 175 64-261 23-225 (290)
104 1gud_A ALBP, D-allose-binding 82.2 9.9 0.00034 32.4 10.3 183 64-263 22-230 (288)
105 1id1_A Putative potassium chan 82.1 13 0.00043 28.7 10.0 115 49-171 2-138 (153)
106 1tjy_A Sugar transport protein 81.9 7.4 0.00025 33.9 9.4 198 51-271 4-234 (316)
107 2i2x_B MTAC, methyltransferase 81.7 15 0.00051 31.5 11.1 111 49-171 122-242 (258)
108 5nul_A Flavodoxin; electron tr 81.6 8.9 0.00031 28.9 8.8 93 190-294 17-132 (138)
109 3aek_B Light-independent proto 81.6 36 0.0012 32.4 14.8 193 61-275 171-371 (525)
110 1y80_A Predicted cobalamin bin 81.2 8.6 0.00029 31.7 9.1 90 50-144 88-188 (210)
111 3gl9_A Response regulator; bet 81.0 13 0.00046 26.8 12.7 107 178-295 3-121 (122)
112 1jye_A Lactose operon represso 80.8 3.5 0.00012 36.6 7.0 172 64-261 82-275 (349)
113 3td9_A Branched chain amino ac 80.6 28 0.00094 30.5 13.0 148 98-259 78-236 (366)
114 2hqb_A Transcriptional activat 80.5 6.1 0.00021 34.3 8.3 166 64-248 28-202 (296)
115 3aek_A Light-independent proto 80.2 3.6 0.00012 38.5 7.0 201 52-274 185-398 (437)
116 2fp4_A Succinyl-COA ligase [GD 79.4 30 0.001 30.4 12.6 242 46-296 9-301 (305)
117 2xij_A Methylmalonyl-COA mutas 79.2 26 0.0009 35.1 13.1 110 49-170 603-725 (762)
118 2wm8_A MDP-1, magnesium-depend 79.0 8.6 0.00029 30.6 8.3 108 163-296 73-182 (187)
119 2pln_A HP1043, response regula 78.9 17 0.00058 26.7 10.2 114 46-173 14-130 (137)
120 3hut_A Putative branched-chain 78.8 25 0.00086 30.6 12.0 146 99-259 70-226 (358)
121 2wm8_A MDP-1, magnesium-depend 78.6 8 0.00027 30.8 7.9 105 57-172 68-178 (187)
122 3npg_A Uncharacterized DUF364 78.3 2.1 7.2E-05 37.0 4.4 143 131-292 82-232 (249)
123 2xij_A Methylmalonyl-COA mutas 78.2 16 0.00054 36.7 11.2 111 178-295 605-730 (762)
124 3hdv_A Response regulator; PSI 77.7 18 0.00062 26.4 9.9 111 177-298 7-129 (136)
125 4dad_A Putative pilus assembly 77.3 18 0.00061 26.9 9.3 113 176-299 19-144 (146)
126 4evq_A Putative ABC transporte 77.3 25 0.00085 30.8 11.6 149 100-260 81-239 (375)
127 3ezx_A MMCP 1, monomethylamine 76.8 13 0.00046 31.0 9.0 91 49-144 91-194 (215)
128 3eod_A Protein HNR; response r 75.4 20 0.0007 25.9 10.2 113 46-172 3-122 (130)
129 3l9w_A Glutathione-regulated p 75.4 19 0.00064 33.3 10.4 73 220-293 59-137 (413)
130 1oi7_A Succinyl-COA synthetase 75.4 41 0.0014 29.3 12.6 179 50-236 7-208 (288)
131 3s2u_A UDP-N-acetylglucosamine 75.2 26 0.0009 31.3 11.2 105 178-297 212-325 (365)
132 2fqx_A Membrane lipoprotein TM 75.1 13 0.00046 32.5 9.0 167 64-248 28-209 (318)
133 3gt7_A Sensor protein; structu 74.9 25 0.00084 26.5 10.5 110 49-171 6-122 (154)
134 3ctp_A Periplasmic binding pro 74.6 21 0.00073 31.0 10.3 171 64-262 81-269 (330)
135 2amj_A Modulator of drug activ 74.0 4.8 0.00016 33.3 5.4 66 177-246 12-96 (204)
136 3h9u_A Adenosylhomocysteinase; 73.9 33 0.0011 31.9 11.6 35 44-78 37-72 (436)
137 3lkv_A Uncharacterized conserv 73.7 30 0.001 29.9 10.9 196 51-261 9-228 (302)
138 3kht_A Response regulator; PSI 73.7 25 0.00084 26.0 11.6 112 177-296 5-128 (144)
139 4imr_A 3-oxoacyl-(acyl-carrier 73.4 10 0.00034 32.6 7.6 103 26-134 11-118 (275)
140 1sc6_A PGDH, D-3-phosphoglycer 73.3 23 0.00079 32.6 10.4 165 50-238 4-208 (404)
141 2q1w_A Putative nucleotide sug 73.1 6.6 0.00023 34.5 6.5 98 37-136 8-138 (333)
142 3hly_A Flavodoxin-like domain; 73.0 31 0.001 26.9 9.9 91 191-286 20-128 (161)
143 3lkb_A Probable branched-chain 72.7 35 0.0012 30.2 11.4 149 99-259 73-230 (392)
144 3l4b_C TRKA K+ channel protien 72.4 22 0.00076 29.1 9.3 114 51-171 1-132 (218)
145 5nul_A Flavodoxin; electron tr 71.4 4.2 0.00015 30.8 4.2 62 62-134 16-86 (138)
146 3grc_A Sensor protein, kinase; 70.6 28 0.00097 25.4 12.6 111 177-298 6-129 (140)
147 2iuf_A Catalase; oxidoreductas 69.1 11 0.00038 37.3 7.5 115 176-299 528-680 (688)
148 3rht_A (gatase1)-like protein; 68.8 12 0.0004 32.4 6.8 74 50-135 4-87 (259)
149 4dgs_A Dehydrogenase; structur 68.8 24 0.00083 31.6 9.2 167 47-238 27-233 (340)
150 3fni_A Putative diflavin flavo 68.6 40 0.0014 26.3 10.3 93 190-286 23-133 (159)
151 1xrs_B D-lysine 5,6-aminomutas 68.6 42 0.0014 29.0 10.3 128 162-296 105-258 (262)
152 3eaf_A ABC transporter, substr 68.2 33 0.0011 30.4 10.2 146 99-259 74-231 (391)
153 1u7z_A Coenzyme A biosynthesis 68.2 10 0.00034 32.2 6.1 34 46-79 4-54 (226)
154 1pea_A Amidase operon; gene re 67.9 25 0.00087 31.1 9.3 149 99-260 73-233 (385)
155 3lop_A Substrate binding perip 67.9 40 0.0014 29.4 10.6 146 100-260 72-229 (364)
156 2q9u_A A-type flavoprotein; fl 67.7 70 0.0024 28.8 12.5 103 178-285 257-388 (414)
157 1fs0_G ATP synthase gamma subu 67.5 14 0.00048 31.2 7.0 69 227-295 57-143 (230)
158 3kto_A Response regulator rece 67.2 34 0.0012 25.0 9.6 109 178-298 7-128 (136)
159 3i42_A Response regulator rece 67.1 21 0.00073 25.6 7.3 112 178-299 4-125 (127)
160 1sqs_A Conserved hypothetical 66.8 13 0.00046 31.2 6.8 57 191-247 23-106 (242)
161 2q62_A ARSH; alpha/beta, flavo 66.2 13 0.00043 31.9 6.5 71 178-248 35-126 (247)
162 2i2x_B MTAC, methyltransferase 65.9 62 0.0021 27.5 11.7 109 176-295 122-243 (258)
163 1j4a_A D-LDH, D-lactate dehydr 65.8 46 0.0016 29.5 10.5 167 51-238 2-210 (333)
164 3d64_A Adenosylhomocysteinase; 65.3 52 0.0018 31.1 11.1 36 44-79 69-105 (494)
165 1req_A Methylmalonyl-COA mutas 65.0 56 0.0019 32.5 11.6 110 49-170 595-717 (727)
166 2fzv_A Putative arsenical resi 64.8 9.4 0.00032 33.4 5.5 71 178-248 59-151 (279)
167 3rht_A (gatase1)-like protein; 64.5 14 0.00048 31.9 6.5 72 178-260 5-86 (259)
168 3snr_A Extracellular ligand-bi 64.5 38 0.0013 29.2 9.6 146 99-259 67-222 (362)
169 3kp1_A D-ornithine aminomutase 64.3 76 0.0026 31.3 11.9 126 161-296 589-735 (763)
170 3hzh_A Chemotaxis response reg 64.1 31 0.0011 26.1 8.0 107 178-295 37-156 (157)
171 3qi7_A Putative transcriptiona 64.1 21 0.00071 32.6 7.8 187 98-298 84-294 (371)
172 3f2v_A General stress protein 63.6 4.6 0.00016 33.3 3.1 59 189-247 19-85 (192)
173 3kht_A Response regulator; PSI 63.5 41 0.0014 24.7 9.2 112 49-171 4-123 (144)
174 3gl9_A Response regulator; bet 63.2 38 0.0013 24.2 9.5 109 51-172 3-118 (122)
175 3i6i_A Putative leucoanthocyan 63.2 23 0.00078 31.1 7.9 34 46-79 6-40 (346)
176 3h7a_A Short chain dehydrogena 62.6 17 0.00057 30.6 6.6 85 46-134 3-92 (252)
177 4dik_A Flavoprotein; TM0755, e 62.4 20 0.00069 33.0 7.6 82 51-135 266-360 (410)
178 3l5o_A Uncharacterized protein 61.8 25 0.00085 30.6 7.6 115 46-172 137-253 (270)
179 3n0w_A ABC branched chain amin 61.5 59 0.002 28.5 10.5 139 99-250 71-221 (379)
180 3f6r_A Flavodoxin; FMN binding 61.3 9.3 0.00032 29.2 4.4 63 63-135 20-93 (148)
181 3lua_A Response regulator rece 61.1 45 0.0015 24.3 11.9 112 177-298 4-129 (140)
182 3ipc_A ABC transporter, substr 61.1 73 0.0025 27.5 10.9 146 100-259 68-225 (356)
183 1req_A Methylmalonyl-COA mutas 60.7 46 0.0016 33.1 10.1 112 178-296 597-723 (727)
184 1v8b_A Adenosylhomocysteinase; 60.5 45 0.0015 31.5 9.6 35 44-78 40-75 (479)
185 3eul_A Possible nitrate/nitrit 60.4 49 0.0017 24.5 10.4 114 176-298 14-137 (152)
186 2qr3_A Two-component system re 60.3 46 0.0016 24.1 11.6 108 178-297 4-127 (140)
187 2aef_A Calcium-gated potassium 60.2 17 0.00058 30.1 6.1 112 50-170 9-137 (234)
188 3lte_A Response regulator; str 59.8 45 0.0015 23.9 12.7 112 177-298 6-127 (132)
189 2xdq_A Light-independent proto 59.5 52 0.0018 30.5 10.0 140 51-207 197-347 (460)
190 3f6r_A Flavodoxin; FMN binding 59.3 41 0.0014 25.4 7.9 76 190-274 20-119 (148)
191 3m3p_A Glutamine amido transfe 58.8 9.6 0.00033 32.7 4.4 54 49-110 2-57 (250)
192 3h1g_A Chemotaxis protein CHEY 58.8 48 0.0016 23.8 10.6 110 178-297 6-128 (129)
193 3pdi_B Nitrogenase MOFE cofact 58.2 1.2E+02 0.004 28.2 15.7 202 50-274 169-396 (458)
194 3t6k_A Response regulator rece 58.0 52 0.0018 24.0 12.4 109 178-297 5-125 (136)
195 3l4e_A Uncharacterized peptida 57.9 11 0.00037 31.4 4.4 73 46-125 23-102 (206)
196 2qxy_A Response regulator; reg 57.9 52 0.0018 24.0 13.5 110 177-297 4-122 (142)
197 2vzf_A NADH-dependent FMN redu 57.2 8.3 0.00028 31.4 3.6 58 191-248 24-97 (197)
198 1usg_A Leucine-specific bindin 56.8 92 0.0032 26.5 12.4 145 100-258 68-224 (346)
199 2zay_A Response regulator rece 56.8 55 0.0019 24.0 11.9 110 177-297 8-129 (147)
200 2j48_A Two-component sensor ki 56.5 46 0.0016 22.9 8.5 108 50-173 1-115 (119)
201 2k6g_A Replication factor C su 56.3 14 0.00047 27.5 4.3 33 45-77 30-64 (109)
202 4gx0_A TRKA domain protein; me 56.2 23 0.00077 33.8 7.0 103 178-280 349-464 (565)
203 3kp1_A D-ornithine aminomutase 56.0 45 0.0015 32.8 8.8 110 50-171 602-730 (763)
204 4e5n_A Thermostable phosphite 55.9 84 0.0029 27.8 10.3 139 50-211 2-176 (330)
205 1p90_A NAFY protein, hypotheti 55.9 14 0.00049 28.8 4.6 41 258-298 75-115 (145)
206 3i42_A Response regulator rece 55.9 48 0.0016 23.6 7.5 110 49-174 2-120 (127)
207 3njr_A Precorrin-6Y methylase; 55.8 46 0.0016 26.8 8.1 101 108-216 85-187 (204)
208 3i09_A Periplasmic branched-ch 55.4 1E+02 0.0036 26.7 11.9 139 99-250 69-219 (375)
209 3h5l_A Putative branched-chain 55.3 37 0.0013 30.4 8.0 93 49-143 163-263 (419)
210 1p9l_A Dihydrodipicolinate red 55.2 96 0.0033 26.2 10.7 94 179-284 2-108 (245)
211 2jba_A Phosphate regulon trans 55.2 53 0.0018 23.2 9.5 111 178-299 3-125 (127)
212 3tem_A Ribosyldihydronicotinam 55.2 5.9 0.0002 33.4 2.4 70 178-247 2-119 (228)
213 2hpv_A FMN-dependent NADH-azor 55.0 21 0.00073 28.9 5.8 57 191-247 25-121 (208)
214 3k1y_A Oxidoreductase; structu 54.8 16 0.00054 29.9 4.9 79 178-256 12-121 (191)
215 2iw1_A Lipopolysaccharide core 54.8 1E+02 0.0035 26.5 11.1 174 101-297 136-338 (374)
216 4id9_A Short-chain dehydrogena 54.8 55 0.0019 28.3 8.9 89 43-135 12-126 (347)
217 2fz5_A Flavodoxin; alpha/beta 54.7 14 0.00048 27.5 4.3 61 63-134 18-87 (137)
218 2rdm_A Response regulator rece 54.5 56 0.0019 23.3 8.7 112 177-299 5-126 (132)
219 2qip_A Protein of unknown func 54.4 7.7 0.00026 30.9 2.8 82 61-144 62-152 (165)
220 2pzm_A Putative nucleotide sug 54.1 27 0.00091 30.4 6.7 38 42-79 12-50 (330)
221 1y80_A Predicted cobalamin bin 54.1 55 0.0019 26.7 8.3 107 177-293 88-208 (210)
222 3hdg_A Uncharacterized protein 54.0 59 0.002 23.4 10.8 107 178-296 8-125 (137)
223 1xg5_A ARPG836; short chain de 54.0 97 0.0033 25.9 10.6 33 47-79 29-62 (279)
224 4fs3_A Enoyl-[acyl-carrier-pro 53.8 45 0.0015 28.1 7.9 84 47-134 3-95 (256)
225 2q62_A ARSH; alpha/beta, flavo 53.3 23 0.00078 30.2 5.9 56 28-83 10-75 (247)
226 3l7n_A Putative uncharacterize 53.2 24 0.00083 29.5 6.0 52 51-110 1-54 (236)
227 2nu8_A Succinyl-COA ligase [AD 53.2 1.1E+02 0.0038 26.4 11.7 224 50-294 7-287 (288)
228 2cok_A Poly [ADP-ribose] polym 53.0 20 0.00068 26.8 4.7 33 45-77 8-41 (113)
229 3l9w_A Glutathione-regulated p 53.0 65 0.0022 29.5 9.3 102 50-159 4-123 (413)
230 3fro_A GLGA glycogen synthase; 52.9 97 0.0033 27.3 10.5 175 100-295 187-394 (439)
231 2xdq_B Light-independent proto 52.9 95 0.0032 29.3 10.7 194 61-274 184-393 (511)
232 2gkg_A Response regulator homo 52.5 57 0.002 22.9 10.3 110 178-297 6-126 (127)
233 2ebu_A Replication factor C su 52.3 18 0.00063 27.0 4.5 32 46-77 21-54 (112)
234 3nhm_A Response regulator; pro 52.0 62 0.0021 23.1 8.5 109 178-298 5-124 (133)
235 1fs0_G ATP synthase gamma subu 51.9 14 0.00047 31.3 4.1 48 101-154 57-115 (230)
236 1rtt_A Conserved hypothetical 51.9 24 0.00083 28.2 5.6 69 179-248 8-100 (193)
237 3m6m_D Sensory/regulatory prot 51.5 70 0.0024 23.5 10.5 115 46-173 10-133 (143)
238 2qh8_A Uncharacterized protein 51.1 1.1E+02 0.0038 25.8 10.5 16 226-241 68-83 (302)
239 1xrs_B D-lysine 5,6-aminomutas 51.1 35 0.0012 29.4 6.7 111 49-171 119-253 (262)
240 2yq5_A D-isomer specific 2-hyd 50.7 12 0.00041 33.7 3.8 172 50-236 1-209 (343)
241 3sg0_A Extracellular ligand-bi 50.6 41 0.0014 29.4 7.4 168 91-271 79-259 (386)
242 3uf0_A Short-chain dehydrogena 50.6 85 0.0029 26.5 9.2 99 27-134 12-115 (273)
243 3jte_A Response regulator rece 50.0 71 0.0024 23.2 9.4 106 178-295 4-122 (143)
244 3l4b_C TRKA K+ channel protien 49.8 33 0.0011 27.9 6.2 68 225-296 63-133 (218)
245 2gk4_A Conserved hypothetical 49.7 48 0.0016 28.0 7.2 31 49-79 2-49 (232)
246 3fni_A Putative diflavin flavo 49.6 44 0.0015 26.0 6.7 68 63-135 23-95 (159)
247 4evq_A Putative ABC transporte 49.5 43 0.0015 29.2 7.3 93 49-143 150-248 (375)
248 3fvw_A Putative NAD(P)H-depend 49.1 46 0.0016 26.8 6.9 55 192-248 25-95 (192)
249 1l7b_A DNA ligase; BRCT, autos 49.1 17 0.00058 26.1 3.7 33 45-77 5-38 (92)
250 2aef_A Calcium-gated potassium 49.0 17 0.00059 30.1 4.3 54 225-279 69-126 (234)
251 1rli_A Trp repressor binding p 48.7 20 0.0007 28.2 4.6 28 220-247 64-98 (184)
252 3r6w_A FMN-dependent NADH-azor 48.5 15 0.00052 30.1 3.8 56 191-246 24-113 (212)
253 3lkb_A Probable branched-chain 48.5 91 0.0031 27.3 9.5 85 48-134 141-231 (392)
254 4dim_A Phosphoribosylglycinami 48.4 61 0.0021 29.0 8.3 77 48-124 5-95 (403)
255 2zay_A Response regulator rece 48.4 77 0.0026 23.1 8.8 111 48-171 6-123 (147)
256 2ekl_A D-3-phosphoglycerate de 48.4 1.4E+02 0.0047 26.1 11.2 140 47-206 2-171 (313)
257 1t0i_A YLR011WP; FMN binding p 48.2 21 0.00073 28.4 4.7 57 191-247 22-111 (191)
258 3ruf_A WBGU; rossmann fold, UD 48.1 39 0.0013 29.4 6.8 33 47-79 22-55 (351)
259 3uce_A Dehydrogenase; rossmann 48.1 12 0.0004 30.8 3.1 32 48-79 4-36 (223)
260 2gk3_A Putative cytoplasmic pr 48.0 15 0.00052 31.4 3.9 48 57-109 37-85 (256)
261 1e5d_A Rubredoxin\:oxygen oxid 47.9 63 0.0022 28.8 8.3 104 177-285 252-381 (402)
262 3hly_A Flavodoxin-like domain; 47.6 52 0.0018 25.6 6.8 67 63-135 19-90 (161)
263 4egb_A DTDP-glucose 4,6-dehydr 47.5 21 0.00072 31.1 4.9 63 48-110 22-107 (346)
264 3l5o_A Uncharacterized protein 47.1 32 0.0011 29.8 5.8 109 176-291 140-252 (270)
265 1qgu_B Protein (nitrogenase mo 46.9 27 0.00094 33.2 5.8 139 62-208 233-391 (519)
266 2g76_A 3-PGDH, D-3-phosphoglyc 46.7 1.4E+02 0.0047 26.5 10.2 144 45-209 21-197 (335)
267 1e6u_A GDP-fucose synthetase; 46.7 14 0.00048 31.9 3.5 62 49-110 2-64 (321)
268 4da9_A Short-chain dehydrogena 46.5 23 0.00079 30.3 4.9 101 26-135 11-117 (280)
269 3h1g_A Chemotaxis protein CHEY 46.5 77 0.0026 22.6 8.9 110 48-172 3-123 (129)
270 2yxd_A Probable cobalt-precorr 46.1 95 0.0033 23.5 8.9 95 108-212 65-160 (183)
271 3otg_A CALG1; calicheamicin, T 45.7 1.6E+02 0.0053 25.9 19.3 67 225-297 306-377 (412)
272 4id3_A DNA repair protein REV1 45.2 29 0.00098 24.0 4.4 33 45-77 5-38 (92)
273 3cg4_A Response regulator rece 45.1 66 0.0023 23.3 6.8 109 47-171 4-122 (142)
274 3ddh_A Putative haloacid dehal 45.0 37 0.0013 26.9 5.7 89 59-159 107-203 (234)
275 1dxy_A D-2-hydroxyisocaproate 45.0 81 0.0028 27.9 8.4 167 51-238 1-208 (333)
276 3okp_A GDP-mannose-dependent a 44.9 83 0.0028 27.3 8.5 19 278-296 326-344 (394)
277 3e8x_A Putative NAD-dependent 44.6 21 0.00071 29.3 4.2 34 46-79 17-51 (236)
278 3snr_A Extracellular ligand-bi 44.5 69 0.0024 27.5 7.8 92 49-142 134-232 (362)
279 3ek2_A Enoyl-(acyl-carrier-pro 44.4 70 0.0024 26.5 7.6 85 46-134 10-101 (271)
280 2rjn_A Response regulator rece 44.1 94 0.0032 22.9 11.6 114 46-172 3-122 (154)
281 3e48_A Putative nucleoside-dip 44.1 1.4E+02 0.0048 24.9 9.8 72 51-124 1-97 (289)
282 3dzz_A Putative pyridoxal 5'-p 43.9 81 0.0028 27.5 8.3 74 49-124 108-193 (391)
283 3oec_A Carveol dehydrogenase ( 43.8 62 0.0021 28.1 7.4 89 46-134 42-144 (317)
284 2hqr_A Putative transcriptiona 43.7 1.2E+02 0.0041 24.1 9.9 106 179-296 2-115 (223)
285 2f9f_A First mannosyl transfer 43.6 1.1E+02 0.0037 23.5 8.6 121 165-298 40-164 (177)
286 3i45_A Twin-arginine transloca 43.5 1.1E+02 0.0039 26.7 9.2 147 100-259 72-233 (387)
287 1kjq_A GART 2, phosphoribosylg 43.3 43 0.0015 29.9 6.4 74 49-122 10-95 (391)
288 3gbv_A Putative LACI-family tr 43.3 98 0.0034 25.8 8.5 76 62-138 158-236 (304)
289 3eod_A Protein HNR; response r 43.3 86 0.0029 22.2 11.6 109 176-296 6-126 (130)
290 3hv2_A Response regulator/HD d 43.1 98 0.0033 22.8 10.4 112 46-171 10-128 (153)
291 2yvq_A Carbamoyl-phosphate syn 43.1 20 0.00067 27.8 3.5 64 46-111 22-106 (143)
292 3hv2_A Response regulator/HD d 42.9 99 0.0034 22.8 12.9 108 177-296 14-133 (153)
293 4gi5_A Quinone reductase; prot 42.8 17 0.00057 31.8 3.4 38 47-84 19-64 (280)
294 3t6k_A Response regulator rece 42.7 94 0.0032 22.5 9.6 108 49-172 3-120 (136)
295 4b79_A PA4098, probable short- 42.6 77 0.0026 26.8 7.5 33 48-80 9-42 (242)
296 3kwm_A Ribose-5-phosphate isom 42.3 56 0.0019 27.5 6.4 48 226-274 25-73 (224)
297 4gi5_A Quinone reductase; prot 42.3 16 0.00054 32.0 3.1 70 178-247 23-139 (280)
298 2xok_G ATP synthase subunit ga 42.0 1.2E+02 0.004 26.8 8.8 63 227-291 104-181 (311)
299 3edm_A Short chain dehydrogena 41.9 69 0.0024 26.7 7.2 75 46-123 4-83 (259)
300 4g2n_A D-isomer specific 2-hyd 41.8 1.9E+02 0.0064 25.7 15.0 167 49-237 27-237 (345)
301 3lte_A Response regulator; str 41.8 91 0.0031 22.1 11.1 112 49-173 5-122 (132)
302 4fgs_A Probable dehydrogenase 41.8 28 0.00094 30.2 4.6 82 28-122 13-99 (273)
303 3hdg_A Uncharacterized protein 41.7 94 0.0032 22.2 10.3 106 50-172 7-121 (137)
304 4eyg_A Twin-arginine transloca 41.5 69 0.0023 27.7 7.4 94 49-143 138-240 (368)
305 3oet_A Erythronate-4-phosphate 41.5 24 0.00082 32.3 4.3 162 50-238 3-181 (381)
306 3f6p_A Transcriptional regulat 41.4 90 0.0031 21.9 12.8 106 178-296 3-119 (120)
307 3grc_A Sensor protein, kinase; 41.3 97 0.0033 22.3 10.3 110 50-172 6-123 (140)
308 2gkg_A Response regulator homo 41.2 89 0.003 21.8 9.0 110 50-172 5-121 (127)
309 3rd5_A Mypaa.01249.C; ssgcid, 41.1 86 0.0029 26.6 7.8 34 46-79 12-46 (291)
310 2yv2_A Succinyl-COA synthetase 41.0 1.8E+02 0.0061 25.2 11.3 175 51-236 14-215 (297)
311 2ohh_A Type A flavoprotein FPR 41.0 35 0.0012 30.6 5.4 93 177-274 256-373 (404)
312 2iuf_A Catalase; oxidoreductas 40.9 72 0.0024 31.5 7.8 92 46-144 525-648 (688)
313 1qv9_A F420-dependent methylen 40.1 20 0.00067 30.7 3.2 45 100-144 63-112 (283)
314 4e7p_A Response regulator; DNA 40.1 1.1E+02 0.0037 22.5 10.2 111 178-297 21-141 (150)
315 2ywj_A Glutamine amidotransfer 40.1 44 0.0015 26.5 5.4 70 51-137 1-78 (186)
316 2hna_A Protein MIOC, flavodoxi 40.1 61 0.0021 24.5 6.0 63 62-136 19-91 (147)
317 1q7r_A Predicted amidotransfer 40.0 46 0.0016 27.4 5.6 51 48-112 21-71 (219)
318 3lft_A Uncharacterized protein 40.0 1.6E+02 0.0056 24.6 9.4 16 226-241 61-76 (295)
319 3inp_A D-ribulose-phosphate 3- 39.7 1.7E+02 0.0059 24.7 9.9 154 129-295 68-244 (246)
320 3lua_A Response regulator rece 39.7 1E+02 0.0036 22.2 8.6 110 50-172 4-123 (140)
321 2pjm_A Ribose-5-phosphate isom 39.6 42 0.0014 28.3 5.2 49 226-274 19-70 (226)
322 1t5b_A Acyl carrier protein ph 39.4 36 0.0012 27.0 4.8 57 191-247 24-113 (201)
323 3hdv_A Response regulator; PSI 39.3 1E+02 0.0035 22.0 10.1 112 49-173 6-124 (136)
324 3h5i_A Response regulator/sens 39.1 31 0.0011 25.3 4.1 107 177-296 5-124 (140)
325 3l7o_A Ribose-5-phosphate isom 39.0 25 0.00084 29.7 3.7 50 226-275 17-69 (225)
326 3rpe_A MDAB, modulator of drug 38.9 21 0.00073 29.9 3.3 52 191-246 51-109 (218)
327 2ag5_A DHRS6, dehydrogenase/re 38.8 98 0.0034 25.4 7.6 33 47-79 3-36 (246)
328 3h5l_A Putative branched-chain 38.6 1.4E+02 0.0048 26.4 9.2 79 177-258 164-251 (419)
329 3lcm_A SMU.1420, putative oxid 38.6 15 0.00051 29.9 2.2 49 198-246 28-99 (196)
330 3q2o_A Phosphoribosylaminoimid 38.6 44 0.0015 30.0 5.7 124 170-293 7-146 (389)
331 3ej6_A Catalase-3; heme, hydro 38.6 40 0.0014 33.3 5.6 89 46-144 533-646 (688)
332 3mwd_B ATP-citrate synthase; A 38.5 2.1E+02 0.0072 25.4 10.9 140 101-248 79-247 (334)
333 3c48_A Predicted glycosyltrans 38.5 1.3E+02 0.0044 26.7 8.8 43 253-297 349-392 (438)
334 2dwc_A PH0318, 433AA long hypo 38.5 53 0.0018 29.8 6.3 74 50-123 19-104 (433)
335 3sxp_A ADP-L-glycero-D-mannohe 38.3 94 0.0032 27.1 7.8 35 46-80 6-43 (362)
336 3ib6_A Uncharacterized protein 38.2 76 0.0026 24.9 6.5 94 57-159 34-143 (189)
337 3kto_A Response regulator rece 38.1 1.1E+02 0.0038 22.0 9.4 109 50-172 6-122 (136)
338 1req_B Methylmalonyl-COA mutas 37.7 61 0.0021 31.8 6.7 96 189-295 527-634 (637)
339 3ixl_A Amdase, arylmalonate de 37.7 49 0.0017 27.9 5.4 70 226-298 65-142 (240)
340 1f0k_A MURG, UDP-N-acetylgluco 37.6 51 0.0018 28.5 5.8 60 226-292 253-321 (364)
341 3i45_A Twin-arginine transloca 37.6 1.6E+02 0.0054 25.7 9.2 96 48-144 140-244 (387)
342 2vsy_A XCC0866; transferase, g 36.9 49 0.0017 31.0 5.9 110 177-297 406-523 (568)
343 3ezx_A MMCP 1, monomethylamine 36.5 1.3E+02 0.0044 24.8 7.8 92 176-273 91-198 (215)
344 3t4x_A Oxidoreductase, short c 36.4 1.2E+02 0.004 25.3 7.8 34 46-79 6-40 (267)
345 4fs3_A Enoyl-[acyl-carrier-pro 36.2 47 0.0016 27.9 5.2 33 164-199 22-55 (256)
346 3lkv_A Uncharacterized conserv 36.0 44 0.0015 28.8 5.0 55 189-246 26-88 (302)
347 2f8m_A Ribose 5-phosphate isom 35.9 53 0.0018 28.0 5.3 52 224-275 24-79 (244)
348 3ia7_A CALG4; glycosysltransfe 35.8 2.2E+02 0.0074 24.7 20.3 67 225-297 295-367 (402)
349 3snk_A Response regulator CHEY 35.8 1.2E+02 0.0041 21.7 9.1 107 178-296 15-133 (135)
350 4g65_A TRK system potassium up 35.7 2E+02 0.0067 26.6 9.8 128 162-295 220-366 (461)
351 3cg0_A Response regulator rece 35.7 1.2E+02 0.0041 21.7 9.6 108 177-296 9-128 (140)
352 1lk5_A D-ribose-5-phosphate is 35.6 76 0.0026 26.7 6.3 51 225-275 18-72 (229)
353 2qr3_A Two-component system re 35.4 1.2E+02 0.0041 21.6 10.0 111 49-173 2-123 (140)
354 2ark_A Flavodoxin; FMN, struct 35.3 53 0.0018 26.0 5.1 49 191-248 24-80 (188)
355 3cnb_A DNA-binding response re 35.1 1.2E+02 0.0042 21.6 13.7 111 177-298 8-132 (143)
356 3nnk_A Ureidoglycine-glyoxylat 35.0 31 0.0011 30.6 4.0 61 49-110 87-147 (411)
357 2v25_A Major cell-binding fact 35.0 75 0.0026 25.5 6.2 59 46-110 144-202 (259)
358 2dr1_A PH1308 protein, 386AA l 34.8 1.4E+02 0.0048 25.8 8.3 31 177-207 95-125 (386)
359 1uj6_A Ribose 5-phosphate isom 34.7 85 0.0029 26.3 6.4 50 226-275 21-74 (227)
360 2yv1_A Succinyl-COA ligase [AD 34.6 2.2E+02 0.0077 24.5 13.4 175 51-236 14-214 (294)
361 3ej6_A Catalase-3; heme, hydro 34.5 1.5E+02 0.005 29.3 8.8 114 175-299 535-676 (688)
362 2bkw_A Alanine-glyoxylate amin 34.5 40 0.0014 29.4 4.6 75 49-123 85-166 (385)
363 3m3p_A Glutamine amido transfe 34.4 49 0.0017 28.1 4.9 53 177-236 3-57 (250)
364 3ksx_A Nitrate transport prote 34.4 67 0.0023 27.6 6.0 66 46-115 127-192 (324)
365 3tem_A Ribosyldihydronicotinam 34.3 24 0.00083 29.5 2.9 35 50-84 1-43 (228)
366 3g85_A Transcriptional regulat 34.3 81 0.0028 26.2 6.4 70 63-134 147-224 (289)
367 1qkk_A DCTD, C4-dicarboxylate 34.1 1.4E+02 0.0047 21.9 12.6 107 177-295 3-120 (155)
368 3ix1_A N-formyl-4-amino-5-amin 34.1 37 0.0012 28.9 4.2 63 45-112 101-165 (302)
369 3hhe_A Ribose-5-phosphate isom 34.1 35 0.0012 29.4 3.9 50 226-275 40-91 (255)
370 3k5i_A Phosphoribosyl-aminoimi 34.1 1.4E+02 0.0048 26.9 8.4 112 176-293 23-159 (403)
371 1vjo_A Alanine--glyoxylate ami 34.0 1.2E+02 0.004 26.5 7.7 15 255-269 230-244 (393)
372 1m0s_A Ribose-5-phosphate isom 33.9 73 0.0025 26.6 5.8 50 225-275 18-68 (219)
373 3orq_A N5-carboxyaminoimidazol 33.8 72 0.0025 28.5 6.3 117 176-292 11-143 (377)
374 1k68_A Phytochrome response re 33.6 1.3E+02 0.0043 21.3 12.7 111 177-296 2-131 (140)
375 3hn0_A Nitrate transport prote 33.6 67 0.0023 27.3 5.8 62 48-115 94-157 (283)
376 1d4a_A DT-diaphorase, quinone 33.5 25 0.00085 30.3 2.9 57 191-247 24-120 (273)
377 3oig_A Enoyl-[acyl-carrier-pro 33.5 52 0.0018 27.5 5.0 84 47-134 4-96 (266)
378 1mio_A Nitrogenase molybdenum 33.4 54 0.0019 31.3 5.5 142 60-210 219-368 (533)
379 3u7q_B Nitrogenase molybdenum- 33.3 77 0.0026 30.1 6.6 135 63-208 238-395 (523)
380 1lnq_A MTHK channels, potassiu 33.3 58 0.002 28.5 5.4 54 225-279 175-232 (336)
381 1sb8_A WBPP; epimerase, 4-epim 33.3 92 0.0032 27.0 6.8 33 47-79 24-57 (352)
382 2h1q_A Hypothetical protein; Z 33.3 86 0.0029 27.1 6.3 110 176-292 140-253 (270)
383 3dhn_A NAD-dependent epimerase 33.0 1.8E+02 0.0062 23.0 9.7 82 50-135 4-112 (227)
384 1k68_A Phytochrome response re 33.0 1.3E+02 0.0044 21.3 9.2 111 50-171 2-126 (140)
385 3qsl_A Putative exported prote 32.9 69 0.0024 27.4 5.9 67 45-114 133-200 (346)
386 3td9_A Branched chain amino ac 32.9 1.3E+02 0.0046 25.8 7.9 82 48-132 147-235 (366)
387 1e5d_A Rubredoxin\:oxygen oxid 32.8 97 0.0033 27.5 7.0 80 50-135 252-344 (402)
388 2hqr_A Putative transcriptiona 32.8 1.8E+02 0.0062 22.9 10.1 109 52-174 2-113 (223)
389 3ph3_A Ribose-5-phosphate isom 32.6 1.7E+02 0.0057 23.4 7.4 124 41-172 11-141 (169)
390 3gvc_A Oxidoreductase, probabl 32.5 45 0.0016 28.4 4.5 82 46-134 25-112 (277)
391 3m6m_D Sensory/regulatory prot 32.3 1.5E+02 0.005 21.6 13.1 109 177-296 14-136 (143)
392 3u7q_A Nitrogenase molybdenum- 32.3 3.2E+02 0.011 25.5 15.1 214 60-294 233-464 (492)
393 3l4e_A Uncharacterized peptida 32.1 66 0.0022 26.4 5.2 69 176-250 26-101 (206)
394 3sx2_A Putative 3-ketoacyl-(ac 32.1 49 0.0017 27.9 4.6 135 45-187 8-160 (278)
395 2gk3_A Putative cytoplasmic pr 31.9 84 0.0029 26.6 6.1 46 186-235 39-85 (256)
396 1oi4_A Hypothetical protein YH 31.9 1.9E+02 0.0065 22.9 9.3 98 44-144 17-134 (193)
397 4e7p_A Response regulator; DNA 31.7 1.5E+02 0.0051 21.6 10.0 116 46-173 16-137 (150)
398 2vpq_A Acetyl-COA carboxylase; 31.7 2E+02 0.0068 26.0 9.1 29 51-79 2-30 (451)
399 3nbm_A PTS system, lactose-spe 31.5 1.3E+02 0.0043 22.0 6.2 78 177-264 6-89 (108)
400 4b8w_A GDP-L-fucose synthase; 31.5 76 0.0026 26.6 5.8 64 47-110 3-70 (319)
401 3hcw_A Maltose operon transcri 31.4 2.3E+02 0.0077 23.6 9.8 61 137-206 34-97 (295)
402 1lnq_A MTHK channels, potassiu 31.3 1.6E+02 0.0056 25.5 8.1 111 50-169 115-242 (336)
403 4dad_A Putative pilus assembly 31.3 1.5E+02 0.0051 21.4 9.6 115 45-172 15-137 (146)
404 3uw1_A Ribose-5-phosphate isom 31.2 77 0.0026 26.9 5.5 46 228-274 33-79 (239)
405 3lop_A Substrate binding perip 31.2 1.4E+02 0.0046 25.8 7.6 94 49-144 140-240 (364)
406 2ch1_A 3-hydroxykynurenine tra 31.2 1.4E+02 0.0048 26.0 7.7 15 255-269 214-228 (396)
407 3ek2_A Enoyl-(acyl-carrier-pro 31.0 71 0.0024 26.5 5.5 28 176-203 13-43 (271)
408 1f4p_A Flavodoxin; electron tr 30.9 44 0.0015 25.1 3.7 62 64-135 20-92 (147)
409 1c7n_A Cystalysin; transferase 30.8 1.9E+02 0.0063 25.3 8.5 74 49-124 112-197 (399)
410 3o74_A Fructose transport syst 30.7 1.8E+02 0.0063 23.5 8.1 62 137-206 24-88 (272)
411 3v2g_A 3-oxoacyl-[acyl-carrier 30.7 48 0.0016 28.1 4.3 102 26-134 11-118 (271)
412 1ka9_H Imidazole glycerol phos 30.7 1E+02 0.0035 24.7 6.2 48 51-112 3-51 (200)
413 1vm6_A DHPR, dihydrodipicolina 30.7 1.6E+02 0.0053 24.8 7.3 104 178-294 13-128 (228)
414 3tnl_A Shikimate dehydrogenase 30.6 88 0.003 27.6 6.1 30 46-75 150-179 (315)
415 3enk_A UDP-glucose 4-epimerase 30.5 1.2E+02 0.0041 25.9 7.1 62 49-110 4-87 (341)
416 1d2f_A MALY protein; aminotran 30.4 96 0.0033 27.1 6.5 74 49-124 110-195 (390)
417 2ch1_A 3-hydroxykynurenine tra 30.3 39 0.0013 29.8 3.8 62 49-111 92-153 (396)
418 3p2o_A Bifunctional protein fo 30.3 1.4E+02 0.005 25.9 7.3 146 65-236 54-212 (285)
419 3hn0_A Nitrate transport prote 30.2 59 0.002 27.7 4.8 63 176-244 95-160 (283)
420 4h15_A Short chain alcohol deh 30.1 52 0.0018 28.0 4.4 68 46-123 7-75 (261)
421 3u7r_A NADPH-dependent FMN red 30.1 86 0.0029 25.3 5.5 26 222-247 62-94 (190)
422 4hs4_A Chromate reductase; tri 29.9 56 0.0019 26.5 4.4 84 50-134 6-116 (199)
423 2dr1_A PH1308 protein, 386AA l 29.9 57 0.002 28.4 4.8 74 49-123 94-175 (386)
424 2xok_G ATP synthase subunit ga 29.8 45 0.0015 29.6 4.0 41 102-144 105-155 (311)
425 1o5i_A 3-oxoacyl-(acyl carrier 29.8 56 0.0019 27.1 4.5 35 45-79 14-49 (249)
426 3l3e_A DNA topoisomerase 2-bin 29.7 41 0.0014 24.3 3.2 34 44-77 12-46 (107)
427 4iin_A 3-ketoacyl-acyl carrier 29.7 54 0.0019 27.6 4.5 86 46-134 25-116 (271)
428 3he8_A Ribose-5-phosphate isom 29.6 2E+02 0.0069 22.4 9.2 101 189-294 15-123 (149)
429 1t2a_A GDP-mannose 4,6 dehydra 29.4 1.1E+02 0.0036 26.9 6.6 39 41-79 12-54 (375)
430 2nm0_A Probable 3-oxacyl-(acyl 29.3 53 0.0018 27.5 4.3 82 41-135 12-97 (253)
431 3un6_A Hypothetical protein sa 29.2 81 0.0028 27.4 5.7 64 46-113 149-214 (341)
432 2xdq_A Light-independent proto 29.2 1.1E+02 0.0038 28.2 6.8 33 46-78 313-345 (460)
433 4g65_A TRK system potassium up 29.1 3.1E+02 0.011 25.3 9.9 220 49-274 2-260 (461)
434 3kgw_A Alanine-glyoxylate amin 29.1 44 0.0015 29.2 3.9 62 49-111 97-158 (393)
435 2jgn_A DBX, DDX3, ATP-dependen 29.1 84 0.0029 24.8 5.3 41 163-203 33-73 (185)
436 3iwt_A 178AA long hypothetical 28.9 39 0.0013 26.9 3.2 48 62-113 42-93 (178)
437 2huf_A Alanine glyoxylate amin 28.9 45 0.0015 29.3 3.9 62 49-111 93-154 (393)
438 1vjo_A Alanine--glyoxylate ami 28.6 44 0.0015 29.4 3.8 62 49-111 108-169 (393)
439 2pn1_A Carbamoylphosphate synt 28.6 1.8E+02 0.0062 24.8 7.9 68 48-116 2-87 (331)
440 3imf_A Short chain dehydrogena 28.6 56 0.0019 27.2 4.3 85 46-134 2-92 (257)
441 4gmk_A Ribose-5-phosphate isom 28.5 65 0.0022 27.2 4.6 50 226-275 20-72 (228)
442 3ly1_A Putative histidinol-pho 28.4 91 0.0031 26.8 5.9 61 49-112 91-152 (354)
443 3k31_A Enoyl-(acyl-carrier-pro 28.3 60 0.0021 27.8 4.6 86 46-135 26-118 (296)
444 4ggi_A UDP-2,3-diacylglucosami 28.2 88 0.003 27.1 5.6 41 253-293 226-270 (283)
445 3rqi_A Response regulator prot 28.1 2E+02 0.0069 22.0 9.7 112 47-172 4-121 (184)
446 3qk7_A Transcriptional regulat 28.1 76 0.0026 26.7 5.2 9 227-235 65-73 (294)
447 3gpi_A NAD-dependent epimerase 28.1 45 0.0015 28.1 3.7 62 49-111 2-73 (286)
448 3gem_A Short chain dehydrogena 28.0 50 0.0017 27.8 3.9 82 46-134 23-108 (260)
449 3zrp_A Serine-pyruvate aminotr 27.9 48 0.0016 28.8 3.9 62 49-111 76-137 (384)
450 2ohh_A Type A flavoprotein FPR 27.9 75 0.0026 28.3 5.3 66 63-134 275-350 (404)
451 2ayx_A Sensor kinase protein R 27.9 2.5E+02 0.0086 23.0 11.1 109 176-296 128-247 (254)
452 3vtz_A Glucose 1-dehydrogenase 27.9 60 0.002 27.4 4.4 34 46-79 10-44 (269)
453 2lnd_A De novo designed protei 27.8 1.6E+02 0.0053 20.6 7.2 70 227-298 28-103 (112)
454 2z61_A Probable aspartate amin 27.8 1E+02 0.0034 26.8 6.1 53 49-111 112-164 (370)
455 1a4i_A Methylenetetrahydrofola 27.8 1.8E+02 0.006 25.6 7.4 160 53-237 40-218 (301)
456 1iuk_A Hypothetical protein TT 27.8 92 0.0031 23.6 5.1 91 178-274 14-120 (140)
457 3grk_A Enoyl-(acyl-carrier-pro 27.7 75 0.0026 27.2 5.1 86 46-135 27-119 (293)
458 1wdi_A Hypothetical protein TT 27.7 3.3E+02 0.011 24.3 9.9 74 189-270 190-267 (345)
459 1cyd_A Carbonyl reductase; sho 27.6 65 0.0022 26.2 4.5 34 46-79 3-37 (244)
460 2huf_A Alanine glyoxylate amin 27.6 1.8E+02 0.0061 25.2 7.8 16 255-270 215-230 (393)
461 3l07_A Bifunctional protein fo 27.4 2E+02 0.0068 25.0 7.7 147 65-236 55-213 (285)
462 3l7n_A Putative uncharacterize 27.4 74 0.0025 26.4 4.8 50 179-235 2-53 (236)
463 3gdg_A Probable NADP-dependent 27.3 56 0.0019 27.2 4.1 85 46-134 16-110 (267)
464 3nrc_A Enoyl-[acyl-carrier-pro 27.3 74 0.0025 26.9 4.9 84 46-134 22-112 (280)
465 2pjk_A 178AA long hypothetical 27.2 93 0.0032 24.8 5.2 48 62-113 42-93 (178)
466 3get_A Histidinol-phosphate am 27.1 39 0.0013 29.4 3.2 60 49-112 105-164 (365)
467 1wdi_A Hypothetical protein TT 27.1 2.8E+02 0.0096 24.8 8.6 74 62-144 190-267 (345)
468 3aek_B Light-independent proto 27.1 1E+02 0.0035 29.2 6.2 104 28-144 262-366 (525)
469 2nv0_A Glutamine amidotransfer 27.0 82 0.0028 25.1 4.9 73 51-137 2-82 (196)
470 3rot_A ABC sugar transporter, 26.9 2.7E+02 0.0092 23.1 12.5 63 137-207 25-93 (297)
471 3u62_A Shikimate dehydrogenase 26.9 44 0.0015 28.4 3.4 122 162-294 94-233 (253)
472 1o13_A Probable NIFB protein; 26.9 58 0.002 24.8 3.7 33 258-291 84-116 (136)
473 3nkl_A UDP-D-quinovosamine 4-d 26.9 1.9E+02 0.0064 21.2 7.5 23 177-199 4-26 (141)
474 3lec_A NADB-rossmann superfami 26.8 1.4E+02 0.0048 24.9 6.5 30 178-207 118-147 (230)
475 1zk4_A R-specific alcohol dehy 26.8 66 0.0023 26.3 4.5 85 46-134 2-91 (251)
476 1rpn_A GDP-mannose 4,6-dehydra 26.8 1.3E+02 0.0043 25.7 6.5 33 47-79 11-44 (335)
477 1fmc_A 7 alpha-hydroxysteroid 26.8 62 0.0021 26.5 4.3 34 46-79 7-41 (255)
478 3cz5_A Two-component response 26.8 1.9E+02 0.0064 21.1 9.4 123 47-180 2-129 (153)
479 3evz_A Methyltransferase; NYSG 26.7 55 0.0019 26.4 3.9 46 164-209 159-206 (230)
480 3ffh_A Histidinol-phosphate am 26.6 74 0.0025 27.6 4.9 59 49-111 107-165 (363)
481 3i1j_A Oxidoreductase, short c 26.6 81 0.0028 25.8 4.9 85 46-134 10-103 (247)
482 3f2v_A General stress protein 26.5 29 0.00098 28.3 2.0 58 62-120 19-84 (192)
483 3c3m_A Response regulator rece 26.5 1.8E+02 0.0061 20.8 9.6 109 178-296 4-123 (138)
484 1byk_A Protein (trehalose oper 26.5 92 0.0032 25.3 5.3 70 63-138 136-209 (255)
485 1o2d_A Alcohol dehydrogenase, 26.4 1.5E+02 0.005 26.5 7.0 62 177-241 40-113 (371)
486 2pke_A Haloacid delahogenase-l 26.4 90 0.0031 25.3 5.2 52 101-158 153-207 (251)
487 2yx6_A Hypothetical protein PH 26.4 55 0.0019 24.1 3.5 33 258-291 71-103 (121)
488 1srr_A SPO0F, sporulation resp 26.3 1.6E+02 0.0056 20.4 10.8 106 178-295 4-120 (124)
489 3isl_A Purine catabolism prote 26.3 47 0.0016 29.4 3.6 74 49-123 85-165 (416)
490 3flh_A Uncharacterized protein 26.3 1.3E+02 0.0045 21.9 5.7 38 164-202 59-99 (124)
491 1eo1_A Hypothetical protein MT 26.2 63 0.0021 23.9 3.8 33 258-291 73-105 (124)
492 1zmt_A Haloalcohol dehalogenas 26.2 93 0.0032 25.7 5.3 79 51-135 2-82 (254)
493 4b4o_A Epimerase family protei 26.2 57 0.0019 27.7 4.0 29 51-79 1-30 (298)
494 3kax_A Aminotransferase, class 26.1 1.6E+02 0.0056 25.3 7.2 72 49-123 105-188 (383)
495 3npg_A Uncharacterized DUF364 26.1 1.5E+02 0.0051 25.2 6.6 113 49-172 115-232 (249)
496 4e3z_A Putative oxidoreductase 26.1 1.7E+02 0.006 24.2 7.1 84 48-134 24-113 (272)
497 2rhc_B Actinorhodin polyketide 25.9 86 0.003 26.4 5.1 84 47-134 19-108 (277)
498 2wfb_A Putative uncharacterize 25.8 64 0.0022 23.7 3.7 32 259-291 76-108 (120)
499 3ipc_A ABC transporter, substr 25.8 1.5E+02 0.0052 25.3 6.9 82 49-132 137-224 (356)
500 3nzo_A UDP-N-acetylglucosamine 25.8 1.2E+02 0.0043 27.1 6.4 33 47-79 32-66 (399)
No 1
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=100.00 E-value=7.7e-48 Score=343.54 Aligned_cols=241 Identities=17% Similarity=0.171 Sum_probs=212.4
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEeChHHHHHHHHHHHHcC
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIITSPEAGSVFLEAWKEAG 124 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFTS~~av~~~~~~l~~~~ 124 (300)
.||.||+||+|||.++++++.+.|+++|++++.+|+|++++.++...+.+.+ .+..||||||||+|||++|++.+.+.+
T Consensus 2 ~~L~g~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~ 81 (254)
T 4es6_A 2 SHMSGWRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYW 81 (254)
T ss_dssp ----CCEEEECSCHHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEeCChHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999999999999999988766676666 568899999999999999999988765
Q ss_pred CC--CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc--c-CCCCCCEEEEEcCCCChhHHHHHHHhC
Q 022234 125 TP--NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 199 (300)
Q Consensus 125 ~~--~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~--~-~~~~~~~vL~~rg~~~~~~L~~~L~~~ 199 (300)
.+ +.+++|||++|+++|+++ |+.++++|+.+++++|++.+. + ....+++||++||+.+++.|.+.|+++
T Consensus 82 ~~~~~~~i~aVG~~Ta~~L~~~------G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~ 155 (254)
T 4es6_A 82 PQPPQQTWCSVGAATAAILEAY------GLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQ 155 (254)
T ss_dssp SSCCSCEEEESSHHHHHHHHHH------TCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHC
Confidence 43 589999999999999999 999999998899999999886 3 234689999999999999999999999
Q ss_pred CCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhccc--CCCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 200 GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 200 G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~--~~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
|++|+++++|++++.+.....+.+.+ +.+|+|+||||+++++|++.++.. .+.+.+++||||+|+++++++|++++
T Consensus 156 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~l~~~~~~aIG~~Ta~~l~~~G~~~~ 235 (254)
T 4es6_A 156 GVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQNLYQLAAADWPEIGRLPLFVPSPRVAEMARELGAQRV 235 (254)
T ss_dssp TCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHHHHHHHHGGGHHHHTTSCEEESSHHHHHHHHHTTCSSE
T ss_pred CCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHhhHHHHHHhCCeEEEECHHHHHHHHHcCCCce
Confidence 99999999999998887655444433 589999999999999999998754 23478999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHH
Q 022234 276 YYPTHPGLEGWVDSILE 292 (300)
Q Consensus 276 ~v~~~p~~~~l~~ai~~ 292 (300)
+++++|+.++|+++|.+
T Consensus 236 ~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 236 IDCRGASAPALLAALTS 252 (254)
T ss_dssp EECSSSSHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHh
Confidence 99999999999999976
No 2
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=100.00 E-value=3.7e-48 Score=348.66 Aligned_cols=244 Identities=19% Similarity=0.193 Sum_probs=207.7
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEeChHHHHHHHHHHHHcC
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIITSPEAGSVFLEAWKEAG 124 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFTS~~av~~~~~~l~~~~ 124 (300)
-++.|++||||||.++++++++.|+++|++++.+|++++++.++...+.+.+ .+..||||||||+|||++|++.+.+.+
T Consensus 10 ~~~~g~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~ 89 (269)
T 3re1_A 10 MDMSAWRLLLTRPAEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVW 89 (269)
T ss_dssp ---CCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHC
T ss_pred cccCCCEEEEeCChHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 7899999999999999999999999999999999999999988765666666 568899999999999999999998765
Q ss_pred CC--CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc--c-CCCCCCEEEEEcCCCChhHHHHHHHhC
Q 022234 125 TP--NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 199 (300)
Q Consensus 125 ~~--~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~--~-~~~~~~~vL~~rg~~~~~~L~~~L~~~ 199 (300)
.+ +.+++|||++|+++|+++ |+.+++.|..+++++|++.+. + ....+++||++||+.+++.|.+.|+++
T Consensus 90 ~~~~~~~i~aVG~~Ta~aL~~~------G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~ 163 (269)
T 3re1_A 90 PQPPMQPWFSVGSATGQILLDY------GLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRER 163 (269)
T ss_dssp SSCCCSCEEESSHHHHHHHHHT------TCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHHC
Confidence 43 589999999999999999 999999888899999998876 3 234679999999999999999999999
Q ss_pred CCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhccc--CCCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 200 GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 200 G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~--~~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
|++|+++++|++++.+.....+.+.+ +.+|+|+|||++++++|++.+++. .+.+.+++||||+|+++++++|++++
T Consensus 164 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~l~~~~~~aIG~~Ta~~l~~~G~~~~ 243 (269)
T 3re1_A 164 GVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQGFEHLLQLAGDSWPDLAGLPLFVPSPRVASLAQAAGARNV 243 (269)
T ss_dssp TCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHHHHTTTHHHHGGGHHHHTTSCEEESSHHHHHHHHHHTCSSE
T ss_pred CCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHHHHHHHHHHhhHHHHHHhCCeEEEECHHHHHHHHHCCCCce
Confidence 99999999999998876544333333 589999999999999999988753 23478999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHH
Q 022234 276 YYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 276 ~v~~~p~~~~l~~ai~~~~~ 295 (300)
+++++|+.++|+++|.+++.
T Consensus 244 ~va~~~t~~~l~~al~~~~~ 263 (269)
T 3re1_A 244 IDCRGASAAALLAALRDQPQ 263 (269)
T ss_dssp EECSSSSHHHHHHHHHHSCC
T ss_pred EECCCCCHHHHHHHHHHHhc
Confidence 99999999999999998764
No 3
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=100.00 E-value=1.9e-47 Score=346.85 Aligned_cols=248 Identities=18% Similarity=0.134 Sum_probs=205.0
Q ss_pred CCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hc-CCccEE
Q 022234 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-ND-TIFDWI 105 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~-~~~d~i 105 (300)
.+++++|||. +||.|++||+||+.+ ++.+.+.|+++|++++.+|+|++++. +.+.+.+.+ .+ ..||||
T Consensus 19 ~~~~~~w~e~--------~pL~G~~VlvtR~~~-~~~l~~~L~~~G~~v~~~P~i~i~~~-~~~~l~~~l~~l~~~~d~l 88 (286)
T 3d8t_A 19 DSTENLYFQG--------IDPFTMRIAYAGLRR-KEEFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRELAQGVDLF 88 (286)
T ss_dssp ----------------------CCEEEECCSSC-HHHHHHHHHHHTCEEEECCCEEEEEE-ECTTHHHHHHHHTTCCSEE
T ss_pred cCccCccccC--------CCCCCCEEEEeCCCc-hHHHHHHHHHCCCeEEEeeeEEEecC-CHHHHHHHHHhhccCCCEE
Confidence 4578899999 999999999999997 99999999999999999999999987 555566555 34 479999
Q ss_pred EEeChHHHHHHHHHHHHcCCC------CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCC-
Q 022234 106 IITSPEAGSVFLEAWKEAGTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC- 178 (300)
Q Consensus 106 vFTS~~av~~~~~~l~~~~~~------~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~- 178 (300)
||||+|+|++|++.+.+.+.+ +.+++|||++|+++|+++ |+.++++| .+++++|++.|.+ |+
T Consensus 89 ifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p-~~~~e~L~~~l~~----g~~ 157 (286)
T 3d8t_A 89 LATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----GRG 157 (286)
T ss_dssp EECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSGGGGGGGCCC----CCS
T ss_pred EEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEECHHHHHHHHHc------CCCccccc-cccHHHHHHHHHc----CCc
Confidence 999999999999998876654 689999999999999999 99999999 8999999998865 68
Q ss_pred EEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhcccC-----C
Q 022234 179 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE-----Q 251 (300)
Q Consensus 179 ~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~-----~ 251 (300)
+||++||+.+++.|.+.|++.|++|.++++|++++......++.+.+ +.+|+|+|||+++|++|++.+++.+ +
T Consensus 158 ~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~~~v~~~~~~~~~~~~~~~~l 237 (286)
T 3d8t_A 158 VAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAAIQVEFLFEGAKDPKALREAL 237 (286)
T ss_dssp EEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHHCSCHHHHHHHH
T ss_pred eEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECHHHHHHHHHHHHhccchhhHh
Confidence 99999999999999999999999999999999995432223333333 5799999999999999999886521 2
Q ss_pred C-CceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 252 W-SNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 252 ~-~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
. +.+++||||+|+++++++|+++++++++|+.++|+++|.+++..
T Consensus 238 ~~~~~i~aIG~~TA~al~~~G~~~~~~a~~~~~~~L~~~l~~~~~~ 283 (286)
T 3d8t_A 238 NTRVKALAVGRVTADALREWGVKPFYVDETERLGSLLQGFKRALQK 283 (286)
T ss_dssp TTTSEEEEESHHHHHHHHHTTCCCSEEECSSCHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 4 68999999999999999999988999999999999999998754
No 4
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=100.00 E-value=4.7e-46 Score=329.24 Aligned_cols=233 Identities=19% Similarity=0.197 Sum_probs=203.3
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCce
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 129 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~ 129 (300)
||+||+|||.++++++++.|+++|++++.+|++++++.++.+.... .+..||||||||+|||++|++.+.+ .+.+.+
T Consensus 1 G~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~--~l~~~d~viftS~~aV~~~~~~l~~-~l~~~~ 77 (240)
T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLD--ELSRADILIFISTSAVSFATPWLKD-QWPKAT 77 (240)
T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHH--HHTTCSEEEECSHHHHHHHHHHHTT-CCCSSE
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHH--HhcCCCEEEEECHHHHHHHHHHHHh-hCcCCe
Confidence 8999999999999999999999999999999999999875433222 3578999999999999999998763 345799
Q ss_pred EEEEccchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe
Q 022234 130 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 208 (300)
Q Consensus 130 i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 208 (300)
++|||++|+++|+++ |+.++++|+.+ ++++|++.+......|++||++||+.+++.|.+.|+++|++|+++++
T Consensus 78 ~~aVG~~Ta~~L~~~------G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~ 151 (240)
T 3mw8_A 78 YYAVGDATADALALQ------GITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEV 151 (240)
T ss_dssp EEESSHHHHHHHHHT------TCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEE
T ss_pred EEEECHHHHHHHHHc------CCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 999999999999999 99999999987 99999987765455789999999999999999999999999999999
Q ss_pred eeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhcccC---CCCceEEEeCHHHHHHHHHcCCCeEEecCCCCH
Q 022234 209 YTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNVYYPTHPGL 283 (300)
Q Consensus 209 Y~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~---~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~ 283 (300)
|++++.+.....+.+.+ +++|+|+||||+++++|++.++... +.+.+++||||+|+++++++|+++++++++|+.
T Consensus 152 Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~~l~~~~~~aiG~~ta~~l~~~G~~~~~va~~p~~ 231 (240)
T 3mw8_A 152 YQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLENLINLVPKDSFAWLRDCHIIVPSARVETQARKKGLRRVTNAGAANQ 231 (240)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHHHHHHHSCGGGHHHHHHSEEEESSHHHHHHHHHTTCCCEEECSSSSH
T ss_pred EEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHcchHHHHHHhCCCEEEECHHHHHHHHHcCCCceEeCCCCCH
Confidence 99999887665544433 4799999999999999999987642 236899999999999999999999899999999
Q ss_pred HHHHHHHH
Q 022234 284 EGWVDSIL 291 (300)
Q Consensus 284 ~~l~~ai~ 291 (300)
++|+++|.
T Consensus 232 ~~ll~al~ 239 (240)
T 3mw8_A 232 AAVLDALG 239 (240)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99999874
No 5
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=100.00 E-value=5.6e-46 Score=337.12 Aligned_cols=250 Identities=19% Similarity=0.231 Sum_probs=207.6
Q ss_pred cccCCCCCCCeEEEeCCC-Cch---HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEeChHHHHHH
Q 022234 42 TSASASNSNPKVVVTRER-GKN---GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIITSPEAGSVF 116 (300)
Q Consensus 42 ~~~~~~l~g~~VlitR~~-~~~---~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFTS~~av~~~ 116 (300)
+|..+++.||+|++||+. +++ +++++.|+++|++++.+|++++++.+ .+.+...+ .+..||||||||+|||++|
T Consensus 13 ~~~~~~l~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~-~~~l~~~l~~~~~~d~lifTS~naV~~~ 91 (286)
T 1jr2_A 13 SSGHIEGRHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLS-LPSFSEKLSHPEDYGGLIFTSPRAVEAA 91 (286)
T ss_dssp ---------CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECC-HHHHHHHHTCGGGCSEEEECCHHHHHHH
T ss_pred cccchhhcCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCC-HHHHHHHHhCcccccEEEEeCHHHHHHH
Confidence 567799999999999997 777 99999999999999999999999964 34555555 4578999999999999999
Q ss_pred HHHHHHcCC------------CCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEc
Q 022234 117 LEAWKEAGT------------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA 184 (300)
Q Consensus 117 ~~~l~~~~~------------~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~r 184 (300)
++.+.+.+. .+.+++|||++|+++|+++ |+.+ ++|..+++++|++.+......+++||++|
T Consensus 92 ~~~l~~~~~~~~~~~d~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~-~~p~~~~ae~L~~~l~~~~~~g~~vLi~r 164 (286)
T 1jr2_A 92 ELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKI------GLDT-EGETCGNAEKLAEYICSRESSALPLLFPC 164 (286)
T ss_dssp HHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHT------TCCC-SCCSCSSHHHHHHHHHTSCCCSSCEEEEE
T ss_pred HHHHHhccccccchhhHHHHhccCcEEEECHHHHHHHHHc------CCCc-CCCCccCHHHHHHHHHhcccCCCeEEEEC
Confidence 998876542 3689999999999999999 9998 78989999999999987655678999999
Q ss_pred CCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc---CCCCEEEEEChHHHHHHHHHhccc---CCCCceEEE
Q 022234 185 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDT---EQWSNSVAC 258 (300)
Q Consensus 185 g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l---~~~d~IvftS~s~v~~~~~~~~~~---~~~~~~vv~ 258 (300)
|+.+++.|.+.|++.|+.|.++++|++++.+.....+.+.+ +.+|+|+||||++|++|++.+++. .+.+.+++|
T Consensus 165 g~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~~~~l~~~~i~a 244 (286)
T 1jr2_A 165 GNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAA 244 (286)
T ss_dssp SCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEE
T ss_pred ChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhccccccCCEEEE
Confidence 99999999999999999999999999998765433332222 579999999999999999987651 234688999
Q ss_pred eCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccCC
Q 022234 259 IGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 299 (300)
Q Consensus 259 IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~~ 299 (300)
|||+|+++++++|+++++++++|+.++|+++|.+++..+++
T Consensus 245 IG~~Ta~~l~~~G~~~~~va~~~~~~~ll~al~~~~~~~~~ 285 (286)
T 1jr2_A 245 IGPTTARALAAQGLPVSCTAESPTPQALATGIRKALQPHGC 285 (286)
T ss_dssp SSHHHHHHHHHTTCCCSEECSSSSHHHHHHHHHHHTC----
T ss_pred ECHHHHHHHHHcCCCceEecCCCCHHHHHHHHHHHHhhcCC
Confidence 99999999999999998999999999999999999887764
No 6
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=100.00 E-value=2.4e-45 Score=328.34 Aligned_cols=238 Identities=18% Similarity=0.150 Sum_probs=205.0
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hc-CCccEEEEeChHHHHHHHHHHHHc
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-ND-TIFDWIIITSPEAGSVFLEAWKEA 123 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~-~~~d~ivFTS~~av~~~~~~l~~~ 123 (300)
+||.|++||+||+.+ ++.+.+.|+++|++++.+|++++++. +.+.+...+ ++ +.||||||||+|+|++|++.+.+.
T Consensus 4 ~~l~g~~vlvtr~~~-~~~l~~~L~~~G~~~~~~P~i~i~~~-~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~ 81 (261)
T 1wcw_A 4 LEEDAVRVAYAGLRR-KEAFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKAL 81 (261)
T ss_dssp ----CCEEEECCSTT-HHHHHHHHHHTTCEEEECCCEEEEEC-CGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCc-hHHHHHHHHHCCCcEEEeccEEEecC-CHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHh
Confidence 899999999999997 99999999999999999999999998 666666655 34 579999999999999999998876
Q ss_pred CCC------CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCC-EEEEEcCCCChhHHHHHH
Q 022234 124 GTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC-TVLYPASAKASNEIEEGL 196 (300)
Q Consensus 124 ~~~------~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~-~vL~~rg~~~~~~L~~~L 196 (300)
+.+ +.+++|||++|+++|+++ |+.++++| .+++++|++.|.+ |+ +||++||+.+++.|.+.|
T Consensus 82 ~~~~~~~l~~~~i~avG~~Ta~~l~~~------G~~~~~~p-~~~~e~L~~~l~~----g~~~vL~~r~~~~~~~L~~~L 150 (261)
T 1wcw_A 82 GLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----GRGVAALQLYGKPLPLLENAL 150 (261)
T ss_dssp TCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSHHHHGGGSCC----CCEEEEEECCSSCCHHHHHHH
T ss_pred CchHHHHhcCCeEEEECHHHHHHHHHc------CCCCCccc-CccHHHHHHHHHc----CCceEEEEccCcccHHHHHHH
Confidence 543 589999999999999999 99999999 8999999998865 68 999999999999999999
Q ss_pred HhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhcccC-----CC-CceEEEeCHHHHHHHH
Q 022234 197 SNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE-----QW-SNSVACIGETTASAAK 268 (300)
Q Consensus 197 ~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~-----~~-~~~vv~IG~~Ta~~l~ 268 (300)
+++|++|.++++|++++......++.+.+ +++|+|+|||+++|++|++.+++.+ +. +.+++||||+|+++++
T Consensus 151 ~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~~~l~~~~~~~aIG~~Ta~~l~ 230 (261)
T 1wcw_A 151 AERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALR 230 (261)
T ss_dssp HHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHHHHHHHCSCHHHHHHHHHHTSEEEEESHHHHHHHH
T ss_pred HHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECHHHHHHHHHHHhhccchhHHhhcCCEEEEECHHHHHHHH
Confidence 99999999999999995432223333333 5799999999999999999876521 23 6789999999999999
Q ss_pred HcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 269 RLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 269 ~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
++|+++++++++|+.++|+++|.+++.+
T Consensus 231 ~~G~~~~~~a~~~~~~~l~~~l~~~~~~ 258 (261)
T 1wcw_A 231 EWGVKPFYVDETERLGSLLQGFKRALQK 258 (261)
T ss_dssp HTTCCCSEEECSCCHHHHHHHHHHHHHH
T ss_pred HcCCCCceecCCCCHHHHHHHHHHHhhh
Confidence 9999988899999999999999998753
No 7
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=100.00 E-value=1.2e-37 Score=273.86 Aligned_cols=202 Identities=22% Similarity=0.244 Sum_probs=167.6
Q ss_pred CEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcC----CCCceEEEEccchHHHHHHHhhccCC
Q 022234 75 DCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAG----TPNVRIGVVGAGTASIFEEVIQSSKC 150 (300)
Q Consensus 75 ~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~----~~~~~i~aVG~~Ta~~L~~~~~~~~~ 150 (300)
.++.+|+++|++.+.. .++..||||||||+|||++|++.+.+.+ +.+.+++|||++|+++|+++
T Consensus 17 ~~~~~Pll~I~~~~~~------~~l~~~d~lifTS~naV~~~~~~l~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------ 84 (229)
T 3p9z_A 17 PYKTLILNEFCYYPLE------LDPTPFNALIFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSEPTAKTLQDH------ 84 (229)
T ss_dssp TSEEECCEEEEECCCC------SCCTTCSEEEESCHHHHHHHHHHTTTCHHHHHHHTSCEEESSHHHHHHHHHT------
T ss_pred CceeeceeeEEecccc------CCcCcCCEEEEECHHHHHHHHHHHHhccchHHHcCCcEEEECHHHHHHHHHc------
Confidence 6899999999998642 2467899999999999999998775322 24789999999999999999
Q ss_pred CccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCC
Q 022234 151 SLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSI 228 (300)
Q Consensus 151 G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~ 228 (300)
|+.++++|..+++++|++.|.+.. .|+++|++||+.+++.|.+.|+++|++|+++++|++++.+... +..+.+ +.+
T Consensus 85 G~~~~~~p~~~~~e~L~~~l~~~~-~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~~l~~~~~ 162 (229)
T 3p9z_A 85 HFKVAFMGEKAHGKEFVQEIFPLL-EKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTL-SEQNALKPKEK 162 (229)
T ss_dssp TCCBCCCCC---------CCHHHH-TTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCH-HHHHHHSCCTT
T ss_pred CCCeeecCCcccHHHHHHHHHhhC-CCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccH-HHHHHHhcCCC
Confidence 999999999999999999887543 5789999999999999999999999999999999999987654 333333 579
Q ss_pred CEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHH
Q 022234 229 PVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 293 (300)
Q Consensus 229 d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~ 293 (300)
|+|+||||+++++|++.++. ..+.+++||||+|+++++++|+++ .++++|+.++|++++.+.
T Consensus 163 d~v~ftS~s~v~~~~~~~~~--~~~~~~~aIG~~Ta~~l~~~G~~v-~va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 163 SILIFTAISHAKAFLHYFEF--LENYTAISIGNTTALYLQEQGIPS-YIAKKPSLEACLELALSL 224 (229)
T ss_dssp CEEEECSHHHHHHHHHHSCC--CTTCEEEESSHHHHHHHHHTTCCE-EECSSSSHHHHHHHHHHT
T ss_pred eEEEEECHHHHHHHHHHhCc--ccCCEEEEECHHHHHHHHHcCCCc-eeCCCCCHHHHHHHHHHH
Confidence 99999999999999998852 347899999999999999999996 589999999999999875
No 8
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=99.66 E-value=3e-16 Score=137.23 Aligned_cols=117 Identities=16% Similarity=0.062 Sum_probs=102.2
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCC
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPN 127 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~ 127 (300)
+.|++||++|+....+.+.+.|+++|++|..+|+|++++.++.....+.+..+.+|+|+|||+++|++|++.+. ...+
T Consensus 108 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~--~~~~ 185 (229)
T 3p9z_A 108 LEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEKSILIFTAISHAKAFLHYFE--FLEN 185 (229)
T ss_dssp HTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTTCEEEECSHHHHHHHHHHSC--CCTT
T ss_pred CCCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhcCCCeEEEEECHHHHHHHHHHhC--cccC
Confidence 46899999999999999999999999999999999999986544444455567899999999999999998763 3457
Q ss_pred ceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 128 VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 128 ~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
.+++|||+.|+++++++ |++++ +|+.++.++|++.+.+.
T Consensus 186 ~~~~aIG~~Ta~~l~~~------G~~v~-va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 186 YTAISIGNTTALYLQEQ------GIPSY-IAKKPSLEACLELALSL 224 (229)
T ss_dssp CEEEESSHHHHHHHHHT------TCCEE-ECSSSSHHHHHHHHHHT
T ss_pred CEEEEECHHHHHHHHHc------CCCce-eCCCCCHHHHHHHHHHH
Confidence 89999999999999999 99874 79999999999988764
No 9
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=99.65 E-value=2.1e-16 Score=141.39 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=106.7
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCC-chhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc--
Q 022234 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-- 123 (300)
Q Consensus 47 ~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~-~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-- 123 (300)
...|++||++|+....+.+.+.|+++|++|..+|+|++++.+. .+.+.+.+..+.+|+|+|||+++|+.|++.+.+.
T Consensus 138 ~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~ 217 (269)
T 3re1_A 138 AVPGSRVLIMRGNEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQGFEHLLQLAGDSWP 217 (269)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHHHHTTTHHHHGGGHH
T ss_pred cCCCCEEEEEccCccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHHHHHHHHHHhhHHHH
Confidence 4679999999999999999999999999999999999998753 3344444556789999999999999999987653
Q ss_pred CCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCC
Q 022234 124 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK 175 (300)
Q Consensus 124 ~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~ 175 (300)
.+.+++++|||+.|+++++++ |++++++|+.++.++|++.|.+...
T Consensus 218 ~l~~~~~~aIG~~Ta~~l~~~------G~~~~~va~~~t~~~l~~al~~~~~ 263 (269)
T 3re1_A 218 DLAGLPLFVPSPRVASLAQAA------GARNVIDCRGASAAALLAALRDQPQ 263 (269)
T ss_dssp HHTTSCEEESSHHHHHHHHHH------TCSSEEECSSSSHHHHHHHHHHSCC
T ss_pred HHhCCeEEEECHHHHHHHHHC------CCCceEECCCCCHHHHHHHHHHHhc
Confidence 235789999999999999999 9999888999999999999987653
No 10
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=99.65 E-value=4.4e-16 Score=140.49 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=104.8
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCch-hHHHhhh-cCCccEEEEeChHHHHHHHHHHHHc-
Q 022234 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEA- 123 (300)
Q Consensus 47 ~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~-~l~~~l~-~~~~d~ivFTS~~av~~~~~~l~~~- 123 (300)
...|++||++|+...++.+.+.|+++|++|..+|+|++++.++.. .+.+.+. .+.+|+|+|||+++|+.|++.+.+.
T Consensus 154 ~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~ 233 (286)
T 1jr2_A 154 ESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELS 233 (286)
T ss_dssp CCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEECChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhc
Confidence 356899999999998999999999999999999999999876533 4444443 3789999999999999999988652
Q ss_pred --CCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC
Q 022234 124 --GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 174 (300)
Q Consensus 124 --~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 174 (300)
.+.+++++|||+.|+++|+++ |+.++++|..++.++|++.|.+..
T Consensus 234 ~~~l~~~~i~aIG~~Ta~~l~~~------G~~~~~va~~~~~~~ll~al~~~~ 280 (286)
T 1jr2_A 234 GDNIDQIKFAAIGPTTARALAAQ------GLPVSCTAESPTPQALATGIRKAL 280 (286)
T ss_dssp GGGGGGSEEEESSHHHHHHHHHT------TCCCSEECSSSSHHHHHHHHHHHT
T ss_pred cccccCCEEEEECHHHHHHHHHc------CCCceEecCCCCHHHHHHHHHHHH
Confidence 245789999999999999999 999988999999999999887654
No 11
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=99.63 E-value=7.6e-16 Score=136.50 Aligned_cols=120 Identities=15% Similarity=0.162 Sum_probs=104.9
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCC-chhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc--
Q 022234 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-- 123 (300)
Q Consensus 47 ~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~-~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-- 123 (300)
...|++||+.|+....+.+.+.|+++|++|..+++|+.++.+. .+.+.+.+..+.+|+|+|||+++|++|++.+.+.
T Consensus 130 ~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~ 209 (254)
T 4es6_A 130 RVHDPKVLIMRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQNLYQLAAADWP 209 (254)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHHHHHHHHGGGHH
T ss_pred cCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHhhHHHH
Confidence 5679999999999999999999999999999999999998763 3445555556789999999999999999987653
Q ss_pred CCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 124 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 124 ~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
.+.+++++|||+.|+++++++ |++++++++.++.++|++.|.+
T Consensus 210 ~l~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 210 EIGRLPLFVPSPRVAEMAREL------GAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp HHTTSCEEESSHHHHHHHHHT------TCSSEEECSSSSHHHHHHHHHH
T ss_pred HHhCCeEEEECHHHHHHHHHc------CCCceEECCCCCHHHHHHHHHh
Confidence 235789999999999999999 9999888999999999988854
No 12
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=99.61 E-value=6.4e-16 Score=137.35 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=99.1
Q ss_pred CC-eEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCC-chhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc----
Q 022234 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA---- 123 (300)
Q Consensus 50 g~-~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~-~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~---- 123 (300)
|+ +||++|+...++.+.+.|+++|++|..+|+|++++.++ .+.+.+.+..+.+|+|+|||+++|++|++.+.+.
T Consensus 130 g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~ 209 (261)
T 1wcw_A 130 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKALR 209 (261)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHHHHHHHCSCHHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECHHHHHHHHHHHhhccchh
Confidence 89 99999999999999999999999999999999986432 1233333445789999999999999999876432
Q ss_pred -CCC-CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 124 -GTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 124 -~~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
.+. +.+++|||+.|+++++++ |++++++|+.++.++|++.|.+.
T Consensus 210 ~~l~~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~~l~~~ 255 (261)
T 1wcw_A 210 EALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 255 (261)
T ss_dssp HHHHHTSEEEEESHHHHHHHHHT------TCCCSEEECSCCHHHHHHHHHHH
T ss_pred HHhhcCCEEEEECHHHHHHHHHc------CCCCceecCCCCHHHHHHHHHHH
Confidence 123 689999999999999999 99998889899999999888653
No 13
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=99.60 E-value=1.4e-15 Score=137.33 Aligned_cols=118 Identities=17% Similarity=0.112 Sum_probs=99.6
Q ss_pred CC-eEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCC-chhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc----
Q 022234 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA---- 123 (300)
Q Consensus 50 g~-~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~-~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~---- 123 (300)
|+ +||++|+...++.+.+.|+++|++|..+|+|++++..+ .+.+.+.+..+.+|+|+|||+++|+.|++.+.+.
T Consensus 155 g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~~~v~~~~~~~~~~~~~~ 234 (286)
T 3d8t_A 155 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAAIQVEFLFEGAKDPKALR 234 (286)
T ss_dssp CCSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHHCSCHHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECHHHHHHHHHHHHhccchh
Confidence 88 99999999999999999999999999999999986432 1233334455789999999999999999876432
Q ss_pred -CCC-CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 124 -GTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 124 -~~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
.+. +++++|||+.|+++++++ |+.++++|+.++.++|++.|.+.
T Consensus 235 ~~l~~~~~i~aIG~~TA~al~~~------G~~~~~~a~~~~~~~L~~~l~~~ 280 (286)
T 3d8t_A 235 EALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 280 (286)
T ss_dssp HHHTTTSEEEEESHHHHHHHHHT------TCCCSEEECSSCHHHHHHHHHHH
T ss_pred hHhhcCCEEEEECHHHHHHHHHc------CCCceEEeCCCCHHHHHHHHHHH
Confidence 124 689999999999999999 99998889999999999888653
No 14
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=99.59 E-value=1.4e-15 Score=133.72 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=102.7
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCC-chhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcC
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAG 124 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~-~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~ 124 (300)
..+.|++||+.|.....+.+.+.|+++|++|..+++|+..+.+. .+.+.+.+..+.+|+|+|||+++|++|++.+.+..
T Consensus 116 ~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~ 195 (240)
T 3mw8_A 116 EQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLENLINLVPKDS 195 (240)
T ss_dssp TCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHHHHHHHSCGGG
T ss_pred ccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHcchHH
Confidence 35689999999999999999999999999999999999998753 34444444456899999999999999999775432
Q ss_pred ---CCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 125 ---TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 125 ---~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
..+.+++|||+.|+++++++ |++++.+++.++.++|++.|.
T Consensus 196 ~~~l~~~~~~aiG~~ta~~l~~~------G~~~~~va~~p~~~~ll~al~ 239 (240)
T 3mw8_A 196 FAWLRDCHIIVPSARVETQARKK------GLRRVTNAGAANQAAVLDALG 239 (240)
T ss_dssp HHHHHHSEEEESSHHHHHHHHHT------TCCCEEECSSSSHHHHHHHHT
T ss_pred HHHHhCCCEEEECHHHHHHHHHc------CCCceEeCCCCCHHHHHHHhh
Confidence 23689999999999999999 999988999999999998763
No 15
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.50 E-value=0.0061 Score=53.35 Aligned_cols=189 Identities=10% Similarity=0.044 Sum_probs=108.3
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
.+.+.++++|+.++.++.-.-. .....+.+.+....+|.||+.+...-....+.+.+ .+++++++|.... .
T Consensus 31 gi~~~a~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~~----~ 101 (288)
T 3gv0_A 31 GITEVLSTTQYHLVVTPHIHAK--DSMVPIRYILETGSADGVIISKIEPNDPRVRFMTE---RNMPFVTHGRSDM----G 101 (288)
T ss_dssp HHHHHHTTSSCEEEECCBSSGG--GTTHHHHHHHHHTCCSEEEEESCCTTCHHHHHHHH---TTCCEEEESCCCS----S
T ss_pred HHHHHHHHcCCEEEEecCCcch--hHHHHHHHHHHcCCccEEEEecCCCCcHHHHHHhh---CCCCEEEECCcCC----C
Confidence 4455667789888766432211 11122333334478999999875544344444544 3678999987531 1
Q ss_pred HhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeeeCC
Q 022234 144 VIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 215 (300)
Q Consensus 144 ~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~ 215 (300)
. ++.. +..+. ..+..+++.|.+. ..++|.++.+.... .-+.+.|++.|..+....++. ..
T Consensus 102 ~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~---~~ 169 (288)
T 3gv0_A 102 I------EHAF-HDFDNEAYAYEAVERLAQC--GRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVT---IE 169 (288)
T ss_dssp C------CCEE-EEECHHHHHHHHHHHHHHT--TCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCC---TT
T ss_pred C------CCcE-EEeCcHHHHHHHHHHHHHC--CCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheec---cc
Confidence 2 3322 12222 2244556666654 34799999887542 345677888887765433322 12
Q ss_pred CCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHHHHHHHcCCC
Q 022234 216 HVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLK 273 (300)
Q Consensus 216 ~~~~---~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta~~l~~~G~~ 273 (300)
...+ +.... + .++|+|+..+-..+..+++.+.+.+. .++.+++++..-......-++.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~p~lt 237 (288)
T 3gv0_A 170 TPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEAAGVKIGEDVDIVSKQSAEFLNWIKPQIH 237 (288)
T ss_dssp SCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHTTTCCTTTSCEEEEEESSTTHHHHCTTSE
T ss_pred cchHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEecChHHHhccCCCce
Confidence 2221 12222 2 36899999998888888888877653 4788888876543333333443
No 16
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=96.38 E-value=0.07 Score=46.41 Aligned_cols=193 Identities=9% Similarity=0.009 Sum_probs=110.9
Q ss_pred HHHHHHHhC-CCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccch
Q 022234 64 KLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
.+.+.++++ |+.+.......-. .+.+...+. +....+|.||+.+.. +...+.+.+.+. ++++++++...
T Consensus 30 gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~ 104 (304)
T 3gbv_A 30 GIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNEL---GIPYIYIDSQI 104 (304)
T ss_dssp HHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHH---TCCEEEESSCC
T ss_pred HHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 455667777 8888766553221 122222222 235789999998754 445555555543 57899998653
Q ss_pred HHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEc----CCCC-------hhHHHHHHHhCCCeeEE
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPA----SAKA-------SNEIEEGLSNRGFEVVR 205 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~r----g~~~-------~~~L~~~L~~~G~~v~~ 205 (300)
. .. ..+. .+..+.+ .+..+++.|.+.....++|+++. |... ..-+.+.|+++|..+..
T Consensus 105 ~----~~-----~~~~-~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~ 174 (304)
T 3gbv_A 105 K----DA-----PPLA-FFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNI 174 (304)
T ss_dssp T----TS-----CCSE-EEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred C----CC-----CceE-EEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEE
Confidence 2 11 0122 1223322 23445566665533347999998 4322 33466788888888776
Q ss_pred EEeeeeeeCCCCcHHH----HHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHH--HHHHHHcCCC
Q 022234 206 LNTYTTEPVHHVDQTV----LKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETT--ASAAKRLGLK 273 (300)
Q Consensus 206 ~~vY~~~~~~~~~~~~----~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~T--a~~l~~~G~~ 273 (300)
..++..........+. ++.-.++++|+..+-. +-..++.+.+.+..++.+++++... ++.+. -|+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~~~~~~~~~-~~~~ 246 (304)
T 3gbv_A 175 LELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLLERNVTCLK-EGTV 246 (304)
T ss_dssp EEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCCHHHHHHHH-HTSE
T ss_pred EEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCCHHHHHHHH-cCce
Confidence 6665543333332222 2222478999999887 6667777666554578888886544 44444 4654
No 17
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=96.32 E-value=0.029 Score=48.76 Aligned_cols=181 Identities=12% Similarity=0.066 Sum_probs=103.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|+.+..+..-.- .....++.+.+....+|.||+.+...-.. . +.+....+++++++|...
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiIi~~~~~~~~--~-~~~~~~~~iPvV~~~~~~----- 101 (289)
T 3g85_A 32 RGLQSKLAKQNYNYNVVICPYK--TDCLHLEKGISKENSFDAAIIANISNYDL--E-YLNKASLTLPIILFNRLS----- 101 (289)
T ss_dssp HHHHHHHHHTTTCSEEEEEEEC--TTCGGGCGGGSTTTCCSEEEESSCCHHHH--H-HHHHCCCSSCEEEESCCC-----
T ss_pred HHHHHHHHHcCCeEEEEecCCC--chhHHHHHHHHhccCCCEEEEecCCcccH--H-HHHhccCCCCEEEECCCC-----
Confidence 3455677788999876543221 11112222223356899999998654432 1 122223578999999742
Q ss_pred HHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 143 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
- ++.. +..+. ..+..+++.|.+. ..++|.++.+... ..-+.+.|++.|..+....++.....
T Consensus 102 -~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~ 171 (289)
T 3g85_A 102 -N------KYSS-VNVDNYKMGEKASLLFAKK--RYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENS 171 (289)
T ss_dssp -S------SSEE-EEECHHHHHHHHHHHHHHT--TCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSS
T ss_pred -C------CCCE-EEeCHHHHHHHHHHHHHHc--CCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCC
Confidence 1 3322 22222 2345556666654 3468999988654 23466788889877654333322111
Q ss_pred CCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeC--HHH
Q 022234 215 HHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIG--ETT 263 (300)
Q Consensus 215 ~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG--~~T 263 (300)
.....+.... + .++|+|+.++-..+...++.+.+.+. .++.+++++ ...
T Consensus 172 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~~~ 229 (289)
T 3g85_A 172 IHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIGMNDRE 229 (289)
T ss_dssp HHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECSCHH
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCCCCCceEEEEeCCCCcc
Confidence 1111112222 2 36899999999888888888777653 478899988 544
No 18
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=95.93 E-value=0.013 Score=51.09 Aligned_cols=180 Identities=8% Similarity=-0.016 Sum_probs=103.5
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.++++|++++.++. ..+.+. ..+.+....+|.||+.+........+ .....+++++++|....
T Consensus 28 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~---~~~~~~iPvV~~~~~~~- 98 (291)
T 3egc_A 28 SGVESEARHKGYSVLLANT-----AEDIVREREAVGQFFERRVDGLILAPSEGEHDYLR---TELPKTFPIVAVNRELR- 98 (291)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHH---HSSCTTSCEEEESSCCC-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHH---HhhccCCCEEEEecccC-
Confidence 3455677788988876542 112222 11222346899999988765333333 33335789999987642
Q ss_pred HHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. ++... ..+. ..+..+++.|.+. ..++|+++.+... ..-+.+.|++.|..+....++..
T Consensus 99 ---~~------~~~~V-~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~ 166 (291)
T 3egc_A 99 ---IP------GCGAV-LSENVRGARTAVEYLIAR--GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAG 166 (291)
T ss_dssp ---CT------TCEEE-EECHHHHHHHHHHHHHHT--TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC-
T ss_pred ---CC------CCCEE-EECcHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeC
Confidence 12 33322 2222 2234555666654 3478999988764 23466778888876543222222
Q ss_pred eeCCCCc-HHHHHHc---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 212 EPVHHVD-QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 212 ~~~~~~~-~~~~~~l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
....... ..+.+.+ .++|+|+..+-..+..+++.+.+.+. .++.+++++..-
T Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 225 (291)
T 3egc_A 167 GVRADNGRDGAIKVLTGADRPTALLTSSHRITEGAMQALNVLGLRYGPDVEIVSFDNLP 225 (291)
T ss_dssp -----CCHHHHHHHHTC-CCCSEEEESSHHHHHHHHHHHHHHTCCBTTTBEEEEESCCG
T ss_pred CCChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEecCch
Confidence 1112222 2222222 47899999998888888887777653 378888887644
No 19
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=95.78 E-value=0.021 Score=49.66 Aligned_cols=180 Identities=6% Similarity=0.004 Sum_probs=102.7
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+++..+..- .+.+. +.+.+....+|.||+.+...-....+.+.+. +++++++|......
T Consensus 34 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~~~ 105 (292)
T 3k4h_A 34 GISSFAHVEGYALYMSTGE-----TEEEIFNGVVKMVQGRQIGGIILLYSRENDRIIQYLHEQ---NFPFVLIGKPYDRK 105 (292)
T ss_dssp HHHHHHHHTTCEEEECCCC-----SHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHHHHHHHT---TCCEEEESCCSSCT
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHHC---CCCEEEECCCCCCC
Confidence 4556778889887664321 11121 2222235789999997765444445555443 67899998753210
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
. ++.. +..+.+ .+...++.|.+. ..++|+++.+.... .-+.+.|++.|..+....++...
T Consensus 106 ---~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 173 (292)
T 3k4h_A 106 ---D------EITY-VDNDNYTAAREVAEYLISL--GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFD 173 (292)
T ss_dssp ---T------TSCE-EECCHHHHHHHHHHHHHHT--TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECC
T ss_pred ---C------CCCE-EEECcHHHHHHHHHHHHHC--CCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecC
Confidence 0 1221 222222 234555666654 34689999887542 34667888888776433232211
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 213 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 213 ~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.......+.... + .++|+|+.++-..+...++.+.+.+. .++.+++++..-
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~ 231 (292)
T 3k4h_A 174 FSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNAL 231 (292)
T ss_dssp SSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred CCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHHhCCCCCCeEEEEEecCcc
Confidence 111111111222 2 37899999998888888888777653 478899887643
No 20
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=95.76 E-value=0.037 Score=48.43 Aligned_cols=182 Identities=10% Similarity=0.076 Sum_probs=105.3
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|+.++.+..-. ......+.+.+....+|.||+.+...-....+.+.+ .+++++++|... .
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~----~ 99 (294)
T 3qk7_A 30 SWIGIELGKRGLDLLLIPDEP---GEKYQSLIHLVETRRVDALIVAHTQPEDFRLQYLQK---QNFPFLALGRSH----L 99 (294)
T ss_dssp HHHHHHHHHTTCEEEEEEECT---TCCCHHHHHHHHHTCCSEEEECSCCSSCHHHHHHHH---TTCCEEEESCCC----C
T ss_pred HHHHHHHHHCCCEEEEEeCCC---hhhHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEECCCC----C
Confidence 345567788999988776522 222233334444568999999876533333444444 367899998752 1
Q ss_pred HHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 143 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
.. ++.. +..+.+ .+...++.|.+. ..++|.++.+... ..-+.+.|++.|..+....++.....
T Consensus 100 ~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~ 170 (294)
T 3qk7_A 100 PK------PYAW-FDFDNHAGASLAVKRLLEL--GHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPT 170 (294)
T ss_dssp SS------CCEE-EEECHHHHHHHHHHHHHHT--TCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSS
T ss_pred CC------CCCE-EEcChHHHHHHHHHHHHHC--CCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCC
Confidence 12 3332 122222 234445556554 3468999988753 23466778888877643323322111
Q ss_pred CCCcHH----HHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 215 HHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 215 ~~~~~~----~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.....+ +++...++|+|+.++-..+-..++.+.+.+. .++.++.++...
T Consensus 171 ~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~ 226 (294)
T 3qk7_A 171 RPGGYLAASRLLALEVPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGLP 226 (294)
T ss_dssp HHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCSC
T ss_pred HHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCcc
Confidence 111111 2221247899999998888778777776653 378888887643
No 21
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=95.67 E-value=0.075 Score=47.68 Aligned_cols=216 Identities=12% Similarity=0.033 Sum_probs=113.6
Q ss_pred CCeEEEeCCCCch--------HHHHHHHHhCCCCEEEeeeeEeeeCCCch----hHHHhhhc-CCccEEEEeCh-HHHHH
Q 022234 50 NPKVVVTRERGKN--------GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLND-TIFDWIIITSP-EAGSV 115 (300)
Q Consensus 50 g~~VlitR~~~~~--------~~l~~~L~~~G~~v~~~P~i~~~~~~~~~----~l~~~l~~-~~~d~ivFTS~-~av~~ 115 (300)
.++|.+.-|.... ..+.+.++++|+++..+.. ..+.+ .+...+.. ..+|+||++.. .....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~ 77 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA-----ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQ 77 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC-----CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHH
Confidence 3556655554322 3455666778998876532 12222 23333333 58999999862 34444
Q ss_pred HHHHHHHcCCCCceEEEEccchHHHHHHHhhcc---CCCccccccCCCC-cHHHHHHhcccCC----CCC-CEEEEEcCC
Q 022234 116 FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSS---KCSLDVAFSPSKA-TGKILASELPKNG----KKK-CTVLYPASA 186 (300)
Q Consensus 116 ~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~---~~G~~~~~~p~~~-~~e~L~~~L~~~~----~~~-~~vL~~rg~ 186 (300)
+.+.+. ..++++++++......-+...+.. .......+....+ .+..+++.|.+.. ... ++|+++.|.
T Consensus 78 ~~~~~~---~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~ 154 (350)
T 3h75_A 78 ILRLSQ---GSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGL 154 (350)
T ss_dssp HHHHHT---TSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESC
T ss_pred HHHHHH---hCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCC
Confidence 444333 347899999876433211000000 0000111222222 2334444554432 112 589999887
Q ss_pred CC-------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCC-
Q 022234 187 KA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ- 251 (300)
Q Consensus 187 ~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~- 251 (300)
.. ..-+.+.|++.|. +....++.. ....+ ++++...++++|+..+-..+...++.+.+.+.
T Consensus 155 ~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 155 KVTPAAQLRERGLRRALAEHPQ-VHLRQLVYG---EWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp TTSHHHHHHHHHHHHHHHHCTT-EEEEEEEEC---TTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeC---CCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCC
Confidence 54 2356778888886 333333222 22221 12222246889999988888778887777653
Q ss_pred --CCceEEEeCHHHH--HHHHHcCCCeEEe
Q 022234 252 --WSNSVACIGETTA--SAAKRLGLKNVYY 277 (300)
Q Consensus 252 --~~~~vv~IG~~Ta--~~l~~~G~~~~~v 277 (300)
.++.+++++.... +.+..-.+..+..
T Consensus 231 vP~di~vvg~d~~~~~l~~~~~~~lttv~~ 260 (350)
T 3h75_A 231 PGTDLLFSGVNSSPEALQALIDGKLSVLEA 260 (350)
T ss_dssp BTTTBEEEEESCCHHHHHHHHHTSSCEEEE
T ss_pred CCCCeEEEecCCCHHHHHHHHcCCeeEEEc
Confidence 3688998875443 3666656664433
No 22
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=95.53 E-value=0.17 Score=43.68 Aligned_cols=215 Identities=10% Similarity=-0.012 Sum_probs=115.1
Q ss_pred CCeEEEeCCCCc-------hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHH
Q 022234 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFL 117 (300)
Q Consensus 50 g~~VlitR~~~~-------~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~ 117 (300)
.++|.+.-+... ...+.+.++++|+++..+.. ..+.+...+.+ ....+|.||+.... ......
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-----GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWL 79 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHH
Confidence 355655544322 23456677888988876532 12222111222 24679999988654 555555
Q ss_pred HHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------
Q 022234 118 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS------- 189 (300)
Q Consensus 118 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~------- 189 (300)
+.+.+. +++++++|.... . ++.. +..+.+ .+..+++.|.+...+.++|+++.|....
T Consensus 80 ~~~~~~---~iPvV~~~~~~~-----~------~~~~-V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~ 144 (291)
T 3l49_A 80 QKINDA---GIPLFTVDTATP-----H------AINN-TTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRY 144 (291)
T ss_dssp HHHHHT---TCCEEEESCCCT-----T------CSEE-EEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHH
T ss_pred HHHHHC---CCcEEEecCCCC-----C------cCce-EecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHH
Confidence 555553 678999987641 2 2322 222222 2445555665521234799999876542
Q ss_pred hHHHHHHHhC-CCee-EEEEeeeeeeCCCCcH-------HHHHHcC---CCCEEEEEChHHHHHHHHHhcccCCCCceEE
Q 022234 190 NEIEEGLSNR-GFEV-VRLNTYTTEPVHHVDQ-------TVLKQAL---SIPVVAVASPSAVRSWVNLISDTEQWSNSVA 257 (300)
Q Consensus 190 ~~L~~~L~~~-G~~v-~~~~vY~~~~~~~~~~-------~~~~~l~---~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv 257 (300)
.-+.+.|++. |+++ ....++. .....+ ++++... ++|+|+..+-..+...++.+.+.+..++.++
T Consensus 145 ~gf~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vv 221 (291)
T 3l49_A 145 DQMKYVLEAFPDVKIIEPELRDV---IPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGRTDIRTY 221 (291)
T ss_dssp HHHHHHHHTCTTEEECSSCBCCC---SSSHHHHHHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHHCCCCEEEeeeccCC---CCCCHHHHHHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCCCCeEEE
Confidence 2355677777 4442 1111111 111111 1222224 6899999998888888888877664477888
Q ss_pred EeCHH--HHHHHHHcCCCeEEecCCCCHHHHHH
Q 022234 258 CIGET--TASAAKRLGLKNVYYPTHPGLEGWVD 288 (300)
Q Consensus 258 ~IG~~--Ta~~l~~~G~~~~~v~~~p~~~~l~~ 288 (300)
+++.. ..+.+ ..|..+.+..-..+.+.+..
T Consensus 222 g~d~~~~~~~~i-~~~~~p~lttv~~~~~~~g~ 253 (291)
T 3l49_A 222 GVDGSPEFVEMV-ADPESPAGAVAAQQPSEIGK 253 (291)
T ss_dssp EEECCHHHHHHH-HCTTSCEEEEEECCHHHHHH
T ss_pred EecCCHHHHHHH-HCCCCCeEEEEecCHHHHHH
Confidence 87543 33333 34553322222234444444
No 23
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=95.22 E-value=0.062 Score=46.99 Aligned_cols=202 Identities=8% Similarity=-0.014 Sum_probs=112.1
Q ss_pred CCeEEEeCCCCch-------HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHH
Q 022234 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFL 117 (300)
Q Consensus 50 g~~VlitR~~~~~-------~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~ 117 (300)
+++|.+.-+...+ ..+.+.++++|+++..+. ....+.+...+.+ ....+|.||+.+.. ......
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG----AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTI 79 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE----CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC----CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHH
Confidence 4666555444322 345566777898887531 1111322222222 23679999998643 334445
Q ss_pred HHHHHcCCCCceEEEEccchHHHHHHHhhccCCC-ccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC------h
Q 022234 118 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA------S 189 (300)
Q Consensus 118 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G-~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~------~ 189 (300)
+.+.+. ++++++++.... .. + +.. +..+.+ .+..+++.|.+...+.++|+++.+... .
T Consensus 80 ~~~~~~---~iPvV~~~~~~~----~~------~~~~~-V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~ 145 (305)
T 3g1w_A 80 NKAVDA---GIPIVLFDSGAP----DS------HAHSF-LGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERT 145 (305)
T ss_dssp HHHHHT---TCCEEEESSCCT----TS------CCSCE-EECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHH
T ss_pred HHHHHC---CCcEEEECCCCC----CC------ceeEE-ECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHH
Confidence 555443 678999987542 11 1 221 223322 234455555554323468999987643 2
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHH----HHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHH-
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT- 263 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~----~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~T- 263 (300)
.-+.+.|+++|..+....++..........+ +++.-.++++|+..+-..+-..++.+.+.+. .++.+++++..-
T Consensus 146 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~vig~d~~~~ 225 (305)
T 3g1w_A 146 TGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDKG 225 (305)
T ss_dssp HHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHH
T ss_pred HHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhhHHHHHHhcCCCCCeEEEEeCCCHH
Confidence 2467778888877776665543211111111 2222246889999988888888887777654 378899987643
Q ss_pred -HHHHHH
Q 022234 264 -ASAAKR 269 (300)
Q Consensus 264 -a~~l~~ 269 (300)
...+..
T Consensus 226 ~~~~~~~ 232 (305)
T 3g1w_A 226 TLDLVDE 232 (305)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 444544
No 24
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=95.20 E-value=0.49 Score=39.40 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=85.7
Q ss_pred CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 022234 127 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 127 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 206 (300)
+..++.-.-.|++.|++.+ ++++..+ ..+.-++++.|......++++.++.....
T Consensus 51 ~~dVIISRGgta~~lr~~~-----~iPVV~I--~~s~~Dil~al~~a~~~~~kIavvg~~~~------------------ 105 (196)
T 2q5c_A 51 EVDAIISRGATSDYIKKSV-----SIPSISI--KVTRFDTMRAVYNAKRFGNELALIAYKHS------------------ 105 (196)
T ss_dssp TCSEEEEEHHHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHHGGGCSEEEEEEESSC------------------
T ss_pred CCeEEEECChHHHHHHHhC-----CCCEEEE--cCCHhHHHHHHHHHHhhCCcEEEEeCcch------------------
Confidence 4445555566899999885 7766555 45677787777654333456666643322
Q ss_pred EeeeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHH
Q 022234 207 NTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 285 (300)
Q Consensus 207 ~vY~~~~~~~~~~~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~ 285 (300)
.. ....+.+.+ .+++...+.|+..++..++.+.+. +..++.=|..+.+.++++|++.+.+ ..+.++
T Consensus 106 ------~~--~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~---G~~vvVG~~~~~~~A~~~Gl~~vli--~sg~eS 172 (196)
T 2q5c_A 106 ------IV--DKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTE---NIKIVVSGKTVTDEAIKQGLYGETI--NSGEES 172 (196)
T ss_dssp ------SS--CHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHT---TCCEEEECHHHHHHHHHTTCEEEEC--CCCHHH
T ss_pred ------hh--HHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHC---CCeEEECCHHHHHHHHHcCCcEEEE--ecCHHH
Confidence 11 111222222 245667777777777777777664 5777777999999999999987543 346888
Q ss_pred HHHHHHHHHH
Q 022234 286 WVDSILEALR 295 (300)
Q Consensus 286 l~~ai~~~~~ 295 (300)
+-+++.++.+
T Consensus 173 I~~Ai~eA~~ 182 (196)
T 2q5c_A 173 LRRAIEEALN 182 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887663
No 25
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=95.13 E-value=0.078 Score=45.52 Aligned_cols=176 Identities=10% Similarity=0.003 Sum_probs=98.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHH---HhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~---~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|++++..+. ..+.+... +.+....+|.||+.+...-....+.+.+. +++++++|....
T Consensus 24 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~---~iPvV~~~~~~~-- 93 (275)
T 3d8u_A 24 SFQQALNKAGYQLLLGYS-----DYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEAS---NTPVLEIAELSS-- 93 (275)
T ss_dssp HHHHHHHHTSCEECCEEC-----TTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHHH---TCCEEEESSSCS--
T ss_pred HHHHHHHHCCCEEEEEcC-----CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhC---CCCEEEEeeccC--
Confidence 445667788987654321 12222211 22234679999987654323334444432 578888886431
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.. ++.. +..+.+ .+..+++.|.+. ..++|.++.+... ..-+.+.|+++|..+....++..
T Consensus 94 --~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~- 161 (275)
T 3d8u_A 94 --KA------SYLN-IGVDHFEVGKACTRHLIEQ--GFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHE- 161 (275)
T ss_dssp --SS------SSEE-ECBCHHHHHHHHHHHHHTT--TCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSS-
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeC-
Confidence 12 3321 222222 234455666654 3468999988643 22466788889977654333321
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 213 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 213 ~~~~~~~---~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
....+ +..+. + .++|+|+.++-..+..+++.+.+.+. .++.+++++..-
T Consensus 162 --~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 220 (275)
T 3d8u_A 162 --APSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSS 220 (275)
T ss_dssp --CCCHHHHHHHHHHHHTTCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEESSCCH
T ss_pred --CCChhHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEecCCch
Confidence 22221 11222 2 35899999998888878877776552 467888887643
No 26
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=95.04 E-value=0.084 Score=46.30 Aligned_cols=178 Identities=15% Similarity=0.054 Sum_probs=102.2
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEccchH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~av~~-~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
..+.+.++++|+.++.+..- .+.+. +.+.+....+|.||+.+...-.. ..+.+.+ +++++++|....
T Consensus 35 ~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~----~iPvV~i~~~~~ 105 (303)
T 3kke_A 35 SGVQMAASGHSTDVLLGQID-----APPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE----GVPAVTINSRVP 105 (303)
T ss_dssp HHHHHHHHHTTCCEEEEECC-----STTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT----TSCEEEESCCCT
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC----CCCEEEECCcCC
Confidence 34556778889998765431 12221 22223357899999987654333 4444443 678999987642
Q ss_pred HHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
. .. .. +..+.+ .+...++.|.+. ..++|.++.|... ..-+.+.|++.|..+....++.
T Consensus 106 ~---~~--------~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 171 (303)
T 3kke_A 106 G---RV--------GS-VILDDQKGGGIATEHLITL--GHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVD 171 (303)
T ss_dssp T---CC--------CE-EEECHHHHHHHHHHHHHHT--TCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEE
T ss_pred C---CC--------CE-EEECcHHHHHHHHHHHHHC--CCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEe
Confidence 2 11 11 112222 234445556554 3468999988654 2346677888997765322222
Q ss_pred eeeCCCCc-HHHHHH-----c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 211 TEPVHHVD-QTVLKQ-----A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 211 ~~~~~~~~-~~~~~~-----l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
........ ..+.+. + .++|+|+..+-..+-..+..+.+.+. .++.++.++..-
T Consensus 172 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~ 236 (303)
T 3kke_A 172 AGWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIVGINTTW 236 (303)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred cCCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEcChh
Confidence 21111111 112222 3 36899999998888888887777653 478899987653
No 27
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=94.80 E-value=0.068 Score=46.10 Aligned_cols=174 Identities=11% Similarity=0.077 Sum_probs=99.1
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
.+.+.++++|+++..+..- .+......++ .+....+|.|| .+...-..... . .+++++.+|.... ..
T Consensus 26 gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~-~l~~~~vdgiI-~~~~~~~~~~~---~---~~iPvV~~~~~~~---~~ 92 (280)
T 3gyb_A 26 SLSDVLTPKGYRLSVIDSL--TSQAGTDPIT-SALSMRPDGII-IAQDIPDFTVP---D---SLPPFVIAGTRIT---QA 92 (280)
T ss_dssp HHHHHHGGGTCEEEEECSS--SSCSSSCHHH-HHHTTCCSEEE-EESCC--------------CCCEEEESCCCS---SS
T ss_pred HHHHHHHHCCCEEEEEeCC--CchHHHHHHH-HHHhCCCCEEE-ecCCCChhhHh---h---cCCCEEEECCCCC---CC
Confidence 4556677889988876654 2111122232 33457899999 44433322222 2 4788999987641 11
Q ss_pred HhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCC
Q 022234 144 VIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHV 217 (300)
Q Consensus 144 ~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~ 217 (300)
. ++.. +..+. ..+..+++.|.+. ..++|.++.+... ..-+.+.|++.|..+.....+ ....
T Consensus 93 ~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~----~~~~ 159 (280)
T 3gyb_A 93 S------THDS-VANDDFRGAEIATKHLIDL--GHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYL----GPAV 159 (280)
T ss_dssp C------STTE-EEECHHHHHHHHHHHHHHT--TCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCC----SCCC
T ss_pred C------CCCE-EEechHHHHHHHHHHHHHC--CCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccccc----CCCC
Confidence 2 3322 12222 2244555666654 3478999998764 345667788999776543221 1222
Q ss_pred cH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 218 DQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 218 ~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.+ ++++...++|+|+.++-..+...++.+.+.+. .++.+++++..-
T Consensus 160 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 215 (280)
T 3gyb_A 160 EHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYDNTP 215 (280)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCCH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCeeEEEEECCch
Confidence 21 12222246899999998888888887777653 478899987544
No 28
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=94.76 E-value=0.076 Score=46.25 Aligned_cols=176 Identities=10% Similarity=0.046 Sum_probs=102.5
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|++++.+..-. ..+.....+.+....+|.||+.+...-....+.+.+ +++++++|....
T Consensus 31 ~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~----~iPvV~i~~~~~---- 99 (289)
T 3k9c_A 31 EQIYAAATRRGYDVMLSAVAP---SRAEKVAVQALMRERCEAAILLGTRFDTDELGALAD----RVPALVVARASG---- 99 (289)
T ss_dssp HHHHHHHHHTTCEEEEEEEBT---TBCHHHHHHHHTTTTEEEEEEETCCCCHHHHHHHHT----TSCEEEESSCCS----
T ss_pred HHHHHHHHHCCCEEEEEeCCC---CHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHc----CCCEEEEcCCCC----
Confidence 345567788899887665321 111111112223468999999875433334444432 688999997542
Q ss_pred HHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeeeCC
Q 022234 143 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVH 215 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~ 215 (300)
.. ++.. +..+.+ .+...++.|.+. ..++|.++.+... ..-+.+.|++.|..+....++ . .
T Consensus 100 ~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~-~---~ 166 (289)
T 3k9c_A 100 LP------GVGA-VRGDDVAGITLAVDHLTEL--GHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVT-G---G 166 (289)
T ss_dssp ST------TSEE-EEECHHHHHHHHHHHHHHT--TCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEEC-C---C
T ss_pred CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEE-C---C
Confidence 22 3332 222222 234455566554 3468999988653 235677889999876553222 1 2
Q ss_pred CCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 216 HVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 216 ~~~~---~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
...+ +..+. + .++|+|+..+-..+-..++.+.+.+. .++.++.++..
T Consensus 167 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D~~ 223 (289)
T 3k9c_A 167 TTETEGAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYDDS 223 (289)
T ss_dssp SSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEEECCH
Confidence 2221 11222 2 46899999998888888887776653 37788888654
No 29
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=94.55 E-value=0.83 Score=38.94 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=87.7
Q ss_pred ceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 022234 128 VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 128 ~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 207 (300)
..++.-.-.|++.|++.+ ++++..+ ..+.-++++.|......++++.++.....-..+
T Consensus 64 ~dVIISRGgta~~Lr~~~-----~iPVV~I--~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~--------------- 121 (225)
T 2pju_A 64 CDAIIAAGSNGAYLKSRL-----SVPVILI--KPSGYDVLQFLAKAGKLTSSIGVVTYQETIPAL--------------- 121 (225)
T ss_dssp CSEEEEEHHHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHH---------------
T ss_pred CeEEEeCChHHHHHHhhC-----CCCEEEe--cCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHH---------------
Confidence 445555566899999875 6666544 456778888887655445566666443322111
Q ss_pred eeeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHH
Q 022234 208 TYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGW 286 (300)
Q Consensus 208 vY~~~~~~~~~~~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l 286 (300)
..+.+.+ .+++...+.|+..++..++.+.+. +..++.=|..+.+.++++|++.+.+- +.+++
T Consensus 122 -----------~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~---G~~vVVG~~~~~~~A~~~Gl~~vlI~---s~eSI 184 (225)
T 2pju_A 122 -----------VAFQKTFNLRLDQRSYITEEDARGQINELKAN---GTEAVVGAGLITDLAEEAGMTGIFIY---SAATV 184 (225)
T ss_dssp -----------HHHHHHHTCCEEEEEESSHHHHHHHHHHHHHT---TCCEEEESHHHHHHHHHTTSEEEESS---CHHHH
T ss_pred -----------HHHHHHhCCceEEEEeCCHHHHHHHHHHHHHC---CCCEEECCHHHHHHHHHcCCcEEEEC---CHHHH
Confidence 1122222 256677888888888888877764 57787779999999999999976654 36999
Q ss_pred HHHHHHHHH
Q 022234 287 VDSILEALR 295 (300)
Q Consensus 287 ~~ai~~~~~ 295 (300)
-+++.+...
T Consensus 185 ~~Ai~eA~~ 193 (225)
T 2pju_A 185 RQAFSDALD 193 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887663
No 30
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=94.46 E-value=0.18 Score=43.52 Aligned_cols=192 Identities=11% Similarity=0.053 Sum_probs=108.0
Q ss_pred CeEEEeCCCCc-------hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH-----HHHH
Q 022234 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE-----AGSV 115 (300)
Q Consensus 51 ~~VlitR~~~~-------~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~-----av~~ 115 (300)
++|.+.-+... ...+.+.++++|+++..+..- .+.+...+.+ ....+|.||+.+.. ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 56665544322 235566777889988765421 2222212222 34789999997653 2333
Q ss_pred HHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCCCEEEEEcCCCC------
Q 022234 116 FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------ 188 (300)
Q Consensus 116 ~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~------ 188 (300)
..+.+.+. +++++.+|.... .. ++.. +..+. ..+..+++.|.+. ..++|.++.+...
T Consensus 91 ~~~~~~~~---~iPvV~~~~~~~----~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~R 154 (298)
T 3tb6_A 91 YYLNLEKN---GIPFAMINASYA----EL------AAPS-FTLDDVKGGMMAAEHLLSL--GHTHMMGIFKADDTQGVKR 154 (298)
T ss_dssp HHHHHHHT---TCCEEEESSCCT----TC------SSCE-EEECHHHHHHHHHHHHHHT--TCCSEEEEEESSSHHHHHH
T ss_pred HHHHHHhc---CCCEEEEecCcC----CC------CCCE-EEeCcHHHHHHHHHHHHHC--CCCcEEEEcCCCCccHHHH
Confidence 44444443 678999987531 11 2222 12222 2244556666654 3468888877654
Q ss_pred hhHHHHHHHhCCCeeEEEEeeee--eeCCCC-c---HHHHHHcCC--CCEEEEEChHHHHHHHHHhcccCC---CCceEE
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTT--EPVHHV-D---QTVLKQALS--IPVVAVASPSAVRSWVNLISDTEQ---WSNSVA 257 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~--~~~~~~-~---~~~~~~l~~--~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv 257 (300)
..-+.+.|+++|..+....++.. ...... . .++++...+ +|+|+..+-..+...+..+.+.+. .++.++
T Consensus 155 ~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 155 MNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 23466788899877543222222 111110 1 122332345 899999998888888888777653 467888
Q ss_pred EeCHHH
Q 022234 258 CIGETT 263 (300)
Q Consensus 258 ~IG~~T 263 (300)
+++...
T Consensus 235 g~d~~~ 240 (298)
T 3tb6_A 235 GYDDSH 240 (298)
T ss_dssp CSBCCT
T ss_pred ecCCcH
Confidence 887643
No 31
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.46 E-value=0.42 Score=38.50 Aligned_cols=112 Identities=15% Similarity=0.230 Sum_probs=71.0
Q ss_pred CCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHHH
Q 022234 177 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWVN 244 (300)
Q Consensus 177 ~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-----s~v~~~~~ 244 (300)
..++++.+-.. +...+...|+..|++|..+-.. .+++++.+.. .++|+|.+++. ..++.+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~------~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~ 91 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR------QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMA 91 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB------CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHH
Confidence 45777664332 3567788999999888655443 2233344333 48898888875 34566666
Q ss_pred HhcccCCCCceEEEeCHHHHH---HHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 245 LISDTEQWSNSVACIGETTAS---AAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 245 ~~~~~~~~~~~vv~IG~~Ta~---~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
.+++.+..++++++=|+...+ .+++.|...++ ....+.+..++.+.+.+.
T Consensus 92 ~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~-~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 92 KLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIF-LPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp HHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEE-CTTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEE-CCCCCHHHHHHHHHHHHH
Confidence 666544346888887854432 37889998544 444566677777776654
No 32
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=94.41 E-value=0.074 Score=47.18 Aligned_cols=207 Identities=12% Similarity=0.058 Sum_probs=114.7
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeC----CCchhHHHhhhcCCccEEEEe---------------
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG----PDTDRLSSVLNDTIFDWIIIT--------------- 108 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~----~~~~~l~~~l~~~~~d~ivFT--------------- 108 (300)
+.||+|++.........+.+.|.+.|+++.....-..... ...+++.+ ...++|.|+..
T Consensus 3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~ii~~~~~~~~~~~i~~~~~ 80 (293)
T 3d4o_A 3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEV--DWNTVDAILLPISGTNEAGKVDTIFS 80 (293)
T ss_dssp CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGC--CGGGCSEEECCTTCCCTTCBCCBSSC
T ss_pred ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHH--HHhcCCEEEeccccccCCceeecccc
Confidence 6789999998877778889999999999876532100000 00011111 24578888863
Q ss_pred -ChHHH-HHHHHHHHHcCCCCceEEEEccchH---HHHHHHhhccCCCccccccCC-----CCcHH----HHHHhc-c--
Q 022234 109 -SPEAG-SVFLEAWKEAGTPNVRIGVVGAGTA---SIFEEVIQSSKCSLDVAFSPS-----KATGK----ILASEL-P-- 171 (300)
Q Consensus 109 -S~~av-~~~~~~l~~~~~~~~~i~aVG~~Ta---~~L~~~~~~~~~G~~~~~~p~-----~~~~e----~L~~~L-~-- 171 (300)
++.-+ +.+++. .++.+++++|-..- +++++. |+.+...|. ..++. ..+..+ .
T Consensus 81 ~~~~~~~~~~l~~-----~~~l~~i~~G~d~id~~~~~~~~------gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~~ 149 (293)
T 3d4o_A 81 NESIVLTEEMIEK-----TPNHCVVYSGISNTYLNQCMKKT------NRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHT 149 (293)
T ss_dssp SCCCBCCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHH------TCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCccchHHHHHh-----CCCCCEEEecCCCHHHHHHHHHc------CCeEEEecCCceeeeeccHhHHHHHHHHHHHhc
Confidence 11111 222222 13466677886654 467788 998876663 12322 222211 1
Q ss_pred cCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCC--------C---cHHHHHHcCCCCEEEEEChHHH-
Q 022234 172 KNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------V---DQTVLKQALSIPVVAVASPSAV- 239 (300)
Q Consensus 172 ~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--------~---~~~~~~~l~~~d~IvftS~s~v- 239 (300)
.....++++++++...-...+...|...|++| .+|.+.+... . ...+.+.+...|+|+.+.|...
T Consensus 150 ~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i 226 (293)
T 3d4o_A 150 DFTIHGANVAVLGLGRVGMSVARKFAALGAKV---KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVV 226 (293)
T ss_dssp SSCSTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCB
T ss_pred CCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEE---EEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHh
Confidence 12346889999987666677888899999754 4555432110 0 0122233568899999988532
Q ss_pred -HHHHHHhcccCCCCceEEEeC--H--HHHHHHHHcCCCe
Q 022234 240 -RSWVNLISDTEQWSNSVACIG--E--TTASAAKRLGLKN 274 (300)
Q Consensus 240 -~~~~~~~~~~~~~~~~vv~IG--~--~Ta~~l~~~G~~~ 274 (300)
+..++.+++ +..++-++ + ..-+.+++.|+..
T Consensus 227 ~~~~l~~mk~----~~~lin~ar~~~~~~~~~a~~~Gv~~ 262 (293)
T 3d4o_A 227 TANVLAEMPS----HTFVIDLASKPGGTDFRYAEKRGIKA 262 (293)
T ss_dssp CHHHHHHSCT----TCEEEECSSTTCSBCHHHHHHHTCEE
T ss_pred CHHHHHhcCC----CCEEEEecCCCCCCCHHHHHHCCCEE
Confidence 122333332 23333333 1 1125667778764
No 33
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=94.39 E-value=0.091 Score=46.71 Aligned_cols=175 Identities=15% Similarity=0.118 Sum_probs=100.5
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCC----chhHHHhhhcCCccEEEE----eC--------
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD----TDRLSSVLNDTIFDWIII----TS-------- 109 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~----~~~l~~~l~~~~~d~ivF----TS-------- 109 (300)
+.+.||+|++...........+.|.+.|+++.....-....... .+++.+ ...++|.|+. ..
T Consensus 3 ~~~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~ii~~~~~~~~~~~i~s~ 80 (300)
T 2rir_A 3 AMLTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEI--PFQQIDSIILPVSATTGEGVVSTV 80 (300)
T ss_dssp CCCCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGS--CGGGCSEEECCSSCEETTTEECBS
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHH--HHhcCCEEEeccccccCCcccccc
Confidence 34779999999887777888999999999987542111000000 011111 2357888886 21
Q ss_pred --hHH--H-HHHHHHHHHcCCCCceEEEEccchHH---HHHHHhhccCCCccccccCCCCcHHHHHHhc-----------
Q 022234 110 --PEA--G-SVFLEAWKEAGTPNVRIGVVGAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASEL----------- 170 (300)
Q Consensus 110 --~~a--v-~~~~~~l~~~~~~~~~i~aVG~~Ta~---~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L----------- 170 (300)
..- + +.+++.+ ++.+++++|-.... ++.+. |+.+..+|.. ++-.+...+
T Consensus 81 ~a~~~~~~~~~~l~~~-----~~l~~i~~g~~~~d~~~~~~~~------gi~v~~~~~~-~~v~~~r~~~~~~g~~~~~~ 148 (300)
T 2rir_A 81 FSNEEVVLKQDHLDRT-----PAHCVIFSGISNAYLENIAAQA------KRKLVKLFER-DDIAIYNSIPTVEGTIMLAI 148 (300)
T ss_dssp SCSSCEECCHHHHHTS-----CTTCEEEESSCCHHHHHHHHHT------TCCEEEGGGS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccchHHHHhhc-----CCCCEEEEecCCHHHHHHHHHC------CCEEEeecCC-CceEEEcCccHHHHHHHHHH
Confidence 111 2 2233222 34556668866544 67777 9988766653 211222211
Q ss_pred --ccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCC--------C---cHHHHHHcCCCCEEEEEChH
Q 022234 171 --PKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------V---DQTVLKQALSIPVVAVASPS 237 (300)
Q Consensus 171 --~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--------~---~~~~~~~l~~~d~IvftS~s 237 (300)
......++++++++.......+...|...|++| .+|.+.+... . ...+.+.+.+.|+|+.+.|.
T Consensus 149 ~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~ 225 (300)
T 2rir_A 149 QHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANV---KVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS 225 (300)
T ss_dssp HTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred HhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEE---EEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh
Confidence 112346889999987666667788899999754 4555432110 0 01223335688999998885
No 34
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=94.20 E-value=0.073 Score=46.50 Aligned_cols=203 Identities=15% Similarity=0.102 Sum_probs=112.2
Q ss_pred CCeEEEeCCCCc-------hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHH
Q 022234 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFL 117 (300)
Q Consensus 50 g~~VlitR~~~~-------~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~ 117 (300)
..+|.+.-+... ...+.+.++++|+++.....- ...+.+...+.+ ....+|.||+.... +.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~ 79 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPP---GANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSL 79 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCS---SSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCC---CcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 345665555432 233456677789888755421 001222211222 24679999987643 335555
Q ss_pred HHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------h
Q 022234 118 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------S 189 (300)
Q Consensus 118 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~ 189 (300)
+.+.+. ++++++++......-... .+. .+..+.+ .+..+++.|.+.....++++++.|... .
T Consensus 80 ~~~~~~---giPvV~~~~~~~~~~~~~------~~~-~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~ 149 (297)
T 3rot_A 80 QRANKL---NIPVIAVDTRPKDKTKNP------YLV-FLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRA 149 (297)
T ss_dssp HHHHHH---TCCEEEESCCCSCTTTSC------CSC-EEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHH
T ss_pred HHHHHC---CCCEEEEcCCCccccccC------cce-EEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHH
Confidence 555543 578899886542110001 121 1222222 234455556554323579999987754 2
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHHhcccCC----CCceEEE
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ----WSNSVAC 258 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~----~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~----~~~~vv~ 258 (300)
.-+.+.|++.|+++..+. .....+ + +++...++|+|+..+-..+...++.+.+.+. .++.++.
T Consensus 150 ~Gf~~~l~~~g~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig 223 (297)
T 3rot_A 150 YGIKTILQDKGIFFEELD------VGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYS 223 (297)
T ss_dssp HHHHHHHHHTTCEEEEEE------CCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEE
T ss_pred HHHHHHHHhcCCeEEEee------cCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEE
Confidence 356778999998775432 111221 1 2222247899999998888888888777653 3788999
Q ss_pred eCHHHH--HHHHHcCC
Q 022234 259 IGETTA--SAAKRLGL 272 (300)
Q Consensus 259 IG~~Ta--~~l~~~G~ 272 (300)
++..-. ..+.. |.
T Consensus 224 ~D~~~~~~~~i~~-~~ 238 (297)
T 3rot_A 224 FDKTPNTVSLIHK-KL 238 (297)
T ss_dssp ECCCHHHHHHHHT-TS
T ss_pred eCCCHHHHHHHHc-CC
Confidence 876433 44443 54
No 35
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=94.17 E-value=0.074 Score=46.66 Aligned_cols=177 Identities=8% Similarity=-0.024 Sum_probs=100.9
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCch---hHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~---~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.++.+..- .+.+ .+.+.+....+|.||+.+...-....+.+.+ .+++++.+|...
T Consensus 48 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~--- 116 (305)
T 3huu_A 48 GINQACNVRGYSTRMTVSE-----NSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNE---FKVPYLIVGKSL--- 116 (305)
T ss_dssp HHHHHHHHHTCEEEECCCS-----SHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHH---TTCCEEEESCCC---
T ss_pred HHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHHHHHHH---cCCCEEEECCCC---
Confidence 4456677889988764421 1111 1222233578999999865433334444444 367899999764
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
... ++.. +..+.+ .+...++.|.+. ..++|.++.+.... .-+.+.|++.|..+.. ++...
T Consensus 117 -~~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~ 184 (305)
T 3huu_A 117 -NYE------NIIH-IDNDNIDAAYQLTQYLYHL--GHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC--VVIKS 184 (305)
T ss_dssp -SST------TCCE-EECCHHHHHHHHHHHHHHT--TCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE--EEECS
T ss_pred -ccc------CCcE-EEeCHHHHHHHHHHHHHHC--CCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc--EEecC
Confidence 111 2322 223322 234455666654 34689999876542 3466788899988766 22221
Q ss_pred eCC--CCcHHH-HHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 213 PVH--HVDQTV-LKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 213 ~~~--~~~~~~-~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
... ....++ ++...++|+|+..+-..+-..++.+.+.+. .++.+++++..-
T Consensus 185 ~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~g~~vP~di~vig~D~~~ 241 (305)
T 3huu_A 185 MNDLRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTSF 241 (305)
T ss_dssp HHHHHHHC--------CCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCSH
T ss_pred cHHHHHHHHHhhhcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEEECCcc
Confidence 111 000122 332347899999998888778777777653 478899887653
No 36
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=94.11 E-value=0.27 Score=42.54 Aligned_cols=179 Identities=6% Similarity=0.005 Sum_probs=98.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
.+.+.++++|+++.....-. ......+..+.+....+|.||+.+...-....+.+.+ .+++++++|.... .
T Consensus 29 gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~----~ 99 (287)
T 3bbl_A 29 SMVREAGAVNYFVLPFPFSE--DRSQIDIYRDLIRSGNVDGFVLSSINYNDPRVQFLLK---QKFPFVAFGRSNP----D 99 (287)
T ss_dssp HHHHHHHHTTCEEEECCCCS--STTCCHHHHHHHHTTCCSEEEECSCCTTCHHHHHHHH---TTCCEEEESCCST----T
T ss_pred HHHHHHHHcCCEEEEEeCCC--chHHHHHHHHHHHcCCCCEEEEeecCCCcHHHHHHHh---cCCCEEEECCcCC----C
Confidence 44566778899876654211 1111112222333567999999764322233344443 3678999987532 1
Q ss_pred HhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeeeCC
Q 022234 144 VIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 215 (300)
Q Consensus 144 ~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~ 215 (300)
. ++.. +..+.+ .+...++.|.+. ..++|.++.+.... .-+.+.|++.|+.+....++.. .
T Consensus 100 ~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~---~ 167 (287)
T 3bbl_A 100 W------DFAW-VDIDGTAGTRQAVEYLIGR--GHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRG---E 167 (287)
T ss_dssp C------CCCE-EEECHHHHHHHHHHHHHHH--TCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEEC---C
T ss_pred C------CCCE-EEeccHHHHHHHHHHHHHC--CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeC---C
Confidence 2 3322 222222 234445556554 34789999876432 2466778888876543222221 1
Q ss_pred CCcH---HHH-HHcC-----CCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 216 HVDQ---TVL-KQAL-----SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 216 ~~~~---~~~-~~l~-----~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
...+ +.. +.+. ++|+|+..+-..+...++.+.+.+. .++.+++++...
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~vP~di~vig~d~~~ 227 (287)
T 3bbl_A 168 GTFEVGRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLTIGTDLAIIGFDDAP 227 (287)
T ss_dssp SSHHHHHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCT
T ss_pred CCHHHHHHHHHHHHhhCCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCCEEEEEECCch
Confidence 1211 111 1123 6789999988877777777776552 367888887643
No 37
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=94.10 E-value=1 Score=38.77 Aligned_cols=174 Identities=11% Similarity=0.018 Sum_probs=96.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+++..+.. ..+.+...+.+ ....+|.||+.+...-....+.+. .++++++++....
T Consensus 29 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~----~~iPvV~~~~~~~-- 97 (285)
T 3c3k_A 29 GIEKTAEKNGYRILLCNT-----ESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII----GAFPWVQCAEYDP-- 97 (285)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH----TTSSEEEESSCCT--
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh----cCCCEEEEccccC--
Confidence 445567788988765432 12322212222 346799999976433223334343 3678999986532
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.. ++.. +..+.+. +..+++.|.+. ..++|.++.+.... .-+.+.|++.|..+. ++...
T Consensus 98 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~ 163 (285)
T 3c3k_A 98 --LS------TVSS-VSIDDVAASEYVVDQLVKS--GKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS---RISYA 163 (285)
T ss_dssp --TS------SSCE-EECCHHHHHHHHHHHHHHT--TCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC---EEEEC
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHc--CCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce---EeecC
Confidence 12 3221 2223222 34455666554 34789999887532 236677888887765 23222
Q ss_pred eCCCCcHHHHHH---c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 213 PVHHVDQTVLKQ---A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 213 ~~~~~~~~~~~~---l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
.......+..+. + .++|+|+..+-..+...++.+.+.+. .++.+++++..
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vvg~d~~ 222 (285)
T 3c3k_A 164 ENLDYMAGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALTESGLSIPQDVAVVGFDGV 222 (285)
T ss_dssp SSSSHHHHHHHHHHHHSSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CChHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEeCCh
Confidence 211111122222 2 26899999988877777777766542 36677777553
No 38
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=93.92 E-value=0.19 Score=44.77 Aligned_cols=178 Identities=10% Similarity=-0.000 Sum_probs=99.0
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHH---HhhhcCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNDTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~---~~l~~~~~d~ivFTS~~-av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
.+.+.++++|++++.+.. ..+.+... +.+....+|.||+.+.. ....+.+.+.+. +++++++|.....
T Consensus 84 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~~ 155 (338)
T 3dbi_A 84 HAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAH---SQPIMVLNRRLRK 155 (338)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHC---SSCEEEESSCCSS
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcC---CCCEEEEcCCCCC
Confidence 455677788998776542 12222111 22234689999997643 223344444432 5688888865321
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
. ++.. +..+.+ .+...++.|.+. ..++|.++.|... ..-+.+.|++.|..+....++..
T Consensus 156 ----~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 222 (338)
T 3dbi_A 156 ----N------SSHS-VWCDHKQTSFNAVAELINA--GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANG 222 (338)
T ss_dssp ----S------GGGE-ECBCHHHHHHHHHHHHHHT--TCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECC
T ss_pred ----C------CCCE-EEEChHHHHHHHHHHHHHC--CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeC
Confidence 1 2211 122222 234455566554 3478999988754 23466778889977643333222
Q ss_pred eeCCCCc----HHHHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 212 EPVHHVD----QTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 212 ~~~~~~~----~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
....... .++++...++|+|+..+-..+-..++.+.+.+. .++.++.++..
T Consensus 223 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vvg~D~~ 280 (338)
T 3dbi_A 223 KWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDI 280 (338)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred CCCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCCCCCCeEEEEECCh
Confidence 1111111 112222247899999998888777777776653 47888888754
No 39
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=93.85 E-value=0.32 Score=42.13 Aligned_cols=176 Identities=6% Similarity=-0.006 Sum_probs=98.7
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHH---HhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~---~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+++..++. ..+.+... +.+....+|.||+.+...-....+.+.+ .+++++++|....
T Consensus 37 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 106 (289)
T 2fep_A 37 GIEDIATMYKYNIILSNS-----DQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKR---SPVPIVLAASVEE-- 106 (289)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHH---SSSCEEEESCCCT--
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHh---cCCCEEEEccccC--
Confidence 445667788998765421 12322211 2223468999999764322333344443 3678999987532
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCC-C-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~-~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. ++.. +..+.+ .+...++.|.+. ..++|.++.+.. . ..-+.+.|++.|..+....++..
T Consensus 107 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 175 (289)
T 2fep_A 107 --QE------ETPS-VAIDYEQAIYDAVKLLVDK--GHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEG 175 (289)
T ss_dssp --TC------CSCE-EECCHHHHHHHHHHHHHHT--TCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEEC
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeC
Confidence 12 3322 222322 234455666654 347899998875 3 23467788889976643223321
Q ss_pred eeCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 212 EPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 212 ~~~~~~~~---~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
....+ +..+. + .++|+|+..+-..+...++.+.+.+. .++.++.++...
T Consensus 176 ---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~di~vvg~D~~~ 234 (289)
T 2fep_A 176 ---DYTYDSGLEALQHLMSLDKKPTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTR 234 (289)
T ss_dssp ---CSCHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCG
T ss_pred ---CCCHHHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHcCCCCCCCeEEEEECChH
Confidence 11221 12222 2 36899999988877777777766552 367788876543
No 40
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=93.76 E-value=0.2 Score=43.60 Aligned_cols=178 Identities=8% Similarity=0.045 Sum_probs=99.2
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCch---hHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~---~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
..+.+.++++|+.++.+..- .+.+ .+.+.+....+|.||+.+...-....+.+.+ .+++++++|.....
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~ 103 (295)
T 3hcw_A 32 LGISETCNQHGYGTQTTVSN-----NMNDLMDEVYKMIKQRMVDAFILLYSKENDPIKQMLID---ESMPFIVIGKPTSD 103 (295)
T ss_dssp HHHHHHHHTTTCEEEECCCC-----SHHHHHHHHHHHHHTTCCSEEEESCCCTTCHHHHHHHH---TTCCEEEESCCCSS
T ss_pred HHHHHHHHHCCCEEEEEcCC-----CChHHHHHHHHHHHhCCcCEEEEcCcccChHHHHHHHh---CCCCEEEECCCCcc
Confidence 34566778889988755421 1111 1222233578999999765433344444444 36789999865321
Q ss_pred HHHHHhhccCCCcccccc-CCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 022234 140 IFEEVIQSSKCSLDVAFS-PSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~-p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
. +.....+ .+.+ .+...++.|.+. ..++|.++.+... ..-+.+.|+++|..+. ++.
T Consensus 104 ~----------~~~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~---~~~ 168 (295)
T 3hcw_A 104 I----------DHQFTHIDNDNILASENLTRHVIEQ--GVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQ---IIE 168 (295)
T ss_dssp G----------GGGSCEEEECHHHHHHHHHHHHHHH--CCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEE---EEE
T ss_pred c----------cCCceEEecCcHHHHHHHHHHHHHc--CCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCee---EEe
Confidence 1 1011122 2222 234445556554 3479999987654 2356677899998765 222
Q ss_pred eeeCCCCc----HHHHHHcC---CCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 211 TEPVHHVD----QTVLKQAL---SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 211 ~~~~~~~~----~~~~~~l~---~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
........ .++++... ++++|+..+-..+-..++.+.+.+. .++.++.++..-
T Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D~~~ 231 (295)
T 3hcw_A 169 TSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFNDSY 231 (295)
T ss_dssp ECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCCTTTTEEEEEECCSH
T ss_pred ccCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHHHHHHHHHHcCCCCCCceEEEEeCChh
Confidence 21111111 11222222 6889888888777777777776653 477888887643
No 41
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=93.71 E-value=0.25 Score=42.86 Aligned_cols=193 Identities=9% Similarity=0.007 Sum_probs=103.0
Q ss_pred CeEEEeCCCCch-------HHHHHHHHhCCCCEEEeeeeEeeeCCCc-hh---HHHhhhcCCccEEEEeChHHHHHHHHH
Q 022234 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDT-DR---LSSVLNDTIFDWIIITSPEAGSVFLEA 119 (300)
Q Consensus 51 ~~VlitR~~~~~-------~~l~~~L~~~G~~v~~~P~i~~~~~~~~-~~---l~~~l~~~~~d~ivFTS~~av~~~~~~ 119 (300)
.+|.+.-+...+ ..+.+.++++|+++...+. ....+. .. ..+.+....+|.||+.+...-....+.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 85 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG---CGESTPREQALEAVRFLIGRDCDGVVVISHDLHDEDLDE 85 (290)
T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC---CSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC---CCchhhhhhHHHHHHHHHhcCccEEEEecCCCCHHHHHH
Confidence 456655554322 3445567788998765432 111111 11 212223468999999764322333344
Q ss_pred HHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhH
Q 022234 120 WKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNE 191 (300)
Q Consensus 120 l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~ 191 (300)
+.+. +++++++|..... . ++.. +..+.+ .+..+++.|.+. ..++|.++.+... ..-
T Consensus 86 l~~~---~iPvV~~~~~~~~----~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 86 LHRM---HPKMVFLNRAFDA----L------PDAS-FCPDHRRGGELAAATLIEH--GHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp HHHH---CSSEEEESSCCTT----S------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEEESCTTCHHHHHHHHH
T ss_pred Hhhc---CCCEEEEccccCC----C------CCCE-EEeCcHHHHHHHHHHHHHC--CCceEEEEeCCCCCccHHHHHHH
Confidence 4432 5789999865321 1 2211 222222 234455666654 3478999988743 224
Q ss_pred HHHHHHhCCCeeEEEEeeeeeeCCCCc----HHHHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 192 IEEGLSNRGFEVVRLNTYTTEPVHHVD----QTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 192 L~~~L~~~G~~v~~~~vY~~~~~~~~~----~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
+.+.|++.|..+....++......... .++++.-.++|+|+..+-..+...++.+.+.+. .++.+++++..
T Consensus 150 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~di~vvg~D~~ 227 (290)
T 2rgy_A 150 FFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCANDTMAVSALARFQQLGISVPGDVSVIGYDDD 227 (290)
T ss_dssp HHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred HHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeCCc
Confidence 567788888765432233211111101 112222247899999988877777777776552 36778887653
No 42
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=93.71 E-value=0.12 Score=44.34 Aligned_cols=174 Identities=12% Similarity=0.008 Sum_probs=95.2
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHHHHHHHH-HHHHcCCCCceEEEEccchH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEAGSVFLE-AWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~av~~~~~-~l~~~~~~~~~i~aVG~~Ta 138 (300)
..+.+.++++|+.++.++. ..+.+. +.+.+....+|.||+.+.+ ....+ .+.+ .+++++++|....
T Consensus 28 ~gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dgiIi~~~~--~~~~~~~l~~---~~iPvV~~~~~~~ 97 (277)
T 3e61_A 28 RGVEDVALAHGYQVLIGNS-----DNDIKKAQGYLATFVSHNCTGMISTAFN--ENIIENTLTD---HHIPFVFIDRINN 97 (277)
T ss_dssp HHHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECGGG--HHHHHHHHHH---C-CCEEEGGGCC-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCC--hHHHHHHHHc---CCCCEEEEeccCC
Confidence 4556677888998875432 112221 1122234689999998733 22334 4444 3678999987653
Q ss_pred HHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
..- +. +.+. ...+..+++.|.+. ..++|+++.+.... .-+.+.|++.|..+.. ++..
T Consensus 98 ~~~--~V-----~~D~-----~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~~ 161 (277)
T 3e61_A 98 EHN--GI-----STNH-----FKGGQLQAEVVRKG--KGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM--LEAT 161 (277)
T ss_dssp ---------------H-----HHHHHHHHHHHHHT--TCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE--EEGG
T ss_pred CCC--eE-----Eech-----HHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc--eecC
Confidence 221 10 2211 12244555666654 34689999877542 3466788888887765 2222
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 212 EPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 212 ~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
........+.+..-.++|+|+..+-..+...+..+.+.+. .++.+++++..
T Consensus 162 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~ 215 (277)
T 3e61_A 162 LLDNDKKFIDLIKELSIDSIICSNDLLAINVLGIVQRYHFKVPAEIQIIGYDNI 215 (277)
T ss_dssp GGGSHHHHHHHHHHHTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CCCHHHHHHHhhcCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeCCc
Confidence 1111111111222247899999998888888887777653 36777777653
No 43
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=93.67 E-value=0.084 Score=47.21 Aligned_cols=182 Identities=12% Similarity=-0.016 Sum_probs=101.4
Q ss_pred CeEEEeCCCCch-------HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc
Q 022234 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA 123 (300)
Q Consensus 51 ~~VlitR~~~~~-------~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~ 123 (300)
++|.+.-+...+ ..+.+.++++|++++.+..-. .. ......+.+....+|.||+.+. +...
T Consensus 65 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~--~~~~~~~~l~~~~vdGiIi~~~---------~~~~ 132 (333)
T 3jvd_A 65 ALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-VQ--AQDVVMESLISIQAAGIIHVPV---------VGSI 132 (333)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-HH--HHHHHHHHHHHHTCSEEEECCC---------TTCC
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-hH--HHHHHHHHHHhCCCCEEEEcch---------HHHH
Confidence 456655444322 334556777899887654322 10 0011112223467999999887 2222
Q ss_pred CCCCceEEEEccchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHH
Q 022234 124 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEG 195 (300)
Q Consensus 124 ~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~ 195 (300)
...+++++.+|.... .. ++... ..+.+ .+...++.|.+. ..++|.++.+.... .-+.+.
T Consensus 133 ~~~~iPvV~~~~~~~----~~------~~~~V-~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~a 199 (333)
T 3jvd_A 133 APEGIPMVQLTRGEL----GP------GFPRV-LCDDEAGFFQLTESVLGG--SGMNIAALVGEESLSTTQERMRGISHA 199 (333)
T ss_dssp C-CCSCEEEECC--------C------CSCEE-EECHHHHHHHHHHHHCCS--SSCEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred hhCCCCEEEECccCC----CC------CCCEE-EEChHHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHHH
Confidence 234789999997542 12 44322 22222 244556666654 35799999887542 245677
Q ss_pred HHhCCCeeEEEEeeeeeeCCCCcH---HHHHH-c--CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 196 LSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 196 L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~-l--~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
|++.|.. +.+ .. .....+ +.... + ..+|+|+..+-..+-..+..+.+.+. .++.++.++..-
T Consensus 200 l~~~g~~---~~~-~~--~~~~~~~~~~~~~~ll~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvig~D~~~ 270 (333)
T 3jvd_A 200 ASIYGAE---VTF-HF--GHYSVESGEEMAQVVFNNGLPDALIVASPRLMAGVMRAFTRLNVRVPHDVVIGGYDDPE 270 (333)
T ss_dssp HHHTTCE---EEE-EE--CCSSHHHHHHHHHHHHHTCCCSEEEECCHHHHHHHHHHHHHTTCCTTTTCEEEEESCCG
T ss_pred HHHCCCC---EEE-ec--CCCCHHHHHHHHHHHhcCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEECChH
Confidence 8889876 222 10 111221 11111 2 23899999998888777777777653 478888887654
No 44
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=93.66 E-value=0.16 Score=43.35 Aligned_cols=174 Identities=9% Similarity=0.040 Sum_probs=99.6
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHH---HhhhcCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEccchH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNDTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~---~~l~~~~~d~ivFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
..+.+.++++|+++..+.. ..+.+... +.+....+|+||+.+... .....+.+.+ .+++++++|....
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 93 (272)
T 3o74_A 22 KQLEQGARARGYQLLIASS-----DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQD---KGLPVIAIDRRLD 93 (272)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHH---TTCCEEEESSCCC
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHH---cCCCEEEEccCCC
Confidence 3455677888998876542 11222211 222346899999987551 1333344444 3678899986542
Q ss_pred HHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~ 210 (300)
.. ++.. +..+.+ .+..+++.|.+. ..+++.++.+.... .-+.+.|++.|..+.. ++.
T Consensus 94 ----~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~ 158 (272)
T 3o74_A 94 ----PA------HFCS-VISDDRDASRQLAASLLSS--APRSIALIGARPELSVSQARAGGFDEALQGYTGEVRR--YQG 158 (272)
T ss_dssp ----TT------TCEE-EEECHHHHHHHHHHHHHTT--CCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEE--EEE
T ss_pred ----cc------ccCE-EEEchHHHHHHHHHHHHHC--CCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChhe--eec
Confidence 12 3322 122222 234555666654 34799999876542 3456678888865422 222
Q ss_pred eeeCCCCcH-------HHHHHcC-CCCEEEEEChHHHHHHHHHhcccCC--CCceEEEeCHH
Q 022234 211 TEPVHHVDQ-------TVLKQAL-SIPVVAVASPSAVRSWVNLISDTEQ--WSNSVACIGET 262 (300)
Q Consensus 211 ~~~~~~~~~-------~~~~~l~-~~d~IvftS~s~v~~~~~~~~~~~~--~~~~vv~IG~~ 262 (300)
.....+ ++++.-. ++++|+..+-..+...+..+.+.+. .++.+++++..
T Consensus 159 ---~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~vp~di~vvg~d~~ 217 (272)
T 3o74_A 159 ---EAFSRECGQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPVDSRQLQLGTFGDN 217 (272)
T ss_dssp ---SSSSHHHHHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCGGGCCCEEEEESCC
T ss_pred ---CCCCHHHHHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCCCccceEEEEeCCh
Confidence 112221 1222224 6899999998888888887777653 47888888764
No 45
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=93.54 E-value=0.28 Score=44.09 Aligned_cols=176 Identities=8% Similarity=0.024 Sum_probs=98.8
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.++.... ..+.+...+. +....+|.||+.....-....+.+.+ .+++++++|....
T Consensus 91 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~-- 160 (355)
T 3e3m_A 91 SLTDVLEQGGLQLLLGYT-----AYSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLLQR---ASIPIVEIWEKPA-- 160 (355)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHHHH---CCSCEEEESSCCS--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEECCccC--
Confidence 455677788988865432 1122221122 22468999999865543444444444 3678888875421
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCCh--------hHHHHHHHhCCCeeEE-EEeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS--------NEIEEGLSNRGFEVVR-LNTYT 210 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~--------~~L~~~L~~~G~~v~~-~~vY~ 210 (300)
.. ... .+..+.+. +...++.|.+. ..++|.++.+.... .-+.+.|+++|..+.. +.++.
T Consensus 161 --~~------~~~-~V~~D~~~~~~~a~~~L~~~--G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 229 (355)
T 3e3m_A 161 --HP------IGH-TVGFSNERAAYDMTNALLAR--GFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGA 229 (355)
T ss_dssp --SC------SSE-EEECCHHHHHHHHHHHHHHT--TCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESC
T ss_pred --CC------CCC-EEEeChHHHHHHHHHHHHHC--CCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEec
Confidence 11 221 12233222 34455566554 34689998875432 2466788999988763 22222
Q ss_pred eeeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 211 TEPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 211 ~~~~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
. ....+ ++++...++|+|+..+-..+-..+..+.+.+. .++.++.++..-
T Consensus 230 ~---~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvigfD~~~ 289 (355)
T 3e3m_A 230 P---PLSIEDGVAAAELILQEYPDTDCIFCVSDMPAFGLLSRLKSIGVAVPEQVSVVGFGNFE 289 (355)
T ss_dssp S---SCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEECSSCCH
T ss_pred C---CCCHHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCCceEEEEECChH
Confidence 1 11111 12222257899999998887777777776553 377788876543
No 46
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=93.53 E-value=0.38 Score=41.45 Aligned_cols=177 Identities=10% Similarity=-0.001 Sum_probs=97.0
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+++..+.. ..+.+...+. +....+|.||+.+...-....+.+.+. .++++++++.....
T Consensus 42 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~--~~iPvV~~~~~~~~- 113 (296)
T 3brq_A 42 HAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDA--HSQPIMVLNRRLRK- 113 (296)
T ss_dssp HHHHHHHHTTCEEEEECC-----TTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHT--CSSCEEEESCCCSS-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhc--CCCCEEEEccccCC-
Confidence 445667788988664422 1222211112 224679999987653222333444441 36789999865311
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
. ++.. +..+.+. +..+++.|.+. +.++|.++.+.... .-+.+.|+++|..+....++..
T Consensus 114 ---~------~~~~-V~~d~~~~~~~a~~~l~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~- 180 (296)
T 3brq_A 114 ---N------SSHS-VWCDHKQTSFNAVAELINA--GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANG- 180 (296)
T ss_dssp ---S------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECC-
T ss_pred ---C------CCCE-EEEchHHHHHHHHHHHHHC--CCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeC-
Confidence 1 2211 2222222 34455666654 34789999887532 2466778888877643223321
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 213 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 213 ~~~~~~~---~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
....+ +..+. + .++|+|+..+-..+..++..+.+.+. .++.+++++...
T Consensus 181 --~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 239 (296)
T 3brq_A 181 --KWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDIA 239 (296)
T ss_dssp --CSSHHHHHHHHHHHHTC--CCSEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCCT
T ss_pred --CCChhHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEeecCch
Confidence 11211 12222 2 36899999998878777777766542 367788886543
No 47
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=93.51 E-value=0.67 Score=39.65 Aligned_cols=174 Identities=10% Similarity=0.045 Sum_probs=96.1
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+++..+.. ..+.+. ..+.+....+|.||+.+... ....+.+.+ .+++++++|....
T Consensus 28 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~l~~---~~iPvV~i~~~~~-- 96 (276)
T 3jy6_A 28 GISSILESRGYIGVLFDA-----NADIEREKTLLRAIGSRGFDGLILQSFSN-PQTVQEILH---QQMPVVSVDREMD-- 96 (276)
T ss_dssp HHHHHHHTTTCEEEEEEC-----TTCHHHHHHHHHHHHTTTCSEEEEESSCC-HHHHHHHHT---TSSCEEEESCCCT--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCCc-HHHHHHHHH---CCCCEEEEecccC--
Confidence 455667888988876542 112221 11222357899999998877 555555544 3688999987542
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-hhHHHH---HHHhCCCeeEEEEeeeeeeCC
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-SNEIEE---GLSNRGFEVVRLNTYTTEPVH 215 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-~~~L~~---~L~~~G~~v~~~~vY~~~~~~ 215 (300)
.. ++.. +..+.+ .+..+++.|.+. ..++|.++.+... .....+ .+.+. +.+...+......
T Consensus 97 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~gf~~~---l~~~~~~~~~~~~ 162 (276)
T 3jy6_A 97 --AC------PWPQ-VVTDNFEAAKAATTAFRQQ--GYQHVVVLTSELELSRTRQERYRGILAA---AQDVDVLEVSESS 162 (276)
T ss_dssp --TC------SSCE-EECCHHHHHHHHHHHHHTT--TCCEEEEEEECSTTCHHHHHHHHHHHTT---CSEEEEEEECSSS
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHc--CCCeEEEEecCCCCCchHHHHHHHHHHH---HHhCCcEEEeccc
Confidence 22 3322 222222 244556666654 3579999988765 322222 22221 1111111111111
Q ss_pred CCc----HHHHHHc---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 216 HVD----QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 216 ~~~----~~~~~~l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
... ..+.+.+ .++|+|+.++-..+...++.+.+.+. .++.+++++..
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~ 219 (276)
T 3jy6_A 163 YNHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISGLIDNQTVTATGFADT 219 (276)
T ss_dssp CCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHSSSCCSSSEEEEEBCCC
T ss_pred cCCcHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHcCCCCCCcEEEEEECCh
Confidence 111 1122222 47899999999888888887777653 36778888754
No 48
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=93.44 E-value=0.3 Score=41.74 Aligned_cols=180 Identities=12% Similarity=0.055 Sum_probs=93.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
.+.+.++++|++++..+.-. ......+..+.+....+|.||+.+...-... +......+++++++|.....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~~~~~iPvV~~~~~~~~---- 90 (276)
T 2h0a_A 20 GIEGVLLEQRYDLALFPILS--LARLKRYLENTTLAYLTDGLILASYDLTERF---EEGRLPTERPVVLVDAQNPR---- 90 (276)
T ss_dssp HHHHHHGGGTCEEEECCCCS--CCCCC---------CCCSEEEEESCCCC---------CCSCSSCEEEESSCCTT----
T ss_pred HHHHHHHHCCCEEEEEeCCC--chhhHHHHHHHHHhCCCCEEEEecCCCCHHH---HHHHhhcCCCEEEEeccCCC----
Confidence 44566778898877654311 0011111112223467999999865432222 22222347899999875321
Q ss_pred HhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCC-C---h--------hHHHHHHHhCCCeeEEEEeee
Q 022234 144 VIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK-A---S--------NEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 144 ~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~-~---~--------~~L~~~L~~~G~~v~~~~vY~ 210 (300)
. . .+..+.+ .+..+++.|.+. ..++|.++.+.. . . .-+.+.|++.|..+....++.
T Consensus 91 ~------~---~V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~ 159 (276)
T 2h0a_A 91 Y------D---SVYLDNRLGGRLAGAYLARF--PGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYI 159 (276)
T ss_dssp S------E---EEEECSHHHHHHHHHHHTTS--SSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEE
T ss_pred C------C---EEEEccHHHHHHHHHHHHHc--CCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeee
Confidence 1 1 1122222 244556667654 347999998765 3 1 235577888887654322222
Q ss_pred eeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 211 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 211 ~~~~~~~~~~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.........+..+. + .++|+|+..+-..+...++.+.+.+. .++.+++++...
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 219 (276)
T 2h0a_A 160 TRHSQEGGRLALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLTPGRDVRVLGFDGHP 219 (276)
T ss_dssp ECSSHHHHHHHHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCTTTTSEEEEEESCCT
T ss_pred cCCChHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc
Confidence 21111111112222 2 25889998888888888887776652 367788886644
No 49
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=93.32 E-value=0.038 Score=47.90 Aligned_cols=171 Identities=9% Similarity=0.008 Sum_probs=98.2
Q ss_pred HHHHHHHHhCCCC-EEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccc-h
Q 022234 63 GKLIKALAKHRID-CLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-T 137 (300)
Q Consensus 63 ~~l~~~L~~~G~~-v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~-T 137 (300)
..+.+.++++|+. ++..+.- .+.+. ..+.+....+|.||+.+ ..+......+++++.+|.. .
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~--------~~~~~~~~~~iPvV~~~~~~~ 96 (277)
T 3hs3_A 30 DGIQEVIQKEGYTALISFSTN-----SDVKKYQNAIINFENNNVDGIITSA--------FTIPPNFHLNTPLVMYDSANI 96 (277)
T ss_dssp HHHHHHHHHTTCEEEEEECSS-----CCHHHHHHHHHHHHHTTCSEEEEEC--------CCCCTTCCCSSCEEEESCCCC
T ss_pred HHHHHHHHHCCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEcc--------hHHHHHHhCCCCEEEEccccc
Confidence 3455677788998 6544321 12221 11222347899999998 1122222347899999875 3
Q ss_pred HHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEee
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY 209 (300)
. .. ++ . +..+.+ .+...++.|. . ..++|.++.|... ..-+.+.|++.|..+... ++
T Consensus 97 ~----~~------~~-~-V~~D~~~~g~~a~~~L~-~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~ 160 (277)
T 3hs3_A 97 N----DD------IV-R-IVSNNTKGGKESIKLLS-K--KIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ET 160 (277)
T ss_dssp C----SS------SE-E-EEECHHHHHHHHHHTSC-T--TCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-EC
T ss_pred C----CC------CE-E-EEEChHHHHHHHHHHHH-h--CCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-Cc
Confidence 1 12 33 2 222222 2445566666 3 4579999988753 234667889999887665 43
Q ss_pred eeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 210 TTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
..........++++...++++|+..+-..+-..++.+.+.+. .++.+++++..
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~d~~ 216 (277)
T 3hs3_A 161 PENNPYISAQSALNKSNQFDAIITVNDLYAAEIIKEAKRRNLKIPDDFQLVGYDNN 216 (277)
T ss_dssp CSSCHHHHHHHHHHTGGGCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred cCCchHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeeCCc
Confidence 321110001112222247899999998888777777776653 36777777654
No 50
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=93.28 E-value=0.23 Score=42.35 Aligned_cols=185 Identities=14% Similarity=0.071 Sum_probs=103.3
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchh----HHHhhhcCC-ccEEEEeCh--HHHHHHHHHHHHcCCCCceEEEEcc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDR----LSSVLNDTI-FDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~----l~~~l~~~~-~d~ivFTS~--~av~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
..+.+.++++|+++..+..- ...+.+. +...+ ... +|.||+... .......+.+.+. +++++.+|.
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~l~-~~~~vdgii~~~~~~~~~~~~~~~~~~~---~ipvV~~~~ 92 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTK---DDGDIAGQIQILSYHL-SQAPPDALILAPNSAEDLTPSVAQYRAR---NIPVLVVDS 92 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHH-HHSCCSEEEECCSSTTTTHHHHHHHHHT---TCCEEEESS
T ss_pred HHHHHHHHHcCCEEEEECCC---CCCCHHHHHHHHHHHH-HhCCCCEEEEeCCCHHHHHHHHHHHHHC---CCcEEEEec
Confidence 34566777889887765421 1112221 22222 345 999999873 3445555555543 678999986
Q ss_pred chHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCC--CCCEEEEEcCCCCh-------hHHHHHHHhC-CCeeE
Q 022234 136 GTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGK--KKCTVLYPASAKAS-------NEIEEGLSNR-GFEVV 204 (300)
Q Consensus 136 ~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~--~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~ 204 (300)
... .. +....+..+.+ .+..+++.|.+... +.++++++.+.... .-+.+.|++. |+.+.
T Consensus 93 ~~~----~~------~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 162 (276)
T 3ksm_A 93 DLA----GD------AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRII 162 (276)
T ss_dssp CCS----SS------CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred CCC----CC------CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEE
Confidence 541 11 22122223322 23445555555422 34689999886532 3466677777 76554
Q ss_pred EEEeeeeeeCCCCcHH-------HHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHH--HHHHHH
Q 022234 205 RLNTYTTEPVHHVDQT-------VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT--ASAAKR 269 (300)
Q Consensus 205 ~~~vY~~~~~~~~~~~-------~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~T--a~~l~~ 269 (300)
. ++. .....+. +++...++|+|+.++-..+...++.+.+.+. .++.+++++..- .+.+..
T Consensus 163 ~--~~~---~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~p~di~vig~d~~~~~~~~~~~ 232 (276)
T 3ksm_A 163 A--APY---AGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVAIRQSGMSKQFGFIGFDQTEELEAAMYA 232 (276)
T ss_dssp E--CCB---CCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHHHHHHTTCTTSSEEEEESCCHHHHHHHHT
T ss_pred E--Eec---CCCcHHHHHHHHHHHHHhCCCceEEEECCchhhhHHHHHHHHcCCCCCeEEEEeCCCHHHHHHHHc
Confidence 1 111 1222211 2222247899999998888888887777654 478899887543 234543
No 51
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=93.10 E-value=3.5 Score=35.44 Aligned_cols=192 Identities=12% Similarity=0.070 Sum_probs=101.0
Q ss_pred HHHHHHHHhCCC-CEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccc
Q 022234 63 GKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 63 ~~l~~~L~~~G~-~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
..+.+.++++|+ ++..... ..+.+...+.+ ....+|.||+.+.. ......+.+.+ .++++++++..
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 93 (309)
T 2fvy_A 22 KAIEQDAKAAPDVQLLMNDS-----QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG---QNVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHHTCTTEEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHT---TTCCEEEESSC
T ss_pred HHHHHHHHhcCCeEEEEecC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHH---CCCcEEEecCC
Confidence 345567778897 6544321 12322211222 24679999997643 23444454543 36789999875
Q ss_pred hHHH-HHHHhhccCCCccccccCCCC-cHHHHHHhcccC----------CCCCCEEEEEcCCCC-------hhHHHHHHH
Q 022234 137 TASI-FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN----------GKKKCTVLYPASAKA-------SNEIEEGLS 197 (300)
Q Consensus 137 Ta~~-L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~----------~~~~~~vL~~rg~~~-------~~~L~~~L~ 197 (300)
.... +... .++.. +....+ .+..+++.|.+. ....++|+++.+... ..-+.+.|+
T Consensus 94 ~~~~~~~~~-----~~~~~-V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~ 167 (309)
T 2fvy_A 94 PSRKALDSY-----DKAYY-VGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELN 167 (309)
T ss_dssp CCHHHHHTC-----TTEEE-EECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred CCccccccc-----CccEE-EecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHH
Confidence 4321 1111 01211 222222 233344444441 112347888887643 224667888
Q ss_pred hCCCeeEEEEeeeeeeCCCCcH---HHHHH-c---C--CCCEEEEEChHHHHHHHHHhcccCCC-CceEEEeCHH-HHHH
Q 022234 198 NRGFEVVRLNTYTTEPVHHVDQ---TVLKQ-A---L--SIPVVAVASPSAVRSWVNLISDTEQW-SNSVACIGET-TASA 266 (300)
Q Consensus 198 ~~G~~v~~~~vY~~~~~~~~~~---~~~~~-l---~--~~d~IvftS~s~v~~~~~~~~~~~~~-~~~vv~IG~~-Ta~~ 266 (300)
++|..+....++.. ....+ +..+. + . ++++|+..+-..+..+++.+.+.+ . ++.+++++.. .+..
T Consensus 168 ~~g~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g-~~di~vig~d~~~~~~~ 243 (309)
T 2fvy_A 168 DKGIKTEQLQLDTA---MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDALPEALA 243 (309)
T ss_dssp HTTCCEEEEEEEEC---TTCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTT-CTTSCEECSBCCHHHHH
T ss_pred hcCCceEEEEEecC---CCCHHHHHHHHHHHHHhCCCCCccEEEECCchhHHHHHHHHHHcC-CCCceEEecCCCHHHHH
Confidence 99988765544432 12221 12222 2 2 579999998887777887777665 4 6788887543 3333
Q ss_pred HHHcCC
Q 022234 267 AKRLGL 272 (300)
Q Consensus 267 l~~~G~ 272 (300)
+.+.|.
T Consensus 244 ~~~~g~ 249 (309)
T 2fvy_A 244 LVKSGA 249 (309)
T ss_dssp HHHHTS
T ss_pred HHHcCC
Confidence 333353
No 52
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=92.91 E-value=0.19 Score=43.32 Aligned_cols=177 Identities=8% Similarity=-0.004 Sum_probs=95.8
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+++...+. ..+.+...+. +....+|.||+.+...-....+.+.+ ..+++++++|....
T Consensus 28 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~-- 98 (289)
T 1dbq_A 28 AVEKNCFQKGYTLILGNA-----WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA-- 98 (289)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH--TTTSCEEEEECSSC--
T ss_pred HHHHHHHHcCCeEEEEcC-----CCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHh--ccCCCEEEEccCCC--
Confidence 344566778988765321 1232221122 22467999998765432233344433 13678899886431
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.. ++...+..+.+ .+..+++.|.+. ..++|+++.+... ..-+.+.|+++|..+....++..
T Consensus 99 --~~------~~~~~V~~d~~~~~~~~~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~- 167 (289)
T 1dbq_A 99 --KA------DFTDAVIDNAFEGGYMAGRYLIER--GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQG- 167 (289)
T ss_dssp --CS------SSCEEEEECHHHHHHHHHHHHHHT--TCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCC-
T ss_pred --cc------CcCCEEEeCcHHHHHHHHHHHHHC--CCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeC-
Confidence 11 21111222222 234555666654 3478999987642 23467788888876543222211
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 213 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 213 ~~~~~~~---~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
....+ +..+. + .++|+|+..+-..+..+++.+.+.+. .++.+++++..
T Consensus 168 --~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~ 225 (289)
T 1dbq_A 168 --DFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNV 225 (289)
T ss_dssp --CSSHHHHHHHHHHHHTSSSCCSEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred --CCCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeCCc
Confidence 11211 12222 2 36899999988877777777776552 36778888654
No 53
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=92.68 E-value=1.6 Score=37.91 Aligned_cols=213 Identities=12% Similarity=0.035 Sum_probs=109.0
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.+.+.++++|++++.... ..+.+...+.+ ....+|.||+.+... .....+.+.+ .++++++++....
T Consensus 23 gi~~~a~~~g~~l~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 94 (306)
T 2vk2_A 23 VAKSEAEKRGITLKIADG-----QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD---AEIPVFLLDRSID 94 (306)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHH---TTCCEEEESSCCC
T ss_pred HHHHHHHHcCCEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHH---CCCCEEEecCCCC
Confidence 345667788988765431 12222211222 235799999976542 2334444444 3578899886431
Q ss_pred HHHHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCC-CCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKK-KCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~-~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY 209 (300)
..-... .+.. +..+.+. +..+++.|.+.... .++|.++.+... ..-+.+.|++.|. +..+.++
T Consensus 95 ~~~~~~------~~~~-V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~ 166 (306)
T 2vk2_A 95 VKDKSL------YMTT-VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-IKIIRSQ 166 (306)
T ss_dssp CSCGGG------SSEE-EECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT-EEEEEEE
T ss_pred CCCccc------eEEE-EecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC-eEEEEec
Confidence 100000 1211 2222222 33445555543211 368999987643 2235667777774 3322222
Q ss_pred eeeeCCCCcH-------HHHHHc---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHH--HHHHHcCCCe
Q 022234 210 TTEPVHHVDQ-------TVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTA--SAAKRLGLKN 274 (300)
Q Consensus 210 ~~~~~~~~~~-------~~~~~l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta--~~l~~~G~~~ 274 (300)
. .....+ ++++.. .++|+|+..+-..+...++.+.+.+. .++.++.++.... ..+..-.+..
T Consensus 167 ~---~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~~~~~~~~~p~ltt 243 (306)
T 2vk2_A 167 S---GDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANA 243 (306)
T ss_dssp E---CTTCHHHHHHHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEEECCHHHHHHHHTTCCCE
T ss_pred c---CCCcHHHHHHHHHHHHHhCCCCCCeeEEEECCchHHHHHHHHHHHcCCCCCCCeEEEeecCCHHHHHHHHcCCceE
Confidence 2 122211 122222 36899999988877777777776553 3677888864332 2444445554
Q ss_pred EEecCCCCHHHHHHHHHHHHH
Q 022234 275 VYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 275 ~~v~~~p~~~~l~~ai~~~~~ 295 (300)
+..+..---...++.+.+.+.
T Consensus 244 v~~~~~~~g~~a~~~l~~~i~ 264 (306)
T 2vk2_A 244 SVELTPNMAGPAFDALEKYKK 264 (306)
T ss_dssp EEECCSCCHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHHHc
Confidence 444433233444555555554
No 54
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=92.48 E-value=1.5 Score=37.96 Aligned_cols=184 Identities=10% Similarity=0.028 Sum_probs=94.7
Q ss_pred HHHHHHHHhCCC---CEEEeeeeEeeeC-CCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEcc
Q 022234 63 GKLIKALAKHRI---DCLELPLIQHAQG-PDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 63 ~~l~~~L~~~G~---~v~~~P~i~~~~~-~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
..+.+.++++|+ ++... +... .+.+..... +....+|.||+++..+...+.. . ..+++++.+|.
T Consensus 21 ~gi~~~l~~~gy~g~~v~l~----~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~----~-~~~iPvV~~~~ 91 (295)
T 3lft_A 21 KGIQDGLAEEGYKDDQVKID----FMNSEGDQSKVATMSKQLVANGNDLVVGIATPAAQGLAS----A-TKDLPVIMAAI 91 (295)
T ss_dssp HHHHHHHHHTTCCGGGEEEE----EEECTTCHHHHHHHHHHHTTSSCSEEEEESHHHHHHHHH----H-CSSSCEEEESC
T ss_pred HHHHHHHHHcCCCCCceEEE----EecCCCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHH----c-CCCCCEEEEec
Confidence 345567888899 65432 1111 233322222 2356899999998766554332 1 24788888884
Q ss_pred chHHH---HHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEE
Q 022234 136 GTASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 136 ~Ta~~---L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~ 206 (300)
.--.. .... ...+-+...+-........++.|.+.....++|.++.+... ...+.+.|++.|+.+...
T Consensus 92 ~~~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~ 168 (295)
T 3lft_A 92 TDPIGANLVKDL---KKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETF 168 (295)
T ss_dssp SCTTTTTSCSCS---SCCCSSEEEEEECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cChhhcCccccc---cCCCCcEEEEECCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEE
Confidence 21100 0000 00011111111112233444555444323479999877643 245677888999888766
Q ss_pred EeeeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHHhcccC-CCCceEEEeCHH
Q 022234 207 NTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTE-QWSNSVACIGET 262 (300)
Q Consensus 207 ~vY~~~~~~~~~~~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~~-~~~~~vv~IG~~ 262 (300)
.++.. ....+..+.+ .++|+|++.+-..+-..++.+.+.. ..+++++.....
T Consensus 169 ~~~~~----~~~~~~~~~l~~~~dai~~~~D~~a~g~~~~l~~~~~~~~i~vig~d~~ 222 (295)
T 3lft_A 169 AVPST----NEIASTVTVMTSKVDAIWVPIDNTIASGFPTVVSSNQSSKKPIYPSATA 222 (295)
T ss_dssp EESSG----GGHHHHHHHHTTTCSEEEECSCHHHHHTHHHHHHHTTTTCCCEEESSHH
T ss_pred ecCCH----HHHHHHHHHHHhcCCEEEECCchhHHHHHHHHHHHHHHcCCCEEeCCHH
Confidence 55431 1122233333 5789988887655443333332221 246788888764
No 55
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=92.29 E-value=1.7 Score=33.72 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=70.3
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH-----HHHHHHH
Q 022234 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA-----GSVFLEA 119 (300)
Q Consensus 50 g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a-----v~~~~~~ 119 (300)
..+|++..+.+ +..-.+..|+..|++|+.+-.. .| .+++.+.....+.|.|.+.+..+ +..+.+.
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~--~p---~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~ 77 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL--SP---QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQK 77 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE--EC---HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHH
Confidence 35677765543 2345667899999999987662 22 23444444445788888776433 4556667
Q ss_pred HHHcCCCCceEEEEccch---------HHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 120 WKEAGTPNVRIGVVGAGT---------ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 120 l~~~~~~~~~i~aVG~~T---------a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
+++.+..++++++=|..+ .+.+++. |+...+.|. .+....++.|.
T Consensus 78 l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~------G~d~~~~~g-~~~~~~~~~l~ 131 (137)
T 1ccw_A 78 CDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDM------GYDRVYAPG-TPPEVGIADLK 131 (137)
T ss_dssp HHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHT------TCSEECCTT-CCHHHHHHHHH
T ss_pred HHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHC------CCCEEECCC-CCHHHHHHHHH
Confidence 777776678988888642 4568888 998655544 35555555554
No 56
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=92.25 E-value=1.4 Score=35.34 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=69.4
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh-----HHHHHHHH
Q 022234 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP-----EAGSVFLE 118 (300)
Q Consensus 49 ~g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~-----~av~~~~~ 118 (300)
...+|++.-+.+ +..-++..|+..|++|+.+.... ..+++.+.....+.|.|.+++. ..+..+.+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~-----p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~ 91 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ-----TPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMA 91 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC-----CHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC-----CHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHH
Confidence 456777775543 34567788999999999987642 1244544445678999988875 35667777
Q ss_pred HHHHcCCCCceEEEEccchHHH---HHHHhhccCCCccccccCCC
Q 022234 119 AWKEAGTPNVRIGVVGAGTASI---FEEVIQSSKCSLDVAFSPSK 160 (300)
Q Consensus 119 ~l~~~~~~~~~i~aVG~~Ta~~---L~~~~~~~~~G~~~~~~p~~ 160 (300)
.+++.+.+++++++-|....+. +++. |....+.|..
T Consensus 92 ~L~~~g~~~i~v~vGG~~~~~~~~~l~~~------G~d~v~~~~~ 130 (161)
T 2yxb_A 92 KLRELGADDIPVVLGGTIPIPDLEPLRSL------GIREIFLPGT 130 (161)
T ss_dssp HHHHTTCTTSCEEEEECCCHHHHHHHHHT------TCCEEECTTC
T ss_pred HHHhcCCCCCEEEEeCCCchhcHHHHHHC------CCcEEECCCC
Confidence 7777766679999989766543 6677 8875455543
No 57
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=91.96 E-value=0.65 Score=40.09 Aligned_cols=191 Identities=10% Similarity=0.002 Sum_probs=99.1
Q ss_pred CeEEEeCCCCc-------hHHHHHHHHhCCCCEEEe-eeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHH
Q 022234 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKE 122 (300)
Q Consensus 51 ~~VlitR~~~~-------~~~l~~~L~~~G~~v~~~-P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~ 122 (300)
.+|.+.-+... ...+.+.++++|+++... +.-. .+......++. +....+|.||+.+...-....+.+.+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~-l~~~~vdgiI~~~~~~~~~~~~~l~~ 86 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSA-DPEEQKHALLT-AIERPVMGILLLSIALTDDNLQLLQS 86 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-----------CHHHH-HHSSCCSEEEEESCC----CHHHHHC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHH-HHhcCCCEEEEecccCCHHHHHHHHh
Confidence 45665554322 234456677889887655 3211 11001112222 23467999998765432333343432
Q ss_pred cCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHH
Q 022234 123 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEE 194 (300)
Q Consensus 123 ~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~ 194 (300)
.+++++++|..... .+. .+..+.+ .+..+++.|.+. ..++|.++.+... ..-+.+
T Consensus 87 ---~~iPvV~~~~~~~~-----------~~~-~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (290)
T 3clk_A 87 ---SDVPYCFLSMGFDD-----------DRP-FISSDDEDIGYQATNLLINE--GHRQIGIAGIDQYPYTGRKRLAGYKK 149 (290)
T ss_dssp ---C--CEEEESCC--C-----------CSC-EEECCHHHHHHHHHHHHHTT--TCCSEEEESCCCCTTTHHHHHHHHHH
T ss_pred ---CCCCEEEEcCCCCC-----------CCC-EEEeChHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 36789999875311 111 1222222 234455666654 3478999987643 234667
Q ss_pred HHHhCCCeeEEEEeeeeeeCCCCcH---HHHHH-c--CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 195 GLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 195 ~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~-l--~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.|++.|..+....++.. ....+ +..+. + .++|+|+.++-..+...++.+.+.+. .++.+++++...
T Consensus 150 ~l~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 224 (290)
T 3clk_A 150 ALKEANIAINQEWIKPG---DYSYTSGEQAMKAFGKNTDLTGIIAASDMTAIGILNQASSFGIEVPKDLSIVSIDGTE 224 (290)
T ss_dssp HHHHTTCCCCGGGEECC---CSSHHHHHHHHHHHCTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred HHHHcCCCCCcceEEcC---CCChhhHHHHHHHHhccCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeCChH
Confidence 78888876543212211 11111 12222 3 36899999998878777777776552 367888886544
No 58
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=91.82 E-value=0.96 Score=39.98 Aligned_cols=175 Identities=7% Similarity=0.033 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHH---HhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~---~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.++.... ..+.+... +.+....+|.||+.+...-....+.+.+. +++++.+|....
T Consensus 84 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~---~iPvV~~~~~~~-- 153 (332)
T 2o20_A 84 GVDDIASMYKYNMILANS-----DNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNS---RTPVVLVGTIDG-- 153 (332)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHHHHH---CCCEEEESCCCT--
T ss_pred HHHHHHHHcCCEEEEEEC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHhC---CCCEEEEccccC--
Confidence 344566778988765421 12222111 22234679999997642212233334332 578899986532
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.. ++.. +..+.+. +...++.|.+. +.++|.++.+.... .-+.+.|+++|..+....++..
T Consensus 154 --~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~- 221 (332)
T 2o20_A 154 --DK------EIPS-VNIDYHLAAYQSTKKLIDS--GNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEG- 221 (332)
T ss_dssp --TS------CSCE-EECCHHHHHHHHHHHHHHT--TCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECS-
T ss_pred --CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeC-
Confidence 12 3322 2233222 34455566554 34789999887532 2456778889976643222221
Q ss_pred eCCCCcH---HHHHH-c-CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 213 PVHHVDQ---TVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 213 ~~~~~~~---~~~~~-l-~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
....+ +..+. + .++|+|+..+-..+-..+..+.+.+. .++.++.++..
T Consensus 222 --~~~~~~~~~~~~~ll~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~disvig~D~~ 277 (332)
T 2o20_A 222 --NYSYEQGKALAERLLERGATSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANS 277 (332)
T ss_dssp --CCSHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEESSCC
T ss_pred --CCCHHHHHHHHHHHhccCCCEEEECChHHHHHHHHHHHHcCCCCccCEEEEEeCCh
Confidence 11211 11111 2 27899999998877777777776552 36778887653
No 59
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=91.58 E-value=0.55 Score=36.65 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=66.8
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHH-----HHHHHHHhcccCCCCceEEEeC
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSA-----VRSWVNLISDTEQWSNSVACIG 260 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~-----v~~~~~~~~~~~~~~~~vv~IG 260 (300)
+...+...|+..|++|..+-.. .+.+ ++.+.. .++|+|.+++..+ ++.+.+.+++.+..++++++=|
T Consensus 19 G~~~v~~~l~~~G~~Vi~lG~~--~p~e----~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 19 GNKILDHAFTNAGFNVVNIGVL--SPQE----LFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEE--ECHH----HHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEECCCC--CCHH----HHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 3556778899999999766652 2332 233322 3788888877432 4445555655443467888777
Q ss_pred HH---------HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 261 ET---------TASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 261 ~~---------Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
.. ..+.+++.|+.. +..+..+...+++.+.+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~G~d~-~~~~g~~~~~~~~~l~~~~~ 135 (137)
T 1ccw_A 93 NIVVGKQHWPDVEKRFKDMGYDR-VYAPGTPPEVGIADLKKDLN 135 (137)
T ss_dssp SCSSSSCCHHHHHHHHHHTTCSE-ECCTTCCHHHHHHHHHHHHT
T ss_pred CCcCchHhhhhhHHHHHHCCCCE-EECCCCCHHHHHHHHHHHhC
Confidence 53 256699999986 45666788899988887764
No 60
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=91.15 E-value=0.25 Score=44.06 Aligned_cols=178 Identities=10% Similarity=0.037 Sum_probs=98.7
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.++.... ..+.+...+.+ ....+|.||+.....-....+.+.+ .+++++++|...
T Consensus 89 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~--- 157 (344)
T 3kjx_A 89 GINQVLEDTELQPVVGVT-----DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDA---AGIPVVEIMDSD--- 157 (344)
T ss_dssp HHHHHHTSSSSEEEEEEC-----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHH---CSSCEEEEEECS---
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHh---CCCCEEEEeCCC---
Confidence 455566778988754321 11222222222 3468999999875443344444444 367888886421
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCC--C------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK--A------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~--~------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
... +.. .+..+.+ .+...++.|.+. ..++|.++.+.. . ..-+.+.|+++|..+....+|..
T Consensus 158 -~~~------~~~-~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 227 (344)
T 3kjx_A 158 -GKP------VDA-MVGISHRRAGREMAQAILKA--GYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSG 227 (344)
T ss_dssp -SCC------SSE-EEEECHHHHHHHHHHHHHHH--TCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSS
T ss_pred -CCC------CCC-EEEECcHHHHHHHHHHHHHC--CCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC
Confidence 011 221 1222222 234445556554 346888888764 2 23466788999988766555432
Q ss_pred eeCCCCc----HHHHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 212 EPVHHVD----QTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 212 ~~~~~~~----~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
....... .++++...++|+|+..+-..+-..+..+.+.+. .++.++.++..
T Consensus 228 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~g~~vP~disvvg~D~~ 285 (344)
T 3kjx_A 228 GSALAKGREMTQAMLERSPDLDFLYYSNDMIAAGGLLYLLEQGIDIPGQIGLAGFNNV 285 (344)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEECCh
Confidence 1111111 112222247899999998888777777776653 46777777643
No 61
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=91.06 E-value=0.93 Score=41.63 Aligned_cols=164 Identities=10% Similarity=-0.008 Sum_probs=84.0
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
.+.+.++++|+.+..+..- .+.+.+ +.+....+|+||+.... ....+.+. ..+++++.+|......-..
T Consensus 45 gi~~~a~~~g~~~~i~~~~-----~~~~~i-~~l~~~~vDGiIi~~~~--~~~~~~l~---~~~iPvV~i~~~~~~~~~~ 113 (412)
T 4fe7_A 45 GVGEYLQASQSEWDIFIEE-----DFRARI-DKIKDWLGDGVIADFDD--KQIEQALA---DVDVPIVGVGGSYHLAESY 113 (412)
T ss_dssp HHHHHHHHHTCCEEEEECC------CC---------CCCSEEEEETTC--HHHHHHHT---TCCSCEEEEEECCSSGGGS
T ss_pred HHHHHHHhcCCCeEEEecC-----Cccchh-hhHhcCCCCEEEEecCC--hHHHHHHh---hCCCCEEEecCCccccccC
Confidence 3445667779988776521 111112 22334679999995432 22233332 2478999998754211001
Q ss_pred HhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh---------hHHHHHHHhCCCeeEEEEeeeeee
Q 022234 144 VIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS---------NEIEEGLSNRGFEVVRLNTYTTEP 213 (300)
Q Consensus 144 ~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~---------~~L~~~L~~~G~~v~~~~vY~~~~ 213 (300)
. ++.. +..+.+ .+...++.|.+. +.++|.++.+.... .-+.+.|++.|.....+.. ...
T Consensus 114 ~------~~~~-V~~D~~~~g~~a~~~L~~~--G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~ 182 (412)
T 4fe7_A 114 P------PVHY-IATDNYALVESAFLHLKEK--GVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQG--LET 182 (412)
T ss_dssp C------SSEE-EEECHHHHHHHHHHHHHHT--TCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECC--SCS
T ss_pred C------CCCE-EEeCHHHHHHHHHHHHHHc--CCceEEEecccccccccHHHHHHHHHHHHHHHcCCCcccccc--ccc
Confidence 1 2222 122222 234455666554 34799999887542 2356778888876532211 111
Q ss_pred CCCCcHH-------HHHHcCCCCEEEEEChHHHHHHHHHhccc
Q 022234 214 VHHVDQT-------VLKQALSIPVVAVASPSAVRSWVNLISDT 249 (300)
Q Consensus 214 ~~~~~~~-------~~~~l~~~d~IvftS~s~v~~~~~~~~~~ 249 (300)
....... +++...++|+|+..+-..+...+..+.+.
T Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~aI~~~nD~~A~g~~~al~~~ 225 (412)
T 4fe7_A 183 APENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHL 225 (412)
T ss_dssp SCSSHHHHHHHHHHHHHHSCTTEEEEESSHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHhCCCCeEEEEEecHHHHHHHHHHHHc
Confidence 1111111 12223578999999888777776665543
No 62
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=91.03 E-value=1.2 Score=38.12 Aligned_cols=170 Identities=11% Similarity=0.012 Sum_probs=94.1
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 142 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 142 (300)
..+.+.++++|+++..+.. . .+.+.. ... .+|.||+.+...-....+.+.+ .+++++++|....
T Consensus 28 ~gi~~~a~~~g~~~~~~~~---~--~~~~~~---~~~-~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~---- 91 (277)
T 3cs3_A 28 EGIKKGLALFDYEMIVCSG---K--KSHLFI---PEK-MVDGAIILDWTFPTKEIEKFAE---RGHSIVVLDRTTE---- 91 (277)
T ss_dssp HHHHHHHHTTTCEEEEEES---T--TTTTCC---CTT-TCSEEEEECTTSCHHHHHHHHH---TTCEEEESSSCCC----
T ss_pred HHHHHHHHHCCCeEEEEeC---C--CCHHHH---hhc-cccEEEEecCCCCHHHHHHHHh---cCCCEEEEecCCC----
Confidence 3445667788988764332 1 111110 012 7999998775322223333443 3678999886431
Q ss_pred HHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeeeC
Q 022234 143 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 214 (300)
Q Consensus 143 ~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 214 (300)
.. ++.. +..+.+ .+..+++.|.+. ..++|+++.+.... .-+.+.|++.|..+. ++..
T Consensus 92 ~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~--- 156 (277)
T 3cs3_A 92 HR------NIRQ-VLLDNRGGATQAIEQFVNV--GSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE---IIQG--- 156 (277)
T ss_dssp ST------TEEE-EEECHHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE---EEEC---
T ss_pred CC------CCCE-EEeCcHHHHHHHHHHHHHc--CCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee---EEeC---
Confidence 11 2221 122222 234455666554 34789999887532 245677888897765 2221
Q ss_pred CCCcH---HHHHH-c----CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 215 HHVDQ---TVLKQ-A----LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 215 ~~~~~---~~~~~-l----~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
....+ +..+. + .++|+|+.++-..+..+++.+.+.+. .++.+++++...
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 216 (277)
T 3cs3_A 157 DFTEPSGYAAAKKILSQPQTEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDNSE 216 (277)
T ss_dssp CSSHHHHHHHHHHHTTSCCCSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSCCH
T ss_pred CCChhHHHHHHHHHHhcCCCCCcEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeCCcH
Confidence 11221 11222 2 25789999988888888888877653 356777776544
No 63
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=90.88 E-value=1.3 Score=38.60 Aligned_cols=184 Identities=9% Similarity=-0.016 Sum_probs=91.4
Q ss_pred HHHHHHHhCCC----CEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccc
Q 022234 64 KLIKALAKHRI----DCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 64 ~l~~~L~~~G~----~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
.+.+.++++|+ ++..+ +... ..+.+...+. +....+|.||+++..+...+.. . ..+++++.+|..
T Consensus 28 gi~~~l~~~Gy~~g~~v~l~-~~~~--~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~----~-~~~iPvV~~~~~ 99 (302)
T 2qh8_A 28 GLLDGLKAKGYEEGKNLEFD-YKTA--QGNPAIAVQIARQFVGENPDVLVGIATPTAQALVS----A-TKTIPIVFTAVT 99 (302)
T ss_dssp HHHHHHHHTTCCBTTTEEEE-EEEC--TTCHHHHHHHHHHHHHTCCSEEEEESHHHHHHHHH----H-CSSSCEEEEEES
T ss_pred HHHHHHHHcCCCCCCceEEE-EecC--CCCHHHHHHHHHHHHhCCCCEEEECChHHHHHHHh----c-CCCcCEEEEecC
Confidence 45567788898 54321 1111 1233322222 2357899999998766554332 1 247888888742
Q ss_pred hHHH---HHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEE
Q 022234 137 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 137 Ta~~---L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~ 207 (300)
-... .... ...+-+..-+-........++.|.+.....++|.++.+... ...+.+.|++.|+++....
T Consensus 100 ~~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~ 176 (302)
T 2qh8_A 100 DPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEAT 176 (302)
T ss_dssp CTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHhhcCccccc---cCCCCCEEEEECCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEe
Confidence 1110 0000 00011111111111233344455443223479999987643 2456778889998887665
Q ss_pred eeeeeeCCCCcHHHHHH-cCCCCEEEEEChHHHHHHHHHhcccC-CCCceEEEeCHH
Q 022234 208 TYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTE-QWSNSVACIGET 262 (300)
Q Consensus 208 vY~~~~~~~~~~~~~~~-l~~~d~IvftS~s~v~~~~~~~~~~~-~~~~~vv~IG~~ 262 (300)
++.. ....+..+. +.++|+|++.+-..+-..++.+.+.. ..+++++.....
T Consensus 177 ~~~~----~~~~~~~~~l~~~~dai~~~~D~~a~g~~~~l~~~~~~~~i~vig~d~~ 229 (302)
T 2qh8_A 177 ALKS----ADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKTPVFGAATS 229 (302)
T ss_dssp CSSG----GGHHHHHHHHGGGCSEEEECSCHHHHTTHHHHHHHHHHTTCCEEESSHH
T ss_pred cCCh----HHHHHHHHHHhccCCEEEECCcHhHHHHHHHHHHHHHHcCCCEEECCHH
Confidence 5431 111222333 35789988887554432222221111 136788888764
No 64
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=90.74 E-value=0.64 Score=40.67 Aligned_cols=183 Identities=10% Similarity=0.036 Sum_probs=97.2
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
+.+.++++|+++..+.. ...+.+...+.+ ....+|.||+.... ++....+.+.+ .++++++++.....
T Consensus 22 i~~~~~~~g~~~~~~~~----~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 94 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVP----QKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE---MGIPVVTLDTDSPD 94 (313)
T ss_dssp HHHHHHHHTCEEEEECC----SSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSCCTT
T ss_pred HHHHHHHcCCEEEEECC----CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCeEEEeCCCCCC
Confidence 44566778987654321 011222211122 24679999986543 22233444444 36789999875311
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. ++.. +..+.+ .+..+++.|.+.....++|.++.+... ..-+.+.|++.|+++.. ++..
T Consensus 95 ---~~------~~~~-V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~~ 162 (313)
T 2h3h_A 95 ---SG------RYVY-IGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVD--ILND 162 (313)
T ss_dssp ---SC------CSCE-EECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEE--EEEC
T ss_pred ---cc------eeEE-ECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEE--eecC
Confidence 01 1211 222322 233444555543223479999988743 23466778888877654 2211
Q ss_pred eeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHH--HHHHHH
Q 022234 212 EPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT--ASAAKR 269 (300)
Q Consensus 212 ~~~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~T--a~~l~~ 269 (300)
....+ ++++...++|+|+..+-..+...++.+.+.+. .++.++.++... .+.+..
T Consensus 163 ---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~p~dv~vvg~d~~~~~~~~~~~ 227 (313)
T 2h3h_A 163 ---EEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVKE 227 (313)
T ss_dssp ---SSCHHHHHHHHHHHHHHCTTCCEEEECSTTHHHHHHHHHHHTTCTTTSEEEEECCCHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHCcCceEEEEcCCCccHHHHHHHHHcCCCCCeEEEEeCCCHHHHHHHHc
Confidence 22221 12222236899999987777777777766543 368888887543 344443
No 65
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=90.45 E-value=0.22 Score=43.43 Aligned_cols=178 Identities=8% Similarity=-0.008 Sum_probs=100.1
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.++.+.. ..+.+. ..+.+....+|.||+.+...-. .+......+++++++|......
T Consensus 35 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~----~~~~~~~~~iPvV~~~~~~~~~ 105 (301)
T 3miz_A 35 GIQDWANANGKTILIANT-----GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI----VDPESGDVSIPTVMINCRPQTR 105 (301)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE----CCCCCTTCCCCEEEEEEECSST
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEecCCccH----HHHHHHhCCCCEEEECCCCCCC
Confidence 456777888998876542 112221 1222234689999988754322 1112223478999998753110
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeee-
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT- 211 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~- 211 (300)
. ++.. +..+.+ .+...++.|.+. ..++|.++.+.... .-+.+.|++.|..+....++..
T Consensus 106 ---~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 173 (301)
T 3miz_A 106 ---E------LLPS-IEPDDYQGARDLTRYLLER--GHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGM 173 (301)
T ss_dssp ---T------SSCE-EEECHHHHHHHHHHHHHTT--TCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECE
T ss_pred ---C------CCCE-EeeChHHHHHHHHHHHHHc--CCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcC
Confidence 0 1111 122222 234455666554 34689999887543 3456678888887654444443
Q ss_pred --eeCCCCcH--HHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 212 --EPVHHVDQ--TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 212 --~~~~~~~~--~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
........ +.... + .++|+|+..+-..+...++.+.+.+. .++.++.++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D~~ 235 (301)
T 3miz_A 174 DGPVGAENNYVFAAATEMLKQDDRPTAIMSGNDEMAIQIYIAAMALGLRIPQDVSIVGFDDF 235 (301)
T ss_dssp ESSTTSCEECHHHHHHHHHTSTTCCSEEEESSHHHHHHHHHHHHTTTCCHHHHCEEECSBCC
T ss_pred CCCcCccccHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeeEEEeCCc
Confidence 22222111 22222 2 36899999998888888888877653 25667777654
No 66
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=90.37 E-value=0.75 Score=40.64 Aligned_cols=176 Identities=9% Similarity=0.030 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|++++.+.. ..+.+...+.+ ....+|.||+.+...-....+.+. ..+++++++|....
T Consensus 81 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~---~~~iPvV~~~~~~~-- 150 (332)
T 2hsg_A 81 GIEDIATMYKYNIILSNS-----DQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELK---KSPVPVVLAASIES-- 150 (332)
T ss_dssp HHHHHHHHHTCEEEEEEC-----CSHHHHHHHHHHHTSCCSSCCEEECCSSCCHHHHHHHT---TSSSCEEEESCCCS--
T ss_pred HHHHHHHHcCCEEEEEeC-----CCChHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH---hCCCCEEEEccccC--
Confidence 344566778998765431 11222111222 246799999976432222333332 24688999987531
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCC-C-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~-~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. ++.. +..+.+. +..+++.|.+. +.++|.++.+.. . ..-+.+.|++.|..+....++..
T Consensus 151 --~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 219 (332)
T 2hsg_A 151 --TN------QIPS-VTIDYEQAAFDAVQSLIDS--GHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEG 219 (332)
T ss_dssp --CT------TSCE-EEECHHHHHHHHHHHHHTT--TCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEEC
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC
Confidence 12 3221 1222222 34455666554 347899998875 3 23467788999976643222221
Q ss_pred eeCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 212 EPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 212 ~~~~~~~~---~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
....+ +..+. + .++|+|+..+-..+-..+..+.+.+. .++.++.++..-
T Consensus 220 ---~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvvg~D~~~ 278 (332)
T 2hsg_A 220 ---DYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTR 278 (332)
T ss_dssp ---CSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCCHHHHCEEEEESCCG
T ss_pred ---CCCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCCCCCCeEEEEECChH
Confidence 11211 11222 2 36899999988877777777776553 256788776543
No 67
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=90.04 E-value=3.1 Score=35.51 Aligned_cols=177 Identities=12% Similarity=0.089 Sum_probs=97.8
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccch
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
..+.+.++++|++++.+.. ..+.+...+. +....+|.||+.... ......+.+.+. +++++++|...
T Consensus 28 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~ 99 (293)
T 3l6u_A 28 NAFKAEAKANKYEALVATS-----QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKA---GIPVFAIDRMI 99 (293)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHT---TCCEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHc---CCCEEEecCCC
Confidence 3455677788998876543 1122211122 224689999997543 323444545443 67889988654
Q ss_pred HHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccC--C---CCCCEEEEEcCCCC-------hhHHHHHHHhC-CCee
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN--G---KKKCTVLYPASAKA-------SNEIEEGLSNR-GFEV 203 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~--~---~~~~~vL~~rg~~~-------~~~L~~~L~~~-G~~v 203 (300)
... . ++.. +..+.+ .+..+++.|.+. . ...++|+++.|... ..-+.+.|++. |+.+
T Consensus 100 ~~~---~------~~~~-V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~ 169 (293)
T 3l6u_A 100 RSD---A------VVSS-ITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSI 169 (293)
T ss_dssp CCT---T------CSEE-EEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEE
T ss_pred CCC---c------ceeE-EecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEE
Confidence 210 1 1221 222222 233344444441 1 11239999987654 23566778888 8665
Q ss_pred EEEEeeeeeeCCCCcHH-------HHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHH
Q 022234 204 VRLNTYTTEPVHHVDQT-------VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 262 (300)
Q Consensus 204 ~~~~vY~~~~~~~~~~~-------~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~ 262 (300)
... +. .....+. ++....++|+|+..+-..+-..++.+.+.+..++.+++++..
T Consensus 170 ~~~--~~---~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vig~d~~ 230 (293)
T 3l6u_A 170 VDS--VS---GNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLEALKKAKISGKIVVGIDGN 230 (293)
T ss_dssp EEE--EE---CTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred eee--cc---CCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 432 21 1222211 122124689999999988888888887766447788887543
No 68
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=90.00 E-value=0.57 Score=41.64 Aligned_cols=177 Identities=9% Similarity=0.005 Sum_probs=95.8
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|++++... ...+.+...+.+ ....+|.||+.+...-....+.+.+ ..+++++++|....
T Consensus 79 gi~~~a~~~g~~~~~~~-----~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~-- 149 (340)
T 1qpz_A 79 AVEKNCFQKGYTLILGN-----AWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA-- 149 (340)
T ss_dssp HHHHHHHHTTCEEEEEE-----CTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHT--TTTSCEEEEEESSC--
T ss_pred HHHHHHHHcCCEEEEEe-----CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHh--hCCCCEEEEecccC--
Confidence 34556677898876432 112322221222 2467999999765422223333432 24688999986431
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.. +....+..+.+. +...++.|.+. +.++|.++.|.... .-+.+.|+++|..+....++..
T Consensus 150 --~~------~~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~- 218 (340)
T 1qpz_A 150 --KA------DFTDAVIDNAFEGGYMAGRYLIER--GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQG- 218 (340)
T ss_dssp --CC------SSSEEEECCHHHHHHHHHHHHHHH--TCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCC-
T ss_pred --CC------CCCCEEEECHHHHHHHHHHHHHHC--CCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeC-
Confidence 11 211112233222 34445556554 34789999886432 2466778888876543222211
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 213 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 213 ~~~~~~~---~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
....+ +..+. + .++|+|+..+-..+-..++.+.+.+. .++.++.++..
T Consensus 219 --~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvig~D~~ 276 (340)
T 1qpz_A 219 --DFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNV 276 (340)
T ss_dssp --CSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred --CCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeEEEeECCc
Confidence 11221 11222 2 36899999988877777777776553 36778887553
No 69
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=89.82 E-value=1.8 Score=36.89 Aligned_cols=175 Identities=10% Similarity=0.083 Sum_probs=95.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.+.+.++++|++++.... ..+.+.-.+.+ .....|.||+.+.. ......+.+.+ .+++++.++....
T Consensus 22 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~i~~~~~ 93 (271)
T 2dri_A 22 GAQKEADKLGYNLVVLDS-----QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ---ANIPVITLDRQAT 93 (271)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSCCS
T ss_pred HHHHHHHHcCcEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCcEEEecCCCC
Confidence 345567778988765321 12222111122 24679999987643 22233344443 2578999986421
Q ss_pred HHHHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~ 210 (300)
.. +....+..+.+. +....+.|.+...+.++|.++.|.... .-+.+.|++.|+.+... +
T Consensus 94 ----~~------~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~- 160 (271)
T 2dri_A 94 ----KG------EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--Q- 160 (271)
T ss_dssp ----SS------CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE--E-
T ss_pred ----CC------ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe--c-
Confidence 11 211112222222 233445555432123699999876432 24667788888765432 1
Q ss_pred eeeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCH
Q 022234 211 TEPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 261 (300)
Q Consensus 211 ~~~~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~ 261 (300)
......+ ++++.-.++++|+.++-..+-..++.+.+.+..++.++.++.
T Consensus 161 --~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~g~~dv~vvGfD~ 216 (271)
T 2dri_A 161 --PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDG 216 (271)
T ss_dssp --ECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEEEC
T ss_pred --CCCCCHHHHHHHHHHHHHhCCCccEEEECCCcHHHHHHHHHHHcCCCCcEEEEecC
Confidence 1122221 122222468999999988888888877776555788888854
No 70
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=89.47 E-value=2.5 Score=32.46 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=40.9
Q ss_pred CCCCEEEEEChHHHHHH--HHHhcccCCCCceEE--EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 226 LSIPVVAVASPSAVRSW--VNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~--~~~~~~~~~~~~~vv--~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
.+.|+++.+.+....+. ...++... .+.+++ +-++.-.+.+++.|...++.|+. .+.+.+.+++..
T Consensus 70 ~~ad~vi~~~~~~~~n~~~~~~a~~~~-~~~~iiar~~~~~~~~~l~~~G~d~vi~p~~----~~a~~i~~~l~~ 139 (140)
T 3fwz_A 70 ECAKWLILTIPNGYEAGEIVASARAKN-PDIEIIARAHYDDEVAYITERGANQVVMGER----EIARTMLELLET 139 (140)
T ss_dssp GGCSEEEECCSCHHHHHHHHHHHHHHC-SSSEEEEEESSHHHHHHHHHTTCSEEEEHHH----HHHHHHHHHHHC
T ss_pred ccCCEEEEECCChHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHCCCCEEECchH----HHHHHHHHHhhC
Confidence 57899988877655543 22233221 234554 45889999999999998776544 444444444443
No 71
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=89.30 E-value=2.8 Score=39.07 Aligned_cols=172 Identities=14% Similarity=0.063 Sum_probs=96.3
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCC-CEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHHc
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKEA 123 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~-~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~ 123 (300)
-+...++||++.+-. +...+.|++.|+ ++...+- .. +.+++.+ ...++|.+++.|..-+ +.+++.+
T Consensus 11 ~~~~~~kIl~~~~i~--~~~~~~l~~~g~~~v~~~~~----~~-~~~~l~~--~~~~~d~l~v~~~~~i~~~~l~~~--- 78 (416)
T 3k5p_A 11 LSRDRINVLLLEGIS--QTAVEYFKSSGYTNVTHLPK----AL-DKADLIK--AISSAHIIGIRSRTQLTEEIFAAA--- 78 (416)
T ss_dssp -CGGGSCEEECSCCC--HHHHHHHHHTTCCCEEECSS----CC-CHHHHHH--HHTTCSEEEECSSCCBCHHHHHHC---
T ss_pred CCCCCcEEEEECCCC--HHHHHHHHHCCCcEEEECCC----CC-CHHHHHH--HccCCEEEEEcCCCCCCHHHHHhC---
Confidence 334457899998654 556788999998 6654431 11 2234333 2468999988775433 2233322
Q ss_pred CCCCceEE-EEccch----HHHHHHHhhccCCCccccccCCCCcHHHHHHh-------ccc-------------------
Q 022234 124 GTPNVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPK------------------- 172 (300)
Q Consensus 124 ~~~~~~i~-aVG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L~~------------------- 172 (300)
++++++ +.|..+ .+++++. |+.+...|. .+++..++. +.+
T Consensus 79 --p~Lk~I~~~~~G~d~IDl~~a~~~------GI~V~n~p~-~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~ 149 (416)
T 3k5p_A 79 --NRLIAVGCFSVGTNQVELKAARKR------GIPVFNAPF-SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAI 149 (416)
T ss_dssp --TTCCEEEECSSCCTTBCHHHHHHT------TCCEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCT
T ss_pred --CCcEEEEECccccCccCHHHHHhc------CcEEEeCCC-cccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCC
Confidence 234443 445555 5678888 999877764 333332221 110
Q ss_pred --CCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCC--CcHHHHHHcCCCCEEEEEChHH
Q 022234 173 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSA 238 (300)
Q Consensus 173 --~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--~~~~~~~~l~~~d~IvftS~s~ 238 (300)
....|+++.+++-..-...+...|+..|.+|..+..+....... ....+.+.+...|+|++.-|.+
T Consensus 150 ~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt 219 (416)
T 3k5p_A 150 GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSS 219 (416)
T ss_dssp TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-
T ss_pred CCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCC
Confidence 11357899999766666678889999997764433322111110 0011222234678888877654
No 72
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=88.79 E-value=2.5 Score=36.30 Aligned_cols=174 Identities=14% Similarity=0.107 Sum_probs=94.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHH-HHHHHHHHHcCCCCceEEEEccchHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av-~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
.+.+.++++|+++..... ..+.+...+. +....+|.||+.+...- ....+ .....++++++++....
T Consensus 41 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~---~~~~~~iPvV~~~~~~~- 111 (293)
T 2iks_A 41 YLERQARQRGYQLLIACS-----EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQ---RWANDPFPIVALDRALD- 111 (293)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHH---TTTTSSSCEEEEESCCC-
T ss_pred HHHHHHHHCCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHH---HHHhCCCCEEEECCccC-
Confidence 345566788988764431 1222221122 22467999999765321 11222 22224788999986431
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. ++.. +..+.+ .+..+++.|.+. ..++|.++.+... ..-+.+.|+++|.+. ..++..
T Consensus 112 ---~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~--~~~~~~ 177 (293)
T 2iks_A 112 ---RE------HFTS-VVGADQDDAEMLAEELRKF--PAETVLYLGALPELSVSFLREQGFRTAWKDDPREV--HFLYAN 177 (293)
T ss_dssp ---TT------TCEE-EEECHHHHHHHHHHHHHTS--CCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCE--EEEEES
T ss_pred ---cC------CCCE-EEecCHHHHHHHHHHHHHC--CCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCc--cEEEcC
Confidence 12 3322 222222 234455666654 3478999987643 224667788888632 222321
Q ss_pred eeCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 212 EPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 212 ~~~~~~~~---~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
....+ +..+. + .++++|+..+-..+...++.+.+.+. .++.+++++...
T Consensus 178 ---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 236 (293)
T 2iks_A 178 ---SYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNE 236 (293)
T ss_dssp ---SSCHHHHHHHHHHHTTTSCCCSEEEESSHHHHHHHHHHHHHHHSSCCSSCEEEEESCCG
T ss_pred ---CCChhhHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEEECCHH
Confidence 22221 12222 2 25899999988877777777766542 468888887654
No 73
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=88.73 E-value=1.5 Score=33.17 Aligned_cols=114 Identities=19% Similarity=0.257 Sum_probs=64.8
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeee------------EeeeC--CCchhHHHhhhcCCccEEEEeChHH-
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQG--PDTDRLSSVLNDTIFDWIIITSPEA- 112 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i------------~~~~~--~~~~~l~~~l~~~~~d~ivFTS~~a- 112 (300)
+.+++|+|+....-...+++.|.+.|.++..+-.- ..... .+.+.+.+. ....+|.|+.+.+..
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~~d~vi~~~~~~~ 82 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL-GIRNFEYVIVAIGANI 82 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTT-TGGGCSEEEECCCSCH
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhc-CCCCCCEEEECCCCch
Confidence 45778999987656678899999999887654211 00101 111111111 135688998888753
Q ss_pred -H-HHHHHHHHHcCCCCceEEE--EccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhc
Q 022234 113 -G-SVFLEAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 170 (300)
Q Consensus 113 -v-~~~~~~l~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 170 (300)
. ......+++.+.+ ++++ -++...+.+++. |....+.|....+..|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~--~ii~~~~~~~~~~~l~~~------g~~~vi~p~~~~~~~l~~~~ 136 (144)
T 2hmt_A 83 QASTLTTLLLKELDIP--NIWVKAQNYYHHKVLEKI------GADRIIHPEKDMGVKIAQSL 136 (144)
T ss_dssp HHHHHHHHHHHHTTCS--EEEEECCSHHHHHHHHHH------TCSEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHc------CCCEEECccHHHHHHHHHHH
Confidence 2 2333444555442 4443 344555677777 88766666655666666554
No 74
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=88.68 E-value=4 Score=30.57 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=65.7
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeee-------------EeeeC--CCchhHHHhhhcCCccEEEEeChHHH-
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-------------QHAQG--PDTDRLSSVLNDTIFDWIIITSPEAG- 113 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i-------------~~~~~--~~~~~l~~~l~~~~~d~ivFTS~~av- 113 (300)
+|+|+|+....-...+++.|.+.|.++..+-.- ..... .+.+.+... .....|.|+.+.+..-
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~~d~vi~~~~~~~~ 82 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDA-GIEDADMYIAVTGKEEV 82 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHT-TTTTCSEEEECCSCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHc-CcccCCEEEEeeCCchH
Confidence 578888876555677888888888776654210 00000 011111111 2457899999876542
Q ss_pred -HHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 114 -SVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 114 -~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
..+....+..+...+-+.+-++...+.+++. |....+.|....+..+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~------g~~~v~~p~~~~~~~~~~~~~ 135 (140)
T 1lss_A 83 NLMSSLLAKSYGINKTIARISEIEYKDVFERL------GVDVVVSPELIAANYIEKLIE 135 (140)
T ss_dssp HHHHHHHHHHTTCCCEEEECSSTTHHHHHHHT------TCSEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEecCHhHHHHHHHc------CCCEEECHHHHHHHHHHHHhc
Confidence 2233344444433444445667777888887 987666676666666665553
No 75
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=88.49 E-value=2.2 Score=33.30 Aligned_cols=117 Identities=9% Similarity=0.015 Sum_probs=69.1
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeE-------------eeeCC--CchhHHHhhhcCCccEEEEeCh
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGP--DTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~-------------~~~~~--~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
..+.+++|+|.....-...+++.|.+.|+++..+-.-. ..... +.+.+.+. ....+|.||.+.+
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~-~~~~ad~Vi~~~~ 93 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKEC-GMEKADMVFAFTN 93 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTT-TGGGCSEEEECSS
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHc-CcccCCEEEEEeC
Confidence 67789999999876667789999999998776552210 00000 11111111 1356899998887
Q ss_pred HHH--HHHHHHHHHcCCCCceEE--EEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 111 EAG--SVFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 111 ~av--~~~~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
+.. ......++... ...+++ +-++...+.+++. |.. .+.|....+..|++.|.
T Consensus 94 ~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~l~~~------G~~-vi~p~~~~a~~l~~~l~ 150 (155)
T 2g1u_A 94 DDSTNFFISMNARYMF-NVENVIARVYDPEKIKIFEEN------GIK-TICPAVLMIEKVKEFII 150 (155)
T ss_dssp CHHHHHHHHHHHHHTS-CCSEEEEECSSGGGHHHHHTT------TCE-EECHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCc-EEcHHHHHHHHHHHHHh
Confidence 643 23333333322 233343 3566777888887 988 67777666666766654
No 76
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=87.96 E-value=6.8 Score=37.54 Aligned_cols=219 Identities=13% Similarity=0.109 Sum_probs=89.7
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeee-------------eEeeeCC--CchhHHHhhhcCCccEEEEeChHHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQGP--DTDRLSSVLNDTIFDWIIITSPEAG 113 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~-------------i~~~~~~--~~~~l~~~l~~~~~d~ivFTS~~av 113 (300)
..++|+|..-..-...+++.|.+.|.+++.+.. +.....+ +.+.+.+ ....+++.++.|.....
T Consensus 126 ~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~-a~i~~a~~vi~t~~D~~ 204 (565)
T 4gx0_A 126 TRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAG-LRVAAARSIIANLSDPD 204 (565)
T ss_dssp CCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHH-TTGGGCSEEEECSCHHH
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHh-cCcccCCEEEEeCCcHH
Confidence 346788888777778999999999988765531 1111111 1122222 24567899999887766
Q ss_pred HHHHHHHHHcCCCCceEEEE--ccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCC------CC-----EE
Q 022234 114 SVFLEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKK------KC-----TV 180 (300)
Q Consensus 114 ~~~~~~l~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~------~~-----~v 180 (300)
..+.-...+... +.++++. .+...+.|++. |.+..+.|....+..|++.+...... ++ .+
T Consensus 205 n~~~~~~ar~~~-~~~iiar~~~~~~~~~l~~~------Gad~vi~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~ 277 (565)
T 4gx0_A 205 NANLCLTVRSLC-QTPIIAVVKEPVHGELLRLA------GANQVVPLTRILGRYLGIRATTCGALAHILDSFGNLQIAEL 277 (565)
T ss_dssp HHHHHHHHHTTC-CCCEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHhc-CceEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhcccccccchhcccCCceEEEE
Confidence 554443332222 6667765 35677888888 98866666655566666555431100 00 01
Q ss_pred EEEcCCCChhHHHHH-HH-hCCCeeEEEEeeeeeeCCC-CcHHHHHHcCCCC-EEEEEChHHHHHHHHHhcccCCCCceE
Q 022234 181 LYPASAKASNEIEEG-LS-NRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIP-VVAVASPSAVRSWVNLISDTEQWSNSV 256 (300)
Q Consensus 181 L~~rg~~~~~~L~~~-L~-~~G~~v~~~~vY~~~~~~~-~~~~~~~~l~~~d-~IvftS~s~v~~~~~~~~~~~~~~~~v 256 (300)
.+..+......|.+. +. ..| +.-+.+++...... ..+.. +..-| .+++.++..++.+.+.+...... ..+
T Consensus 278 ~v~~s~l~G~~l~el~~~~~~~--~~vi~i~r~g~~~~p~~~~~---l~~GD~L~v~g~~~~l~~~~~~~~~~~~~-~~v 351 (565)
T 4gx0_A 278 PVHGTPFAGKTIGESGIRQRTG--LSIIGVWERGSLTTPQRETV---LTEQSLLVLAGTKSQLAALEYLIGEAPED-ELI 351 (565)
T ss_dssp --------------------------------------------------------------------------CC-CCE
T ss_pred EECCCccCCCCHHHcCcchhcC--CEEEEEEECCEEeCCCCCcE---eCCCCEEEEEeCHHHHHHHHHHhcCCCCC-CCE
Confidence 111111111112221 11 122 22233333221111 11111 22334 56677788888887766543212 233
Q ss_pred EE-----eCHHHHHHHHHcCCCeEEecCCC
Q 022234 257 AC-----IGETTASAAKRLGLKNVYYPTHP 281 (300)
Q Consensus 257 v~-----IG~~Ta~~l~~~G~~~~~v~~~p 281 (300)
+. +|...++.|.+.|..++++-..+
T Consensus 352 iIiG~G~~G~~la~~L~~~g~~v~vid~d~ 381 (565)
T 4gx0_A 352 FIIGHGRIGCAAAAFLDRKPVPFILIDRQE 381 (565)
T ss_dssp EEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCh
Confidence 33 35677888888888876555443
No 77
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=87.61 E-value=17 Score=33.99 Aligned_cols=199 Identities=10% Similarity=0.035 Sum_probs=111.4
Q ss_pred chHHHHHHHHhCCCCEEEeeeeE------------eeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCc
Q 022234 61 KNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNV 128 (300)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~i~------------~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~ 128 (300)
+..++.+.|++.|+++..+|=+. .-+..+ ..+.+.-+.++...-+..++.+-....+.|++.. ++
T Consensus 183 d~~eik~lL~~~Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg-~~~~ei~~~~~A~~niv~~~~~~~~~A~~Le~~~--Gi 259 (458)
T 1mio_B 183 DMREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGG-TKIEDLKDTGNSDLTLSLGSYASDLGAKTLEKKC--KV 259 (458)
T ss_dssp HHHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCS-BCHHHHHTTSSCSEEEEESHHHHHHHHHHHHHHS--CC
T ss_pred HHHHHHHHHHHcCCcEEEeccccccccCcccCccceeCCCC-CcHHHHHhhccCCEEEEEchhhHHHHHHHHHHHh--CC
Confidence 34799999999999999887432 111011 1233333467777777778887777777776542 34
Q ss_pred eEEE----Ec-cchHHHHHHHhhccCCCccccccCCCCc--HHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhC
Q 022234 129 RIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNR 199 (300)
Q Consensus 129 ~i~a----VG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~ 199 (300)
+.+. +| ..|.+.|++.. .+.|.. +|.... -..+.+.+.+. ...|+++++..+..-.-.|...|.+.
T Consensus 260 P~~~~~~p~G~~~T~~~l~~la--~~~g~~---~~~~i~~e~~~~~~~~~d~~~~l~gkrv~i~~~~~~~~~l~~~L~el 334 (458)
T 1mio_B 260 PFKTLRTPIGVSATDEFIMALS--EATGKE---VPASIEEERGQLIDLMIDAQQYLQGKKVALLGDPDEIIALSKFIIEL 334 (458)
T ss_dssp CEEEECCCBHHHHHHHHHHHHH--HHHCCC---CCHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECHHHHHHHHHHHHTT
T ss_pred CEEecCCCcCHHHHHHHHHHHH--HHHCCC---chHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHC
Confidence 4444 44 57888777762 111433 121100 11223333221 12678999998877777888999999
Q ss_pred CCeeEEEEeeeeeeCCCCcHHHHHHcC--C-CC-EEEEE-ChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCe
Q 022234 200 GFEVVRLNTYTTEPVHHVDQTVLKQAL--S-IP-VVAVA-SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 200 G~~v~~~~vY~~~~~~~~~~~~~~~l~--~-~d-~Ivft-S~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
|+.+..+.+.. ..+...+.+.+.+. . .+ -|++. ....++.++... +..++.-|..-...+++.|+.-
T Consensus 335 G~~vv~v~~~~--~~~~~~~~~~~ll~~~~~~~~~v~~~~d~~~l~~~i~~~------~pDl~ig~~~~~~~a~k~gip~ 406 (458)
T 1mio_B 335 GAIPKYVVTGT--PGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNE------GVDLLISNTYGKFIAREENIPF 406 (458)
T ss_dssp TCEEEEEEESS--CCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHS------CCSEEEESGGGHHHHHHHTCCE
T ss_pred CCEEEEEEeCC--CCHHHHHHHHHHHHhcCCCCCEEEECCCHHHHHHHHHhc------CCCEEEeCcchHHHHHHcCCCE
Confidence 98886655433 11111111111122 2 34 45554 655555554433 3345556666666667788764
Q ss_pred E
Q 022234 275 V 275 (300)
Q Consensus 275 ~ 275 (300)
+
T Consensus 407 ~ 407 (458)
T 1mio_B 407 V 407 (458)
T ss_dssp E
T ss_pred E
Confidence 3
No 78
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.59 E-value=4.3 Score=32.47 Aligned_cols=117 Identities=10% Similarity=0.128 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCChhHHHHHHHhC-CCeeEEEEeee------------eeeCCCCcHHHHHH---cCCCCEEEEEChHH--
Q 022234 177 KCTVLYPASAKASNEIEEGLSNR-GFEVVRLNTYT------------TEPVHHVDQTVLKQ---ALSIPVVAVASPSA-- 238 (300)
Q Consensus 177 ~~~vL~~rg~~~~~~L~~~L~~~-G~~v~~~~vY~------------~~~~~~~~~~~~~~---l~~~d~IvftS~s~-- 238 (300)
+.++++++...-...+.+.|.+. |++|.-+..-. ...-+....+.+.. +.+.|+|+.+.+..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~ 118 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQG 118 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHH
Confidence 34666665544455566667666 66554332100 00011111223333 35789988877643
Q ss_pred HHHHHHHhcccCCCCceE--EEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHH
Q 022234 239 VRSWVNLISDTEQWSNSV--ACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 294 (300)
Q Consensus 239 v~~~~~~~~~~~~~~~~v--v~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~ 294 (300)
.......++..+ ....+ .+.++...+.+++.|...++.+..-.-..+.+.+...+
T Consensus 119 ~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~~~~a~~l~~~~~~~~ 175 (183)
T 3c85_A 119 NQTALEQLQRRN-YKGQIAAIAEYPDQLEGLLESGVDAAFNIYSEAGSGFARHVCKQL 175 (183)
T ss_dssp HHHHHHHHHHTT-CCSEEEEEESSHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHcCCCEEEchHHHHHHHHHHHHHHhc
Confidence 233333444332 23333 45688889999999999776666555556666666554
No 79
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=87.53 E-value=2 Score=37.87 Aligned_cols=191 Identities=14% Similarity=0.085 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEE-ccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVV-GAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~-av~~~~~~l~~~~~~~~~i~aV-G~~Ta 138 (300)
.+.+.++++|+++..... ......+.+...+.+ ....+|.||+.+.. ......+.+.+. +.+++++ +....
T Consensus 65 gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~ip~V~~~~~~~~ 140 (342)
T 1jx6_A 65 SFEKRLYKLNINYQLNQV-FTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDS---TNTKLILQNITTP 140 (342)
T ss_dssp HHHHHHHHTTCCEEEEEE-ECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHHHHH---CSCEEEEETCCSC
T ss_pred HHHHHHHHcCCeEEEEec-CCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHHHHHc---CCCEEEEecCCCc
Confidence 445667788988764421 111001222111122 24679999994322 223334444443 4566666 54211
Q ss_pred -HHHH-HHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEee
Q 022234 139 -SIFE-EVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 139 -~~L~-~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY 209 (300)
..+. .. ++.. +..+.+. +..+++.|.+.....++|.++.+... ..-+.+.|++.|. +....++
T Consensus 141 ~~~~~~~~------~~~~-V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~ 212 (342)
T 1jx6_A 141 VREWDKHQ------PFLY-VGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-FELQSAY 212 (342)
T ss_dssp BGGGTTSC------CSEE-EECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-CEEEEEE
T ss_pred ccccccCC------CceE-EecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCC-cEEEEEe
Confidence 0000 11 2221 2233222 34455556553212479999988754 2245667777775 4333333
Q ss_pred eeeeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHH--HHHHHH
Q 022234 210 TTEPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETT--ASAAKR 269 (300)
Q Consensus 210 ~~~~~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~T--a~~l~~ 269 (300)
.. ....+ ++++.-.++|+|+..+-..+-..+..+.+.+..++.+++++... ...+..
T Consensus 213 ~~---~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~g~~di~vvg~D~~~~~~~~~~~ 278 (342)
T 1jx6_A 213 YT---KATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQK 278 (342)
T ss_dssp CC---CSSHHHHHHHHHHHHHHCCCCSEEEESSHHHHHHHHHHHHHHTCTTSEEBCSBCCHHHHHHHHH
T ss_pred cC---CCCHHHHHHHHHHHHHhCCCccEEEECCChhHHHHHHHHHHcCCCCcEEEEeCCCHHHHHHHHc
Confidence 21 11221 12222246899999998877777777766544467788876654 444443
No 80
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=87.48 E-value=3.5 Score=35.18 Aligned_cols=174 Identities=10% Similarity=0.100 Sum_probs=92.8
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchh----HHHhhhcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccch
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR----LSSVLNDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~----l~~~l~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
.+.+.++++|++++.... ..+.+. ++.. ....+|.||+.+.. .+....+.+.+. ++++++++...
T Consensus 22 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~i~~l-~~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~ 92 (283)
T 2ioy_A 22 GAEEKAKELGYKIIVEDS-----QNDSSKELSNVEDL-IQQKVDVLLINPVDSDAVVTAIKEANSK---NIPVITIDRSA 92 (283)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHH-HHTTCSEEEECCSSTTTTHHHHHHHHHT---TCCEEEESSCC
T ss_pred HHHHHHHhcCcEEEEecC-----CCCHHHHHHHHHHH-HHcCCCEEEEeCCchhhhHHHHHHHHHC---CCeEEEecCCC
Confidence 344567778988765421 122221 2222 24679999987642 222333444442 57888888642
Q ss_pred HHHHHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhC-CCeeEEEEe
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNT 208 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~~~v 208 (300)
. .. .....+..+.+. +..+.+.|.+.....++|+++.|.... .-+.+.|++. |+.+.. .
T Consensus 93 ~----~~------~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~--~ 160 (283)
T 2ioy_A 93 N----GG------DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA--K 160 (283)
T ss_dssp S----SS------CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE--E
T ss_pred C----Cc------ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--e
Confidence 1 11 111112222222 344455555542123689999876432 2356677777 755422 2
Q ss_pred eeeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCH
Q 022234 209 YTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 261 (300)
Q Consensus 209 Y~~~~~~~~~~---~----~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~ 261 (300)
+. .....+ + +++.-.++++|+..+-..+-..++.+.+.+..++.++.++.
T Consensus 161 ~~---~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~di~viG~D~ 217 (283)
T 2ioy_A 161 QA---ADFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIEAANRQGIIVVGFDG 217 (283)
T ss_dssp EE---CTTCHHHHHHHHHHHHHHCSCCCEEEESSHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred cc---CCCCHHHHHHHHHHHHHhCCCccEEEECCchHHHHHHHHHHHCCCCCcEEEEeCC
Confidence 11 122221 1 22222468999999988887777777765545788888864
No 81
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=87.35 E-value=0.65 Score=41.72 Aligned_cols=161 Identities=11% Similarity=0.089 Sum_probs=89.7
Q ss_pred hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCC
Q 022234 97 LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGK 175 (300)
Q Consensus 97 l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~ 175 (300)
+....+|.||+.+...-....+.+.+. +++++++|... ... ++.. +..+.+ .+...++.|.+.
T Consensus 124 l~~~~vdGiIi~~~~~~~~~~~~l~~~---~iPvV~i~~~~----~~~------~~~~-V~~D~~~~~~~a~~~L~~~-- 187 (366)
T 3h5t_A 124 VNNAAVDGVVIYSVAKGDPHIDAIRAR---GLPAVIADQPA----REE------GMPF-IAPNNRKAIAPAAQALIDA-- 187 (366)
T ss_dssp HHTCCCSCEEEESCCTTCHHHHHHHHH---TCCEEEESSCC----SCT------TCCE-EEECHHHHTHHHHHHHHHT--
T ss_pred HHhCCCCEEEEecCCCChHHHHHHHHC---CCCEEEECCcc----CCC------CCCE-EEeChHHHHHHHHHHHHHC--
Confidence 345789999998764433444444443 57899998743 112 3322 122222 234455566554
Q ss_pred CCCEEEEEcCC------------------------CChhHHHHHHHhCCCeeEEEEeeeeeeCCCC-c----HHHHHHcC
Q 022234 176 KKCTVLYPASA------------------------KASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-D----QTVLKQAL 226 (300)
Q Consensus 176 ~~~~vL~~rg~------------------------~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~----~~~~~~l~ 226 (300)
..++|.++.+. ....-+.+.|+++|..+....++........ . .++++.-.
T Consensus 188 G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 267 (366)
T 3h5t_A 188 GHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHP 267 (366)
T ss_dssp TCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCT
T ss_pred CCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCC
Confidence 34688888721 1123567788888877654333322111111 1 11222224
Q ss_pred CCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHHHHHHHHcCCCeE
Q 022234 227 SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 227 ~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
++|+|+..+-..+-..+..+.+.++ .++.++.++..-... ..++..+
T Consensus 268 ~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvigfD~~~~~~--~~~lttv 317 (366)
T 3h5t_A 268 DLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGTHMAL--ARDLTTV 317 (366)
T ss_dssp TCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCHHHH--HTTCCEE
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEECCChhhc--CCCccEE
Confidence 7899999998888777777776653 478888886543222 3456543
No 82
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=87.21 E-value=4.6 Score=30.67 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeee------------EeeeC--CCchhHHHhhhcCCccEEEEeChHHHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQG--PDTDRLSSVLNDTIFDWIIITSPEAGS 114 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i------------~~~~~--~~~~~l~~~l~~~~~d~ivFTS~~av~ 114 (300)
.+++|+|+....-...+++.|.+.|++++.+-.- ..... .+.+.+.+ ......|.||.+.++.-.
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~-~~~~~~d~vi~~~~~~~~ 83 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRS-LDLEGVSAVLITGSDDEF 83 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHH-SCCTTCSEEEECCSCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHh-CCcccCCEEEEecCCHHH
Confidence 4678999987655678999999999988765321 11111 11122221 124578999998875432
Q ss_pred H--HHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 115 V--FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 115 ~--~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
. ....+++.+...+-.-+-++.-.+.+++. |.+..+.|....+..+...+.
T Consensus 84 n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~i~ 136 (141)
T 3llv_A 84 NLKILKALRSVSDVYAIVRVSSPKKKEEFEEA------GANLVVLVADAVKQAFMDKIK 136 (141)
T ss_dssp HHHHHHHHHHHCCCCEEEEESCGGGHHHHHHT------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCceEEEEEcChhHHHHHHHc------CCCEEECHHHHHHHHHHHHHh
Confidence 2 23334444421222333445556788888 988767777666777776654
No 83
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=86.91 E-value=3.2 Score=38.51 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=58.1
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChH-------HHHHHHHHhcccCCCCceEEEeC-
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSWVNLISDTEQWSNSVACIG- 260 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s-------~v~~~~~~~~~~~~~~~~vv~IG- 260 (300)
.+.+.+.|.+.|+.+..+.+|.... ....++...+.+.+.|+|.||. .+..|+..+......+.++.++|
T Consensus 283 A~~ia~gl~~~Gv~~~~~~~~d~~~--~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~~~~~~K~~~~FGS 360 (410)
T 4dik_A 283 MKKAIDSLKEKGFTPVVYKFSDEER--PAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGV 360 (410)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSCC--CCHHHHHHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEeccCCC--CCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHhcccCCCEEEEEEC
Confidence 4578889999998876666654322 2334566667899999999995 56666665554433456666666
Q ss_pred --------HHHHHHHHHcCCCe
Q 022234 261 --------ETTASAAKRLGLKN 274 (300)
Q Consensus 261 --------~~Ta~~l~~~G~~~ 274 (300)
+...+.+++.|+++
T Consensus 361 yGWsg~a~~~~~~~l~~~~~~~ 382 (410)
T 4dik_A 361 HGWAPSAERTAGELLKETKFRI 382 (410)
T ss_dssp CCCCCTTSCCHHHHHTTSSCEE
T ss_pred CCCCcHHHHHHHHHHHHCCCEE
Confidence 36678888899874
No 84
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=86.86 E-value=0.38 Score=41.49 Aligned_cols=175 Identities=11% Similarity=0.070 Sum_probs=93.4
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHH
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 141 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 141 (300)
+.+.++++|+++..... ..+.+...+. +....+|.||+.+...-....+.+ .++++++++.....
T Consensus 29 i~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l-----~~iPvV~~~~~~~~-- 96 (288)
T 2qu7_A 29 ISHECQKHHLHVAVASS-----EENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKREW-----LKIPIMTLDRELES-- 96 (288)
T ss_dssp HHHHHGGGTCEEEEEEC-----TTCHHHHHHHHHHHHHTTEEEEEECCSSSCCCCCGGG-----GGSCEEEESCCCSS--
T ss_pred HHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCccEEEEecCCCChHHHHHh-----cCCCEEEEecccCC--
Confidence 34556678987764321 1232221112 224679999997654321111111 36789999865311
Q ss_pred HHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeee
Q 022234 142 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 213 (300)
Q Consensus 142 ~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 213 (300)
. ++.. +..+.+ .+..+++.|.+. ..++|.++.+... ..-+.+.|++.|..+....++.. .
T Consensus 97 --~------~~~~-V~~d~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~-~ 164 (288)
T 2qu7_A 97 --T------SLPS-ITVDNEEAAYIATKRVLES--TCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYS-D 164 (288)
T ss_dssp --C------CCCE-EEECHHHHHHHHHHHHHTS--SCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEEC-C
T ss_pred --C------CCCE-EEECcHHHHHHHHHHHHHc--CCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEec-c
Confidence 1 2221 122222 234555666654 3478999987643 23456778888876543212210 1
Q ss_pred CCC----CcH---HHHHH-c-CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 214 VHH----VDQ---TVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 214 ~~~----~~~---~~~~~-l-~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
... ..+ +..+. + .++|+|+..+-..+..+++.+.+.+. .++.+++++...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 226 (288)
T 2qu7_A 165 QQLGTNAQIYSGYEATKTLLSKGIKGIVATNHLLLLGALQAIKESEKEIKKDVIIVGFDDSY 226 (288)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHTTCCEEEECSHHHHHHHHHHHHHSSCCBTTTBEEEEESCCT
T ss_pred CCccccCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEEeCChH
Confidence 111 111 11111 2 27899999988877777777776552 467888887644
No 85
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=86.47 E-value=2.2 Score=37.51 Aligned_cols=182 Identities=12% Similarity=0.074 Sum_probs=96.8
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchh----HHHhhhcCC--ccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEcc
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR----LSSVLNDTI--FDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~----l~~~l~~~~--~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
.+.+.++++|++++.+.. ..+.+. ++..+ ... +|.||+..... .....+.+.+. ++++++++.
T Consensus 26 gi~~~a~~~g~~l~~~~~-----~~~~~~~~~~i~~l~-~~~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~ 96 (332)
T 2rjo_A 26 GAQSFAKSVGLPYVPLTT-----EGSSEKGIADIRALL-QKTGGNLVLNVDPNDSADARVIVEACSKA---GAYVTTIWN 96 (332)
T ss_dssp HHHHHHHHHTCCEEEEEC-----TTCHHHHHHHHHHHH-HHTTTCEEEEECCSSHHHHHHHHHHHHHH---TCEEEEESC
T ss_pred HHHHHHHHcCCEEEEecC-----CCCHHHHHHHHHHHH-HCCCCCCEEEEeCCCHHHHHHHHHHHHHC---CCeEEEECC
Confidence 445667788998765432 122221 22222 345 99999876543 22344444432 578999986
Q ss_pred chHHH-HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhC-CCeeEE
Q 022234 136 GTASI-FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVR 205 (300)
Q Consensus 136 ~Ta~~-L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~ 205 (300)
..... ...+ +-.++.. +..+.+ .+..+++.|.+.....++|.++.+.... .-+.+.|++. |+.+..
T Consensus 97 ~~~~~~~~~~---~~~~~~~-V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~ 172 (332)
T 2rjo_A 97 KPKDLHPWDY---NPNYVAH-LSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLD 172 (332)
T ss_dssp CCTTCCGGGG---TTTEEEE-EECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred CCCcccchhc---ccceeEE-EccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEe
Confidence 53210 0001 0001111 222222 2344555665521234689999876432 2366788888 877654
Q ss_pred EEeeeeeeCCCCcH-------HHHHH-cCCCCEEEEEChHHHHHHHHHhcccCCC-CceEEEeCHHH
Q 022234 206 LNTYTTEPVHHVDQ-------TVLKQ-ALSIPVVAVASPSAVRSWVNLISDTEQW-SNSVACIGETT 263 (300)
Q Consensus 206 ~~vY~~~~~~~~~~-------~~~~~-l~~~d~IvftS~s~v~~~~~~~~~~~~~-~~~vv~IG~~T 263 (300)
. +. .....+ ++++. -.++|+|+.++-..+..+++.+.+.+.. ++.++.++...
T Consensus 173 ~--~~---~~~~~~~~~~~~~~ll~~~~~~~~aI~~~nd~~A~g~~~al~~~G~~~di~vvg~D~~~ 234 (332)
T 2rjo_A 173 F--QV---ADWNSQKAFPIMQAWMTRFNSKIKGVWAANDDMALGAIEALRAEGLAGQIPVTGMDGTQ 234 (332)
T ss_dssp E--EE---CTTCHHHHHHHHHHHHHHHGGGEEEEEESSHHHHHHHHHHHHHTTCBTTBCEECSBCCH
T ss_pred e--cc---CCCCHHHHHHHHHHHHHhcCCCeeEEEECCCchHHHHHHHHHHcCCCCCCEEEeecCCH
Confidence 2 21 122211 12222 2357899999888787788877765543 67787775543
No 86
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=86.24 E-value=8.4 Score=28.46 Aligned_cols=109 Identities=22% Similarity=0.199 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhcccCCC
Q 022234 176 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTEQW 252 (300)
Q Consensus 176 ~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~~~ 252 (300)
.+.+||++..+.. +..|.+.|+..|+.|. .+. ...+.+..+ ..+|+|+.....+. .++..+... .
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~al~~l~~~~~dlvi~~~~~g~-~~~~~l~~~--~ 84 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMAD---VTE------SLEDGEYLMDIRNYDLVMVSDKNAL-SFVSRIKEK--H 84 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEE---EES------CHHHHHHHHHHSCCSEEEECSTTHH-HHHHHHHHH--S
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEE---EeC------CHHHHHHHHHcCCCCEEEEcCccHH-HHHHHHHhc--C
Confidence 4578999977764 6778888998886542 111 112222222 47898883333333 445555443 3
Q ss_pred -CceEEEeC----HHHHHHHHHcCCCeEEecCCC-CHHHHHHHHHHHHHcc
Q 022234 253 -SNSVACIG----ETTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALREH 297 (300)
Q Consensus 253 -~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p-~~~~l~~ai~~~~~~~ 297 (300)
+.+++.++ ......+.+.|..- ++.... +.+.|.+.|...+...
T Consensus 85 ~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 85 SSIVVLVSSDNPTSEEEVHAFEQGADD-YIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHTTCSE-EEESSCSCHHHHHHHHHHHTC--
T ss_pred CCccEEEEeCCCCHHHHHHHHHcCCce-eeeCCCCCHHHHHHHHHHHHhhh
Confidence 56776663 24555666788864 566666 8999999998877554
No 87
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.20 E-value=3.6 Score=32.91 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=70.7
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhC-CCCEEEeeee------------EeeeC--CCchhHHHhhhcCCccEEEEeChH
Q 022234 47 SNSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPLI------------QHAQG--PDTDRLSSVLNDTIFDWIIITSPE 111 (300)
Q Consensus 47 ~l~g~~VlitR~~~~~~~l~~~L~~~-G~~v~~~P~i------------~~~~~--~~~~~l~~~l~~~~~d~ivFTS~~ 111 (300)
++.+++|+|.....-...+++.|.+. |+++..+-.- ..... .+.+.+.+......+|+||.++++
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH 115 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence 46788999998766677899999999 9988765321 11111 111112111024578999998774
Q ss_pred H--HHHHHHHHHHcCCCCceEEE--EccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 112 A--GSVFLEAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 112 a--v~~~~~~l~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
. .......++..+. ..++++ .++...+.+++. |.+..+.|....+..+++.+.
T Consensus 116 ~~~~~~~~~~~~~~~~-~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~~~ 172 (183)
T 3c85_A 116 HQGNQTALEQLQRRNY-KGQIAAIAEYPDQLEGLLES------GVDAAFNIYSEAGSGFARHVC 172 (183)
T ss_dssp HHHHHHHHHHHHHTTC-CSEEEEEESSHHHHHHHHHH------TCSEEEEHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHc------CCCEEEchHHHHHHHHHHHHH
Confidence 3 3333444555442 345544 445666788888 988766666555666665543
No 88
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=85.86 E-value=2 Score=37.01 Aligned_cols=190 Identities=8% Similarity=-0.002 Sum_probs=95.9
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.+.+.++++|+++..+- ....+.+...+.+ ....+|.||+.+.. ......+.+.+ .++++++++...
T Consensus 25 g~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~- 96 (303)
T 3d02_A 25 GVVQAGKEFNLNASQVG----PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARD---AGIVVLTNESPG- 96 (303)
T ss_dssp HHHHHHHHTTEEEEEEC----CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHH---TTCEEEEESCTT-
T ss_pred HHHHHHHHcCCEEEEEC----CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH---CCCeEEEEecCC-
Confidence 34556778897664321 0111222211222 24679999987643 33333444443 368899998651
Q ss_pred HHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCC-EEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEee
Q 022234 139 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKC-TVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~-~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY 209 (300)
.... ++.. +..+.+ .+..+++.|.+.. +.+ +++++.|.... .-+.+.|+++|..+..+..+
T Consensus 97 --~~~~------~~~~-v~~d~~~~g~~a~~~l~~~~-g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~ 166 (303)
T 3d02_A 97 --QPSA------NWDV-EIIDNEKFAAEYVEHMAKRM-GGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTRR 166 (303)
T ss_dssp --CTTC------SEEE-ESSCHHHHHHHHHHHHHHHT-TTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSSC
T ss_pred --CCCC------ceEE-EecCHHHHHHHHHHHHHHHh-CcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEEee
Confidence 1111 2221 122222 2344555665522 234 89998876532 23456666554333222211
Q ss_pred eeeeCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHH--HHHHHHHcCCC
Q 022234 210 TTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET--TASAAKRLGLK 273 (300)
Q Consensus 210 ~~~~~~~~~~---~~~~~-l---~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~--Ta~~l~~~G~~ 273 (300)
. ......+ +..+. + .++|+|+..+-..+...++.+.+.+. .++.+++++.. .++.+.+-.+.
T Consensus 167 ~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~dv~vig~d~~~~~~~~~~~~~lt 238 (303)
T 3d02_A 167 M--PVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGMMIPSQAASLIKSGDIT 238 (303)
T ss_dssp B--SCTTCHHHHHHHHHHHHHHCTTEEEEEESSTTHHHHHHHHHHHTTCTTTCEEEECCCHHHHHHHHHHTSSC
T ss_pred c--CCCCCHHHHHHHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCCeE
Confidence 0 1112221 11111 2 35788888886666667777766554 36888888753 45666644454
No 89
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=85.68 E-value=4.8 Score=34.80 Aligned_cols=179 Identities=10% Similarity=0.052 Sum_probs=98.3
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccch
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
..+.+.++++|+++..+.. ..+.+...+.+ ....+|.||+..... .....+.+.+ .++++++++...
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 93 (313)
T 3m9w_A 22 DIFVKKAESLGAKVFVQSA-----NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQ---EGIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHHHTSCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHT---TTCEEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH---CCCeEEEECCcC
Confidence 4566778888988876533 12222211222 246899999987543 2344444443 368999998764
Q ss_pred HHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhC----CCeeEE
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR----GFEVVR 205 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~----G~~v~~ 205 (300)
.. . ++...+..+.+ .+..+++.|.+.. +.++|+++.|.... .-+.+.|++. ++.+..
T Consensus 94 ~~----~------~~~~~V~~D~~~~g~~a~~~L~~~~-G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~ 162 (313)
T 3m9w_A 94 ND----A------DIDFYISFDNEKVGELQAKALVDIV-PQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVG 162 (313)
T ss_dssp TT----S------CCSEEEEECHHHHHHHHHHHHHHHC-SSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CC----C------CceEEEecCHHHHHHHHHHHHHHhC-CCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEe
Confidence 22 2 44222223322 2445556666222 33589999876542 3445566665 444322
Q ss_pred EEeeeeeeCCCCc----HHHHHHc-CCCCEEEEEChHHHHHHHHHhcccCCC-CceEEEeCH
Q 022234 206 LNTYTTEPVHHVD----QTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQW-SNSVACIGE 261 (300)
Q Consensus 206 ~~vY~~~~~~~~~----~~~~~~l-~~~d~IvftS~s~v~~~~~~~~~~~~~-~~~vv~IG~ 261 (300)
.. |......... .++++.. .++++|+.++-..+...++.+.+.+.. ++.++.++.
T Consensus 163 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~~di~vig~d~ 223 (313)
T 3m9w_A 163 DQ-WVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDA 223 (313)
T ss_dssp EE-ECGGGCHHHHHHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTCTTTSEECCCSC
T ss_pred ec-cCCCcCHHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCCCCCcEEEecCC
Confidence 21 1111111111 1223333 478999999988888888888776543 577777764
No 90
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=85.60 E-value=1.4 Score=38.99 Aligned_cols=174 Identities=10% Similarity=-0.016 Sum_probs=93.8
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.++.... ..+.+...+. +....+|.||+.+...-....+.+.+ .+++++.+|....
T Consensus 83 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 152 (339)
T 3h5o_A 83 GIETVLDAAGYQMLIGNS-----HYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQ---HALPVVYMMDLAD-- 152 (339)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHHHHHHH---TTCCEEEEESCCS--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHHHHHhc---CCCCEEEEeecCC--
Confidence 455677788988764332 1122221222 23468999999875443334444444 3577888875321
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 213 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~ 213 (300)
. +.. .+..+.+. +...++.|.+. +.++|.++.+... ..-+.+.|++.|.......+.. .
T Consensus 153 ---~------~~~-~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~--~ 218 (339)
T 3h5o_A 153 ---D------GRC-CVGFSQEDAGAAITRHLLSR--GKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLD--P 218 (339)
T ss_dssp ---S------SCC-EEECCHHHHHHHHHHHHHHT--TCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEE--C
T ss_pred ---C------CCe-EEEECHHHHHHHHHHHHHHC--CCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEe--c
Confidence 1 111 12233222 34455566554 3468999987642 2246677888887221111111 1
Q ss_pred CCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCH
Q 022234 214 VHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 261 (300)
Q Consensus 214 ~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~ 261 (300)
.....+ ++++...++|+|+..+-..+-..+..+.+.+. .++.+++++.
T Consensus 219 ~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvvgfD~ 276 (339)
T 3h5o_A 219 QPSSMQMGADMLDRALAERPDCDALFCCNDDLAIGALARSQQLGIAVPERLAIAGFND 276 (339)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 112211 12222247899999998888777777776652 3677777754
No 91
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=85.17 E-value=6.2 Score=34.45 Aligned_cols=174 Identities=11% Similarity=0.077 Sum_probs=91.7
Q ss_pred HHHHHhC-CCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 66 IKALAKH-RIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 66 ~~~L~~~-G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
.+.++++ |++++.... ..+.+...+. +....+|.||+.+... .....+.+.+ .++++++++.....
T Consensus 28 ~~~a~~~~g~~l~i~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 99 (325)
T 2x7x_A 28 LREAMFYNGVSVEIRSA-----GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEAYQ---KGIPVILVDRKILS 99 (325)
T ss_dssp HHHHTTSSSCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH---TTCCEEEESSCCSS
T ss_pred HHHHHHcCCcEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH---CCCeEEEeCCCCCC
Confidence 3455566 887664321 1222211112 2246799999976432 2334444443 36789999864311
Q ss_pred HHHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhC-CCeeEEEEeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNTYT 210 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~~~vY~ 210 (300)
.. .+.. +..+.+ .+..+++.|.+.....++|+++.+.... .-+.+.|++. |+.+.. ++.
T Consensus 100 ---~~------~~~~-V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~--~~~ 167 (325)
T 2x7x_A 100 ---DK------YTAY-IGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLID--KAD 167 (325)
T ss_dssp ---SC------SSEE-EEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEE--EEE
T ss_pred ---cc------eeEE-EecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--eec
Confidence 01 1211 222222 2344555565532234689999886432 2456677777 766543 221
Q ss_pred eeeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHH
Q 022234 211 TEPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 262 (300)
Q Consensus 211 ~~~~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~ 262 (300)
.....+ ++++.-.++|+|+.++-..+-.+++.+.+.+. .++.+++++..
T Consensus 168 ---~~~~~~~~~~~~~~ll~~~~~~~aI~~~nd~~A~g~~~al~~~Gip~dv~vig~D~~ 224 (325)
T 2x7x_A 168 ---AAWERGPAEIEMDSMLRRHPKIDAVYAHNDRIAPGAYQAAKMAGREKEMIFVGIDAL 224 (325)
T ss_dssp ---CTTSHHHHHHHHHHHHHHCSCCCEEEESSTTHHHHHHHHHHHTTCTTSSEEEEEECC
T ss_pred ---CCCCHHHHHHHHHHHHHhCCCCCEEEECCCchHHHHHHHHHHcCCCCCeEEEEECCC
Confidence 122211 12222246899999988777777777666543 36778777544
No 92
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=84.99 E-value=3.5 Score=32.15 Aligned_cols=113 Identities=13% Similarity=0.009 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeee--e-----------CCCCcHHHHHH--cCCCCEEEEEChHHH-
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE--P-----------VHHVDQTVLKQ--ALSIPVVAVASPSAV- 239 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~--~-----------~~~~~~~~~~~--l~~~d~IvftS~s~v- 239 (300)
.+.+++++++..-...+...|.+.|++|.-+..-... . ......+.+.. +.+.|+|+.+.+...
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~ 97 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDST 97 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHH
Confidence 3567877766554556777788888655433221000 0 00011122222 346888888776432
Q ss_pred -HHHHHHhcccCCCCceEE--EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHH
Q 022234 240 -RSWVNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 290 (300)
Q Consensus 240 -~~~~~~~~~~~~~~~~vv--~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai 290 (300)
.......+... ....++ +-++...+.+++.|.. ++.|..-....+.+.|
T Consensus 98 ~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~l~~~G~~-vi~p~~~~a~~l~~~l 149 (155)
T 2g1u_A 98 NFFISMNARYMF-NVENVIARVYDPEKIKIFEENGIK-TICPAVLMIEKVKEFI 149 (155)
T ss_dssp HHHHHHHHHHTS-CCSEEEEECSSGGGHHHHHTTTCE-EECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHCCCc-EEcHHHHHHHHHHHHH
Confidence 22233333211 233444 4578888899999998 6655544444444433
No 93
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=84.79 E-value=5.6 Score=29.82 Aligned_cols=64 Identities=11% Similarity=0.057 Sum_probs=36.3
Q ss_pred cCCCCEEEEEChHH--HH-HHHHHhcccCCCCceEE--EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHH
Q 022234 225 ALSIPVVAVASPSA--VR-SWVNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 290 (300)
Q Consensus 225 l~~~d~IvftS~s~--v~-~~~~~~~~~~~~~~~vv--~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai 290 (300)
+.+.|+|+.+.+.. .. .........+. + +++ +-++...+.+++.|...++.|....-..+.+.+
T Consensus 68 ~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~-~-~ii~~~~~~~~~~~l~~~g~~~vi~p~~~~~~~l~~~~ 136 (144)
T 2hmt_A 68 IRNFEYVIVAIGANIQASTLTTLLLKELDI-P-NIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSL 136 (144)
T ss_dssp GGGCSEEEECCCSCHHHHHHHHHHHHHTTC-S-EEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHHHHHcCC-C-eEEEEeCCHHHHHHHHHcCCCEEECccHHHHHHHHHHH
Confidence 35789988887742 22 22333333322 2 444 457777888999999876654443333444433
No 94
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=84.46 E-value=7.6 Score=29.39 Aligned_cols=68 Identities=6% Similarity=0.062 Sum_probs=39.9
Q ss_pred CCCCEEEEEChHHHHHHH--HHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 226 LSIPVVAVASPSAVRSWV--NLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~--~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
.+.|+++.+.++...+.. ..+++.....+.+.+-++.-.+.+++.|...++.|+. ...+.+.+.+..|
T Consensus 69 ~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~G~~~vi~p~~----~~~~~l~~~i~~p 138 (141)
T 3llv_A 69 EGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVAD----AVKQAFMDKIKKM 138 (141)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHTTCSEEEEHHH----HHHHHHHHHHHHC
T ss_pred ccCCEEEEecCCHHHHHHHHHHHHHhCCceEEEEEcChhHHHHHHHcCCCEEECHHH----HHHHHHHHHHhCc
Confidence 578998888774433322 2232222123334456788889999999987665543 4445555555544
No 95
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=84.39 E-value=8.1 Score=34.19 Aligned_cols=174 Identities=10% Similarity=0.050 Sum_probs=92.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHH---HhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~---~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|++++.+.. ..+.+... +.+....+|.||+.+...-....+.+.+ .+++++++|.....
T Consensus 87 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~- 157 (348)
T 3bil_A 87 EIQSTASKAGLATIITNS-----NEDATTMSGSLEFLTSHGVDGIICVPNEECANQLEDLQK---QGMPVVLVDRELPG- 157 (348)
T ss_dssp HHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHHHH---C-CCEEEESSCCSC-
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEEcccCCC-
Confidence 344566788998875432 12222211 2223467999998765433333444444 35788999864311
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.. ++.. +..+.+. +...++.|.+. ..++|.++.+... ..-+.+.|++.|.+.. + ++.
T Consensus 158 --~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~-v~~-- 222 (348)
T 3bil_A 158 --DS------TIPT-ATSNPQPGIAAAVELLAHN--NALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQ-L-VFL-- 222 (348)
T ss_dssp --C-------CCCE-EEEECHHHHHHHHHHHHHT--TCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCC-E-EEC--
T ss_pred --CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCcc-E-EEc--
Confidence 02 2221 1222222 34455666654 3478999988743 2346677888886322 1 221
Q ss_pred eCCCCcH---HHHHH-c--CCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHHH
Q 022234 213 PVHHVDQ---TVLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 263 (300)
Q Consensus 213 ~~~~~~~---~~~~~-l--~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~T 263 (300)
.....+ +..+. + ..+ +|+..+-..+-..+..+.+.+. .++.++.++..-
T Consensus 223 -~~~~~~~~~~~~~~ll~~~~~-ai~~~nD~~A~g~~~al~~~G~~vP~disvvG~D~~~ 280 (348)
T 3bil_A 223 -GGYEQSVGFEGATKLLDQGAK-TLFAGDSMMTIGVIEACHKAGLVIGKDVSVIGFDTHP 280 (348)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCS-EEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCG
T ss_pred -CCCCHHHHHHHHHHHHcCCCC-EEEEcChHHHHHHHHHHHHcCCCCCCCeEEEEeCCcH
Confidence 111211 11222 2 136 7777777777777777766552 467788886543
No 96
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=83.20 E-value=8.5 Score=32.00 Aligned_cols=171 Identities=9% Similarity=0.029 Sum_probs=95.8
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchh---HHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~---l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.+..++. ..+.+. ..+.+....+|.||+.+..... ...+.+ .+.+++++|...
T Consensus 23 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~~~l~~---~~~pvV~~~~~~--- 89 (255)
T 1byk_A 23 TMLPAFYEQGYDPIMMES-----QFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT--EEMLAH---WQSSLVLLARDA--- 89 (255)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHTTTCCEEEEECCTTCC--TTTSGG---GSSSEEEESSCC---
T ss_pred HHHHHHHHcCCEEEEEeC-----CCcHHHHHHHHHHHHhcCCCEEEEecCcccc--HHHHHh---cCCCEEEEcccc---
Confidence 445667788998765532 112221 1122234679999998743211 011222 246788888642
Q ss_pred HHHHhhccCCCccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCC-C-------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~-~-------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
. ++.. +..+.+ .+..+++.|.+. +.++|.++.+.. . ..-+.+.|++.|..+.. ++
T Consensus 90 ---~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~--~~-- 153 (255)
T 1byk_A 90 ---K------GFAS-VCYDDEGAIKILMQRLYDQ--GHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA--AL-- 153 (255)
T ss_dssp ---S------SCEE-EEECHHHHHHHHHHHHHHT--TCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEE--EC--
T ss_pred ---C------CCCE-EEEccHHHHHHHHHHHHHc--CCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcce--ee--
Confidence 2 3322 122222 234455666654 347899998752 2 23466788899976532 11
Q ss_pred eeCCCCcHHH---HHHc--CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHH
Q 022234 212 EPVHHVDQTV---LKQA--LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTAS 265 (300)
Q Consensus 212 ~~~~~~~~~~---~~~l--~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~ 265 (300)
.....+.. .+.+ .++++|+..+-..+..+++.+.+.+..++.+++++.....
T Consensus 154 --~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~A~g~~~al~~~g~~di~vig~d~~~~~ 210 (255)
T 1byk_A 154 --PGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLM 210 (255)
T ss_dssp --CCSCHHHHHHHSGGGCCTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEECCCHHH
T ss_pred --cCCccchHHHHHHHHhcCCCCEEEEeChHHHHHHHHHHHHcCCCcEEEEEeCCchhh
Confidence 12222211 1222 3689999999888888888777665557889998765433
No 97
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=82.55 E-value=1.4 Score=37.73 Aligned_cols=178 Identities=13% Similarity=0.068 Sum_probs=94.1
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHH---HhhhcCCccEEEEeChHHH--HHHHHHHHHcCCCCceEEEEccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNDTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~---~~l~~~~~d~ivFTS~~av--~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.+.+.++++|+++..+..- ...+.+... +.+....+|.||+.+...- ....+.+.+ .+++++++|....
T Consensus 28 gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 101 (289)
T 3brs_A 28 GAQMAAKEYEIKLEFMAPE---KEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKD---AGIKLIVIDSGMK 101 (289)
T ss_dssp HHHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHTTTGG---GTCEEEEESSCCS
T ss_pred HHHHHHHHcCCEEEEecCC---CCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHH---CCCcEEEECCCCC
Confidence 3455677789876553321 011222111 1222467999999765432 122222222 3688999986431
Q ss_pred HHHHHHhhccCCC-ccccccCCCC-cHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEee
Q 022234 139 SIFEEVIQSSKCS-LDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 139 ~~L~~~~~~~~~G-~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY 209 (300)
.. + +. .+..+.+ .+..+++.|.+.....++|.++.+.... .-+.+.|++.|..+.. ++
T Consensus 102 ----~~------~~~~-~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~ 168 (289)
T 3brs_A 102 ----QD------IADI-TVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEA--IY 168 (289)
T ss_dssp ----SC------CCSE-EEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEE--EE
T ss_pred ----CC------cceE-EEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEe--ee
Confidence 11 2 22 1223322 2344556665532124799999876432 3456678888765433 22
Q ss_pred eeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHH
Q 022234 210 TTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT 263 (300)
Q Consensus 210 ~~~~~~~~~~---~----~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~T 263 (300)
. .....+ + +++.-.++|+|+.++-..+...++.+.+.+. .++.+++++...
T Consensus 169 ~---~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~~~di~vvg~d~~~ 227 (289)
T 3brs_A 169 Y---CDSNYDKAYDGTVELLTKYPDISVMVGLNQYSATGAARAIKDMSLEAKVKLVCIDSSM 227 (289)
T ss_dssp E---CTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEEESCS
T ss_pred c---CCCCHHHHHHHHHHHHHhCCCceEEEECCCcchHHHHHHHHhcCCCCCEEEEEECCCH
Confidence 1 122221 1 1221235889999888877777777766543 367888886544
No 98
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=82.51 E-value=12 Score=32.95 Aligned_cols=150 Identities=17% Similarity=0.018 Sum_probs=85.3
Q ss_pred hcCCccEEEE-eChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCC
Q 022234 98 NDTIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK 175 (300)
Q Consensus 98 ~~~~~d~ivF-TS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~ 175 (300)
.....+.||- .+..........+.+. +++++..+..+...-... ..-....|.. ..+..+++.+.+.
T Consensus 69 ~~~~v~~iiG~~~s~~~~~~~~~~~~~---~ip~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~-- 137 (368)
T 4eyg_A 69 VNDKVNVIAGFGITPAALAAAPLATQA---KVPEIVMAAGTSIITERS------PYIVRTSFTLAQSSIIIGDWAAKN-- 137 (368)
T ss_dssp HTSCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCCCGGGGGGC------TTEEESSCCHHHHHHHHHHHHHHT--
T ss_pred hcCCcEEEECCCccHHHHHHHHHHHhC---CceEEeccCCChhhccCC------CCEEEecCChHHHHHHHHHHHHHc--
Confidence 3467898884 4555555566656554 466777664432211111 2211223332 2245566666654
Q ss_pred CCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEE-EChHHHHHHHHHhc
Q 022234 176 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLIS 247 (300)
Q Consensus 176 ~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivf-tS~s~v~~~~~~~~ 247 (300)
..+++.++..+.. .+.+.+.|++.|+.+.....|.... .+....+..+ .++|+|++ .+...+..++..+.
T Consensus 138 g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~ 215 (368)
T 4eyg_A 138 GIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLAN--PDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFA 215 (368)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSS--CCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC--CcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHH
Confidence 3478888765432 3567788999998876665555322 2222233333 37898887 66667777887777
Q ss_pred ccCCC--CceEEEeC
Q 022234 248 DTEQW--SNSVACIG 260 (300)
Q Consensus 248 ~~~~~--~~~vv~IG 260 (300)
+.+.. +++++..+
T Consensus 216 ~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 216 ERGLDKSGIKVIGPG 230 (368)
T ss_dssp HTTGGGTTCEEEEET
T ss_pred HcCCCcCCceEEecC
Confidence 65432 26777765
No 99
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=82.51 E-value=8.4 Score=29.37 Aligned_cols=112 Identities=11% Similarity=0.125 Sum_probs=69.4
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeeee------------EeeeC--CCchhHHHhhhcCCccEEEEeChHHHHHH
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQG--PDTDRLSSVLNDTIFDWIIITSPEAGSVF 116 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i------------~~~~~--~~~~~l~~~l~~~~~d~ivFTS~~av~~~ 116 (300)
.+|+|.....-...+++.|.+.|+++..+-.- ..... .+.+.+.+ ......|++|.+.++.....
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~-a~i~~ad~vi~~~~~~~~n~ 86 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQL-AHLECAKWLILTIPNGYEAG 86 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHH-TTGGGCSEEEECCSCHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHh-cCcccCCEEEEECCChHHHH
Confidence 56888877666788999999999887765321 11111 11111211 13467899999888665443
Q ss_pred --HHHHHHcCCCCceEEEE--ccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhc
Q 022234 117 --LEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 170 (300)
Q Consensus 117 --~~~l~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 170 (300)
...+++.. .+.++++. ++...+.|++. |.+..+.|....++.+++.+
T Consensus 87 ~~~~~a~~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~~a~~i~~~l 137 (140)
T 3fwz_A 87 EIVASARAKN-PDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELL 137 (140)
T ss_dssp HHHHHHHHHC-SSSEEEEEESSHHHHHHHHHT------TCSEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCCEEECchHHHHHHHHHHh
Confidence 33344433 34566654 45667788888 99877777776777777655
No 100
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=82.32 E-value=13 Score=27.58 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=32.5
Q ss_pred cCCCCEEEEEChHHHH--HHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecC
Q 022234 225 ALSIPVVAVASPSAVR--SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT 279 (300)
Q Consensus 225 l~~~d~IvftS~s~v~--~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~ 279 (300)
+.+.|+|+.+.+.... .+....+..+...+.+.+-++...+.+++.|...++.|+
T Consensus 67 ~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~~v~~p~ 123 (140)
T 1lss_A 67 IEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE 123 (140)
T ss_dssp TTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred cccCCEEEEeeCCchHHHHHHHHHHHcCCCEEEEEecCHhHHHHHHHcCCCEEECHH
Confidence 4578988888664322 222333332222333445678888899999998665444
No 101
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=82.30 E-value=14 Score=27.97 Aligned_cols=110 Identities=5% Similarity=0.037 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHHhccc
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDT 249 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS----~s~v~~~~~~~~~~ 249 (300)
..+||++..+.. +..|.+.|+..|+.|.. + ....+.++.+ ..+|+|++-- ..+.+ ++..+...
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~---~------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~-~~~~lr~~ 76 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEH---V------RNGREAVRFLSLTRPDLIISDVLMPEMDGYA-LCRWLKGQ 76 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEE---E------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHH-HHHHHHHS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEE---e------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-HHHHHHhC
Confidence 468999987764 67788899988865421 1 1223334433 3688888753 22333 44444433
Q ss_pred C-CCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 250 E-QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 250 ~-~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
. ..++++++++ +.....+.+.|..- ++....+.+.|.+.|...+...
T Consensus 77 ~~~~~~pii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 77 PDLRTIPVILLTILSDPRDVVRSLECGADD-FITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp TTTTTSCEEEEECCCSHHHHHHHHHHCCSE-EEESSCCHHHHHHHHHHHHHHT
T ss_pred CCcCCCCEEEEECCCChHHHHHHHHCCCCE-EEeCCCCHHHHHHHHHHHHHHH
Confidence 2 2456666653 44555666789864 6677779999999999887654
No 102
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=82.18 E-value=6.1 Score=30.58 Aligned_cols=66 Identities=8% Similarity=-0.069 Sum_probs=37.2
Q ss_pred cCCCCEEEEEChHHHHHHH-H-HhcccCCCCceEE--EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 225 ALSIPVVAVASPSAVRSWV-N-LISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~-~-~~~~~~~~~~~vv--~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
+.+.|+|+.+.+....+.. . ..+... ...+++ +-++...+.+++.|...++.|. ....+.+.+.+.
T Consensus 69 i~~ad~vi~~~~~d~~n~~~~~~a~~~~-~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~----~~~~~~l~~~~~ 138 (153)
T 1id1_A 69 IDRCRAILALSDNDADNAFVVLSAKDMS-SDVKTVLAVSDSKNLNKIKMVHPDIILSPQ----LFGSEILARVLN 138 (153)
T ss_dssp TTTCSEEEECSSCHHHHHHHHHHHHHHT-SSSCEEEECSSGGGHHHHHTTCCSEEECHH----HHHHHHHHHHHT
T ss_pred hhhCCEEEEecCChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHcCCCEEEcHH----HHHHHHHHHHHh
Confidence 5688988888664433332 2 222221 233444 4578888899999998655332 333344444443
No 103
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=82.18 E-value=4.2 Score=34.62 Aligned_cols=175 Identities=13% Similarity=0.066 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHH---HhhhcCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNDTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~---~~l~~~~~d~ivFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.+.+.++++|++++.+.. ..+.+... +.+....+|.||+.+.. ......+.+.+ .++++++++....
T Consensus 23 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 94 (290)
T 2fn9_A 23 TAKQRAEQLGYEATIFDS-----QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKE---AGIPVFCVDRGIN 94 (290)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHH---TTCCEEEESSCCS
T ss_pred HHHHHHHHcCCEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH---CCCeEEEEecCCC
Confidence 445667788988764321 12222111 12224679999987543 22233444444 3578888886431
Q ss_pred HHHHHHhhccCCCcccc-ccCCCCc-HHHHHHhcccCCC----CCCE--EEEEcCCCC-------hhHHHHHHHhC-CCe
Q 022234 139 SIFEEVIQSSKCSLDVA-FSPSKAT-GKILASELPKNGK----KKCT--VLYPASAKA-------SNEIEEGLSNR-GFE 202 (300)
Q Consensus 139 ~~L~~~~~~~~~G~~~~-~~p~~~~-~e~L~~~L~~~~~----~~~~--vL~~rg~~~-------~~~L~~~L~~~-G~~ 202 (300)
.. +.... +..+.+. +..+++.|.+... ..++ ++++.|... ..-+.+.|++. |++
T Consensus 95 ----~~------~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~ 164 (290)
T 2fn9_A 95 ----AR------GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFK 164 (290)
T ss_dssp ----CS------SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEE
T ss_pred ----CC------CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCE
Confidence 11 21111 2222222 3344455544310 1245 888877543 22356677777 765
Q ss_pred eEEEEeeeeeeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCH
Q 022234 203 VVRLNTYTTEPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 261 (300)
Q Consensus 203 v~~~~vY~~~~~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~ 261 (300)
+.. ++. .....+ ++++...++|+|+..+-..+..+++.+.+.+..++.+++++.
T Consensus 165 ~~~--~~~---~~~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~a~g~~~al~~~g~~dv~vig~d~ 225 (290)
T 2fn9_A 165 MVA--QQS---AEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDG 225 (290)
T ss_dssp EEE--EEE---CTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTCEEECCBC
T ss_pred EEE--ecc---CCCCHHHHHHHHHHHHHhCCCCcEEEECCchHHHHHHHHHHHCCCCCeEEEEeCC
Confidence 532 222 122221 122222468999999988877787777765544677877754
No 104
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=82.17 E-value=9.9 Score=32.40 Aligned_cols=183 Identities=10% Similarity=0.049 Sum_probs=97.9
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEccchH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.+.+.++++|++++.... ....+.+...+.+ .....|.||+.+... .....+.+.+ .++++++++....
T Consensus 22 gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 95 (288)
T 1gud_A 22 GIEDEAKTLGVSVDIFAS---PSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWK---KGIYLVNLDEKID 95 (288)
T ss_dssp HHHHHHHHHTCCEEEEEC---SSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHH---TTCEEEEESSCCC
T ss_pred HHHHHHHHcCCEEEEeCC---CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCeEEEECCCCC
Confidence 345567788988765431 0111222111122 246799999976532 2223344443 3689999987532
Q ss_pred -HHHHHHhhccCCCccc-cc-cCCCCc-HHHHHHhcccCCC-CCCEEEEEcCCCCh-------hHHHHHHHhC-CCeeEE
Q 022234 139 -SIFEEVIQSSKCSLDV-AF-SPSKAT-GKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVR 205 (300)
Q Consensus 139 -~~L~~~~~~~~~G~~~-~~-~p~~~~-~e~L~~~L~~~~~-~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~ 205 (300)
...+.. |... .+ ..+.+. +...++.|.+... ..++|.++.|.... .-+.+.|++. |+.+..
T Consensus 96 ~~~~~~~------~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~ 169 (288)
T 1gud_A 96 MDNLKKA------GGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVA 169 (288)
T ss_dssp HHHHHHT------TCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred ccccccc------CCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEE
Confidence 223333 4332 22 233222 2334444544311 13689999886532 2356778777 765432
Q ss_pred EEeeeeeeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCC-CCceEEEeCHHH
Q 022234 206 LNTYTTEPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT 263 (300)
Q Consensus 206 ~~vY~~~~~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~-~~~~vv~IG~~T 263 (300)
++ ......+ ++++.-.++++|+.++-..+-..++.+.+.+. .++.++.++..-
T Consensus 170 --~~---~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~~dv~vvGfD~~~ 230 (288)
T 1gud_A 170 --SQ---PADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIP 230 (288)
T ss_dssp --EE---ECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCH
T ss_pred --ee---cCCccHHHHHHHHHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCCCCeEEEEeCCCH
Confidence 21 1122221 12222246899999998888888887776654 368888886543
No 105
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=82.14 E-value=13 Score=28.66 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=67.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeee----------------EeeeCC--CchhHHHhhhcCCccEEEEeCh
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI----------------QHAQGP--DTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i----------------~~~~~~--~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
.+++|+|.....-...+++.|.+.|.++..+--- .+...+ +.+.+.+. .....|+||.+.+
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a-~i~~ad~vi~~~~ 80 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA-GIDRCRAILALSD 80 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH-TTTTCSEEEECSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHc-ChhhCCEEEEecC
Confidence 3567888876656678889999999887755221 111111 11222221 3568899999876
Q ss_pred HHHHHHH--HHHHHcCCCCceEEE--EccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 111 EAGSVFL--EAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 111 ~av~~~~--~~l~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
+.-.... ..+++.. ...++++ -++...+.+++. |....+.|....++.|++.+.
T Consensus 81 ~d~~n~~~~~~a~~~~-~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~~~ 138 (153)
T 1id1_A 81 NDADNAFVVLSAKDMS-SDVKTVLAVSDSKNLNKIKMV------HPDIILSPQLFGSEILARVLN 138 (153)
T ss_dssp CHHHHHHHHHHHHHHT-SSSCEEEECSSGGGHHHHHTT------CCSEEECHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHc------CCCEEEcHHHHHHHHHHHHHh
Confidence 5433322 2233332 2344554 466777888887 987666666556666666554
No 106
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=81.88 E-value=7.4 Score=33.89 Aligned_cols=198 Identities=12% Similarity=0.071 Sum_probs=100.0
Q ss_pred CeEEEeCCCCch-------HHHHHHHHhCCCCEEEe-eeeEeeeCCCchh----HHHhhhcCCccEEEEeChH--HHHHH
Q 022234 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLEL-PLIQHAQGPDTDR----LSSVLNDTIFDWIIITSPE--AGSVF 116 (300)
Q Consensus 51 ~~VlitR~~~~~-------~~l~~~L~~~G~~v~~~-P~i~~~~~~~~~~----l~~~l~~~~~d~ivFTS~~--av~~~ 116 (300)
++|.+.-+...+ ..+.+.++++|+++... +. ..+.+. ++.. ....+|.||+.+.. ++...
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~-----~~d~~~q~~~i~~l-i~~~vdgiii~~~~~~~~~~~ 77 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPT-----EPSVSGQVQLVNNF-VNQGYDAIIVSAVSPDGLCPA 77 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCS-----SCCHHHHHHHHHHH-HHTTCSEEEECCSSSSTTHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCC-----CCCHHHHHHHHHHH-HHcCCCEEEEeCCCHHHHHHH
Confidence 456665544322 33455677789776543 21 122221 2222 24679999987643 33444
Q ss_pred HHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccc-cCCCC-cHHHHHHhcccCCC-CCCEEEEEcCCCCh----
Q 022234 117 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF-SPSKA-TGKILASELPKNGK-KKCTVLYPASAKAS---- 189 (300)
Q Consensus 117 ~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~-~p~~~-~~e~L~~~L~~~~~-~~~~vL~~rg~~~~---- 189 (300)
.+.+.+ .++++++++..... . +....+ ..+.. .+....+.|.+... ..+++.++.|....
T Consensus 78 ~~~a~~---~gipvV~~d~~~~~----~------~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~ 144 (316)
T 1tjy_A 78 LKRAMQ---RGVKILTWDSDTKP----E------CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQN 144 (316)
T ss_dssp HHHHHH---TTCEEEEESSCCCG----G------GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHH
T ss_pred HHHHHH---CcCEEEEecCCCCC----C------CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHH
Confidence 444544 36889998764311 1 111112 22222 23334444544211 34689999886542
Q ss_pred ---hHHHHHHHhCCCeeEEEEeeeeeeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEe
Q 022234 190 ---NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI 259 (300)
Q Consensus 190 ---~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~I 259 (300)
.-+.+.|++.+..+..+..+. .....+ +++....++++|+..+-..+...++.+.+.+..++.++.+
T Consensus 145 ~r~~g~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~~~~~~aI~~~nD~~A~g~~~al~~~G~~dv~VvG~ 221 (316)
T 1tjy_A 145 QWVKEAKAKISQEHPGWEIVTTQF---GYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGF 221 (316)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEE---CTTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHHHHHHHHHTTCCSCEEEEB
T ss_pred HHHHHHHHHHHhhCCCcEEEEecc---CCCCHHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHHcCCCCEEEEEe
Confidence 234556765532333233221 122221 1222224689999988776666666665544135788888
Q ss_pred CHH--HHHHHHHcC
Q 022234 260 GET--TASAAKRLG 271 (300)
Q Consensus 260 G~~--Ta~~l~~~G 271 (300)
+.. ..+.+.. |
T Consensus 222 D~~~~~~~~i~~-g 234 (316)
T 1tjy_A 222 STPNVMRPYVQR-G 234 (316)
T ss_dssp CCHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHC-C
Confidence 754 3455543 6
No 107
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=81.69 E-value=15 Score=31.51 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=69.5
Q ss_pred CCCeEEEeCCCCc-----hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh-----HHHHHHHH
Q 022234 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP-----EAGSVFLE 118 (300)
Q Consensus 49 ~g~~VlitR~~~~-----~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~-----~av~~~~~ 118 (300)
.+.+|++..+.++ ..-++..|+.+|++|+.+..- .| .+++.+.....+.|.|.+++. ..++.+.+
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~--vp---~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~ 196 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD--VP---AEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVND 196 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE--CC---SHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHH
Confidence 3567887766543 346778889999999988763 22 234444444567899988773 34566777
Q ss_pred HHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 119 AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 119 ~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
.+++.+.+ +++++-|....+.+.+.. |.. .+.++...+-.++..+.
T Consensus 197 ~l~~~~~~-~~v~vGG~~~~~~~~~~i-----gad-~~~~da~~av~~~~~l~ 242 (258)
T 2i2x_B 197 MLLENGIK-IPFACGGGAVNQDFVSQF-----ALG-VYGEEAADAPKIADAII 242 (258)
T ss_dssp HHHTTTCC-CCEEEESTTCCHHHHHTS-----TTE-EECSSTTHHHHHHHHHH
T ss_pred HHHhcCCC-CcEEEECccCCHHHHHHc-----CCe-EEECCHHHHHHHHHHHH
Confidence 77776654 999999977655544432 643 23444444444544443
No 108
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=81.64 E-value=8.9 Score=28.95 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=53.9
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChH---------HHHHHHHHhcccCCCCceEEEeC
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS---------AVRSWVNLISDTEQWSNSVACIG 260 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s---------~v~~~~~~~~~~~~~~~~vv~IG 260 (300)
+.+.+.|.+.|++|+.+.+-+. .. ..+.+.|.|+|-||. .++.|++.+... +.+.+++++|
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~-----~~----~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~ 86 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDV-----NI----DELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFG 86 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGC-----CH----HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEhhhC-----CH----HHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEE
Confidence 3566677888877654433211 11 124678988888873 588888877643 2344444332
Q ss_pred ----------HHHHHHHHHcCCCe----EEecCCCCHHHHHHHHHHHH
Q 022234 261 ----------ETTASAAKRLGLKN----VYYPTHPGLEGWVDSILEAL 294 (300)
Q Consensus 261 ----------~~Ta~~l~~~G~~~----~~v~~~p~~~~l~~ai~~~~ 294 (300)
....+.+++.|+++ ..+-..|+.++ +.+.++-
T Consensus 87 t~g~~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d--~~~~~~~ 132 (138)
T 5nul_A 87 SYGWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE--QDCIEFG 132 (138)
T ss_dssp EESSSCSHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH--HHHHHHH
T ss_pred ecCCCCChHHHHHHHHHHHCCCEEECCceEEecCCCHHH--HHHHHHH
Confidence 23445566678864 23446677766 6666553
No 109
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=81.55 E-value=36 Score=32.37 Aligned_cols=193 Identities=17% Similarity=0.180 Sum_probs=107.7
Q ss_pred chHHHHHHHHhCCCCEEEe-eeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEc-cch
Q 022234 61 KNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AGT 137 (300)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~-P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~~~i~aVG-~~T 137 (300)
+..++.+.|++.|+++..+ | .....+++. +.++.+.-+..++..-....+.|++. +.+-....-+| ..|
T Consensus 171 D~~eikrlL~~~Gi~v~~~~p-----gg~t~~ei~---~~~~A~~niv~~~~~g~~~A~~Le~r~GiP~i~~~PiG~~~T 242 (525)
T 3aek_B 171 DVAEVTKLLATMGIKVNVCAP-----LGASPDDLR---KLGQAHFNVLMYPETGESAARHLERACKQPFTKIVPIGVGAT 242 (525)
T ss_dssp HHHHHHHHHHTTTCEEEEEEE-----TTCCHHHHH---TGGGSSEEEECCHHHHHHHHHHHHHHSCCCBCCCCCCSHHHH
T ss_pred hHHHHHHHHHHCCCeEEEEeC-----CCCCHHHHH---hhccCCEEEEEChhhHHHHHHHHHHHcCCCceecCCcCHHHH
Confidence 4579999999999999873 3 111233332 45566777777877667777777553 44433445678 678
Q ss_pred HHHHHHHhhccCCCccccccCC-CCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHH-HhCCCeeEEEEeeeeeeCC
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNTYTTEPVH 215 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L-~~~G~~v~~~~vY~~~~~~ 215 (300)
.+.|++.. .+.|... ..-. .....-+...+......|+++++..+..-.-.|...| .+.|++|..+-.|..
T Consensus 243 ~~~Lr~ia--~~~g~~~-~i~~~r~~~~~~~~~~d~~~l~GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~~~---- 315 (525)
T 3aek_B 243 RDFLAEVS--KITGLPV-VTDESTLRQPWWSASVDSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCYNR---- 315 (525)
T ss_dssp HHHHHHHH--HHHCCCC-CCCCTTCCHHHHHHSGGGGGGTTCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEESCG----
T ss_pred HHHHHHHH--HHHCCCH-HHHHHHHHHHHHHHhhhhhhcCCCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecCch----
Confidence 88777752 1115443 2211 1111111212222223678999886666666788889 799999865555432
Q ss_pred CCcHH---HHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 216 HVDQT---VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 216 ~~~~~---~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
...+. .++.. ..++++......++.++... +.-++.-|..-...+++.|+...
T Consensus 316 ~~~~~~~~~~~~~-~~~v~i~~D~~el~~~i~~~------~pDL~ig~~~~~~~a~~~giP~~ 371 (525)
T 3aek_B 316 EMARPLRTAAAEY-GLEALITDDYLEVEKAIEAA------APELILGTQMERNIAKKLGLPCA 371 (525)
T ss_dssp GGHHHHHHHHHHT-TCCCEECSCHHHHHHHHHHH------CCSEEEECHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHHHhc-CCcEEEeCCHHHHHHHHhhc------CCCEEEecchhHHHHHHcCCCEE
Confidence 11111 22222 22444444544444444332 23454555666667788888643
No 110
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=81.15 E-value=8.6 Score=31.75 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=59.4
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-----HHHHHHHH
Q 022234 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-----AGSVFLEA 119 (300)
Q Consensus 50 g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-----av~~~~~~ 119 (300)
+.+|++..+.+ +..-++..|+.+|++|+.+..- . ..+++.+.....++|.|.+++.. .++.+.+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~----v-p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD----I-EPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS----B-CHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCC----C-CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 45677765543 2456778899999999987741 1 12444444445588999988743 35666667
Q ss_pred HHHcCC-CCceEEEEccchHHHHHHH
Q 022234 120 WKEAGT-PNVRIGVVGAGTASIFEEV 144 (300)
Q Consensus 120 l~~~~~-~~~~i~aVG~~Ta~~L~~~ 144 (300)
+++.+. +++++++-|....+.+.+.
T Consensus 163 l~~~~~~~~~~v~vGG~~~~~~~~~~ 188 (210)
T 1y80_A 163 LIAAGLRDRVKVIVGGAPLSQDFADE 188 (210)
T ss_dssp HHHTTCGGGCEEEEESTTCCHHHHHH
T ss_pred HHhcCCCCCCeEEEECCCCCHHHHHH
Confidence 776654 4799999998765554433
No 111
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=81.04 E-value=13 Score=26.83 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=66.8
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEE----ChHHHHHHHHHhcccC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA----SPSAVRSWVNLISDTE 250 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivft----S~s~v~~~~~~~~~~~ 250 (300)
++||++-.+.. +..+...|+..|+.|.. + ....+.++.+ ..+|.|+.- ..++.+ +++.+....
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~---~------~~~~~al~~l~~~~~dlvllD~~~p~~~g~~-~~~~l~~~~ 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIE---A------ENGQIALEKLSEFTPDLIVLXIMMPVMDGFT-VLKKLQEKE 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE---E------SSHHHHHHHHTTBCCSEEEECSCCSSSCHHH-HHHHHHTST
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEE---e------CCHHHHHHHHHhcCCCEEEEeccCCCCcHHH-HHHHHHhcc
Confidence 57888877654 66788889988866531 1 1222333333 367877763 223344 344444322
Q ss_pred -CCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 251 -QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 251 -~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
..+.+++.++ +.....+.+.|..- ++....+.+.|.+.|.+.++
T Consensus 73 ~~~~~pii~~s~~~~~~~~~~~~~~Ga~~-~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 73 EWKRIPVIVLTAKGGEEDESLALSLGARK-VMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp TTTTSCEEEEESCCSHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHC
T ss_pred cccCCCEEEEecCCchHHHHHHHhcChhh-hccCCCCHHHHHHHHHHHhc
Confidence 2356666654 55666777889874 67777899999999988764
No 112
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=80.80 E-value=3.5 Score=36.63 Aligned_cols=172 Identities=10% Similarity=0.041 Sum_probs=89.9
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHh---hhcCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEccchHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNDTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 139 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~---l~~~~~d~ivFTS~~-av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 139 (300)
.+.+.++++|+.++.... . ..+.+...+. +....+|.||+.++. .-......+.. .+++++++|...
T Consensus 82 gi~~~a~~~g~~~~~~~~---~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~~---~~iPvV~i~~~~-- 152 (349)
T 1jye_A 82 AILSRADQLGASVVVSMV---E-RSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAAC---TNVPALFLDVSD-- 152 (349)
T ss_dssp HHHHHHHHTTCEEEEEEC---C-SSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHT---TTSCEEESSSCT--
T ss_pred HHHHHHHHcCCEEEEEeC---C-CCcHHHHHHHHHHHHHCCCCEEEEecCCCChhHHHHHHhh---CCCCEEEEcccC--
Confidence 345567788998765332 1 1111211112 224679999987432 21222222222 367899988532
Q ss_pred HHHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeee
Q 022234 140 IFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 140 ~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
.. ++.. +..+.+. +....+.|.+. +.++|.++.|.... .-+.+.|++.|+.+.. ++.
T Consensus 153 ---~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~--~~~- 217 (349)
T 1jye_A 153 ---QT------PINS-IIFSHEDGTRLGVEHLVAL--GHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIA--ERE- 217 (349)
T ss_dssp ---TS------SSCE-EEECHHHHHHHHHHHHHHH--TCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSE--EEE-
T ss_pred ---CC------CCCE-EEEchHHHHHHHHHHHHHC--CCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc--ccc-
Confidence 12 3322 1222222 23344555544 34789999886532 2466788888876432 221
Q ss_pred eeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCH
Q 022234 212 EPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 261 (300)
Q Consensus 212 ~~~~~~~~-------~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~ 261 (300)
.....+ ++++.-.++++|+..+-..+-..+..+.+.+. .++.++.++.
T Consensus 218 --~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvvGfD~ 275 (349)
T 1jye_A 218 --GDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDD 275 (349)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEECSBC
T ss_pred --CCCChHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCcEEEEEECC
Confidence 122221 11211136899999988877777777766542 3566666654
No 113
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=80.64 E-value=28 Score=30.48 Aligned_cols=148 Identities=11% Similarity=-0.006 Sum_probs=83.9
Q ss_pred hcCCccEEEE-eChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCC
Q 022234 98 NDTIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK 175 (300)
Q Consensus 98 ~~~~~d~ivF-TS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~ 175 (300)
.....+.||- .+..........+.+. +++++..+.... .+... . ..-....|.. ..+..+++.+.+..
T Consensus 78 ~~~~v~~iiG~~~s~~~~~~~~~~~~~---~iP~i~~~~~~~-~~~~~----~-~~~f~~~~~~~~~~~~~~~~l~~~~- 147 (366)
T 3td9_A 78 DKEKVLAIIGEVASAHSLAIAPIAEEN---KVPMVTPASTNP-LVTQG----R-KFVSRVCFIDPFQGAAMAVFAYKNL- 147 (366)
T ss_dssp HTSCCSEEEECSSHHHHHHHHHHHHHT---TCCEEESSCCCG-GGTTT----C-SSEEESSCCHHHHHHHHHHHHHHTS-
T ss_pred ccCCeEEEEccCCchhHHHHHHHHHhC---CCeEEecCCCCc-cccCC----C-CCEEEEeCCcHHHHHHHHHHHHHhc-
Confidence 3446899984 4555566666666553 567777665332 22111 0 1111123332 23455666664432
Q ss_pred CCCEEEEEcC-CC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEE-EChHHHHHHHHHh
Q 022234 176 KKCTVLYPAS-AK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLI 246 (300)
Q Consensus 176 ~~~~vL~~rg-~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivf-tS~s~v~~~~~~~ 246 (300)
..+++.++.+ .. ..+.+.+.|++.|+.+.... |... ..+....+..+ .++|+|++ .+...+..++..+
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 224 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG--DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQA 224 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT--CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC--CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHH
Confidence 3478888843 21 13467788999999886655 6542 22222333333 57899888 7888888888888
Q ss_pred cccCCCCceEEEe
Q 022234 247 SDTEQWSNSVACI 259 (300)
Q Consensus 247 ~~~~~~~~~vv~I 259 (300)
.+.+. +.+++..
T Consensus 225 ~~~g~-~~~~~~~ 236 (366)
T 3td9_A 225 RQLGF-TGYILAG 236 (366)
T ss_dssp HHTTC-CSEEEEC
T ss_pred HHcCC-CceEEee
Confidence 76543 4566543
No 114
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=80.46 E-value=6.1 Score=34.34 Aligned_cols=166 Identities=10% Similarity=0.012 Sum_probs=83.4
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
-+.+.++++|+++..+. ...+.+...+.+ ....+|.||+++..--..+.+ +. ....+++++.++...
T Consensus 28 gi~~~~~~~g~~~~~~~-----~~~~~~~~~~~l~~l~~~~vdgIi~~~~~~~~~~~~-~~-~~~p~~p~v~id~~~--- 97 (296)
T 2hqb_A 28 GLLNIHSNLDVDVVLEE-----GVNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFST-IH-NQYPDVHFVSFNGEV--- 97 (296)
T ss_dssp HHHHHHHHSCCEEEEEC-----CCCSHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHT-TT-TSCTTSEEEEESCCC---
T ss_pred HHHHHHHHhCCeEEEEe-----CCCCHHHHHHHHHHHHHCCCCEEEEcCHhHHHHHHH-HH-HHCCCCEEEEEecCc---
Confidence 44566778898765432 112212111222 246799999988653333222 11 112378899997642
Q ss_pred HHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC---hhHHHHHHHhCCCeeEEEEeeeeeeCCCC
Q 022234 141 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA---SNEIEEGLSNRGFEVVRLNTYTTEPVHHV 217 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~---~~~L~~~L~~~G~~v~~~~vY~~~~~~~~ 217 (300)
... .+.. +....+.+.-++-.+..+..+.++|.|+.|... ..-+.+.+++.|.+ ....+|........
T Consensus 98 -~~~------~~~~-v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~~r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~ 168 (296)
T 2hqb_A 98 -KGE------NITS-LHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQPEVEGFVDGAKYMNES-EAFVRYVGEWTDAD 168 (296)
T ss_dssp -CSS------SEEE-EEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTCHHHHHHHHHHHHTTCC-EEEEEECSSSSCHH
T ss_pred -CCC------CEEE-EEechHHHHHHHHHHHHhhccCCeEEEEcCcCchhhHHHHHHHHHHhCCC-eEEEEeeccccCHH
Confidence 111 3222 223333333333222222223479999988643 33466788888876 44444532111111
Q ss_pred -cHHHHHH-c-CCCCEEEEEChHHHHHHHHHhcc
Q 022234 218 -DQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISD 248 (300)
Q Consensus 218 -~~~~~~~-l-~~~d~IvftS~s~v~~~~~~~~~ 248 (300)
..+..+. + .++|+|+..+-..+-..++.+.+
T Consensus 169 ~g~~~a~~ll~~~~daI~~~~D~~a~Gv~~a~~e 202 (296)
T 2hqb_A 169 KALELFQELQKEQVDVFYPAGDGYHVPVVEAIKD 202 (296)
T ss_dssp HHHHHHHHHHTTTCCEEECCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHH
Confidence 1112222 2 36898888877665555555544
No 115
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=80.15 E-value=3.6 Score=38.45 Aligned_cols=201 Identities=10% Similarity=0.049 Sum_probs=108.2
Q ss_pred eEEEeCCCCch--HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCce
Q 022234 52 KVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 129 (300)
Q Consensus 52 ~VlitR~~~~~--~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~ 129 (300)
+|-+.-.-... .++.+.|++.|+++..+|... ..+++ -+.++.+.-+..++.. ....+.+++.+.+-+.
T Consensus 185 ~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-----~~~ei---~~~~~A~~niv~~~~~-~~~A~~Le~~GiP~i~ 255 (437)
T 3aek_A 185 ELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-----RSDIE---PAVGPNTRFILAQPFL-GETTGALERRGAKRIA 255 (437)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-----SGGGC---CCBCTTCEEEESSTTC-HHHHHHHHHTTCEECC
T ss_pred cEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-----CHHHH---HhhhcCcEEEEECccH-HHHHHHHHHcCCCeEe
Confidence 34444333333 699999999999999766422 22222 2456666666666666 5555556444433222
Q ss_pred E-EEEc-cchHHHHHHHhhccCCCccccccCCC---CcHHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHH-HhCCC
Q 022234 130 I-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSK---ATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGL-SNRGF 201 (300)
Q Consensus 130 i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~---~~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L-~~~G~ 201 (300)
. +-+| ..|.+.|++.. .+.|...... +. ..-..+...+.... ..|+++++..+..-.-.|...| .+.|+
T Consensus 256 ~~~P~G~~~T~~~l~~la--~~~g~~~~~~-e~~i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~l~~~L~~elG~ 332 (437)
T 3aek_A 256 APFPFGEEGTTLWLKAVA--DAYGVSAEKF-EAVTAAPRARAKKAIAAHLETLTGKSLFMFPDSQLEIPLARFLARECGM 332 (437)
T ss_dssp CCCSCHHHHHHHHHHHHH--HHTTCCHHHH-HHHHHHHHHHHHHHHHTTHHHHTTCEEEECSSSSCHHHHHHHHHHTTCC
T ss_pred cCCCcCHHHHHHHHHHHH--HHHCCChhhH-HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHHHHHHHHHHcCC
Confidence 2 2366 66788877762 1114332100 00 00112222332211 2578999998887788899999 99999
Q ss_pred eeEEEEe-eeeeeCCCCcHHHHHHcCCCCEEEEE--ChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCe
Q 022234 202 EVVRLNT-YTTEPVHHVDQTVLKQALSIPVVAVA--SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 202 ~v~~~~v-Y~~~~~~~~~~~~~~~l~~~d~Ivft--S~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
+|..+.+ |... ....+.++.+ ..+..+.. ...... +.+.+. +..++.-|......+.+.|+..
T Consensus 333 ~vv~~~~~~~~~---~~~~~~l~~l-~~~~~v~~~~d~~e~~---~~i~~~---~pDliig~~~~~~p~~~~G~P~ 398 (437)
T 3aek_A 333 KTTEIATPFLHK---AIMAPDLALL-PSNTALTEGQDLEAQL---DRHEAI---NPDLTVCGLGLANPLEAKGHAT 398 (437)
T ss_dssp EEEEEEESCCCH---HHHHHHHTTS-BTTCEEEEECCHHHHH---HHHHHH---CCSEEEECHHHHHHHHTTTCCE
T ss_pred EEEEEEecCCCH---HHHHHHHHhc-CCCCEEEeCCCHHHHH---HHHhcc---CCCEEEeCCccccHHHHCCCCE
Confidence 9877665 3221 1111122223 23444443 333333 333322 2345556666777888889874
No 116
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=79.41 E-value=30 Score=30.43 Aligned_cols=242 Identities=12% Similarity=0.035 Sum_probs=124.4
Q ss_pred CCCCCCeEEEe-CC-CCchHHHHHHHHhCCCCEE-Ee-eee---EeeeCCCchhHHHhhhcCCccEE-EEeChHHHHHHH
Q 022234 46 ASNSNPKVVVT-RE-RGKNGKLIKALAKHRIDCL-EL-PLI---QHAQGPDTDRLSSVLNDTIFDWI-IITSPEAGSVFL 117 (300)
Q Consensus 46 ~~l~g~~Vlit-R~-~~~~~~l~~~L~~~G~~v~-~~-P~i---~~~~~~~~~~l~~~l~~~~~d~i-vFTS~~av~~~~ 117 (300)
.-+..+++++. .. ........+.|.+.|++++ .+ |-. ++...+-+..+.+.......|.+ ||+.+..+....
T Consensus 9 ~l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~~~~~~~~ 88 (305)
T 2fp4_A 9 LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAI 88 (305)
T ss_dssp GCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHH
T ss_pred HHhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCHHHHHHHH
Confidence 34556777766 54 2235677788889998843 12 321 22111111223333221145655 566677777777
Q ss_pred HHHHHcCCCCceEEEEccchHH--HHHHHhhccCC-CccccccCCCC---c-HHHHHHhcccCCCCCCEEEEE-cCCCCh
Q 022234 118 EAWKEAGTPNVRIGVVGAGTAS--IFEEVIQSSKC-SLDVAFSPSKA---T-GKILASELPKNGKKKCTVLYP-ASAKAS 189 (300)
Q Consensus 118 ~~l~~~~~~~~~i~aVG~~Ta~--~L~~~~~~~~~-G~~~~~~p~~~---~-~e~L~~~L~~~~~~~~~vL~~-rg~~~~ 189 (300)
+.+.+.+...+-+++-|-...+ .+.+.. ... |+.. +.|... + ...+...++......++|-++ ++..-.
T Consensus 89 ~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a--~~~~gi~l-iGPnc~Gii~p~~~~~~~~~~~~~~~G~va~vSqSG~l~ 165 (305)
T 2fp4_A 89 NEAIDAEVPLVVCITEGIPQQDMVRVKHRL--LRQGKTRL-IGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLT 165 (305)
T ss_dssp HHHHHTTCSEEEECCCCCCHHHHHHHHHHH--TTCSSCEE-ECSSSCEEEETTTEEEESSCGGGCCEEEEEEEESCSHHH
T ss_pred HHHHHCCCCEEEEECCCCChHHHHHHHHHH--HhcCCcEE-EeCCCCeEecccccceeeccccCCCCCCEEEEecchHHH
Confidence 7676666533344444543332 344432 223 5543 334321 0 011111122221223466555 444445
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeeeC-CCCcHHHHHHc---CCCCEEEEECh------HHHHHHHHHhcccCCCCceEEE-
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASP------SAVRSWVNLISDTEQWSNSVAC- 258 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~l---~~~d~IvftS~------s~v~~~~~~~~~~~~~~~~vv~- 258 (300)
..+.+.+.++|+-+..+.-.-.... ..+..++++.+ .+-++|+++.- ...+.|++.... ...+.+|++
T Consensus 166 ~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~~f~~~~~~-~~~~KPVv~~ 244 (305)
T 2fp4_A 166 YEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNS-GPKSKPVVSF 244 (305)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHHHHHHHSC-STTCCCEEEE
T ss_pred HHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHHHHHHHHHH-hcCCCCEEEE
Confidence 6677888899988887777776553 34444555544 35567777755 347788887553 112334433
Q ss_pred -eCHHH-----------------------HHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 259 -IGETT-----------------------ASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 259 -IG~~T-----------------------a~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
.|.+. ..++++.|+.+ . .++++|.+++...++.
T Consensus 245 k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~---v--~~~~el~~~~~~~~~~ 301 (305)
T 2fp4_A 245 IAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVV---S--MSPAQLGTTIYKEFEK 301 (305)
T ss_dssp EECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCEE---C--SSTTCHHHHHHHHHHH
T ss_pred EecCCccccccccchhhhhccCCccHHHHHHHHHHCCCeE---e--CCHHHHHHHHHHHHHh
Confidence 34433 34778888743 2 2555666666665543
No 117
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=79.25 E-value=26 Score=35.05 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=72.5
Q ss_pred CCCeEEEeCCCCc-----hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh-----HHHHHHHH
Q 022234 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP-----EAGSVFLE 118 (300)
Q Consensus 49 ~g~~VlitR~~~~-----~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~-----~av~~~~~ 118 (300)
...+|++.....+ ..-.+..|+..|++|+..+... ..+++.+.....+.|.|+.+|- ..+..+.+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v-----~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~ 677 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQ-----TPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIK 677 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTC-----CHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCC-----CHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHH
Confidence 3456777766542 3456678999999999876632 1234433444568899998873 35566777
Q ss_pred HHHHcCCCCceEEEEc--cch-HHHHHHHhhccCCCccccccCCCCcHHHHHHhc
Q 022234 119 AWKEAGTPNVRIGVVG--AGT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 170 (300)
Q Consensus 119 ~l~~~~~~~~~i~aVG--~~T-a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 170 (300)
.+++.+..++++++=| +.. .+.+++. |....+.|.. +....++.+
T Consensus 678 ~Lr~~G~~dv~VivGG~~P~~d~~~l~~~------GaD~~f~pgt-d~~e~~~~i 725 (762)
T 2xij_A 678 ELNSLGRPDILVMCGGVIPPQDYEFLFEV------GVSNVFGPGT-RIPKAAVQV 725 (762)
T ss_dssp HHHHTTCTTSEEEEEESCCGGGHHHHHHH------TCCEEECTTC-CHHHHHHHH
T ss_pred HHHhcCCCCCEEEEeCCCCcccHHHHHhC------CCCEEeCCCC-CHHHHHHHH
Confidence 7888887778877766 343 6778998 9987666544 544444444
No 118
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=79.01 E-value=8.6 Score=30.64 Aligned_cols=108 Identities=7% Similarity=-0.027 Sum_probs=60.8
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHH
Q 022234 163 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSW 242 (300)
Q Consensus 163 ~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~ 242 (300)
...+++.|.+. |-++.++.+...+......|+..|+.- -+|.++..+..-.+.|
T Consensus 73 ~~e~L~~L~~~---G~~v~ivT~~~~~~~~~~~l~~~gl~~-----------------------~f~~~~~~~~~k~~~~ 126 (187)
T 2wm8_A 73 VPEVLKRLQSL---GVPGAAASRTSEIEGANQLLELFDLFR-----------------------YFVHREIYPGSKITHF 126 (187)
T ss_dssp HHHHHHHHHHH---TCCEEEEECCSCHHHHHHHHHHTTCTT-----------------------TEEEEEESSSCHHHHH
T ss_pred HHHHHHHHHHC---CceEEEEeCCCChHHHHHHHHHcCcHh-----------------------hcceeEEEeCchHHHH
Confidence 44555555543 356666665543455666666666431 1122211111122334
Q ss_pred HHHhcccCCCCceEEEeCHHHH--HHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 243 VNLISDTEQWSNSVACIGETTA--SAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 243 ~~~~~~~~~~~~~vv~IG~~Ta--~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
...++..+...-.++.||.... .++++.|+..+.+....+.+.+.+.+.++...
T Consensus 127 ~~~~~~~~~~~~~~~~igD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~l~~~~~~ 182 (187)
T 2wm8_A 127 ERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLETFAKA 182 (187)
T ss_dssp HHHHHHHCCCGGGEEEEESCHHHHHHHHTTTCEEEECSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCChHHEEEEeCCccChHHHHHcCCEEEEECCCCChHHHHHHHHHHHHh
Confidence 3333333222235677876554 46888999988888888899999988877654
No 119
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=78.87 E-value=17 Score=26.68 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=64.3
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcC
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAG 124 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~ 124 (300)
....+++||+.-... ....+...|++.|+++..+ .+..+....+....+|.|+....++.+ +.+.+++.
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~~~~dlvi~~~~~g~~-~~~~l~~~- 83 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLMDIRNYDLVMVSDKNALS-FVSRIKEK- 83 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHHHHSCCSEEEECSTTHHH-HHHHHHHH-
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEe--------CCHHHHHHHHHcCCCCEEEEcCccHHH-HHHHHHhc-
Confidence 556788999887654 3567888898888754321 222333334445679999943445554 44555554
Q ss_pred CCCceEEEEccc-hHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccC
Q 022234 125 TPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN 173 (300)
Q Consensus 125 ~~~~~i~aVG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~ 173 (300)
..+.+++++... ......+.+.. |.. +++.... +.+.|...+...
T Consensus 84 ~~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~~l~~~i~~~ 130 (137)
T 2pln_A 84 HSSIVVLVSSDNPTSEEEVHAFEQ---GAD-DYIAKPYRSIKALVARIEAR 130 (137)
T ss_dssp STTSEEEEEESSCCHHHHHHHHHT---TCS-EEEESSCSCHHHHHHHHHHH
T ss_pred CCCccEEEEeCCCCHHHHHHHHHc---CCc-eeeeCCCCCHHHHHHHHHHH
Confidence 216777766443 33332222211 543 3455556 777887776543
No 120
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=78.82 E-value=25 Score=30.60 Aligned_cols=146 Identities=10% Similarity=0.003 Sum_probs=83.0
Q ss_pred cCCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCC-ccccccCCC-CcHHHHHHhcccCCC
Q 022234 99 DTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSK-ATGKILASELPKNGK 175 (300)
Q Consensus 99 ~~~~d~ivFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G-~~~~~~p~~-~~~e~L~~~L~~~~~ 175 (300)
....|.||.. +..........+.+. +++++..+... ..+... + .-..+.|+. ..+..+++.|.+.
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-- 137 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKE---GMPQLSPTAAH-PDYIKI------SPWQFRAITTPAFEGPNNAAWMIGD-- 137 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHH---TCCEEESSCCC-GGGTTS------CTTEEESSCCGGGHHHHHHHHHHHT--
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHC---CCcEEecCCCC-cccccC------CCeEEEecCChHHHHHHHHHHHHHc--
Confidence 5678998875 444445555555543 46777765433 222222 2 111123333 3355667776665
Q ss_pred CCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-HHHHHHHHhc
Q 022234 176 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-AVRSWVNLIS 247 (300)
Q Consensus 176 ~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s-~v~~~~~~~~ 247 (300)
..++|.++..+. ....+.+.|++.|+.+.....|... .......++.+ .++|+|++.+.. .+..++..+.
T Consensus 138 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~ 215 (358)
T 3hut_A 138 GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPG--NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALR 215 (358)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHH
Confidence 347888885433 2346778899999887665555432 22222233333 378888877765 7777888777
Q ss_pred ccCCCCceEEEe
Q 022234 248 DTEQWSNSVACI 259 (300)
Q Consensus 248 ~~~~~~~~vv~I 259 (300)
+.+. +.+++..
T Consensus 216 ~~g~-~~p~~~~ 226 (358)
T 3hut_A 216 ARGS-ALPVYGS 226 (358)
T ss_dssp HTTC-CCCEEEC
T ss_pred HcCC-CCcEEec
Confidence 6543 5566654
No 121
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=78.55 E-value=8 Score=30.84 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=68.9
Q ss_pred CCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hc-CCccEEEEeChHHHHHHHHHHHHcCCCCceEEE
Q 022234 57 RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---ND-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGV 132 (300)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~-~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~a 132 (300)
++.++..++.+.|+++|+.+..+.--. ........+ .+ ..+|.++..+..-...+...+.+.+.+.-.++.
T Consensus 68 ~~~~g~~e~L~~L~~~G~~v~ivT~~~-----~~~~~~~~l~~~gl~~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 142 (187)
T 2wm8_A 68 RLYPEVPEVLKRLQSLGVPGAAASRTS-----EIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIF 142 (187)
T ss_dssp CCCTTHHHHHHHHHHHTCCEEEEECCS-----CHHHHHHHHHHTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEE
T ss_pred CcchhHHHHHHHHHHCCceEEEEeCCC-----ChHHHHHHHHHcCcHhhcceeEEEeCchHHHHHHHHHHcCCChHHEEE
Confidence 344567888999999998776543211 012222222 23 347887666677778888888877776667899
Q ss_pred EccchHH--HHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 133 VGAGTAS--IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 133 VG~~Ta~--~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
||..... ++++. |+.+..+...++.+.+.+.|..
T Consensus 143 igD~~~Di~~a~~a------G~~~i~v~~g~~~~~~~~~l~~ 178 (187)
T 2wm8_A 143 FDDERRNIVDVSKL------GVTCIHIQNGMNLQTLSQGLET 178 (187)
T ss_dssp EESCHHHHHHHHTT------TCEEEECSSSCCHHHHHHHHHH
T ss_pred EeCCccChHHHHHc------CCEEEEECCCCChHHHHHHHHH
Confidence 9988654 45556 9988777776777666665543
No 122
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=78.32 E-value=2.1 Score=37.01 Aligned_cols=143 Identities=8% Similarity=0.063 Sum_probs=83.6
Q ss_pred EEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee
Q 022234 131 GVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 131 ~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
.++|=+|.+++.+++ + . ..+. ...++.+.+. ...+++|.+++... -+.+.|++. + ++.+++
T Consensus 82 ralgiAaiNAv~~~~-----~-~--~~~~--~~~d~~~~~~--~~~~~kV~vIG~~p---~l~~~l~~~-~---~v~V~d 142 (249)
T 3npg_A 82 RTLGVAAINAVSQYY-----I-D--LREA--KWIDVTELIQ--QDEIKRIAIIGNMP---PVVRTLKEK-Y---EVYVFE 142 (249)
T ss_dssp HHHHHHHHHHHHHHH-----C-C--CTTC--BCCCHHHHHH--TSCCSEEEEESCCH---HHHHHHTTT-S---EEEEEC
T ss_pred HHHHHHHHHHhhhhc-----c-c--cCCc--cccCHHHHHh--hcCCCEEEEECCCH---HHHHHHhcc-C---CEEEEE
Confidence 467788888887762 2 1 1111 1223444454 22457999988755 366677765 3 567777
Q ss_pred eeeCC---CC-cHHHH-HHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHHH---HHHHcCCCeEEecCCCC
Q 022234 211 TEPVH---HV-DQTVL-KQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTAS---AAKRLGLKNVYYPTHPG 282 (300)
Q Consensus 211 ~~~~~---~~-~~~~~-~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~---~l~~~G~~~~~v~~~p~ 282 (300)
..+.. .. ++... ..+...|+++.|..+-+..=+..+-+.-.....++.+||+|.- .+.++|++.+-=..-.+
T Consensus 143 ~~p~~~~~~~~~~~~e~~~l~~~D~v~iTGsTlvN~Ti~~lL~~~~~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d 222 (249)
T 3npg_A 143 RNMKLWDRDTYSDTLEYHILPEVDGIIASASCIVNGTLDMILDRAKKAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTN 222 (249)
T ss_dssp CSGGGCCSSEECGGGHHHHGGGCSEEEEETTHHHHTCHHHHHHHCSSCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESC
T ss_pred CCCcccCCCCCChhHHHhhhccCCEEEEEeeeeccCCHHHHHHhCcccCeEEEEecCchhhHHHHhhCCccEEEEEEecC
Confidence 76642 11 11112 2357899999999987765444333221123467899999873 33456777542222247
Q ss_pred HHHHHHHHHH
Q 022234 283 LEGWVDSILE 292 (300)
Q Consensus 283 ~~~l~~ai~~ 292 (300)
.+.+++.|.+
T Consensus 223 ~~~~l~~i~~ 232 (249)
T 3npg_A 223 IEKALVKLKL 232 (249)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888888864
No 123
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=78.20 E-value=16 Score=36.67 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=71.6
Q ss_pred CEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-----HHHHHHHH
Q 022234 178 CTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVNL 245 (300)
Q Consensus 178 ~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s-----~v~~~~~~ 245 (300)
.+|++.+-.. +...+...|+..|++|..+ ....+++++.+.. .+.|+|.+.|-. .+..+++.
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~l------G~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~ 678 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIG------PLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKE 678 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEEC------CTTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHH
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeC------CCCCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHH
Confidence 4676654332 3456777899999988542 2233344554443 588999888733 44555566
Q ss_pred hcccCCCCceEEEeC--HHH-HHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 246 ISDTEQWSNSVACIG--ETT-ASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 246 ~~~~~~~~~~vv~IG--~~T-a~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
+++.+..++++++=| |.. .+.+++.|+.-++ ....+...+++.+.+.+.
T Consensus 679 Lr~~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f-~pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 679 LNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVF-GPGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp HHHTTCTTSEEEEEESCCGGGHHHHHHHTCCEEE-CTTCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEEeCCCCcccHHHHHhCCCCEEe-CCCCCHHHHHHHHHHHHH
Confidence 666554466776655 443 6778999998755 444588888888887764
No 124
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=77.67 E-value=18 Score=26.40 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CC-CCEEEEEC----hHHHHHHHHHhcc
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LS-IPVVAVAS----PSAVRSWVNLISD 248 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~-~d~IvftS----~s~v~~~~~~~~~ 248 (300)
..+||++..+.. +..|.+.|+..|+.|.. + . ...+....+ .. +|.|++-- .++.+ ++..+..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~--~------~-~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~-~~~~l~~ 76 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVG--A------D-GAEEARLYLHYQKRIGLMITDLRMQPESGLD-LIRTIRA 76 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEE--E------S-SHHHHHHHHHHCTTEEEEEECSCCSSSCHHH-HHHHHHT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEE--e------C-CHHHHHHHHHhCCCCcEEEEeccCCCCCHHH-HHHHHHh
Confidence 368999987764 67788899988876532 1 1 111222222 23 77777632 22333 4444444
Q ss_pred cCCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 249 TEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 249 ~~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
....+.+++.++ ......+.+.|..- ++....+.+.|.++|.+....+.
T Consensus 77 ~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 77 SERAALSIIVVSGDTDVEEAVDVMHLGVVD-FLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp STTTTCEEEEEESSCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHC---
T ss_pred cCCCCCCEEEEeCCCChHHHHHHHhCCcce-EEeCCCCHHHHHHHHHHHhcCch
Confidence 322456666654 34556667789864 66777799999999998876543
No 125
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=77.29 E-value=18 Score=26.89 Aligned_cols=113 Identities=11% Similarity=0.105 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCC-hhHHHHHHHhCC-CeeEEEEeeeeeeCCCCcHHH--HHHc-CCCCEEEEEC----hHHHHHHHHHh
Q 022234 176 KKCTVLYPASAKA-SNEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQTV--LKQA-LSIPVVAVAS----PSAVRSWVNLI 246 (300)
Q Consensus 176 ~~~~vL~~rg~~~-~~~L~~~L~~~G-~~v~~~~vY~~~~~~~~~~~~--~~~l-~~~d~IvftS----~s~v~~~~~~~ 246 (300)
++.+||++..+.. +..|.+.|+..| +.|.. +. ...+.+ +..- ..+|+|++-- ..+.+ ++..+
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~--~~------~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~-~~~~l 89 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTR--TV------GRAAQIVQRTDGLDAFDILMIDGAALDTAELA-AIEKL 89 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEE--EC------CCHHHHTTCHHHHTTCSEEEEECTTCCHHHHH-HHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEE--eC------CHHHHHHHHHhcCCCCCEEEEeCCCCCccHHH-HHHHH
Confidence 4579999987764 677888898887 65532 11 111111 1111 4688887742 23333 44444
Q ss_pred cccCCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccCC
Q 022234 247 SDTEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 299 (300)
Q Consensus 247 ~~~~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~~ 299 (300)
.... .+.+++.++ ......+.+.|.. .++....+.+.|.++|...+....+
T Consensus 90 ~~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~-~~l~Kp~~~~~L~~~i~~~~~~~~~ 144 (146)
T 4dad_A 90 SRLH-PGLTCLLVTTDASSQTLLDAMRAGVR-DVLRWPLEPRALDDALKRAAAQCAQ 144 (146)
T ss_dssp HHHC-TTCEEEEEESCCCHHHHHHHHTTTEE-EEEESSCCHHHHHHHHHHHHHTCCC
T ss_pred HHhC-CCCcEEEEeCCCCHHHHHHHHHhCCc-eeEcCCCCHHHHHHHHHHHHhhhcc
Confidence 4332 356666654 3445556677875 4667777999999999998876554
No 126
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=77.28 E-value=25 Score=30.80 Aligned_cols=149 Identities=15% Similarity=0.055 Sum_probs=84.6
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCC
Q 022234 100 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 177 (300)
Q Consensus 100 ~~~d~ivFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~ 177 (300)
...+.||.. +..........+.+. +++++..+..+. .+.... .. ..-....|.. ..+..+++.|.+. ..
T Consensus 81 ~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~~-~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~l~~~--g~ 151 (375)
T 4evq_A 81 EKADVLIGTVHSGVAMAMVKIARED---GIPTIVPNAGAD-IITRAM--CA-PNVFRTSFANGQIGRATGDAMIKA--GL 151 (375)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---CCCEEESSCCCG-GGGTTT--CC-TTEEESSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCceEEEcCCccHHHHHHHHHHHHc---CceEEecCCCCh-hhcccC--CC-CCEEEeeCChHhHHHHHHHHHHHc--CC
Confidence 478999875 344445555555543 467777664432 222210 00 1111123332 2245566666654 35
Q ss_pred CEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEE-EChHHHHHHHHHhccc
Q 022234 178 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDT 249 (300)
Q Consensus 178 ~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivf-tS~s~v~~~~~~~~~~ 249 (300)
++|.++..+.. .+.+.+.|++.|+.+.....|... ..+....++.+ .++|+|++ .+...+..+++.+.+.
T Consensus 152 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~ 229 (375)
T 4evq_A 152 KKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP--DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAA 229 (375)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHT
T ss_pred cEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHc
Confidence 78888865442 456778899999887655555432 12222333333 37898888 7888888888888765
Q ss_pred CCCCceEEEeC
Q 022234 250 EQWSNSVACIG 260 (300)
Q Consensus 250 ~~~~~~vv~IG 260 (300)
+ .+.+++..|
T Consensus 230 g-~~vp~~~~~ 239 (375)
T 4evq_A 230 N-LGIPLWGPG 239 (375)
T ss_dssp T-CCCCEEEEG
T ss_pred C-CCceEEecC
Confidence 5 346777665
No 127
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=76.82 E-value=13 Score=30.97 Aligned_cols=91 Identities=9% Similarity=0.072 Sum_probs=58.4
Q ss_pred CCCeEEEeCCCCc-----hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEE--eChHH-----HHHH
Q 022234 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIII--TSPEA-----GSVF 116 (300)
Q Consensus 49 ~g~~VlitR~~~~-----~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivF--TS~~a-----v~~~ 116 (300)
.+.+|++.-+.++ ..-....|+.+|++|+.+..-. ..+++.+.....+.|.|.+ ++-.. ++.+
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v-----p~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~ 165 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDV-----LNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDL 165 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSC-----CHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCC-----CHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHH
Confidence 3567777765543 3467778999999999876521 1244444444567888888 55333 4556
Q ss_pred HHHHHHcCC-CCceEEEEccchHHHHHHH
Q 022234 117 LEAWKEAGT-PNVRIGVVGAGTASIFEEV 144 (300)
Q Consensus 117 ~~~l~~~~~-~~~~i~aVG~~Ta~~L~~~ 144 (300)
.+.+++.+. +++++++-|....+.+.+.
T Consensus 166 i~~l~~~~~~~~v~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 166 MDRLNEEKLRDSVKCMFGGAPVSDKWIEE 194 (215)
T ss_dssp HHHHHHTTCGGGSEEEEESSSCCHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHH
Confidence 667777765 4789999998655544444
No 128
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=75.45 E-value=20 Score=25.86 Aligned_cols=113 Identities=8% Similarity=0.032 Sum_probs=60.2
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC----hHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS----PEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS----~~av~~~~~~l 120 (300)
.++.+++||+.-... ....+...|++.|+.+... .+..+..+.+....+|.|+.-- .++.+.+ +.+
T Consensus 3 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~-~~l 73 (130)
T 3eod_A 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLA--------ADGVDALELLGGFTPDLMICDIAMPRMNGLKLL-EHI 73 (130)
T ss_dssp CTTTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHHTTCCCSEEEECCC-----CHHHH-HHH
T ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEe--------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHH-HHH
Confidence 467789999997765 3567888899999876431 1333333444556789888753 2344433 445
Q ss_pred HHcCCCCceEEEE-ccchHHHHHHHhhccCCCccccccCCCC-cHHHHHHhccc
Q 022234 121 KEAGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPK 172 (300)
Q Consensus 121 ~~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~ 172 (300)
++.. .+.+++++ +........+.+.. |.. ++..... +.+.|.+.+..
T Consensus 74 ~~~~-~~~~ii~~t~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~~l~~~i~~ 122 (130)
T 3eod_A 74 RNRG-DQTPVLVISATENMADIAKALRL---GVE-DVLLKPVKDLNRLREMVFA 122 (130)
T ss_dssp HHTT-CCCCEEEEECCCCHHHHHHHHHH---CCS-EEEESCC---CHHHHHHHH
T ss_pred HhcC-CCCCEEEEEcCCCHHHHHHHHHc---CCC-EEEeCCCCcHHHHHHHHHH
Confidence 5443 34555554 44443333322221 544 2344444 45666655543
No 129
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=75.39 E-value=19 Score=33.27 Aligned_cols=73 Identities=12% Similarity=0.029 Sum_probs=43.0
Q ss_pred HHHHHc--CCCCEEEEEChHHHHHHH--HHhcccCCCCceEE--EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHH
Q 022234 220 TVLKQA--LSIPVVAVASPSAVRSWV--NLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 293 (300)
Q Consensus 220 ~~~~~l--~~~d~IvftS~s~v~~~~--~~~~~~~~~~~~vv--~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~ 293 (300)
+.++.. .+.|+|+.+.+....+.. ..++... .+++++ +-.+.-+..+++.|...++.+..-.-..|...+...
T Consensus 59 ~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~-p~~~Iiara~~~~~~~~L~~~Gad~Vi~~~~~~a~~la~~~L~~ 137 (413)
T 3l9w_A 59 DLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHF-PHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALES 137 (413)
T ss_dssp HHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHTTCSSCEETTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHH
Confidence 344443 578888888776544433 3333322 344555 458999999999999976544433333444444433
No 130
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=75.38 E-value=41 Score=29.28 Aligned_cols=179 Identities=14% Similarity=0.090 Sum_probs=92.2
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeee------EeeeCCCchhHHHhhhcCCccEE-EEeChHHHHHHHHHHH
Q 022234 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLI------QHAQGPDTDRLSSVLNDTIFDWI-IITSPEAGSVFLEAWK 121 (300)
Q Consensus 50 g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i------~~~~~~~~~~l~~~l~~~~~d~i-vFTS~~av~~~~~~l~ 121 (300)
.++|+|..... ......+.+.+.|++++ .|+- ++...+-+..+.+.......|.+ +||.+..+....+.+.
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v-~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~~~ea~ 85 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTKIV-AGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAA 85 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCeEE-EEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHH
Confidence 46799987644 35567778888898743 2321 11111111223333322256755 5788888888777777
Q ss_pred HcCCCCceEEEEcc------chHHHHHHHhhccCCCccccccCCCC---cH-HHHHHhcccCCCCCCEEEEE-cCCCChh
Q 022234 122 EAGTPNVRIGVVGA------GTASIFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYP-ASAKASN 190 (300)
Q Consensus 122 ~~~~~~~~i~aVG~------~Ta~~L~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~L~~~~~~~~~vL~~-rg~~~~~ 190 (300)
+.+.+.+-+++-|- .-.+.+++. |+.. +.|... +. ..+...++......++|-++ ++..-..
T Consensus 86 ~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~------gi~v-igPNc~Gii~~~~~~~~~~~~~~~~~G~va~vsqSG~l~~ 158 (288)
T 1oi7_A 86 HAGIPLIVLITEGIPTLDMVRAVEEIKAL------GSRL-IGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTY 158 (288)
T ss_dssp HTTCSEEEECCSCCCHHHHHHHHHHHHHH------TCEE-EESSSCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHH
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EeCCCCeEEcCCCceeEEcccCCCCCCCEEEEECCHHHHH
Confidence 76532222223231 233455556 7753 223311 10 11111122221223466555 4433355
Q ss_pred HHHHHHHhCCCeeEEEEeeeeeeC-CCCcHHHHHHc---CCCCEEEEECh
Q 022234 191 EIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASP 236 (300)
Q Consensus 191 ~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~l---~~~d~IvftS~ 236 (300)
.+.+.+.++|+-+..+.-.-.... ..+..++++.+ .+-++|+++.-
T Consensus 159 ~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E 208 (288)
T 1oi7_A 159 EAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGE 208 (288)
T ss_dssp HHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEEC
T ss_pred HHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 677788888988877777666553 23344555544 24567776643
No 131
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=75.22 E-value=26 Score=31.25 Aligned_cols=105 Identities=11% Similarity=0.015 Sum_probs=57.9
Q ss_pred CEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEE
Q 022234 178 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVA 257 (300)
Q Consensus 178 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv 257 (300)
-.|++.+|....+.+.+.+++.+.++... +..++..+. +...|.+|.-|. .-.+.+.+.. +++++
T Consensus 212 ~~vi~~~G~~~~~~~~~~~~~~~~~~~v~------~f~~dm~~~---l~~aDlvI~raG--~~Tv~E~~a~----G~P~I 276 (365)
T 3s2u_A 212 PAIRHQAGRQHAEITAERYRTVAVEADVA------PFISDMAAA---YAWADLVICRAG--ALTVSELTAA----GLPAF 276 (365)
T ss_dssp CEEEEECCTTTHHHHHHHHHHTTCCCEEE------SCCSCHHHH---HHHCSEEEECCC--HHHHHHHHHH----TCCEE
T ss_pred eEEEEecCccccccccceecccccccccc------cchhhhhhh---hccceEEEecCC--cchHHHHHHh----CCCeE
Confidence 35666666665556666666665544221 111222222 235677775443 3334443332 34555
Q ss_pred Ee-------CHH--HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 258 CI-------GET--TASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 258 ~I-------G~~--Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
.| +.. -|+.+.+.|.-..+..+..+.+.|.++|.+.+..+
T Consensus 277 lip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~ 325 (365)
T 3s2u_A 277 LVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHP 325 (365)
T ss_dssp ECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCT
T ss_pred EeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCH
Confidence 44 222 26778888986543334458899999999888765
No 132
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=75.12 E-value=13 Score=32.50 Aligned_cols=167 Identities=10% Similarity=0.069 Sum_probs=83.6
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
-+.+.++++|+++..+.. ....+.....+.+....+|.||+++..--..+.....+ ..+++++.++..... .
T Consensus 28 Gi~~~~~~~g~~~~~~~~---~~~~~~~~~l~~l~~~~~dgIi~~~~~~~~~~~~~a~~--~p~~p~v~id~~~~~---~ 99 (318)
T 2fqx_A 28 GISRFAQENNAKCKYVTA---STDAEYVPSLSAFADENMGLVVACGSFLVEAVIETSAR--FPKQKFLVIDAVVQD---R 99 (318)
T ss_dssp HHHHHHHHTTCEEEEEEC---CSGGGHHHHHHHHHHTTCSEEEEESTTTHHHHHHHHHH--CTTSCEEEESSCCCS---C
T ss_pred HHHHHHHHhCCeEEEEeC---CCHHHHHHHHHHHHHcCCCEEEECChhHHHHHHHHHHH--CCCCEEEEEcCccCC---C
Confidence 445567788987655432 11111111112222467999999986543444333332 236788888753210 1
Q ss_pred HhhccCCCccccccCCCCcHHHHH----HhcccCCCCC--CEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeee
Q 022234 144 VIQSSKCSLDVAFSPSKATGKILA----SELPKNGKKK--CTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 144 ~~~~~~~G~~~~~~p~~~~~e~L~----~~L~~~~~~~--~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
. .+.. +....+.+.-++ ..|.+ .| ++|.|+.|... ..-+.+.+++.|.++....+|..
T Consensus 100 ~------~~~~-v~~d~~~~~~lag~~a~~l~~---~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~ 169 (318)
T 2fqx_A 100 D------NVVS-AVFGQNEGSFLVGVAAALKAK---EAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVAN 169 (318)
T ss_dssp T------TEEE-EEECHHHHHHHHHHHHHHHHH---HTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECS
T ss_pred C------CEEE-EEechHHHHHHHHHHHHHHhc---cCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEcc
Confidence 1 2221 222322333332 34443 24 59999987542 22355677788877665555543
Q ss_pred eeCCCC-cHHHHHH-c-CCCCEEEEEChHHHHHHHHHhcc
Q 022234 212 EPVHHV-DQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISD 248 (300)
Q Consensus 212 ~~~~~~-~~~~~~~-l-~~~d~IvftS~s~v~~~~~~~~~ 248 (300)
...... ..+..+. + .++|+|+..+-..+-..++.+.+
T Consensus 170 ~~~~~~~g~~~a~~ll~~~~daI~~~~d~~a~Gv~~a~~e 209 (318)
T 2fqx_A 170 TFSDPQKGQALAAKLYDSGVNVIFQVAGGTGNGVIKEARD 209 (318)
T ss_dssp CSSCHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHCCCcEEEECCCCCchHHHHHHHh
Confidence 211111 1112222 2 46899988876655545544443
No 133
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=74.87 E-value=25 Score=26.54 Aligned_cols=110 Identities=12% Similarity=0.106 Sum_probs=62.7
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC----hHHHHHHHHHHHHc
Q 022234 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS----PEAGSVFLEAWKEA 123 (300)
Q Consensus 49 ~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS----~~av~~~~~~l~~~ 123 (300)
.+++||+.-... ....+.+.|++.|+.+... .+..+....+....+|.|++-- .++.+.+ +.+++.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~-~~lr~~ 76 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHV--------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALC-RWLKGQ 76 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHH-HHHHHS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHH-HHHHhC
Confidence 467899987764 4567888899888765432 2333333444556799888853 3455444 445554
Q ss_pred C-CCCceEEEEc-cchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 124 G-TPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 124 ~-~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
. ..+++++++. ........+.+.. |.. ++++...+.+.|...+.
T Consensus 77 ~~~~~~pii~~s~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~ 122 (154)
T 3gt7_A 77 PDLRTIPVILLTILSDPRDVVRSLEC---GAD-DFITKPCKDVVLASHVK 122 (154)
T ss_dssp TTTTTSCEEEEECCCSHHHHHHHHHH---CCS-EEEESSCCHHHHHHHHH
T ss_pred CCcCCCCEEEEECCCChHHHHHHHHC---CCC-EEEeCCCCHHHHHHHHH
Confidence 3 3466666654 3443333332221 543 35555667777776664
No 134
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=74.63 E-value=21 Score=30.95 Aligned_cols=171 Identities=8% Similarity=0.066 Sum_probs=91.9
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHH---HhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHH
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 140 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~---~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 140 (300)
.+.+.++++|+.++.+.. ..+.+... +.+....+|.|| .+...-. +.+ ...+++++++|.....
T Consensus 81 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~~---~~l---~~~~iPvV~~~~~~~~- 147 (330)
T 3ctp_A 81 VIEEYAKNKGYTLFLCNT-----DDDKEKEKTYLEVLQSHRVAGII-ASRSQCE---DEY---ANIDIPVVAFENHILD- 147 (330)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEE-EETCCCS---GGG---TTCCSCEEEESSCCCT-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEE-ECCCCCH---HHH---HhcCCCEEEEeccCCC-
Confidence 345566778988765432 12222111 222246799999 5432111 112 1246888998865321
Q ss_pred HHHHhhccCCCccccccCCCCc-HHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 022234 141 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 141 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.. . . +..+.+. +...++.|.+. ..++|.++.+.... .-+.+.|+++|..+. ..+|...
T Consensus 148 --~~------~--~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~ 213 (330)
T 3ctp_A 148 --NI------I--T-ISSDNYNGGRMAFDHLYEK--GCRKILHIKGPEVFEATELRYKGFLDGARAKDLEID-FIEFQHD 213 (330)
T ss_dssp --TS------C--E-EEECHHHHHHHHHHHHHHT--TCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSS
T ss_pred --CC------C--E-EEeCHHHHHHHHHHHHHHC--CCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCC
Confidence 11 1 1 1122222 34455566554 34689999886532 245677889998776 3333221
Q ss_pred eCC----CCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCC---CCceEEEeCHH
Q 022234 213 PVH----HVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 262 (300)
Q Consensus 213 ~~~----~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~---~~~~vv~IG~~ 262 (300)
... ....++++. .++|+|+..+-..+-.++..+.+.+. .++.++.++..
T Consensus 214 ~~~~~~~~~~~~ll~~-~~~~ai~~~~d~~A~g~~~al~~~G~~vP~disvvg~D~~ 269 (330)
T 3ctp_A 214 FQVKMLEEDINSMKDI-VNYDGIFVFNDIAAATVMRALKKRGVSIPQEVQIIGFDNS 269 (330)
T ss_dssp CCGGGGGCCCTTGGGG-GGSSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CCHHHHHHHHHHHhcC-CCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeEEEEECCh
Confidence 111 011122332 46899999988877777777776552 36677777554
No 135
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=74.04 E-value=4.8 Score=33.27 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCC------------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEC-------hH
Q 022234 177 KCTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PS 237 (300)
Q Consensus 177 ~~~vL~~rg~~~------------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS-------~s 237 (300)
..+||++-|-.. .+.+.+.+++.|.+|+.+.+|+ ..+..+..+.+...|.|||.+ |.
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~----~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa 87 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADS----DYDVKAEVQNFLWADVVIWQMPGWWMGAPW 87 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSS----CCCHHHHHHHHHHCSEEEEEEECBTTBCCH
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCc----cccHHHHHHHHHhCCEEEEECCccccCCCH
Confidence 457777755433 1245666777799999999886 233444555667889999988 57
Q ss_pred HHHHHHHHh
Q 022234 238 AVRSWVNLI 246 (300)
Q Consensus 238 ~v~~~~~~~ 246 (300)
.++.|++.+
T Consensus 88 ~LK~~iDrv 96 (204)
T 2amj_A 88 TVKKYIDDV 96 (204)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 889999853
No 136
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=73.86 E-value=33 Score=31.94 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=29.8
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEE
Q 022234 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~ 78 (300)
+++||.|.||...-.-. +...|.+.|.+.|++|..
T Consensus 37 ~~~pl~g~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~ 72 (436)
T 3h9u_A 37 PSKPLKGAKIAGCLHMTMQTAVLIETLVELGAEVRW 72 (436)
T ss_dssp TTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCCEEEEEeccHHHHHHHHHHHHHcCCEEEE
Confidence 56999999999887754 678899999999999865
No 137
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=73.72 E-value=30 Score=29.90 Aligned_cols=196 Identities=11% Similarity=0.040 Sum_probs=96.0
Q ss_pred CeEEEeCCCCc------hHHHHHHHHhCCCCE---EEeeeeEeeeC-CCchhHHHhh---hcCCccEEEEeChHHHHHHH
Q 022234 51 PKVVVTRERGK------NGKLIKALAKHRIDC---LELPLIQHAQG-PDTDRLSSVL---NDTIFDWIIITSPEAGSVFL 117 (300)
Q Consensus 51 ~~VlitR~~~~------~~~l~~~L~~~G~~v---~~~P~i~~~~~-~~~~~l~~~l---~~~~~d~ivFTS~~av~~~~ 117 (300)
.+|.|+.-.+. .+-+.+.|++.|+.- +.+ ..... .|.....+.. ...++|.||-.+..+.+...
T Consensus 9 ~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~---~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~t~aa~a~~ 85 (302)
T 3lkv_A 9 AKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEF---DYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQALV 85 (302)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEE---EEEECTTCHHHHHHHHHHHHTTCCSEEEEESHHHHHHHH
T ss_pred ceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEE---EEEeCCCCHHHHHHHHHHHHhcCCcEEEEcCCHHHHHHH
Confidence 45777753321 235778899998642 222 12222 2444333322 34689988877777766655
Q ss_pred HHHHHcCCCCceEEEEccc--h-HHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC------
Q 022234 118 EAWKEAGTPNVRIGVVGAG--T-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------ 188 (300)
Q Consensus 118 ~~l~~~~~~~~~i~aVG~~--T-a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------ 188 (300)
.. . .+++++..|-. . +...... ...|-++.-+-.....+.-++.+.+.....+++.++.....
T Consensus 86 ~~----~-~~iPVVf~~v~dp~~~~l~~~~---~~~g~nvtGv~~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~ 157 (302)
T 3lkv_A 86 SA----T-KTIPIVFTAVTDPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSL 157 (302)
T ss_dssp HH----C-SSSCEEEEEESCTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHH
T ss_pred hh----c-CCCCeEEEecCCcchhhhcccc---cCCCCcEEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHHHH
Confidence 42 1 34565554421 1 1111111 11132222222222344445555555445578877754332
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHH-cCCCCEEEEEChHHHHHHHHHhcccC-CCCceEEEeCH
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTE-QWSNSVACIGE 261 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-l~~~d~IvftS~s~v~~~~~~~~~~~-~~~~~vv~IG~ 261 (300)
.+.+.+.+++.|+++.+..+... ....+..+. ..+.|+++...-..+..-.+.+.... ..++++++...
T Consensus 158 ~~~~~~~~~~~g~~~v~~~~~~~----~~~~~~~~~l~~~~d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~~~ 228 (302)
T 3lkv_A 158 MELLKLSAAKHGIKLVEATALKS----ADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKTPVFGAAT 228 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSG----GGHHHHHHHHHTTCSEEEECSCHHHHHTHHHHHHHHHHTTCCEEESSH
T ss_pred HHHHHHHHHHcCCEEEEEecCCh----HHHHHHHHhccCCeeEEEEeCCcchhhHHHHHHHHHhhcCCceeeccc
Confidence 33566777888987755443322 112222322 36888887766554443333222111 13667777655
No 138
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=73.70 E-value=25 Score=25.99 Aligned_cols=112 Identities=8% Similarity=0.033 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHHhcccC
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDTE 250 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~---s~v~~~~~~~~~~~ 250 (300)
..+||++-.+.. +..|.+.|+..|+.+....+ . ...+.++.+ ..+|+|++--. ...-.++..+....
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~-~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFV-D------NGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPG 77 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEE-S------SHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEE-C------CHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 358888877654 67788899998866321111 1 122333333 36887777421 12233445555421
Q ss_pred -CCCceEEEeC----HHHHHHHHHcCCCeEEecCCC-CHHHHHHHHHHHHHc
Q 022234 251 -QWSNSVACIG----ETTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALRE 296 (300)
Q Consensus 251 -~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p-~~~~l~~ai~~~~~~ 296 (300)
..++++++++ +.....+.+.|..- ++.... +.+.|.++|...++.
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~~~~ga~~-~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 78 ANQHTPIVILTDNVSDDRAKQCMAAGASS-VVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp TTTTCCEEEEETTCCHHHHHHHHHTTCSE-EEECCTTSHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHcCCCE-EEECCCCcHHHHHHHHHHHHHH
Confidence 2466777664 45556677789875 566766 899999998877754
No 139
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=73.35 E-value=10 Score=32.61 Aligned_cols=103 Identities=10% Similarity=0.028 Sum_probs=56.0
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhc--CCc
Q 022234 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLND--TIF 102 (300)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~--~~~ 102 (300)
+++++++.+|.... .....++.||++|||..... ...+++.|.++|++|+.+-. .....+++.+.+.. ...
T Consensus 11 ~~~~~~~~~~~~~~--~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~ 84 (275)
T 4imr_A 11 VDLGTENLYFQSMR--LETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGV----KPGSTAAVQQRIIASGGTA 84 (275)
T ss_dssp -------CCSCTTS--HHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES----STTTTHHHHHHHHHTTCCE
T ss_pred cCcccccccccccc--ccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHHHHhcCCeE
Confidence 55666666666532 11234688999999988653 46899999999998765422 11122233333311 122
Q ss_pred cEEE--EeChHHHHHHHHHHHHcCCCCceEEEEc
Q 022234 103 DWII--ITSPEAGSVFLEAWKEAGTPNVRIGVVG 134 (300)
Q Consensus 103 d~iv--FTS~~av~~~~~~l~~~~~~~~~i~aVG 134 (300)
..+. +++..+++.+++.+.+.+.-+.-|.+.|
T Consensus 85 ~~~~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnAg 118 (275)
T 4imr_A 85 QELAGDLSEAGAGTDLIERAEAIAPVDILVINAS 118 (275)
T ss_dssp EEEECCTTSTTHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EEEEecCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 2221 3678888888887766543344444444
No 140
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=73.32 E-value=23 Score=32.59 Aligned_cols=165 Identities=13% Similarity=0.019 Sum_probs=92.3
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCC-CEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHHcCCCC
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKEAGTPN 127 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~-~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~~~~~ 127 (300)
.++|+++.+-. +...+.|++.|+ ++...+- . .+.+++.+ ...++|.+++.|..-+ +.+++.+ ++
T Consensus 4 ~~kil~~~~~~--~~~~~~l~~~~~~~v~~~~~----~-~~~~~l~~--~~~~~d~l~~~~~~~~~~~~l~~~-----~~ 69 (404)
T 1sc6_A 4 KIKFLLVEGVH--QKALESLRAAGYTNIEFHKG----A-LDDEQLKE--SIRDAHFIGLRSRTHLTEDVINAA-----EK 69 (404)
T ss_dssp SCCEEECSCCC--HHHHHHHHHTTCCCEEECSS----C-CCHHHHHH--HTTSCSEEEECSSCCBCHHHHHHC-----SS
T ss_pred ceEEEEeCCCC--HHHHHHHHhCCCcEEEEcCC----C-CCHHHHHH--HhcCCeEEEEcCCCCCCHHHHhhC-----CC
Confidence 46899987643 445678888887 6655431 1 12333333 3578999988775433 2233322 23
Q ss_pred ceEE-EEccch----HHHHHHHhhccCCCccccccCCCCcHHHHHHh----c---c-------------c--------CC
Q 022234 128 VRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE----L---P-------------K--------NG 174 (300)
Q Consensus 128 ~~i~-aVG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~----L---~-------------~--------~~ 174 (300)
++++ +.|-.+ -+++.+. |+.+...|. .+++..++. + . . ..
T Consensus 70 Lk~I~~~~~G~d~iD~~~a~~~------GI~V~n~p~-~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~e 142 (404)
T 1sc6_A 70 LVAIGAFAIGTNQVDLDAAAKR------GIPVFNAPF-SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFE 142 (404)
T ss_dssp CCEEEECSSCCTTBCHHHHHHT------TCCEECCTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCC
T ss_pred CcEEEECCcccCccCHHHHHhC------CCEEEecCc-ccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccc
Confidence 4444 334333 3577888 998877765 333322221 0 0 0 12
Q ss_pred CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCC-----cHHHHHHcCCCCEEEEEChHH
Q 022234 175 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 238 (300)
Q Consensus 175 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----~~~~~~~l~~~d~IvftS~s~ 238 (300)
..|+++.+++-..-...+...|++.|.+|. .|.+...... ...+.+.+...|+|++.-|.+
T Consensus 143 l~gktlGiIGlG~IG~~vA~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t 208 (404)
T 1sc6_A 143 ARGKKLGIIGYGHIGTQLGILAESLGMYVY---FYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPEN 208 (404)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSS
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCCCEEE---EEcCCchhccCCceecCCHHHHHhcCCEEEEccCCC
Confidence 367889888766666678889999997764 4544221110 011222234678888876654
No 141
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=73.10 E-value=6.6 Score=34.47 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=50.4
Q ss_pred ccccccccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeee--------------eEeeeC--CCchhHHHhhhc
Q 022234 37 ASSDATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPL--------------IQHAQG--PDTDRLSSVLND 99 (300)
Q Consensus 37 ~~~~~~~~~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~--------------i~~~~~--~~~~~l~~~l~~ 99 (300)
+..|+++-...+.||+||||...+ -...+++.|.+.|++|+.+-- ++.... .+.+.+.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~ 87 (333)
T 2q1w_A 8 HHHSSGLVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGD 87 (333)
T ss_dssp -------------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred ccccCceeeecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhc
Confidence 344566667778899999998765 356888999999998876521 122222 233344444432
Q ss_pred CCccEEEEeCh----------------HHHHHHHHHHHHcCCCCceEEEEccc
Q 022234 100 TIFDWIIITSP----------------EAGSVFLEAWKEAGTPNVRIGVVGAG 136 (300)
Q Consensus 100 ~~~d~ivFTS~----------------~av~~~~~~l~~~~~~~~~i~aVG~~ 136 (300)
...|.||.+.. .+...+.+.+.+.+ ..+++.++..
T Consensus 88 ~~~D~vih~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~--~~~iV~~SS~ 138 (333)
T 2q1w_A 88 LQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNN--VGRFVYFQTA 138 (333)
T ss_dssp HCCSEEEECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHTT--CSEEEEEEEG
T ss_pred cCCcEEEECceecCCCccCChHHHHHHHHHHHHHHHHHHhC--CCEEEEECcH
Confidence 35899887643 22344555555432 2366666653
No 142
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=73.01 E-value=31 Score=26.93 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH---H--HHHHHHhcccCCCCceEEEeC-----
Q 022234 191 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA---V--RSWVNLISDTEQWSNSVACIG----- 260 (300)
Q Consensus 191 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~---v--~~~~~~~~~~~~~~~~vv~IG----- 260 (300)
.+.+.|.+.|++|. +|... .....++...+.+.|.|+|-||.- + +.|++.+....+.+.+++++|
T Consensus 20 ~ia~~l~~~g~~v~---~~~~~--~~~~~~~~~~~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fgs~g~~ 94 (161)
T 3hly_A 20 AIGRGLVKTGVAVE---MVDLR--AVDPQELIEAVSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDSYGGD 94 (161)
T ss_dssp HHHHHHHHTTCCEE---EEETT--TCCHHHHHHHHHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEECCCCSS
T ss_pred HHHHHHHhCCCeEE---EEECC--CCCHHHHHHHHHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEEcCCCC
Confidence 45666777776543 33321 122233333345678888888731 1 455555443223345555543
Q ss_pred ----HHHHHHHHHcCCCeE----EecCCCCHHHH
Q 022234 261 ----ETTASAAKRLGLKNV----YYPTHPGLEGW 286 (300)
Q Consensus 261 ----~~Ta~~l~~~G~~~~----~v~~~p~~~~l 286 (300)
....+.+++.|++++ .+-..|+.+++
T Consensus 95 g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl 128 (161)
T 3hly_A 95 DEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIY 128 (161)
T ss_dssp BCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHH
T ss_pred cHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHH
Confidence 345667777898742 23456777654
No 143
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=72.72 E-value=35 Score=30.17 Aligned_cols=149 Identities=8% Similarity=0.018 Sum_probs=84.0
Q ss_pred cCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCC
Q 022234 99 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 177 (300)
Q Consensus 99 ~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~ 177 (300)
....+.||-.+..........+.+. +++++..+. +....... .. ..-....|.. ..+..+++.|.+.. ..
T Consensus 73 ~~~V~~iig~~s~~~~~~~~~~~~~---~iP~i~~~~-~~~~~~~~---~~-~~~f~~~~~~~~~~~~~~~~l~~~~-g~ 143 (392)
T 3lkb_A 73 RFKIPVFLSYATGANLQLKPLIQEL---RIPTIPASM-HIELIDPP---NN-DYIFLPTTSYSEQVVALLEYIAREK-KG 143 (392)
T ss_dssp TTCCSCEEECCHHHHHHHHHHHHHH---TCCEEESCC-CGGGGSSS---SC-TTBCEEECCHHHHHHHHHHHHHHHC-TT
T ss_pred hcCcEEEEeCCcHHHHHHHHHHHhC---CceEEeccc-ChhhccCC---CC-CceEecCCChHHHHHHHHHHHHHhC-CC
Confidence 3478888886666666666666554 456665433 22222111 00 1111123332 23455666665532 34
Q ss_pred CEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEE-EChHHHHHHHHHhccc
Q 022234 178 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDT 249 (300)
Q Consensus 178 ~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivf-tS~s~v~~~~~~~~~~ 249 (300)
++|.++..+.. ...+.+.|++.|..+.....|... ..+....+..+ .++|+|++ .+...+-.+++.+.+.
T Consensus 144 ~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~ 221 (392)
T 3lkb_A 144 AKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG--NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRL 221 (392)
T ss_dssp CEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT
T ss_pred CEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC--CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHc
Confidence 78888865432 346788899999887655555431 12222233333 47898885 7777888888887765
Q ss_pred CCCCceEEEe
Q 022234 250 EQWSNSVACI 259 (300)
Q Consensus 250 ~~~~~~vv~I 259 (300)
+ .+.+++..
T Consensus 222 g-~~~~~~~~ 230 (392)
T 3lkb_A 222 G-LKMRHLGA 230 (392)
T ss_dssp T-CCCEEEEC
T ss_pred C-CCceEEEe
Confidence 4 35666654
No 144
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=72.41 E-value=22 Score=29.06 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=66.1
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeeee-------------EeeeC--CCchhHHHhhhcCCccEEEEeChHHHHH
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLI-------------QHAQG--PDTDRLSSVLNDTIFDWIIITSPEAGSV 115 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i-------------~~~~~--~~~~~l~~~l~~~~~d~ivFTS~~av~~ 115 (300)
|+|+|.....-...+++.|.+.|.++..+-.- .+... .+.+.+.+. .....|.+|.+.++....
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a-~i~~ad~vi~~~~~d~~n 79 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDA-EVSKNDVVVILTPRDEVN 79 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHH-TCCTTCEEEECCSCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhc-CcccCCEEEEecCCcHHH
Confidence 45677765545567777777777776654310 01111 111222221 356899999988776544
Q ss_pred HHHH-HHHcCCCCceEEE--EccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 116 FLEA-WKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 116 ~~~~-l~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
..-. ..+......++++ -++...+.+++. |.+..+.|....+..|.+.+.
T Consensus 80 ~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~------G~d~vi~p~~~~~~~l~~~~~ 132 (218)
T 3l4b_C 80 LFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKM------GITTVLNLTTLITNTVEALIF 132 (218)
T ss_dssp HHHHHHHHHTSCCCEEEECCCSGGGHHHHHHH------TCEECCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCeEEEEEeCcchHHHHHHC------CCCEEECHHHHHHHHHHHHhc
Confidence 3322 2222223445554 567788899998 998766776666677776654
No 145
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=71.38 E-value=4.2 Score=30.85 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=40.8
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH---------HHHHHHHHHHHcCCCCceEEE
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGV 132 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~---------av~~~~~~l~~~~~~~~~i~a 132 (300)
++.+++.|++.|+++..+++-+. +.. ++..+|.|+|-|+. .+..|++.+... +.+.++++
T Consensus 16 A~~ia~~l~~~g~~v~~~~~~~~----~~~------~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~ 84 (138)
T 5nul_A 16 AELIAKGIIESGKDVNTINVSDV----NID------ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVAL 84 (138)
T ss_dssp HHHHHHHHHHTTCCCEEEEGGGC----CHH------HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEhhhC----CHH------HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEE
Confidence 34566667788987765544221 111 24579999998873 478888877654 56778888
Q ss_pred Ec
Q 022234 133 VG 134 (300)
Q Consensus 133 VG 134 (300)
+|
T Consensus 85 f~ 86 (138)
T 5nul_A 85 FG 86 (138)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 146
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=70.63 E-value=28 Score=25.41 Aligned_cols=111 Identities=10% Similarity=0.123 Sum_probs=67.1
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHHhccc
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDT 249 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS----~s~v~~~~~~~~~~ 249 (300)
..+||++..+.. +..|.+.|+..|+.|.. +. ...+.++.+ ..+|+|++-- ..+.+ ++..+...
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~---~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~-~~~~l~~~ 75 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDM---VH------SAAQALEQVARRPYAAMTVDLNLPDQDGVS-LIRALRRD 75 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEE---EC------SHHHHHHHHHHSCCSEEEECSCCSSSCHHH-HHHHHHTS
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEE---EC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-HHHHHHhC
Confidence 368999987765 66788889998876422 11 122333332 4788887742 22333 44444442
Q ss_pred -CCCCceEEEeCHHHHH-H----HHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 250 -EQWSNSVACIGETTAS-A----AKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 250 -~~~~~~vv~IG~~Ta~-~----l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
...+++++.++..... . +.+.|.. .++....+.+.|.++|...+....
T Consensus 76 ~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~-~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 76 SRTRDLAIVVVSANAREGELEFNSQPLAVS-TWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp GGGTTCEEEEECTTHHHHHHHHCCTTTCCC-EEECSSCCHHHHHHHHHHHHHHHC
T ss_pred cccCCCCEEEEecCCChHHHHHHhhhcCCC-EEEeCCCCHHHHHHHHHHHHHhcC
Confidence 1246788777654332 2 2335665 366776799999999998886543
No 147
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=69.13 E-value=11 Score=37.26 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=71.0
Q ss_pred CCCEEEEEcC--CCC----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-H--------
Q 022234 176 KKCTVLYPAS--AKA----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-A-------- 238 (300)
Q Consensus 176 ~~~~vL~~rg--~~~----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s-~-------- 238 (300)
.+++|+++-+ +.. -..+.+.|++.|+.|..+-.-.-. ..+..+... ..+|+|++..+. +
T Consensus 528 ~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~----~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~ 603 (688)
T 2iuf_A 528 DGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXAN----NVDETYSASDAVQFDAVVVADGAEGLFGADSFT 603 (688)
T ss_dssp TTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCT----TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTT
T ss_pred CCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCc----ccccchhcCCccccCeEEecCCCcccccccccc
Confidence 5789999988 432 346788999999999777763211 111111111 368999998773 2
Q ss_pred -----------------HHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCC----eEEecCCCCHHHHHHHHHHHHHcc
Q 022234 239 -----------------VRSWVNLISDTEQWSNSVACIGETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 239 -----------------v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~----~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
+..|+...-+ +...|.+||... ..|.+.|+. -++.+..+ .++.++.+.+.+.+|
T Consensus 604 ~~~~~~~~~~~L~~~~~~~~~v~~~~~---~gKpIaAIc~ap-~vL~~aGi~~~d~GVvts~~~-~~~f~~~fi~~la~h 678 (688)
T 2iuf_A 604 VEPSAGSGASTLYPAGRPLNILLDAFR---FGKTVGALGSGS-DALESGQISSERQGVYTGKNA-GDAFAKDIKSGLSTF 678 (688)
T ss_dssp CCCCTTSCCCSSSCTTHHHHHHHHHHH---HTCEEEEEGGGH-HHHHHTTCCTTSTTEEEESSS-SHHHHHHHHHHHHHC
T ss_pred cccccccchhhcccChHHHHHHHHHHH---cCCEEEEECchH-HHHHHcCCCCCCCCEEEcCCc-cHHHHHHHHHHHHhC
Confidence 2222222211 356777776543 377788884 24555555 567888888888887
Q ss_pred CC
Q 022234 298 GH 299 (300)
Q Consensus 298 ~~ 299 (300)
++
T Consensus 679 R~ 680 (688)
T 2iuf_A 679 KF 680 (688)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 148
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=68.83 E-value=12 Score=32.43 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=46.1
Q ss_pred CCeEEEeCC---CCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC-------hHHHHHHHHH
Q 022234 50 NPKVVVTRE---RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS-------PEAGSVFLEA 119 (300)
Q Consensus 50 g~~VlitR~---~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS-------~~av~~~~~~ 119 (300)
.++||+.-. ...+..+.+.|++.|++|..++.-.+.. +.+ .+..||.||+.. +..++.+.+.
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~--~~~------~L~~yDvIIl~d~~~~~l~~~~~~~L~~y 75 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLD--VGE------LLAKQDLVILSDYPAERMTAQAIDQLVTM 75 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBC--SSH------HHHTCSEEEEESCCGGGBCHHHHHHHHHH
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccccc--Chh------HHhcCCEEEEcCCccccCCHHHHHHHHHH
Confidence 467888743 3466789999999999998877543211 112 356899999974 3344555554
Q ss_pred HHHcCCCCceEEEEcc
Q 022234 120 WKEAGTPNVRIGVVGA 135 (300)
Q Consensus 120 l~~~~~~~~~i~aVG~ 135 (300)
..+ +.-++++|.
T Consensus 76 V~~----GGgLi~~gG 87 (259)
T 3rht_A 76 VKA----GCGLVMLGG 87 (259)
T ss_dssp HHT----TCEEEEECS
T ss_pred HHh----CCeEEEecC
Confidence 442 345666654
No 149
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=68.80 E-value=24 Score=31.63 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=88.2
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHHcCC
Q 022234 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKEAGT 125 (300)
Q Consensus 47 ~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~~~ 125 (300)
++..++||++++-. ++..+.|++ ++++...+- ..+.+++.. ...++|.++..+...+ +.+++.+
T Consensus 27 ~~~~~~vl~~~~~~--~~~~~~L~~-~~~v~~~~~-----~~~~~~~~~--~~~~~d~li~~~~~~i~~~~l~~~----- 91 (340)
T 4dgs_A 27 RNVKPDLLLVEPMM--PFVMDELQR-NYSVHRLYQ-----AADRPALEA--ALPSIRAVATGGGAGLSNEWMEKL----- 91 (340)
T ss_dssp ------CEECSCCC--HHHHHTHHH-HSCCEETTC-----GGGHHHHHH--HGGGCCEEEEETTTCBCHHHHHHC-----
T ss_pred CCCCCEEEEECCCC--HHHHHHHhc-CCcEEEeCC-----CCCHHHHHH--HhCCcEEEEEcCCCCCCHHHHhhC-----
Confidence 34457799999864 556677754 566554321 112233322 2368999987664333 2233322
Q ss_pred CCceEEE-Eccch----HHHHHHHhhccCCCccccccCCCCcHHHHHHh----c---cc---------------------
Q 022234 126 PNVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE----L---PK--------------------- 172 (300)
Q Consensus 126 ~~~~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~----L---~~--------------------- 172 (300)
+++|+++ .|... .+++++. |+.+...|.. +++..++. + .+
T Consensus 92 p~Lk~I~~~g~G~d~id~~~a~~~------gI~V~n~pg~-~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~ 164 (340)
T 4dgs_A 92 PSLGIIAINGVGTDKVDLARARRR------NIDVTTTPGV-LADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLP 164 (340)
T ss_dssp SSCCEEEEESSCCTTBCHHHHHHT------TCEEECCCSS-SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------C
T ss_pred CCCEEEEECCCCccccCHHHHHhC------CEEEEECCCC-CcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcC
Confidence 2344433 44433 3577888 9998777753 33332221 1 10
Q ss_pred --CCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCc----HHHHHHcCCCCEEEEEChHH
Q 022234 173 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD----QTVLKQALSIPVVAVASPSA 238 (300)
Q Consensus 173 --~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~----~~~~~~l~~~d~IvftS~s~ 238 (300)
....|+++.+++-..-...+...|+..|.+| ..|.+.+..... ..+.+.+...|+|++.-|.+
T Consensus 165 ~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t 233 (340)
T 4dgs_A 165 LGHSPKGKRIGVLGLGQIGRALASRAEAFGMSV---RYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAAS 233 (340)
T ss_dssp CCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEE---EEECSSCCTTSCCEECSSHHHHHHTCSEEEECC---
T ss_pred ccccccCCEEEEECCCHHHHHHHHHHHHCCCEE---EEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCC
Confidence 1125788988877666677888999999765 455544322110 12223345789999987743
No 150
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=68.59 E-value=40 Score=26.29 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=52.9
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHH-----HHHHHHhcccCCCCceEEEeC----
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAV-----RSWVNLISDTEQWSNSVACIG---- 260 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v-----~~~~~~~~~~~~~~~~vv~IG---- 260 (300)
+.+.+.|.+.|++|..+.+.+ . ....++...+.+.|.|+|-||.-. ..|+..+......+.+++++|
T Consensus 23 ~~ia~~l~~~g~~v~~~~~~~---~-~~~~~~~~~~~~~d~ii~Gspty~g~~p~~~~l~~l~~~~~~~k~va~fgs~g~ 98 (159)
T 3fni_A 23 QAIINGITKTGVGVDVVDLGA---A-VDLQELRELVGRCTGLVIGMSPAASAASIQGALSTILGSVNEKQAVGIFETGGG 98 (159)
T ss_dssp HHHHHHHHHTTCEEEEEESSS---C-CCHHHHHHHHHTEEEEEEECCBTTSHHHHHHHHHHHHHHCCTTSEEEEECCSSS
T ss_pred HHHHHHHHHCCCeEEEEECcC---c-CCHHHHHHHHHhCCEEEEEcCcCCCCccHHHHHHHHHhhcccCCEEEEEEcCCC
Confidence 356777888887654333321 1 023344444567899999998421 345555443323455666655
Q ss_pred -----HHHHHHHHHcCCCeE----EecCCCCHHHH
Q 022234 261 -----ETTASAAKRLGLKNV----YYPTHPGLEGW 286 (300)
Q Consensus 261 -----~~Ta~~l~~~G~~~~----~v~~~p~~~~l 286 (300)
....+.+++.|++++ .+-..|+.+++
T Consensus 99 ~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl 133 (159)
T 3fni_A 99 DDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTY 133 (159)
T ss_dssp CBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHH
Confidence 345667778898742 23456776653
No 151
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=68.58 E-value=42 Score=28.99 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=73.7
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCCC-----hhHHHHH--------HHhC-CCeeEEEEeeeeeeCCCCcHHHHHHc--
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEG--------LSNR-GFEVVRLNTYTTEPVHHVDQTVLKQA-- 225 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~--------L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~l-- 225 (300)
..+.+...+........+|++.+-... ...+... |+.. |++|..+-. ..+.+++.+..
T Consensus 105 ~~~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~------~vp~e~iv~aa~e 178 (262)
T 1xrs_B 105 SMEETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS------QVANEDFIKKAVE 178 (262)
T ss_dssp CHHHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS------SBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC------CCCHHHHHHHHHH
Confidence 345555566544433457776654322 2333333 7788 977643332 12233344333
Q ss_pred CCCCEEEEEChHH--------HHHHHHHhcccCCC-CceEEEeCHH-HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 226 LSIPVVAVASPSA--------VRSWVNLISDTEQW-SNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 226 ~~~d~IvftS~s~--------v~~~~~~~~~~~~~-~~~vv~IG~~-Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
.++|+|.+++..+ ++.+.+.+++.+.. ++++++=|.. +.+.+++.|... +..+......+++.+.+.+.
T Consensus 179 ~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~a~~iGad~-~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 179 LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIAKELGYDA-GFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTTTCSE-EECTTCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHcCCeE-EECCchHHHHHHHHHHHHHH
Confidence 4889888877333 33345555554332 4788777754 556677789875 45666688888888877665
Q ss_pred c
Q 022234 296 E 296 (300)
Q Consensus 296 ~ 296 (300)
.
T Consensus 258 ~ 258 (262)
T 1xrs_B 258 D 258 (262)
T ss_dssp H
T ss_pred h
Confidence 4
No 152
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=68.20 E-value=33 Score=30.38 Aligned_cols=146 Identities=7% Similarity=-0.076 Sum_probs=82.9
Q ss_pred cCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCCC
Q 022234 99 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 177 (300)
Q Consensus 99 ~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~ 177 (300)
....+.||-.+..........+.+. +++++..+... ... .. .......|.. ..+..+++.+.+.. +.
T Consensus 74 ~~~V~~iiG~~s~~~~a~~~~~~~~---~iP~i~~~~~~-~~~-~~------~~~f~~~~~~~~~~~~~~~~l~~~~-g~ 141 (391)
T 3eaf_A 74 RYGVIAIIGWGTADTEKLSDQVDTD---KITYISASYSA-KLL-VK------PFNFYPAPDYSTQACSGLAFLASEF-GQ 141 (391)
T ss_dssp TTCCSEEEECCHHHHHHHHHHHHHH---TCEEEESCCCG-GGT-TS------TTEECSSCCHHHHHHHHHHHHHHHH-CS
T ss_pred hcCcEEEEEcCcHHHHHHHHHHhhc---CCeEEecccch-hhc-CC------CcEEEeCCCHHHHHHHHHHHHHHhc-CC
Confidence 5678999886666666666666554 46666654332 211 12 2222233332 23456666665531 24
Q ss_pred CEEEEEcC-CC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHH--c--CCCCEEEEECh-HHHHHHHHHh
Q 022234 178 CTVLYPAS-AK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--A--LSIPVVAVASP-SAVRSWVNLI 246 (300)
Q Consensus 178 ~~vL~~rg-~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--l--~~~d~IvftS~-s~v~~~~~~~ 246 (300)
++|.++.+ +. ..+.+.+.|++.|+.+.....|... ..+....+.. + .++|+|++.+. ..+..+++.+
T Consensus 142 ~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~ 219 (391)
T 3eaf_A 142 GKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLR--ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAM 219 (391)
T ss_dssp EEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTT--CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHH
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCC--CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHH
Confidence 68888877 33 3456778888999877555555431 1112223333 3 47898888765 6677777777
Q ss_pred cccCCCCceEEEe
Q 022234 247 SDTEQWSNSVACI 259 (300)
Q Consensus 247 ~~~~~~~~~vv~I 259 (300)
.+.+ .+.+++..
T Consensus 220 ~~~g-~~~~~~~~ 231 (391)
T 3eaf_A 220 AKVG-LDAFLLTN 231 (391)
T ss_dssp HHHT-CCCEEEEC
T ss_pred HHCC-CCceEEEe
Confidence 6654 35566554
No 153
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=68.16 E-value=10 Score=32.17 Aligned_cols=34 Identities=9% Similarity=0.041 Sum_probs=28.2
Q ss_pred CCCCCCeEEEeCCC-----------------CchHHHHHHHHhCCCCEEEe
Q 022234 46 ASNSNPKVVVTRER-----------------GKNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 46 ~~l~g~~VlitR~~-----------------~~~~~l~~~L~~~G~~v~~~ 79 (300)
++|.|++||||... .-...+++.|.++|++|..+
T Consensus 4 ~~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~ 54 (226)
T 1u7z_A 4 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLV 54 (226)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEE
Confidence 46889999999872 35679999999999999764
No 154
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=67.95 E-value=25 Score=31.13 Aligned_cols=149 Identities=11% Similarity=-0.001 Sum_probs=79.8
Q ss_pred cCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCC
Q 022234 99 DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKK 176 (300)
Q Consensus 99 ~~~~d~ivFTS~~-av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~ 176 (300)
....|.||..... ........+.+. +++++.++..+.. ... ..-..+.+.. ..+..+++.|.+..
T Consensus 73 ~~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~~~--~~~------~~~~~v~~~~~~~~~~~~~~l~~~g-- 139 (385)
T 1pea_A 73 NRGVRFLVGCYMSHTRKAVMPVVERA---DALLCYPTPYEGF--EYS------PNIVYGGPAPNQNSAPLAAYLIRHY-- 139 (385)
T ss_dssp TTCCCEEEECCSHHHHHHHHHHHHHT---TCEEEECSCCCCC--CCC------TTEEECSCCGGGTHHHHHHHHHTTT--
T ss_pred hCCcEEEECCCchHHHHHHHHHHHhc---CceEEECCcccCc--cCC------CCEEEecCChHHhHHHHHHHHHHcc--
Confidence 3679999886433 344455555443 5677777653100 001 1111123332 33566777776553
Q ss_pred CCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC-hHHHHHHHHHhcc
Q 022234 177 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLISD 248 (300)
Q Consensus 177 ~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS-~s~v~~~~~~~~~ 248 (300)
.++|.++.++.. ...+.+.|++.|+.+.....|............++.+ .++|+|++.+ ...+-.+++.+.+
T Consensus 140 ~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~ 219 (385)
T 1pea_A 140 GERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIAR 219 (385)
T ss_dssp CSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHH
T ss_pred CcEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHH
Confidence 479988876532 2456778899998875433332100111111222322 3789999887 5566677777766
Q ss_pred cCCC--CceEEEeC
Q 022234 249 TEQW--SNSVACIG 260 (300)
Q Consensus 249 ~~~~--~~~vv~IG 260 (300)
.+.. ..+++..+
T Consensus 220 ~G~~~~~~~~~~~~ 233 (385)
T 1pea_A 220 RYGDGRRPPIASLT 233 (385)
T ss_dssp HHCSSCCCCEEESS
T ss_pred cCCCcCCceEEecc
Confidence 5432 25565543
No 155
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=67.86 E-value=40 Score=29.39 Aligned_cols=146 Identities=8% Similarity=0.056 Sum_probs=80.5
Q ss_pred CCccEEEEe-ChHHHHHHHH--HHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCC
Q 022234 100 TIFDWIIIT-SPEAGSVFLE--AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK 175 (300)
Q Consensus 100 ~~~d~ivFT-S~~av~~~~~--~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~ 175 (300)
...+.||-. +......... .+.+. +++++..+.... .+.+. ..-..+.|.. ..+..+++.|...
T Consensus 72 ~~v~~iig~~~s~~~~~~~~~~~~~~~---~iP~v~~~~~~~-~~~~~------~~~f~~~~~~~~~~~~~~~~l~~~-- 139 (364)
T 3lop_A 72 DNPVALLTVVGTANVEALMREGVLAEA---RLPLVGPATGAS-SMTTD------PLVFPIKASYQQEIDKMITALVTI-- 139 (364)
T ss_dssp SCEEEEECCCCHHHHHHHHHTTHHHHH---TCCEESCSCCCG-GGGSC------TTEECCSCCHHHHHHHHHHHHHHT--
T ss_pred cCcEEEEecCCCHHHHhhCchhhHHhc---CCcEEEcccCcH-hhccC------CcEEEeCCChHHHHHHHHHHHHHc--
Confidence 578888853 4444555555 55553 456665554322 12111 2211223332 2245666666643
Q ss_pred CCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC-hHHHHHHHHHhc
Q 022234 176 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLIS 247 (300)
Q Consensus 176 ~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS-~s~v~~~~~~~~ 247 (300)
..++|.++.++.. ...+.+.|++.|+.+.....|... ..+....+..+ .++|+|++.+ ...+..+++.+.
T Consensus 140 g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~ 217 (364)
T 3lop_A 140 GVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRN--TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYR 217 (364)
T ss_dssp TCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT--SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHH
T ss_pred CCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCC--CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHH
Confidence 3468888766432 346778899999887655555432 22222333333 4789888844 666777888777
Q ss_pred ccCCCCceEEEeC
Q 022234 248 DTEQWSNSVACIG 260 (300)
Q Consensus 248 ~~~~~~~~vv~IG 260 (300)
+.+ .+.+++..+
T Consensus 218 ~~g-~~~~~i~~~ 229 (364)
T 3lop_A 218 ARG-GEAQLLGLS 229 (364)
T ss_dssp HTT-CCCEEEECT
T ss_pred HcC-CCCeEEEec
Confidence 654 355666543
No 156
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=67.69 E-value=70 Score=28.76 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=57.6
Q ss_pred CEEEEEcCC-CC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHH
Q 022234 178 CTVLYPASA-KA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVN 244 (300)
Q Consensus 178 ~~vL~~rg~-~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~-------s~v~~~~~ 244 (300)
.+++++-+. .+ .+.+.+.|.+.|+++..+.+.+. ....+.+.+...|.|+|.|| ..++.|++
T Consensus 257 ~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~-----~~~~~~~~l~~~D~iiigsP~y~~~~~~~~k~fld 331 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS-----DITKVALHTYDSGAVAFASPTLNNTMMPSVAAALN 331 (414)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC-----CHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHH
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC-----CHHHHHHHHHhCCEEEEEcCccCcCchHHHHHHHH
Confidence 466555333 33 23466677778876655444321 22233444568999999987 57888988
Q ss_pred HhcccCC-CCceEEEeC---------HHHHHHHHH-cCCCeE-----EecCCCCHHH
Q 022234 245 LISDTEQ-WSNSVACIG---------ETTASAAKR-LGLKNV-----YYPTHPGLEG 285 (300)
Q Consensus 245 ~~~~~~~-~~~~vv~IG---------~~Ta~~l~~-~G~~~~-----~v~~~p~~~~ 285 (300)
.+..... .+.+++.+| ....+.+.. .|+.++ .....|+.+.
T Consensus 332 ~l~~~~~~~~K~~~~~~t~g~~~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~ 388 (414)
T 2q9u_A 332 YVRGLTLIKGKPAFAFGAFGWSNRAVPDIVAELRDGCKADVYDEKGITFKFNYTEEL 388 (414)
T ss_dssp HHHHHTTTTTSBEEEEEEESSSCCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHH
T ss_pred HHHhhcccCCCEEEEEEecCCCchhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHH
Confidence 7654222 233433332 344556667 787642 2234566554
No 157
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=67.45 E-value=14 Score=31.18 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=46.0
Q ss_pred CCCEEEEEC---------hHHHHHHHHHhcccC--CCCceEEEeCHHHHHHHHHcCCCeE--E--ecCCCCHH---HHHH
Q 022234 227 SIPVVAVAS---------PSAVRSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNV--Y--YPTHPGLE---GWVD 288 (300)
Q Consensus 227 ~~d~IvftS---------~s~v~~~~~~~~~~~--~~~~~vv~IG~~Ta~~l~~~G~~~~--~--v~~~p~~~---~l~~ 288 (300)
+..+|++|| .+.++...+.+.+.. ..+..+++||.+..+.+++.|..+. + ..+.|+.+ .+.+
T Consensus 57 ~~~~IvitSDrGLcG~~Nsni~k~~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~a~~i~~ 136 (230)
T 1fs0_G 57 RVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVK 136 (230)
T ss_dssp EEEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTTCCCSHHHHHHHH
T ss_pred cEEEEEEeCCccccccccHHHHHHHHHHHHHhhcCCCcEEEEEEeHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHH
Confidence 345899999 777777666554321 1356899999999999999988753 2 33456655 5555
Q ss_pred HHHHHHH
Q 022234 289 SILEALR 295 (300)
Q Consensus 289 ai~~~~~ 295 (300)
.+.+.+.
T Consensus 137 ~i~~~~~ 143 (230)
T 1fs0_G 137 VMLQAYD 143 (230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555443
No 158
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=67.23 E-value=34 Score=24.98 Aligned_cols=109 Identities=9% Similarity=0.076 Sum_probs=66.6
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC------hHHHHHHHHHhcc
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS------PSAVRSWVNLISD 248 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS------~s~v~~~~~~~~~ 248 (300)
.+||++..+.. +..|.+.|+..|+.|.. +. ...+.++.+ ..+|+|++-- ..+.+ ++..+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~-~~~~l~~ 76 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQC---FA------SAESFMRQQISDDAIGMIIEAHLEDKKDSGIE-LLETLVK 76 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEE---ES------SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHH-HHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEE---eC------CHHHHHHHHhccCCCEEEEeCcCCCCCccHHH-HHHHHHh
Confidence 58999877764 67788889888865531 11 122223223 3577777642 23333 4444444
Q ss_pred cCCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 249 TEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 249 ~~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
.. .+.+++.++ +.....+.+.|..- ++....+.+.|.++|.+.+....
T Consensus 77 ~~-~~~~ii~~s~~~~~~~~~~~~~~ga~~-~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 77 RG-FHLPTIVMASSSDIPTAVRAMRASAAD-FIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp TT-CCCCEEEEESSCCHHHHHHHHHTTCSE-EEESSBCHHHHHHHHHHHHHHHC
T ss_pred CC-CCCCEEEEEcCCCHHHHHHHHHcChHH-heeCCCCHHHHHHHHHHHHhccC
Confidence 32 456666653 34455666789874 56676799999999998776543
No 159
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=67.06 E-value=21 Score=25.62 Aligned_cols=112 Identities=11% Similarity=0.060 Sum_probs=63.3
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHHhcccC-
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDTE- 250 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~---s~v~~~~~~~~~~~- 250 (300)
.+||++..+.. +..|.+.|+..|+.|.. +. ...+.++.+ ..+|+|++--. ...-.++..++...
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 74 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADY---VM------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPM 74 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEE---ES------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEE---EC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhc
Confidence 47888877764 77888899998864321 11 122233332 47888887421 12223444444431
Q ss_pred CCCceEEEeCHHH-H--HHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccCC
Q 022234 251 QWSNSVACIGETT-A--SAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 299 (300)
Q Consensus 251 ~~~~~vv~IG~~T-a--~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~~ 299 (300)
..+.+++.++... . ..+.+.|.. .++....+.+.|.+.+..+.+.+.+
T Consensus 75 ~~~~~ii~~s~~~~~~~~~~~~~g~~-~~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 75 EKTSKFVAVSGFAKNDLGKEACELFD-FYLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp SSCCEEEEEECC-CTTCCHHHHHHCS-EEEESSCCHHHHHHHHHHHC-----
T ss_pred cCCCCEEEEECCcchhHHHHHHHhhH-HheeCCCCHHHHHHHHHHhhccCCC
Confidence 2466776654321 1 344456765 3667778999999999988776543
No 160
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=66.84 E-value=13 Score=31.16 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=37.5
Q ss_pred HHHHHHHhC-CCeeEEEEeeeeeeC-----------------C--CCcHHHHHHcCCCCEEEEECh-------HHHHHHH
Q 022234 191 EIEEGLSNR-GFEVVRLNTYTTEPV-----------------H--HVDQTVLKQALSIPVVAVASP-------SAVRSWV 243 (300)
Q Consensus 191 ~L~~~L~~~-G~~v~~~~vY~~~~~-----------------~--~~~~~~~~~l~~~d~IvftS~-------s~v~~~~ 243 (300)
.+.+.|++. |.+|..+.+++.... . ....++.+.+...|+|||.|| ..++.|+
T Consensus 23 ~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~lK~~i 102 (242)
T 1sqs_A 23 RLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVDTKNFI 102 (242)
T ss_dssp HHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHHHHHHH
Confidence 445566665 888877777654211 1 222334455668899999995 7899999
Q ss_pred HHhc
Q 022234 244 NLIS 247 (300)
Q Consensus 244 ~~~~ 247 (300)
+.+.
T Consensus 103 Dr~~ 106 (242)
T 1sqs_A 103 ERIG 106 (242)
T ss_dssp HHTG
T ss_pred HHHH
Confidence 9874
No 161
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=66.15 E-value=13 Score=31.85 Aligned_cols=71 Identities=14% Similarity=0.032 Sum_probs=47.1
Q ss_pred CEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeeeeCCCC------cHHHHHHcCCCCEEEEECh-------
Q 022234 178 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV------DQTVLKQALSIPVVAVASP------- 236 (300)
Q Consensus 178 ~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~------~~~~~~~l~~~d~IvftS~------- 236 (300)
.+||++.|... .+.+.+.+++.|++|..+.+++....... ..++.+.+...|+|||.||
T Consensus 35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sip 114 (247)
T 2q62_A 35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMT 114 (247)
T ss_dssp CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCC
T ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCcc
Confidence 58888877642 12456667778988888777664211111 1234445568899999995
Q ss_pred HHHHHHHHHhcc
Q 022234 237 SAVRSWVNLISD 248 (300)
Q Consensus 237 s~v~~~~~~~~~ 248 (300)
..+++|++.+..
T Consensus 115 a~LKn~iD~l~~ 126 (247)
T 2q62_A 115 GIMKAQIDWIPL 126 (247)
T ss_dssp HHHHHHHHTSCS
T ss_pred HHHHHHHHHhhh
Confidence 689999998754
No 162
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=65.88 E-value=62 Score=27.51 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHH
Q 022234 176 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWV 243 (300)
Q Consensus 176 ~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-----s~v~~~~ 243 (300)
.+++|++.+... +...+...|+.+|++|..+-. ..+. +++.+.. .++|+|.+++. ..++.+.
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~--~vp~----e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i 195 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGR--DVPA----EEVLAAVQKEKPIMLTGTALMTTTMYAFKEVN 195 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEE--ECCS----HHHHHHHHHHCCSEEEEECCCTTTTTHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--CCCH----HHHHHHHHHcCCCEEEEEeeccCCHHHHHHHH
Confidence 356888877653 456778889999999866655 1222 2333332 38899988873 3355566
Q ss_pred HHhcccCCCCceEEEeCHHHH-HHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 244 NLISDTEQWSNSVACIGETTA-SAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 244 ~~~~~~~~~~~~vv~IG~~Ta-~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
+.+++.+. ++++++-|..+. +..++.|. +..+. +....++.+.+.++
T Consensus 196 ~~l~~~~~-~~~v~vGG~~~~~~~~~~iga--d~~~~--da~~av~~~~~l~~ 243 (258)
T 2i2x_B 196 DMLLENGI-KIPFACGGGAVNQDFVSQFAL--GVYGE--EAADAPKIADAIIA 243 (258)
T ss_dssp HHHHTTTC-CCCEEEESTTCCHHHHHTSTT--EEECS--STTHHHHHHHHHHT
T ss_pred HHHHhcCC-CCcEEEECccCCHHHHHHcCC--eEEEC--CHHHHHHHHHHHHc
Confidence 66665433 488888886544 34455674 33333 44555666666554
No 163
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=65.82 E-value=46 Score=29.54 Aligned_cols=167 Identities=10% Similarity=0.059 Sum_probs=88.6
Q ss_pred CeEEEeCCCCchHHHHHHHHhC--CCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHHcCCCC
Q 022234 51 PKVVVTRERGKNGKLIKALAKH--RIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKEAGTPN 127 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~--G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~~~~~ 127 (300)
|+|+++..........+.|++. |+++...+-. .+ +++.+ ...++|.++..+...+ +.+++.+.+. +
T Consensus 2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~--~~~~~--~~~~~d~~i~~~~~~~~~~~l~~~~~~---~ 70 (333)
T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LT--PETVA--LAKGADGVVVYQQLDYIAETLQALADN---G 70 (333)
T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CC--TTTGG--GGTTCSEEEECCSSCBCHHHHHHHHHT---T
T ss_pred cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----Cc--HHHHH--HhcCCcEEEEcCCCCCCHHHHHhcccc---C
Confidence 6788876554455666777653 5565443321 11 12211 2467898887542221 3344555542 2
Q ss_pred ceEEE-Eccch----HHHHHHHhhccCCCccccccCCCCcHHHHHHh-----c--c-------------c--------CC
Q 022234 128 VRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L--P-------------K--------NG 174 (300)
Q Consensus 128 ~~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----L--~-------------~--------~~ 174 (300)
+|+++ .|..+ .+++++. |+.+...|. ++++.+++. | . . ..
T Consensus 71 Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 143 (333)
T 1j4a_A 71 ITKMSLRNVGVDNIDMAKAKEL------GFQITNVPV-YSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGRE 143 (333)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCCC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCC
T ss_pred CeEEEECCcccccccHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCccccc
Confidence 34433 23322 3567788 998877765 343332221 1 0 0 01
Q ss_pred CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCC------CcHHHHHHcCCCCEEEEEChHH
Q 022234 175 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH------VDQTVLKQALSIPVVAVASPSA 238 (300)
Q Consensus 175 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~------~~~~~~~~l~~~d~IvftS~s~ 238 (300)
..|+++.+++...-...+...|+..|++|. +|.+.+... ......+.+...|+|++.-|.+
T Consensus 144 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 210 (333)
T 1j4a_A 144 VRDQVVGVVGTGHIGQVFMQIMEGFGAKVI---TYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDV 210 (333)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCC
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEE---EECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCc
Confidence 256789998766666778889999997654 454432110 0001112234678888887743
No 164
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=65.29 E-value=52 Score=31.14 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=29.8
Q ss_pred cCCCCCCCeEEEe-CCCCchHHHHHHHHhCCCCEEEe
Q 022234 44 ASASNSNPKVVVT-RERGKNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 44 ~~~~l~g~~Vlit-R~~~~~~~l~~~L~~~G~~v~~~ 79 (300)
.++||.|.+|... --..+...|.+.|.+.|++|...
T Consensus 69 ~~~pl~G~ri~~~lh~~~~ta~li~tL~~~GA~V~~~ 105 (494)
T 3d64_A 69 AQQPLKGARIAGSLHMTIQTGVLIETLKALGADVRWA 105 (494)
T ss_dssp TTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCCCEEEEEeCCcHHHHHHHHHHHhCCCEEEEE
Confidence 4699999999995 44457789999999999999643
No 165
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=65.00 E-value=56 Score=32.53 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCCc-----hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-----HHHHHHH
Q 022234 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-----AGSVFLE 118 (300)
Q Consensus 49 ~g~~VlitR~~~~-----~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-----av~~~~~ 118 (300)
...+|++.....+ ..-.+..|+..|++|+..+... ..+++.+.....+.|.|+.+|-. .+..+.+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v-----~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~ 669 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQ-----TPEETARQAVEADVHVVGVSSLAGGHLTLVPALRK 669 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTB-----CHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCC-----CHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHH
Confidence 3456777766532 3456678899999999976632 12344333345688999988733 4566777
Q ss_pred HHHHcCCCCceEEEEc-cch--HHHHHHHhhccCCCccccccCCCCcHHHHHHhc
Q 022234 119 AWKEAGTPNVRIGVVG-AGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 170 (300)
Q Consensus 119 ~l~~~~~~~~~i~aVG-~~T--a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 170 (300)
.+++.+..++++++=| .-+ .+.+++. |..-.+.|.. +...++..+
T Consensus 670 ~L~~~G~~~i~VivGG~~p~~d~~~l~~~------GaD~~f~~gt-~~~e~a~~l 717 (727)
T 1req_A 670 ELDKLGRPDILITVGGVIPEQDFDELRKD------GAVEIYTPGT-VIPESAISL 717 (727)
T ss_dssp HHHHTTCTTSEEEEEESCCGGGHHHHHHT------TEEEEECTTC-CHHHHHHHH
T ss_pred HHHhcCCCCCEEEEcCCCccccHHHHHhC------CCCEEEcCCc-cHHHHHHHH
Confidence 7788787677777666 233 4778888 9987665543 444444443
No 166
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=64.84 E-value=9.4 Score=33.43 Aligned_cols=71 Identities=11% Similarity=-0.017 Sum_probs=47.4
Q ss_pred CEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeeeeCCC----C---cHHHHHHcCCCCEEEEECh------
Q 022234 178 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHH----V---DQTVLKQALSIPVVAVASP------ 236 (300)
Q Consensus 178 ~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~----~---~~~~~~~l~~~d~IvftS~------ 236 (300)
.+||++.|... .+.+.+.+++.|+++..+.+++...... . ..++.+.+...|+|||.||
T Consensus 59 mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~si 138 (279)
T 2fzv_A 59 VRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQI 138 (279)
T ss_dssp CEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEE
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccCc
Confidence 58888877643 2345667777898888877766421111 1 1234444567899999995
Q ss_pred -HHHHHHHHHhcc
Q 022234 237 -SAVRSWVNLISD 248 (300)
Q Consensus 237 -s~v~~~~~~~~~ 248 (300)
..+++|++.+..
T Consensus 139 pg~LKn~IDrl~~ 151 (279)
T 2fzv_A 139 TSVMKAQIDHLPL 151 (279)
T ss_dssp CHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHhh
Confidence 789999998854
No 167
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=64.47 E-value=14 Score=31.94 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=45.7
Q ss_pred CEEEEEcCC---CChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEC-------hHHHHHHHHHhc
Q 022234 178 CTVLYPASA---KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PSAVRSWVNLIS 247 (300)
Q Consensus 178 ~~vL~~rg~---~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS-------~s~v~~~~~~~~ 247 (300)
+++|++.|. .+...|.+.|++.|++|+.+..-+. ..+.+ .+.++|+||+.. +...+.+.+.+.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~---~~~~~----~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~ 77 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVG---LDVGE----LLAKQDLVILSDYPAERMTAQAIDQLVTMVK 77 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSC---BCSSH----HHHTCSEEEEESCCGGGBCHHHHHHHHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccc---ccChh----HHhcCCEEEEcCCccccCCHHHHHHHHHHHH
Confidence 589999764 5678899999999999877654321 11111 246899999874 445556666555
Q ss_pred ccCCCCceEEEeC
Q 022234 248 DTEQWSNSVACIG 260 (300)
Q Consensus 248 ~~~~~~~~vv~IG 260 (300)
+ .--++.+|
T Consensus 78 ~----GGgLi~~g 86 (259)
T 3rht_A 78 A----GCGLVMLG 86 (259)
T ss_dssp T----TCEEEEEC
T ss_pred h----CCeEEEec
Confidence 3 23455553
No 168
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=64.45 E-value=38 Score=29.23 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=80.4
Q ss_pred cCCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCC-CcHHHHHHhcccCCCC
Q 022234 99 DTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKK 176 (300)
Q Consensus 99 ~~~~d~ivFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~ 176 (300)
....+.||-. +..........+.+. +++++..+.. . +... .. ..-..+.|.. ..+..+++.|.+. .
T Consensus 67 ~~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~--~-~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~--g 134 (362)
T 3snr_A 67 ESKADVIMGSSVTPPSVAISNVANEA---QIPHIALAPL--P-ITPE---RA-KWSVVMPQPIPIMGKVLYEHMKKN--N 134 (362)
T ss_dssp TSCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCC--C-CCTT---TT-TTEEECSCCHHHHHHHHHHHHHHT--T
T ss_pred ccCceEEEcCCCcHHHHHHHHHHHHc---CccEEEecCC--c-cccC---CC-CcEEecCCChHHHHHHHHHHHHhc--C
Confidence 3478998864 344444555555543 4666666543 1 1111 00 1111123332 2345666666654 3
Q ss_pred CCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC-hHHHHHHHHHhcc
Q 022234 177 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLISD 248 (300)
Q Consensus 177 ~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS-~s~v~~~~~~~~~ 248 (300)
.++|.++..+.. ...+.+.|++.|+.+.....|... .......+..+ .++|+|++.+ ...+-.+++.+.+
T Consensus 135 ~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~ 212 (362)
T 3snr_A 135 VKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP--DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRE 212 (362)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHH
T ss_pred CCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC--CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHH
Confidence 478888854432 346778899999887655555432 22222223333 3789998887 7777778887776
Q ss_pred cCCCCceEEEe
Q 022234 249 TEQWSNSVACI 259 (300)
Q Consensus 249 ~~~~~~~vv~I 259 (300)
.+. +.+++.+
T Consensus 213 ~g~-~~p~i~~ 222 (362)
T 3snr_A 213 RGY-NGLIYQT 222 (362)
T ss_dssp TTC-CSEEEEC
T ss_pred cCC-CccEEec
Confidence 553 4455543
No 169
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=64.33 E-value=76 Score=31.27 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=77.8
Q ss_pred CcHHHHHHhcccCCCCCCEEEEEcCCCChhHHH---------HHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCC
Q 022234 161 ATGKILASELPKNGKKKCTVLYPASAKASNEIE---------EGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIP 229 (300)
Q Consensus 161 ~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~---------~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d 229 (300)
-+.+.+-+.+.+. ..+|++-+-...--++- ..|+..|++|..+-+ ...++++.+.. .++|
T Consensus 589 ls~eEi~~~i~e~---kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGv------dVPpEeIVeAA~EedAD 659 (763)
T 3kp1_A 589 LSEDEIREDIEKT---PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGT------SVPVEKLVDAAIELKAD 659 (763)
T ss_dssp CCHHHHHHHHHHS---CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCS------SBCHHHHHHHHHHTTCS
T ss_pred CCHHHHHhhhhcc---CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCC------CCCHHHHHHHHHHcCCC
Confidence 3456666666554 35888776554322233 358999988754433 22233444433 5889
Q ss_pred EEEEEChH--------HHHHHHHHhcccCCC-CceEEEeCH-HHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 230 VVAVASPS--------AVRSWVNLISDTEQW-SNSVACIGE-TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 230 ~IvftS~s--------~v~~~~~~~~~~~~~-~~~vv~IG~-~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
+|.+++-. .++.+.+.+++.+.. ++++++=|. .+.+.+++.|... +..+......+++.+.+.+..
T Consensus 660 VVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tqd~AkeIGADa-~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 660 AILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQGVDA-GFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp EEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCHHHHHTTTCSE-EECTTCCHHHHHHHHHHHHHH
T ss_pred EEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHcCCcE-EECCcchHHHHHHHHHHHHHH
Confidence 99988533 345566666665544 478888775 4566677789876 445666777888877776644
No 170
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=64.15 E-value=31 Score=26.07 Aligned_cols=107 Identities=12% Similarity=0.172 Sum_probs=64.8
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--C--CCCEEEEEC----hHHHHHHHHHhcc
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--L--SIPVVAVAS----PSAVRSWVNLISD 248 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~--~~d~IvftS----~s~v~~~~~~~~~ 248 (300)
.+||++..+.. +..|.+.|+..|+.+ +.++. ...+.++.+ . .+|+|++-- ..+.+ +++.+..
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v--~~~~~------~~~~al~~l~~~~~~~dliilD~~l~~~~g~~-~~~~lr~ 107 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNI--IDTAA------DGEEAVIKYKNHYPNIDIVTLXITMPKMDGIT-CLSNIME 107 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEE--EEEES------SHHHHHHHHHHHGGGCCEEEECSSCSSSCHHH-HHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeE--EEEEC------CHHHHHHHHHhcCCCCCEEEEeccCCCccHHH-HHHHHHh
Confidence 48999987764 677888999888665 21111 112222222 2 678777642 12332 3344433
Q ss_pred cCCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 249 TEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 249 ~~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
.. .+.+++.++ ......+.+.|..- ++....+.+.|.+.|...+.
T Consensus 108 ~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 108 FD-KNARVIMISALGKEQLVKDCLIKGAKT-FIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp HC-TTCCEEEEESCCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHTTC
T ss_pred hC-CCCcEEEEeccCcHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHHHhc
Confidence 22 345666553 55666777889874 66777799999999987654
No 171
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=64.09 E-value=21 Score=32.60 Aligned_cols=187 Identities=16% Similarity=0.047 Sum_probs=101.2
Q ss_pred hcCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEccchHH-HHHHHhhccCCCccccccCCCCcHH-HHHHhcccCC
Q 022234 98 NDTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS-IFEEVIQSSKCSLDVAFSPSKATGK-ILASELPKNG 174 (300)
Q Consensus 98 ~~~~~d~ivFTS~~-av~~~~~~l~~~~~~~~~i~aVG~~Ta~-~L~~~~~~~~~G~~~~~~p~~~~~e-~L~~~L~~~~ 174 (300)
....|+.||+.+.. .....++.+++.+.|. - +..|..... ...+. .....+..+.+.+. ..++.|.+.
T Consensus 84 ~~~gyk~II~n~~~~~~~~~i~~lkekrvDg-I-Ii~~~~~ed~~~i~~------~~di~V~~Dn~~Ggy~A~~~Li~~- 154 (371)
T 3qi7_A 84 DDKEVQAIVVSTDQAGLLPALQKVKEKRPEI-I-TISAPMGDDKNQLSQ------FVDVNLGVSAEERGKVLAERSKEM- 154 (371)
T ss_dssp GCTTEEEEEEECSSCCCHHHHHHHHHHCTTS-E-EEESSCCSCHHHHHH------HSSEEEECCHHHHHHHHHHHHHHT-
T ss_pred hcCCCeEEEEECCCcchHHHHHHHHhcCCCE-E-EEeccccccchhhcc------cCceEEEeChHHHHHHHHHHHHHC-
Confidence 45779999997654 1244456666666552 2 233432221 11122 22222333433333 334666654
Q ss_pred CCCCEEEEEcCCCC---------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCc----HHHHH--------HcCCCCEEEE
Q 022234 175 KKKCTVLYPASAKA---------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVD----QTVLK--------QALSIPVVAV 233 (300)
Q Consensus 175 ~~~~~vL~~rg~~~---------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~----~~~~~--------~l~~~d~Ivf 233 (300)
..++|.++.|... ..-+.+.|+++|+.+..... ..+..+.. .+++. .-..+++|..
T Consensus 155 -Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~--~d~t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFa 231 (371)
T 3qi7_A 155 -GAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQVNT--PNINTEEDKNKVKQFLNEDIEKQVKKYGKDINVFG 231 (371)
T ss_dssp -TCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEE--CCCSSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEE
T ss_pred -CCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCceeecC--CCCchHHHHHHHHHHHhccccchhhccCCCcEEEE
Confidence 3479999988642 23467889999988755421 11111111 11121 1135688888
Q ss_pred EChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 234 ASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 234 tS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
+|=..+.-+++.+.+.+. .++=-|--..+-..--.+|+.. .-.+.-+...+++.|++.+.+.+
T Consensus 232 tND~mAiG~ikal~e~Gi-~VPed~~psp~~~yp~alg~~~-~~~~~~d~~~i~~~i~~~~~~~g 294 (371)
T 3qi7_A 232 VNEYMDEVILTKALELKY-IVAEQSNPSPIQTYPSVMGLKI-SEKDAQNYDKINDMISEKAKAFG 294 (371)
T ss_dssp SSHHHHHHHHHHHHHHCC-BBCCCSSCCTTTTHHHHHTCCC-CGGGTTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCC-ccCCCCCCCccccCcchhcccc-ChhhccCHHHHHHHHHHHHHhcC
Confidence 888888888887776541 1111111122334555678763 12256799999999998876654
No 172
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=63.63 E-value=4.6 Score=33.27 Aligned_cols=59 Identities=8% Similarity=0.088 Sum_probs=43.4
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCC-CCcHHHHHHcCCCCEEEEEC-------hHHHHHHHHHhc
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVH-HVDQTVLKQALSIPVVAVAS-------PSAVRSWVNLIS 247 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~-~~~~~~~~~l~~~d~IvftS-------~s~v~~~~~~~~ 247 (300)
...+.+.+++.|.+|+.+.+|+..+.. .+..+..+.+...|.|||.| |..++.|++.+-
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~ 85 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVL 85 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHh
Confidence 445677888889899999999875432 22334455567889999988 478999999863
No 173
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=63.49 E-value=41 Score=24.66 Aligned_cols=112 Identities=9% Similarity=0.116 Sum_probs=61.4
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh----HHHHHHHHHHHHc
Q 022234 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP----EAGSVFLEAWKEA 123 (300)
Q Consensus 49 ~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~----~av~~~~~~l~~~ 123 (300)
.+++||+.-... ....+...|++.|+...... ..+..+....+....+|.|+.--. ++.+ +.+.+++.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~------~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~-~~~~lr~~ 76 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEF------VDNGAKALYQVQQAKYDLIILDIGLPIANGFE-VMSAVRKP 76 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEE------ESSHHHHHHHHTTCCCSEEEECTTCGGGCHHH-HHHHHHSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEE------ECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHH-HHHHHHhc
Confidence 467899887764 45678888999998743211 123333333445567898777432 3443 34445542
Q ss_pred -CCCCceEEEEcc-chHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcc
Q 022234 124 -GTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELP 171 (300)
Q Consensus 124 -~~~~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~ 171 (300)
...+.+++++.. .......+.+.. |.. ++++... +.+.|.+.+.
T Consensus 77 ~~~~~~pii~~s~~~~~~~~~~~~~~---ga~-~~l~Kp~~~~~~l~~~i~ 123 (144)
T 3kht_A 77 GANQHTPIVILTDNVSDDRAKQCMAA---GAS-SVVDKSSNNVTDFYGRIY 123 (144)
T ss_dssp STTTTCCEEEEETTCCHHHHHHHHHT---TCS-EEEECCTTSHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHHc---CCC-EEEECCCCcHHHHHHHHH
Confidence 234666666553 333333333221 544 3455566 7777776664
No 174
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=63.20 E-value=38 Score=24.20 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=60.0
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe----ChHHHHHHHHHHHHcC-
Q 022234 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT----SPEAGSVFLEAWKEAG- 124 (300)
Q Consensus 51 ~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT----S~~av~~~~~~l~~~~- 124 (300)
++||+.-... ....+...|++.|+++... .+..+..+.+....+|.|+.- ..++.+.. +.+++..
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~-~~l~~~~~ 73 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEA--------ENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVL-KKLQEKEE 73 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHH-HHHHTSTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHH-HHHHhccc
Confidence 5788876654 3467788889999876432 122333334445678887763 23455544 4454432
Q ss_pred CCCceEEEEcc-chHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 125 TPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 125 ~~~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
..+.+++.+.. .......+.+.. |.. ++....++.+.|...+..
T Consensus 74 ~~~~pii~~s~~~~~~~~~~~~~~---Ga~-~~l~KP~~~~~L~~~i~~ 118 (122)
T 3gl9_A 74 WKRIPVIVLTAKGGEEDESLALSL---GAR-KVMRKPFSPSQFIEEVKH 118 (122)
T ss_dssp TTTSCEEEEESCCSHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHH
T ss_pred ccCCCEEEEecCCchHHHHHHHhc---Chh-hhccCCCCHHHHHHHHHH
Confidence 34566666543 333332222111 554 355666778888776643
No 175
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=63.16 E-value=23 Score=31.08 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=23.7
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEe
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (300)
.++.+++||||...+ -...+++.|.+.|.++..+
T Consensus 6 ~~M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l 40 (346)
T 3i6i_A 6 VPSPKGRVLIAGATGFIGQFVATASLDAHRPTYIL 40 (346)
T ss_dssp -----CCEEEECTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEE
Confidence 446678999999865 3568889999999887754
No 176
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=62.56 E-value=17 Score=30.63 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=49.4
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEE----EeChHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWII----ITSPEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~iv----FTS~~av~~~~~~l 120 (300)
..+.|+++|||..... ...+++.|.++|++|+.+-. .....+++.+.+.....+..+ +|+..+++.+++.+
T Consensus 3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (252)
T 3h7a_A 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRR----NGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAA 78 (252)
T ss_dssp --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEES----SGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHH
Confidence 3567999999988753 46899999999998765421 111122232333211222222 47889999988887
Q ss_pred HHcCCCCceEEEEc
Q 022234 121 KEAGTPNVRIGVVG 134 (300)
Q Consensus 121 ~~~~~~~~~i~aVG 134 (300)
.+.+.-+.-|.+.|
T Consensus 79 ~~~g~id~lv~nAg 92 (252)
T 3h7a_A 79 DAHAPLEVTIFNVG 92 (252)
T ss_dssp HHHSCEEEEEECCC
T ss_pred HhhCCceEEEECCC
Confidence 66532233344444
No 177
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=62.39 E-value=20 Score=33.01 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=55.3
Q ss_pred CeEEEeCCC--C----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-------HHHHHH
Q 022234 51 PKVVVTRER--G----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-------AGSVFL 117 (300)
Q Consensus 51 ~~VlitR~~--~----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-------av~~~~ 117 (300)
.+|+|.... + -++.+++.|.+.|.+++.+-+...... +...+.. ...+++.|+|-||. .+..|+
T Consensus 266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~-~~s~i~~--~i~~~~~ivlGspT~~~~~~p~~~~~l 342 (410)
T 4dik_A 266 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERP-AISEILK--DIPDSEALIFGVSTYEAEIHPLMRFTL 342 (410)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCC-CHHHHHH--HSTTCSEEEEEECCTTSSSCHHHHHHH
T ss_pred cceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCC-CHHHHHH--HHHhCCeEEEEeCCcCCcCCHHHHHHH
Confidence 456665432 1 256788889999999886655544432 3233211 45789999998885 677777
Q ss_pred HHHHHcCCCCceEEEEcc
Q 022234 118 EAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 118 ~~l~~~~~~~~~i~aVG~ 135 (300)
..+......+.++++.|.
T Consensus 343 ~~l~~~~~~~K~~~~FGS 360 (410)
T 4dik_A 343 LEIIDKANYEKPVLVFGV 360 (410)
T ss_dssp HHHHHHCCCCCEEEEEEE
T ss_pred HHHHhcccCCCEEEEEEC
Confidence 777776667888888884
No 178
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=61.77 E-value=25 Score=30.58 Aligned_cols=115 Identities=17% Similarity=0.059 Sum_probs=68.2
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCC-Cc-hhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGP-DT-DRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA 123 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~-~~-~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~ 123 (300)
....|++|.+-.--+ +.+.+.+.+.++..+ +..|.+ +. +..... -+...|++++|...=+..-++.+-+.
T Consensus 137 ~~~~g~kV~vIG~fP----~i~~~~~~~~~l~V~---E~~p~~g~~p~~~~~~-~lp~~D~viiTgstlvN~Tl~~lL~~ 208 (270)
T 3l5o_A 137 NEVKGKKVGVVGHFP----HLESLLEPICDLSIL---EWSPEEGDYPLPASEF-ILPECDYVYITCASVVDKTLPRLLEL 208 (270)
T ss_dssp TTTTTSEEEEESCCT----THHHHHTTTSEEEEE---ESSCCTTCEEGGGHHH-HGGGCSEEEEETHHHHHTCHHHHHHH
T ss_pred cccCCCEEEEECCch----hHHHHHhcCCCEEEE---ECCCCCCCCChhHHHH-hhccCCEEEEEeehhhcCCHHHHHhh
Confidence 345689999886543 456666777665544 333332 22 221122 26789999999999888777766665
Q ss_pred CCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 124 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 124 ~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
..+...++.+||.|- .+-+.|. .|++..-.-.--+.+.+.+.+..
T Consensus 209 ~~~a~~vvl~GPStp-~~P~lf~---~Gv~~laG~~V~d~~~~~~~i~~ 253 (270)
T 3l5o_A 209 SRNARRITLVGPGTP-LAPVLFE---HGLQELSGFMVKDNARAFRIVAG 253 (270)
T ss_dssp TTTSSEEEEESTTCC-CCGGGGG---TTCSEEEEEEESCHHHHHHHHTT
T ss_pred CCCCCEEEEECCCch-hhHHHHh---cCcCEEEEEEEcCHHHHHHHHhc
Confidence 545667889999873 3333331 15543211112346777776653
No 179
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=61.53 E-value=59 Score=28.51 Aligned_cols=139 Identities=13% Similarity=0.008 Sum_probs=78.1
Q ss_pred cCCccEEEE-eChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccc--cccCCCC-cHHHHHHhcccCC
Q 022234 99 DTIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSKA-TGKILASELPKNG 174 (300)
Q Consensus 99 ~~~~d~ivF-TS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~--~~~p~~~-~~e~L~~~L~~~~ 174 (300)
....+.||= .+..........+.+. +++++..+..+. .+... . ..+. ...|... .+..+++.+.+.
T Consensus 71 ~~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~~-~~~~~---~--~~~~~f~~~~~~~~~~~~~~~~l~~~- 140 (379)
T 3n0w_A 71 RDGVDAIFDVVNSGTALAINNLVKDK---KKLAFITAAAAD-QIGGT---E--CNGYGIGFLYNFTSIVKTVVQAQLAK- 140 (379)
T ss_dssp HSCCCEEEECCCHHHHHHHHHHHHHH---TCEEEECSCCCT-TTTTT---T--CCSSEEECSCCHHHHHHHHHHHHHHT-
T ss_pred hCCceEEEcCCCcHHHHHHHHHHHHc---CceEEEcCCCch-hhhcc---c--CCCcEEEEeCChHHHHHHHHHHHHHc-
Confidence 367888883 4455555555656554 467777655432 22221 0 1111 1223221 245666666654
Q ss_pred CCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-HHHHHHHHHh
Q 022234 175 KKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLI 246 (300)
Q Consensus 175 ~~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-s~v~~~~~~~ 246 (300)
..+++.++..+.. .+.+.+.|++.|..+.....|.... .+....+..+ .++|+|++.+. ..+..+++.+
T Consensus 141 -g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~ 217 (379)
T 3n0w_A 141 -GYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFET--QDFSSYLLQAKASGAQLIVSTSGGAANINIMKQA 217 (379)
T ss_dssp -TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTC--CCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHH
T ss_pred -CCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCC--CCHHHHHHHHHHCCCCEEEEecccchHHHHHHHH
Confidence 4578888865543 4567788889998876665555322 2222233333 37898877654 6666777777
Q ss_pred cccC
Q 022234 247 SDTE 250 (300)
Q Consensus 247 ~~~~ 250 (300)
.+.+
T Consensus 218 ~~~g 221 (379)
T 3n0w_A 218 REFG 221 (379)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 7654
No 180
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=61.30 E-value=9.3 Score=29.23 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcC-CccEEEEeChH----------HHHHHHHHHHHcCCCCceEE
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDT-IFDWIIITSPE----------AGSVFLEAWKEAGTPNVRIG 131 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~-~~d~ivFTS~~----------av~~~~~~l~~~~~~~~~i~ 131 (300)
+.+++.|++.|+++..+++-...+ . .+. .+|.|||-+|. .++.|++.+....+.+.+++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~~----~------~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~~ 89 (148)
T 3f6r_A 20 QKLEELIAAGGHEVTLLNAADASA----E------NLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKVA 89 (148)
T ss_dssp HHHHHHHHTTTCEEEEEETTTBCC----T------TTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEEE
T ss_pred HHHHHHHHhCCCeEEEEehhhCCH----h------HhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEEE
Confidence 445555667787765544322211 1 244 78988887753 45666665544345567777
Q ss_pred EEcc
Q 022234 132 VVGA 135 (300)
Q Consensus 132 aVG~ 135 (300)
++|-
T Consensus 90 vfg~ 93 (148)
T 3f6r_A 90 AFAS 93 (148)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7754
No 181
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=61.12 E-value=45 Score=24.29 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHh-CCCeeEEEEeeeeeeCCCCcHHHHHHc---CCCCEEEEEC----hHHHHHHHHHhc
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSN-RGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVAS----PSAVRSWVNLIS 247 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~-~G~~v~~~~vY~~~~~~~~~~~~~~~l---~~~d~IvftS----~s~v~~~~~~~~ 247 (300)
..+||++..+.. +..|.+.|+. .|+.|. .+. ...+.++.+ ..+|+|++-- ....-.++..+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~---~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~ 74 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFI---EVE------NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIR 74 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEE---EEC------SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEE---EEC------CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHH
Confidence 368999987764 6778888988 886553 211 122233333 3578877642 222333444444
Q ss_pred cc-CCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 248 DT-EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 248 ~~-~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
.. ...+.+++.++ +.....+.+.|..- ++....+.+.|.++|...+....
T Consensus 75 ~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 75 NNSRTANTPVIIATKSDNPGYRHAALKFKVSD-YILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp HSGGGTTCCEEEEESCCCHHHHHHHHHSCCSE-EEESSCCTTHHHHHHHHHHCC--
T ss_pred hCcccCCCCEEEEeCCCCHHHHHHHHHcCCCE-EEECCCCHHHHHHHHHHHHHhcc
Confidence 41 12456666654 34556667789864 66777789999999998876543
No 182
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=61.07 E-value=73 Score=27.47 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=79.8
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccc--cccCCC-CcHHHHHHhcccCCC
Q 022234 100 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSK-ATGKILASELPKNGK 175 (300)
Q Consensus 100 ~~~d~ivFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~--~~~p~~-~~~e~L~~~L~~~~~ 175 (300)
...+.||-. +..........+.+. +++++..+... ..+... +... ...|.. ..+..+++.|.+..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~- 136 (356)
T 3ipc_A 68 DGVKFVVGHANSGVSIPASEVYAEN---GILEITPAATN-PVFTER------GLWNTFRTCGRDDQQGGIAGKYLADHF- 136 (356)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHTT---TCEEEESSCCC-GGGGSS------CCTTEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CCCcEEEcCCCcHHHHHHHHHHHhC---CCeEEecCCCC-cHhhcC------CCCcEEEecCChHHHHHHHHHHHHHhc-
Confidence 678998854 444445555555443 56776655433 222222 2221 123332 22445566555432
Q ss_pred CCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEE-EEChHHHHHHHHHhc
Q 022234 176 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVA-VASPSAVRSWVNLIS 247 (300)
Q Consensus 176 ~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Iv-ftS~s~v~~~~~~~~ 247 (300)
+.++|.++.++.. ...+.+.|++.|+.+.....|... .......++.+ .++|+|+ +.+...+..++..+.
T Consensus 137 g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~ 214 (356)
T 3ipc_A 137 KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVG--DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAA 214 (356)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHH
Confidence 3468888876542 346778899999887655555422 22222333333 4788888 455666667777776
Q ss_pred ccCCCCceEEEe
Q 022234 248 DTEQWSNSVACI 259 (300)
Q Consensus 248 ~~~~~~~~vv~I 259 (300)
+.+ .+.+++..
T Consensus 215 ~~g-~~~~~~~~ 225 (356)
T 3ipc_A 215 DQG-LKAKLVSG 225 (356)
T ss_dssp HHT-CCCEEEEC
T ss_pred HCC-CCCcEEEe
Confidence 654 24566553
No 183
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=60.68 E-value=46 Score=33.11 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=70.1
Q ss_pred CEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-----HHHHHHHH
Q 022234 178 CTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVNL 245 (300)
Q Consensus 178 ~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s-----~v~~~~~~ 245 (300)
.+|++.+-.. +.......|+..|++|..+.+ ...++++.+.. .+.|+|.+.|.. .+..+++.
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~------~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~ 670 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPL------FQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKE 670 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCT------TBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCC------CCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHHH
Confidence 5777664432 345667789999998854322 22344444443 588999888733 44555566
Q ss_pred hcccCCCCceEEEeC--HH-HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 246 ISDTEQWSNSVACIG--ET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 246 ~~~~~~~~~~vv~IG--~~-Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
+++.+..++++++=| |. -.+.+++.|+.-++ ....+...+++.+.+.+..
T Consensus 671 L~~~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f-~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 671 LDKLGRPDILITVGGVIPEQDFDELRKDGAVEIY-TPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp HHHTTCTTSEEEEEESCCGGGHHHHHHTTEEEEE-CTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEEcCCCccccHHHHHhCCCCEEE-cCCccHHHHHHHHHHHHHH
Confidence 665554466666654 22 25778999998644 5555888888888776643
No 184
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=60.50 E-value=45 Score=31.46 Aligned_cols=35 Identities=17% Similarity=0.037 Sum_probs=29.4
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEE
Q 022234 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~ 78 (300)
.++||.|.||...-.-. +...|.+.|.+.|++|..
T Consensus 40 ~~~pl~g~ri~~~lh~~~~ta~l~~tL~~~Ga~v~~ 75 (479)
T 1v8b_A 40 KDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRW 75 (479)
T ss_dssp TTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCCEEEEEeccHHHHHHHHHHHHHCCCEEEE
Confidence 56999999999876654 778999999999999953
No 185
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=60.45 E-value=49 Score=24.53 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=67.2
Q ss_pred CCCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC---hHHHHHHHHHhccc
Q 022234 176 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS---PSAVRSWVNLISDT 249 (300)
Q Consensus 176 ~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS---~s~v~~~~~~~~~~ 249 (300)
++.+||++..+.. +..|.+.|+..|... .+..+. ...+.++.+ ..+|.|++-- ....-.++..+...
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~-~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 86 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVN-VVGEAD------DGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSY 86 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEE-EEEEES------SHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeE-EEEEeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4568999987764 677888888877321 111111 122223222 3688887742 12222344444433
Q ss_pred CCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 250 EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 250 ~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
. .+.+++.++ +.....+.+.|..- ++....+.+.|.++|...+....
T Consensus 87 ~-~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 87 E-LPTRVLLISAHDEPAIVYQALQQGAAG-FLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp T-CSCEEEEEESCCCHHHHHHHHHTTCSE-EEETTCCHHHHHHHHHHHHHCC-
T ss_pred C-CCCeEEEEEccCCHHHHHHHHHcCCCE-EEecCCCHHHHHHHHHHHHcCCe
Confidence 2 356666654 34555667789874 66777799999999998876543
No 186
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=60.35 E-value=46 Score=24.10 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=64.3
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC---------hHHHHHHHHH
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS---------PSAVRSWVNL 245 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS---------~s~v~~~~~~ 245 (300)
.+||++..+.. +..+.+.|+..|+.|.. +. ...+.++.+ ..+|+|++-- ..+.+ ++..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~-~~~~ 73 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVIT---LS------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLF-WLHE 73 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEE---EC------CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHH-HHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEE---eC------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHH-HHHH
Confidence 57888877654 66788888888875531 11 122223222 3678877642 12332 3444
Q ss_pred hcccCCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 246 ISDTEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 246 ~~~~~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
+... ..+.+++.++ ......+.+.|..- ++....+.+.|.+.|...+...
T Consensus 74 l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 74 IKRQ-YRDLPVVLFTAYADIDLAVRGIKEGASD-FVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp HHHH-CTTCCEEEEEEGGGHHHHHHHHHTTCCE-EEEESCCHHHHHHHHHHHHTCC
T ss_pred HHhh-CcCCCEEEEECCCCHHHHHHHHHcCchh-eeeCCCCHHHHHHHHHHHHHhc
Confidence 4332 1356666654 23445566788864 5566668999999998887654
No 187
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=60.17 E-value=17 Score=30.14 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=62.4
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeee-----------eEeeeC--CCchhHHHhhhcCCccEEEEeChHHHHHH
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNDTIFDWIIITSPEAGSVF 116 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~-----------i~~~~~--~~~~~l~~~l~~~~~d~ivFTS~~av~~~ 116 (300)
.++|+|.....-...+++.|.+.|. +..+-- +..... .+.+.+.+. .....|.+|.+.++.....
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a-~i~~ad~vi~~~~~d~~n~ 86 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA-NVRGARAVIVDLESDSETI 86 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHT-TCTTCSEEEECCSCHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhc-CcchhcEEEEcCCCcHHHH
Confidence 4567887765556677888877776 543321 111111 121222221 3568999999887653333
Q ss_pred H--HHHHHcCCCCceEEEE--ccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhc
Q 022234 117 L--EAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 170 (300)
Q Consensus 117 ~--~~l~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 170 (300)
. ..+++.+. +.++++. .+...+.+++. |.+..+.|....+..|++.+
T Consensus 87 ~~~~~a~~~~~-~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~~ 137 (234)
T 2aef_A 87 HCILGIRKIDE-SVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRSI 137 (234)
T ss_dssp HHHHHHHHHCS-SSEEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHTS
T ss_pred HHHHHHHHHCC-CCeEEEEECCHhHHHHHHHC------CCCEEECHHHHHHHHHHHHH
Confidence 2 33444443 4466654 55667888888 99876666544444444433
No 188
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=59.78 E-value=45 Score=23.88 Aligned_cols=112 Identities=11% Similarity=0.082 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHHhcccC
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDTE 250 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~---s~v~~~~~~~~~~~ 250 (300)
+.+||++..+.. +..|.+.|++.|+.|. ++. ...+.++.+ ..+|+|++--. ...-.++..+....
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVE---IAH------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEE---EES------SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEE---EeC------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 468999987764 6778888998886553 111 122233322 47888777522 12223445454432
Q ss_pred C-CCceEEEeCH---HHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 251 Q-WSNSVACIGE---TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 251 ~-~~~~vv~IG~---~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
. ...+++.++. .....+.+.|... ++....+.+.|++.|.+....+.
T Consensus 77 ~~~~~~ii~~~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 77 VANQPKILVVSGLDKAKLQQAVTEGADD-YLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp CSSCCEEEEECCSCSHHHHHHHHHTCCE-EECSSCCHHHHHHHHHHHHC---
T ss_pred ccCCCeEEEEeCCChHHHHHHHHhChHH-HhhCCCCHHHHHHHHHHHcCCCC
Confidence 2 3456665543 3445566778864 67777899999999998876554
No 189
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=59.49 E-value=52 Score=30.48 Aligned_cols=140 Identities=13% Similarity=0.096 Sum_probs=80.5
Q ss_pred CeEEEeCCCCch--HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCc
Q 022234 51 PKVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNV 128 (300)
Q Consensus 51 ~~VlitR~~~~~--~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~ 128 (300)
++|-+...-+.. .++.+.|++.|+++..++.- ...+++. +.+.....+..++..- ...+.+.+.. ++
T Consensus 197 ~~vnilG~~~~~~~~ei~~lL~~~Gi~v~~~~~~-----~~~~el~---~~~~A~~ni~~~~~~~-~~A~~Le~~~--gi 265 (460)
T 2xdq_A 197 PPLVLFGSLPDPVVTQLTLELKKQGIKVSGWLPA-----KRYTELP---VIDEGYYVAGVNPFLS-RTATTLIRRR--KC 265 (460)
T ss_dssp CCEEEESCCCHHHHHHHHHHHGGGTCCEEEEESC-----SSGGGCC---CCCTTCEEEESSTTCH-HHHHHHHHTT--CC
T ss_pred CcEEEEEecCccHHHHHHHHHHHcCCeEEEEeCC-----CCHHHHH---ccccCcEEEEcCHhHH-HHHHHHHHHc--CC
Confidence 345555443333 47899999999999874221 1222221 3455666666666553 4445554432 33
Q ss_pred eEEE----Ec-cchHHHHHHHhhccCCCccccccCCCCc--HHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHHHhC
Q 022234 129 RIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNR 199 (300)
Q Consensus 129 ~i~a----VG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~ 199 (300)
+.+. +| ..|.+.|++.. .+.|.. |+... -..+.+.+.... ..|+++++..+..-.-.|...|.+.
T Consensus 266 P~~~~~~P~G~~~T~~~Lr~ia--~~~g~~----~e~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~el 339 (460)
T 2xdq_A 266 QLITAPFPIGPDGTRTWIEQIC--ATFGIQ----PQGLAEREAETWQKLSDYLELVRGKSVFFMGDNLLEISLARFLIRC 339 (460)
T ss_dssp EEECCCCSBHHHHHHHHHHHHH--HHTTCC----CCSCHHHHHHHHHTTHHHHHHHTTCEEEECCCSSCHHHHHHHHHHT
T ss_pred CceecCcCccHHHHHHHHHHHH--HHHCcC----HHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCchHHHHHHHHHHHC
Confidence 3333 56 77888888762 112443 22111 122333332211 2678999998877778899999999
Q ss_pred CCeeEEEE
Q 022234 200 GFEVVRLN 207 (300)
Q Consensus 200 G~~v~~~~ 207 (300)
|++|..+-
T Consensus 340 Gm~vv~~g 347 (460)
T 2xdq_A 340 GMRVLEIG 347 (460)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEeC
Confidence 99886643
No 190
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=59.32 E-value=41 Score=25.38 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=43.0
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcC-CCCEEEEECh----------HHHHHHHHHhcccCCCCceEEE
Q 022234 190 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL-SIPVVAVASP----------SAVRSWVNLISDTEQWSNSVAC 258 (300)
Q Consensus 190 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~-~~d~IvftS~----------s~v~~~~~~~~~~~~~~~~vv~ 258 (300)
+.+.+.|.+.|++|+.+.+.+. +. . .+. +.|.|+|-+| ..++.|++.+....+.+.++++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~---~~--~----~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~~v 90 (148)
T 3f6r_A 20 QKLEELIAAGGHEVTLLNAADA---SA--E----NLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKVAA 90 (148)
T ss_dssp HHHHHHHHTTTCEEEEEETTTB---CC--T----TTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEEEE
T ss_pred HHHHHHHHhCCCeEEEEehhhC---CH--h----HhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEEEE
Confidence 3566667777876654443222 11 1 134 6787777764 3677777776543333444444
Q ss_pred e--C-----------HHHHHHHHHcCCCe
Q 022234 259 I--G-----------ETTASAAKRLGLKN 274 (300)
Q Consensus 259 I--G-----------~~Ta~~l~~~G~~~ 274 (300)
+ | ....+.+++.|+++
T Consensus 91 fg~G~~~y~~~~~a~~~l~~~l~~~G~~~ 119 (148)
T 3f6r_A 91 FASGDQEYEHFCGAVPAIEERAKELGATI 119 (148)
T ss_dssp EEEECTTSSSTTTHHHHHHHHHHHTTCEE
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 4 3 34556677788864
No 191
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=58.77 E-value=9.6 Score=32.71 Aligned_cols=54 Identities=15% Similarity=0.037 Sum_probs=37.4
Q ss_pred CCCeEEEeCCC--CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 49 SNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 49 ~g~~VlitR~~--~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
.+|+|++.+.. +....+...|++.|+++..+.+..-.+.++ ...++|.||++-.
T Consensus 2 ~~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~--------~~~~~d~lIl~GG 57 (250)
T 3m3p_A 2 SLKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPA--------EIRDCSGLAMMGG 57 (250)
T ss_dssp CCCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCS--------CGGGSSEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcC--------ccccCCEEEECCC
Confidence 46788888643 456788999999999988777654332221 1346888888754
No 192
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=58.75 E-value=48 Score=23.83 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=65.4
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc---CCCCEEEEE----ChHHHHHHHHHhccc
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVA----SPSAVRSWVNLISDT 249 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l---~~~d~Ivft----S~s~v~~~~~~~~~~ 249 (300)
.+||++-.+.. +..+.+.|+..|+.. ++.. . ...+.+..+ ..+|+|+.- ..++.+ +++.+...
T Consensus 6 ~~iLivdd~~~~~~~l~~~L~~~g~~~----v~~~---~-~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~-~~~~lr~~ 76 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYED----VLEA---E-HGVEAWEKLDANADTKVLITDWNMPEMNGLD-LVKKVRSD 76 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCC----EEEE---S-SHHHHHHHHHHCTTCCEEEECSCCSSSCHHH-HHHHHHTS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCcE----EEEe---C-CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHH-HHHHHHhc
Confidence 57888877653 677888899888642 1111 1 112222222 357877752 223333 44444432
Q ss_pred C-CCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 250 E-QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 250 ~-~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
. ..+.+++.++ +.....+.+.|..- ++....+.+.|.+.|...++.+
T Consensus 77 ~~~~~~pii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~L~~~l~~~l~~~ 128 (129)
T 3h1g_A 77 SRFKEIPIIMITAEGGKAEVITALKAGVNN-YIVKPFTPQVLKEKLEVVLGTN 128 (129)
T ss_dssp TTCTTCCEEEEESCCSHHHHHHHHHHTCCE-EEESCCCHHHHHHHHHHHHCCC
T ss_pred CCCCCCeEEEEeCCCChHHHHHHHHcCccE-EEeCCCCHHHHHHHHHHHhccC
Confidence 2 2356666654 44556667789864 6777789999999999887653
No 193
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=58.21 E-value=1.2e+02 Score=28.20 Aligned_cols=202 Identities=11% Similarity=0.063 Sum_probs=106.5
Q ss_pred CCeEEEe-CC---CCchHHHHHHHHhCCCCEEEeeeeE-----------ee--eCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 50 NPKVVVT-RE---RGKNGKLIKALAKHRIDCLELPLIQ-----------HA--QGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 50 g~~Vlit-R~---~~~~~~l~~~L~~~G~~v~~~P~i~-----------~~--~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
..+|-+. .. ..+..++.+.|++.|+++..+|-+. .. +..+ ..+.++-+.++.+.-+..++..
T Consensus 169 ~~~VNii~G~~~~~~D~~eik~lL~~~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg-~~~~ei~~~~~A~~ni~~~~~~ 247 (458)
T 3pdi_B 169 PRQVNVLCSANLTPGDLEYIAESIESFGLRPLLIPDLSGSLDGHLDENRFNALTTGG-LSVAELATAGQSVATLVVGQSL 247 (458)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEESCHHHHSSSCCCSSCCTTCCSCS-BCHHHHGGGSSCSCEEEESGGG
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHcCCEEEEecCccccccCccccccccccCCCC-CCHHHHHhhhhCcEEEEecHHH
Confidence 4556555 43 2346799999999999999886431 10 1111 1222222445555555677775
Q ss_pred HHHHHHHHHHcCCCCceEEEEc-----cchHHHHHHHhhccCCCccccccCCCCc--HHHHHHhcccC--CCCCCEEEEE
Q 022234 113 GSVFLEAWKEAGTPNVRIGVVG-----AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYP 183 (300)
Q Consensus 113 v~~~~~~l~~~~~~~~~i~aVG-----~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~--~~~~~~vL~~ 183 (300)
....+.|++.. +++.+.++ ..|.+.|++.. .+.|.. +|+... -..+.+.+.+. ...|+|+.+.
T Consensus 248 -~~~A~~Le~~~--GiP~~~~~~p~G~~~T~~~l~~la--~~~g~~---~~~~i~~er~r~~~~~~d~~~~l~Gkrv~i~ 319 (458)
T 3pdi_B 248 -AGAADALAERT--GVPDRRFGMLYGLDAVDAWLMALA--EISGNP---VPDRYKRQRAQLQDAMLDTHFMLSSARTAIA 319 (458)
T ss_dssp -HHHHHHHHHHS--CCCEEEECCSCHHHHHHHHHHHHH--HHHSSC---CCHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -HHHHHHHHHHH--CCCEEecCCCcCHHHHHHHHHHHH--HHHCCc---hHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 45566665531 45555544 45667666651 111442 122111 11233333221 1267899998
Q ss_pred cCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHH
Q 022234 184 ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETT 263 (300)
Q Consensus 184 rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~T 263 (300)
.+..-.-.|...|.+.|+.+..+.++.... ... + . ..+-++......++.++... +.-++.-|..-
T Consensus 320 ~~~~~~~~l~~~L~elGm~vv~~~~~~~~~-~~~--~----~-~~~~v~~~D~~~le~~i~~~------~pDllig~~~~ 385 (458)
T 3pdi_B 320 ADPDLLLGFDALLRSMGAHTVAAVVPARAA-ALV--D----S-PLPSVRVGDLEDLEHAARAG------QAQLVIGNSHA 385 (458)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEEEESSCCS-CCT--T----T-TSSCEEESHHHHHHHHHHHH------TCSEEEECTTH
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEEECCCCh-hhh--h----C-ccCcEEeCCHHHHHHHHHhc------CCCEEEEChhH
Confidence 776555578899999999998887766321 110 0 0 12334444333333333322 23344445555
Q ss_pred HHHHHHcCCCe
Q 022234 264 ASAAKRLGLKN 274 (300)
Q Consensus 264 a~~l~~~G~~~ 274 (300)
...+++.|+.-
T Consensus 386 ~~~a~k~gip~ 396 (458)
T 3pdi_B 386 LASARRLGVPL 396 (458)
T ss_dssp HHHHHHTTCCE
T ss_pred HHHHHHcCCCE
Confidence 56677778754
No 194
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=58.04 E-value=52 Score=24.00 Aligned_cols=109 Identities=14% Similarity=0.104 Sum_probs=65.9
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHHhcccC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDTE 250 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS----~s~v~~~~~~~~~~~ 250 (300)
.+||++-.+.. +..+...|+..|+.|.. . . ...+.++.+ ..+|+|+.-- .++.+ +++.++...
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~---~-----~-~~~~al~~~~~~~~dlvl~D~~lp~~~g~~-~~~~lr~~~ 74 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRR---A-----A-SGEEALQQIYKNLPDALICDVLLPGIDGYT-LCKRVRQHP 74 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE---E-----S-SHHHHHHHHHHSCCSEEEEESCCSSSCHHH-HHHHHHHSG
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEE---e-----C-CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-HHHHHHcCC
Confidence 58888877654 67788889988866531 1 1 122233322 4788887742 12333 334443321
Q ss_pred -CCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 251 -QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 251 -~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
..+++++.++ ......+.+.|..- ++....+.+.|++.|...+...
T Consensus 75 ~~~~~pii~~t~~~~~~~~~~~~~~ga~~-~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 75 LTKTLPILMLTAQGDISAKIAGFEAGAND-YLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp GGTTCCEEEEECTTCHHHHHHHHHHTCSE-EEETTCCHHHHHHHHHHHHHC-
T ss_pred CcCCccEEEEecCCCHHHHHHHHhcCcce-EEeCCCCHHHHHHHHHHHHhcc
Confidence 2355666553 34445566789874 6777789999999999887643
No 195
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=57.89 E-value=11 Score=31.35 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=46.7
Q ss_pred CCCCCCeEEEeCC-C------CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHH
Q 022234 46 ASNSNPKVVVTRE-R------GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLE 118 (300)
Q Consensus 46 ~~l~g~~VlitR~-~------~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~ 118 (300)
..+.|++|++--. . +.-....+.|++.|+++..+.+.+ .+.++..+. +...|.|+++-.+.. .+.+
T Consensus 23 ~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~----~~~~~~~~~--l~~ad~I~l~GG~~~-~l~~ 95 (206)
T 3l4e_A 23 SNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT----ESLGEITTK--LRKNDFIYVTGGNTF-FLLQ 95 (206)
T ss_dssp CCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT----SCHHHHHHH--HHHSSEEEECCSCHH-HHHH
T ss_pred HHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CChHHHHHH--HHhCCEEEECCCCHH-HHHH
Confidence 4556888886631 1 123678899999999877765543 222333232 346899999998777 4556
Q ss_pred HHHHcCC
Q 022234 119 AWKEAGT 125 (300)
Q Consensus 119 ~l~~~~~ 125 (300)
.|++.++
T Consensus 96 ~L~~~gl 102 (206)
T 3l4e_A 96 ELKRTGA 102 (206)
T ss_dssp HHHHHTH
T ss_pred HHHHCCh
Confidence 6766553
No 196
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=57.87 E-value=52 Score=23.96 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC--hHHHHHHHHHhcccCC
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS--PSAVRSWVNLISDTEQ 251 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS--~s~v~~~~~~~~~~~~ 251 (300)
..+||++..+.. +..+...|+..|+.|. .+. ...+.++.+ ..+|+|++-- ......++..+....
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~- 73 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVI---WAK------NEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF- 73 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEE---EES------SHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC-
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEE---EEC------CHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC-
Confidence 358888877654 6678888988886543 111 122333333 3688887753 222223444444322
Q ss_pred CCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 252 WSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 252 ~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
.+.+++.++ ......+.+.|..- ++....+.+.|.+.|...+...
T Consensus 74 ~~~pii~ls~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 74 PDTKVAVLSAYVDKDLIINSVKAGAVD-YILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp TTCEEEEEESCCCHHHHHHHHHHTCSC-EEESSCCHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCcce-eEeCCCCHHHHHHHHHHHHhhc
Confidence 356777663 44456666788875 5666679999999998887654
No 197
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=57.24 E-value=8.3 Score=31.35 Aligned_cols=58 Identities=9% Similarity=0.185 Sum_probs=34.8
Q ss_pred HHHHH-HHhCCCeeEEEEeeeeee--------CCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHHHhcc
Q 022234 191 EIEEG-LSNRGFEVVRLNTYTTEP--------VHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISD 248 (300)
Q Consensus 191 ~L~~~-L~~~G~~v~~~~vY~~~~--------~~~~~~~~~~~l~~~d~IvftS~-------s~v~~~~~~~~~ 248 (300)
.+.+. |.+.|.++..+.+++... .+.....+.+.+...|.|+|.|| ..++.|++.+..
T Consensus 24 ~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~ 97 (197)
T 2vzf_A 24 YALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLDILPQ 97 (197)
T ss_dssp HHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHHhccc
Confidence 34455 666687777666654311 01111223344567899999986 578888887754
No 198
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=56.83 E-value=92 Score=26.54 Aligned_cols=145 Identities=9% Similarity=0.075 Sum_probs=79.9
Q ss_pred CCccEEEEeC-hHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCcc--ccccCCC-CcHHHHHHhcccCCC
Q 022234 100 TIFDWIIITS-PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD--VAFSPSK-ATGKILASELPKNGK 175 (300)
Q Consensus 100 ~~~d~ivFTS-~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~--~~~~p~~-~~~e~L~~~L~~~~~ 175 (300)
...+.||... ..........+.+. +++++..+... ..+... +.. ....|.. ..+..+++.|.+..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~- 136 (346)
T 1usg_A 68 DGIKYVIGHLCSSSTQPASDIYEDE---GILMISPGATN-PELTQR------GYQHIMRTAGLDSSQGPTAAKYILETV- 136 (346)
T ss_dssp TTCCEEECCSSHHHHHHHHHHHHHH---TCEEEECCCCC-GGGGSS------CCSSEEECSCCGGGHHHHHHHHHHHTT-
T ss_pred CCCCEEEcCCCcHHHHHHHHHHHHC---CCeEEeeCCCC-hHHhcC------CCCcEEeccCChHHHHHHHHHHHHHhc-
Confidence 5788888753 33344445555443 56777776543 222221 211 1123433 23456666665432
Q ss_pred CCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC-hHHHHHHHHHhc
Q 022234 176 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLIS 247 (300)
Q Consensus 176 ~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS-~s~v~~~~~~~~ 247 (300)
+.++|.++.++.. .+.+.+.|++.|+.+.....|... ..+....++.+ .++|+|++.+ ...+..+++.+.
T Consensus 137 g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~ 214 (346)
T 1usg_A 137 KPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAG--EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQAR 214 (346)
T ss_dssp CCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCC--CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHH
Confidence 3468888876542 235677888999887654444321 12222233333 4789999888 566677777776
Q ss_pred ccCCCCceEEE
Q 022234 248 DTEQWSNSVAC 258 (300)
Q Consensus 248 ~~~~~~~~vv~ 258 (300)
+.+. +.+++.
T Consensus 215 ~~g~-~~~~~~ 224 (346)
T 1usg_A 215 SVGL-KTQFMG 224 (346)
T ss_dssp HTTC-CCEEEE
T ss_pred HcCC-CCeEEe
Confidence 6542 455554
No 199
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=56.78 E-value=55 Score=23.96 Aligned_cols=110 Identities=11% Similarity=0.118 Sum_probs=67.1
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHHhccc
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDT 249 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS----~s~v~~~~~~~~~~ 249 (300)
..+||++..+.. +..+...|...|+.|. .+. ...+.++.+ ..+|+|++-- ..+. .++..+...
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~---~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~-~~~~~l~~~ 77 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDII---QCG------NAIEAVPVAVKTHPHLIITEANMPKISGM-DLFNSLKKN 77 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEE---EES------SHHHHHHHHHHHCCSEEEEESCCSSSCHH-HHHHHHHTS
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEE---EeC------CHHHHHHHHHcCCCCEEEEcCCCCCCCHH-HHHHHHHcC
Confidence 458898877754 6788888988885442 211 122222222 3688888742 2333 344555542
Q ss_pred -CCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 250 -EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 250 -~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
...+++++.++ ......+.+.|..- ++....+.+.|.+.|...+...
T Consensus 78 ~~~~~~pii~ls~~~~~~~~~~~~~~g~~~-~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 78 PQTASIPVIALSGRATAKEEAQLLDMGFID-FIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp TTTTTSCEEEEESSCCHHHHHHHHHHTCSE-EEESSCCHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHhCCCCE-EEeCCCCHHHHHHHHHHHHHHH
Confidence 12456666653 44555666789874 5667679999999998877543
No 200
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=56.45 E-value=46 Score=22.91 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=60.3
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC----hHHHHHHHHHHHHcC
Q 022234 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS----PEAGSVFLEAWKEAG 124 (300)
Q Consensus 50 g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS----~~av~~~~~~l~~~~ 124 (300)
+++||+.-... ....+...|+..|+++.... +..+....+....+|.+++-- .++. .+.+.+.+..
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~--------~~~~~~~~l~~~~~dlii~d~~~~~~~~~-~~~~~l~~~~ 71 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLV--------DGSTALDQLDLLQPIVILMAWPPPDQSCL-LLLQHLREHQ 71 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEES--------CHHHHHHHHHHHCCSEEEEECSTTCCTHH-HHHHHHHHTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEec--------CHHHHHHHHHhcCCCEEEEecCCCCCCHH-HHHHHHHhcc
Confidence 46788776654 45678888998898654321 223333333344688888753 2343 3445555543
Q ss_pred -CCCceEEEEccchH-HHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 125 -TPNVRIGVVGAGTA-SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 125 -~~~~~i~aVG~~Ta-~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
..+.+++++..... ..+.+. |.. ++.+...+.+.|...+...
T Consensus 72 ~~~~~~ii~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 72 ADPHPPLVLFLGEPPVDPLLTA------QAS-AILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp CCSSCCCEEEESSCCSSHHHHH------HCS-EECSSCSTTHHHHHHHHTT
T ss_pred ccCCCCEEEEeCCCCchhhhhc------CHH-HhccCCCCHHHHHHHHHHH
Confidence 24566666544322 133444 554 3455556777787777543
No 201
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=56.32 E-value=14 Score=27.46 Aligned_cols=33 Identities=6% Similarity=-0.080 Sum_probs=28.2
Q ss_pred CCCCCCCeEEEeCCCC--chHHHHHHHHhCCCCEE
Q 022234 45 SASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~--~~~~l~~~L~~~G~~v~ 77 (300)
..++.|++|++|..-. ..+++.+.++++|+.|.
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~ 64 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 64 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEee
Confidence 3679999999998874 47899999999999875
No 202
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=56.21 E-value=23 Score=33.82 Aligned_cols=103 Identities=8% Similarity=0.004 Sum_probs=65.1
Q ss_pred CEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeee--------CCCCcHHHHHH--cCCCCEEEEEChHHHHHHHHHhc
Q 022234 178 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP--------VHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNLIS 247 (300)
Q Consensus 178 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~--------~~~~~~~~~~~--l~~~d~IvftS~s~v~~~~~~~~ 247 (300)
++++++++..-...+.+.|.+.|.+|.-+..=.... -+....+.+++ +.+.|.++.+.++-..+++-.+-
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ 428 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDSTNIFLTLA 428 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCchHHHHHHHH
Confidence 789999888888899999999998876655211110 01111233444 36889888877776666654432
Q ss_pred ccC-CCCceEE--EeCHHHHHHHHHcCCCeEEecCC
Q 022234 248 DTE-QWSNSVA--CIGETTASAAKRLGLKNVYYPTH 280 (300)
Q Consensus 248 ~~~-~~~~~vv--~IG~~Ta~~l~~~G~~~~~v~~~ 280 (300)
... ..+.+++ +-.+.-.+.+++.|...++.|+.
T Consensus 429 ak~l~~~~~iiar~~~~~~~~~l~~~G~d~vi~p~~ 464 (565)
T 4gx0_A 429 CRHLHSHIRIVARANGEENVDQLYAAGADFVVSNAS 464 (565)
T ss_dssp HHHHCSSSEEEEEESSTTSHHHHHHHTCSEEEEHHH
T ss_pred HHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEccch
Confidence 211 1233444 45778888999999987665543
No 203
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=56.03 E-value=45 Score=32.83 Aligned_cols=110 Identities=17% Similarity=0.138 Sum_probs=69.3
Q ss_pred CCeEEEeCCCCchHHHHH---------HHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH--------H
Q 022234 50 NPKVVVTRERGKNGKLIK---------ALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE--------A 112 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~---------~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~--------a 112 (300)
..+|++.-...+...+-+ .|+..|++|+.+..-. + .+++.+.....+.|.|...+-. .
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdV--P---pEeIVeAA~EedADVVGLSsLLTt~dihL~~ 676 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSV--P---VEKLVDAAIELKADAILASTIISHDDIHYKN 676 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSB--C---HHHHHHHHHHTTCSEEEEECCCCGGGHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCC--C---HHHHHHHHHHcCCCEEEEeccccCchhhHHH
Confidence 456777766554444444 5899999999988742 1 2344334445688999988533 4
Q ss_pred HHHHHHHHHHcCCC-CceEEEEccc-hHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 113 GSVFLEAWKEAGTP-NVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 113 v~~~~~~l~~~~~~-~~~i~aVG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
++.+.+.+++.+.. ++++++=|.. +.+..++. |....+. +...+..+++.|.
T Consensus 677 MkevIelLrE~GlrDkIkVIVGGa~~tqd~AkeI------GADa~f~-DATeAVeVA~~Ll 730 (763)
T 3kp1_A 677 MKRIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQ------GVDAGFG-RGSKGIHVATFLV 730 (763)
T ss_dssp HHHHHHHHHHTTCTTTSEEEEECTTCCHHHHHTT------TCSEEEC-TTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHc------CCcEEEC-CcchHHHHHHHHH
Confidence 46667778887765 5888888864 44555555 8876443 4445555555554
No 204
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=55.93 E-value=84 Score=27.80 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=78.4
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHHcCCCCc
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKEAGTPNV 128 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~~~~~~ 128 (300)
.++||++++-. ++..+.|++.| ++...+. ..+. +.+++.+ ...++|.++..+..-+ +.+++.+ +++
T Consensus 2 ~~kvlv~~~~~--~~~~~~l~~~~-~v~~~~~--~~~~-~~~~~~~--~~~~~d~~i~~~~~~i~~~~l~~~-----~~L 68 (330)
T 4e5n_A 2 LPKLVITHRVH--EEILQLLAPHC-ELITNQT--DSTL-TREEILR--RCRDAQAMMAFMPDRVDADFLQAC-----PEL 68 (330)
T ss_dssp CCEEEECSCCC--HHHHHHHTTTC-EEECCCS--SSCC-CHHHHHH--HHTTCSEEEECTTCCBCHHHHHHC-----TTC
T ss_pred CCEEEEecCCC--HHHHHHHHhCC-eEEEecC--CCCC-CHHHHHH--HhCCCeEEEEeCCCCCCHHHHhhC-----CCC
Confidence 46899998764 66778888776 4443221 0111 2233333 2468999887544332 2233322 345
Q ss_pred eEEEE-ccch----HHHHHHHhhccCCCccccccCCCCcHHHHHHh-----c--cc-------------C----------
Q 022234 129 RIGVV-GAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L--PK-------------N---------- 173 (300)
Q Consensus 129 ~i~aV-G~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----L--~~-------------~---------- 173 (300)
|+++. |... .+++.+. |+.+...|. .+++..++. | .+ +
T Consensus 69 k~I~~~~~G~d~id~~~~~~~------gI~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 141 (330)
T 4e5n_A 69 RVIGCALKGFDNFDVDACTAR------GVWLTFVPD-LLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGT 141 (330)
T ss_dssp CEEEESSSCCTTBCHHHHHHT------TCEEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCC
T ss_pred cEEEECCCcccccCHHHHHhc------CcEEEeCCC-CCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCC
Confidence 55443 3332 3577888 998877765 333333322 1 00 0
Q ss_pred CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeee
Q 022234 174 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 174 ~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
...|+++.+++-..-...+...|+..|.+| ..|.+
T Consensus 142 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V---~~~d~ 176 (330)
T 4e5n_A 142 GLDNATVGFLGMGAIGLAMADRLQGWGATL---QYHEA 176 (330)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHTTTSCCEE---EEECS
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCEE---EEECC
Confidence 125789999977666677888899888765 45554
No 205
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=55.91 E-value=14 Score=28.80 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=32.7
Q ss_pred EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 258 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 258 ~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
.||+...+.+.+.|++++......+.+..++.+...+....
T Consensus 75 ~iG~~a~~~L~~~GI~v~~~~~~~~i~eal~~l~~~L~~~~ 115 (145)
T 1p90_A 75 SIGGPAAAKVVRAGIHPLKKPKGCAAQEAIAELQTVMAGSP 115 (145)
T ss_dssp BCCHHHHHHHHHTTCEEEECTTCEEHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHhcCCC
Confidence 38999999999999998655456688999988887765443
No 206
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=55.91 E-value=48 Score=23.61 Aligned_cols=110 Identities=7% Similarity=-0.015 Sum_probs=64.2
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC----hHHHHHHHHHHHHc
Q 022234 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS----PEAGSVFLEAWKEA 123 (300)
Q Consensus 49 ~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS----~~av~~~~~~l~~~ 123 (300)
.+++||+.-... ....+...|++.|+++... .+..+..+.+....+|.|++-- .++.+. .+.+++.
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~-~~~l~~~ 72 (127)
T 3i42_A 2 SLQQALIVEDYQAAAETFKELLEMLGFQADYV--------MSGTDALHAMSTRGYDAVFIDLNLPDTSGLAL-VKQLRAL 72 (127)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEE--------SSHHHHHHHHHHSCCSEEEEESBCSSSBHHHH-HHHHHHS
T ss_pred CcceEEEEcCCHHHHHHHHHHHHHcCCCEEEE--------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHhh
Confidence 356899887764 4567888899998754332 2333333444456799888752 344444 4445554
Q ss_pred C-CCCceEEEEccchH---HHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC
Q 022234 124 G-TPNVRIGVVGAGTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 174 (300)
Q Consensus 124 ~-~~~~~i~aVG~~Ta---~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 174 (300)
. ..+.+++++..... ...... |.. ++.....+.+.|.+.+....
T Consensus 73 ~~~~~~~ii~~s~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 73 PMEKTSKFVAVSGFAKNDLGKEACE------LFD-FYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp CCSSCCEEEEEECC-CTTCCHHHHH------HCS-EEEESSCCHHHHHHHHHHHC
T ss_pred hccCCCCEEEEECCcchhHHHHHHH------hhH-HheeCCCCHHHHHHHHHHhh
Confidence 2 34677777654322 122333 533 35666678888888876543
No 207
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=55.81 E-value=46 Score=26.82 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=62.3
Q ss_pred eChHHHHHHHHHHHHcCCC-CceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCC
Q 022234 108 TSPEAGSVFLEAWKEAGTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA 186 (300)
Q Consensus 108 TS~~av~~~~~~l~~~~~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~ 186 (300)
.|+..++...+.+...+.+ ++. +..|.... .+... ..++..+.....+.+ +++.+.+...+|+++++....
T Consensus 85 ~s~~~~~~a~~~~~~~g~~~~v~-~~~~d~~~-~~~~~-----~~~D~v~~~~~~~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 85 PRADRIENIQKNIDTYGLSPRMR-AVQGTAPA-ALADL-----PLPEAVFIGGGGSQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTEE-EEESCTTG-GGTTS-----CCCSEEEECSCCCHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHcCCCCCEE-EEeCchhh-hcccC-----CCCCEEEECCcccHH-HHHHHHHhcCCCcEEEEEecC
Confidence 3566677666666666655 343 44555432 12211 144544443333455 667776666677887776543
Q ss_pred -CChhHHHHHHHhCCCeeEEEEeeeeeeCCC
Q 022234 187 -KASNEIEEGLSNRGFEVVRLNTYTTEPVHH 216 (300)
Q Consensus 187 -~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~ 216 (300)
.....+.+.|++.|+++..+.+++..+...
T Consensus 157 ~~~~~~~~~~l~~~g~~i~~i~~~~~~~~~~ 187 (204)
T 3njr_A 157 LESETLLTQLHARHGGQLLRIDIAQAEPLGR 187 (204)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEEEEEEEETT
T ss_pred cccHHHHHHHHHhCCCcEEEEEeecccccCc
Confidence 445677788999999999999988876654
No 208
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=55.35 E-value=1e+02 Score=26.73 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=76.9
Q ss_pred cCCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccc--cccCCCC-cHHHHHHhcccCC
Q 022234 99 DTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSKA-TGKILASELPKNG 174 (300)
Q Consensus 99 ~~~~d~ivFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~--~~~p~~~-~~e~L~~~L~~~~ 174 (300)
....+.||-. +..........+.+. +++++..+..+ ..+... . .... .+.+... .+..+++.+.+.
T Consensus 69 ~~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~-~~~~~~---~--~~~~~f~~~~~~~~~~~~~~~~l~~~- 138 (375)
T 3i09_A 69 RGGLDLLVGGTNSATALSMNQVAAEK---KKVYINIGAGA-DTLTNE---Q--CTPYTVHYAYDTMALAKGTGSAVVKQ- 138 (375)
T ss_dssp HSCEEEEEECSCHHHHHHHHHHHHHH---TCEEEECSCCC-GGGGTT---T--CCTTEEECSCCHHHHHHHHHHHHHHT-
T ss_pred hCCCEEEECCCCcHHHHHHHHHHHHc---CceEEEeCCCc-hhhhcc---c--CCCcEEEeeCChHHHHHHHHHHHHHc-
Confidence 3678888854 444455555555543 46777765443 222221 0 1111 1233321 245666666654
Q ss_pred CCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC-hHHHHHHHHHh
Q 022234 175 KKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLI 246 (300)
Q Consensus 175 ~~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS-~s~v~~~~~~~ 246 (300)
..+++.++..+.. .+.+.+.|++.|..+.....|.... .+....+..+ .++|+|++.+ ...+..+++.+
T Consensus 139 -g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~ 215 (375)
T 3i09_A 139 -GGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSA--SDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAA 215 (375)
T ss_dssp -TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--SCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHH
T ss_pred -CCceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCC--ccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHH
Confidence 4578888865542 4567788999998876655554321 2222233333 4789886654 44666777777
Q ss_pred cccC
Q 022234 247 SDTE 250 (300)
Q Consensus 247 ~~~~ 250 (300)
.+.+
T Consensus 216 ~~~g 219 (375)
T 3i09_A 216 KEFG 219 (375)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6654
No 209
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=55.27 E-value=37 Score=30.41 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=56.3
Q ss_pred CCCeEEEeCCCCc-----hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC--hHHHHHHHHHHH
Q 022234 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS--PEAGSVFLEAWK 121 (300)
Q Consensus 49 ~g~~VlitR~~~~-----~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS--~~av~~~~~~l~ 121 (300)
..++|.+..+... .+.+.+.+++.|+++...-.+... ..|.......+...+.|.|++++ +.....|+.++.
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~-~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~ 241 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP-VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFM 241 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS-CSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC-CccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHH
Confidence 4578887776542 346677778889988754433322 12444333334456899999874 466777888888
Q ss_pred HcCCCCceEEE-EccchHHHHHH
Q 022234 122 EAGTPNVRIGV-VGAGTASIFEE 143 (300)
Q Consensus 122 ~~~~~~~~i~a-VG~~Ta~~L~~ 143 (300)
+.+. +.+++. -|..+.+.++.
T Consensus 242 ~~g~-~~~~~~~~~~~~~~~~~~ 263 (419)
T 3h5l_A 242 TDPT-NSLVYLQYGASLAAFRDI 263 (419)
T ss_dssp TSCC-SCEEEECSGGGSHHHHHH
T ss_pred HcCC-CceEEecCCCCcHHHHHh
Confidence 8777 444443 34444444444
No 210
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=55.23 E-value=96 Score=26.23 Aligned_cols=94 Identities=6% Similarity=0.026 Sum_probs=52.6
Q ss_pred EEEEEc--CCCChhHHHHHHHhC-CCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEE-EEChHHHHHHHHHhcccCCCCc
Q 022234 179 TVLYPA--SAKASNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA-VASPSAVRSWVNLISDTEQWSN 254 (300)
Q Consensus 179 ~vL~~r--g~~~~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~Iv-ftS~s~v~~~~~~~~~~~~~~~ 254 (300)
||.+.. |.-++. +.+.+.+. |+++ +.++++ ..+.++++. .++|+++ ||+|.++...+..+.+. ++
T Consensus 2 kV~V~Ga~G~mG~~-i~~~~~~~~~~el--va~~d~---~~dl~~~~~--~~~DvvIDfT~p~a~~~~~~~a~~~---g~ 70 (245)
T 1p9l_A 2 RVGVLGAKGKVGTT-MVRAVAAADDLTL--SAELDA---GDPLSLLTD--GNTEVVIDFTHPDVVMGNLEFLIDN---GI 70 (245)
T ss_dssp EEEEETTTSHHHHH-HHHHHHHCTTCEE--EEEECT---TCCTHHHHH--TTCCEEEECSCTTTHHHHHHHHHHT---TC
T ss_pred EEEEECCCCHHHHH-HHHHHHhCCCCEE--EEEEcc---CCCHHHHhc--cCCcEEEEccChHHHHHHHHHHHHc---CC
Confidence 566665 333444 45555544 6555 344443 222333332 3789988 99999998887766553 44
Q ss_pred eEEE----eCHHHHHHHHHc-----CCCeEEecCCCCHH
Q 022234 255 SVAC----IGETTASAAKRL-----GLKNVYYPTHPGLE 284 (300)
Q Consensus 255 ~vv~----IG~~Ta~~l~~~-----G~~~~~v~~~p~~~ 284 (300)
++++ ..+.-.+.+++. +... +++.+.+..
T Consensus 71 ~~VigTTG~~~e~~~~l~~aa~~~~~~~v-v~a~N~siG 108 (245)
T 1p9l_A 71 HAVVGTTGFTAERFQQVESWLVAKPNTSV-LIAPNFAIG 108 (245)
T ss_dssp EEEECCCCCCHHHHHHHHHHHHTSTTCEE-EECSCCCHH
T ss_pred CEEEcCCCCCHHHHHHHHHHHHhCCCCCE-EEECCccHH
Confidence 5544 344434444443 5544 567766664
No 211
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=55.20 E-value=53 Score=23.24 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=64.0
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHHhcccC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDTE 250 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS----~s~v~~~~~~~~~~~ 250 (300)
.++|++..+.. +..+...|+..|+.+.. .. ...+.++.+ ..+|.|+.-- .++.+ ++..+....
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~---~~------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~-~~~~l~~~~ 72 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVE---AE------DYDSAVNQLNEPWPDLILLAWMLPGGSGIQ-FIKHLRRES 72 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE---EC------SHHHHHTTCSSSCCSEEEEESEETTEEHHH-HHHHHHTST
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEE---eC------CHHHHHHHHhccCCCEEEEecCCCCCCHHH-HHHHHHhCc
Confidence 47888776654 66788888888865432 11 122233333 3578777531 23333 444454332
Q ss_pred -CCCceEEEeCHHH----HHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccCC
Q 022234 251 -QWSNSVACIGETT----ASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 299 (300)
Q Consensus 251 -~~~~~vv~IG~~T----a~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~~ 299 (300)
..+.+++.++... ...+.+.|.. .++....+.+.+.+.+...++..+|
T Consensus 73 ~~~~~~ii~~s~~~~~~~~~~~~~~ga~-~~l~Kp~~~~~l~~~i~~~~~~~~~ 125 (127)
T 2jba_A 73 MTRDIPVVMLTARGEEEDRVRGLETGAD-DCITKPFSPKELVARIKAVMRRISP 125 (127)
T ss_dssp TTTTSCEEEEEETTHHHHHHTTCCCSCS-EEEEESCCHHHHHHHHHHHHHCCCC
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHhcCCC-eEEeCCCCHHHHHHHHHHHHhcccC
Confidence 1356666664332 2222335665 3666777999999999988876655
No 212
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=55.16 E-value=5.9 Score=33.42 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=44.9
Q ss_pred CEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeeeeCCCC------------------------------cH
Q 022234 178 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV------------------------------DQ 219 (300)
Q Consensus 178 ~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~------------------------------~~ 219 (300)
.+||++-|-.. .+.+.+.|++.|.+|+.+.+|+....+.. .+
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d 81 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLAS 81 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCH
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcH
Confidence 56777755433 23466777888999999999985321110 11
Q ss_pred H---HHHHcCCCCEEEEECh-------HHHHHHHHHhc
Q 022234 220 T---VLKQALSIPVVAVASP-------SAVRSWVNLIS 247 (300)
Q Consensus 220 ~---~~~~l~~~d~IvftS~-------s~v~~~~~~~~ 247 (300)
+ ..+.+...|.|||.+| ..++.|++.+-
T Consensus 82 d~~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 119 (228)
T 3tem_A 82 DITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL 119 (228)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCEEEEECChhhcccCHHHHHHHHHHh
Confidence 1 2223457899999886 67899998763
No 213
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=54.99 E-value=21 Score=28.87 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=39.0
Q ss_pred HHHHHHHhCC--CeeEEEEee--eeeeCCCCc-----------------------------HHHHHHcCCCCEEEEEC--
Q 022234 191 EIEEGLSNRG--FEVVRLNTY--TTEPVHHVD-----------------------------QTVLKQALSIPVVAVAS-- 235 (300)
Q Consensus 191 ~L~~~L~~~G--~~v~~~~vY--~~~~~~~~~-----------------------------~~~~~~l~~~d~IvftS-- 235 (300)
.+.+.|++.| .+|+.+.+| +........ .++.+.+...|.|||.|
T Consensus 25 ~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iv~~~P~ 104 (208)
T 2hpv_A 25 TFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANPM 104 (208)
T ss_dssp HHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEEEEEecc
Confidence 5667788776 899999998 654222110 11233345789999999
Q ss_pred -----hHHHHHHHHHhc
Q 022234 236 -----PSAVRSWVNLIS 247 (300)
Q Consensus 236 -----~s~v~~~~~~~~ 247 (300)
|..++.|++.+.
T Consensus 105 y~~~~pa~lK~~iD~~~ 121 (208)
T 2hpv_A 105 WNLNVPTRLKAWVDTIN 121 (208)
T ss_dssp BTTBCCHHHHHHHHHHC
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 678999999864
No 214
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=54.84 E-value=16 Score=29.89 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=46.1
Q ss_pred CEEEEEcCCCCh----hH----HHH----HHHhC--CCeeEEEEeeeeeeC-------CCCc---HHHHHHcCCCCEEEE
Q 022234 178 CTVLYPASAKAS----NE----IEE----GLSNR--GFEVVRLNTYTTEPV-------HHVD---QTVLKQALSIPVVAV 233 (300)
Q Consensus 178 ~~vL~~rg~~~~----~~----L~~----~L~~~--G~~v~~~~vY~~~~~-------~~~~---~~~~~~l~~~d~Ivf 233 (300)
+||+++.|.... .. +.+ .|++. |++++.+.+++.... .... .++.+.+...|.|||
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 577777665432 22 233 34444 778887777665321 1111 234444568899999
Q ss_pred ECh-------HHHHHHHHHhcccCCCCceE
Q 022234 234 ASP-------SAVRSWVNLISDTEQWSNSV 256 (300)
Q Consensus 234 tS~-------s~v~~~~~~~~~~~~~~~~v 256 (300)
.|| ..+++|++.+....+.+.++
T Consensus 92 ~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~ 121 (191)
T 3k1y_A 92 ATPVFKASYTGLFKMFFDILDTDALTGMPT 121 (191)
T ss_dssp EEECBTTBSCHHHHHHHHHSCTTTTTTCEE
T ss_pred EcCccCCcCcHHHHHHHHHhhhhhcCCCEE
Confidence 986 57899999876432334443
No 215
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=54.82 E-value=1e+02 Score=26.48 Aligned_cols=174 Identities=10% Similarity=0.015 Sum_probs=86.1
Q ss_pred CccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccc-------------hHHHHHHHhhccCCCccc-----cccCC---
Q 022234 101 IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-------------TASIFEEVIQSSKCSLDV-----AFSPS--- 159 (300)
Q Consensus 101 ~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~-------------Ta~~L~~~~~~~~~G~~~-----~~~p~--- 159 (300)
..|.+++.|....+.+.+.+ +.+..++.++... ....+++.+ |+.. .++..
T Consensus 136 ~~d~ii~~s~~~~~~~~~~~---~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~G~~~~ 207 (374)
T 2iw1_A 136 KSTKLMMLTDKQIADFQKHY---QTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKN-----GIKEQQNLLLQVGSDFG 207 (374)
T ss_dssp CCCEEEESCHHHHHHHHHHH---CCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHT-----TCCTTCEEEEEECSCTT
T ss_pred CCcEEEEcCHHHHHHHHHHh---CCChhheEEecCCcCHHhcCcccchhHHHHHHHHh-----CCCCCCeEEEEeccchh
Confidence 57889999988887776543 2222334444321 112333332 4321 11221
Q ss_pred CCcHHHHHHhcccCCCC---CCEEEEEcCCCChhHHHHHHHhCCC--eeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEE
Q 022234 160 KATGKILASELPKNGKK---KCTVLYPASAKASNEIEEGLSNRGF--EVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 234 (300)
Q Consensus 160 ~~~~e~L~~~L~~~~~~---~~~vL~~rg~~~~~~L~~~L~~~G~--~v~~~~vY~~~~~~~~~~~~~~~l~~~d~Ivft 234 (300)
.-+.+.|++.+...... +-+++++ |....+.+.+..++.|. +|..+. | ... +.+.+...|+++++
T Consensus 208 ~K~~~~li~a~~~l~~~~~~~~~l~i~-G~g~~~~~~~~~~~~~~~~~v~~~g-~-----~~~---~~~~~~~ad~~v~p 277 (374)
T 2iw1_A 208 RKGVDRSIEALASLPESLRHNTLLFVV-GQDKPRKFEALAEKLGVRSNVHFFS-G-----RND---VSELMAAADLLLHP 277 (374)
T ss_dssp TTTHHHHHHHHHTSCHHHHHTEEEEEE-SSSCCHHHHHHHHHHTCGGGEEEES-C-----CSC---HHHHHHHCSEEEEC
T ss_pred hcCHHHHHHHHHHhHhccCCceEEEEE-cCCCHHHHHHHHHHcCCCCcEEECC-C-----ccc---HHHHHHhcCEEEec
Confidence 22455666666544211 1244444 44445667766666553 232222 1 122 22223467888887
Q ss_pred ChHH--HHHHHHHhcccCCCCceEEEeCH-HHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 235 SPSA--VRSWVNLISDTEQWSNSVACIGE-TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 235 S~s~--v~~~~~~~~~~~~~~~~vv~IG~-~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
|... =-.+++.+. .++++++... ...+.+.+.+ .-.++++..+.++++++|.+.+..+
T Consensus 278 s~~e~~~~~~~Ea~a----~G~Pvi~~~~~~~~e~i~~~~-~g~~~~~~~~~~~l~~~i~~l~~~~ 338 (374)
T 2iw1_A 278 AYQEAAGIVLLEAIT----AGLPVLTTAVCGYAHYIADAN-CGTVIAEPFSQEQLNEVLRKALTQS 338 (374)
T ss_dssp CSCCSSCHHHHHHHH----HTCCEEEETTSTTTHHHHHHT-CEEEECSSCCHHHHHHHHHHHHHCH
T ss_pred cccCCcccHHHHHHH----CCCCEEEecCCCchhhhccCC-ceEEeCCCCCHHHHHHHHHHHHcCh
Confidence 7210 001122221 2567777542 3445555433 2234444458999999999887643
No 216
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=54.76 E-value=55 Score=28.34 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=49.3
Q ss_pred ccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeee------Eee--eCCCchhHHHhhhcCCccEEEEeCh---
Q 022234 43 SASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLI------QHA--QGPDTDRLSSVLNDTIFDWIIITSP--- 110 (300)
Q Consensus 43 ~~~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i------~~~--~~~~~~~l~~~l~~~~~d~ivFTS~--- 110 (300)
..+..+.+|+||||...+ -...+++.|.+.|++|+.+--- +.. ...+.+.+.+.+ ...|.||.+-.
T Consensus 12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~vih~A~~~~ 89 (347)
T 4id9_A 12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAI--MGVSAVLHLGAFMS 89 (347)
T ss_dssp ---------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHH--TTCSEEEECCCCCC
T ss_pred CcccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHH--hCCCEEEECCcccC
Confidence 355778899999999865 3568999999999999876321 111 122334444443 47899986542
Q ss_pred --------------HHHHHHHHHHHHcCCCCceEEEEcc
Q 022234 111 --------------EAGSVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 111 --------------~av~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
.+...+++.+.+.+. .+++.++.
T Consensus 90 ~~~~~~~~~~~~nv~~~~~ll~a~~~~~~--~~~V~~SS 126 (347)
T 4id9_A 90 WAPADRDRMFAVNVEGTRRLLDAASAAGV--RRFVFASS 126 (347)
T ss_dssp SSGGGHHHHHHHHTHHHHHHHHHHHHTTC--SEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHcCC--CeEEEECC
Confidence 234556666655432 35666655
No 217
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=54.73 E-value=14 Score=27.53 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-------H--HHHHHHHHHHcCCCCceEEEE
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-------A--GSVFLEAWKEAGTPNVRIGVV 133 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-------a--v~~~~~~l~~~~~~~~~i~aV 133 (300)
+.+++.+++.|+++..+++-+. +.+ .+..+|.|||-||. . ++.|++.+.. .+.+.+++++
T Consensus 18 ~~i~~~l~~~g~~v~~~~~~~~----~~~------~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-~l~~k~~~~~ 86 (137)
T 2fz5_A 18 NEIEAAVKAAGADVESVRFEDT----NVD------DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-KLKGKKVGLF 86 (137)
T ss_dssp HHHHHHHHHTTCCEEEEETTSC----CHH------HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-GCSSCEEEEE
T ss_pred HHHHHHHHhCCCeEEEEEcccC----CHH------HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-hcCCCEEEEE
Confidence 3455566677888765543111 111 23579999998876 2 7888887643 3456777777
Q ss_pred c
Q 022234 134 G 134 (300)
Q Consensus 134 G 134 (300)
|
T Consensus 87 ~ 87 (137)
T 2fz5_A 87 G 87 (137)
T ss_dssp E
T ss_pred E
Confidence 7
No 218
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=54.45 E-value=56 Score=23.29 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--C-CCCEEEEEC-----hHHHHHHHHHhc
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--L-SIPVVAVAS-----PSAVRSWVNLIS 247 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~-~~d~IvftS-----~s~v~~~~~~~~ 247 (300)
..+||++..+.. +..+...|...|+.|.. +. ...+.++.+ . .+|+|++-- ..+.+ ++..+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~-~~~~l~ 74 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTA---VS------SGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQ-VARVAR 74 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHTTCCCCEEEEESCCSSSSCHHH-HHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEE---EC------CHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHH-HHHHHH
Confidence 358888877654 66788889888875531 11 122223222 3 688887641 23333 444444
Q ss_pred ccCCCCceEEEeCHHHHHHHHHcCCCe-EEecCCCCHHHHHHHHHHHHHccCC
Q 022234 248 DTEQWSNSVACIGETTASAAKRLGLKN-VYYPTHPGLEGWVDSILEALREHGH 299 (300)
Q Consensus 248 ~~~~~~~~vv~IG~~Ta~~l~~~G~~~-~~v~~~p~~~~l~~ai~~~~~~~~~ 299 (300)
... .+.+++.++..........++.. .++....+.+.|.+.|.+.+....+
T Consensus 75 ~~~-~~~~ii~~s~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 75 EID-PNMPIVYISGHAALEWASNGVPDSIILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp HHC-TTCCEEEEESSCCTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred hcC-CCCCEEEEeCCccHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 332 35666666432222222223321 3666767999999999988876543
No 219
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=54.42 E-value=7.7 Score=30.87 Aligned_cols=82 Identities=21% Similarity=0.277 Sum_probs=50.5
Q ss_pred chHHHHHHHHhCCCCEEEeeeeEeeeC---CCch-hH-HHhhh-cCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEE
Q 022234 61 KNGKLIKALAKHRIDCLELPLIQHAQG---PDTD-RL-SSVLN-DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVV 133 (300)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~i~~~~~---~~~~-~l-~~~l~-~~~~d~ivFTS~~a-v~~~~~~l~~~~~~~~~i~aV 133 (300)
....+.+.|+..|+++...|+.+.... .+.+ .+ -..+. ...+|.+|+.|.-+ ...+.+.+++. -+.++..+
T Consensus 62 ~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv~~lr~~--~G~~V~v~ 139 (165)
T 2qip_A 62 KQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQR--YNKKVTVY 139 (165)
T ss_dssp HHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHH--HCCEEEEE
T ss_pred hHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHHHHHHHH--cCcEEEEE
Confidence 346788999999999999998754321 1222 11 12221 35788888888755 34444455552 04677777
Q ss_pred cc--chHHHHHHH
Q 022234 134 GA--GTASIFEEV 144 (300)
Q Consensus 134 G~--~Ta~~L~~~ 144 (300)
|. .|...|++.
T Consensus 140 g~~~~~s~~L~~~ 152 (165)
T 2qip_A 140 GVPRLTSQTLIDC 152 (165)
T ss_dssp ECGGGSCHHHHHH
T ss_pred eCCCcChHHHHHh
Confidence 74 367778776
No 220
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=54.10 E-value=27 Score=30.38 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=29.5
Q ss_pred cccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 42 TSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 42 ~~~~~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
+.-..++.||+||||...+. ...+++.|.+.|++|+.+
T Consensus 12 ~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~ 50 (330)
T 2pzm_A 12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVI 50 (330)
T ss_dssp --CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEE
T ss_pred cCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 44557899999999988653 468899999999988764
No 221
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=54.06 E-value=55 Score=26.68 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=64.4
Q ss_pred CCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHHH
Q 022234 177 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWVN 244 (300)
Q Consensus 177 ~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-----s~v~~~~~ 244 (300)
.+++++.+... +...+...|+.+|++|..+-. ..+.+++.+.. .++|+|.+++. ..++.+.+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~------~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~ 161 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV------DIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTID 161 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS------SBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHH
Confidence 45788776653 456778889999988865543 12233333333 38899888874 23555666
Q ss_pred HhcccCC-CCceEEEeCHHHHH-HHHHcCCCeEEecCCCCHHHHHHHHHHH
Q 022234 245 LISDTEQ-WSNSVACIGETTAS-AAKRLGLKNVYYPTHPGLEGWVDSILEA 293 (300)
Q Consensus 245 ~~~~~~~-~~~~vv~IG~~Ta~-~l~~~G~~~~~v~~~p~~~~l~~ai~~~ 293 (300)
.+++.+. .++++++-|+.... .+++.|... .+ ++....++.+.+.
T Consensus 162 ~l~~~~~~~~~~v~vGG~~~~~~~~~~~gad~--~~--~da~~av~~~~~l 208 (210)
T 1y80_A 162 ALIAAGLRDRVKVIVGGAPLSQDFADEIGADG--YA--PDAASATELCRQL 208 (210)
T ss_dssp HHHHTTCGGGCEEEEESTTCCHHHHHHHTCSE--EC--SSHHHHHHHHHHH
T ss_pred HHHhcCCCCCCeEEEECCCCCHHHHHHcCCeE--EE--CCHHHHHHHHHHH
Confidence 6655432 25888888876544 345667643 33 3555555555543
No 222
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=53.99 E-value=59 Score=23.44 Aligned_cols=107 Identities=12% Similarity=0.027 Sum_probs=65.1
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh----HHHHHHHHHhcccC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSWVNLISDTE 250 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~----s~v~~~~~~~~~~~ 250 (300)
-+||++..+.. +..|.+.|+..|+.|.... ...+.++.+ ..+|+|++--. .+. .++..+....
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~---------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~-~~~~~l~~~~ 77 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAG---------DGEEGERLFGLHAPDVIITDIRMPKLGGL-EMLDRIKAGG 77 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEES---------SHHHHHHHHHHHCCSEEEECSSCSSSCHH-HHHHHHHHTT
T ss_pred cEEEEEeCCHHHHHHHHHHHHhcCcEEEEEC---------CHHHHHHHHhccCCCEEEEeCCCCCCCHH-HHHHHHHhcC
Confidence 47888887764 6678888888765442211 122223222 36787777521 233 3444444332
Q ss_pred CCCceEEEeCH----HHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 251 QWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 251 ~~~~~vv~IG~----~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
.+.++++++. .....+.+.|..- ++....+.+.|.+.|.+.++.
T Consensus 78 -~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 78 -AKPYVIVISAFSEMKYFIKAIELGVHL-FLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp -CCCEEEECCCCCCHHHHHHHHHHCCSE-ECCSSCCHHHHHHHHHHHHHH
T ss_pred -CCCcEEEEecCcChHHHHHHHhCCcce-eEcCCCCHHHHHHHHHHHHHH
Confidence 4667777653 3555666789874 667767999999999887753
No 223
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=53.99 E-value=97 Score=25.95 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=26.5
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 47 ~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
.+.|++||||..... ...+++.|.+.|++|+.+
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~ 62 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGC 62 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 367899999987653 468899999999987754
No 224
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=53.77 E-value=45 Score=28.06 Aligned_cols=84 Identities=12% Similarity=-0.026 Sum_probs=51.4
Q ss_pred CCCCCeEEEeCCC---CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEE----EeChHHHHHHHH
Q 022234 47 SNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWII----ITSPEAGSVFLE 118 (300)
Q Consensus 47 ~l~g~~VlitR~~---~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~iv----FTS~~av~~~~~ 118 (300)
.|.||++|||... +=...+++.|.+.|++|+..-. -+ ...+++.+.+ ..+..+... .|+..+++.+++
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r--~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYR--KE--RSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEES--SG--GGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEEC--CH--HHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHH
Confidence 5789999999854 3457899999999999876432 11 1123343334 233333333 378899988887
Q ss_pred HHHHc-CCCCceEEEEc
Q 022234 119 AWKEA-GTPNVRIGVVG 134 (300)
Q Consensus 119 ~l~~~-~~~~~~i~aVG 134 (300)
...+. +.-+.-+...|
T Consensus 79 ~~~~~~G~iD~lvnnAg 95 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSIA 95 (256)
T ss_dssp HHHHHHCCCSEEEECCC
T ss_pred HHHHHhCCCCEEEeccc
Confidence 76543 43344444444
No 225
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=53.26 E-value=23 Score=30.18 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=32.5
Q ss_pred CCCCCccccccccccc--cCCCCCCCeEEEeCCC----CchHH----HHHHHHhCCCCEEEeeeeE
Q 022234 28 LPFQFSRIQASSDATS--ASASNSNPKVVVTRER----GKNGK----LIKALAKHRIDCLELPLIQ 83 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~--~~~~l~g~~VlitR~~----~~~~~----l~~~L~~~G~~v~~~P~i~ 83 (300)
|+....|.-.++++.. +..+...++||+.-.. ..+.. +.+.+++.|+++..+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~ 75 (247)
T 2q62_A 10 LPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSG 75 (247)
T ss_dssp CTTSCTTTCCCCCGGGGCCCCCCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTT
T ss_pred CchhhhhcCCCCChhhhhhhccCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhc
Confidence 5555566666554443 3455566788765322 33334 4455566798887776644
No 226
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=53.22 E-value=24 Score=29.52 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=36.8
Q ss_pred CeEEEeCCC--CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 51 PKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 51 ~~VlitR~~--~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
|+|++.+.. +....+...|+++|+++..+.+..-.+.++ ...++|.||++-.
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~--------~~~~~d~lii~GG 54 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK--------DIDDFDMLILMGG 54 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS--------CGGGCSEEEECCC
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC--------CccccCEEEECCC
Confidence 467766554 345788999999999998887766544332 1347899999853
No 227
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=53.18 E-value=1.1e+02 Score=26.37 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=113.8
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeee------EeeeCCCchhHHHhhhcCCccEEE-EeChHHHHHHHHHHH
Q 022234 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLI------QHAQGPDTDRLSSVLNDTIFDWII-ITSPEAGSVFLEAWK 121 (300)
Q Consensus 50 g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i------~~~~~~~~~~l~~~l~~~~~d~iv-FTS~~av~~~~~~l~ 121 (300)
..+|+|..-.. ......+.+.+.|++++ .|+- ++...+-+..+.+.......|.++ ||.+..+......+.
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V-~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~~ea~ 85 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAI 85 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEE-EEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHH
Confidence 46788887633 34567777777887743 2221 110001112233333222567655 677777777776666
Q ss_pred HcCCCCceEEEE---ccch------HHHHHHHhhccCCCccccccCCCC---cH-HHHHHhcccCCCCCCEEEEEcC-CC
Q 022234 122 EAGTPNVRIGVV---GAGT------ASIFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYPAS-AK 187 (300)
Q Consensus 122 ~~~~~~~~i~aV---G~~T------a~~L~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~L~~~~~~~~~vL~~rg-~~ 187 (300)
+.+ ++++++ |-.. .+.+++. |+.. +.|... +. ..+...++......++|-++.- ..
T Consensus 86 ~~G---i~~iVi~t~G~~~~~~~~l~~~A~~~------gv~l-iGPNc~Gi~~p~~~~~~~~~~~~~~~G~i~~vsqSG~ 155 (288)
T 2nu8_A 86 DAG---IKLIITITEGIPTLDMLTVKVKLDEA------GVRM-IGPNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGT 155 (288)
T ss_dssp HTT---CSEEEECCCCCCHHHHHHHHHHHHHH------TCEE-ECSSCCEEEETTTEEEESSCTTSCCEEEEEEEESCHH
T ss_pred HCC---CCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EecCCcceecCCcceeEecccCCCCCCCEEEEECcHH
Confidence 654 444443 3222 2344455 7653 334320 10 1111112222223356766643 22
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeC-CCCcHHHHHHc---CCCCEEEEEChH------HHHHHHHHhcccCCCCceEE
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASPS------AVRSWVNLISDTEQWSNSVA 257 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~l---~~~d~IvftS~s------~v~~~~~~~~~~~~~~~~vv 257 (300)
-...+.+.+..+|+-+..+.-.-.... ..+..++++.+ .+-++|+++.-. -++.|++. . .+.+++
T Consensus 156 l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~~~~~~~~~~~~~-~----~~KPVv 230 (288)
T 2nu8_A 156 LTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKE-H----VTKPVV 230 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHHHHHH-H----CCSCEE
T ss_pred HHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHh-c----CCCCEE
Confidence 245677778888988887776666543 23334555544 245677777542 34556664 1 122333
Q ss_pred E--eCHH-----------------------HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHH
Q 022234 258 C--IGET-----------------------TASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 294 (300)
Q Consensus 258 ~--IG~~-----------------------Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~ 294 (300)
+ .|.+ -..++++.|+.+ . .++++|.+.+++.+
T Consensus 231 ~~k~G~~~~~g~~~~Htga~~~~~~g~~~~~~aa~~~aGv~~---~--~~~~el~~~~~~~~ 287 (288)
T 2nu8_A 231 GYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKT---V--RSLADIGEALKTVL 287 (288)
T ss_dssp EEEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHTTCEE---C--SSGGGHHHHHHHHC
T ss_pred EEEeCCCCcccccccchhhhhccCCccHHHHHHHHHHCCCeE---e--CCHHHHHHHHHHHh
Confidence 2 2332 244677778643 2 36677777777654
No 228
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=53.01 E-value=20 Score=26.83 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=28.0
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEE
Q 022234 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~ 77 (300)
..+|.|++|++|..-. ..+++.+.++++|+.+.
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLT 41 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEc
Confidence 4679999999998765 46899999999999874
No 229
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=53.01 E-value=65 Score=29.53 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=62.2
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeee------------EeeeCC--CchhHHHhhhcCCccEEEEeChHHHHH
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGP--DTDRLSSVLNDTIFDWIIITSPEAGSV 115 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i------------~~~~~~--~~~~l~~~l~~~~~d~ivFTS~~av~~ 115 (300)
+++|+|..-..-...+++.|.+.|++++.+-.= .+...+ +.+.+. .......|.||.+..+....
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~-~agi~~A~~viv~~~~~~~n 82 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLE-SAGAAKAEVLINAIDDPQTN 82 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHH-HTTTTTCSEEEECCSSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHH-hcCCCccCEEEECCCChHHH
Confidence 467888887666788899999999887765421 111111 212222 22457899999988775544
Q ss_pred H--HHHHHHcCCCCceEEEE--ccchHHHHHHHhhccCCCccccccCC
Q 022234 116 F--LEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPS 159 (300)
Q Consensus 116 ~--~~~l~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~p~ 159 (300)
. ...+++.+ .+.+|++. .+.-...|++. |.+..+.|.
T Consensus 83 ~~i~~~ar~~~-p~~~Iiara~~~~~~~~L~~~------Gad~Vi~~~ 123 (413)
T 3l9w_A 83 LQLTEMVKEHF-PHLQIIARARDVDHYIRLRQA------GVEKPERET 123 (413)
T ss_dssp HHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHT------TCSSCEETT
T ss_pred HHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHC------CCCEEECcc
Confidence 3 33344444 34566654 56667788887 887655443
No 230
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=52.94 E-value=97 Score=27.29 Aligned_cols=175 Identities=11% Similarity=-0.012 Sum_probs=88.2
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccc-----------------hHHHHHHHhhccCCCccc----cccC
Q 022234 100 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-----------------TASIFEEVIQSSKCSLDV----AFSP 158 (300)
Q Consensus 100 ~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~-----------------Ta~~L~~~~~~~~~G~~~----~~~p 158 (300)
...|.|++.|....+.....+.. ...++.+|... ....+++.+ |+.. .++.
T Consensus 187 ~~ad~ii~~S~~~~~~~~~~~~~---~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~G 258 (439)
T 3fro_A 187 YIADIVTTVSRGYLIDEWGFFRN---FEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKF-----GMDEGVTFMFIG 258 (439)
T ss_dssp HHCSEEEESCHHHHHHTHHHHGG---GTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHH-----TCCSCEEEEEEC
T ss_pred hhccEEEecCHHHHHHHhhhhhh---cCCceeecCCCCCchhcCcccccchhhhhHHHHHHHc-----CCCCCcEEEEEc
Confidence 45799999999888774432211 12334444321 234444443 4322 1222
Q ss_pred C----CCcHHHHHHhcccCCC----CCCEEEEEcCCCCh--hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCC
Q 022234 159 S----KATGKILASELPKNGK----KKCTVLYPASAKAS--NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSI 228 (300)
Q Consensus 159 ~----~~~~e~L~~~L~~~~~----~~~~vL~~rg~~~~--~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~ 228 (300)
. .-+.+.|++.+..... ++-++++++..... +.+.+..++.| ++.. +.- ....+++...+...
T Consensus 259 ~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~---~~g---~~~~~~~~~~~~~a 331 (439)
T 3fro_A 259 RFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKV---ITE---MLSREFVRELYGSV 331 (439)
T ss_dssp CSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEE---ECS---CCCHHHHHHHHTTC
T ss_pred ccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEE---EcC---CCCHHHHHHHHHHC
Confidence 1 2245667766654332 23355555544333 55666666666 3321 111 01223344445788
Q ss_pred CEEEEEChHHH--HHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 229 PVVAVASPSAV--RSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 229 d~IvftS~s~v--~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
|+++++|...- -.+++.+. .++++++........+-+.| .-.+ .+..+.++++++|.+.+.
T Consensus 332 dv~v~ps~~e~~~~~~~EAma----~G~Pvi~s~~~~~~e~~~~~-~g~~-~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 332 DFVIIPSYFEPFGLVALEAMC----LGAIPIASAVGGLRDIITNE-TGIL-VKAGDPGELANAILKALE 394 (439)
T ss_dssp SEEEECBSCCSSCHHHHHHHH----TTCEEEEESSTHHHHHCCTT-TCEE-ECTTCHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCccHHHHHHHH----CCCCeEEcCCCCcceeEEcC-ceEE-eCCCCHHHHHHHHHHHHh
Confidence 99999984310 00122221 25677765332222232234 3323 344589999999999887
No 231
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=52.91 E-value=95 Score=29.26 Aligned_cols=194 Identities=14% Similarity=0.093 Sum_probs=98.5
Q ss_pred chHHHHHHHHhCCCCEEE-eeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEc-cch
Q 022234 61 KNGKLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-AGT 137 (300)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~-~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~-~~~~~~~i~aVG-~~T 137 (300)
+..++.+.|++.|+++.. +|.- ...+++. +.++.+.-+..++..-....+.|++ .+.+-+...-+| ..|
T Consensus 184 D~~eik~lL~~~Gi~v~~~~~gg-----~~~~ei~---~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~PiG~~~T 255 (511)
T 2xdq_B 184 DCRELKQLMADLGIQVNLVIPAA-----ATVHDLQ---RLPQAWFNLVPYREIGGLTAQYLEREFGQPSVRITPMGVVET 255 (511)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETT-----CCTTTGG---GGGGSSEEECCCTTSSHHHHHHHHHHHCCCEECCCCCSHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEECCc-----CcHHHHH---hhccCCEEEEEchhhhHHHHHHHHHHhCCCeEeecccCHHHH
Confidence 357999999999999983 3311 1223332 2333334443444333344444433 343323334577 678
Q ss_pred HHHHHHHhhccCCCccccccCCC-CcHHH--H-------HHhcccCCCCCCEEEEEcCCCChhHHHHHH-HhCCCeeEEE
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSK-ATGKI--L-------ASELPKNGKKKCTVLYPASAKASNEIEEGL-SNRGFEVVRL 206 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~-~~~e~--L-------~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L-~~~G~~v~~~ 206 (300)
.+.|++.... .|..-.-.|.. .-.+. + ...+......|+++++..+..-.-.|...| .+.|+.|..+
T Consensus 256 ~~~L~~ia~~--~g~~~~~~~~e~~i~~~~~~~~~~~~~~~~~d~~~l~Gkrv~i~gd~~~~~~l~~~L~~elGm~vv~~ 333 (511)
T 2xdq_B 256 ARCIRAIQGV--LNAQGAGVNYEAFIEQQTREVSQAAWFSRSIDCQNLTGKKAVVFGDNTHAAAMTKILSREMGIHVVWA 333 (511)
T ss_dssp HHHHHHHHHH--HHTTTCCCCCHHHHHHHHHHTCCHHHHHHSHHHHTTTTCEEEEEECHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHH--hCCCcCCCChHHHHHHHHhhhhhHHHHHHHhHHHhccCCEEEEEcCChHHHHHHHHHHHhCCCEEEEe
Confidence 8888876200 02100001111 11111 0 001111233678999987666677888899 7999998655
Q ss_pred EeeeeeeCCCCcHHHHHHcC-CCCEEEEE-ChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCe
Q 022234 207 NTYTTEPVHHVDQTVLKQAL-SIPVVAVA-SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 207 ~vY~~~~~~~~~~~~~~~l~-~~d~Ivft-S~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
-+|.... .+...+.+. ..+-+++. ....++.++...+ .-++.-|..-...+++.|+.-
T Consensus 334 gt~~~~~----~~~~~~~l~~~~~~v~~~~D~~el~~~i~~~~------pDl~ig~~~~r~~a~k~gip~ 393 (511)
T 2xdq_B 334 GTYCKYD----ADWFRAEVAGFCDEVLITDDHTVVGDAIARVE------PAAIFGTQMERHVGKRLNIPC 393 (511)
T ss_dssp EESCGGG----HHHHHHHHTTTSSEEEECCCHHHHHHHHHHHC------CSEEEECHHHHHHHHHHTCCE
T ss_pred ecCCCCc----hHHHHHHHHhcCCcEEEeCCHHHHHHHHHhcC------CCEEEeccchHHHHHhcCCCe
Confidence 4543221 111222222 22344444 6556665555443 345555666666677888864
No 232
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=52.52 E-value=57 Score=22.86 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=64.9
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHHhcccC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDTE 250 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS----~s~v~~~~~~~~~~~ 250 (300)
.+||++..+.. +..+.+.|+..|++|. .+. ...+.++.+ ..+|+|++-- ......+++.+....
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~ 76 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVD---ETT------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDD 76 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEE---EEC------CHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHST
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEE---Eec------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCc
Confidence 47888877654 6678888888886542 111 112222222 3688887642 112233455554431
Q ss_pred -CCCceEEEeCHH---HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 251 -QWSNSVACIGET---TASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 251 -~~~~~vv~IG~~---Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
..+.+++.++.. ....+.+.|... ++....+.+.+.+.|...++.+
T Consensus 77 ~~~~~~ii~~~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 77 DLKNVPIVIIGNPDGFAQHRKLKAHADE-YVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp TTTTSCEEEEECGGGHHHHHHSTTCCSE-EEESSCCHHHHHHHHHHHHCCC
T ss_pred cccCCCEEEEecCCchhHHHHHHhCcch-heeCCCCHHHHHHHHHHHHcCC
Confidence 246677766332 333444567764 5667679999999999887655
No 233
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.33 E-value=18 Score=26.97 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=27.6
Q ss_pred CCCCCCeEEEeCCCC--chHHHHHHHHhCCCCEE
Q 022234 46 ASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (300)
Q Consensus 46 ~~l~g~~VlitR~~~--~~~~l~~~L~~~G~~v~ 77 (300)
.+|.|++|++|..-. ..+++.+.++++|+.|.
T Consensus 21 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~ 54 (112)
T 2ebu_A 21 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 54 (112)
T ss_dssp SSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEEC
T ss_pred CCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEe
Confidence 679999999998874 57899999999999864
No 234
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=51.96 E-value=62 Score=23.11 Aligned_cols=109 Identities=12% Similarity=0.004 Sum_probs=61.9
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHHhcccC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDTE 250 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS----~s~v~~~~~~~~~~~ 250 (300)
.+||++..+.. +..+...|+ .|+.|.. + . ...+.++.+ ..+|+|++-- .++.+ ++..+....
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~---~-----~-~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~-~~~~l~~~~ 73 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTT---A-----A-DGASGLQQALAHPPDVLISDVNMDGMDGYA-LCGHFRSEP 73 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEE---E-----S-SHHHHHHHHHHSCCSEEEECSSCSSSCHHH-HHHHHHHST
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEE---E-----C-CHHHHHHHHhcCCCCEEEEeCCCCCCCHHH-HHHHHHhCC
Confidence 58888887764 556666666 6755421 1 1 122233322 4788877742 12333 444444432
Q ss_pred -CCCceEEEeCHHH---HHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 251 -QWSNSVACIGETT---ASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 251 -~~~~~vv~IG~~T---a~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
..+.+++.++... ...+.+.|.. .++....+.+.|.+.|...++...
T Consensus 74 ~~~~~pii~~s~~~~~~~~~~~~~g~~-~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 74 TLKHIPVIFVSGYAPRTEGPADQPVPD-AYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp TTTTCCEEEEESCCC-----TTSCCCS-EEEESSCCHHHHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEeCCCcHhHHHHhhcCCc-eEEeccCCHHHHHHHHHHHHhhhc
Confidence 2366777664322 1334456765 366777799999999998886544
No 235
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=51.89 E-value=14 Score=31.26 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=35.6
Q ss_pred CccEEEEeC---------hHHHHHHHHHHHHc--CCCCceEEEEccchHHHHHHHhhccCCCccc
Q 022234 101 IFDWIIITS---------PEAGSVFLEAWKEA--GTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 154 (300)
Q Consensus 101 ~~d~ivFTS---------~~av~~~~~~l~~~--~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 154 (300)
...+||||| .|-++...+.+.+. .-.++.+++||.+....++.. |..+
T Consensus 57 ~~~~IvitSDrGLcG~~Nsni~k~~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~------~~~i 115 (230)
T 1fs0_G 57 RVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSV------GGNV 115 (230)
T ss_dssp EEEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHH------CCCE
T ss_pred cEEEEEEeCCccccccccHHHHHHHHHHHHHhhcCCCcEEEEEEeHHHHHHHHhC------CCce
Confidence 346999999 77777766655432 113578999999999999988 7655
No 236
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=51.88 E-value=24 Score=28.22 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=39.5
Q ss_pred EEEEEcCCC----ChhHHHHHHHh---CCCeeEEEEeeeeeeCC----------CCcHHHHHHcCCCCEEEEECh-----
Q 022234 179 TVLYPASAK----ASNEIEEGLSN---RGFEVVRLNTYTTEPVH----------HVDQTVLKQALSIPVVAVASP----- 236 (300)
Q Consensus 179 ~vL~~rg~~----~~~~L~~~L~~---~G~~v~~~~vY~~~~~~----------~~~~~~~~~l~~~d~IvftS~----- 236 (300)
++|++-|.. ....+.+.+.+ .|.++..+.+++ .+.- +...+..+.+...|.|+|.||
T Consensus 8 kilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~-~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~ 86 (193)
T 1rtt_A 8 KVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISG-IPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYS 86 (193)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTT-CCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHH-CCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccC
Confidence 566665543 23344444432 356666666655 1110 111223444567899999995
Q ss_pred --HHHHHHHHHhcc
Q 022234 237 --SAVRSWVNLISD 248 (300)
Q Consensus 237 --s~v~~~~~~~~~ 248 (300)
..++.|++.+..
T Consensus 87 ~p~~lK~~iD~~~~ 100 (193)
T 1rtt_A 87 MAGVLKNAIDWASR 100 (193)
T ss_dssp ECHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhcc
Confidence 789999998764
No 237
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=51.49 E-value=70 Score=23.54 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=59.9
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe----ChHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT----SPEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT----S~~av~~~~~~l 120 (300)
..+.+++||+.-... ....+...|++.|+.+..+ .+.++..+.+....+|.|+.- ..++.+.+. .+
T Consensus 10 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~-~l 80 (143)
T 3m6m_D 10 ARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCV--------NGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLK-QL 80 (143)
T ss_dssp -----CEEEEECSSHHHHHHHHHHHHC--CEEEEE--------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHH-HH
T ss_pred cccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH-HH
Confidence 345678999987654 3467778888888765432 122333333445679988874 334554443 33
Q ss_pred HH---cCCCCceEEEE-ccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 121 KE---AGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 121 ~~---~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
++ ......+++++ +....+...+.+.. |.. +++....+.+.|.+.+...
T Consensus 81 r~~~~~~~~~~pii~~s~~~~~~~~~~~~~~---Ga~-~~l~KP~~~~~L~~~l~~~ 133 (143)
T 3m6m_D 81 RVMQASGMRYTPVVVLSADVTPEAIRACEQA---GAR-AFLAKPVVAAKLLDTLADL 133 (143)
T ss_dssp HHHHHTTCCCCCEEEEESCCCHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHHH
T ss_pred HhchhccCCCCeEEEEeCCCCHHHHHHHHHc---Chh-heeeCCCCHHHHHHHHHHH
Confidence 32 22334555554 43343333332111 554 3566667888888877654
No 238
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=51.15 E-value=1.1e+02 Score=25.82 Aligned_cols=16 Identities=6% Similarity=0.021 Sum_probs=9.3
Q ss_pred CCCCEEEEEChHHHHH
Q 022234 226 LSIPVVAVASPSAVRS 241 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~ 241 (300)
.++|+|++.+......
T Consensus 68 ~~vDgII~~~~~~~~~ 83 (302)
T 2qh8_A 68 ENPDVLVGIATPTAQA 83 (302)
T ss_dssp TCCSEEEEESHHHHHH
T ss_pred CCCCEEEECChHHHHH
Confidence 4677777666544443
No 239
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=51.12 E-value=35 Score=29.45 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=65.8
Q ss_pred CCCeEEEeCCCCchHHHHH-----H--------HHhC-CCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH--
Q 022234 49 SNPKVVVTRERGKNGKLIK-----A--------LAKH-RIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA-- 112 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~-----~--------L~~~-G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a-- 112 (300)
.+.+|++.-+..+...+-. . |+.+ |++|+.+-.- .| .+++.+.....+.|.|...+...
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~--vp---~e~iv~aa~e~~~d~VglS~l~t~~ 193 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQ--VA---NEDFIKKAVELEADVLLVSQTVTQK 193 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSS--BC---HHHHHHHHHHTTCSEEEEECCCCTT
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCC--CC---HHHHHHHHHHcCCCEEEEEeecCCc
Confidence 3567877766544333222 2 7788 9999887651 11 23444444456889888776333
Q ss_pred ------HHHHHHHHHHcCC-CCceEEEEccc-hHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 113 ------GSVFLEAWKEAGT-PNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 113 ------v~~~~~~l~~~~~-~~~~i~aVG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
+..+.+.+++.+. +++++++=|.. +.+.+++. |....+ ++...+..+++.|.
T Consensus 194 ~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~a~~i------Gad~~~-~da~~~~~~a~~l~ 253 (262)
T 1xrs_B 194 NVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIAKEL------GYDAGF-GPGRFADDVATFAV 253 (262)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTT------TCSEEE-CTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHc------CCeEEE-CCchHHHHHHHHHH
Confidence 3445666666664 35888888865 44455555 877644 44445555555543
No 240
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=50.72 E-value=12 Score=33.71 Aligned_cols=172 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCeEEEeCCCCchHHHHHHH-HhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HH-HHHHHHHcCCC
Q 022234 50 NPKVVVTRERGKNGKLIKAL-AKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SV-FLEAWKEAGTP 126 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L-~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~-~~~~l~~~~~~ 126 (300)
.|||+++...+...++.+.+ ++.|+++...+-.......+ ...++|.|+..+..-+ +. +++.+...+++
T Consensus 1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk 72 (343)
T 2yq5_A 1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQALTSATVD--------LAEGCSSVSLKPLGPVDEEVVYQKLSEYGVK 72 (343)
T ss_dssp -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSCCSTTGGG--------GGTTCSEEEECCSSCBCCHHHHHHHHHTTCC
T ss_pred CceEEEEecCcccHHHHHHHHHhCCeEEEECCCCCCHHHHH--------HhcCCcEEEEcCCCCcCHHHHHHhccccCce
Q ss_pred CceEEEEccchHH--HHHHHhhccCCCccccccCCCCcHHHHH------------------------------HhcccCC
Q 022234 127 NVRIGVVGAGTAS--IFEEVIQSSKCSLDVAFSPSKATGKILA------------------------------SELPKNG 174 (300)
Q Consensus 127 ~~~i~aVG~~Ta~--~L~~~~~~~~~G~~~~~~p~~~~~e~L~------------------------------~~L~~~~ 174 (300)
-+-...+|-.--. ++++. |+.+...| .++++..+ .......
T Consensus 73 ~I~~~~~G~d~id~~~~~~~------gI~v~n~p-~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~ 145 (343)
T 2yq5_A 73 CIGLRIVGFNTINFDWTKKY------NLLVTNVP-VYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNE 145 (343)
T ss_dssp EEEESSSCCTTBCSSTTCC--------CEEECCS-CSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCC
T ss_pred EEEECceeecccchhHHHhC------CEEEEECC-CCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccc
Q ss_pred CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCC--CCcHHHHHHcCCCCEEEEECh
Q 022234 175 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH--HVDQTVLKQALSIPVVAVASP 236 (300)
Q Consensus 175 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~--~~~~~~~~~l~~~d~IvftS~ 236 (300)
..|+++.+++-..-...+...|+..|.+|..+..|...... .....+.+.+...|+|++.-|
T Consensus 146 l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P 209 (343)
T 2yq5_A 146 IYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTP 209 (343)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCC
T ss_pred cCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCC
No 241
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=50.60 E-value=41 Score=29.39 Aligned_cols=168 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred hhHHHhhhcCCccEEE-EeChHHHHHHHHHHHHcCCCCceEEEEccchHHHH---HHHhhccCCCccccccCCCCc-HHH
Q 022234 91 DRLSSVLNDTIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF---EEVIQSSKCSLDVAFSPSKAT-GKI 165 (300)
Q Consensus 91 ~~l~~~l~~~~~d~iv-FTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L---~~~~~~~~~G~~~~~~p~~~~-~e~ 165 (300)
....+.+.....+.|| ..+..........+.+. +++++..+......- ... ..-....|.... +..
T Consensus 79 ~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 149 (386)
T 3sg0_A 79 QNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEA---KTPLMTMAAAAILVAPMDERR------KWVYKVVPNDDIMAEA 149 (386)
T ss_dssp HHHHHHHHTSCCSEEECCSSHHHHHHHHHHHHHT---TCCEEECCCCGGGTCSCCTTG------GGEEECSCCHHHHHHH
T ss_pred HHHHHHHhhcCceEEECCCCchhHHHHHHHHHhc---CCeEEEecCCCccccccCCCC------CcEEecCCCcHHHHHH
Q ss_pred HHHhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-H
Q 022234 166 LASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-S 237 (300)
Q Consensus 166 L~~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~-s 237 (300)
+++.+.+. ..++|.++..+.. ...+.+.|++.|+.+.....|... ..+....+..+ .++|+|++.+. .
T Consensus 150 ~~~~l~~~--g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~~~~~~~dav~~~~~~~ 225 (386)
T 3sg0_A 150 IGKYIAKT--GAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARS--DASVTGQVLKIIATKPDAVFIASAGT 225 (386)
T ss_dssp HHHHHHHT--TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTT--CSCCHHHHHHHHHTCCSEEEEECCSG
T ss_pred HHHHHHhc--CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCcHHHHHHHHHhcCCCEEEEecCcc
Q ss_pred HHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcC
Q 022234 238 AVRSWVNLISDTEQWSNSVACIGETTASAAKRLG 271 (300)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G 271 (300)
.+-.+++.+.+.+.....+...|-.....++..|
T Consensus 226 ~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 259 (386)
T 3sg0_A 226 PAVLPQKALRERGFKGAIYQTHGVATEEFIKLGG 259 (386)
T ss_dssp GGHHHHHHHHHTTCCSEEECCGGGCSHHHHHHHG
T ss_pred hHHHHHHHHHHcCCCCcEEeccccCCHHHHHhhh
No 242
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=50.59 E-value=85 Score=26.51 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=50.7
Q ss_pred CCCCCCccccccccccccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEE
Q 022234 27 PLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWI 105 (300)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~i 105 (300)
.++-+..|++..+ ....+.|+++|||..... ...+++.|.+.|++|+.+- + .+..++....+.....+..
T Consensus 12 ~~~~~~~~~~~m~----~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~--r---~~~~~~~~~~~~~~~~~~~ 82 (273)
T 3uf0_A 12 DLGTENLYFQSMT----GPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWG--R---TDGVKEVADEIADGGGSAE 82 (273)
T ss_dssp -----------------CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--S---STHHHHHHHHHHTTTCEEE
T ss_pred cccccccchhhcc----cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEc--C---HHHHHHHHHHHHhcCCcEE
Confidence 3444556666533 224688999999988753 4689999999999887543 1 1111222222222222222
Q ss_pred E----EeChHHHHHHHHHHHHcCCCCceEEEEc
Q 022234 106 I----ITSPEAGSVFLEAWKEAGTPNVRIGVVG 134 (300)
Q Consensus 106 v----FTS~~av~~~~~~l~~~~~~~~~i~aVG 134 (300)
+ +++..+++.+.+.+.+.+.-+.-|.+.|
T Consensus 83 ~~~~Dv~d~~~v~~~~~~~~~~g~iD~lv~nAg 115 (273)
T 3uf0_A 83 AVVADLADLEGAANVAEELAATRRVDVLVNNAG 115 (273)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EEEecCCCHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 2 3678888888776665543344444444
No 243
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=49.96 E-value=71 Score=23.18 Aligned_cols=106 Identities=20% Similarity=0.100 Sum_probs=63.4
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc----CCCCEEEEECh----HHHHHHHHHhcc
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA----LSIPVVAVASP----SAVRSWVNLISD 248 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l----~~~d~IvftS~----s~v~~~~~~~~~ 248 (300)
.+||++..+.. +..|...|+..|+.|. ++. ...+.++.+ ..+|+|++--. .+.+ ++..+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~---~~~------~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~-~~~~l~~ 73 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVL---TAS------SSTEGLRIFTENCNSIDVVITDMKMPKLSGMD-ILREIKK 73 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE---EES------SHHHHHHHHHHTTTTCCEEEEESCCSSSCHHH-HHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEE---EeC------CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHH-HHHHHHH
Confidence 58888877654 6778888998886542 111 111222222 36888877532 2333 3444433
Q ss_pred cCCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 249 TEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 249 ~~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
.. .+.+++.++ ......+.+.|..- ++....+.+.|.++|...+.
T Consensus 74 ~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 74 IT-PHMAVIILTGHGDLDNAILAMKEGAFE-YLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp HC-TTCEEEEEECTTCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHH
T ss_pred hC-CCCeEEEEECCCCHHHHHHHHHhCcce-eEeCCCCHHHHHHHHHHHHH
Confidence 22 356666654 34455667789764 56666799999999887664
No 244
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=49.81 E-value=33 Score=27.94 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=40.0
Q ss_pred cCCCCEEEEEChHHHHHHHHH-hcccCCCCceEEE--eCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 225 ALSIPVVAVASPSAVRSWVNL-ISDTEQWSNSVAC--IGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~~~-~~~~~~~~~~vv~--IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
+.+.|+++.+.+....+..-. ..+......++++ -++...+.+++.|...++.|. +...+.+.+.+..
T Consensus 63 i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p~----~~~~~~l~~~~~~ 133 (218)
T 3l4b_C 63 VSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMGITTVLNLT----TLITNTVEALIFP 133 (218)
T ss_dssp CCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHHTCEECCCHH----HHHHHHHHHHHCT
T ss_pred cccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHCCCCEEECHH----HHHHHHHHHHhcc
Confidence 468898888777665544322 2221123445554 588889999999997654332 3444555555443
No 245
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=49.75 E-value=48 Score=28.01 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=25.5
Q ss_pred CCCeEEEeCC----------------CC-chHHHHHHHHhCCCCEEEe
Q 022234 49 SNPKVVVTRE----------------RG-KNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 49 ~g~~VlitR~----------------~~-~~~~l~~~L~~~G~~v~~~ 79 (300)
.|++||||.. .+ ....+++.+.++|++|..+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv 49 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLI 49 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4899999987 44 5679999999999999865
No 246
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=49.60 E-value=44 Score=26.02 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH-----HHHHHHHHHHcCCCCceEEEEcc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA-----GSVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a-----v~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
+.+++.|++.|+++..+.+- ..++.+.+.. ....+|.|||-||.= ...|+..+......+.++++.|.
T Consensus 23 ~~ia~~l~~~g~~v~~~~~~---~~~~~~~~~~--~~~~~d~ii~Gspty~g~~p~~~~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 23 QAIINGITKTGVGVDVVDLG---AAVDLQELRE--LVGRCTGLVIGMSPAASAASIQGALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHHHTTCEEEEEESS---SCCCHHHHHH--HHHTEEEEEEECCBTTSHHHHHHHHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHHHHCCCeEEEEECc---CcCCHHHHHH--HHHhCCEEEEEcCcCCCCccHHHHHHHHHhhcccCCEEEEEEc
Confidence 44566677778776544332 2112222211 345799999999741 13555556555556788888874
No 247
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=49.53 E-value=43 Score=29.22 Aligned_cols=93 Identities=11% Similarity=0.008 Sum_probs=56.0
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEE-eChHHHHHHHHHHHH
Q 022234 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIII-TSPEAGSVFLEAWKE 122 (300)
Q Consensus 49 ~g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivF-TS~~av~~~~~~l~~ 122 (300)
..++|.+..+.. ..+.+.+.|+++|+++.....+... ..+.......+.....|.|++ .+......+++++.+
T Consensus 150 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~ 228 (375)
T 4evq_A 150 GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP-DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAA 228 (375)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHH
T ss_pred CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCC-CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHH
Confidence 456777665433 2456778899999987543333211 123333322232346889888 777777788888888
Q ss_pred cCCCCceEEEEccchHHHHHH
Q 022234 123 AGTPNVRIGVVGAGTASIFEE 143 (300)
Q Consensus 123 ~~~~~~~i~aVG~~Ta~~L~~ 143 (300)
.+.. ++++..|..+...++.
T Consensus 229 ~g~~-vp~~~~~~~~~~~~~~ 248 (375)
T 4evq_A 229 ANLG-IPLWGPGFLTDGVEAA 248 (375)
T ss_dssp TTCC-CCEEEEGGGTTTTHHH
T ss_pred cCCC-ceEEecCcCCHHHHHh
Confidence 8764 7777766433334443
No 248
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=49.11 E-value=46 Score=26.76 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=34.7
Q ss_pred HHHHHHhCCCeeEEEEeeeeeeCC------CCc---HHHHHHcCCCCEEEEECh-------HHHHHHHHHhcc
Q 022234 192 IEEGLSNRGFEVVRLNTYTTEPVH------HVD---QTVLKQALSIPVVAVASP-------SAVRSWVNLISD 248 (300)
Q Consensus 192 L~~~L~~~G~~v~~~~vY~~~~~~------~~~---~~~~~~l~~~d~IvftS~-------s~v~~~~~~~~~ 248 (300)
+.+.++ .|.+|+.+.+|+. +.- ..+ .++.+.+...|.|||.|| ..+++|++.+..
T Consensus 25 ~~~~~~-~~~~v~~~dl~~l-p~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~ 95 (192)
T 3fvw_A 25 AETIIG-DRAQVSYLSYDRV-PFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSR 95 (192)
T ss_dssp HHHHHT-TSSEEEECCCSSC-CCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTS
T ss_pred HHHhcC-CCCEEEEEeCccC-CCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhc
Confidence 344444 5777777777642 210 011 234444568899999987 679999998764
No 249
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=49.09 E-value=17 Score=26.05 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=27.8
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEE
Q 022234 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~ 77 (300)
..++.|++|++|..-. ..+++.+.++++|+.+.
T Consensus 5 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~ 38 (92)
T 1l7b_A 5 GEALKGLTFVITGELSRPREEVKALLRRLGAKVT 38 (92)
T ss_dssp CCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEe
Confidence 3679999999997754 57899999999999874
No 250
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=49.05 E-value=17 Score=30.09 Aligned_cols=54 Identities=15% Similarity=0.007 Sum_probs=33.5
Q ss_pred cCCCCEEEEEChHHHHHHH--HHhcccCCCCceEEE--eCHHHHHHHHHcCCCeEEecC
Q 022234 225 ALSIPVVAVASPSAVRSWV--NLISDTEQWSNSVAC--IGETTASAAKRLGLKNVYYPT 279 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~--~~~~~~~~~~~~vv~--IG~~Ta~~l~~~G~~~~~v~~ 279 (300)
+.+.|.++.+.+....+.. ..+++.+ .+.++++ -.+...+.+++.|...++.|.
T Consensus 69 i~~ad~vi~~~~~d~~n~~~~~~a~~~~-~~~~iia~~~~~~~~~~l~~~G~~~vi~p~ 126 (234)
T 2aef_A 69 VRGARAVIVDLESDSETIHCILGIRKID-ESVRIIAEAERYENIEQLRMAGADQVISPF 126 (234)
T ss_dssp CTTCSEEEECCSCHHHHHHHHHHHHHHC-SSSEEEEECSSGGGHHHHHHHTCSEEECHH
T ss_pred cchhcEEEEcCCCcHHHHHHHHHHHHHC-CCCeEEEEECCHhHHHHHHHCCCCEEECHH
Confidence 4678988887776544433 2233222 2445554 477778899999998765543
No 251
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=48.70 E-value=20 Score=28.17 Aligned_cols=28 Identities=14% Similarity=0.447 Sum_probs=21.4
Q ss_pred HHHHHcCCCCEEEEECh-------HHHHHHHHHhc
Q 022234 220 TVLKQALSIPVVAVASP-------SAVRSWVNLIS 247 (300)
Q Consensus 220 ~~~~~l~~~d~IvftS~-------s~v~~~~~~~~ 247 (300)
+..+.+...|.|+|.|| ..++.|++.+.
T Consensus 64 ~~~~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~ 98 (184)
T 1rli_A 64 SIIERILQCHILIFATPIYWFGMSGTLKLFIDRWS 98 (184)
T ss_dssp HHHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTHH
T ss_pred HHHHHHHhCCEEEEEeCccccCCcHHHHHHHHHhH
Confidence 34455678999999994 78899998763
No 252
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=48.50 E-value=15 Score=30.08 Aligned_cols=56 Identities=11% Similarity=0.245 Sum_probs=37.9
Q ss_pred HHHHHHHhC--CCeeEEEEeeeeeeCCCC-------------------------cHHHHHHcCCCCEEEEECh-------
Q 022234 191 EIEEGLSNR--GFEVVRLNTYTTEPVHHV-------------------------DQTVLKQALSIPVVAVASP------- 236 (300)
Q Consensus 191 ~L~~~L~~~--G~~v~~~~vY~~~~~~~~-------------------------~~~~~~~l~~~d~IvftS~------- 236 (300)
.+.+.|++. |.+|+.+.+|+...+... ..++.+.+...|.|||.||
T Consensus 24 ~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~p 103 (212)
T 3r6w_A 24 VFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVP 103 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECBTTBCC
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEcCcccccCC
Confidence 456677766 889999999876322111 0112333557899999886
Q ss_pred HHHHHHHHHh
Q 022234 237 SAVRSWVNLI 246 (300)
Q Consensus 237 s~v~~~~~~~ 246 (300)
..++.|++.+
T Consensus 104 a~lK~~iD~~ 113 (212)
T 3r6w_A 104 SGLKAWIDQI 113 (212)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6899999987
No 253
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=48.47 E-value=91 Score=27.33 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=53.1
Q ss_pred CCCCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEE-eChHHHHHHHHHHH
Q 022234 48 NSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIII-TSPEAGSVFLEAWK 121 (300)
Q Consensus 48 l~g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivF-TS~~av~~~~~~l~ 121 (300)
+..++|.+..... ....+.+.|+++|+++...-.+... ..+.......+.....|.|++ .+......++.++.
T Consensus 141 ~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~ 219 (392)
T 3lkb_A 141 KKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG-NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAK 219 (392)
T ss_dssp CTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT-CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC-CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHH
Confidence 3467887765542 3456888899999987643322211 123333323333467899985 77777888888888
Q ss_pred HcCCCCceEEEEc
Q 022234 122 EAGTPNVRIGVVG 134 (300)
Q Consensus 122 ~~~~~~~~i~aVG 134 (300)
+.++ +.+++..+
T Consensus 220 ~~g~-~~~~~~~~ 231 (392)
T 3lkb_A 220 RLGL-KMRHLGAH 231 (392)
T ss_dssp HTTC-CCEEEECG
T ss_pred HcCC-CceEEEec
Confidence 8876 45666543
No 254
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=48.43 E-value=61 Score=29.00 Aligned_cols=77 Identities=10% Similarity=0.037 Sum_probs=48.8
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeE-------------eeeCCCchhHHHhhhcCCccEEEEe-ChHHH
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNDTIFDWIIIT-SPEAG 113 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~-------------~~~~~~~~~l~~~l~~~~~d~ivFT-S~~av 113 (300)
+.+++|||+-.......+++.+++.|++++.+-... ..+..+.+.+.+.+.....|.|+.. +-..+
T Consensus 5 ~~~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~~~~ 84 (403)
T 4dim_A 5 YDNKRLLILGAGRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDTGI 84 (403)
T ss_dssp -CCCEEEEECCCGGGHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCSTTH
T ss_pred cCCCEEEEECCcHhHHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcchhH
Confidence 467899999887777889999999999988763211 1122233444444444568888863 44455
Q ss_pred HHHHHHHHHcC
Q 022234 114 SVFLEAWKEAG 124 (300)
Q Consensus 114 ~~~~~~l~~~~ 124 (300)
..+...+.+.+
T Consensus 85 ~~~a~~~~~~g 95 (403)
T 4dim_A 85 VSLARICDKEN 95 (403)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 55555555544
No 255
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=48.42 E-value=77 Score=23.12 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=60.3
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe----ChHHHHHHHHHHHH
Q 022234 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT----SPEAGSVFLEAWKE 122 (300)
Q Consensus 48 l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT----S~~av~~~~~~l~~ 122 (300)
..+++||+.-... ....+...|+..|+++..+ .+..+....+....+|.|++- ..++.+ +.+.+++
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~-~~~~l~~ 76 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQC--------GNAIEAVPVAVKTHPHLIITEANMPKISGMD-LFNSLKK 76 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEE--------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHH-HHHHHHT
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHHcCCCCEEEEcCCCCCCCHHH-HHHHHHc
Confidence 4467888887654 5678888999888755421 122333333434568988875 234444 4445554
Q ss_pred c-CCCCceEEEEcc-chHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 123 A-GTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 123 ~-~~~~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
. ...+++++++.. .......+.+.. |.. ++++...+.+.|...+.
T Consensus 77 ~~~~~~~pii~ls~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~L~~~i~ 123 (147)
T 2zay_A 77 NPQTASIPVIALSGRATAKEEAQLLDM---GFI-DFIAKPVNAIRLSARIK 123 (147)
T ss_dssp STTTTTSCEEEEESSCCHHHHHHHHHH---TCS-EEEESSCCHHHHHHHHH
T ss_pred CcccCCCCEEEEeCCCCHHHHHHHHhC---CCC-EEEeCCCCHHHHHHHHH
Confidence 2 234666666544 333322222111 554 34555667777776664
No 256
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=48.39 E-value=1.4e+02 Score=26.07 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHHcCC
Q 022234 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKEAGT 125 (300)
Q Consensus 47 ~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~~~ 125 (300)
.+..|+|+++.+-. ....+.|++.|+++.. ....+.+++.+.+ .++|.++..+..-+ +.+++.+.+..+
T Consensus 2 ~~~~mkil~~~~~~--~~~~~~l~~~~~~v~~------~~~~~~~~~~~~~--~~~d~~i~~~~~~~~~~~l~~~~~Lk~ 71 (313)
T 2ekl_A 2 AIYTVKALITDPID--EILIKTLREKGIQVDY------MPEISKEELLNII--GNYDIIVVRSRTKVTKDVIEKGKKLKI 71 (313)
T ss_dssp CCCCCEEEECSCCC--HHHHHHHHHTTCEEEE------CTTCCHHHHHHHG--GGCSEEEECSSSCBCHHHHHHCTTCCE
T ss_pred CccceEEEEECCCC--HHHHHHHHhCCcEEEe------CCCCCHHHHHHHh--cCCeEEEEcCCCCCCHHHHhhCCCCeE
Q ss_pred CCceEEEEccchHH----HHHHHhhccCCCccccccCCCCc---HHHHHHhcccC----------------------CCC
Q 022234 126 PNVRIGVVGAGTAS----IFEEVIQSSKCSLDVAFSPSKAT---GKILASELPKN----------------------GKK 176 (300)
Q Consensus 126 ~~~~i~aVG~~Ta~----~L~~~~~~~~~G~~~~~~p~~~~---~e~L~~~L~~~----------------------~~~ 176 (300)
|...|..+-. ++.+. |+.+...|.... +|..+..+-.. ...
T Consensus 72 ----I~~~~~G~d~id~~~~~~~------gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~ 141 (313)
T 2ekl_A 72 ----IARAGIGLDNIDTEEAEKR------NIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELA 141 (313)
T ss_dssp ----EEECSSCCTTBCHHHHHHT------TCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCT
T ss_pred ----EEEcCCCCCccCHHHHHhC------CeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCC
Q ss_pred CCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 022234 177 KCTVLYPASAKASNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 177 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 206 (300)
|+++.+++...-...+...|+..|.+|..+
T Consensus 142 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~ 171 (313)
T 2ekl_A 142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAY 171 (313)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEE
No 257
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=48.24 E-value=21 Score=28.43 Aligned_cols=57 Identities=7% Similarity=0.180 Sum_probs=36.3
Q ss_pred HHHHHHHhC------CCeeEEEEeeeeeeCCC-----------------Cc---HHHHHHcCCCCEEEEECh-------H
Q 022234 191 EIEEGLSNR------GFEVVRLNTYTTEPVHH-----------------VD---QTVLKQALSIPVVAVASP-------S 237 (300)
Q Consensus 191 ~L~~~L~~~------G~~v~~~~vY~~~~~~~-----------------~~---~~~~~~l~~~d~IvftS~-------s 237 (300)
.+.+.|++. |.+|+.+.+++...... .. ....+.+...|.|+|.|| .
T Consensus 22 ~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP~y~~~~p~ 101 (191)
T 1t0i_A 22 YVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPA 101 (191)
T ss_dssp HHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEECBTTBCCH
T ss_pred HHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEeceECCCCCH
Confidence 345556655 67888887776421110 01 223444568999999995 6
Q ss_pred HHHHHHHHhc
Q 022234 238 AVRSWVNLIS 247 (300)
Q Consensus 238 ~v~~~~~~~~ 247 (300)
.++.|++.+.
T Consensus 102 ~lK~~iD~~~ 111 (191)
T 1t0i_A 102 ALKNAIDRLY 111 (191)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHHHHH
Confidence 8899998875
No 258
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=48.13 E-value=39 Score=29.39 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=27.0
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEe
Q 022234 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 47 ~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (300)
.+.+|+||||...+ -...+++.|.+.|++|+.+
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 55 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGL 55 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 45689999999865 3568899999999998875
No 259
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=48.08 E-value=12 Score=30.84 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=25.3
Q ss_pred CCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 48 l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
+.||++|||..... ...+++.|.+.|+.|+..
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~ 36 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVA 36 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEe
Confidence 56899999988653 468999999999887654
No 260
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=48.04 E-value=15 Score=31.41 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCCCchHHHHHHHHhCCCCEEEeeeeEee-eCCCchhHHHhhhcCCccEEEEeC
Q 022234 57 RERGKNGKLIKALAKHRIDCLELPLIQHA-QGPDTDRLSSVLNDTIFDWIIITS 109 (300)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~i~~~-~~~~~~~l~~~l~~~~~d~ivFTS 109 (300)
.+......+.+.|++.|+++..+|.-+.. ..++..+ .+..||.|||..
T Consensus 37 ~~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~-----~L~~yDvIIl~~ 85 (256)
T 2gk3_A 37 KYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESID-----ELNRYDVIVISD 85 (256)
T ss_dssp EEEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCSHH-----HHHTCSEEEEES
T ss_pred CccccHHHHHHHHHhcCceEEEEecccchhhCCcChh-----HHhcCCEEEEeC
Confidence 34456788999999999999887642111 1121111 356899999986
No 261
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=47.86 E-value=63 Score=28.79 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=57.0
Q ss_pred CCEEEEE-cCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChH-------HHHHHH
Q 022234 177 KCTVLYP-ASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSWV 243 (300)
Q Consensus 177 ~~~vL~~-rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s-------~v~~~~ 243 (300)
.++++++ .+..+ .+.+.+.|.+.|+.+..+.+. +....++.+.+...|.|+|.||. .++.|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~d~ii~gsp~~~~~~~~~~~~~l 326 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCK-----ACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTL 326 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETT-----TSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECC-----CCCHHHHHHHHHHCCEEEEECCccCCCchHHHHHHH
Confidence 3566555 34333 234566777778655443332 12233444445689999999963 577888
Q ss_pred HHhcccCCCCceEEEeC---------HHHHHHHHHcCCCeE----EecCCCCHHH
Q 022234 244 NLISDTEQWSNSVACIG---------ETTASAAKRLGLKNV----YYPTHPGLEG 285 (300)
Q Consensus 244 ~~~~~~~~~~~~vv~IG---------~~Ta~~l~~~G~~~~----~v~~~p~~~~ 285 (300)
+.+....+.+.+++++| ....+.+.+.|+.++ .+...|+.+.
T Consensus 327 ~~l~~~~l~~k~~~~f~t~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~ 381 (402)
T 1e5d_A 327 QYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHAD 381 (402)
T ss_dssp HHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHH
T ss_pred HHhhhcccCCCEEEEEEcCCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHH
Confidence 77654322334433321 234556666788642 2345566554
No 262
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=47.63 E-value=52 Score=25.56 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH---HH--HHHHHHHHHcCCCCceEEEEcc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE---AG--SVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~---av--~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
+.+++.|++.|+++..+.+-+ .+.+.+.. ....||.|||-||. .+ ..|++.+......+.+++++|.
T Consensus 19 ~~ia~~l~~~g~~v~~~~~~~----~~~~~~~~--~~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fgs 90 (161)
T 3hly_A 19 QAIGRGLVKTGVAVEMVDLRA----VDPQELIE--AVSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDS 90 (161)
T ss_dssp HHHHHHHHHTTCCEEEEETTT----CCHHHHHH--HHHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEECCC----CCHHHHHH--HHHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEEc
Confidence 455666777788765444321 12222211 23578999998873 11 4566666554456778888873
No 263
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=47.49 E-value=21 Score=31.14 Aligned_cols=63 Identities=11% Similarity=0.205 Sum_probs=37.6
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCC--CCEEEee------------------eeEeeeC--CCchhHHHhhhcCCccE
Q 022234 48 NSNPKVVVTRERG-KNGKLIKALAKHR--IDCLELP------------------LIQHAQG--PDTDRLSSVLNDTIFDW 104 (300)
Q Consensus 48 l~g~~VlitR~~~-~~~~l~~~L~~~G--~~v~~~P------------------~i~~~~~--~~~~~l~~~l~~~~~d~ 104 (300)
+.+|+||||...+ -...+++.|.+.| +.++.+. -+++... .+.+.+...+....+|.
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 101 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQV 101 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence 3578999999865 3568889999999 5555432 2222222 23344545443335888
Q ss_pred EEEeCh
Q 022234 105 IIITSP 110 (300)
Q Consensus 105 ivFTS~ 110 (300)
||.+..
T Consensus 102 Vih~A~ 107 (346)
T 4egb_A 102 IVNFAA 107 (346)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 887643
No 264
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=47.05 E-value=32 Score=29.85 Aligned_cols=109 Identities=12% Similarity=-0.011 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCC-cHHHH-HHcCCCCEEEEEChHHHHHHHHHhcccCCCC
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQTVL-KQALSIPVVAVASPSAVRSWVNLISDTEQWS 253 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~~~~~-~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~ 253 (300)
+|++|.+++.- +.+ +.+.+.+++ +.+.++.+.+.. ++... ..+...|++++|..+-+..=++.+-+.-...
T Consensus 140 ~g~kV~vIG~f---P~i-~~~~~~~~~---l~V~E~~p~~g~~p~~~~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~~a 212 (270)
T 3l5o_A 140 KGKKVGVVGHF---PHL-ESLLEPICD---LSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNA 212 (270)
T ss_dssp TTSEEEEESCC---TTH-HHHHTTTSE---EEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTS
T ss_pred CCCEEEEECCc---hhH-HHHHhcCCC---EEEEECCCCCCCCChhHHHHhhccCCEEEEEeehhhcCCHHHHHhhCCCC
Confidence 57899999764 333 446666654 455566554433 22222 2357889999999987665444333221123
Q ss_pred ceEEEeCHHHH--HHHHHcCCCeEEecCCCCHHHHHHHHH
Q 022234 254 NSVACIGETTA--SAAKRLGLKNVYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 254 ~~vv~IG~~Ta--~~l~~~G~~~~~v~~~p~~~~l~~ai~ 291 (300)
..++.+||+|- -.+-++|+..+-=..-.+.+.+++.+.
T Consensus 213 ~~vvl~GPStp~~P~lf~~Gv~~laG~~V~d~~~~~~~i~ 252 (270)
T 3l5o_A 213 RRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVA 252 (270)
T ss_dssp SEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHT
T ss_pred CEEEEECCCchhhHHHHhcCcCEEEEEEEcCHHHHHHHHh
Confidence 46778999873 235567887542222246777777665
No 265
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=46.88 E-value=27 Score=33.21 Aligned_cols=139 Identities=12% Similarity=0.003 Sum_probs=79.8
Q ss_pred hHHHHHHHHhCCCCEEEeeee------------EeeeCC-CchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCC
Q 022234 62 NGKLIKALAKHRIDCLELPLI------------QHAQGP-DTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPN 127 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i------------~~~~~~-~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~ 127 (300)
..++.+.|++.|+++..+|-+ ..-+.. ..+++. +.++...-+..++..-....+.|++. +.+-
T Consensus 233 ~~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~gg~~~~ei~---~~~~A~~niv~~~~~~~~~A~~Le~r~GiP~ 309 (519)
T 1qgu_B 233 FRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSGGTTQQEMK---EAPDAIDTLLLQPWQLLKSKKVVQEMWNQPA 309 (519)
T ss_dssp HHHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCCCBCHHHHH---HGGGEEEEEESSTTTCHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHcCCeEEEecCccccccCcccCcccccCCCCCHHHHH---hhhcCCEEEEECHHHHHHHHHHHHHHcCCCe
Confidence 479999999999999988754 222211 223332 45666777777776555666666654 4443
Q ss_pred ceE-EEEc-cchHHHHHHHhhccCCCccccccCCCCc--HHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 022234 128 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 201 (300)
Q Consensus 128 ~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~ 201 (300)
+.. +-+| ..|.+.|++.. .+.|.. +|.... -..+.+.+.+. ...|+++++..+..-.-.|...|.+.|+
T Consensus 310 i~~~~PiG~~~T~~~L~~la--~~~g~~---~~~~i~~er~~~~~~l~d~~~~l~Gkrv~i~gd~~~~~~la~~L~ElGm 384 (519)
T 1qgu_B 310 TEVAIPLGLAATDELLMTVS--QLSGKP---IADALTLERGRLVDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELGC 384 (519)
T ss_dssp CCCCCCBSHHHHHHHHHHHH--HHHCCC---CCHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EecCCCcchHHHHHHHHHHH--HHHCCC---cHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHCCC
Confidence 333 3477 67888777762 111432 121100 11233333221 1267899988754444566778999998
Q ss_pred eeEEEEe
Q 022234 202 EVVRLNT 208 (300)
Q Consensus 202 ~v~~~~v 208 (300)
.+..+.+
T Consensus 385 ~vv~v~~ 391 (519)
T 1qgu_B 385 EPTVILS 391 (519)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8865544
No 266
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=46.72 E-value=1.4e+02 Score=26.46 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHHc
Q 022234 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKEA 123 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~ 123 (300)
+..+..++|+++.+.. +...+.|++.|+++...+ ..+.+++.+ ...++|.++..+...+ +.+++.+.+.
T Consensus 21 ~~~~~~~~vli~~~~~--~~~~~~l~~~~~~v~~~~------~~~~~~~~~--~~~~~d~li~~~~~~~~~~~l~~~~~L 90 (335)
T 2g76_A 21 QSMANLRKVLISDSLD--PCCRKILQDGGLQVVEKQ------NLSKEELIA--ELQDCEGLIVRSATKVTADVINAAEKL 90 (335)
T ss_dssp -----CCEEEECSCCC--HHHHHHHHHHTCEEEECC------SCCHHHHHH--HGGGCSEEEECSSSCBCHHHHHHCSSC
T ss_pred hhhccceEEEEcCCCC--HHHHHHHHhCCCEEEECC------CCCHHHHHH--HhcCceEEEEcCCCCCCHHHHhhCCCC
Q ss_pred CCCCceEEEEccchHH----HHHHHhhccCCCccccccCCCCcHHHHHHhc----------------------------c
Q 022234 124 GTPNVRIGVVGAGTAS----IFEEVIQSSKCSLDVAFSPSKATGKILASEL----------------------------P 171 (300)
Q Consensus 124 ~~~~~~i~aVG~~Ta~----~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L----------------------------~ 171 (300)
.+ |...|..+-. ++++. |+.+...| ..+++..++.- .
T Consensus 91 k~----I~~~~~G~d~id~~~~~~~------gI~v~n~p-~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~ 159 (335)
T 2g76_A 91 QV----VGRAGTGVDNVDLEAATRK------GILVMNTP-NGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFM 159 (335)
T ss_dssp CE----EEESSSSCTTBCHHHHHHH------TCEEECCS-STTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGC
T ss_pred cE----EEECCCCcchhChHHHHhC------CeEEEECC-CccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCC
Q ss_pred cCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEee
Q 022234 172 KNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 172 ~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY 209 (300)
.....|+++.+++-..-...+...|+..|.+|..+..+
T Consensus 160 ~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 197 (335)
T 2g76_A 160 GTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPI 197 (335)
T ss_dssp BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCC
No 267
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=46.69 E-value=14 Score=31.87 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=38.9
Q ss_pred CCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 49 ~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
.+|+||||...+. ...+++.|.+.|++++.+.--......+.+.+.+.+.....|.||.+..
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~a~ 64 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEcCe
Confidence 4689999988653 4688899999999876543111112223344544443227899998753
No 268
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=46.52 E-value=23 Score=30.29 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=51.6
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccE
Q 022234 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDW 104 (300)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ 104 (300)
+.++.++.|++..- ..+.|+++|||..... ...+++.|.+.|++|+.+-.-... ..+++...+.....+.
T Consensus 11 ~~~~~~n~~~~~mm------~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~ 81 (280)
T 4da9_A 11 VDLGTENLYFQSMM------TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAE---GVAPVIAELSGLGARV 81 (280)
T ss_dssp ------------CC------SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHH---HHHHHHHHHHHTTCCE
T ss_pred ccccccchhhhhhh------hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHHHhcCCcE
Confidence 44566667777644 5688999999988753 468999999999988654311100 1112222221112222
Q ss_pred EE----EeChHHHHHHHHHHHHc-CCCCceEEEEcc
Q 022234 105 II----ITSPEAGSVFLEAWKEA-GTPNVRIGVVGA 135 (300)
Q Consensus 105 iv----FTS~~av~~~~~~l~~~-~~~~~~i~aVG~ 135 (300)
.+ +++..+++.+++.+.+. +.-+.-|.+.|-
T Consensus 82 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 82 IFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp EEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 22 36888888888876553 333555555554
No 269
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=46.49 E-value=77 Score=22.62 Aligned_cols=110 Identities=9% Similarity=0.059 Sum_probs=58.4
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEe----ChHHHHHHHHHHH
Q 022234 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIIT----SPEAGSVFLEAWK 121 (300)
Q Consensus 48 l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFT----S~~av~~~~~~l~ 121 (300)
+.+++||+.-... ....+...|++.|+..+. .. .+..+....+ ....+|.|+.- ..++.+.+ +.++
T Consensus 3 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~----~~---~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~-~~lr 74 (129)
T 3h1g_A 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVL----EA---EHGVEAWEKLDANADTKVLITDWNMPEMNGLDLV-KKVR 74 (129)
T ss_dssp ---CCEEEECSCHHHHHHHHHHHHHTTCCCEE----EE---SSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHH-HHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCcEEE----Ee---CCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHH-HHHH
Confidence 4567899887654 456788889999986221 11 1222222223 23468877752 33455544 4455
Q ss_pred HcC-CCCceEEEEccc-hHH---HHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 122 EAG-TPNVRIGVVGAG-TAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 122 ~~~-~~~~~i~aVG~~-Ta~---~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
+.. ..+.+++.+... ... ...+. |.. ++.....+.+.|.+.+..
T Consensus 75 ~~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~l~~ 123 (129)
T 3h1g_A 75 SDSRFKEIPIIMITAEGGKAEVITALKA------GVN-NYIVKPFTPQVLKEKLEV 123 (129)
T ss_dssp TSTTCTTCCEEEEESCCSHHHHHHHHHH------TCC-EEEESCCCHHHHHHHHHH
T ss_pred hcCCCCCCeEEEEeCCCChHHHHHHHHc------Ccc-EEEeCCCCHHHHHHHHHH
Confidence 432 345666665433 333 23344 554 355566778888877654
No 270
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=46.06 E-value=95 Score=23.54 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=57.5
Q ss_pred eChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEc-CC
Q 022234 108 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA-SA 186 (300)
Q Consensus 108 TS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~r-g~ 186 (300)
.|+..++...+.+...+.+++.+ ..|.... .+.+. .++..+.....+.+.+++.+.+. +|+.+++.. ..
T Consensus 65 ~~~~~~~~a~~~~~~~~~~~~~~-~~~d~~~-~~~~~------~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~ 134 (183)
T 2yxd_A 65 YLDGAIEVTKQNLAKFNIKNCQI-IKGRAED-VLDKL------EFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIVL 134 (183)
T ss_dssp CSHHHHHHHHHHHHHTTCCSEEE-EESCHHH-HGGGC------CCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHcCCCcEEE-EECCccc-cccCC------CCcEEEECCcccHHHHHHHHhhC--CCCEEEEEeccc
Confidence 36777777777666665544443 3454443 33332 45444332225566777777766 567776665 44
Q ss_pred CChhHHHHHHHhCCCeeEEEEeeeee
Q 022234 187 KASNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 187 ~~~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.....+.+.|++.|+++..+......
T Consensus 135 ~~~~~~~~~l~~~g~~~~~~~~~~~~ 160 (183)
T 2yxd_A 135 ENAAKIINEFESRGYNVDAVNVFISY 160 (183)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccHHHHHHHHHHcCCeEEEEEeeeeh
Confidence 44567888999999888777554443
No 271
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=45.71 E-value=1.6e+02 Score=25.89 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=41.6
Q ss_pred cCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEe---CH--HHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 225 ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI---GE--TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~I---G~--~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
+...|+++..|... .+++.+. .+++++++ +. ..++.+.+.|.-..+.++..+.+.|.++|.+.+..+
T Consensus 306 l~~ad~~v~~~g~~--t~~Ea~a----~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~ 377 (412)
T 3otg_A 306 LPHVDLVVHHGGSG--TTLGALG----AGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEE 377 (412)
T ss_dssp GGGCSEEEESCCHH--HHHHHHH----HTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCH
T ss_pred HhcCcEEEECCchH--HHHHHHH----hCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCH
Confidence 34678888777632 2334332 24677765 22 356777777765443344568899999998887643
No 272
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=45.23 E-value=29 Score=24.02 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=27.1
Q ss_pred CCCCCCCeEEEeC-CCCchHHHHHHHHhCCCCEE
Q 022234 45 SASNSNPKVVVTR-ERGKNGKLIKALAKHRIDCL 77 (300)
Q Consensus 45 ~~~l~g~~VlitR-~~~~~~~l~~~L~~~G~~v~ 77 (300)
+..+.|.+|.++. ..+...++.+.++.+|+.+.
T Consensus 5 ~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~ 38 (92)
T 4id3_A 5 SKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFL 38 (92)
T ss_dssp -CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred ccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEE
Confidence 3678999999997 44567889999999999975
No 273
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=45.14 E-value=66 Score=23.29 Aligned_cols=109 Identities=8% Similarity=0.053 Sum_probs=60.3
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe----ChHHHHHHHHHHH
Q 022234 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT----SPEAGSVFLEAWK 121 (300)
Q Consensus 47 ~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT----S~~av~~~~~~l~ 121 (300)
+..+++||+.-... ....+...|+..|+++..+ .+..+....+....+|.|++- ..++.+ +.+.++
T Consensus 4 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~-~~~~l~ 74 (142)
T 3cg4_A 4 AEHKGDVMIVDDDAHVRIAVKTILSDAGFHIISA--------DSGGQCIDLLKKGFSGVVLLDIMMPGMDGWD-TIRAIL 74 (142)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTCCCEEEEEESCCSSSCHHH-HHHHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEe--------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHH-HHHHHH
Confidence 34578899887664 4567888899888754321 122333334445678888874 224544 344555
Q ss_pred Hc-CCCCceEEEEccchH----HHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 122 EA-GTPNVRIGVVGAGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 122 ~~-~~~~~~i~aVG~~Ta----~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
+. ...+.+++++..... ..+.+. |.. +++....+.+.|.+.+.
T Consensus 75 ~~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~i~ 122 (142)
T 3cg4_A 75 DNSLEQGIAIVMLTAKNAPDAKMIGLQE------YVV-DYITKPFDNEDLIEKTT 122 (142)
T ss_dssp HTTCCTTEEEEEEECTTCCCCSSTTGGG------GEE-EEEESSCCHHHHHHHHH
T ss_pred hhcccCCCCEEEEECCCCHHHHHHHHhc------Ccc-EEEeCCCCHHHHHHHHH
Confidence 42 234677777754421 122233 443 34455566777766654
No 274
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=45.02 E-value=37 Score=26.87 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=60.6
Q ss_pred CCchHHHHHHHHhCC-CCEEEeeeeEeeeCCCchhHHHhh---hc-CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEE
Q 022234 59 RGKNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVL---ND-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 133 (300)
Q Consensus 59 ~~~~~~l~~~L~~~G-~~v~~~P~i~~~~~~~~~~l~~~l---~~-~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aV 133 (300)
.++..++.+.|++.| +.+..+. . .+.......+ .+ ..+|.++..++..-..|...+...+.+.-.+++|
T Consensus 107 ~~~~~~~l~~l~~~g~~~~~i~t-----~-~~~~~~~~~l~~~~~~~~f~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~i 180 (234)
T 3ddh_A 107 LPGVKETLKTLKETGKYKLVVAT-----K-GDLLDQENKLERSGLSPYFDHIEVMSDKTEKEYLRLLSILQIAPSELLMV 180 (234)
T ss_dssp CTTHHHHHHHHHHHCCCEEEEEE-----E-SCHHHHHHHHHHHTCGGGCSEEEEESCCSHHHHHHHHHHHTCCGGGEEEE
T ss_pred CccHHHHHHHHHhCCCeEEEEEe-----C-CchHHHHHHHHHhCcHhhhheeeecCCCCHHHHHHHHHHhCCCcceEEEE
Confidence 455678888999988 7765443 1 1112222222 22 4578888887777777877777777777789999
Q ss_pred ccch---HHHHHHHhhccCCCccccccCC
Q 022234 134 GAGT---ASIFEEVIQSSKCSLDVAFSPS 159 (300)
Q Consensus 134 G~~T---a~~L~~~~~~~~~G~~~~~~p~ 159 (300)
|..- -..++.. |+.+..++.
T Consensus 181 GD~~~~Di~~a~~a------G~~~v~v~~ 203 (234)
T 3ddh_A 181 GNSFKSDIQPVLSL------GGYGVHIPF 203 (234)
T ss_dssp ESCCCCCCHHHHHH------TCEEEECCC
T ss_pred CCCcHHHhHHHHHC------CCeEEEecC
Confidence 9884 4678888 998877754
No 275
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=44.99 E-value=81 Score=27.91 Aligned_cols=167 Identities=13% Similarity=0.066 Sum_probs=86.9
Q ss_pred CeEEEeCCCCchHHHHHHHH-hCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHHcCCCCc
Q 022234 51 PKVVVTRERGKNGKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKEAGTPNV 128 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~-~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~~~~~~ 128 (300)
|+|+++..........+.|. ..|+++...+-. .+ +++.+ ...++|.++..+...+ +.+++.+.+.+ +
T Consensus 1 Mkil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~----~~--~~~~~--~~~~~d~~i~~~~~~~~~~~l~~~~~~~---L 69 (333)
T 1dxy_A 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF----LD--ENTVE--WAKGFDGINSLQTTPYAAGVFEKMHAYG---I 69 (333)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC----CC--TTGGG--GGTTCSEEEECCSSCBCHHHHHHHHHTT---C
T ss_pred CEEEEEeccccCHHHHHHHHHhCCeEEEEcCCC----Ch--HHHHH--HhcCCeEEEEcCCCCCCHHHHHhCcccC---c
Confidence 57888654443444555554 357766544321 11 12211 2468899887542222 33445555422 3
Q ss_pred eEEE-Eccch----HHHHHHHhhccCCCccccccCCCCcHHHHHHh-----c--cc----------------------CC
Q 022234 129 RIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L--PK----------------------NG 174 (300)
Q Consensus 129 ~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----L--~~----------------------~~ 174 (300)
|+++ .|..+ .+++++. |+.+...|. ++++.+++. | .+ ..
T Consensus 70 k~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 142 (333)
T 1dxy_A 70 KFLTIRNVGTDNIDMTAMKQY------GIRLSNVPA-YSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKE 142 (333)
T ss_dssp CEEEESSSCCTTBCHHHHHHT------TCEEECCTT-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCC
T ss_pred eEEEEcCcccCccCHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccC
Confidence 3333 23222 3567778 998877765 333222211 1 00 01
Q ss_pred CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCC-----cHHHHHHcCCCCEEEEEChHH
Q 022234 175 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 238 (300)
Q Consensus 175 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----~~~~~~~l~~~d~IvftS~s~ 238 (300)
..|+++.+++-..-...+...|+..|++|. +|.+...... ...+.+.+...|+|++.-|.+
T Consensus 143 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~ 208 (333)
T 1dxy_A 143 LGQQTVGVMGTGHIGQVAIKLFKGFGAKVI---AYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGI 208 (333)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEE---EECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCc
Confidence 256789888766666678889999998764 4544322110 001112234678888877654
No 276
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=44.87 E-value=83 Score=27.30 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=14.3
Q ss_pred cCCCCHHHHHHHHHHHHHc
Q 022234 278 PTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 278 ~~~p~~~~l~~ai~~~~~~ 296 (300)
.+..+.++++++|.+.+..
T Consensus 326 ~~~~d~~~l~~~i~~l~~~ 344 (394)
T 3okp_A 326 VEGSDVDKLSELLIELLDD 344 (394)
T ss_dssp CCTTCHHHHHHHHHHHHTC
T ss_pred eCCCCHHHHHHHHHHHHhC
Confidence 3445889999999887754
No 277
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=44.59 E-value=21 Score=29.34 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEe
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (300)
..+.||+||||.... -...+++.|.+.|++|..+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~ 51 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM 51 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEE
Confidence 778999999999865 3568999999999987764
No 278
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=44.46 E-value=69 Score=27.48 Aligned_cols=92 Identities=13% Similarity=-0.004 Sum_probs=52.1
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC-hHHHHHHHHHHHH
Q 022234 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS-PEAGSVFLEAWKE 122 (300)
Q Consensus 49 ~g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS-~~av~~~~~~l~~ 122 (300)
..++|.+..+.. ..+.+.+.|+++|+++.....+... ..+.......+.....|.|++.+ ......+++++.+
T Consensus 134 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~ 212 (362)
T 3snr_A 134 NVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP-DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRE 212 (362)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC-CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHH
Confidence 347777664432 2356778888999886643333221 12333322223235688988887 6667777788888
Q ss_pred cCCCCceEEE-EccchHHHHH
Q 022234 123 AGTPNVRIGV-VGAGTASIFE 142 (300)
Q Consensus 123 ~~~~~~~i~a-VG~~Ta~~L~ 142 (300)
.+++ .+++. .|-.....++
T Consensus 213 ~g~~-~p~i~~~g~~~~~~~~ 232 (362)
T 3snr_A 213 RGYN-GLIYQTHGAASMDFIR 232 (362)
T ss_dssp TTCC-SEEEECGGGCSHHHHH
T ss_pred cCCC-ccEEeccCcCcHHHHH
Confidence 7764 34433 3444444443
No 279
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=44.40 E-value=70 Score=26.53 Aligned_cols=85 Identities=8% Similarity=-0.055 Sum_probs=51.7
Q ss_pred CCCCCCeEEEeCCC--C-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEE--EeChHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRER--G-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWII--ITSPEAGSVFLEA 119 (300)
Q Consensus 46 ~~l~g~~VlitR~~--~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~iv--FTS~~av~~~~~~ 119 (300)
.++.+|+||||... . =...+++.|.++|++|+.+-.- . ...+.+.+.. ..+...++. +++..+++.+++.
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~--~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVG--D--RFKDRITEFAAEFGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESS--G--GGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecc--h--hhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHH
Confidence 67889999999865 3 3578999999999987654221 1 1112222222 223333333 4788999999887
Q ss_pred HHHcC-CCCceEEEEc
Q 022234 120 WKEAG-TPNVRIGVVG 134 (300)
Q Consensus 120 l~~~~-~~~~~i~aVG 134 (300)
+.+.. .-+.-|.+.|
T Consensus 86 ~~~~~g~id~lv~nAg 101 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSIG 101 (271)
T ss_dssp HHHHCSCEEEEEECCC
T ss_pred HHHHcCCCCEEEECCc
Confidence 76542 2234444444
No 280
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=44.14 E-value=94 Score=22.92 Aligned_cols=114 Identities=12% Similarity=0.112 Sum_probs=63.2
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC----hHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS----PEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS----~~av~~~~~~l 120 (300)
.++.+++||+.-... ....+...|+..|+++..+ .+..+....+....+|.|++-- .++.+ +...+
T Consensus 3 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~-~~~~l 73 (154)
T 2rjn_A 3 LNYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITF--------TSPLDALEALKGTSVQLVISDMRMPEMGGEV-FLEQV 73 (154)
T ss_dssp -CCSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SCHHHHHHHHTTSCCSEEEEESSCSSSCHHH-HHHHH
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHH-HHHHH
Confidence 346678999887664 3567888888888765421 1223333344455689888742 24444 34445
Q ss_pred HHcCCCCceEEEEccc-hHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 121 KEAGTPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 121 ~~~~~~~~~i~aVG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
.+.. ..++++++... ......+.+..| |.. ++++...+.+.|...+..
T Consensus 74 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~g--~~~-~~l~kP~~~~~L~~~i~~ 122 (154)
T 2rjn_A 74 AKSY-PDIERVVISGYADAQATIDAVNRG--KIS-RFLLKPWEDEDVFKVVEK 122 (154)
T ss_dssp HHHC-TTSEEEEEECGGGHHHHHHHHHTT--CCS-EEEESSCCHHHHHHHHHH
T ss_pred HHhC-CCCcEEEEecCCCHHHHHHHHhcc--chh-eeeeCCCCHHHHHHHHHH
Confidence 5443 35666666443 333333332111 243 355555677778776653
No 281
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=44.07 E-value=1.4e+02 Score=24.88 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=45.0
Q ss_pred CeEEEeCCCC-chHHHHHHHHhC-CCCEEEeee------------eEeeeC--CCchhHHHhhhcCCccEEEEeCh----
Q 022234 51 PKVVVTRERG-KNGKLIKALAKH-RIDCLELPL------------IQHAQG--PDTDRLSSVLNDTIFDWIIITSP---- 110 (300)
Q Consensus 51 ~~VlitR~~~-~~~~l~~~L~~~-G~~v~~~P~------------i~~~~~--~~~~~l~~~l~~~~~d~ivFTS~---- 110 (300)
|+||||...+ -...+++.|.+. |.+|..+-- +++... .|.+.+.+. ....|.||....
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~--~~~~d~vi~~a~~~~~ 78 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEA--FKGMDTVVFIPSIIHP 78 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHH--TTTCSEEEECCCCCCS
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHH--HhCCCEEEEeCCCCcc
Confidence 5799998765 345777788887 888876521 222222 233444444 357899998865
Q ss_pred -----HHHHHHHHHHHHcC
Q 022234 111 -----EAGSVFLEAWKEAG 124 (300)
Q Consensus 111 -----~av~~~~~~l~~~~ 124 (300)
.+.+.+.+.+.+.+
T Consensus 79 ~~~~~~~~~~l~~aa~~~g 97 (289)
T 3e48_A 79 SFKRIPEVENLVYAAKQSG 97 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHcC
Confidence 44566666666654
No 282
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=43.90 E-value=81 Score=27.49 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=51.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeee--CCCchhHHHhhhcCCccEEEEeCh----------HHHHHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ--GPDTDRLSSVLNDTIFDWIIITSP----------EAGSVF 116 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~--~~~~~~l~~~l~~~~~d~ivFTS~----------~av~~~ 116 (300)
.|.+|++..+.- ..+...++..|++++.+|+-.-.. ..|.+.+.+.+...+...|+++++ .-++.+
T Consensus 108 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i 185 (391)
T 3dzz_A 108 PGDQILVQEPVY--NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRI 185 (391)
T ss_dssp TTCEEEECSSCC--HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred CCCeEEECCCCc--HHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHH
Confidence 578899988864 456777888999999999852111 135667777664457888888887 446666
Q ss_pred HHHHHHcC
Q 022234 117 LEAWKEAG 124 (300)
Q Consensus 117 ~~~l~~~~ 124 (300)
.+.+++.+
T Consensus 186 ~~~~~~~~ 193 (391)
T 3dzz_A 186 AELCAKHQ 193 (391)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 66666543
No 283
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=43.82 E-value=62 Score=28.08 Aligned_cols=89 Identities=11% Similarity=0.119 Sum_probs=51.1
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeC-----CCchhHHHh---hhcCCccEEE----EeChHH
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQG-----PDTDRLSSV---LNDTIFDWII----ITSPEA 112 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~-----~~~~~l~~~---l~~~~~d~iv----FTS~~a 112 (300)
..+.||+||||..... ...+++.|.+.|++|+.+-.-+-.+. .+.+.+.+. +.....+..+ +++..+
T Consensus 42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLAS 121 (317)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 4578999999988653 46899999999999887533211100 012222222 2112222332 367888
Q ss_pred HHHHHHHHHHc-CCCCceEEEEc
Q 022234 113 GSVFLEAWKEA-GTPNVRIGVVG 134 (300)
Q Consensus 113 v~~~~~~l~~~-~~~~~~i~aVG 134 (300)
++.+++.+.+. +.-+.-|.+.|
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg 144 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVG 144 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 88888776543 32244444444
No 284
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=43.65 E-value=1.2e+02 Score=24.06 Aligned_cols=106 Identities=22% Similarity=0.202 Sum_probs=63.7
Q ss_pred EEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHHhcccCCCCce
Q 022234 179 TVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTEQWSNS 255 (300)
Q Consensus 179 ~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~~~~~~~~~~~~ 255 (300)
+||++-.+.. +..|...|+..|+.|. .+. ...+.++.+ ..+|+|+....++.+ ++..+... ..+.+
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~al~~l~~~~~dlvilp~~~g~~-~~~~lr~~-~~~~~ 70 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMAD---VTE------SLEDGEYLMDIRNYDLVMVSDKNALS-FVSRIKEK-HSSIV 70 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEE---EES------SHHHHHHHHTTSCCSEEEECCTTHHH-HHHHHHHH-CTTSE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEE---EEC------CHHHHHHHHhcCCCCEEEeCCCCHHH-HHHHHHhC-CCCCc
Confidence 4666655543 6677888888886553 111 122333333 368988843334443 44444433 22567
Q ss_pred EEEeC----HHHHHHHHHcCCCeEEecCCC-CHHHHHHHHHHHHHc
Q 022234 256 VACIG----ETTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALRE 296 (300)
Q Consensus 256 vv~IG----~~Ta~~l~~~G~~~~~v~~~p-~~~~l~~ai~~~~~~ 296 (300)
++.++ +.....+.+.|..- ++.... +.+.|.++|...+..
T Consensus 71 ii~lt~~~~~~~~~~~~~~Ga~~-~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 71 VLVSSDNPTSEEEVHAFEQGADD-YIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSE-EEETTCSCTHHHHHHHHHHTSS
T ss_pred EEEEECCCCHHHHHHHHHcCCCE-EEECCCCCHHHHHHHHHHHhcc
Confidence 76663 44556666789874 667767 899999999887654
No 285
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=43.58 E-value=1.1e+02 Score=23.51 Aligned_cols=121 Identities=4% Similarity=-0.027 Sum_probs=60.3
Q ss_pred HHHHhcccCCCCCCEEEEEcCCCChhHHHHHHH--hCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH-H-H
Q 022234 165 ILASELPKNGKKKCTVLYPASAKASNEIEEGLS--NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-V-R 240 (300)
Q Consensus 165 ~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~--~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~-v-~ 240 (300)
.+++.+... ++-++++++.....+.+.+.++ ..|..- .+...... ..+++...+...|+++++|... . -
T Consensus 40 ~li~a~~~l--~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~-~v~~~g~~----~~~e~~~~~~~adi~v~ps~~e~~~~ 112 (177)
T 2f9f_A 40 LQLEVFKKL--QDEKLYIVGWFSKGDHAERYARKIMKIAPD-NVKFLGSV----SEEELIDLYSRCKGLLCTAKDEDFGL 112 (177)
T ss_dssp HHHHHHHHC--TTSCEEEEBCCCTTSTHHHHHHHHHHHSCT-TEEEEESC----CHHHHHHHHHHCSEEEECCSSCCSCH
T ss_pred HHHHHHHhC--CCcEEEEEecCccHHHHHHHHHhhhcccCC-cEEEeCCC----CHHHHHHHHHhCCEEEeCCCcCCCCh
Confidence 344444443 2346766665555556666655 433210 12222211 1123333345778888866310 0 0
Q ss_pred HHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 241 SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
.+++.+. .++++++........+-+.|..-.++ ..+.++++++|.+.+..++
T Consensus 113 ~~~Eama----~G~PvI~~~~~~~~e~i~~~~~g~~~--~~d~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 113 TPIEAMA----SGKPVIAVNEGGFKETVINEKTGYLV--NADVNEIIDAMKKVSKNPD 164 (177)
T ss_dssp HHHHHHH----TTCCEEEESSHHHHHHCCBTTTEEEE--CSCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHH----cCCcEEEeCCCCHHHHhcCCCccEEe--CCCHHHHHHHHHHHHhCHH
Confidence 1223222 25677776433222222224333344 5689999999999987654
No 286
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=43.45 E-value=1.1e+02 Score=26.70 Aligned_cols=147 Identities=12% Similarity=-0.064 Sum_probs=79.7
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHHhhccCCCccc--cccCCC-CcHHHHHHhcccCCC
Q 022234 100 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSK-ATGKILASELPKNGK 175 (300)
Q Consensus 100 ~~~d~ivFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~--~~~p~~-~~~e~L~~~L~~~~~ 175 (300)
...+.||-. +..........+.+. +++++..+..+...-.+. +... ...|.. ..+..+++.+...
T Consensus 72 ~~v~aiiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~~~l~~~~------~~~~~f~~~~~~~~~~~~~~~~l~~~-- 140 (387)
T 3i45_A 72 HGVHALAGTFLSHVGLAVSDFARQR---KVLFMASEPLTDALTWEK------GNRYTYRLRPSTYMQAAMLAAEAAKL-- 140 (387)
T ss_dssp HCCSEEEECCSHHHHHHHHHHHHHH---TCCEEECSCCCGGGTTTT------CCTTEEECSCCHHHHHHHHHHHHTTS--
T ss_pred cCCEEEECCcchHHHHHHHHHHHHc---CceEEecCCCchhhhhcc------CCCCEEEeCCChHHHHHHHHHHHHHc--
Confidence 478888865 344444555555553 466777665432221111 2211 123332 2345666666654
Q ss_pred CCCEEEEEcCCCC-----hhHHHHHHHhC--CCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEE-ChHHHHHHHHH
Q 022234 176 KKCTVLYPASAKA-----SNEIEEGLSNR--GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA-SPSAVRSWVNL 245 (300)
Q Consensus 176 ~~~~vL~~rg~~~-----~~~L~~~L~~~--G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivft-S~s~v~~~~~~ 245 (300)
+.++|.++..+.. ...+.+.|++. |+.+.....|... ..+....+..+ .++|+|++. +...+..|+..
T Consensus 141 g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~--~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~ 218 (387)
T 3i45_A 141 PITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALY--KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVRE 218 (387)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTT--CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHH
T ss_pred CCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCC--CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHH
Confidence 4578988876542 44677788887 7776544444321 12222233333 478887765 66667777777
Q ss_pred hcccCC-CCceEEEe
Q 022234 246 ISDTEQ-WSNSVACI 259 (300)
Q Consensus 246 ~~~~~~-~~~~vv~I 259 (300)
+.+.+. .+..++..
T Consensus 219 ~~~~g~~~~~~i~~~ 233 (387)
T 3i45_A 219 GRVRGLFAGRQVVSM 233 (387)
T ss_dssp HHHHTSSTTCEEEEE
T ss_pred HHHcCCCCCCeEEee
Confidence 766553 24555543
No 287
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=43.35 E-value=43 Score=29.86 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=42.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeE------------eeeCCCchhHHHhhhcCCccEEEEeChHHHHHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVF 116 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~------------~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~ 116 (300)
.+++|||+........++..++++|++++.+-... ..+..|.+.+.+......+|.|+..+-.....+
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~~~~~~ 89 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDM 89 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCSCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCcCCHHH
Confidence 35899999765456788999999999887654311 111123333333333346788877654332233
Q ss_pred HHHHHH
Q 022234 117 LEAWKE 122 (300)
Q Consensus 117 ~~~l~~ 122 (300)
...+.+
T Consensus 90 ~~~l~~ 95 (391)
T 1kjq_A 90 LIQLEE 95 (391)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 344444
No 288
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=43.34 E-value=98 Score=25.77 Aligned_cols=76 Identities=12% Similarity=0.005 Sum_probs=49.6
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCC--chhHHHhhh-cCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchH
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~--~~~l~~~l~-~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
..-+.+.|+++|..+............+ ...+.+.+. ...+++|+.++-. +..+.+.+.+.+.+++.++..+....
T Consensus 158 ~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~~~ 236 (304)
T 3gbv_A 158 EIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLLER 236 (304)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCCHH
T ss_pred HHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCCHH
Confidence 3456778888887765544433322211 123445553 3578999998888 66677888888877788888876653
No 289
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=43.27 E-value=86 Score=22.23 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh----HHHHHHHHHhcc
Q 022234 176 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSWVNLISD 248 (300)
Q Consensus 176 ~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~----s~v~~~~~~~~~ 248 (300)
.+.+||++..+.. +..+.+.|+..|+.+.. + ....+.++.+ ..+|.|++--. .+.+ ++..+..
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~-~~~~l~~ 75 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVL---A------ADGVDALELLGGFTPDLMICDIAMPRMNGLK-LLEHIRN 75 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEE---E------SCHHHHHHHHTTCCCSEEEECCC-----CHH-HHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEE---e------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHH-HHHHHHh
Confidence 4579999987764 67788889999876532 1 1223334433 36888777422 2232 3333433
Q ss_pred cCCCCceEEEeC----HHHHHHHHHcCCCeEEecCCC-CHHHHHHHHHHHHHc
Q 022234 249 TEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALRE 296 (300)
Q Consensus 249 ~~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p-~~~~l~~ai~~~~~~ 296 (300)
.. .+.+++.++ +.....+.+.|..- ++.... +.+.|.+.+...+..
T Consensus 76 ~~-~~~~ii~~t~~~~~~~~~~~~~~g~~~-~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 76 RG-DQTPVLVISATENMADIAKALRLGVED-VLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp TT-CCCCEEEEECCCCHHHHHHHHHHCCSE-EEESCC---CHHHHHHHHHHC-
T ss_pred cC-CCCCEEEEEcCCCHHHHHHHHHcCCCE-EEeCCCCcHHHHHHHHHHHhch
Confidence 22 345665543 33445566789875 455544 678888888877643
No 290
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=43.15 E-value=98 Score=22.84 Aligned_cols=112 Identities=10% Similarity=0.122 Sum_probs=63.4
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC----hHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS----PEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS----~~av~~~~~~l 120 (300)
....+++||+.-... ....+...|++.|+.+..+ .+..+....+....+|.|++-- .++.+.+ +.+
T Consensus 10 ~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~-~~l 80 (153)
T 3hv2_A 10 TVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFA--------RDATQALQLLASREVDLVISAAHLPQMDGPTLL-ARI 80 (153)
T ss_dssp CCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEE--------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHH-HHH
T ss_pred hccCCceEEEECCCHHHHHHHHHHhcccCcEEEEE--------CCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHH-HHH
Confidence 445578899987764 4567888888888654422 2333333344456799888743 3444443 444
Q ss_pred HHcCCCCceEEEEccc-hHHHHHHHhhccCCC-ccccccCCCCcHHHHHHhcc
Q 022234 121 KEAGTPNVRIGVVGAG-TASIFEEVIQSSKCS-LDVAFSPSKATGKILASELP 171 (300)
Q Consensus 121 ~~~~~~~~~i~aVG~~-Ta~~L~~~~~~~~~G-~~~~~~p~~~~~e~L~~~L~ 171 (300)
++.. .+.+++++... ......+.+.. | .. +++....+.+.|...+.
T Consensus 81 ~~~~-~~~~ii~~s~~~~~~~~~~~~~~---g~~~-~~l~KP~~~~~l~~~i~ 128 (153)
T 3hv2_A 81 HQQY-PSTTRILLTGDPDLKLIAKAINE---GEIY-RYLSKPWDDQELLLALR 128 (153)
T ss_dssp HHHC-TTSEEEEECCCCCHHHHHHHHHT---TCCS-EEECSSCCHHHHHHHHH
T ss_pred HhHC-CCCeEEEEECCCCHHHHHHHHhC---CCcc-eEEeCCCCHHHHHHHHH
Confidence 4433 35666666543 33333332211 4 43 45666677788877664
No 291
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=43.13 E-value=20 Score=27.83 Aligned_cols=64 Identities=9% Similarity=0.165 Sum_probs=39.3
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCCEEE------------eeeeEeeeCCC--c----hhHHHhhhcCCccE
Q 022234 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLE------------LPLIQHAQGPD--T----DRLSSVLNDTIFDW 104 (300)
Q Consensus 46 ~~l~g~~VlitR~~---~~~~~l~~~L~~~G~~v~~------------~P~i~~~~~~~--~----~~l~~~l~~~~~d~ 104 (300)
.|..| |+++-.. +.-.++++.|.+.|++++. +|+-.+...++ . .++.+.+..+.+|.
T Consensus 22 lP~~g--vliSv~d~dK~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~l 99 (143)
T 2yvq_A 22 IPQKG--ILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDL 99 (143)
T ss_dssp CCCSE--EEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCE
T ss_pred CCCCC--EEEEecccchHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceE
Confidence 34456 6666333 2234678888888887763 44444444322 1 34555567789999
Q ss_pred EEEeChH
Q 022234 105 IIITSPE 111 (300)
Q Consensus 105 ivFTS~~ 111 (300)
||+|...
T Consensus 100 VInt~~~ 106 (143)
T 2yvq_A 100 VINLPNN 106 (143)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999765
No 292
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=42.95 E-value=99 Score=22.82 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHHhccc
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDT 249 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS----~s~v~~~~~~~~~~ 249 (300)
..+||++..+.. +..|.+.|+..|+.|. ++. ...+.++.+ ..+|+|++-- ..+.+ ++..+...
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~-~~~~l~~~ 83 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLH---FAR------DATQALQLLASREVDLVISAAHLPQMDGPT-LLARIHQQ 83 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEE---EES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHH-HHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEE---EEC------CHHHHHHHHHcCCCCEEEEeCCCCcCcHHH-HHHHHHhH
Confidence 468999987764 6778888988885542 111 122233322 4788888742 12333 33333332
Q ss_pred CCCCceEEEeCH----HHHHHHHHcC-CCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 250 EQWSNSVACIGE----TTASAAKRLG-LKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 250 ~~~~~~vv~IG~----~Ta~~l~~~G-~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
..+++++.++. .....+.+.| ... ++....+.+.|.++|...+..
T Consensus 84 -~~~~~ii~~s~~~~~~~~~~~~~~g~~~~-~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 84 -YPSTTRILLTGDPDLKLIAKAINEGEIYR-YLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp -CTTSEEEEECCCCCHHHHHHHHHTTCCSE-EECSSCCHHHHHHHHHHHHHH
T ss_pred -CCCCeEEEEECCCCHHHHHHHHhCCCcce-EEeCCCCHHHHHHHHHHHHHH
Confidence 13567776643 3445566678 664 667777999999999877653
No 293
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=42.83 E-value=17 Score=31.78 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=24.8
Q ss_pred CCCCCeEEEeCCCC--c------hHHHHHHHHhCCCCEEEeeeeEe
Q 022234 47 SNSNPKVVVTRERG--K------NGKLIKALAKHRIDCLELPLIQH 84 (300)
Q Consensus 47 ~l~g~~VlitR~~~--~------~~~l~~~L~~~G~~v~~~P~i~~ 84 (300)
-+..|+|||.-..+ + .+.+.+.|++.|.+|..+-++..
T Consensus 19 ~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~ 64 (280)
T 4gi5_A 19 YFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAM 64 (280)
T ss_dssp ---CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred hhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 35568888763332 2 35567888999999988877653
No 294
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=42.71 E-value=94 Score=22.49 Aligned_cols=108 Identities=9% Similarity=0.053 Sum_probs=61.3
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC----hHHHHHHHHHHHHc
Q 022234 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS----PEAGSVFLEAWKEA 123 (300)
Q Consensus 49 ~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS----~~av~~~~~~l~~~ 123 (300)
...+||+.-... ....+...|++.|+++... .+..+..+.+....+|.|+.-- .++.+.+ +.+++.
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~-~~lr~~ 73 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRA--------ASGEEALQQIYKNLPDALICDVLLPGIDGYTLC-KRVRQH 73 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHH-HHHHHS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHH-HHHHcC
Confidence 457898887654 3567888898889865422 1223333334456789888742 3455544 445443
Q ss_pred C-CCCceEEEEc-cchHHH---HHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 124 G-TPNVRIGVVG-AGTASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 124 ~-~~~~~i~aVG-~~Ta~~---L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
. ..+.+++.+. ...... ..+. |.. +++...++.+.|...+..
T Consensus 74 ~~~~~~pii~~t~~~~~~~~~~~~~~------ga~-~~l~KP~~~~~L~~~i~~ 120 (136)
T 3t6k_A 74 PLTKTLPILMLTAQGDISAKIAGFEA------GAN-DYLAKPFEPQELVYRVKN 120 (136)
T ss_dssp GGGTTCCEEEEECTTCHHHHHHHHHH------TCS-EEEETTCCHHHHHHHHHH
T ss_pred CCcCCccEEEEecCCCHHHHHHHHhc------Ccc-eEEeCCCCHHHHHHHHHH
Confidence 2 2355665554 333332 2334 554 355666778888777654
No 295
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=42.63 E-value=77 Score=26.77 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEee
Q 022234 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLELP 80 (300)
Q Consensus 48 l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P 80 (300)
+.||++|||..... ...+++.|.+.|++|+..-
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~ 42 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALG 42 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 57999999987653 4689999999999998653
No 296
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=42.31 E-value=56 Score=27.49 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=41.0
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccCCCCceE-EEeCHHHHHHHHHcCCCe
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTEQWSNSV-ACIGETTASAAKRLGLKN 274 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~~~~~~v-v~IG~~Ta~~l~~~G~~~ 274 (300)
.+.+.|-+-|++++..|.+.+.+.. .++++ +.-|..|++.++++|++.
T Consensus 25 ~~g~~IglgsGST~~~~i~~L~~~~-~~itv~VtnS~~~a~~l~~~gi~l 73 (224)
T 3kwm_A 25 TTEITLGVGTGSTVGFLIEELVNYR-DKIKTVVSSSEDSTRKLKALGFDV 73 (224)
T ss_dssp CSSEEEEECCSHHHHHHHHHGGGCT-TTEEEEEESCHHHHHHHHHTTCCB
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhc-CceEEEECCcHHHHHHHHHcCCeE
Confidence 5678999999999999999997642 36777 889999999999999875
No 297
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=42.28 E-value=16 Score=31.97 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=47.1
Q ss_pred CEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeeeeCCCC-----------------------------c--
Q 022234 178 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----------------------------D-- 218 (300)
Q Consensus 178 ~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----------------------------~-- 218 (300)
-|||++-+--. .+...+.|++.|.+|+.+.+|.....+.. .
T Consensus 23 MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 102 (280)
T 4gi5_A 23 MKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSAD 102 (280)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcHH
Confidence 57887765422 34567889999999999999986543211 0
Q ss_pred -HHHHHHcCCCCEEEEEC-------hHHHHHHHHHhc
Q 022234 219 -QTVLKQALSIPVVAVAS-------PSAVRSWVNLIS 247 (300)
Q Consensus 219 -~~~~~~l~~~d~IvftS-------~s~v~~~~~~~~ 247 (300)
.+..+.+...|.|||.+ |..++.|++.+-
T Consensus 103 v~~~~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~ 139 (280)
T 4gi5_A 103 IVAEQEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVY 139 (280)
T ss_dssp HHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCEEEEEeccccccCcHHHHHHHHHhc
Confidence 11122244678888876 689999999863
No 298
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=42.03 E-value=1.2e+02 Score=26.80 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=42.6
Q ss_pred CCCEEEEEC---------hHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHH-cCCCeEE----ecC-CCCHHHHHHHHH
Q 022234 227 SIPVVAVAS---------PSAVRSWVNLISDTEQWSNSVACIGETTASAAKR-LGLKNVY----YPT-HPGLEGWVDSIL 291 (300)
Q Consensus 227 ~~d~IvftS---------~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~-~G~~~~~----v~~-~p~~~~l~~ai~ 291 (300)
+..+|+||| .+.++...+.+.+ . .+..+++||.+..+.+++ .|..+.. ..+ .|+.+...+...
T Consensus 104 ~~~~IvitSDrGLCG~fNsni~k~~~~~i~~-~-~g~~l~~VG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~ 181 (311)
T 2xok_G 104 KELIVAITSDKGLCGSIHSQLAKAVRRHLND-Q-PNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIAD 181 (311)
T ss_dssp CEEEEEECCSCCSSTTHHHHHHHHHHHSSSS-C-TTCEEEEESHHHHHHHHTTSTTTEEEEEESCTTSCCCHHHHHHHHH
T ss_pred ceEEEEEeCCCcccchhhHHHHHHHHHHHHh-c-CCCEEEEechHHHHHHHHhcCCCeEEEecccCCCCCCHHHHHHHHH
Confidence 445899999 7778877766654 1 122399999999999998 5887532 224 678775444333
No 299
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=41.93 E-value=69 Score=26.75 Aligned_cols=75 Identities=8% Similarity=-0.029 Sum_probs=44.3
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEE----EeChHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWII----ITSPEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~iv----FTS~~av~~~~~~l 120 (300)
..+.|+++|||..... ...+++.|.++|++|+..--. .....+...+.+.....+..+ +++..+++.+++.+
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNG---AAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAA 80 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS---SCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC---CHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 3578999999988754 468999999999988653110 000011122222111112222 37788888888876
Q ss_pred HHc
Q 022234 121 KEA 123 (300)
Q Consensus 121 ~~~ 123 (300)
.+.
T Consensus 81 ~~~ 83 (259)
T 3edm_A 81 ADK 83 (259)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 300
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=41.83 E-value=1.9e+02 Score=25.74 Aligned_cols=167 Identities=12% Similarity=0.086 Sum_probs=90.9
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHHcCCCC
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKEAGTPN 127 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~~~~~ 127 (300)
..++||++.+-. ++..+.|++. +++...+. ....+.+++.+ ...++|.++..+..-+ +.+++.+. ++
T Consensus 27 ~~~kvlv~~~~~--~~~~~~l~~~-~~v~~~~~---~~~~~~~~l~~--~~~~~d~li~~~~~~i~~~~l~~~~----~~ 94 (345)
T 4g2n_A 27 PIQKAFLCRRFT--PAIEAELRQR-FDLEVNLE---DTVLTPSGIAS--RAHGAEVLFVTATEAITAEVIRKLQ----PG 94 (345)
T ss_dssp CCCEEEESSCCC--HHHHHHHHHH-SEEEECTT---CCCCCHHHHHH--HTTTCSEEEECTTSCBCHHHHHHTT----TT
T ss_pred CCCEEEEeCCCC--HHHHHHHHcc-CCEEEecC---CCCCCHHHHHH--HhcCCeEEEEeCCCCCCHHHHHhhc----CC
Confidence 467899998765 4566777765 45443221 11112233333 3578999987653322 22333221 24
Q ss_pred ceEEE-Eccch----HHHHHHHhhccCCCccccccCCCCcHHHHHHhc-------c-------------c----------
Q 022234 128 VRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------P-------------K---------- 172 (300)
Q Consensus 128 ~~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L-------~-------------~---------- 172 (300)
+|+++ .|..+ .+++++. |+.+...|. .+++..++.- . .
T Consensus 95 Lk~I~~~~~G~D~id~~~a~~~------gI~V~n~pg-~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~ 167 (345)
T 4g2n_A 95 LKTIATLSVGYDHIDMAAARSL------GIKVLHTPD-VLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLL 167 (345)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCCS-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTC
T ss_pred ceEEEEcCCcccccCHHHHHhC------CEEEEECCc-ccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCccccc
Confidence 55544 23222 4677888 999877774 3433333221 0 0
Q ss_pred -CCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCC-------CcHHHHHHcCCCCEEEEEChH
Q 022234 173 -NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-------VDQTVLKQALSIPVVAVASPS 237 (300)
Q Consensus 173 -~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~-------~~~~~~~~l~~~d~IvftS~s 237 (300)
....|+++.+++-..-...+...|+..|.+|. .|.+.+... ....+.+.+...|+|++.-|.
T Consensus 168 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~---~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Pl 237 (345)
T 4g2n_A 168 GMGLTGRRLGIFGMGRIGRAIATRARGFGLAIH---YHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPG 237 (345)
T ss_dssp BCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEE---EECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCC
T ss_pred ccccCCCEEEEEEeChhHHHHHHHHHHCCCEEE---EECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCC
Confidence 11357889999776666778899999997654 454432110 001122223467888887764
No 301
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=41.79 E-value=91 Score=22.10 Aligned_cols=112 Identities=7% Similarity=0.076 Sum_probs=64.8
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh----HHHHHHHHHHHHc
Q 022234 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP----EAGSVFLEAWKEA 123 (300)
Q Consensus 49 ~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~----~av~~~~~~l~~~ 123 (300)
.+++||+.-... ....+...|++.|+.+... .+..+....+....+|.|++--. ++.+ +.+.+++.
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~-~~~~l~~~ 75 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIA--------HNGFDAGIKLSTFEPAIMTLDLSMPKLDGLD-VIRSLRQN 75 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHHTCCSEEEEESCBTTBCHHH-HHHHHHTT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHhcCCCEEEEecCCCCCCHHH-HHHHHHhc
Confidence 367899887664 4567888899888865432 12233333344567898877532 3444 44455554
Q ss_pred CC-CCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 124 GT-PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 124 ~~-~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
.. ...+++.++........+.+.. |.. +++....+.+.|.+.+...
T Consensus 76 ~~~~~~~ii~~~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~l~~~i~~~ 122 (132)
T 3lte_A 76 KVANQPKILVVSGLDKAKLQQAVTE---GAD-DYLEKPFDNDALLDRIHDL 122 (132)
T ss_dssp TCSSCCEEEEECCSCSHHHHHHHHH---TCC-EEECSSCCHHHHHHHHHHH
T ss_pred CccCCCeEEEEeCCChHHHHHHHHh---ChH-HHhhCCCCHHHHHHHHHHH
Confidence 32 4567777765443333332211 544 4566677888888887654
No 302
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=41.78 E-value=28 Score=30.17 Aligned_cols=82 Identities=12% Similarity=-0.060 Sum_probs=46.3
Q ss_pred CCCCCccccccccccccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcC-CccE
Q 022234 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDT-IFDW 104 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~-~~d~ 104 (300)
|-.++-++...+ ..|.||.+|||....+ ...+++.|.+.|+.|+..-. +.+.+.+.. +++ ..-.
T Consensus 13 ~~~~n~~~~~Ms------~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r-------~~~~l~~~~~~~g~~~~~ 79 (273)
T 4fgs_A 13 LGTENLYFQSMT------QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGR-------RKDVLDAAIAEIGGGAVG 79 (273)
T ss_dssp ------------------CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES-------CHHHHHHHHHHHCTTCEE
T ss_pred ccccccchhhhc------chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEEC-------CHHHHHHHHHHcCCCeEE
Confidence 334555565544 6799999999987653 46899999999999876432 223343333 222 2212
Q ss_pred EE--EeChHHHHHHHHHHHH
Q 022234 105 II--ITSPEAGSVFLEAWKE 122 (300)
Q Consensus 105 iv--FTS~~av~~~~~~l~~ 122 (300)
+. .|+..+++.+++...+
T Consensus 80 ~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 80 IQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp EECCTTCHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHH
Confidence 11 4788899888887654
No 303
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=41.70 E-value=94 Score=22.25 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC----hHHHHHHHHHHHHcC
Q 022234 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS----PEAGSVFLEAWKEAG 124 (300)
Q Consensus 50 g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS----~~av~~~~~~l~~~~ 124 (300)
+.+||+.-... ....+...|++.|..+..+. +..+....+....+|.|++-- .++.+. .+.+++..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~--------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~-~~~l~~~~ 77 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAG--------DGEEGERLFGLHAPDVIITDIRMPKLGGLEM-LDRIKAGG 77 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEES--------SHHHHHHHHHHHCCSEEEECSSCSSSCHHHH-HHHHHHTT
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEEC--------CHHHHHHHHhccCCCEEEEeCCCCCCCHHHH-HHHHHhcC
Confidence 56888887764 44678888888777654332 223333334445788887753 234444 44555543
Q ss_pred CCCceEEEEccch-HH---HHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 125 TPNVRIGVVGAGT-AS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 125 ~~~~~i~aVG~~T-a~---~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
.+.+++++.... .+ .+.+. |.. ++++...+.+.|.+.+..
T Consensus 78 -~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~ 121 (137)
T 3hdg_A 78 -AKPYVIVISAFSEMKYFIKAIEL------GVH-LFLPKPIEPGRLMETLED 121 (137)
T ss_dssp -CCCEEEECCCCCCHHHHHHHHHH------CCS-EECCSSCCHHHHHHHHHH
T ss_pred -CCCcEEEEecCcChHHHHHHHhC------Ccc-eeEcCCCCHHHHHHHHHH
Confidence 467777765443 22 33344 654 356666788888877754
No 304
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=41.52 E-value=69 Score=27.74 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=55.2
Q ss_pred CCCeEEEeCCCCc-----hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEE-eChHHHHHHHHHHHH
Q 022234 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIII-TSPEAGSVFLEAWKE 122 (300)
Q Consensus 49 ~g~~VlitR~~~~-----~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivF-TS~~av~~~~~~l~~ 122 (300)
..++|.+..+... .+.+.+.++++|+++...-.+.... .+.......+.....|.|++ .+......+++++.+
T Consensus 138 g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~-~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~ 216 (368)
T 4eyg_A 138 GIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLAN-PDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAE 216 (368)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSS-CCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC-CcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHH
Confidence 3467776654321 4567788899998876543332221 23333322233356888887 666677777788888
Q ss_pred cCCC--CceEEEEcc-chHHHHHH
Q 022234 123 AGTP--NVRIGVVGA-GTASIFEE 143 (300)
Q Consensus 123 ~~~~--~~~i~aVG~-~Ta~~L~~ 143 (300)
.+.. +++++..+. .+...++.
T Consensus 217 ~g~~~~~v~~~~~~~~~~~~~~~~ 240 (368)
T 4eyg_A 217 RGLDKSGIKVIGPGDVMDDDLLNS 240 (368)
T ss_dssp TTGGGTTCEEEEETTTTCHHHHTT
T ss_pred cCCCcCCceEEecCcccCHHHHHh
Confidence 7764 267777663 34444443
No 305
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=41.50 E-value=24 Score=32.28 Aligned_cols=162 Identities=11% Similarity=0.098 Sum_probs=88.2
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH-HHHHHHHHHcCCCCc
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG-SVFLEAWKEAGTPNV 128 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av-~~~~~~l~~~~~~~~ 128 (300)
.|+|+++...+. ..+.|++.| ++...|-.. . ..+ ...++|.++..|..-+ +.+++ . .++
T Consensus 3 mmkIl~~~~~p~---~~~~~~~~~-~v~~~~~~~---~-~~~------~l~~ad~li~~~~~~v~~~ll~-----~-~~L 62 (381)
T 3oet_A 3 AMKILVDENMPY---ARELFSRLG-EVKAVPGRP---I-PVE------ELNHADALMVRSVTKVNESLLS-----G-TPI 62 (381)
T ss_dssp CCEEEEETTSTT---HHHHHTTSS-EEEEECC-------CHH------HHTTCSEEEECTTSCBSHHHHT-----T-SCC
T ss_pred ceEEEECCCCcH---HHHHHhhCC-cEEEeCCCC---C-CHH------HHCCCEEEEECCCCCCCHHHHc-----C-CCC
Confidence 489999876643 346666666 554433211 1 111 2468899988664333 22222 1 235
Q ss_pred eEEE-Eccch----HHHHHHHhhccCCCccccccCCCCcHHHHHHh-------ccc---CCCCCCEEEEEcCCCChhHHH
Q 022234 129 RIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPK---NGKKKCTVLYPASAKASNEIE 193 (300)
Q Consensus 129 ~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L~~---~~~~~~~vL~~rg~~~~~~L~ 193 (300)
|+++ .|.++ .+++++. |+.+...|. .+++..++. +.+ ....|+++.+++-..-...+.
T Consensus 63 k~I~~~~~G~D~iD~~~~~~~------gI~v~n~pg-~~~~~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~vA 135 (381)
T 3oet_A 63 NFVGTATAGTDHVDEAWLKQA------GIGFSAAPG-CNAIAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRLQ 135 (381)
T ss_dssp CEEEESSSCCTTBCHHHHHHT------TCEEECCTT-TTHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHH
T ss_pred EEEEEccccccccCHHHHHhC------CEEEEECCC-cCcchhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHHHHHHH
Confidence 5444 33322 3577888 998876665 344433332 111 123678999997766667789
Q ss_pred HHHHhCCCeeEEEEeeeeee-CCCCcHHHHHHcCCCCEEEEEChHH
Q 022234 194 EGLSNRGFEVVRLNTYTTEP-VHHVDQTVLKQALSIPVVAVASPSA 238 (300)
Q Consensus 194 ~~L~~~G~~v~~~~vY~~~~-~~~~~~~~~~~l~~~d~IvftS~s~ 238 (300)
..|+..|++|..+..+.... .......+.+.+...|+|++.-|.+
T Consensus 136 ~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt 181 (381)
T 3oet_A 136 TRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLY 181 (381)
T ss_dssp HHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCC
T ss_pred HHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCC
Confidence 99999998765443332111 0011111222234678888877654
No 306
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=41.44 E-value=90 Score=21.94 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=65.4
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHHhcccC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDTE 250 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS----~s~v~~~~~~~~~~~ 250 (300)
++||++-.+.. +..+...|+..|+.|.. +. ...+.++.+ ..+|.|++-- .++.+ ++..+...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlii~D~~~p~~~g~~-~~~~lr~~- 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHC---AH------DGNEAVEMVEELQPDLILLDIMLPNKDGVE-VCREVRKK- 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHTTCCSEEEEETTSTTTHHHH-HHHHHHTT-
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEE---eC------CHHHHHHHHhhCCCCEEEEeCCCCCCCHHH-HHHHHHhc-
Confidence 58888877654 67788889988865521 11 122333332 4788877742 24444 34444432
Q ss_pred CCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 251 QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 251 ~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
.+.+++.++ ......+.+.|..- ++....+.+.+...+...++.
T Consensus 72 -~~~~ii~~t~~~~~~~~~~~~~~ga~~-~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 72 -YDMPIIMLTAKDSEIDKVIGLEIGADD-YVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp -CCSCEEEEEESSCHHHHHHHHHTTCCE-EEEESCCHHHHHHHHHHHHTC
T ss_pred -CCCCEEEEECCCChHHHHHHHhCCcce-eEcCCCCHHHHHHHHHHHHhc
Confidence 245555542 34455566788864 667777999999999887753
No 307
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=41.31 E-value=97 Score=22.28 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=62.9
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC----hHHHHHHHHHHHHc-
Q 022234 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS----PEAGSVFLEAWKEA- 123 (300)
Q Consensus 50 g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS----~~av~~~~~~l~~~- 123 (300)
.++||+.-... ....+...|++.|+++..+ .+..+..+.+....+|.|++-- .++.+.+ +.+++.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~-~~l~~~~ 76 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMV--------HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLI-RALRRDS 76 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHH-HHHHTSG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEE--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHH-HHHHhCc
Confidence 57899887664 4567888899989765332 1333333344456789888742 3444443 445542
Q ss_pred CCCCceEEEEccchHHHH-H-HHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 124 GTPNVRIGVVGAGTASIF-E-EVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 124 ~~~~~~i~aVG~~Ta~~L-~-~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
...+.+++.+........ . +.+. .|.. +++....+.+.|...+..
T Consensus 77 ~~~~~~ii~~s~~~~~~~~~~~~~~---~g~~-~~l~kP~~~~~l~~~i~~ 123 (140)
T 3grc_A 77 RTRDLAIVVVSANAREGELEFNSQP---LAVS-TWLEKPIDENLLILSLHR 123 (140)
T ss_dssp GGTTCEEEEECTTHHHHHHHHCCTT---TCCC-EEECSSCCHHHHHHHHHH
T ss_pred ccCCCCEEEEecCCChHHHHHHhhh---cCCC-EEEeCCCCHHHHHHHHHH
Confidence 234678888766544332 2 2211 1433 345556677888776653
No 308
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=41.17 E-value=89 Score=21.77 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=61.1
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe-----ChHHHHHHHHHHHHc
Q 022234 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT-----SPEAGSVFLEAWKEA 123 (300)
Q Consensus 50 g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT-----S~~av~~~~~~l~~~ 123 (300)
.++||+.-... ....+...|++.|+++... .+..+....+....+|.|++- ..++.+ +.+.+++.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~-~~~~l~~~ 75 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDET--------TDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYL-ICGKLKKD 75 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEE--------CCHHHHHHHHHHHCCSEEEEESBCGGGCBHHH-HHHHHHHS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEe--------cCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHH-HHHHHhcC
Confidence 35788886654 4567888888888865421 122333333334568988874 224443 44555554
Q ss_pred C-CCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 124 G-TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 124 ~-~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
. ..+.++++++........+.+.. |.. ++.+...+.+.|.+.+..
T Consensus 76 ~~~~~~~ii~~~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~l~~~i~~ 121 (127)
T 2gkg_A 76 DDLKNVPIVIIGNPDGFAQHRKLKA---HAD-EYVAKPVDADQLVERAGA 121 (127)
T ss_dssp TTTTTSCEEEEECGGGHHHHHHSTT---CCS-EEEESSCCHHHHHHHHHH
T ss_pred ccccCCCEEEEecCCchhHHHHHHh---Ccc-hheeCCCCHHHHHHHHHH
Confidence 2 34677777755444444443211 433 345555677777776643
No 309
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=41.11 E-value=86 Score=26.59 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=27.7
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
.++.|++||||..... ...+++.|.++|++|+.+
T Consensus 12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~ 46 (291)
T 3rd5_A 12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMA 46 (291)
T ss_dssp CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 4688999999988653 468999999999987654
No 310
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=41.02 E-value=1.8e+02 Score=25.21 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=88.0
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCCEEEeeee------EeeeCCCchhHHHhhhcCC-ccEE-EEeChHHHHHHHHHHH
Q 022234 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLI------QHAQGPDTDRLSSVLNDTI-FDWI-IITSPEAGSVFLEAWK 121 (300)
Q Consensus 51 ~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i------~~~~~~~~~~l~~~l~~~~-~d~i-vFTS~~av~~~~~~l~ 121 (300)
.+|+|....+ ......+.+.+.|++ ...|+- ++...+-++.+.+...... .|.+ +||.+..+....+.+.
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~~v~ea~ 92 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAV 92 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHHHHHHHH
Confidence 3466655433 245577788888987 333321 1111111123333332113 6755 5888888888888777
Q ss_pred HcCCCCceEEEEcc---------chHHHHHHHhhccCCCccccccCCCC---cH-HHHHHhcccCCCCCCEEEEE-cCCC
Q 022234 122 EAGTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYP-ASAK 187 (300)
Q Consensus 122 ~~~~~~~~i~aVG~---------~Ta~~L~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~L~~~~~~~~~vL~~-rg~~ 187 (300)
+.+ ++.++++. .-.+.+++. |+.. +.|... +. ..+...++......++|-++ ++..
T Consensus 93 ~~G---i~~vVi~t~G~~~~~~~~l~~~A~~~------gi~v-iGPNc~Gii~~~~~~~~~~~~~~~~~G~va~vSqSG~ 162 (297)
T 2yv2_A 93 DAG---IRLVVVITEGIPVHDTMRFVNYARQK------GATI-IGPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGT 162 (297)
T ss_dssp HTT---CSEEEECCCCCCHHHHHHHHHHHHHH------TCEE-ECSSSCEEEETTTEEEESCCGGGCCEEEEEEEESCHH
T ss_pred HCC---CCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EcCCCCeeEcccccceeecccCCCCCCCEEEEECCHH
Confidence 764 45333322 234455566 7753 233311 11 11111122221223456555 4433
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeeeC-CCCcHHHHHHc---CCCCEEEEECh
Q 022234 188 ASNEIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASP 236 (300)
Q Consensus 188 ~~~~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~l---~~~d~IvftS~ 236 (300)
-...+.+.+..+|+-+..+.-.-.... ..+..++++.+ .+-++|+++.-
T Consensus 163 l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E 215 (297)
T 2yv2_A 163 LTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGE 215 (297)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEC
T ss_pred HHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 355677788888888877776666553 23334555544 24556776643
No 311
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=41.00 E-value=35 Score=30.57 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=53.1
Q ss_pred CCEEEEEcCC-CC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEECh-------HHHHHHH
Q 022234 177 KCTVLYPASA-KA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWV 243 (300)
Q Consensus 177 ~~~vL~~rg~-~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~-------s~v~~~~ 243 (300)
..+++++-+. .+ .+.+.+.|.+.|+++..+.+.+ .....+...+...|.|+|.|| ..++.|+
T Consensus 256 ~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~-----~~~~~~~~~l~~~d~iiigsP~y~~~~~~~~k~~l 330 (404)
T 2ohh_A 256 DERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHE-----DDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLL 330 (404)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTT-----SCHHHHHHHHHTCSEEEEECCEETTEECTHHHHHH
T ss_pred CCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCC-----CCHHHHHHHHHHCCEEEEECccccccchHHHHHHH
Confidence 3465555433 33 3356667777787665444322 122334445668999999998 5789998
Q ss_pred HHhcccCC---CCceEEEeC---------HHHHHHHHHcCCCe
Q 022234 244 NLISDTEQ---WSNSVACIG---------ETTASAAKRLGLKN 274 (300)
Q Consensus 244 ~~~~~~~~---~~~~vv~IG---------~~Ta~~l~~~G~~~ 274 (300)
+.+..... .+.+++++| ....+.+...|+.+
T Consensus 331 d~l~~~~~~~l~~k~~~~~~~~g~~~~a~~~l~~~l~~~g~~~ 373 (404)
T 2ohh_A 331 MYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDV 373 (404)
T ss_dssp HHHHHHCGGGTCCEEEEEEEEESSSCCHHHHHHHHHHHTTEEE
T ss_pred HHhhhccccccCCCEEEEEEecCCCChhHHHHHHHHHHCCCEE
Confidence 87653221 344444331 23455666678865
No 312
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=40.93 E-value=72 Score=31.54 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=57.2
Q ss_pred CCCCCCeEEEeCC--CC----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-H------
Q 022234 46 ASNSNPKVVVTRE--RG----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-A------ 112 (300)
Q Consensus 46 ~~l~g~~VlitR~--~~----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-a------ 112 (300)
..+.|++|+|.-. .+ ....+.+.|++.|++|..+-.-. ....|. .+.. .....||+||+.... +
T Consensus 525 ~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~-g~~vD~-t~~~-~~s~~fDAVvlPGG~~g~~~~~~ 601 (688)
T 2iuf_A 525 AKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERX-ANNVDE-TYSA-SDAVQFDAVVVADGAEGLFGADS 601 (688)
T ss_dssp SCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSC-CTTCCE-ESTT-CCGGGCSEEEECTTCGGGCCTTT
T ss_pred CCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccC-Cccccc-chhc-CCccccCeEEecCCCcccccccc
Confidence 4588999998876 32 34577889999999998765521 111121 1111 123579999998873 2
Q ss_pred -------------------HHHHHHHHHHcCCCCceEEEEccchHHHHHHH
Q 022234 113 -------------------GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 144 (300)
Q Consensus 113 -------------------v~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 144 (300)
+..|....-+ .+..|++||.+.. .|.+.
T Consensus 602 ~~~~~~~~~~~~~L~~~~~~~~~v~~~~~---~gKpIaAIc~ap~-vL~~a 648 (688)
T 2iuf_A 602 FTVEPSAGSGASTLYPAGRPLNILLDAFR---FGKTVGALGSGSD-ALESG 648 (688)
T ss_dssp TTCCCCTTSCCCSSSCTTHHHHHHHHHHH---HTCEEEEEGGGHH-HHHHT
T ss_pred cccccccccchhhcccChHHHHHHHHHHH---cCCEEEEECchHH-HHHHc
Confidence 2222222222 2678999998864 88888
No 313
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=40.14 E-value=20 Score=30.70 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=30.8
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcC-CCCceEEEEccch----HHHHHHH
Q 022234 100 TIFDWIIITSPEAGSVFLEAWKEAG-TPNVRIGVVGAGT----ASIFEEV 144 (300)
Q Consensus 100 ~~~d~ivFTS~~av~~~~~~l~~~~-~~~~~i~aVG~~T----a~~L~~~ 144 (300)
-+.|.+||.|||++.---...++.. -.++++++||..- .+.|++.
T Consensus 63 ~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~kd~l~~~ 112 (283)
T 1qv9_A 63 FEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQ 112 (283)
T ss_dssp HCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGGHHHHHHT
T ss_pred cCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchhhHHHHHhc
Confidence 3789999999997754443333321 1477888887765 6777777
No 314
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=40.11 E-value=1.1e+02 Score=22.48 Aligned_cols=111 Identities=10% Similarity=0.086 Sum_probs=65.6
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHHhcccCC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDTEQ 251 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~---s~v~~~~~~~~~~~~ 251 (300)
.+||++..+.. +..|.+.|+..|.. ..+..+. ...+.++.+ ..+|+|++--. ...-.++..+....
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~------~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~- 92 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDV-ESVLQAK------NGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEK- 92 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEES------SHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTT-
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEEC------CHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhC-
Confidence 47898887764 66778888877622 1122211 122334333 36888777421 12223444444322
Q ss_pred CCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 252 WSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 252 ~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
.+.+++.++ +.....+.+.|..- ++....+.+.|.++|...+...
T Consensus 93 ~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 93 LETKVVVVTTFKRAGYFERAVKAGVDA-YVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTTCSE-EEETTSCHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCCCHHHHHHHHHCCCcE-EEecCCCHHHHHHHHHHHHcCC
Confidence 356666653 33556677789874 6677779999999999887654
No 315
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=40.09 E-value=44 Score=26.51 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=44.9
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHH--------HHHHHHH
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSV--------FLEAWKE 122 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~--------~~~~l~~ 122 (300)
|+|+|..-.+.-..+.+.|++.|+++..+|. + + .+..+|.||++-...-.. +.+.+.
T Consensus 1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~------~--~------~~~~~dglil~GG~~~~~~~~~~~~~~~~~i~- 65 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKR------V--E------DLEGIDALIIPGGESTAIGKLMKKYGLLEKIK- 65 (186)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTSEEEEECS------G--G------GGTTCSEEEECCSCHHHHHHHHHHTTHHHHHH-
T ss_pred CEEEEEecCcchHHHHHHHHHCCCEEEEECC------h--H------HhccCCEEEECCCCchhhhhhhhccCHHHHHH-
Confidence 5788876555556778999999998776652 1 1 245689999998744221 222222
Q ss_pred cCCCCceEEEEccch
Q 022234 123 AGTPNVRIGVVGAGT 137 (300)
Q Consensus 123 ~~~~~~~i~aVG~~T 137 (300)
..+.+++.|.-.-
T Consensus 66 --~~~~PilGIC~G~ 78 (186)
T 2ywj_A 66 --NSNLPILGTCAGM 78 (186)
T ss_dssp --TCCCCEEEETHHH
T ss_pred --hcCCcEEEECHHH
Confidence 2367788777664
No 316
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=40.06 E-value=61 Score=24.45 Aligned_cols=63 Identities=24% Similarity=0.264 Sum_probs=38.7
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH--------HHHHHHHHHHc--CCCCceEE
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA--------GSVFLEAWKEA--GTPNVRIG 131 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a--------v~~~~~~l~~~--~~~~~~i~ 131 (300)
++.+++.|.+.|+++..++. .+.. .+..+|.|+|-++.- ++.|++.+... ...+.+++
T Consensus 19 A~~ia~~l~~~g~~v~~~~~------~~~~------~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~~l~~~~~a 86 (147)
T 2hna_A 19 AEHLAEKLEEAGFTTETLHG------PLLE------DLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFG 86 (147)
T ss_dssp HHHHHHHHHHTTCCEEEECC------TTSC------SSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCCTTEEEEE
T ss_pred HHHHHHHHHHCCCceEEecC------CCHH------HcccCCeEEEEECccCCCCCChhHHHHHHHHHhhccccCCCEEE
Confidence 34555666677888765432 1111 246789888887754 56777777654 34566777
Q ss_pred EEccc
Q 022234 132 VVGAG 136 (300)
Q Consensus 132 aVG~~ 136 (300)
+.|-.
T Consensus 87 vfg~G 91 (147)
T 2hna_A 87 AIGIG 91 (147)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 77743
No 317
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=39.99 E-value=46 Score=27.35 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=36.0
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
..+++|+|..-...-.+..+.|++.|+++..+|. + + .+..+|.||++-...
T Consensus 21 ~~~~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~------~--~------~l~~~Dglil~GG~~ 71 (219)
T 1q7r_A 21 QSNMKIGVLGLQGAVREHVRAIEACGAEAVIVKK------S--E------QLEGLDGLVLPGGES 71 (219)
T ss_dssp CCCCEEEEESCGGGCHHHHHHHHHTTCEEEEECS------G--G------GGTTCSEEEECCCCH
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHCCCEEEEECC------H--H------HHhhCCEEEECCCCh
Confidence 4578899996544335567899999998877663 1 1 134799999997643
No 318
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=39.98 E-value=1.6e+02 Score=24.59 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=9.9
Q ss_pred CCCCEEEEEChHHHHH
Q 022234 226 LSIPVVAVASPSAVRS 241 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~ 241 (300)
.++|+|++.+..+.+.
T Consensus 61 ~~vDgII~~~~~~~~~ 76 (295)
T 3lft_A 61 NGNDLVVGIATPAAQG 76 (295)
T ss_dssp SSCSEEEEESHHHHHH
T ss_pred cCCCEEEECCcHHHHH
Confidence 3677777776554443
No 319
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=39.72 E-value=1.7e+02 Score=24.70 Aligned_cols=154 Identities=10% Similarity=0.028 Sum_probs=80.8
Q ss_pred eEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCCCC--hhHHHHHHHhCCCeeEEE
Q 022234 129 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--SNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 129 ~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~--~~~L~~~L~~~G~~v~~~ 206 (300)
+-++.|+..-+.+++.+ ...-+.++++.. +.+..++.+.+. |-..+.+..+.. -....+.+++.|..+--
T Consensus 68 pnit~G~~~v~~lr~~~--p~~~ldvHLmv~--~p~~~i~~~~~a---GAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gv- 139 (246)
T 3inp_A 68 PNLTFGPMVLKALRDYG--ITAGMDVHLMVK--PVDALIESFAKA---GATSIVFHPEASEHIDRSLQLIKSFGIQAGL- 139 (246)
T ss_dssp SCBCCCHHHHHHHHHHT--CCSCEEEEEECS--SCHHHHHHHHHH---TCSEEEECGGGCSCHHHHHHHHHTTTSEEEE-
T ss_pred cchhcCHHHHHHHHHhC--CCCeEEEEEeeC--CHHHHHHHHHHc---CCCEEEEccccchhHHHHHHHHHHcCCeEEE-
Confidence 44677888888888771 001234444433 334455555443 234555544432 22455567777865421
Q ss_pred EeeeeeeCCCCcHHHHHHcCCCCEEEEECh-----------HHHH---HHHHHhcccCCCCceEEE---eCHHHHHHHHH
Q 022234 207 NTYTTEPVHHVDQTVLKQALSIPVVAVASP-----------SAVR---SWVNLISDTEQWSNSVAC---IGETTASAAKR 269 (300)
Q Consensus 207 ~vY~~~~~~~~~~~~~~~l~~~d~IvftS~-----------s~v~---~~~~~~~~~~~~~~~vv~---IG~~Ta~~l~~ 269 (300)
.+ .+....+.+...+..+|.|++.|- .+.+ .+.+..++.+ .+..+.+ |++.|+..+.+
T Consensus 140 al----np~Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~-~~~~I~VDGGI~~~ti~~~~~ 214 (246)
T 3inp_A 140 AL----NPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTD-RDILLEIDGGVNPYNIAEIAV 214 (246)
T ss_dssp EE----CTTCCSGGGTTTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHT-SCCEEEEESSCCTTTHHHHHT
T ss_pred Ee----cCCCCHHHHHHHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcC-CCeeEEEECCcCHHHHHHHHH
Confidence 11 111222221112346777777652 3332 2223332211 2455555 66888999999
Q ss_pred cCCCeEEec----CCCCHHHHHHHHHHHHH
Q 022234 270 LGLKNVYYP----THPGLEGWVDSILEALR 295 (300)
Q Consensus 270 ~G~~~~~v~----~~p~~~~l~~ai~~~~~ 295 (300)
.|...+++- ..++++.-++.+++.+.
T Consensus 215 aGAD~~V~GSaIf~a~dp~~~i~~l~~~i~ 244 (246)
T 3inp_A 215 CGVNAFVAGSAIFNSDSYKQTIDKMRDELN 244 (246)
T ss_dssp TTCCEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEehHHhCCCCHHHHHHHHHHHHh
Confidence 999875432 34577777777777654
No 320
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=39.68 E-value=1e+02 Score=22.16 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=60.5
Q ss_pred CCeEEEeCCCC-chHHHHHHHHh-CCCCEEEeeeeEeeeCCCchhHHHhhhc-CCccEEEEe-----ChHHHHHHHHHHH
Q 022234 50 NPKVVVTRERG-KNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLND-TIFDWIIIT-----SPEAGSVFLEAWK 121 (300)
Q Consensus 50 g~~VlitR~~~-~~~~l~~~L~~-~G~~v~~~P~i~~~~~~~~~~l~~~l~~-~~~d~ivFT-----S~~av~~~~~~l~ 121 (300)
+++||+.-... ....+...|++ .|+++.... +..+..+.+.. ..+|.|+.- ..++.+. .+.++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~--------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~-~~~l~ 74 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVE--------NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEV-LSAIR 74 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEEC--------SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHH-HHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEEC--------CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHH-HHHHH
Confidence 57899887664 34678888888 888665322 22333333445 679988874 2344443 44455
Q ss_pred Hc-CCCCceEEEEc-cchHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 122 EA-GTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 122 ~~-~~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
+. ...+.+++.+. ........+.+.. |.. +++....+.+.|.+.+..
T Consensus 75 ~~~~~~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~~ 123 (140)
T 3lua_A 75 NNSRTANTPVIIATKSDNPGYRHAALKF---KVS-DYILKPYPTKRLENSVRS 123 (140)
T ss_dssp HSGGGTTCCEEEEESCCCHHHHHHHHHS---CCS-EEEESSCCTTHHHHHHHH
T ss_pred hCcccCCCCEEEEeCCCCHHHHHHHHHc---CCC-EEEECCCCHHHHHHHHHH
Confidence 51 22355665554 4333433333222 543 344555666777776654
No 321
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=39.56 E-value=42 Score=28.28 Aligned_cols=49 Identities=6% Similarity=-0.050 Sum_probs=41.7
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccC---CCCceEEEeCHHHHHHHHHcCCCe
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKN 274 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~---~~~~~vv~IG~~Ta~~l~~~G~~~ 274 (300)
.+.+.|.+-|++++..+.+.+.+.. ..++.+++-|..++..+++.|++.
T Consensus 19 ~~g~~IglgsGST~~~~~~~L~~~~~~~~l~itvVtnS~~~a~~l~~~gi~v 70 (226)
T 2pjm_A 19 KDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQYEIPL 70 (226)
T ss_dssp CTTCEEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESSHHHHHHHHHTTCCB
T ss_pred CCCCEEEECCCHHHHHHHHHHHhhhhccCCcEEEEeCcHHHHHHHHhcCCeE
Confidence 5678999999999999999887531 137889999999999999999875
No 322
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=39.37 E-value=36 Score=27.04 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=37.1
Q ss_pred HHHHHHHhCC--CeeEEEEeeeeeeCCCC---------------c---------HHHHHHcCCCCEEEEECh-------H
Q 022234 191 EIEEGLSNRG--FEVVRLNTYTTEPVHHV---------------D---------QTVLKQALSIPVVAVASP-------S 237 (300)
Q Consensus 191 ~L~~~L~~~G--~~v~~~~vY~~~~~~~~---------------~---------~~~~~~l~~~d~IvftS~-------s 237 (300)
.+.+.|++.| .+|+.+.+|+...+... . ....+.+...|.|||.|| .
T Consensus 24 ~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~P~y~~~~p~ 103 (201)
T 1t5b_A 24 YFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPT 103 (201)
T ss_dssp HHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEECCCBTTBCCH
T ss_pred HHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEeCcccCcCCH
Confidence 4555677665 78888888775322111 0 112334567899999995 6
Q ss_pred HHHHHHHHhc
Q 022234 238 AVRSWVNLIS 247 (300)
Q Consensus 238 ~v~~~~~~~~ 247 (300)
.++.|++.+.
T Consensus 104 ~lK~~iD~~~ 113 (201)
T 1t5b_A 104 QLKNYFDLIA 113 (201)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhe
Confidence 8899999876
No 323
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=39.27 E-value=1e+02 Score=21.99 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=63.0
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhh-cCCccEEEEe----ChHHHHHHHHHHHH
Q 022234 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN-DTIFDWIIIT----SPEAGSVFLEAWKE 122 (300)
Q Consensus 49 ~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~-~~~~d~ivFT----S~~av~~~~~~l~~ 122 (300)
.+++||+.-... ....+...|++.|+++.... +..+....+. ...+|.|++- ..++.+. .+.+++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~--------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~-~~~l~~ 76 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGAD--------GAEEARLYLHYQKRIGLMITDLRMQPESGLDL-IRTIRA 76 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEES--------SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHH-HHHHHT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeC--------CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHH-HHHHHh
Confidence 357899887764 45678888999998765421 2222222332 3348887764 2344444 445555
Q ss_pred cCCCCceEEEEcc-chHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 123 AGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 123 ~~~~~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
....+.+++++.. ...+...+.+.. |.. ++.+...+.+.|.+.+.+.
T Consensus 77 ~~~~~~~ii~~s~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~~~ 124 (136)
T 3hdv_A 77 SERAALSIIVVSGDTDVEEAVDVMHL---GVV-DFLLKPVDLGKLLELVNKE 124 (136)
T ss_dssp STTTTCEEEEEESSCCHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHHH
T ss_pred cCCCCCCEEEEeCCCChHHHHHHHhC---Ccc-eEEeCCCCHHHHHHHHHHH
Confidence 4334667766554 333333332211 543 3555667888888877654
No 324
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=39.08 E-value=31 Score=25.33 Aligned_cols=107 Identities=13% Similarity=0.083 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc---CCCCEEEEEC-----hHHHHHHHHHhc
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVAS-----PSAVRSWVNLIS 247 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l---~~~d~IvftS-----~s~v~~~~~~~~ 247 (300)
+.+||++-.+.. +..|.+.|+..|+.|.. +. ...+.++.+ ..+|+|++-- ..+.+ ++..+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~-~~~~l~ 74 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEI---AL------TGEAAVEKVSGGWYPDLILMDIELGEGMDGVQ-TALAIQ 74 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHTTCCCSEEEEESSCSSSCCHHH-HHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEE---ec------ChHHHHHHHhcCCCCCEEEEeccCCCCCCHHH-HHHHHH
Confidence 468999987764 77788899998866532 11 122233322 3678887742 23333 444444
Q ss_pred ccCCCCceEEEeCHHH----HHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 248 DTEQWSNSVACIGETT----ASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 248 ~~~~~~~~vv~IG~~T----a~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
.. .+.+++.++... ...+.+.|.. .++....+.+.|.+.|...++.
T Consensus 75 ~~--~~~~ii~ls~~~~~~~~~~~~~~g~~-~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 75 QI--SELPVVFLTAHTEPAVVEKIRSVTAY-GYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp HH--CCCCEEEEESSSSCCCCGGGGGSCEE-EEEETTCCHHHHHHHHHHHHHH
T ss_pred hC--CCCCEEEEECCCCHHHHHHHHhCCCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 33 356666654332 2345556765 3667767999999988877653
No 325
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=39.04 E-value=25 Score=29.72 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=42.1
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccC---CCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~---~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
.+-+.|-+-|++++..|.+.+.+.. ..++.+++-|..|++.++++|++..
T Consensus 17 ~dg~vIgLGsGST~~~~i~~L~~~~~~~~~~i~~VttS~~t~~~l~~~Gi~l~ 69 (225)
T 3l7o_A 17 EDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQALGIPLK 69 (225)
T ss_dssp CTTCEEEECCSTTHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHHTCCBC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhhhhcCCCEEEEcCCHHHHHHHhccCceEE
Confidence 5678999999999999999887531 1378899999999999999999753
No 326
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=38.92 E-value=21 Score=29.88 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHHHh
Q 022234 191 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLI 246 (300)
Q Consensus 191 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~-------s~v~~~~~~~ 246 (300)
.+.+.|++.|.+|..+.+++ ..+..+..+.+...|.|||.+| ..++.|++.+
T Consensus 51 ~~~~~l~~~g~ev~~~dL~~----~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v 109 (218)
T 3rpe_A 51 VAADFLRESGHQVKITTVDQ----GYDIESEIENYLWADTIIYQMPAWWMGEPWILKKYIDEV 109 (218)
T ss_dssp HHHHHHHHTTCCEEEEEGGG----CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHHHHhhCCCEEEEEECCC----ccCHHHHHHHHHhCCEEEEECChHhccCCHHHHHHHHHH
Confidence 45566777899998888875 2233344555668899999876 6788888764
No 327
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=38.82 E-value=98 Score=25.39 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=26.7
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 47 ~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
.+.||+||||..... ...+++.|.++|++|+.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 36 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIAT 36 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 467999999988653 468999999999987654
No 328
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=38.63 E-value=1.4e+02 Score=26.43 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=50.9
Q ss_pred CCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC--hHHHHHHHHHhc
Q 022234 177 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS--PSAVRSWVNLIS 247 (300)
Q Consensus 177 ~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS--~s~v~~~~~~~~ 247 (300)
.+++.++..+.. .+.+.+.+++.|++|.....|.... .+....+..+ .+.|+|++.+ +..+..|++.+.
T Consensus 164 ~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~ 241 (419)
T 3h5l_A 164 NNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPV--SDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFM 241 (419)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSC--SCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHT
T ss_pred CCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCC--ccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHH
Confidence 478888876543 4567788889999887666665422 2222334433 4889998863 566778888887
Q ss_pred ccCCCCceEEE
Q 022234 248 DTEQWSNSVAC 258 (300)
Q Consensus 248 ~~~~~~~~vv~ 258 (300)
+.+. +..++.
T Consensus 242 ~~g~-~~~~~~ 251 (419)
T 3h5l_A 242 TDPT-NSLVYL 251 (419)
T ss_dssp TSCC-SCEEEE
T ss_pred HcCC-CceEEe
Confidence 6553 445544
No 329
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=38.60 E-value=15 Score=29.92 Aligned_cols=49 Identities=8% Similarity=0.100 Sum_probs=33.5
Q ss_pred hCCCeeEEEEeeeeeeCC----------------CCcHHHHHHcCCCCEEEEECh-------HHHHHHHHHh
Q 022234 198 NRGFEVVRLNTYTTEPVH----------------HVDQTVLKQALSIPVVAVASP-------SAVRSWVNLI 246 (300)
Q Consensus 198 ~~G~~v~~~~vY~~~~~~----------------~~~~~~~~~l~~~d~IvftS~-------s~v~~~~~~~ 246 (300)
+.|.+|+.+.+|+....+ ....+..+.+...|.|||.+| ..++.|++.+
T Consensus 28 ~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v 99 (196)
T 3lcm_A 28 SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPIWWSGMPAILKGFIDRV 99 (196)
T ss_dssp CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECchhhccccHHHHHHHHHH
Confidence 467888888888764211 112334445567899999875 7899999987
No 330
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=38.58 E-value=44 Score=29.98 Aligned_cols=124 Identities=11% Similarity=0.020 Sum_probs=0.0
Q ss_pred cccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEee-----------eeeeCCCCcHHHHHHcCCCCEEEEEChHH
Q 022234 170 LPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY-----------TTEPVHHVDQTVLKQALSIPVVAVASPSA 238 (300)
Q Consensus 170 L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY-----------~~~~~~~~~~~~~~~l~~~d~IvftS~s~ 238 (300)
+.....++++|+++.+......+...+++.|++|..+..+ .....-.+.+.+.+.+...|+|.+.....
T Consensus 7 m~~~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~~ 86 (389)
T 3q2o_A 7 MTRIILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFENI 86 (389)
T ss_dssp CCCCCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCCC
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeeccccc
Q ss_pred HHHHHHHhcccC----CCCceEEEeCHHHHH-HHHHcCCCeEEecCCCCHHHHHHHHHHH
Q 022234 239 VRSWVNLISDTE----QWSNSVACIGETTAS-AAKRLGLKNVYYPTHPGLEGWVDSILEA 293 (300)
Q Consensus 239 v~~~~~~~~~~~----~~~~~vv~IG~~Ta~-~l~~~G~~~~~v~~~p~~~~l~~ai~~~ 293 (300)
...+++.+.+.. .....-.+..+...+ .++++|+.+.-...-.+.+++.+.+.+.
T Consensus 87 ~~~~~~~l~~~g~~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~ 146 (389)
T 3q2o_A 87 DYRCLQWLEKHAYLPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLTEAIAEL 146 (389)
T ss_dssp CHHHHHHHHHHSCCTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH
T ss_pred cHHHHHHHHhhCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhc
No 331
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=38.57 E-value=40 Score=33.29 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=55.4
Q ss_pred CCCCCCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hcCCccEEEEeChHH-----
Q 022234 46 ASNSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NDTIFDWIIITSPEA----- 112 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~~~~d~ivFTS~~a----- 112 (300)
..+.|++|+|.-..+ ......+.|++.|+.|..+-.-.-. . .+..+ ....||+||+.....
T Consensus 533 ~~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~---G---vD~t~~~~~s~~fDAVvlPGG~~~~~~~ 606 (688)
T 3ej6_A 533 PTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLAS---G---VDQTYSAADATAFDAVVVAEGAERVFSG 606 (688)
T ss_dssp SCCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCT---T---CCEETTTCCGGGCSEEEECTTCCTTTST
T ss_pred CCccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCC---C---cccCcccCChhcCcEEEECCCccccccc
Confidence 458899999886654 2245679999999999876331101 0 11122 235799999987632
Q ss_pred ------------HHHHHHHHHHcCCCCceEEEEccchHHHHHHH
Q 022234 113 ------------GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 144 (300)
Q Consensus 113 ------------v~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 144 (300)
+..|....-+ .+.+|++||.+ ...|.+.
T Consensus 607 ~~~~d~Lr~~~~a~~fV~e~~~---hgKpIAAIchg-p~lL~~A 646 (688)
T 3ej6_A 607 KGAMSPLFPAGRPSQILTDGYR---WGKPVAAVGSA-KKALQSI 646 (688)
T ss_dssp TTTCCTTSCTTHHHHHHHHHHH---TTCCEEEEGGG-HHHHHHT
T ss_pred ccchhhhccCHHHHHHHHHHHH---cCCEEEEeCcc-HHHHHHc
Confidence 2223222222 35789999987 4778888
No 332
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=38.48 E-value=2.1e+02 Score=25.37 Aligned_cols=140 Identities=14% Similarity=0.079 Sum_probs=71.1
Q ss_pred CccEE-EEeChHHH-HHHHHHHHHcCCCCceEEEEccc------hHHHHHHHhhccCCCccccccCCCC---cH------
Q 022234 101 IFDWI-IITSPEAG-SVFLEAWKEAGTPNVRIGVVGAG------TASIFEEVIQSSKCSLDVAFSPSKA---TG------ 163 (300)
Q Consensus 101 ~~d~i-vFTS~~av-~~~~~~l~~~~~~~~~i~aVG~~------Ta~~L~~~~~~~~~G~~~~~~p~~~---~~------ 163 (300)
..|.. +|+.+..+ ....+.+.+.+.+.+-+++=|=. -.+.++++ |+.. +.|... +.
T Consensus 79 ~~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~------g~rl-iGPNc~Gii~p~~~~ig 151 (334)
T 3mwd_B 79 EVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQK------GVTI-IGPATVGGIKPGCFKIG 151 (334)
T ss_dssp TCCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHH------TCEE-ECSSCCCEEETTTEECT
T ss_pred CCcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EccCCccccCcchhhcc
Confidence 45654 45676554 67777665443322222222322 22344555 7754 344321 11
Q ss_pred ---HHHHHhcccCCCCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeeeCC-CCcHHHHHHc---CCCCEEEEE-
Q 022234 164 ---KILASELPKNGKKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH-HVDQTVLKQA---LSIPVVAVA- 234 (300)
Q Consensus 164 ---e~L~~~L~~~~~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~-~~~~~~~~~l---~~~d~Ivft- 234 (300)
-.|-..++......++|-++ ++..-...+.+.+..+|+-+..+.-.-..+.. .+..++++.+ .+-++|++.
T Consensus 152 ~~~~~~~a~~~~~~~~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~g 231 (334)
T 3mwd_B 152 NTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLG 231 (334)
T ss_dssp TTTCSHHHHHHTTTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEE
T ss_pred cccccccccccccCCCCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 11222333322223455555 44444566777888888777776666655323 2334455544 245677777
Q ss_pred ---ChHHHHHHHHHhcc
Q 022234 235 ---SPSAVRSWVNLISD 248 (300)
Q Consensus 235 ---S~s~v~~~~~~~~~ 248 (300)
+... +.|++.+++
T Consensus 232 Ei~g~~e-~~~~~~~r~ 247 (334)
T 3mwd_B 232 EIGGTEE-YKICRGIKE 247 (334)
T ss_dssp ESSSSHH-HHHHHHHHT
T ss_pred ecCChHH-HHHHHHHHh
Confidence 3333 677777765
No 333
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=38.47 E-value=1.3e+02 Score=26.70 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=24.0
Q ss_pred CceEEEeCHH-HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 253 SNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 253 ~~~vv~IG~~-Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
++++++.... ..+.+ +.|-.-.+ .+..+.+++.++|.+.+..+
T Consensus 349 G~PvI~~~~~~~~e~i-~~~~~g~~-~~~~d~~~la~~i~~l~~~~ 392 (438)
T 3c48_A 349 GTPVIAARVGGLPIAV-AEGETGLL-VDGHSPHAWADALATLLDDD 392 (438)
T ss_dssp TCCEEEESCTTHHHHS-CBTTTEEE-ESSCCHHHHHHHHHHHHHCH
T ss_pred CCCEEecCCCChhHHh-hCCCcEEE-CCCCCHHHHHHHHHHHHcCH
Confidence 5666665322 22223 22333223 34458999999998877643
No 334
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=38.46 E-value=53 Score=29.84 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=43.8
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeeee------------EeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHH
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFL 117 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i------------~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~ 117 (300)
.++|||.........++..++++|++++.+-.. ...+..|.+.+.+......+|.|+..+-.....+.
T Consensus 19 ~~~ili~g~g~~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~~~~~~ 98 (433)
T 2dwc_A 19 AQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAINLDAL 98 (433)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccCCHHHH
Confidence 468999976544678899999999998765321 11122233344443333578888876654323334
Q ss_pred HHHHHc
Q 022234 118 EAWKEA 123 (300)
Q Consensus 118 ~~l~~~ 123 (300)
..+.+.
T Consensus 99 ~~l~~~ 104 (433)
T 2dwc_A 99 FEFEKD 104 (433)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 444443
No 335
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=38.33 E-value=94 Score=27.10 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=27.9
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHh--CCCCEEEee
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAK--HRIDCLELP 80 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~--~G~~v~~~P 80 (300)
..+.||+||||...+. ...+++.|.+ .|++|+.+-
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~ 43 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLD 43 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEE
Confidence 3577999999987653 4688888988 899998763
No 336
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=38.21 E-value=76 Score=24.87 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=57.2
Q ss_pred CCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh---hc-CCccEEEEeC---------hHHHHHHHHHHHHc
Q 022234 57 RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---ND-TIFDWIIITS---------PEAGSVFLEAWKEA 123 (300)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l---~~-~~~d~ivFTS---------~~av~~~~~~l~~~ 123 (300)
++.++..++.+.|+++|+.+..+.-- +......+...+ .+ ..+|.++... +-.-..|...+.+.
T Consensus 34 ~~~~g~~~~L~~L~~~g~~~~i~Tn~---~~~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~ 110 (189)
T 3ib6_A 34 VLRKNAKETLEKVKQLGFKQAILSNT---ATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNAL 110 (189)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEECC---SSCCHHHHHHHHHHTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHHHHH
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEECC---CccchHHHHHHHHhcCchhheEEEEEccccccccCCCCcCHHHHHHHHHHc
Confidence 34566788999999999766543321 110112233333 22 3466665443 33556777777777
Q ss_pred CCCCceEEEEccc-h--HHHHHHHhhccCCCccccccCC
Q 022234 124 GTPNVRIGVVGAG-T--ASIFEEVIQSSKCSLDVAFSPS 159 (300)
Q Consensus 124 ~~~~~~i~aVG~~-T--a~~L~~~~~~~~~G~~~~~~p~ 159 (300)
+.+.-.++.||.. . ..+.++. |+.+..+..
T Consensus 111 ~~~~~~~l~VGD~~~~Di~~A~~a------G~~~i~v~~ 143 (189)
T 3ib6_A 111 QIDKTEAVMVGNTFESDIIGANRA------GIHAIWLQN 143 (189)
T ss_dssp TCCGGGEEEEESBTTTTHHHHHHT------TCEEEEECC
T ss_pred CCCcccEEEECCCcHHHHHHHHHC------CCeEEEECC
Confidence 7777789999987 3 4566777 888877654
No 337
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=38.10 E-value=1.1e+02 Score=21.98 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=59.5
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC------hHHHHHHHHHHHH
Q 022234 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS------PEAGSVFLEAWKE 122 (300)
Q Consensus 50 g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS------~~av~~~~~~l~~ 122 (300)
.++||+.-... ....+...|++.|+++.... +..+....+....+|.|++-- .++.+ +.+.+++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~--------~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~-~~~~l~~ 76 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFA--------SAESFMRQQISDDAIGMIIEAHLEDKKDSGIE-LLETLVK 76 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEES--------SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHH-HHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC--------CHHHHHHHHhccCCCEEEEeCcCCCCCccHHH-HHHHHHh
Confidence 46899887664 34677888888887654322 222222233345688887753 34444 3445555
Q ss_pred cCCCCceEEEE-ccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 123 AGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 123 ~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
.. .+.+++.+ |........+.+.. |.. ++.....+.+.|...+.+
T Consensus 77 ~~-~~~~ii~~s~~~~~~~~~~~~~~---ga~-~~l~KP~~~~~l~~~i~~ 122 (136)
T 3kto_A 77 RG-FHLPTIVMASSSDIPTAVRAMRA---SAA-DFIEKPFIEHVLVHDVQQ 122 (136)
T ss_dssp TT-CCCCEEEEESSCCHHHHHHHHHT---TCS-EEEESSBCHHHHHHHHHH
T ss_pred CC-CCCCEEEEEcCCCHHHHHHHHHc---ChH-HheeCCCCHHHHHHHHHH
Confidence 44 45555554 44443333332211 543 345556778888777653
No 338
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=37.71 E-value=61 Score=31.76 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=63.0
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHH-----HHHHHHhcccCCCCceEEEeCH
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAV-----RSWVNLISDTEQWSNSVACIGE 261 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v-----~~~~~~~~~~~~~~~~vv~IG~ 261 (300)
.+.....|+..|++|.....+.+ ++..+.. .+.|+|++.|..+. ..+++.+++.+. .+++.-|.
T Consensus 527 a~~va~~l~~aGfeVi~~g~~~t-------ee~v~aa~e~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~--~~V~vgG~ 597 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGGTT-------AEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGA--KALYLSGA 597 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECCCH-------HHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTC--SEEEEESC
T ss_pred HHHHHHHHHhCCeeEEeCCCCCC-------HHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHHHhCCC--CeEEEeCC
Confidence 44667789999999987766654 2333332 47899999887763 344555555443 34555553
Q ss_pred -HH----HHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 262 -TT----ASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 262 -~T----a~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
.+ .+.+++ |+.- +.....+...+++.+.+.++
T Consensus 598 P~~d~~~~~~~~~-G~D~-~~~~g~~~~~~l~~l~~~lg 634 (637)
T 1req_B 598 FKEFGDDAAEAEK-LIDG-RLFMGMDVVDTLSSTLDILG 634 (637)
T ss_dssp GGGGGGGHHHHHH-HCCC-EECTTCCHHHHHHHHHHHTT
T ss_pred CCccchhhHHHHh-ccce-EecCCcCHHHHHHHHHHHhC
Confidence 44 367788 9986 45666788888887777654
No 339
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=37.67 E-value=49 Score=27.90 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=42.5
Q ss_pred CCCCEEEEEChH-HH-------HHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 226 LSIPVVAVASPS-AV-------RSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 226 ~~~d~IvftS~s-~v-------~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
.+.|+|++..-+ +. +.+.+.+.+. .+++++.+...+.++++..|.+.+-+-. |....+-+.+.+++..+
T Consensus 65 ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~--~~iPv~~~~~A~~~al~~~g~~rvgllt-py~~~~~~~~~~~l~~~ 141 (240)
T 3ixl_A 65 QGAAVVSLMCTSLSFYRGAAFNAALTVAMREA--TGLPCTTMSTAVLNGLRALGVRRVALAT-AYIDDVNERLAAFLAEE 141 (240)
T ss_dssp TTEEEEEECCHHHHHTTCHHHHHHHHHHHHHH--HSSCEEEHHHHHHHHHHHTTCSEEEEEE-SSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCcHHHHhcccchHHHHHHHHHhc--cCCCEECHHHHHHHHHHHhCCCEEEEEe-CChHHHHHHHHHHHHHC
Confidence 377888875322 22 3455555542 3578888888888888888877553333 23455555666666554
Q ss_pred C
Q 022234 298 G 298 (300)
Q Consensus 298 ~ 298 (300)
+
T Consensus 142 G 142 (240)
T 3ixl_A 142 S 142 (240)
T ss_dssp T
T ss_pred C
Confidence 3
No 340
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=37.63 E-value=51 Score=28.54 Aligned_cols=60 Identities=8% Similarity=-0.011 Sum_probs=32.2
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCH--------HHHHHHHHcCCCeEEecC-CCCHHHHHHHHHH
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE--------TTASAAKRLGLKNVYYPT-HPGLEGWVDSILE 292 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~--------~Ta~~l~~~G~~~~~v~~-~p~~~~l~~ai~~ 292 (300)
...|+++++|. --.+++.+. .++++++..- ..++.+.+.|. -.+++. ..+.++|.++|.+
T Consensus 253 ~~ad~~v~~sg--~~~~~EAma----~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~ 321 (364)
T 1f0k_A 253 AWADVVVCRSG--ALTVSEIAA----AGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAG 321 (364)
T ss_dssp HHCSEEEECCC--HHHHHHHHH----HTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHT
T ss_pred HhCCEEEECCc--hHHHHHHHH----hCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHh
Confidence 35688888875 222333332 1456666421 12456667666 333332 2347888888764
No 341
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=37.63 E-value=1.6e+02 Score=25.70 Aligned_cols=96 Identities=6% Similarity=-0.027 Sum_probs=56.1
Q ss_pred CCCCeEEEeCCCC-----chHHHHHHHHhC--CCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe-ChHHHHHHHHH
Q 022234 48 NSNPKVVVTRERG-----KNGKLIKALAKH--RIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT-SPEAGSVFLEA 119 (300)
Q Consensus 48 l~g~~VlitR~~~-----~~~~l~~~L~~~--G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT-S~~av~~~~~~ 119 (300)
+..++|.+..+.. ....+.+.++++ |+++.....+... ..+.......+.....|.|++. +......|+.+
T Consensus 140 ~g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~-~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~ 218 (387)
T 3i45_A 140 LPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALY-KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVRE 218 (387)
T ss_dssp SSCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTT-CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHH
T ss_pred cCCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCC-CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHH
Confidence 4568888887653 245677788888 7776543332211 1233333233334678888865 66666777778
Q ss_pred HHHcCC-CCceEEEEccchHHHHHHH
Q 022234 120 WKEAGT-PNVRIGVVGAGTASIFEEV 144 (300)
Q Consensus 120 l~~~~~-~~~~i~aVG~~Ta~~L~~~ 144 (300)
+.+.+. ++..++.........++..
T Consensus 219 ~~~~g~~~~~~i~~~~~~~~~~~~~~ 244 (387)
T 3i45_A 219 GRVRGLFAGRQVVSMLTGEPEYLNPL 244 (387)
T ss_dssp HHHHTSSTTCEEEEEEEESHHHHGGG
T ss_pred HHHcCCCCCCeEEeecCCChHHHHHh
Confidence 888775 3566655443334555544
No 342
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=36.91 E-value=49 Score=30.97 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=60.5
Q ss_pred CCEEEEEc-CCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHH-HHHHHhcccCCCCc
Q 022234 177 KCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR-SWVNLISDTEQWSN 254 (300)
Q Consensus 177 ~~~vL~~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~-~~~~~~~~~~~~~~ 254 (300)
+-++++++ ....++.|.+..++.|.....+...-.. ..+++...+...|+++++|..+.- ..++.+. .++
T Consensus 406 ~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~----~~~~~~~~~~~adv~v~ps~~~~g~~~lEAma----~G~ 477 (568)
T 2vsy_A 406 DSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKL----PHPQYLARYRHADLFLDTHPYNAHTTASDALW----TGC 477 (568)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCC----CHHHHHHHGGGCSEEECCSSSCCSHHHHHHHH----TTC
T ss_pred CcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCC----CHHHHHHHHhcCCEEeeCCCCCCcHHHHHHHh----CCC
Confidence 34666666 3334667777777777542222222111 112344445678889888843100 1122221 256
Q ss_pred eEEE------eCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 255 SVAC------IGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 255 ~vv~------IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
++++ .+...+..+...|+.-. +.+ +.++++++|.+.+..+
T Consensus 478 Pvv~~~g~~~~s~~~~~~l~~~g~~e~-v~~--~~~~la~~i~~l~~~~ 523 (568)
T 2vsy_A 478 PVLTTPGETFAARVAGSLNHHLGLDEM-NVA--DDAAFVAKAVALASDP 523 (568)
T ss_dssp CEEBCCCSSGGGSHHHHHHHHHTCGGG-BCS--SHHHHHHHHHHHHHCH
T ss_pred CEEeccCCCchHHHHHHHHHHCCChhh-hcC--CHHHHHHHHHHHhcCH
Confidence 7766 13445666777788643 333 8899999988877543
No 343
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=36.47 E-value=1.3e+02 Score=24.78 Aligned_cols=92 Identities=12% Similarity=0.159 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEE--EChHH-----HHH
Q 022234 176 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV--ASPSA-----VRS 241 (300)
Q Consensus 176 ~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivf--tS~s~-----v~~ 241 (300)
..+++++.+-.. +...+...|+.+|++|..+-. ..+.+++.+.. .++|+|.+ ++..+ ++.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~------~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV------DVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS------SCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC------CCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHH
Confidence 346777775443 356777889999988744322 22233343433 47888887 55333 444
Q ss_pred HHHHhcccCC-CCceEEEeCH-HHHHHHHHcCCC
Q 022234 242 WVNLISDTEQ-WSNSVACIGE-TTASAAKRLGLK 273 (300)
Q Consensus 242 ~~~~~~~~~~-~~~~vv~IG~-~Ta~~l~~~G~~ 273 (300)
+.+.+++.+. .++++++-|. .+.+.+++.|..
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG~~~~~~~a~~iGad 198 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGGAPVSDKWIEEIGAD 198 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEESSSCCHHHHHHHTCC
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCHHHHHHhCCe
Confidence 5555555443 2678888776 444555666753
No 344
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=36.37 E-value=1.2e+02 Score=25.33 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=27.4
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
..+.||++|||..... ...+++.|.+.|++|+.+
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~ 40 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLIN 40 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3577999999987653 468999999999988754
No 345
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=36.19 E-value=47 Score=27.90 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=14.5
Q ss_pred HHHHHhcccCCCCCCEEEEE-cCCCChhHHHHHHHhC
Q 022234 164 KILASELPKNGKKKCTVLYP-ASAKASNEIEEGLSNR 199 (300)
Q Consensus 164 e~L~~~L~~~~~~~~~vL~~-rg~~~~~~L~~~L~~~ 199 (300)
.++++.|.+. |-+|++. |.+...+.+.+.+++.
T Consensus 22 ~aiA~~la~~---Ga~Vvi~~r~~~~~~~~~~~~~~~ 55 (256)
T 4fs3_A 22 FGVAKVLDQL---GAKLVFTYRKERSRKELEKLLEQL 55 (256)
T ss_dssp HHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHGGG
T ss_pred HHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhc
Confidence 4444444442 3444333 3333444555555543
No 346
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=35.95 E-value=44 Score=28.78 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=30.2
Q ss_pred hhHHHHHHHhCCCee---EEEEeeeeeeCCCCcH---HHHHHc--CCCCEEEEEChHHHHHHHHHh
Q 022234 189 SNEIEEGLSNRGFEV---VRLNTYTTEPVHHVDQ---TVLKQA--LSIPVVAVASPSAVRSWVNLI 246 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v---~~~~vY~~~~~~~~~~---~~~~~l--~~~d~IvftS~s~v~~~~~~~ 246 (300)
++-+.++|++.|+.- .++. |+. ..-+.. .+.+.+ .++|.|+-.+..++.......
T Consensus 26 ~~G~~~~L~~~G~~~g~nv~~~-~~~--a~gd~~~~~~~~~~l~~~~~DlIiai~t~aa~a~~~~~ 88 (302)
T 3lkv_A 26 RQGLLDGLKAKGYEEGKNLEFD-YKT--AQGNPAIAVQIARQFVGENPDVLVGIATPTAQALVSAT 88 (302)
T ss_dssp HHHHHHHHHHTTCCBTTTEEEE-EEE--CTTCHHHHHHHHHHHHTTCCSEEEEESHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCcccCCcEEEE-EEe--CCCCHHHHHHHHHHHHhcCCcEEEEcCCHHHHHHHhhc
Confidence 456788888887531 1222 222 222222 223333 578988877777777666543
No 347
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=35.92 E-value=53 Score=28.01 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=43.2
Q ss_pred HcCCCCEEEEEChHHHHHHHHHhccc----CCCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 224 QALSIPVVAVASPSAVRSWVNLISDT----EQWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 224 ~l~~~d~IvftS~s~v~~~~~~~~~~----~~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
.+.+-+.|.+-|++++..|.+.+.+. .+.++.+++-+..++..+.+.|+++.
T Consensus 24 ~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~ 79 (244)
T 2f8m_A 24 YVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLT 79 (244)
T ss_dssp HCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHHTCCBC
T ss_pred hCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHCCCeEE
Confidence 34677899999999999999998643 12368999999999999999998764
No 348
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=35.82 E-value=2.2e+02 Score=24.70 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=43.7
Q ss_pred cCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCH------HHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHcc
Q 022234 225 ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE------TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 297 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~------~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~ 297 (300)
+...|+++..|... .+.+.+. .+++++++-- ..++.+.+.|.-..+..+..+.+.|.+++.+.+..+
T Consensus 295 l~~ad~~v~~~G~~--t~~Ea~~----~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~ 367 (402)
T 3ia7_A 295 LAHARACLTHGTTG--AVLEAFA----AGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADS 367 (402)
T ss_dssp HTTEEEEEECCCHH--HHHHHHH----TTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCH
T ss_pred HhhCCEEEECCCHH--HHHHHHH----hCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCH
Confidence 45677777777632 2233332 2567777644 578888888876544344568999999998877543
No 349
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=35.77 E-value=1.2e+02 Score=21.69 Aligned_cols=107 Identities=7% Similarity=-0.010 Sum_probs=63.0
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCC-CeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh----HHHHHHHHHhccc
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSWVNLISDT 249 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G-~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~----s~v~~~~~~~~~~ 249 (300)
.+||++..+.. +..+.+.|+..| +.|. ++... .+.++.+ ..+|.|++-.. ++.+ ++..+...
T Consensus 15 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~---~~~~~------~~a~~~l~~~~~dlvi~D~~l~~~~g~~-~~~~l~~~ 84 (135)
T 3snk_A 15 KQVALFSSDPNFKRDVATRLDALAIYDVR---VSETD------DFLKGPPADTRPGIVILDLGGGDLLGKP-GIVEARAL 84 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTSSEEEE---EECGG------GGGGCCCTTCCCSEEEEEEETTGGGGST-THHHHHGG
T ss_pred cEEEEEcCCHHHHHHHHHHHhhcCCeEEE---EeccH------HHHHHHHhccCCCEEEEeCCCCCchHHH-HHHHHHhh
Confidence 58999877764 677888999888 6553 22211 1111112 36888776421 2222 33333332
Q ss_pred CCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 250 EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 250 ~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
. .+.+++.++ +.....+.+.|..- ++....+.+.|.+.|...++.
T Consensus 85 ~-~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 85 W-ATVPLIAVSDELTSEQTRVLVRMNASD-WLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp G-TTCCEEEEESCCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHTC--
T ss_pred C-CCCcEEEEeCCCCHHHHHHHHHcCcHh-hccCCCCHHHHHHHHHHHhcc
Confidence 2 256666553 44556666789864 667777999999999877654
No 350
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=35.71 E-value=2e+02 Score=26.65 Aligned_cols=128 Identities=11% Similarity=0.114 Sum_probs=69.1
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeee-------------ee-CCCCcHHHHHH--c
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT-------------EP-VHHVDQTVLKQ--A 225 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~-------------~~-~~~~~~~~~~~--l 225 (300)
..+.+.+.+......-+++++++|......|.+.|++. ++|.-++-=+. +. -+-...+++.+ +
T Consensus 220 ~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~-~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i 298 (461)
T 4g65_A 220 HIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQT-YSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENI 298 (461)
T ss_dssp THHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTG
T ss_pred hHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhc-CceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCc
Confidence 34566666655444568999999998888999999754 56544322100 00 01111223333 2
Q ss_pred CCCCEEE-EEChHHHHHHHHHhcccCCCCceEEE--eCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 226 LSIPVVA-VASPSAVRSWVNLISDTEQWSNSVAC--IGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 226 ~~~d~Iv-ftS~s~v~~~~~~~~~~~~~~~~vv~--IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
.+.|+++ .|.-.....+..++.+. ..-.++++ --+.-.+.+++.|+..++-|..- .+..|.+++.
T Consensus 299 ~~~D~~ia~T~~De~Ni~~~llAk~-~gv~kvIa~vn~~~~~~l~~~~gid~visp~~~----~a~~I~~~i~ 366 (461)
T 4g65_A 299 DQVDVFIALTNEDETNIMSAMLAKR-MGAKKVMVLIQRGAYVDLVQGGVIDVAISPQQA----TISALLTHVR 366 (461)
T ss_dssp GGCSEEEECCSCHHHHHHHHHHHHH-TTCSEEEEECSCHHHHHHHCSSSSCEEECHHHH----HHHHHHHHHH
T ss_pred hhhcEEEEcccCcHHHHHHHHHHHH-cCCccccccccccchhhhhhccccceeeCHHHH----HHHHHHHHhh
Confidence 4667644 45555555555554443 22223333 35666666777888875544333 3444444444
No 351
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=35.70 E-value=1.2e+02 Score=21.66 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEE-----ChHHHHHHHHHhcc
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA-----SPSAVRSWVNLISD 248 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivft-----S~s~v~~~~~~~~~ 248 (300)
..+||++..+.. +..|...|+..|+.+.. ++. ...+.++.+ ..+|+|++- ...+.+ ++..+..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~--~~~------~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~-~~~~l~~ 79 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLG--VFD------NGEEAVRCAPDLRPDIALVDIMLCGALDGVE-TAARLAA 79 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEE--EES------SHHHHHHHHHHHCCSEEEEESSCCSSSCHHH-HHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEE--EEC------CHHHHHHHHHhCCCCEEEEecCCCCCCCHHH-HHHHHHh
Confidence 468999877764 66788888888865521 111 112222222 368888874 123333 4444443
Q ss_pred cCCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 249 TEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 249 ~~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
. .+.+++.++ ......+.+.|... ++....+.+.|.+.|...++.
T Consensus 80 ~--~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 80 G--CNLPIIFITSSQDVETFQRAKRVNPFG-YLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp H--SCCCEEEEECCCCHHHHHHHHTTCCSE-EEEESCCHHHHHHHHHHHHHH
T ss_pred C--CCCCEEEEecCCCHHHHHHHHhcCCCE-EEeCCCCHHHHHHHHHHHHhc
Confidence 3 356666553 34445566788874 556666899999988877643
No 352
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=35.56 E-value=76 Score=26.66 Aligned_cols=51 Identities=8% Similarity=-0.033 Sum_probs=42.1
Q ss_pred cCCCCEEEEEChHHHHHHHHHhccc---C-CCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 225 ALSIPVVAVASPSAVRSWVNLISDT---E-QWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~~~~~~~---~-~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
+.+-+.|.+-|++++..|.+.+.+. . +.++.+++-+..++..+.+.|++++
T Consensus 18 I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~vi 72 (229)
T 1lk5_A 18 IEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIA 72 (229)
T ss_dssp CCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBC
T ss_pred CCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhCCCeEE
Confidence 3577899999999999999998643 1 2268899999999999999988753
No 353
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=35.43 E-value=1.2e+02 Score=21.63 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=60.4
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe---------ChHHHHHHHH
Q 022234 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT---------SPEAGSVFLE 118 (300)
Q Consensus 49 ~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT---------S~~av~~~~~ 118 (300)
..++||+.-... ....+...|++.|+++..+ .+..+....+....+|.|++- ..++.+. .+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~-~~ 72 (140)
T 2qr3_A 2 SLGTIIIVDDNKGVLTAVQLLLKNHFSKVITL--------SSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFW-LH 72 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEE--------CCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHH-HH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCcEEEEe--------CCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHH-HH
Confidence 357888887654 3567888888888765422 122333334444578988875 2344443 44
Q ss_pred HHHHcCCCCceEEEEccc-hHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 119 AWKEAGTPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 119 ~l~~~~~~~~~i~aVG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
.+++.. .+.+++++... ......+.+.. |.. +++....+.+.|.+.+...
T Consensus 73 ~l~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~l~~~l~~~ 123 (140)
T 2qr3_A 73 EIKRQY-RDLPVVLFTAYADIDLAVRGIKE---GAS-DFVVKPWDNQKLLETLLNA 123 (140)
T ss_dssp HHHHHC-TTCCEEEEEEGGGHHHHHHHHHT---TCC-EEEEESCCHHHHHHHHHHH
T ss_pred HHHhhC-cCCCEEEEECCCCHHHHHHHHHc---Cch-heeeCCCCHHHHHHHHHHH
Confidence 455443 35666665443 33333332222 443 3444556777787776543
No 354
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=35.32 E-value=53 Score=26.04 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=30.4
Q ss_pred HHHHHHHh-CCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHHHhcc
Q 022234 191 EIEEGLSN-RGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISD 248 (300)
Q Consensus 191 ~L~~~L~~-~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~-------s~v~~~~~~~~~ 248 (300)
.+.+.|.+ .|++|+.+.+.+. .. ..+...|.|+|.|| ..++.|++.+..
T Consensus 24 ~i~~~l~~~~g~~v~~~~l~~~-----~~----~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~ 80 (188)
T 2ark_A 24 LVAEGARSLEGTEVRLKHVDEA-----TK----EDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLG 80 (188)
T ss_dssp HHHHHHHTSTTEEEEEEETTTC-----CH----HHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGG
T ss_pred HHHHHHhhcCCCeEEEEEhhhC-----CH----HHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhh
Confidence 45666776 7766554444321 11 12346799999886 468888888754
No 355
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=35.05 E-value=1.2e+02 Score=21.63 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHh-CCCe-eEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEECh----HHHHHHHHHhc
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSN-RGFE-VVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSWVNLIS 247 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~-~G~~-v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~----s~v~~~~~~~~ 247 (300)
..+||++..+.. +..|.+.|+. .|+. |.. +. ...+.++.+ ..+|+|++--. .+. .++..+.
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~---~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~-~~~~~l~ 77 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKI---AY------NPFDAGDLLHTVKPDVVMLDLMMVGMDGF-SICHRIK 77 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEE---EC------SHHHHHHHHHHTCCSEEEEETTCTTSCHH-HHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEE---EC------CHHHHHHHHHhcCCCEEEEecccCCCcHH-HHHHHHH
Confidence 468999877764 6678888888 8876 322 11 122222222 46888887532 233 3445554
Q ss_pred cc-CCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 248 DT-EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 248 ~~-~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
.. ...+++++.++ ......+.+.|... ++....+.+.|.+.|...+....
T Consensus 78 ~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 78 STPATANIIVIAMTGALTDDNVSRIVALGAET-CFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp TSTTTTTSEEEEEESSCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHHTTC
T ss_pred hCccccCCcEEEEeCCCCHHHHHHHHhcCCcE-EEeCCCCHHHHHHHHHHHHHhhc
Confidence 42 12466777653 33445666789875 56666799999999998886654
No 356
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=35.02 E-value=31 Score=30.57 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=41.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
.|.+|++..+.-....+...++..|+++..+|+-. ....|.+.+.+.+...+...|+++++
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~ 147 (411)
T 3nnk_A 87 PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPW-GEVFTPDQVEDAVKRIRPRLLLTVQG 147 (411)
T ss_dssp TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHhhCCCeEEEEeCC
Confidence 57889999876433447788888999999988721 11225566766663336788888884
No 357
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=34.97 E-value=75 Score=25.53 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=38.4
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
.+|.|++|.+.+.......+.+.+.+.|.++.. ....+..+....+..+..|+++....
T Consensus 144 ~dL~g~~i~~~~g~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~l~~g~vDa~~~~~~ 202 (259)
T 2v25_A 144 ADMKGANIGVAQAATTKKAIGEAAKKIGIDVKF------SEFPDYPSIKAALDAKRVDAFSVDKS 202 (259)
T ss_dssp GGCTTCEEEEETTCSHHHHHHHHHHHTTCCCEE------EEESSHHHHHHHHHTTSSSEEEEEHH
T ss_pred HHhCCCEEEEecCCchHHHHHHHHHhcCCceeE------EEeCCHHHHHHHHHcCCCcEEEecHH
Confidence 568899999987766666677778888885321 22223344444456788998776543
No 358
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=34.83 E-value=1.4e+02 Score=25.78 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=13.9
Q ss_pred CCEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 022234 177 KCTVLYPASAKASNEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 177 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 207 (300)
|.+|+++...-....+...++..|+++..++
T Consensus 95 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 125 (386)
T 2dr1_A 95 GGKVLVTIIGAFGKRYKEVVESNGRKAVVLE 125 (386)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEcCCchhHHHHHHHHHhCCceEEEe
Confidence 4455555443322223444445555554443
No 359
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=34.75 E-value=85 Score=26.29 Aligned_cols=50 Identities=22% Similarity=0.098 Sum_probs=41.2
Q ss_pred CCCCEEEEEChHHHHHHHHHhccc---CCCC-ceEEEeCHHHHHHHHHcCCCeE
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDT---EQWS-NSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~---~~~~-~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
.+-+.|.+-|++++..+.+.+.+. ...+ +.+++-+..++..+.+.|++++
T Consensus 21 ~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~ 74 (227)
T 1uj6_A 21 QDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLV 74 (227)
T ss_dssp CTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBC
T ss_pred CCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhCCCeEE
Confidence 567899999999999999988643 1114 8899999999999999898764
No 360
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=34.57 E-value=2.2e+02 Score=24.49 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=89.3
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCCEEEeeee------EeeeCCCchhHHHhhhcCCccEE-EEeChHHHHHHHHHHHH
Q 022234 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLI------QHAQGPDTDRLSSVLNDTIFDWI-IITSPEAGSVFLEAWKE 122 (300)
Q Consensus 51 ~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i------~~~~~~~~~~l~~~l~~~~~d~i-vFTS~~av~~~~~~l~~ 122 (300)
.+|+|....+ ......+.+.+.|++ ...|+- ++...+-+..+.+.......|.+ +||.+..+......+.+
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~~v~ea~~ 92 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAID 92 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHHHHHHHHHHHHH
Confidence 3467755533 245677888888988 333321 11101111223333221156665 57888888777777777
Q ss_pred cCCCCceEEEEcc---------chHHHHHHHhhccCCCccccccCCCC---cH-HHHHHhcccCCCCCCEEEEE-cCCCC
Q 022234 123 AGTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYP-ASAKA 188 (300)
Q Consensus 123 ~~~~~~~i~aVG~---------~Ta~~L~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~L~~~~~~~~~vL~~-rg~~~ 188 (300)
.+ ++.++++. .-.+.+++. |+.. +.|... +. ..+...++......++|-++ ++..-
T Consensus 93 ~G---i~~vVi~t~G~~~~~~~~l~~~A~~~------gi~v-iGPNc~Gii~~~~~~~~~~~~~~~~~G~va~vSqSG~l 162 (294)
T 2yv1_A 93 AG---IELIVVITEHIPVHDTMEFVNYAEDV------GVKI-IGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTL 162 (294)
T ss_dssp TT---CSEEEECCSCCCHHHHHHHHHHHHHH------TCEE-ECSSCCEEEETTTEEEECCCGGGCCEEEEEEEESCSHH
T ss_pred CC---CCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EcCCCceeeccCcceeeecccCCCCCCCEEEEECCHHH
Confidence 54 45333332 233455556 7753 233311 01 11111122221223456555 44444
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeC-CCCcHHHHHHc---CCCCEEEEECh
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASP 236 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~l---~~~d~IvftS~ 236 (300)
...+.+.+..+|+-+..+.-.-.... ..+..++++.+ .+-++|+++.-
T Consensus 163 ~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E 214 (294)
T 2yv1_A 163 TYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGE 214 (294)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 55677888899988877777666553 23334555544 24556766653
No 361
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=34.52 E-value=1.5e+02 Score=29.34 Aligned_cols=114 Identities=19% Similarity=0.275 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCCC-Ch----hHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH----------
Q 022234 175 KKKCTVLYPASAK-AS----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS---------- 237 (300)
Q Consensus 175 ~~~~~vL~~rg~~-~~----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s---------- 237 (300)
..+++|+++-++. .. ..+.+.|++.|+.|..+-.-.- .. .+..+... ..+|+|++..+.
T Consensus 535 l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g--~G--vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~ 610 (688)
T 3ej6_A 535 IATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA--SG--VDQTYSAADATAFDAVVVAEGAERVFSGKGAM 610 (688)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC--TT--CCEETTTCCGGGCSEEEECTTCCTTTSTTTTC
T ss_pred ccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC--CC--cccCcccCChhcCcEEEECCCcccccccccch
Confidence 3678999998876 32 3567899999999877755321 00 11111111 368999997663
Q ss_pred -------HHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCe----EEecCCCCHHHHHHHHHHHHHccCC
Q 022234 238 -------AVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN----VYYPTHPGLEGWVDSILEALREHGH 299 (300)
Q Consensus 238 -------~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~----~~v~~~p~~~~l~~ai~~~~~~~~~ 299 (300)
.+..|+..+-+ ...+|.+|+.. ...|.+.|+.. +++ .+...+++.+.+.+..||.
T Consensus 611 d~Lr~~~~a~~fV~e~~~---hgKpIAAIchg-p~lL~~AGI~~~~~g~~~---~~~~~~~~~~~~~~~~~r~ 676 (688)
T 3ej6_A 611 SPLFPAGRPSQILTDGYR---WGKPVAAVGSA-KKALQSIGVEEKEAGVYA---GAQDEVIKGVEEGLKVFKF 676 (688)
T ss_dssp CTTSCTTHHHHHHHHHHH---TTCCEEEEGGG-HHHHHHTTCCSSSTTEEE---ECHHHHHHHHHHHHHHCCC
T ss_pred hhhccCHHHHHHHHHHHH---cCCEEEEeCcc-HHHHHHcCCCCCCCeEEe---cCcHHHHHHHHHHHHhcCC
Confidence 12333333322 24556566532 25666777742 222 2356677777777777764
No 362
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=34.47 E-value=40 Score=29.41 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=46.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH---H----HHHHHHHHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE---A----GSVFLEAWK 121 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~---a----v~~~~~~l~ 121 (300)
.|.+|+++.+......+...++..|+++..+|+.......|.+.+.+.+...+...|++++++ + ++.+.+.++
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~ 164 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIK 164 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHH
Confidence 477898886543333334677888999988886211111255666666633356788888765 2 455666565
Q ss_pred Hc
Q 022234 122 EA 123 (300)
Q Consensus 122 ~~ 123 (300)
+.
T Consensus 165 ~~ 166 (385)
T 2bkw_A 165 QT 166 (385)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 363
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=34.42 E-value=49 Score=28.15 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=36.7
Q ss_pred CCEEEEEcCC--CChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEECh
Q 022234 177 KCTVLYPASA--KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 236 (300)
Q Consensus 177 ~~~vL~~rg~--~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~ 236 (300)
.++|+++... .....+.+.|++.|+++..+.+|.....+.. +.++|.||++-+
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~-------~~~~d~lIl~GG 57 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAE-------IRDCSGLAMMGG 57 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSC-------GGGSSEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCc-------cccCCEEEECCC
Confidence 3678888543 4577888999999999888777765433221 346788877643
No 364
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=34.41 E-value=67 Score=27.58 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=41.6
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHH
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSV 115 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~ 115 (300)
.+|.|++|.+++.......+...|++.|+....+ ++.+. ...+....+..+..|+++...+.....
T Consensus 127 ~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v---~~v~~-~~~~~~~al~~G~vDa~~~~~p~~~~~ 192 (324)
T 3ksx_A 127 ADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDI---TPLYL-SPANARAAFAAGQVDAWAIWDPWYSAL 192 (324)
T ss_dssp GGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGS---EEEEC-CHHHHHHHHHTTCCSEEEEETTHHHHH
T ss_pred HHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHe---EEEeC-CHHHHHHHHHcCCCCEEEEccHHHHHH
Confidence 5689999999854444445777889999865322 22222 223344455567889887776655443
No 365
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=34.35 E-value=24 Score=29.54 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=21.3
Q ss_pred CCeEEEe----CCCCch----HHHHHHHHhCCCCEEEeeeeEe
Q 022234 50 NPKVVVT----RERGKN----GKLIKALAKHRIDCLELPLIQH 84 (300)
Q Consensus 50 g~~Vlit----R~~~~~----~~l~~~L~~~G~~v~~~P~i~~ 84 (300)
||+||+. |+...+ +.+.+.+++.|.++..+-+...
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhc
Confidence 4677655 222222 3456666777999888777653
No 366
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=34.26 E-value=81 Score=26.24 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCch----hHHHhhh-cCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEc
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLN-DTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 134 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~----~l~~~l~-~~~~d~ivFTS~~av~~~~~~l~~~~~---~~~~i~aVG 134 (300)
.-+.+.++++|..+....++... .+.+ .+.+.+. ...+|+|+.++-..+..+.+.+.+.+. +++.++..+
T Consensus 147 ~gf~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 147 KGFIETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHHHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 44566777777665432222211 1211 2334443 346888888888777777788888775 467777776
No 367
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=34.10 E-value=1.4e+02 Score=21.95 Aligned_cols=107 Identities=13% Similarity=0.088 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHHhccc
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDT 249 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS----~s~v~~~~~~~~~~ 249 (300)
+.+||++..+.. +..|...|...|+.|. .+. ...+.+..+ ..+|+|++-- ..+.+ ++..+...
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~a~~~l~~~~~dliild~~l~~~~g~~-~~~~l~~~ 72 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVS---SFA------SATEALAGLSADFAGIVISDIRMPGMDGLA-LFRKILAL 72 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEE---EES------CHHHHHHTCCTTCCSEEEEESCCSSSCHHH-HHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEE---EEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-HHHHHHhh
Confidence 358888877764 6678888988886543 111 122334433 3678887642 22332 34444332
Q ss_pred CCCCceEEEeCH----HHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 250 EQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 250 ~~~~~~vv~IG~----~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
. .+++++.++. .....+.+.|..- ++....+.+.|.+.|...+.
T Consensus 73 ~-~~~pii~ls~~~~~~~~~~~~~~g~~~-~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 73 D-PDLPMILVTGHGDIPMAVQAIQDGAYD-FIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp C-TTSCEEEEECGGGHHHHHHHHHTTCCE-EEESSCCHHHHHHHHHHHHH
T ss_pred C-CCCCEEEEECCCChHHHHHHHhcCCCe-EEeCCCCHHHHHHHHHHHHH
Confidence 1 3566666532 3445556678864 56666789999998887664
No 368
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=34.09 E-value=37 Score=28.91 Aligned_cols=63 Identities=13% Similarity=-0.014 Sum_probs=38.9
Q ss_pred CCCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEE--EeChHH
Q 022234 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWII--ITSPEA 112 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~iv--FTS~~a 112 (300)
-.+|.||+|.++........+...|++.|+....+..+. .+ .+ ....+..+..|+++ +.....
T Consensus 101 ~~DL~Gk~i~~~~~~~~~~~~~~~l~~~Gl~~~~v~~~~---~~-~~-~~~al~~G~vDa~~~~~~~~~~ 165 (302)
T 3ix1_A 101 PADLVGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMD---VG-FE-LGASIVSGRADAVVGTYINHEY 165 (302)
T ss_dssp GGGGTTSEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEE---CT-TC-HHHHHHHSSSSEEEEEETTTHH
T ss_pred hHHcCCCEEEeCCCcchHHHHHHHHHHcCCCHHHeEEEe---cC-cc-HHHHHhCCCCCEEEEeeecchH
Confidence 467899999999876555567888899998743222222 21 11 22334457888877 555443
No 369
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=34.09 E-value=35 Score=29.37 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=41.4
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccC--CCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~--~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
.+-++|-+-|++++..|.+.+.+.. ..++.++.-|..|++.++++|++..
T Consensus 40 ~dg~vIgLGsGST~~~~i~~L~~~~~~gl~ItvVttS~~ta~~l~~~GI~l~ 91 (255)
T 3hhe_A 40 EDDMRLGIGSGSTVNEFIPLLGERVANGLRVTCVATSQYSEQLCHKFGVPIS 91 (255)
T ss_dssp CTTEEEEECCSHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHTTCCBC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhhccCCcEEEEcCCHHHHHHHHHcCCcEE
Confidence 4668999999999999999886531 1267888999999999999999754
No 370
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=34.08 E-value=1.4e+02 Score=26.86 Aligned_cols=112 Identities=8% Similarity=-0.058 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee-------------eeeCCCCcHHHHHHcCCCCEEEEEChHHHHHH
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT-------------TEPVHHVDQTVLKQALSIPVVAVASPSAVRSW 242 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~-------------~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~ 242 (300)
++++|+++.|......+...+++.|++|..+. +. ....-.+.+.+.+.....|+|++..-.....+
T Consensus 23 ~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e~~~~~~ 101 (403)
T 3k5i_A 23 NSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIEHVDTYA 101 (403)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSSCSCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCCCCCHHH
Q ss_pred HHHhcccCCCCceEEEeCHHHHH----------HHHHcCCCeEEecCCC--CHHHHHHHHHHH
Q 022234 243 VNLISDTEQWSNSVACIGETTAS----------AAKRLGLKNVYYPTHP--GLEGWVDSILEA 293 (300)
Q Consensus 243 ~~~~~~~~~~~~~vv~IG~~Ta~----------~l~~~G~~~~~v~~~p--~~~~l~~ai~~~ 293 (300)
+..+.+ .++ +.-++.+.+ .++++|+.+.-...-. +.+++.+++.+.
T Consensus 102 l~~l~~----g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~ 159 (403)
T 3k5i_A 102 LEEVAS----EVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQL 159 (403)
T ss_dssp HHHHTT----TSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHc----CCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCCHHHHHHHHHHh
No 371
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=33.99 E-value=1.2e+02 Score=26.50 Aligned_cols=15 Identities=13% Similarity=0.116 Sum_probs=8.0
Q ss_pred eEEEeCHHHHHHHHH
Q 022234 255 SVACIGETTASAAKR 269 (300)
Q Consensus 255 ~vv~IG~~Ta~~l~~ 269 (300)
-+++..+...+.+++
T Consensus 230 G~l~~~~~~~~~~~~ 244 (393)
T 1vjo_A 230 SPFTMSSRAIEKLQR 244 (393)
T ss_dssp EEEEECHHHHHHHHT
T ss_pred EEEEECHHHHHHHhc
Confidence 355555655555543
No 372
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=33.93 E-value=73 Score=26.60 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=41.6
Q ss_pred cCCCCEEEEEChHHHHHHHHHhcccCCCCceE-EEeCHHHHHHHHHcCCCeE
Q 022234 225 ALSIPVVAVASPSAVRSWVNLISDTEQWSNSV-ACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~v-v~IG~~Ta~~l~~~G~~~~ 275 (300)
+.+-+.|.+-|++++..+.+.+.+.. .++.+ ++-+..++..+.+.|+++.
T Consensus 18 I~dg~~I~LdsGST~~~la~~L~~~~-~~itv~VTnS~~~a~~l~~~gi~vi 68 (219)
T 1m0s_A 18 VKADRIVGVGSGSTVNCFIEALGTIK-DKIQGAVAASKESEELLRKQGIEVF 68 (219)
T ss_dssp CCTTSEEEECCSHHHHHHHHHHHTTG-GGSCEEEESSHHHHHHHHHTTCCBC
T ss_pred CCCCCEEEEcChHHHHHHHHHHhccC-CCEEEEECChHHHHHHHHhCCCeEE
Confidence 35778999999999999999996531 15788 9999999999999988753
No 373
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=33.78 E-value=72 Score=28.50 Aligned_cols=117 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEee-----------eeeeCCCCcHHHHHHcCCCCEEEE----EChHHHH
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY-----------TTEPVHHVDQTVLKQALSIPVVAV----ASPSAVR 240 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY-----------~~~~~~~~~~~~~~~l~~~d~Ivf----tS~s~v~ 240 (300)
++++|+++.+..-...+...+++.|++|..+..+ .....-.+.+.+.+.....|+|++ .....+.
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~~~~~~l~ 90 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLK 90 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTTSCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccccCHHHHH
Q ss_pred HHHHHhcccCCCCceEEEeCHHHHH-HHHHcCCCeEEecCCCCHHHHHHHHHH
Q 022234 241 SWVNLISDTEQWSNSVACIGETTAS-AAKRLGLKNVYYPTHPGLEGWVDSILE 292 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~vv~IG~~Ta~-~l~~~G~~~~~v~~~p~~~~l~~ai~~ 292 (300)
.+.+...-.......-.+..+...+ .++++|+.+.-...-.+.+++.+.+.+
T Consensus 91 ~l~~~~~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~ 143 (377)
T 3orq_A 91 LLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIET 143 (377)
T ss_dssp HHHHHSCCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSSTHHHHHHHH
T ss_pred HHhhhcCCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHH
No 374
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=33.65 E-value=1.3e+02 Score=21.35 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc---------CCCCEEEEE----ChHHHHHH
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---------LSIPVVAVA----SPSAVRSW 242 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l---------~~~d~Ivft----S~s~v~~~ 242 (300)
+.+||++..+.. +..|.+.|+..|+... +..+. ...+.++.+ ..+|+|++- ...+.+ +
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~-v~~~~------~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~-~ 73 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHE-VVTVR------DGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGRE-V 73 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCE-EEEEC------SHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHH-H
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEC------CHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHH-H
Confidence 468888877764 6778889998886321 11111 122233322 257877763 223333 4
Q ss_pred HHHhcccC-CCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 243 VNLISDTE-QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 243 ~~~~~~~~-~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
+..+.... ..+.+++.++ +.....+.+.|..- ++....+.+.|.+.|...+..
T Consensus 74 ~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNC-YITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp HHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSE-EEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhh-eecCCCCHHHHHHHHHHHHHH
Confidence 44444322 1345666552 34555666789874 567767999999988877654
No 375
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=33.60 E-value=67 Score=27.35 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=40.4
Q ss_pred CCCCeEEEeCCCCchH-HHHHHHHhCCCCEEEeeeeEeeeCC-CchhHHHhhhcCCccEEEEeChHHHHH
Q 022234 48 NSNPKVVVTRERGKNG-KLIKALAKHRIDCLELPLIQHAQGP-DTDRLSSVLNDTIFDWIIITSPEAGSV 115 (300)
Q Consensus 48 l~g~~VlitR~~~~~~-~l~~~L~~~G~~v~~~P~i~~~~~~-~~~~l~~~l~~~~~d~ivFTS~~av~~ 115 (300)
|.||+|.++.+..-.+ -+...|++.|.+ +++.... ...++...+..+..|+.+..-+.....
T Consensus 94 LkGK~Iav~~~gs~~~~ll~~~L~~~Gld------v~~~~~~~~~~~~~~al~~G~vDa~~~~eP~~~~a 157 (283)
T 3hn0_A 94 LKEPALYVFGNGTTPDILTRYYLGRQRLD------YPLNYAFNTAGEITQGILAGKVNRAVLGEPFLSIA 157 (283)
T ss_dssp CCSCCEECSSTTSHHHHHHHHHHHHHTCC------CCEECSCCSHHHHHHHHHHTSCSEEEECTTHHHHH
T ss_pred CCCCEEEecCCCCcHHHHHHHHHHHcCCc------eEEEEccCCHHHHHHHHHcCCCCEEEecccHHHHH
Confidence 9999999985544333 455668888983 2333332 234455556678899988877766554
No 376
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=33.54 E-value=25 Score=30.28 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCeeEEEEeeeeeeCC---------------------------------CCcHHHHHHcCCCCEEEEECh-
Q 022234 191 EIEEGLSNRGFEVVRLNTYTTEPVH---------------------------------HVDQTVLKQALSIPVVAVASP- 236 (300)
Q Consensus 191 ~L~~~L~~~G~~v~~~~vY~~~~~~---------------------------------~~~~~~~~~l~~~d~IvftS~- 236 (300)
.+.+.|++.|.+|+.+.+|+....+ +......+.+...|.|||.+|
T Consensus 24 ~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~l~~AD~IV~~~P~ 103 (273)
T 1d4a_A 24 AAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPL 103 (273)
T ss_dssp HHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHHHHHHHHHHHhCCEEEEECch
Confidence 4555677889999999998764200 001112223457899999885
Q ss_pred ------HHHHHHHHHhc
Q 022234 237 ------SAVRSWVNLIS 247 (300)
Q Consensus 237 ------s~v~~~~~~~~ 247 (300)
..++.|++.+-
T Consensus 104 y~~s~Pa~LK~~iDrv~ 120 (273)
T 1d4a_A 104 QWFGVPAILKGWFERVF 120 (273)
T ss_dssp BTTBCCHHHHHHHHHHS
T ss_pred hhccCCHHHHHHHHHHH
Confidence 78999999864
No 377
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=33.48 E-value=52 Score=27.46 Aligned_cols=84 Identities=10% Similarity=-0.046 Sum_probs=49.9
Q ss_pred CCCCCeEEEeCCCC---chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhh-cC--CccEEE--EeChHHHHHHHH
Q 022234 47 SNSNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN-DT--IFDWII--ITSPEAGSVFLE 118 (300)
Q Consensus 47 ~l~g~~VlitR~~~---~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~-~~--~~d~iv--FTS~~av~~~~~ 118 (300)
.+.|+++|||.... =...+++.|.++|++|+.+-. .. ...+.+.+... .+ ...++. +++..+++.+++
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r--~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYA--GE--RLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFA 79 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEES--SG--GGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecC--ch--HHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHH
Confidence 57799999998763 357899999999998765421 11 11122222221 11 233332 478899999888
Q ss_pred HHHHc-CCCCceEEEEc
Q 022234 119 AWKEA-GTPNVRIGVVG 134 (300)
Q Consensus 119 ~l~~~-~~~~~~i~aVG 134 (300)
.+.+. +.-+.-+.+.|
T Consensus 80 ~~~~~~g~id~li~~Ag 96 (266)
T 3oig_A 80 SIKEQVGVIHGIAHCIA 96 (266)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHhCCeeEEEEccc
Confidence 77553 32244444444
No 378
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=33.37 E-value=54 Score=31.29 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=80.9
Q ss_pred CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEc-cch
Q 022234 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AGT 137 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~~~i~aVG-~~T 137 (300)
.+..++.+.|++.|+++..+- ......+++ -+.+..+.-+..++.......+.|++. +.+-+.+.-+| ..|
T Consensus 219 gD~~eikrlL~~~Gi~v~~~~----~gg~t~~ei---~~~~~A~~niv~~~~~~~~~A~~Leer~GiP~i~~~piG~~~T 291 (533)
T 1mio_A 219 GDAWEMDRVLEKIGYHVNATL----TGDATYEKV---QNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCNFIGVDGI 291 (533)
T ss_dssp SHHHHHHHHHHHHTCEEEEEE----ETTCCHHHH---HBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHH
T ss_pred hhHHHHHHHHHHCCCeEEEEe----CCCCCHHHH---HhhhcCCEEEEECHHHHHHHHHHHHHHhCCCeEEecCCCHHHH
Confidence 456899999999999988621 111122333 246777888887877777777777553 43322222366 467
Q ss_pred HHHHHHHhhccCCCccc--cccCCCCc--HHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee
Q 022234 138 ASIFEEVIQSSKCSLDV--AFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 210 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~--~~~p~~~~--~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~ 210 (300)
.+.|++.. .+.|... .-++..-. -..+.+.|... ...|+++.+..+....-.+...|.+.|+.|..+-++.
T Consensus 292 ~~~Lr~ia--~~~g~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~GKrv~i~~~~~~~~~l~~~l~ElGm~vv~~~t~~ 368 (533)
T 1mio_A 292 VETLRDMA--KCFDDPELTKRTEEVIAEEIAAIQDDLDYFKEKLQGKTACLYVGGSRSHTYMNMLKSFGVDSLVAGFEF 368 (533)
T ss_dssp HHHHHHHH--HHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEESSSHHHHHHHHHHHHTCEEEEEEESS
T ss_pred HHHHHHHH--HHhCCCcccccchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHCCCEEEEEEecc
Confidence 77777762 1113210 00111000 01122222211 1267899888777767778889999999987765544
No 379
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=33.33 E-value=77 Score=30.13 Aligned_cols=135 Identities=10% Similarity=-0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEeeeeE-------------eeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCce
Q 022234 63 GKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 129 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~-------------~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~ 129 (300)
.++.+.|++.|+++..+|=+. +......+++.. .+..+.-+..++.......+.|++.. +++
T Consensus 238 ~elkrlL~~~Gi~v~~lpd~s~~ld~p~~~~~~~~~ggtt~~ei~~---~~~A~~niv~~~~~~~~~A~~Le~~~--GiP 312 (523)
T 3u7q_B 238 RVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKD---APNALNTVLLQPWHLEKTKKFVEGTW--KHE 312 (523)
T ss_dssp HHHHHHHHHTTCCEEESSCCTTTTSCCCSSCCCSCCCCBCHHHHHH---GGGSSEEEESSGGGCHHHHHHHHHTS--CCC
T ss_pred HHHHHHHHHcCCeEEEecCchhcccccccccccccCCCCCHHHHHH---hhcCcEEEEEccchHHHHHHHHHHHh--CCC
Q ss_pred EEEEcc-----chHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc-----CCCCCCEEEEEcCCCChhHHHHHHHhC
Q 022234 130 IGVVGA-----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK-----NGKKKCTVLYPASAKASNEIEEGLSNR 199 (300)
Q Consensus 130 i~aVG~-----~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~-----~~~~~~~vL~~rg~~~~~~L~~~L~~~ 199 (300)
.+.++. .|.+.|++. +-....-....-.+.-.+.... ....|+++.+..+..-.-.|...|.+.
T Consensus 313 ~i~~~~PiG~~~T~~~l~~l------a~~~g~~~~~~i~~er~r~~~~l~d~~~~l~GKrvaI~gd~~~~~~la~fL~el 386 (523)
T 3u7q_B 313 VPKLNIPMGLDWTDEFLMKV------SEISGQPIPASLTKERGRLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLEL 386 (523)
T ss_dssp CCCCCCSCHHHHHHHHHHHH------HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHHHT
T ss_pred eeecCCcCCHHHHHHHHHHH------HHHHCCChhHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHc
Q ss_pred CCeeEEEEe
Q 022234 200 GFEVVRLNT 208 (300)
Q Consensus 200 G~~v~~~~v 208 (300)
|+.+..+.+
T Consensus 387 Gm~vv~v~~ 395 (523)
T 3u7q_B 387 GCEPVHILC 395 (523)
T ss_dssp TCEEEEEEE
T ss_pred CCEEEEEEe
No 380
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=33.32 E-value=58 Score=28.50 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=33.5
Q ss_pred cCCCCEEEEEChHHHHHHHHH--hcccCCCCceEEE--eCHHHHHHHHHcCCCeEEecC
Q 022234 225 ALSIPVVAVASPSAVRSWVNL--ISDTEQWSNSVAC--IGETTASAAKRLGLKNVYYPT 279 (300)
Q Consensus 225 l~~~d~IvftS~s~v~~~~~~--~~~~~~~~~~vv~--IG~~Ta~~l~~~G~~~~~v~~ 279 (300)
+.+.|.++.+.++...+..-. +++.+ .+.++++ -.+.-++.+++.|...++.++
T Consensus 175 i~~a~~vi~~~~~d~~n~~~~~~ar~~~-~~~~iiar~~~~~~~~~l~~~G~d~vi~~~ 232 (336)
T 1lnq_A 175 VRGARAVIVDLESDSETIHCILGIRKID-ESVRIIAEAERYENIEQLRMAGADQVISPF 232 (336)
T ss_dssp STTEEEEEECCSSHHHHHHHHHHHHTTC-TTSEEEEECSSGGGHHHHHHTTCSEEECHH
T ss_pred hhhccEEEEcCCccHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHcCCCEEEChh
Confidence 357788888777555544432 22221 3445554 477788899999998765444
No 381
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=33.27 E-value=92 Score=26.99 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=26.5
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 47 ~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
++.+|+||||...+. ...+++.|.+.|.+|+.+
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 57 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGL 57 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 366899999988653 468889999999988765
No 382
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=33.27 E-value=86 Score=27.09 Aligned_cols=110 Identities=12% Similarity=-0.045 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCC-cHH-HHHHcCCCCEEEEEChHHHHHHHHHhcccCCCC
Q 022234 176 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQT-VLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 253 (300)
Q Consensus 176 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~~~-~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~ 253 (300)
.+++|.+++.. +.+.+.|+ .++ ++.+++..+..-. +.. ....+...|+++.|..+-+..=+..+-+.-...
T Consensus 140 ~g~kV~vIG~~---P~i~~~l~-~~~---~v~V~d~~p~~g~~p~~~~e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~~a 212 (270)
T 2h1q_A 140 KGKKVGVVGHF---PHLESLLE-PIC---DLSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNA 212 (270)
T ss_dssp TTSEEEEESCC---TTHHHHHT-TTS---EEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTS
T ss_pred CCCEEEEECCC---HHHHHHHh-CCC---CEEEEECCCCCCCCChHHHHHHhhcCCEEEEEeeeeecCCHHHHHHhCccC
Confidence 57899999885 44555554 454 5667777654322 222 222357899999999987654443332221123
Q ss_pred ceEEEeCHHHHH--HHHHcCCCeEEecCCCCHHHHHHHHHH
Q 022234 254 NSVACIGETTAS--AAKRLGLKNVYYPTHPGLEGWVDSILE 292 (300)
Q Consensus 254 ~~vv~IG~~Ta~--~l~~~G~~~~~v~~~p~~~~l~~ai~~ 292 (300)
..++.+||+|.- .+-++|+..+-=..-.+.+.+++.|.+
T Consensus 213 ~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~D~~~~~~~i~~ 253 (270)
T 2h1q_A 213 RRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAG 253 (270)
T ss_dssp SEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTT
T ss_pred CeEEEEecChhhhHHHHhcCcCEEEEeEecCHHHHHHHHHc
Confidence 488889998742 344578875422222477888877753
No 383
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=33.04 E-value=1.8e+02 Score=23.01 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=49.5
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCCEEEeee-----------eEeeeC--CCchhHHHhhhcCCccEEEEeCh-----
Q 022234 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNDTIFDWIIITSP----- 110 (300)
Q Consensus 50 g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~-----------i~~~~~--~~~~~l~~~l~~~~~d~ivFTS~----- 110 (300)
.|+||||...+ -...+++.|.+.|.+|..+-- ++.... .+.+.+.+.+ ..+|.||.+..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~vi~~a~~~~~~ 81 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVC--KGADAVISAFNPGWNN 81 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHH--TTCSEEEECCCC----
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHh--cCCCEEEEeCcCCCCC
Confidence 47999998765 346889999999988876532 222222 1333444443 46899988753
Q ss_pred --------HHHHHHHHHHHHcCCCCceEEEEcc
Q 022234 111 --------EAGSVFLEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 111 --------~av~~~~~~l~~~~~~~~~i~aVG~ 135 (300)
.+...+.+.+.+.+. .+++.++.
T Consensus 82 ~~~~~~n~~~~~~l~~~~~~~~~--~~~v~~Ss 112 (227)
T 3dhn_A 82 PDIYDETIKVYLTIIDGVKKAGV--NRFLMVGG 112 (227)
T ss_dssp --CCSHHHHHHHHHHHHHHHTTC--SEEEEECC
T ss_pred hhHHHHHHHHHHHHHHHHHHhCC--CEEEEeCC
Confidence 344556666655432 25555554
No 384
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=33.04 E-value=1.3e+02 Score=21.28 Aligned_cols=111 Identities=12% Similarity=0.072 Sum_probs=59.3
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhc-------CCccEEEEe----ChHHHHHHH
Q 022234 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLND-------TIFDWIIIT----SPEAGSVFL 117 (300)
Q Consensus 50 g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~-------~~~d~ivFT----S~~av~~~~ 117 (300)
+++||+.-... ....+...|++.|+... +....+..+....+.. ..+|.|+.- ..++.+ +.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~------v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~-~~ 74 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHE------VVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGRE-VL 74 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCE------EEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHH-HH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCce------EEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHH-HH
Confidence 67888887664 45678888998887321 1111223333334433 578988864 234444 34
Q ss_pred HHHHHcC-CCCceEEEEc-cchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcc
Q 022234 118 EAWKEAG-TPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 171 (300)
Q Consensus 118 ~~l~~~~-~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 171 (300)
+.+++.. ..+.+++.+. ........+.+.. |.. ++++...+.+.|.+.+.
T Consensus 75 ~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~l~~~i~ 126 (140)
T 1k68_A 75 AEIKSDPTLKRIPVVVLSTSINEDDIFHSYDL---HVN-CYITKSANLSQLFQIVK 126 (140)
T ss_dssp HHHHHSTTGGGSCEEEEESCCCHHHHHHHHHT---TCS-EEEECCSSHHHHHHHHH
T ss_pred HHHHcCcccccccEEEEecCCcHHHHHHHHHh---chh-heecCCCCHHHHHHHHH
Confidence 4455533 1356666554 3333333333222 443 34555567777776654
No 385
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=32.93 E-value=69 Score=27.38 Aligned_cols=67 Identities=21% Similarity=0.108 Sum_probs=42.5
Q ss_pred CCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHH
Q 022234 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGS 114 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~ 114 (300)
-.+|.|++|.++.+... ...+...|++.|+.+..+ ++.+.....+....+..+..|+.+...+....
T Consensus 133 ~~DL~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v---~~~~~~~~~~~~~al~~G~vDa~~~~~p~~~~ 200 (346)
T 3qsl_A 133 PADLKGRKIGVTAPGSSTNMVVNFFLAKHGLKASDV---SFIGVGAGAGAVTALRSGQIDAISNTDPVVSM 200 (346)
T ss_dssp GGGGTTCEEEESSTTSHHHHHHHHHHHHTTCCGGGS---EEEECCSSHHHHHHHHHTSCSEEEEETTHHHH
T ss_pred hHHcCCCEEEECCCCcHHHHHHHHHHHHcCCCHHHe---EEEecCCcHHHHHHHHcCCccEEEecchhHHH
Confidence 35688999999965433 345567788999875322 33333322344445556789999887776543
No 386
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=32.90 E-value=1.3e+02 Score=25.84 Aligned_cols=82 Identities=15% Similarity=-0.023 Sum_probs=51.0
Q ss_pred CCCCeEEEeC-CCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEE-eChHHHHHHHHHH
Q 022234 48 NSNPKVVVTR-ERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIII-TSPEAGSVFLEAW 120 (300)
Q Consensus 48 l~g~~VlitR-~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivF-TS~~av~~~~~~l 120 (300)
+..++|.+.. +.. ..+.+.+.++++|+++...- +... ..+.......+.....|.|++ .+......++.++
T Consensus 147 ~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~-~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 224 (366)
T 3td9_A 147 LGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG-DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQA 224 (366)
T ss_dssp SCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT-CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHH
T ss_pred cCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC-CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHH
Confidence 3457777763 222 23556788899999876544 3321 224333323333467899998 7777788888888
Q ss_pred HHcCCCCceEEE
Q 022234 121 KEAGTPNVRIGV 132 (300)
Q Consensus 121 ~~~~~~~~~i~a 132 (300)
.+.+.+ .+++.
T Consensus 225 ~~~g~~-~~~~~ 235 (366)
T 3td9_A 225 RQLGFT-GYILA 235 (366)
T ss_dssp HHTTCC-SEEEE
T ss_pred HHcCCC-ceEEe
Confidence 888763 55544
No 387
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=32.81 E-value=97 Score=27.53 Aligned_cols=80 Identities=16% Similarity=0.052 Sum_probs=45.8
Q ss_pred CCeEEEe-CCCCc-----hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH-------HHHHH
Q 022234 50 NPKVVVT-RERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE-------AGSVF 116 (300)
Q Consensus 50 g~~Vlit-R~~~~-----~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~-------av~~~ 116 (300)
+++|++. .+..+ ++.+++.+.+.|+++..+.+ ... +...+.. ....+|.|||.|+. .++.|
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~---~~~-~~~~~~~--~~~~~d~ii~gsp~~~~~~~~~~~~~ 325 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWC---KAC-HHSQIMS--EISDAGAVIVGSPTHNNGILPYVAGT 325 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEET---TTS-CHHHHHH--HHHTCSEEEEECCCBTTBCCHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEEC---CCC-CHHHHHH--HHHHCCEEEEECCccCCCchHHHHHH
Confidence 4666655 33333 23345566666765543332 211 2222211 34689999999963 57888
Q ss_pred HHHHHHcCCCCceEEEEcc
Q 022234 117 LEAWKEAGTPNVRIGVVGA 135 (300)
Q Consensus 117 ~~~l~~~~~~~~~i~aVG~ 135 (300)
++.+....+.+.+++++|.
T Consensus 326 l~~l~~~~l~~k~~~~f~t 344 (402)
T 1e5d_A 326 LQYIKGLRPQNKIGGAFGS 344 (402)
T ss_dssp HHHHHHTCCCSCEEEEEEE
T ss_pred HHHhhhcccCCCEEEEEEc
Confidence 8877665556677777763
No 388
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=32.77 E-value=1.8e+02 Score=22.93 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=60.6
Q ss_pred eEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceE
Q 022234 52 KVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRI 130 (300)
Q Consensus 52 ~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i 130 (300)
+||+.-... ....+...|+..|+++... .+..+....+....+|.|+....++.+.. ..+.+. ..+.++
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~~~~dlvilp~~~g~~~~-~~lr~~-~~~~~i 71 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLMDIRNYDLVMVSDKNALSFV-SRIKEK-HSSIVV 71 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEE--------SSHHHHHHHHTTSCCSEEEECCTTHHHHH-HHHHHH-CTTSEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEE--------CCHHHHHHHHhcCCCCEEEeCCCCHHHHH-HHHHhC-CCCCcE
Confidence 577765543 3466778888888865421 12233333444567999994445666544 445554 336777
Q ss_pred EEEccc-hHHHHHHHhhccCCCccccccCCCC-cHHHHHHhcccCC
Q 022234 131 GVVGAG-TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNG 174 (300)
Q Consensus 131 ~aVG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~ 174 (300)
+.+... ......+.+.. |.. +++.... +.+.|...+....
T Consensus 72 i~lt~~~~~~~~~~~~~~---Ga~-~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 72 LVSSDNPTSEEEVHAFEQ---GAD-DYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp EEEESSCCHHHHHHHHHH---TCS-EEEETTCSCTHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHc---CCC-EEEECCCCCHHHHHHHHHHHh
Confidence 766433 33332222222 544 3455556 7778887776543
No 389
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=32.62 E-value=1.7e+02 Score=23.44 Aligned_cols=124 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred ccccCCCCCCCeEEEeCCCCchH---HHHHHHHhCCCCEEEeeeeEeeeCCCch---hHHHhhhcCCccEEEEeChHHHH
Q 022234 41 ATSASASNSNPKVVVTRERGKNG---KLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNDTIFDWIIITSPEAGS 114 (300)
Q Consensus 41 ~~~~~~~l~g~~VlitR~~~~~~---~l~~~L~~~G~~v~~~P~i~~~~~~~~~---~l~~~l~~~~~d~ivFTS~~av~ 114 (300)
++-+.+-..+|+|.|--....-+ .+.+.|++.|++|+.+-....++.+-++ .+.+.+..+.+|.-|..-..++-
T Consensus 11 ~~~~~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 90 (169)
T 3ph3_A 11 SSGLVPRGSHMKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLG 90 (169)
T ss_dssp ----------CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHH
T ss_pred ccCCcccCCCCEEEEEeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHH
Q ss_pred HHHHHHHHcCCCCceEEEE-ccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 115 VFLEAWKEAGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 115 ~~~~~l~~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
.... -...++++.+.+ -+.+++..+++- .-++-.++....+.+++..|.+
T Consensus 91 ~sIa---ANKv~GIRAAlc~d~~sA~~aR~hN-----nANVL~lG~Rvig~~lA~~Iv~ 141 (169)
T 3ph3_A 91 ISIA---ANKVPGIRAAVCTNSYMARMSREHN-----DANILALGERVVGLDLALDIVD 141 (169)
T ss_dssp HHHH---HTTSTTCCEEECSSHHHHHHHHHTT-----CCSEEEEETTTSCHHHHHHHHH
T ss_pred HHHH---hhcCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCHHHHHHHHH
No 390
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=32.53 E-value=45 Score=28.39 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=47.6
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hc-CCccEEE--EeChHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-ND-TIFDWII--ITSPEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~-~~~d~iv--FTS~~av~~~~~~l 120 (300)
..+.||++|||..... ...+++.|.+.|++|+.+-. +.+.+.... .. .....+. +++..+++.+++..
T Consensus 25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r-------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 97 (277)
T 3gvc_A 25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADI-------DGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDAC 97 (277)
T ss_dssp --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEES-------SHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC-------CHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHH
Confidence 5688999999987654 56899999999998875421 112222222 11 1222221 37888888888766
Q ss_pred HHc-CCCCceEEEEc
Q 022234 121 KEA-GTPNVRIGVVG 134 (300)
Q Consensus 121 ~~~-~~~~~~i~aVG 134 (300)
.+. +.-+.-|.+.|
T Consensus 98 ~~~~g~iD~lvnnAg 112 (277)
T 3gvc_A 98 VAAFGGVDKLVANAG 112 (277)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 543 32244444444
No 391
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=32.33 E-value=1.5e+02 Score=21.65 Aligned_cols=109 Identities=12% Similarity=0.139 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEE----ChHHHHHHHHHhcc-
Q 022234 177 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA----SPSAVRSWVNLISD- 248 (300)
Q Consensus 177 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivft----S~s~v~~~~~~~~~- 248 (300)
+.+||++-.+.. +..|.+.|+..|+.|.. +. ...+.++.+ ..+|+|+.= ..++.+ ++..+..
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlvl~D~~mp~~~g~~-~~~~lr~~ 83 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLC---VN------GAEQVLDAMAEEDYDAVIVDLHMPGMNGLD-MLKQLRVM 83 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEE---ES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHH-HHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEE---eC------CHHHHHHHHhcCCCCEEEEeCCCCCCCHHH-HHHHHHhc
Confidence 458998877654 67788888888865532 11 122233322 478888873 222333 3333321
Q ss_pred --cCCCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 249 --TEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 249 --~~~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
......+++.++ +.....+.+.|..- ++....+.+.|+++|.+....
T Consensus 84 ~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~-~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 84 QASGMRYTPVVVLSADVTPEAIRACEQAGARA-FLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp HHTTCCCCCEEEEESCCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHC--
T ss_pred hhccCCCCeEEEEeCCCCHHHHHHHHHcChhh-eeeCCCCHHHHHHHHHHHHHh
Confidence 112345555543 45566777889874 677778999999999876643
No 392
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=32.26 E-value=3.2e+02 Score=25.53 Aligned_cols=214 Identities=11% Similarity=0.093 Sum_probs=113.7
Q ss_pred CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEcc-ch
Q 022234 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA-GT 137 (300)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~~~i~aVG~-~T 137 (300)
.+..++.+.|++.|+++..+.. .....+++. +.++.+.-+..++.......+.|++. +.+-+..--+|. .|
T Consensus 233 gD~~eik~lL~~~Gi~v~~~~~----g~~t~~ei~---~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~p~G~~~T 305 (492)
T 3u7q_A 233 GDAWSSRILLEEMGLRCVAQWS----GDGSISEIE---LTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKT 305 (492)
T ss_dssp TTTHHHHHHHHHTTCEEEEEEE----TTCCHHHHH---HGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHH
T ss_pred hhHHHHHHHHHHCCCeEEEEeC----CCCCHHHHH---hhhcCcEEEEEChHHHHHHHHHHHHHhCCceEecCccCHHHH
Confidence 4568999999999999986531 111233333 34566677777776666666666543 332111112553 47
Q ss_pred HHHHHHHhhccCCCccccccCCC---C---cHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEee
Q 022234 138 ASIFEEVIQSSKCSLDVAFSPSK---A---TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 138 a~~L~~~~~~~~~G~~~~~~p~~---~---~~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY 209 (300)
.+.|++.. .+.|.. .|.. . .-..+...|... ...|+|+.+..+....-.+...|.+.|++|..+-++
T Consensus 306 ~~~L~~ia--~~~g~~---~~~~~e~~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~ElGm~vv~~gt~ 380 (492)
T 3u7q_A 306 IESLRAIA--AKFDES---IQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGYE 380 (492)
T ss_dssp HHHHHHHH--TTSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECBSSSHHHHTHHHHHTTTCEEEEEEES
T ss_pred HHHHHHHH--HHhCCc---chHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHHCCCEEEEEeCC
Confidence 77777762 111321 1110 0 001112222211 126799998877766667888999999988664443
Q ss_pred eeeeCCCCcHHHHHHcCCCCEEEEE--ChHHHHHHHHHhcccCCCCceEEEeCHHHHHHHHHcCCCeEEec----CCC--
Q 022234 210 TTEPVHHVDQTVLKQALSIPVVAVA--SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYP----THP-- 281 (300)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~d~Ivft--S~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta~~l~~~G~~~~~v~----~~p-- 281 (300)
... ....+.+.. ....+.+++. +...++.++...+ .-++.-|......+++.|+.-..+. ..|
T Consensus 381 ~~~--~~d~~~l~~-~~~~~~~i~~~~d~~el~~~i~~~~------pDL~ig~~~~~~ia~k~gIP~~~~~~~d~~~p~~ 451 (492)
T 3u7q_A 381 FAH--NDDYDRTMK-EMGDSTLLYDDVTGYEFEEFVKRIK------PDLIGSGIKEKFIFQKMGIPFREMHSWDYSGPYH 451 (492)
T ss_dssp SCC--HHHHHHHHT-TSCTTCEEEESCBHHHHHHHHHHHC------CSEEEECHHHHHHHHHTTCCEEESSSGGGCCCCS
T ss_pred CCC--HHHHHHHHH-hCCCCcEEEcCCCHHHHHHHHHhcC------CcEEEeCcchhHHHHHcCCCEEeccccccCCCcE
Confidence 211 111111211 1233556665 4555555554432 3455557777778888888643211 123
Q ss_pred CHHHHHHHHHHHH
Q 022234 282 GLEGWVDSILEAL 294 (300)
Q Consensus 282 ~~~~l~~ai~~~~ 294 (300)
..++.++.+.+..
T Consensus 452 GY~Ga~~l~~~i~ 464 (492)
T 3u7q_A 452 GFDGFAIFARDMD 464 (492)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHH
Confidence 3566655555443
No 393
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=32.08 E-value=66 Score=26.43 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcc
Q 022234 176 KKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISD 248 (300)
Q Consensus 176 ~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~ 248 (300)
.+++|+|+-...+ -....+.|+..|+++..+.+.+ ...++..+.+.+.|.|+++-.++.. +++.+.+
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-----~~~~~~~~~l~~ad~I~l~GG~~~~-l~~~L~~ 99 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT-----ESLGEITTKLRKNDFIYVTGGNTFF-LLQELKR 99 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-----SCHHHHHHHHHHSSEEEECCSCHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-----CChHHHHHHHHhCCEEEECCCCHHH-HHHHHHH
Confidence 4689988864332 2467788999998776554432 2233333445678999999877774 5565555
Q ss_pred cC
Q 022234 249 TE 250 (300)
Q Consensus 249 ~~ 250 (300)
.+
T Consensus 100 ~g 101 (206)
T 3l4e_A 100 TG 101 (206)
T ss_dssp HT
T ss_pred CC
Confidence 43
No 394
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=32.06 E-value=49 Score=27.91 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=68.2
Q ss_pred CCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEe-----eeCCCchhHHH---hhhcCCccEEE----EeChH
Q 022234 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQH-----AQGPDTDRLSS---VLNDTIFDWII----ITSPE 111 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~-----~~~~~~~~l~~---~l~~~~~d~iv----FTS~~ 111 (300)
..++.||+||||..... ...+++.|.++|++|+.+-.-.. .+....+.+.. .+.....+..+ +++..
T Consensus 8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 87 (278)
T 3sx2_A 8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRE 87 (278)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHH
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 36789999999988653 46899999999999876532100 00011122221 11111122222 36788
Q ss_pred HHHHHHHHHHHc-CCCCceEEEEccc----hHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEEEEEcCC
Q 022234 112 AGSVFLEAWKEA-GTPNVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA 186 (300)
Q Consensus 112 av~~~~~~l~~~-~~~~~~i~aVG~~----Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~ 186 (300)
+++.+++.+.+. +.-+.-|.+.|-. +.+..++.+ . +.+...-.....++..+.+.. .+++|+++.+.
T Consensus 88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-----~--~N~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~ 159 (278)
T 3sx2_A 88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVI-----D--VNLTGVYHTIKVAIPTLVKQG-TGGSIVLISSS 159 (278)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHH-----H--HHTHHHHHHHHHHHHHHHHHC-SCEEEEEECCG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHH-----H--HHhHHHHHHHHHHHHHHHhCC-CCcEEEEEccH
Confidence 888888766543 3224444444422 333333332 1 111211122334444443321 24688888775
Q ss_pred C
Q 022234 187 K 187 (300)
Q Consensus 187 ~ 187 (300)
.
T Consensus 160 ~ 160 (278)
T 3sx2_A 160 A 160 (278)
T ss_dssp G
T ss_pred H
Confidence 4
No 395
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=31.92 E-value=84 Score=26.59 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=29.1
Q ss_pred CCChhHHHHHHHhCCCeeEEEEeeeee-eCCCCcHHHHHHcCCCCEEEEEC
Q 022234 186 AKASNEIEEGLSNRGFEVVRLNTYTTE-PVHHVDQTVLKQALSIPVVAVAS 235 (300)
Q Consensus 186 ~~~~~~L~~~L~~~G~~v~~~~vY~~~-~~~~~~~~~~~~l~~~d~IvftS 235 (300)
..+...|.+.|+..|++|+.+...+.. ..+.. .+.+.++|+|||..
T Consensus 39 ~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~----~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 39 EEGATWLLECLRKGGVDIDYMPAHTVQIAFPES----IDELNRYDVIVISD 85 (256)
T ss_dssp EESCHHHHHHHHHTTCEEEEECHHHHHHCCCCS----HHHHHTCSEEEEES
T ss_pred cccHHHHHHHHHhcCceEEEEecccchhhCCcC----hhHHhcCCEEEEeC
Confidence 346678999999999888766432110 11111 22356899999986
No 396
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=31.90 E-value=1.9e+02 Score=22.87 Aligned_cols=98 Identities=7% Similarity=0.068 Sum_probs=53.8
Q ss_pred cCCCCCCCeEEEeCCCCch----HHHHHHHHhCCCCEEEeeeeE---eeeC-------CCchhHHHhhhcCCccEEEEeC
Q 022234 44 ASASNSNPKVVVTRERGKN----GKLIKALAKHRIDCLELPLIQ---HAQG-------PDTDRLSSVLNDTIFDWIIITS 109 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~~~~----~~l~~~L~~~G~~v~~~P~i~---~~~~-------~~~~~l~~~l~~~~~d~ivFTS 109 (300)
-+....+++|+|.-..+-. ....+.|+..|+++..+-.-. +... ++. .+.+ .....||.||+..
T Consensus 17 ~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~-~l~~-~~~~~~D~livpG 94 (193)
T 1oi4_A 17 YKKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDK-SIDE-VTPAEFDALLLPG 94 (193)
T ss_dssp TTTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCE-EGGG-CCGGGCSEEEECC
T ss_pred ehhhccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCC-ChHH-CCcccCCEEEECC
Confidence 3344456788887665322 245778999998887653321 1100 110 1111 1124799999998
Q ss_pred hHHHHHH------HHHHHHcCCCCceEEEEccchHHHHHHH
Q 022234 110 PEAGSVF------LEAWKEAGTPNVRIGVVGAGTASIFEEV 144 (300)
Q Consensus 110 ~~av~~~------~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 144 (300)
..+.+.+ .+.+++....+.++++|..++ ..|.+.
T Consensus 95 G~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~-~lLa~a 134 (193)
T 1oi4_A 95 GHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISA 134 (193)
T ss_dssp BTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTH-HHHHHH
T ss_pred CcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHC
Confidence 7655432 222222222467888888775 466666
No 397
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=31.70 E-value=1.5e+02 Score=21.63 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=61.2
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeC----hHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITS----PEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS----~~av~~~~~~l 120 (300)
....+++||+.-... ....+...|++.|.. +.+....+..+..+.+....+|.|++-- .++.+. .+.+
T Consensus 16 ~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~------~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~-~~~l 88 (150)
T 4e7p_A 16 PRGSHMKVLVAEDQSMLRDAMCQLLTLQPDV------ESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEV-LEWI 88 (150)
T ss_dssp ----CEEEEEECSCHHHHHHHHHHHHTSTTE------EEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHH-HHHH
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHHHhCCCc------EEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHH-HHHH
Confidence 444567899887654 345677788877632 1112222333444444556789888742 234443 4445
Q ss_pred HHcCCCCceEEEEcc-chHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccC
Q 022234 121 KEAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 173 (300)
Q Consensus 121 ~~~~~~~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 173 (300)
++.. .+.+++++.. .......+.+.. |.. ++++...+.+.|.+.+...
T Consensus 89 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~Kp~~~~~l~~~i~~~ 137 (150)
T 4e7p_A 89 RSEK-LETKVVVVTTFKRAGYFERAVKA---GVD-AYVLKERSIADLMQTLHTV 137 (150)
T ss_dssp HHTT-CSCEEEEEESCCCHHHHHHHHHT---TCS-EEEETTSCHHHHHHHHHHH
T ss_pred HHhC-CCCeEEEEeCCCCHHHHHHHHHC---CCc-EEEecCCCHHHHHHHHHHH
Confidence 5543 4566666544 333333332211 544 3556666788888777654
No 398
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=31.69 E-value=2e+02 Score=26.05 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=23.3
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEe
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~ 79 (300)
++|||.-...-...+++.++++|++++.+
T Consensus 2 k~ilI~g~g~~~~~i~~a~~~~G~~vv~v 30 (451)
T 2vpq_A 2 KKVLIANRGEIAVRIIRACRDLGIQTVAI 30 (451)
T ss_dssp CEEEECCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEeCCCHHHHHHHHHHHHcCCEEEEE
Confidence 67999875555667899999999998865
No 399
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=31.51 E-value=1.3e+02 Score=22.02 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCChh-----HHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhccc-C
Q 022234 177 KCTVLYPASAKASN-----EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDT-E 250 (300)
Q Consensus 177 ~~~vL~~rg~~~~~-----~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~-~ 250 (300)
..+||++|+.+... .+.+..+++|+++....+ ......+ .+.++|+|++ +|. +++.++.+++. .
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~----~~~~~~~----~~~~~DvvLL-gPQ-V~y~~~~ik~~~~ 75 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG----AYGAHYD----IMGVYDLIIL-APQ-VRSYYREMKVDAE 75 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEE----ETTSCTT----TGGGCSEEEE-CGG-GGGGHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEc----chHHHHh----hccCCCEEEE-ChH-HHHHHHHHHHHhh
Confidence 35899999988643 345566677876644331 1111111 1346887666 454 44444444432 1
Q ss_pred CCCceEEEeCHHHH
Q 022234 251 QWSNSVACIGETTA 264 (300)
Q Consensus 251 ~~~~~vv~IG~~Ta 264 (300)
..++++.+|.+..-
T Consensus 76 ~~~ipV~vI~~~~Y 89 (108)
T 3nbm_A 76 RLGIQIVATRGMEY 89 (108)
T ss_dssp TTTCEEEECCHHHH
T ss_pred hcCCcEEEeCHHHh
Confidence 23688999987543
No 400
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=31.50 E-value=76 Score=26.62 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=38.9
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCC-CEEEeeeeEeee--CCCchhHHHhhhcCCccEEEEeCh
Q 022234 47 SNSNPKVVVTRERGK-NGKLIKALAKHRI-DCLELPLIQHAQ--GPDTDRLSSVLNDTIFDWIIITSP 110 (300)
Q Consensus 47 ~l~g~~VlitR~~~~-~~~l~~~L~~~G~-~v~~~P~i~~~~--~~~~~~l~~~l~~~~~d~ivFTS~ 110 (300)
.+.+|+||||...+. ...+++.|.+.|. .......++... ..+.+.+.+.+....+|.||.+..
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vih~A~ 70 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKDADLTDTAQTRALFEKVQPTHVIHLAA 70 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEECCTTTCCTTSHHHHHHHHHHSCCSEEEECCC
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCCcccccccccCceecccCCHHHHHHHHhhcCCCEEEECce
Confidence 367899999998753 4688999999986 111111121111 224445555554446899998743
No 401
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=31.41 E-value=2.3e+02 Score=23.58 Aligned_cols=61 Identities=7% Similarity=0.048 Sum_probs=34.2
Q ss_pred hHHHHHHHhhccCCCccccccCCCCcHH---HHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 022234 137 TASIFEEVIQSSKCSLDVAFSPSKATGK---ILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 137 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e---~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 206 (300)
..+++++. |+...+.....+.+ .+++.+..... .-+++.... ..+.+.+.|.+.|+.|..+
T Consensus 34 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~v--dGiI~~~~~-~~~~~~~~l~~~~iPvV~i 97 (295)
T 3hcw_A 34 ISETCNQH------GYGTQTTVSNNMNDLMDEVYKMIKQRMV--DAFILLYSK-ENDPIKQMLIDESMPFIVI 97 (295)
T ss_dssp HHHHHHTT------TCEEEECCCCSHHHHHHHHHHHHHTTCC--SEEEESCCC-TTCHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHC------CCEEEEEcCCCChHHHHHHHHHHHhCCc--CEEEEcCcc-cChHHHHHHHhCCCCEEEE
Confidence 45677777 98887665554443 34444443321 234443333 3345667788888776443
No 402
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=31.35 E-value=1.6e+02 Score=25.47 Aligned_cols=111 Identities=13% Similarity=0.107 Sum_probs=63.2
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCCEEEeee-----------eEeeeC--CCchhHHHhhhcCCccEEEEeChHHHHHH
Q 022234 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNDTIFDWIIITSPEAGSVF 116 (300)
Q Consensus 50 g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~-----------i~~~~~--~~~~~l~~~l~~~~~d~ivFTS~~av~~~ 116 (300)
.++|+|..-..-...+++.|.+.|. +..+.. +..... .+.+.+.+ ....+.|.++.+..+.....
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~-a~i~~a~~vi~~~~~d~~n~ 192 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEK-ANVRGARAVIVDLESDSETI 192 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHH-TCSTTEEEEEECCSSHHHHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHh-cChhhccEEEEcCCccHHHH
Confidence 4578888766566778888888886 554321 111111 12222222 13578999999887654444
Q ss_pred HHH--HHHcCCCCceEEEE--ccchHHHHHHHhhccCCCccccccCCCCcHHHHHHh
Q 022234 117 LEA--WKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 169 (300)
Q Consensus 117 ~~~--l~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~ 169 (300)
.-. +++.+ .+.++++. .+...+.+++. |.+..+.|....+..|++.
T Consensus 193 ~~~~~ar~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~~~~~~~~~l~~~ 242 (336)
T 1lnq_A 193 HCILGIRKID-ESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRS 242 (336)
T ss_dssp HHHHHHHTTC-TTSEEEEECSSGGGHHHHHHT------TCSEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHC-CCCeEEEEECCHHHHHHHHHc------CCCEEEChhHhHHHHHHHH
Confidence 332 23333 35566664 55667788888 9886666654444444443
No 403
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=31.29 E-value=1.5e+02 Score=21.44 Aligned_cols=115 Identities=10% Similarity=0.132 Sum_probs=64.1
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCC-CCEEEeeeeEeeeCCCchhHHHhhhc-CCccEEEEeC----hHHHHHHH
Q 022234 45 SASNSNPKVVVTRERG-KNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLND-TIFDWIIITS----PEAGSVFL 117 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~-~~~~l~~~L~~~G-~~v~~~P~i~~~~~~~~~~l~~~l~~-~~~d~ivFTS----~~av~~~~ 117 (300)
.....+.+|||.-... ....+...|++.| +++.... ...+.+...... ..+|.|++-- .++.+.+
T Consensus 15 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~-------~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~- 86 (146)
T 4dad_A 15 LYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTV-------GRAAQIVQRTDGLDAFDILMIDGAALDTAELAAI- 86 (146)
T ss_dssp CCCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEEC-------CCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHH-
T ss_pred CCcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeC-------CHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHH-
Confidence 3556678999987664 4567888899888 6654322 111222222233 6789888743 3444443
Q ss_pred HHHHHcCCCCceEEEEcc-chHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 118 EAWKEAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 118 ~~l~~~~~~~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
+.+++.. .+.+++++.. .......+.+.. |.. +++....+.+.|...+..
T Consensus 87 ~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~---ga~-~~l~Kp~~~~~L~~~i~~ 137 (146)
T 4dad_A 87 EKLSRLH-PGLTCLLVTTDASSQTLLDAMRA---GVR-DVLRWPLEPRALDDALKR 137 (146)
T ss_dssp HHHHHHC-TTCEEEEEESCCCHHHHHHHHTT---TEE-EEEESSCCHHHHHHHHHH
T ss_pred HHHHHhC-CCCcEEEEeCCCCHHHHHHHHHh---CCc-eeEcCCCCHHHHHHHHHH
Confidence 4454443 4566666544 333433333211 443 355556677888776653
No 404
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=31.23 E-value=77 Score=26.92 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=39.4
Q ss_pred CCEEEEEChHHHHHHHHHhcccCCCCce-EEEeCHHHHHHHHHcCCCe
Q 022234 228 IPVVAVASPSAVRSWVNLISDTEQWSNS-VACIGETTASAAKRLGLKN 274 (300)
Q Consensus 228 ~d~IvftS~s~v~~~~~~~~~~~~~~~~-vv~IG~~Ta~~l~~~G~~~ 274 (300)
-++|-+-|.|++..|.+.+.+.. .++. ++.-|..|++.++++|++.
T Consensus 33 g~vIGLGtGST~~~~i~~L~~~~-~~i~~~V~tS~~t~~~~~~~Gi~l 79 (239)
T 3uw1_A 33 GAVIGVGTGSTANCFIDALAAVK-DRYRGAVSSSVATTERLKSHGIRV 79 (239)
T ss_dssp TCEEEECCSHHHHHHHHHHHTTG-GGSCEEEESSHHHHHHHHHTTCCB
T ss_pred CCEEEECccHHHHHHHHHHHhhh-ccceEEeCCcHHHHHHHHHcCCcE
Confidence 78999999999999999987642 2456 6889999999999999975
No 405
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=31.23 E-value=1.4e+02 Score=25.83 Aligned_cols=94 Identities=9% Similarity=0.122 Sum_probs=52.3
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEE-eChHHHHHHHHHHHH
Q 022234 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIII-TSPEAGSVFLEAWKE 122 (300)
Q Consensus 49 ~g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivF-TS~~av~~~~~~l~~ 122 (300)
..++|.+..... ....+.+.++++|+++.....+... ..+.......+.....|.|++ .+......++.++.+
T Consensus 140 g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~ 218 (364)
T 3lop_A 140 GVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRN-TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRA 218 (364)
T ss_dssp TCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT-SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHH
T ss_pred CCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCC-CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHH
Confidence 346777665432 2346778888899886543222211 123333323333467889888 446667778888888
Q ss_pred cCCCCceEEEEc-cchHHHHHHH
Q 022234 123 AGTPNVRIGVVG-AGTASIFEEV 144 (300)
Q Consensus 123 ~~~~~~~i~aVG-~~Ta~~L~~~ 144 (300)
.+. +.+++... -.....++..
T Consensus 219 ~g~-~~~~i~~~~~~~~~~~~~~ 240 (364)
T 3lop_A 219 RGG-EAQLLGLSSIDPGILQKVA 240 (364)
T ss_dssp TTC-CCEEEECTTSCHHHHHHHH
T ss_pred cCC-CCeEEEeccCChHHHHHHh
Confidence 776 35555443 2333444433
No 406
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=31.19 E-value=1.4e+02 Score=25.96 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=8.2
Q ss_pred eEEEeCHHHHHHHHH
Q 022234 255 SVACIGETTASAAKR 269 (300)
Q Consensus 255 ~vv~IG~~Ta~~l~~ 269 (300)
-++++.+...+.++.
T Consensus 214 g~~~~~~~~~~~~~~ 228 (396)
T 2ch1_A 214 TPISISPKALDVIRN 228 (396)
T ss_dssp EEEEECHHHHHHHHT
T ss_pred EEEEECHHHHHhhhh
Confidence 355556655555543
No 407
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=30.97 E-value=71 Score=26.48 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=14.8
Q ss_pred CCCEEEEEcCC--CC-hhHHHHHHHhCCCee
Q 022234 176 KKCTVLYPASA--KA-SNEIEEGLSNRGFEV 203 (300)
Q Consensus 176 ~~~~vL~~rg~--~~-~~~L~~~L~~~G~~v 203 (300)
+++++|+.++. .+ ...+...|.+.|++|
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V 43 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAEL 43 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCE
Confidence 34566666543 22 334555666666554
No 408
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=30.87 E-value=44 Score=25.14 Aligned_cols=62 Identities=11% Similarity=0.190 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCC-ccEEEEeChH----------HHHHHHHHHHHcCCCCceEEE
Q 022234 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTI-FDWIIITSPE----------AGSVFLEAWKEAGTPNVRIGV 132 (300)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~-~d~ivFTS~~----------av~~~~~~l~~~~~~~~~i~a 132 (300)
.+++.|++.|+++..+++-+.. .. .+.. +|.|||-+|. .++.|++.+....+.+.++++
T Consensus 20 ~i~~~l~~~g~~v~~~~~~~~~----~~------~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~~l~~k~~~v 89 (147)
T 1f4p_A 20 TIARELADAGYEVDSRDAASVE----AG------GLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVAC 89 (147)
T ss_dssp HHHHHHHHHTCEEEEEEGGGCC----ST------TTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGSCCTTCEEEE
T ss_pred HHHHHHHhcCCeeEEEehhhCC----HH------HhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhcccCCCEEEE
Confidence 4445566668776554432211 11 2456 8999886432 455666655443445666666
Q ss_pred Ecc
Q 022234 133 VGA 135 (300)
Q Consensus 133 VG~ 135 (300)
+|-
T Consensus 90 ~~~ 92 (147)
T 1f4p_A 90 FGC 92 (147)
T ss_dssp EEE
T ss_pred Eee
Confidence 655
No 409
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=30.78 E-value=1.9e+02 Score=25.27 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=48.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEee--eCCCchhHHHhhhcCCccEEEEeChHH----------HHHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA--QGPDTDRLSSVLNDTIFDWIIITSPEA----------GSVF 116 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~--~~~~~~~l~~~l~~~~~d~ivFTS~~a----------v~~~ 116 (300)
.|.+|++..|.- ..+...++..|++++.+|+-.-. ...|.+.+.+.+...+...|++++++. ++.+
T Consensus 112 ~gd~vl~~~p~~--~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i 189 (399)
T 1c7n_A 112 PGDGVIIITPVY--YPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKI 189 (399)
T ss_dssp TTCEEEECSSCC--THHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred CCCEEEEcCCCc--HhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHH
Confidence 477899988764 34556777889999999875211 113556676666434677888877654 6666
Q ss_pred HHHHHHcC
Q 022234 117 LEAWKEAG 124 (300)
Q Consensus 117 ~~~l~~~~ 124 (300)
.+.+.+.+
T Consensus 190 ~~~~~~~~ 197 (399)
T 1c7n_A 190 KDIVLKSD 197 (399)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHcC
Confidence 66666543
No 410
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=30.73 E-value=1.8e+02 Score=23.55 Aligned_cols=62 Identities=8% Similarity=0.104 Sum_probs=33.8
Q ss_pred hHHHHHHHhhccCCCccccccCCCCcHHH---HHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 022234 137 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 206 (300)
Q Consensus 137 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 206 (300)
..+++++. |+...+.....+.+. +++.+..... .-+++...........+.|.+.|+.+..+
T Consensus 24 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~v--dgiIi~~~~~~~~~~~~~~~~~~iPvV~~ 88 (272)
T 3o74_A 24 LEQGARAR------GYQLLIASSDDQPDSERQLQQLFRARRC--DALFVASCLPPEDDSYRELQDKGLPVIAI 88 (272)
T ss_dssp HHHHHHHT------TCEEEEEECTTCHHHHHHHHHHHHHTTC--SEEEECCCCCSSCCHHHHHHHTTCCEEEE
T ss_pred HHHHHHHC------CCEEEEEeCCCCHHHHHHHHHHHHHcCC--CEEEEecCccccHHHHHHHHHcCCCEEEE
Confidence 45667777 888777655555443 3334433321 23444433322345566788888776443
No 411
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=30.70 E-value=48 Score=28.09 Aligned_cols=102 Identities=16% Similarity=0.024 Sum_probs=51.5
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccE
Q 022234 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDW 104 (300)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ 104 (300)
+-+..++.|++... ....+.||++|||..... ...+++.|.+.|+.|+..-.-... ..+.+.+.+.......
T Consensus 11 ~~~~~~~~~~~~mm----~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~l~~~~~~~ 83 (271)
T 3v2g_A 11 VDLGTENLYFQSMM----TSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAE---RAQAVVSEIEQAGGRA 83 (271)
T ss_dssp ---------CHHHH----TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCE
T ss_pred ccccccccchhhhc----cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHhcCCcE
Confidence 33344445555421 225688999999988653 468999999999987654211000 0112222221112222
Q ss_pred EE----EeChHHHHHHHHHHHHc-CCCCceEEEEc
Q 022234 105 II----ITSPEAGSVFLEAWKEA-GTPNVRIGVVG 134 (300)
Q Consensus 105 iv----FTS~~av~~~~~~l~~~-~~~~~~i~aVG 134 (300)
.. +++..+++.+++...+. +.-+.-|.+.|
T Consensus 84 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg 118 (271)
T 3v2g_A 84 VAIRADNRDAEAIEQAIRETVEALGGLDILVNSAG 118 (271)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 22 36788888887766543 32244444444
No 412
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=30.69 E-value=1e+02 Score=24.66 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=33.0
Q ss_pred CeEEEeCCC-CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 51 PKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 51 ~~VlitR~~-~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
++|+|.-.. +....+.+.|++.|+++..++. + + .+..+|.||++-+..
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~------~--~------~l~~~d~lil~G~g~ 51 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQD------P--K------AHEEADLLVLPGQGH 51 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS------T--T------SCSSCSEEEECCCSC
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecC------h--H------HcccCCEEEECCCCc
Confidence 578887432 3457789999999998876541 1 1 245799999977343
No 413
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=30.66 E-value=1.6e+02 Score=24.81 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=58.0
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEE-EEChHHHHHHHHHhcccCCCCce
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA-VASPSAVRSWVNLISDTEQWSNS 255 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~Iv-ftS~s~v~~~~~~~~~~~~~~~~ 255 (300)
-+.++..+... ...+.+...+.|.++.- .+..... ..+.+.|++| ||+|+++...++.+.+. +++
T Consensus 13 ~~~~v~Ga~GrMG~~i~~~~~~~~~elv~--~id~~~~--------~~l~~~DVvIDFT~P~a~~~~~~~~~~~---g~~ 79 (228)
T 1vm6_A 13 MKYGIVGYSGRMGQEIQKVFSEKGHELVL--KVDVNGV--------EELDSPDVVIDFSSPEALPKTVDLCKKY---RAG 79 (228)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE--EEETTEE--------EECSCCSEEEECSCGGGHHHHHHHHHHH---TCE
T ss_pred ceeEEEEecCHHHHHHHHHHhCCCCEEEE--EEcCCCc--------ccccCCCEEEECCCHHHHHHHHHHHHHc---CCC
Confidence 35666655443 22345555667765533 2332110 1134689999 99999999988877664 344
Q ss_pred EEE----eCHHHHHHHHHcCC-CeEEecCCCCHHH-----HHHHHHHHH
Q 022234 256 VAC----IGETTASAAKRLGL-KNVYYPTHPGLEG-----WVDSILEAL 294 (300)
Q Consensus 256 vv~----IG~~Ta~~l~~~G~-~~~~v~~~p~~~~-----l~~ai~~~~ 294 (300)
+++ +.+.--+.+++..- ..++.+.+.+..- +++...+++
T Consensus 80 ~ViGTTG~~~~~~~~l~~~a~~~~vv~apNfSlGvnll~~l~~~aA~~l 128 (228)
T 1vm6_A 80 LVLGTTALKEEHLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVL 128 (228)
T ss_dssp EEECCCSCCHHHHHHHHHHTTTSEEEECSCCCHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCHHHHHHHHHHHhhCCEEEeccccHHHHHHHHHHHHHHHhc
Confidence 443 23443344554322 3567788888753 444444444
No 414
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=30.65 E-value=88 Score=27.57 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=25.2
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCC
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRID 75 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~ 75 (300)
..+.|+++||+...+-+...+..|.+.|+.
T Consensus 150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~ 179 (315)
T 3tnl_A 150 HDIIGKKMTICGAGGAATAICIQAALDGVK 179 (315)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCS
T ss_pred CCccCCEEEEECCChHHHHHHHHHHHCCCC
Confidence 457899999999876667888999999984
No 415
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=30.51 E-value=1.2e+02 Score=25.94 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=40.3
Q ss_pred CCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeee-------------------eEeee--CCCchhHHHhhhcCCccEEE
Q 022234 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPL-------------------IQHAQ--GPDTDRLSSVLNDTIFDWII 106 (300)
Q Consensus 49 ~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~-------------------i~~~~--~~~~~~l~~~l~~~~~d~iv 106 (300)
.+|+||||..... ...+++.|.+.|++|+.+-- .+... ..+.+.+.+.+.....|.||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 4689999987653 46889999999999876521 11221 22334455555445789888
Q ss_pred EeCh
Q 022234 107 ITSP 110 (300)
Q Consensus 107 FTS~ 110 (300)
....
T Consensus 84 h~A~ 87 (341)
T 3enk_A 84 HFAA 87 (341)
T ss_dssp ECCC
T ss_pred ECcc
Confidence 7653
No 416
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=30.39 E-value=96 Score=27.15 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=48.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEee--eCCCchhHHHhhhcCCccEEEEeChHH----------HHHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA--QGPDTDRLSSVLNDTIFDWIIITSPEA----------GSVF 116 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~--~~~~~~~l~~~l~~~~~d~ivFTS~~a----------v~~~ 116 (300)
.|.+|++..|.- ..+...++..|++++.+|+-.-. ...+.+.+.+.+...+...|++++++. ++.+
T Consensus 110 ~gd~vl~~~p~y--~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l 187 (390)
T 1d2f_A 110 TGEGVVIHTPAY--DAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIM 187 (390)
T ss_dssp TTCEEEEEESCC--HHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHH
T ss_pred CCCEEEEcCCCc--HHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHH
Confidence 477899988864 44666778889999998874321 013556676666433577888887643 4566
Q ss_pred HHHHHHcC
Q 022234 117 LEAWKEAG 124 (300)
Q Consensus 117 ~~~l~~~~ 124 (300)
.+.+.+.+
T Consensus 188 ~~~~~~~~ 195 (390)
T 1d2f_A 188 ADLCERHG 195 (390)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 66666543
No 417
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=30.33 E-value=39 Score=29.77 Aligned_cols=62 Identities=6% Similarity=0.030 Sum_probs=40.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE 111 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~ 111 (300)
.|.+|+++.+.-........++..|++++.+|+-. ....|.+.+.+.+...+...|++++++
T Consensus 92 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~ 153 (396)
T 2ch1_A 92 EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP-DRPFSLETLARAIELHQPKCLFLTHGD 153 (396)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TSCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC-CCCCCHHHHHHHHHhCCCCEEEEECCC
Confidence 57789999887544333456788899998888632 112345666666532256788888764
No 418
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=30.28 E-value=1.4e+02 Score=25.89 Aligned_cols=146 Identities=16% Similarity=0.091 Sum_probs=80.2
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh----hcCCccEEEEeChHH--H--HHHHHHHH-HcCCCCceEEEEcc
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL----NDTIFDWIIITSPEA--G--SVFLEAWK-EAGTPNVRIGVVGA 135 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l----~~~~~d~ivFTS~~a--v--~~~~~~l~-~~~~~~~~i~aVG~ 135 (300)
-.+.+++.|++...+.+-+.. ..+++...+ .+...|.|+..-|-- + +...+... +..-|+.. +
T Consensus 54 k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDg~~-----~ 125 (285)
T 3p2o_A 54 KAKACEECGIKSLVYHLNENI---TQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFH-----P 125 (285)
T ss_dssp HHHHHHHHTCEEEEEEECTTC---CHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCCS-----H
T ss_pred HHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcccccccCC-----H
Confidence 345667779888765542111 123444444 357899999988722 1 22333221 11122332 1
Q ss_pred chHHHHHHHhhccCCCcccc-ccCCCCcHHHHHHhcccCC--CCCCEEEEEc-CCCChhHHHHHHHhCCCeeEEEEeeee
Q 022234 136 GTASIFEEVIQSSKCSLDVA-FSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTT 211 (300)
Q Consensus 136 ~Ta~~L~~~~~~~~~G~~~~-~~p~~~~~e~L~~~L~~~~--~~~~~vL~~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~ 211 (300)
. +.-+-.. |- .. +.| -|+.+.++.|.... ..|++++++. |+....-+...|...|+.|+.+.-+
T Consensus 126 ~--N~g~l~~-----g~-~~g~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~-- 193 (285)
T 3p2o_A 126 I--NVGYLNL-----GL-ESGFLP--CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK-- 193 (285)
T ss_dssp H--HHHHHHT-----TC-CSSCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--
T ss_pred h--hhhhhhc-----CC-CCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC--
Confidence 1 1111111 32 12 343 25677777776553 3789999997 5545666888899999987654321
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEECh
Q 022234 212 EPVHHVDQTVLKQALSIPVVAVASP 236 (300)
Q Consensus 212 ~~~~~~~~~~~~~l~~~d~IvftS~ 236 (300)
.. .+.+.+...|+|+-+-+
T Consensus 194 ---t~---~L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 194 ---TK---DLSLYTRQADLIIVAAG 212 (285)
T ss_dssp ---CS---CHHHHHTTCSEEEECSS
T ss_pred ---ch---hHHHHhhcCCEEEECCC
Confidence 11 13333568899888776
No 419
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=30.21 E-value=59 Score=27.72 Aligned_cols=63 Identities=5% Similarity=-0.047 Sum_probs=37.4
Q ss_pred CCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHH
Q 022234 176 KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVN 244 (300)
Q Consensus 176 ~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~IvftS~s~v~~~~~ 244 (300)
+|++|.++ .|....-.|...|++.|.+|. .+.....+.+....+ +++|+.+..-|.......+
T Consensus 95 kGK~Iav~~~gs~~~~ll~~~L~~~Gldv~------~~~~~~~~~~~~~al~~G~vDa~~~~eP~~~~a~~~ 160 (283)
T 3hn0_A 95 KEPALYVFGNGTTPDILTRYYLGRQRLDYP------LNYAFNTAGEITQGILAGKVNRAVLGEPFLSIALRK 160 (283)
T ss_dssp CSCCEECSSTTSHHHHHHHHHHHHHTCCCC------EECSCCSHHHHHHHHHHTSCSEEEECTTHHHHHHHH
T ss_pred CCCEEEecCCCCcHHHHHHHHHHHcCCceE------EEEccCCHHHHHHHHHcCCCCEEEecccHHHHHHhh
Confidence 67899887 444444556667888897432 111220223334333 6899999888877654433
No 420
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=30.13 E-value=52 Score=28.05 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=43.6
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA 123 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~ 123 (300)
-.|.||++|||....+ ...+++.|.+.|++|+..-.-+. +.+.+.+. -..| +|+..+++.+++...+.
T Consensus 7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~------~~~~~~~~-~~~D---v~~~~~v~~~~~~~~~~ 75 (261)
T 4h15_A 7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARP------EGLPEELF-VEAD---LTTKEGCAIVAEATRQR 75 (261)
T ss_dssp CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC------TTSCTTTE-EECC---TTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch------hCCCcEEE-EEcC---CCCHHHHHHHHHHHHHH
Confidence 4688999999987653 46889999999999876432111 11111110 0112 47888898888876553
No 421
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=30.06 E-value=86 Score=25.34 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=20.4
Q ss_pred HHHcCCCCEEEEECh-------HHHHHHHHHhc
Q 022234 222 LKQALSIPVVAVASP-------SAVRSWVNLIS 247 (300)
Q Consensus 222 ~~~l~~~d~IvftS~-------s~v~~~~~~~~ 247 (300)
.+.+...|+++|.|| ..++++++.+.
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwls 94 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWAT 94 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHH
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhc
Confidence 344568999999996 57899998774
No 422
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=29.93 E-value=56 Score=26.53 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=45.0
Q ss_pred CCeEEEe----CCCCchHHHHHHHHhC---CCCEE-EeeeeEeeeCCC--------chhHHHhh-hcCCccEEEEeChH-
Q 022234 50 NPKVVVT----RERGKNGKLIKALAKH---RIDCL-ELPLIQHAQGPD--------TDRLSSVL-NDTIFDWIIITSPE- 111 (300)
Q Consensus 50 g~~Vlit----R~~~~~~~l~~~L~~~---G~~v~-~~P~i~~~~~~~--------~~~l~~~l-~~~~~d~ivFTS~~- 111 (300)
.++|++. |+...+..+++.+.+. |+++. .+.+..+ |.-+ .+.+.+.. .....|.|||.||.
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~idL~~l-P~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y 84 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTF-PHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEY 84 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCCGGGS-CCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCB
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEehhhc-CCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCcc
Confidence 4566654 3334456677666543 55555 4333221 1101 12233333 35789999999874
Q ss_pred ------HHHHHHHHHHHc---CCCCceEEEEc
Q 022234 112 ------AGSVFLEAWKEA---GTPNVRIGVVG 134 (300)
Q Consensus 112 ------av~~~~~~l~~~---~~~~~~i~aVG 134 (300)
..+.|++.+... .+.+.+++.++
T Consensus 85 ~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ 116 (199)
T 4hs4_A 85 NYSVPGVLKNAIDWLSRVSPQPLAGKPVALVT 116 (199)
T ss_dssp TTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEE
T ss_pred CCCcCHHHHHHHHHhcccCCcccCCCEEEEEE
Confidence 467777776542 23456655554
No 423
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=29.89 E-value=57 Score=28.39 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=48.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhh-cCCccEEEEeChH---H----HHHHHHHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN-DTIFDWIIITSPE---A----GSVFLEAW 120 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~-~~~~d~ivFTS~~---a----v~~~~~~l 120 (300)
.|.+|+++.+.-....+...++..|++++.+|+-. ....|.+.+.+.+. ..+...|++++++ + ++.+.+.+
T Consensus 94 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 172 (386)
T 2dr1_A 94 KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVA 172 (386)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHH
T ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHH
Confidence 47789999886433347778888999998888632 11135566766663 3467899998764 2 45555555
Q ss_pred HHc
Q 022234 121 KEA 123 (300)
Q Consensus 121 ~~~ 123 (300)
++.
T Consensus 173 ~~~ 175 (386)
T 2dr1_A 173 KEH 175 (386)
T ss_dssp HHT
T ss_pred HHc
Confidence 554
No 424
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=29.76 E-value=45 Score=29.56 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=28.9
Q ss_pred ccEEEEeC---------hHHHHHHHHHHHHcCCCCceEEEEccchHHHHHH-H
Q 022234 102 FDWIIITS---------PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE-V 144 (300)
Q Consensus 102 ~d~ivFTS---------~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~-~ 144 (300)
..+||||| .|-++...+.+.+ ..+..+++||.+....++. .
T Consensus 105 ~~~IvitSDrGLCG~fNsni~k~~~~~i~~--~~g~~l~~VG~Kg~~~~~~~~ 155 (311)
T 2xok_G 105 ELIVAITSDKGLCGSIHSQLAKAVRRHLND--QPNADIVTIGDKIKMQLLRTH 155 (311)
T ss_dssp EEEEEECCSCCSSTTHHHHHHHHHHHSSSS--CTTCEEEEESHHHHHHHHTTS
T ss_pred eEEEEEeCCCcccchhhHHHHHHHHHHHHh--cCCCEEEEechHHHHHHHHhc
Confidence 45999999 6667766544332 1222399999999999997 5
No 425
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=29.75 E-value=56 Score=27.14 Aligned_cols=35 Identities=9% Similarity=0.043 Sum_probs=27.5
Q ss_pred CCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 45 ~~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
..++.|++||||..... ...+++.|.+.|++|+.+
T Consensus 14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~ 49 (249)
T 1o5i_A 14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTIC 49 (249)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 37788999999988753 468999999999987654
No 426
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=29.67 E-value=41 Score=24.28 Aligned_cols=34 Identities=21% Similarity=0.117 Sum_probs=27.2
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCCEE
Q 022234 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (300)
Q Consensus 44 ~~~~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~ 77 (300)
.+.+|.|..|.++...+ ....+.+.++++|+.+.
T Consensus 12 ~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~ 46 (107)
T 3l3e_A 12 APKPLHKVVVCVSKKLSKKQSELNGIAASLGADYR 46 (107)
T ss_dssp --CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEE
T ss_pred ccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEe
Confidence 34889999999997654 56789999999999874
No 427
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=29.67 E-value=54 Score=27.56 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=49.6
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEE----EeChHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWII----ITSPEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~iv----FTS~~av~~~~~~l 120 (300)
-.+.|++||||..... ...+++.|.++|++|+.+---.. ...+.+.+.+.....+..+ +++..+++.+++.+
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 101 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNA---EVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTI 101 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 5678999999988753 46899999999998765321000 0011222222222222222 37788888888766
Q ss_pred HHc-CCCCceEEEEc
Q 022234 121 KEA-GTPNVRIGVVG 134 (300)
Q Consensus 121 ~~~-~~~~~~i~aVG 134 (300)
.+. +.-+.-|.+.|
T Consensus 102 ~~~~g~id~li~nAg 116 (271)
T 4iin_A 102 VQSDGGLSYLVNNAG 116 (271)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHhcCCCCEEEECCC
Confidence 543 22244444444
No 428
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=29.55 E-value=2e+02 Score=22.42 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=62.0
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeeeCCCCc--HHHHHHc--CCCC--EEEEEChHHHHHHHHHhcccCCCCce-EEEeCH
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQA--LSIP--VVAVASPSAVRSWVNLISDTEQWSNS-VACIGE 261 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~l--~~~d--~IvftS~s~v~~~~~~~~~~~~~~~~-vv~IG~ 261 (300)
.+.|.+.|++.|++|..+-+|.....+.+. ..+.+.. +..| +++.-|.-.+-.-..-+ +.++ ..|..+
T Consensus 15 K~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaANKv-----~GIRAAl~~d~ 89 (149)
T 3he8_A 15 KREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGISIAANKV-----PGIRAAVCTNS 89 (149)
T ss_dssp HHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHHTS-----TTCCEEECSSH
T ss_pred HHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHhhcC-----CCeEEEEeCCH
Confidence 456777889999999888888755433211 1122222 3455 55566665554333322 3444 457789
Q ss_pred HHHHHHHHcC-CCeEEecCCCCHHHHHHHHHHHH
Q 022234 262 TTASAAKRLG-LKNVYYPTHPGLEGWVDSILEAL 294 (300)
Q Consensus 262 ~Ta~~l~~~G-~~~~~v~~~p~~~~l~~ai~~~~ 294 (300)
.+|+..++.. -++.....+..-..++..|.+.+
T Consensus 90 ~sA~~ar~hNnaNVl~lG~rvig~~~A~~iv~~f 123 (149)
T 3he8_A 90 YMARMSREHNDANILALGERVVGLDLALDIVDTW 123 (149)
T ss_dssp HHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHH
Confidence 9999999974 45556777776667776666444
No 429
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=29.41 E-value=1.1e+02 Score=26.85 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=23.2
Q ss_pred ccccCCCCCC---CeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 41 ATSASASNSN---PKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 41 ~~~~~~~l~g---~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
++-.-+.+.| ++||||...+. ...+++.|.+.|++|+.+
T Consensus 12 ~~~~~~~~~~~M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 54 (375)
T 1t2a_A 12 SGRENKYFQGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGI 54 (375)
T ss_dssp ------------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccchhhHhhcCcEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 3444455555 57999987653 468889999999988764
No 430
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=29.33 E-value=53 Score=27.49 Aligned_cols=82 Identities=20% Similarity=0.117 Sum_probs=44.3
Q ss_pred ccccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEE--EeChHHHHHHH
Q 022234 41 ATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWII--ITSPEAGSVFL 117 (300)
Q Consensus 41 ~~~~~~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~iv--FTS~~av~~~~ 117 (300)
++.....+.|++||||..... ...+++.|.+.|++|+.+-- ..+..+ ...++. +++..+++.++
T Consensus 12 ~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~---------~~~~~~~Dl~d~~~v~~~~ 78 (253)
T 2nm0_A 12 SGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYR----SGEPPE---------GFLAVKCDITDTEQVEQAY 78 (253)
T ss_dssp --------CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----SSCCCT---------TSEEEECCTTSHHHHHHHH
T ss_pred CCCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC----ChHhhc---------cceEEEecCCCHHHHHHHH
Confidence 344557788999999988753 46899999999998765421 111101 111111 36777887777
Q ss_pred HHHHHc-CCCCceEEEEcc
Q 022234 118 EAWKEA-GTPNVRIGVVGA 135 (300)
Q Consensus 118 ~~l~~~-~~~~~~i~aVG~ 135 (300)
+.+.+. +.-+.-|.+.|.
T Consensus 79 ~~~~~~~g~iD~lv~nAg~ 97 (253)
T 2nm0_A 79 KEIEETHGPVEVLIANAGV 97 (253)
T ss_dssp HHHHHHTCSCSEEEEECSC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 765443 323455555554
No 431
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=29.24 E-value=81 Score=27.37 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=39.6
Q ss_pred CCC-CCCeEEEeCCCCchHHHH-HHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHH
Q 022234 46 ASN-SNPKVVVTRERGKNGKLI-KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAG 113 (300)
Q Consensus 46 ~~l-~g~~VlitR~~~~~~~l~-~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av 113 (300)
.+| .|++|.++........+. ..|++.|+.+..+ ++...+ ..+....+..+..|+++...+...
T Consensus 149 ~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv---~~~~~~-~~~~~~al~~G~vDa~~~~~p~~~ 214 (341)
T 3un6_A 149 NNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHF---SYHEMS-PAEMPAALSEHRITGYSVAEPFGA 214 (341)
T ss_dssp CSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSE---EEEECC-GGGHHHHHHTTSCSEEEEETTHHH
T ss_pred HHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHe---EEEEcC-hHHHHHHHHcCCCCEEEecCCHHH
Confidence 568 999999998765444444 4889999864322 222222 222334445678888887776543
No 432
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=29.19 E-value=1.1e+02 Score=28.21 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=29.3
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCCEEE
Q 022234 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLE 78 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~~~~l~~~L~~~G~~v~~ 78 (300)
..+.||+|++.-.....-.+++.|++.|++++.
T Consensus 313 ~~l~GKrv~i~g~~~~~~~la~~L~elGm~vv~ 345 (460)
T 2xdq_A 313 ELVRGKSVFFMGDNLLEISLARFLIRCGMRVLE 345 (460)
T ss_dssp HHHTTCEEEECCCSSCHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCEEEEECCchHHHHHHHHHHHCCCEEEE
Confidence 347899999998777888999999999999988
No 433
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=29.11 E-value=3.1e+02 Score=25.26 Aligned_cols=220 Identities=12% Similarity=0.056 Sum_probs=104.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeee--------------eEeeeC-CCchhHHHhhhcCCccEEEE-eChHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPL--------------IQHAQG-PDTDRLSSVLNDTIFDWIII-TSPEA 112 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~--------------i~~~~~-~~~~~l~~~l~~~~~d~ivF-TS~~a 112 (300)
+.|+|+|.....-...+++.|.+.|.++..+-- ..+..- .+.+.+.++ ...+.|.+|- |+.-.
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~A-gi~~ad~~ia~t~~De 80 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEA-GAQDADMLVAVTNTDE 80 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHH-TTTTCSEEEECCSCHH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhc-CCCcCCEEEEEcCChH
Confidence 368888888877677888888888877765421 011110 122222222 3567888876 44545
Q ss_pred HHHHHHHHHHcCCCCceEEEEccchHH--HHHHHhhccCCCccccccCCCCcHHHHHHhcccCC-------CCCC-EEEE
Q 022234 113 GSVFLEAWKEAGTPNVRIGVVGAGTAS--IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG-------KKKC-TVLY 182 (300)
Q Consensus 113 v~~~~~~l~~~~~~~~~i~aVG~~Ta~--~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~-------~~~~-~vL~ 182 (300)
+..+.-.+.+.-....++++.=..... ..+..+..+.-|+...+.|+...++.+.+.+..-. ..|+ .++-
T Consensus 81 ~Nl~~~~~Ak~~~~~~~~iar~~~~~~~~~~~~l~~~~~~giD~iIsPe~~~a~~I~~~i~~p~~~~~~~f~~g~~~l~e 160 (461)
T 4g65_A 81 TNMAACQVAFTLFNTPNRIARIRSPQYLAQKEALFKSGAIPVDHLIAPEELVTSYIERLIQYPGALQVVSFAEEKVSLVA 160 (461)
T ss_dssp HHHHHHHHHHHHHCCSSEEEECCCHHHHTTHHHHTTTSSSCCSEEECHHHHHHHHHHHHHTSTTCSEEEEETTTTEEEEE
T ss_pred HHHHHHHHHHHhcCCccceeEeccchhhhhhhhhhhcccCCcceeecHHHHHHHHHHHhccCCCeEEEEEeccceEEEEE
Confidence 554444443321123444444332211 11111111112666555666556666666553211 1122 2222
Q ss_pred EcCCCC----hhHHHHHHHhC--CCeeEEEEeeeeeeCCC-CcHHHHHHcCCCC-EEEEEChHHHHHHHHHhcccCCCCc
Q 022234 183 PASAKA----SNEIEEGLSNR--GFEVVRLNTYTTEPVHH-VDQTVLKQALSIP-VVAVASPSAVRSWVNLISDTEQWSN 254 (300)
Q Consensus 183 ~rg~~~----~~~L~~~L~~~--G~~v~~~~vY~~~~~~~-~~~~~~~~l~~~d-~IvftS~s~v~~~~~~~~~~~~~~~ 254 (300)
++-..+ ...+.+ |... ...+.-+.+|+....-. ..+. .+..-| +.+++++..++.+++.++.......
T Consensus 161 ~~v~~~s~l~g~~l~~-l~~~~p~~~~~I~aI~R~g~~iiP~g~t---~i~~gD~v~~i~~~~~i~~~~~~~g~~~~~~~ 236 (461)
T 4g65_A 161 VKAYYGGPLVGNALSA-LREHMPHIDTRVAAIFRQGRPIRPQGTT---IIEADDEVFFVAASNHIRSVMSELQRLEKPYR 236 (461)
T ss_dssp EECCTTSSSTTCBHHH-HHHTSTTSCEEEEEEEETTEEECCCTTC---BCCTTCEEEEEEETTTHHHHHHHTTGGGSCCC
T ss_pred EEecCCCeecCCcHHH-HHhhCCCCceEEEEEEECCeeccCCCCc---eecCCCEEEEEeccchHHHHHHhhcccccccc
Confidence 222111 122222 3322 13455566666532111 1111 134445 5667888899999998876532223
Q ss_pred eEEE-----eCHHHHHHHHHcCCCe
Q 022234 255 SVAC-----IGETTASAAKRLGLKN 274 (300)
Q Consensus 255 ~vv~-----IG~~Ta~~l~~~G~~~ 274 (300)
+++. ||-.+|+.+++ ++++
T Consensus 237 ~v~I~GgG~ig~~lA~~L~~-~~~v 260 (461)
T 4g65_A 237 RIMIVGGGNIGASLAKRLEQ-TYSV 260 (461)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEE
T ss_pred EEEEEcchHHHHHHHHHhhh-cCce
Confidence 3433 34556666644 4554
No 434
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=29.09 E-value=44 Score=29.19 Aligned_cols=62 Identities=3% Similarity=-0.108 Sum_probs=40.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE 111 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~ 111 (300)
.|.+|++..+..-...+...++..|+++..+|+-.-. ..|.+.+.+.+...+...|++++++
T Consensus 97 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~~~l~~~i~~~~~~~v~~~~~~ 158 (393)
T 3kgw_A 97 PGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGE-HYTLQEVEEGLAQHKPVLLFLVHGE 158 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTC-CCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred CCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCC-CCCHHHHHHHHhhCCCcEEEEeccC
Confidence 5778888865533234567778889999988863211 2255666666643367888888874
No 435
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=29.08 E-value=84 Score=24.85 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=24.3
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCee
Q 022234 163 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 203 (300)
Q Consensus 163 ~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v 203 (300)
.+.|.+.|......++-++|.......+.+.+.|+..|+.+
T Consensus 33 ~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~ 73 (185)
T 2jgn_A 33 RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYAC 73 (185)
T ss_dssp HHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCce
Confidence 34555555543323344555555556778888888888665
No 436
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=28.91 E-value=39 Score=26.85 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=32.6
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh----hcCCccEEEEeChHHH
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL----NDTIFDWIIITSPEAG 113 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l----~~~~~d~ivFTS~~av 113 (300)
..-+++.|++.|+++..... .+ ++.+.+.+.+ ....+|.||.|-..++
T Consensus 42 g~~L~~~L~~~G~~v~~~~i---V~-Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 42 GDIIKQLLIENGHKIIGYSL---VP-DDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEE---EC-SCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEE---eC-CCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 35789999999999876543 22 3445555544 2467899998876554
No 437
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=28.91 E-value=45 Score=29.32 Aligned_cols=62 Identities=8% Similarity=0.015 Sum_probs=40.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE 111 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~ 111 (300)
.|.+|+++.+.-....+...++..|+++..+|+-. ....|.+.+.+.+...+...|++++++
T Consensus 93 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~ 154 (393)
T 2huf_A 93 DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV-GQSLSLDEIRDALLIHKPSVLFLTQGD 154 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC-CCCCCHHHHHHHHhccCCcEEEEEccC
Confidence 57789999876433345556677899999888632 111245666665532256788888765
No 438
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=28.63 E-value=44 Score=29.42 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=40.9
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE 111 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~ 111 (300)
.|.+|++..+.-....+...++..|++++.+|+-. ....|.+.+.+.+...+...|++++++
T Consensus 108 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~ 169 (393)
T 1vjo_A 108 PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-GEVFSLEELRTALETHRPAILALVHAE 169 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred CCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-CCCCCHHHHHHHHhhCCceEEEEeccC
Confidence 47789999876433347777888999998888632 112355666666532156788888774
No 439
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=28.60 E-value=1.8e+02 Score=24.82 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=38.8
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhC-C-CCEEEeeeeE------------eee-CCCc---hhHHHhhhcCCccEEEEeC
Q 022234 48 NSNPKVVVTRERGKNGKLIKALAKH-R-IDCLELPLIQ------------HAQ-GPDT---DRLSSVLNDTIFDWIIITS 109 (300)
Q Consensus 48 l~g~~VlitR~~~~~~~l~~~L~~~-G-~~v~~~P~i~------------~~~-~~~~---~~l~~~l~~~~~d~ivFTS 109 (300)
+..++|||+..... ..+++.|++. | +.++.++.-. ..+ ..+. +.+.+.......|.|+.++
T Consensus 2 m~~~~Ili~g~g~~-~~l~~~l~~~~~~~~v~~~d~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~d~vi~~~ 80 (331)
T 2pn1_A 2 MQKPHLLITSAGRR-AKLVEYFVKEFKTGRVSTADCSPLASALYMADQHYIVPKIDEVEYIDHLLTLCQDEGVTALLTLI 80 (331)
T ss_dssp TTCCEEEEESCTTC-HHHHHHHHHHCCSSEEEEEESCTTCGGGGGSSSEEECCCTTSTTHHHHHHHHHHHHTCCEEEESS
T ss_pred CccceEEEecCCch-HHHHHHHHHhcCCCEEEEEeCCCcchhHHhhhceecCCCCCChhHHHHHHHHHHHcCCCEEEeCC
Confidence 45689999965543 5788888876 6 7777654210 112 1121 1222222335789988877
Q ss_pred hHHHHHH
Q 022234 110 PEAGSVF 116 (300)
Q Consensus 110 ~~av~~~ 116 (300)
-..+..+
T Consensus 81 ~~~~~~~ 87 (331)
T 2pn1_A 81 DPELGLL 87 (331)
T ss_dssp HHHHHHH
T ss_pred chhHHHH
Confidence 6555433
No 440
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=28.55 E-value=56 Score=27.24 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=49.7
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEE----EeChHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWII----ITSPEAGSVFLEAW 120 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~iv----FTS~~av~~~~~~l 120 (300)
..+.||++|||..... ...+++.|.++|++|+.+-. .....+++...+.....+..+ +++..+++.+++.+
T Consensus 2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 77 (257)
T 3imf_A 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGR----TKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQI 77 (257)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 5688999999988653 46899999999998765321 000112222222111122222 36788888888776
Q ss_pred HHc-CCCCceEEEEc
Q 022234 121 KEA-GTPNVRIGVVG 134 (300)
Q Consensus 121 ~~~-~~~~~~i~aVG 134 (300)
.+. +.-+.-|.+.|
T Consensus 78 ~~~~g~id~lv~nAg 92 (257)
T 3imf_A 78 DEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 543 32344555555
No 441
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=28.46 E-value=65 Score=27.18 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=40.5
Q ss_pred CCCCEEEEEChHHHHHHHHHhcccC---CCCceEEEeCHHHHHHHHHcCCCeE
Q 022234 226 LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNV 275 (300)
Q Consensus 226 ~~~d~IvftS~s~v~~~~~~~~~~~---~~~~~vv~IG~~Ta~~l~~~G~~~~ 275 (300)
.+-.+|=+-|.|++.+|.+.+.+.. ..++..+..+..|++.++++|+...
T Consensus 20 ~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l~i~~V~tS~~t~~~a~~~Gi~l~ 72 (228)
T 4gmk_A 20 KDGMIVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTTSIRTAEQAKSLGIVIK 72 (228)
T ss_dssp CTTCEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHTTCCBC
T ss_pred CCCCEEEECchHHHHHHHHHHHHHHhhcCCcEEEEeCcHHHHHHHHHcCCcee
Confidence 4556889999999999999876531 1367888999999999999999753
No 442
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=28.44 E-value=91 Score=26.79 Aligned_cols=61 Identities=8% Similarity=0.109 Sum_probs=42.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhc-CCccEEEEeChHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLND-TIFDWIIITSPEA 112 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~-~~~d~ivFTS~~a 112 (300)
.|.+|++..+.- ..+...++..|+++..+|+-.- ...|.+.+.+.+.. .+...|++++++.
T Consensus 91 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~v~l~~p~n 152 (354)
T 3ly1_A 91 LEAQLVIPELTY--GDGEHFAKIAGMKVTKVKMLDN-WAFDIEGLKAAVAAYSGPSIVYLVNPNN 152 (354)
T ss_dssp TTCEEEEESSSC--THHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHHHTCSSCEEEEEESSCT
T ss_pred CCCeEEECCCCc--hHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHHHhccCCCCCEEEEeCCCC
Confidence 477899998864 3466778889999999887421 12255667666643 5678888877653
No 443
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=28.27 E-value=60 Score=27.82 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=51.3
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEE--EeChHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWII--ITSPEAGSVFLEA 119 (300)
Q Consensus 46 ~~l~g~~VlitR~~---~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~iv--FTS~~av~~~~~~ 119 (300)
..+.|+++|||... .=...+++.|.+.|++|+.+-.- . ...+.+.... ..+...++. +|+..+++.+++.
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~--~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLS--E--TFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS--G--GGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHH
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCC--h--HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Confidence 45789999999876 44578999999999997654221 0 0112222222 122222222 3788899988887
Q ss_pred HHHc-CCCCceEEEEcc
Q 022234 120 WKEA-GTPNVRIGVVGA 135 (300)
Q Consensus 120 l~~~-~~~~~~i~aVG~ 135 (300)
+.+. +.-+.-|.+.|-
T Consensus 102 ~~~~~g~iD~lVnnAG~ 118 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAF 118 (296)
T ss_dssp HHHHHSCCSEEEECCCC
T ss_pred HHHHcCCCCEEEECCCc
Confidence 7553 333455555553
No 444
>4ggi_A UDP-2,3-diacylglucosamine pyrophosphatase LPXI; structural genomics, PSI-biology; HET: UDG; 2.52A {Caulobacter crescentus} PDB: 4ggm_X*
Probab=28.16 E-value=88 Score=27.06 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=32.7
Q ss_pred CceEEEeCHHHHHHHHHcCCCeE-EecCCC---CHHHHHHHHHHH
Q 022234 253 SNSVACIGETTASAAKRLGLKNV-YYPTHP---GLEGWVDSILEA 293 (300)
Q Consensus 253 ~~~vv~IG~~Ta~~l~~~G~~~~-~v~~~p---~~~~l~~ai~~~ 293 (300)
..++=+||+.|-+.+.++|++.+ +.|... +.+.++++..++
T Consensus 226 ~fd~P~iG~dti~~~~~ag~~~ivi~~g~si~~~~~~~i~~a~~~ 270 (283)
T 4ggi_A 226 RVALPTIGVATIHRAARAGLAGIVGEAGRLLVVDREAVIAAADDL 270 (283)
T ss_dssp CCCCCEECHHHHHHHHHTTCCEEEEETTBCEETTHHHHHHHHHHH
T ss_pred ccCCccccHHHHHHHHHcCCeEEEEcCCCcEEeCHHHHHHHHHHc
Confidence 34555899999999999999975 577765 678888887764
No 445
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=28.14 E-value=2e+02 Score=21.99 Aligned_cols=112 Identities=16% Similarity=0.240 Sum_probs=62.1
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe----ChHHHHHHHHHHH
Q 022234 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT----SPEAGSVFLEAWK 121 (300)
Q Consensus 47 ~l~g~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT----S~~av~~~~~~l~ 121 (300)
++.+++||+.-... ....+...|++.|+.+... .+..+..+.+....+|.|+.- ..++.+.+. .++
T Consensus 4 ~m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~-~l~ 74 (184)
T 3rqi_A 4 SMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQA--------HNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIA-PLC 74 (184)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHHTTSCCSEEEECSEETTEESHHHHH-HHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHH-HHH
Confidence 45678999987764 3567888899888754321 232333334445678888763 334555443 344
Q ss_pred HcCCCCceEEEE-ccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 122 EAGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 122 ~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
+.. .+.+++++ |........+.+.. |.. +++....+.+.|...+..
T Consensus 75 ~~~-~~~~ii~lt~~~~~~~~~~a~~~---Ga~-~~l~KP~~~~~L~~~i~~ 121 (184)
T 3rqi_A 75 DLQ-PDARILVLTGYASIATAVQAVKD---GAD-NYLAKPANVESILAALQT 121 (184)
T ss_dssp HHC-TTCEEEEEESSCCHHHHHHHHHH---TCS-EEEESSCCHHHHHHHTST
T ss_pred hcC-CCCCEEEEeCCCCHHHHHHHHHh---CHH-HheeCCCCHHHHHHHHHH
Confidence 433 35666655 43333333222211 544 355566788888887754
No 446
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=28.12 E-value=76 Score=26.70 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=4.8
Q ss_pred CCCEEEEEC
Q 022234 227 SIPVVAVAS 235 (300)
Q Consensus 227 ~~d~IvftS 235 (300)
++|+|++.+
T Consensus 65 ~vdGiIi~~ 73 (294)
T 3qk7_A 65 RVDALIVAH 73 (294)
T ss_dssp CCSEEEECS
T ss_pred CCCEEEEeC
Confidence 555555544
No 447
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=28.08 E-value=45 Score=28.11 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=38.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeee--------eEeee--CCCchhHHHhhhcCCccEEEEeChH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPL--------IQHAQ--GPDTDRLSSVLNDTIFDWIIITSPE 111 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~--------i~~~~--~~~~~~l~~~l~~~~~d~ivFTS~~ 111 (300)
.+|+||||...--...+++.|.+.|++|..+-- ++... ..+.+.+.+.+. +.+|.||.+...
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~~d~vih~a~~ 73 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVH-LRPEILVYCVAA 73 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGG-GCCSEEEECHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhc-CCCCEEEEeCCC
Confidence 478999998422357899999999999887632 11111 123333333332 358999987643
No 448
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=28.04 E-value=50 Score=27.76 Aligned_cols=82 Identities=9% Similarity=0.007 Sum_probs=45.9
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEE--EEeChHHHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWI--IITSPEAGSVFLEAWKE 122 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~i--vFTS~~av~~~~~~l~~ 122 (300)
-.+.||+||||..... ...+++.|.+.|++|+.+-. .. +...+.+......++ =+++..+++.+++.+.+
T Consensus 23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r------~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (260)
T 3gem_A 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYR------TE-HASVTELRQAGAVALYGDFSCETGIMAFIDLLKT 95 (260)
T ss_dssp ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEES------SC-CHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC------Ch-HHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHH
Confidence 5588999999988653 46899999999999875432 11 111122211112222 14678888888887655
Q ss_pred c-CCCCceEEEEc
Q 022234 123 A-GTPNVRIGVVG 134 (300)
Q Consensus 123 ~-~~~~~~i~aVG 134 (300)
. +.-+.-|.+.|
T Consensus 96 ~~g~iD~lv~nAg 108 (260)
T 3gem_A 96 QTSSLRAVVHNAS 108 (260)
T ss_dssp HCSCCSEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 4 22244444444
No 449
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=27.93 E-value=48 Score=28.83 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=41.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE 111 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~ 111 (300)
.|.+|+++.+.-....+...++..|+++..+|+-.- ...|.+.+.+.+...+...|++++++
T Consensus 76 ~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~ 137 (384)
T 3zrp_A 76 PNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPG-DYVKPGEVEEEVRKSEYKLVALTHVE 137 (384)
T ss_dssp TTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTT-CCCCHHHHHHHHHHSCEEEEEEESEE
T ss_pred CCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCC-CCCCHHHHHHHHHhCCCcEEEEeCCC
Confidence 467899988754334466666788999999886431 11255667666644357888888773
No 450
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=27.92 E-value=75 Score=28.30 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeCh-------HHHHHHHHHHHHcCC---CCceEEE
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSP-------EAGSVFLEAWKEAGT---PNVRIGV 132 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~-------~av~~~~~~l~~~~~---~~~~i~a 132 (300)
+.+++.+.+.|+++..+.+- .. +...+.. .+..+|.|||-|| ..++.|++.+..... .+.++++
T Consensus 275 ~~i~~~l~~~g~~v~~~~~~---~~-~~~~~~~--~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~ 348 (404)
T 2ohh_A 275 HAIAEGAMSEGVDVRVYCLH---ED-DRSEIVK--DILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALV 348 (404)
T ss_dssp HHHHHHHHTTTCEEEEEETT---TS-CHHHHHH--HHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEE
T ss_pred HHHHHHHHhCCCeEEEEECC---CC-CHHHHHH--HHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEE
Confidence 34455566667766544331 11 1222211 3468999999998 478888887765433 5666666
Q ss_pred Ec
Q 022234 133 VG 134 (300)
Q Consensus 133 VG 134 (300)
+|
T Consensus 349 ~~ 350 (404)
T 2ohh_A 349 FG 350 (404)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 451
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=27.88 E-value=2.5e+02 Score=23.01 Aligned_cols=109 Identities=11% Similarity=0.083 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEE----ChHHHHHHHHHhcc
Q 022234 176 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA----SPSAVRSWVNLISD 248 (300)
Q Consensus 176 ~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivft----S~s~v~~~~~~~~~ 248 (300)
.+.+||++-.+.. +..+.+.|+..|+.|. .+. ...+.++.+ ..+|.|+.= .-.+.+ +...+..
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~---~a~------~~~eal~~l~~~~~dlvl~D~~mp~~~G~~-l~~~ir~ 197 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCK---TAN------DGVDALNVLSKNHIDIVLSDVNMPNMDGYR-LTQRIRQ 197 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEE---EEC------CSHHHHHHHHHSCCSEEEEEESSCSSCCHH-HHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEE---EEC------CHHHHHHHHHhCCCCEEEEcCCCCCCCHHH-HHHHHHh
Confidence 3468999877764 6678888988887542 111 112223222 468877753 112222 2233322
Q ss_pred cCCCCceEEEeCH----HHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHc
Q 022234 249 TEQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 249 ~~~~~~~vv~IG~----~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
.. .+++++.++. .....+.+.|..- ++....+.+.|.+.|..++..
T Consensus 198 ~~-~~~piI~lt~~~~~~~~~~~~~~G~~~-~l~KP~~~~~L~~~l~~~~~~ 247 (254)
T 2ayx_A 198 LG-LTLPVIGVTANALAEEKQRCLESGMDS-CLSKPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp HH-CCSCEEEEESSTTSHHHHHHHHCCCEE-EEESSCCHHHHHHHHHHHHHH
T ss_pred cC-CCCcEEEEECCCCHHHHHHHHHcCCce-EEECCCCHHHHHHHHHHHHHH
Confidence 21 2566666532 4556667789864 667777999999999887754
No 452
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=27.88 E-value=60 Score=27.41 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=28.4
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
.++.||+||||..... ...+++.|.+.|++|+.+
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~ 44 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSV 44 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 6788999999988653 468999999999998754
No 453
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.83 E-value=1.6e+02 Score=20.56 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=49.6
Q ss_pred CCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHH------HHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHHccC
Q 022234 227 SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET------TASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 298 (300)
Q Consensus 227 ~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~------Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~~~~ 298 (300)
+--+-.-||+..++..++.+++.+ ..+.+++-|.. --+.+++.|+..++ -...+++.|-+.+.++++..+
T Consensus 28 gryirtatssqdirdiiksmkdng-kplvvfvngasqndvnefqneakkegvsydv-lkstdpeeltqrvreflktag 103 (112)
T 2lnd_A 28 GRYIRTATSSQDIRDIIKSMKDNG-KPLVVFVNGASQNDVNEFQNEAKKEGVSYDV-LKSTDPEELTQRVREFLKTAG 103 (112)
T ss_dssp TTTEEEECSHHHHHHHHHHHTTCC-SCEEEEECSCCHHHHHHHHHHHHHHTCEEEE-EECCCHHHHHHHHHHHHHHTT
T ss_pred CceeeeccchhhHHHHHHHHHhcC-CeEEEEecCcccccHHHHHHHHHhcCcchhh-hccCCHHHHHHHHHHHHHhcc
Confidence 334677889999998888887653 23455555532 23456778998764 455699999999999998765
No 454
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=27.78 E-value=1e+02 Score=26.81 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=37.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE 111 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~ 111 (300)
.|.+|++..|.- ..+...++..|++++.+| .|.+.+.+.+. .+...|++++++
T Consensus 112 ~gd~vl~~~p~~--~~~~~~~~~~g~~~~~v~-------~d~~~l~~~l~-~~~~~v~~~~p~ 164 (370)
T 2z61_A 112 DGDEVLIQNPCY--PCYKNFIRFLGAKPVFCD-------FTVESLEEALS-DKTKAIIINSPS 164 (370)
T ss_dssp TTCEEEEESSCC--THHHHHHHHTTCEEEEEC-------SSHHHHHHHCC-SSEEEEEEESSC
T ss_pred CCCEEEEeCCCc--hhHHHHHHHcCCEEEEeC-------CCHHHHHHhcc-cCceEEEEcCCC
Confidence 477899998875 345566778899998888 35566666653 356788888665
No 455
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=27.78 E-value=1.8e+02 Score=25.57 Aligned_cols=160 Identities=12% Similarity=0.098 Sum_probs=84.2
Q ss_pred EEEeCCCCchHHH----HHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh----hcCCccEEEEeChHH------HHHHHH
Q 022234 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL----NDTIFDWIIITSPEA------GSVFLE 118 (300)
Q Consensus 53 VlitR~~~~~~~l----~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l----~~~~~d~ivFTS~~a------v~~~~~ 118 (300)
|+.....+.+..+ .+.+++.|++...+-+=+ ....+++.+.+ .+...|.|+.--|-- -+...+
T Consensus 40 vilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~---~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~ 116 (301)
T 1a4i_A 40 ILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPR---TTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVIN 116 (301)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT---TCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHH
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC---CCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHh
Confidence 4444444433333 344677798876654311 11123444333 367889998865431 222222
Q ss_pred HHH-HcCCCCceEEEEccchHHHHHHHhhccCCCc-cccccCCCCcHHHHHHhcccCC--CCCCEEEEEcCC-CChhHHH
Q 022234 119 AWK-EAGTPNVRIGVVGAGTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYPASA-KASNEIE 193 (300)
Q Consensus 119 ~l~-~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~-~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~rg~-~~~~~L~ 193 (300)
... +...|+..-+-+| .|- . |- ...+.|- |++++++.|.... ..|++++++... .....+.
T Consensus 117 ~I~p~KDVDG~hp~N~G-----~l~-~------g~~~~~~~Pc--Tp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A 182 (301)
T 1a4i_A 117 AIAPEKDVDGLTSINAG-----RLA-R------GDLNDCFIPC--TPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMH 182 (301)
T ss_dssp TSCGGGBTTCCSHHHHH-----HHH-T------TCCSSCCCCH--HHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHH
T ss_pred ccCCCCCccCCChhhHH-----HHh-c------CCCCCCccCc--hHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHH
Confidence 221 1112333222222 111 1 31 1234443 6778887776654 368899998666 3455678
Q ss_pred HHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEChH
Q 022234 194 EGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 237 (300)
Q Consensus 194 ~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS~s 237 (300)
..|...|++|+-+.-. .. ++.+.+...|+|+-+.+.
T Consensus 183 ~lL~~~gAtVtv~hs~-----t~---~L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 183 DLLLWNNATVTTCHSK-----TA---HLDEEVNKGDILVVATGQ 218 (301)
T ss_dssp HHHHHTTCEEEEECTT-----CS---SHHHHHTTCSEEEECCCC
T ss_pred HHHHhCCCeEEEEECC-----cc---cHHHHhccCCEEEECCCC
Confidence 8889999888655311 11 233345688988877665
No 456
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=27.75 E-value=92 Score=23.65 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=48.7
Q ss_pred CEEEEEcCC----CChhHHHHHHHhCCCeeEEEEeeeeeeC--CCCcH-----HHHHHc-CCCCE-EEEEChHHHHHHHH
Q 022234 178 CTVLYPASA----KASNEIEEGLSNRGFEVVRLNTYTTEPV--HHVDQ-----TVLKQA-LSIPV-VAVASPSAVRSWVN 244 (300)
Q Consensus 178 ~~vL~~rg~----~~~~~L~~~L~~~G~~v~~~~vY~~~~~--~~~~~-----~~~~~l-~~~d~-IvftS~s~v~~~~~ 244 (300)
++|.+++.. .-...+...|.+.|++ +|-..+. ..... ..+.++ ..+|. ++++.+..+...++
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~-----v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~~~~~~v~~ 88 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR-----VLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPPSALMDHLP 88 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE-----EEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCHHHHTTTHH
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE-----EEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCHHHHHHHHH
Confidence 688888763 2233556668888975 4444332 11100 012223 36785 55666666666665
Q ss_pred HhcccCCCCceEEE---eCHHHHHHHHHcCCCe
Q 022234 245 LISDTEQWSNSVAC---IGETTASAAKRLGLKN 274 (300)
Q Consensus 245 ~~~~~~~~~~~vv~---IG~~Ta~~l~~~G~~~ 274 (300)
.+.+.+.. ..++. .-...++.+++.|++.
T Consensus 89 ~~~~~gi~-~i~~~~g~~~~~~~~~a~~~Gir~ 120 (140)
T 1iuk_A 89 EVLALRPG-LVWLQSGIRHPEFEKALKEAGIPV 120 (140)
T ss_dssp HHHHHCCS-CEEECTTCCCHHHHHHHHHTTCCE
T ss_pred HHHHcCCC-EEEEcCCcCHHHHHHHHHHcCCEE
Confidence 54443221 11111 1367788888899975
No 457
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=27.71 E-value=75 Score=27.19 Aligned_cols=86 Identities=8% Similarity=-0.011 Sum_probs=50.3
Q ss_pred CCCCCCeEEEeCCCC---chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEE--EeChHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWII--ITSPEAGSVFLEA 119 (300)
Q Consensus 46 ~~l~g~~VlitR~~~---~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~iv--FTS~~av~~~~~~ 119 (300)
..+.||++|||.... =...+++.|.+.|+.|+..-. ... ..+.+.+.. ..+...++. +++..+++.+++.
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r--~~~--~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 102 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQ--GDA--LKKRVEPLAEELGAFVAGHCDVADAASIDAVFET 102 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEEC--SHH--HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcC--CHH--HHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHH
Confidence 458899999998753 357899999999998765421 110 011122221 122222221 3788899988887
Q ss_pred HHHc-CCCCceEEEEcc
Q 022234 120 WKEA-GTPNVRIGVVGA 135 (300)
Q Consensus 120 l~~~-~~~~~~i~aVG~ 135 (300)
+.+. +.-+.-|.+.|-
T Consensus 103 ~~~~~g~iD~lVnnAG~ 119 (293)
T 3grk_A 103 LEKKWGKLDFLVHAIGF 119 (293)
T ss_dssp HHHHTSCCSEEEECCCC
T ss_pred HHHhcCCCCEEEECCcc
Confidence 7654 323455555553
No 458
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=27.66 E-value=3.3e+02 Score=24.32 Aligned_cols=74 Identities=18% Similarity=0.093 Sum_probs=47.2
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeee----eCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHHhcccCCCCceEEEeCHHHH
Q 022234 189 SNEIEEGLSNRGFEVVRLNTYTTE----PVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTA 264 (300)
Q Consensus 189 ~~~L~~~L~~~G~~v~~~~vY~~~----~~~~~~~~~~~~l~~~d~IvftS~s~v~~~~~~~~~~~~~~~~vv~IG~~Ta 264 (300)
.+.|.+.|+++|+++..+...-=. |.+ +++.+ -.-..-...-|..+++.+-+.-. .+-+|+|+|-++.
T Consensus 190 t~~Ll~~L~~kGv~~a~vTLHVG~GTF~PV~---e~i~~-H~MHsE~~~V~~~ta~~in~aka----~G~RViAVGTTsv 261 (345)
T 1wdi_A 190 TPELLERLREMGVELRFLTLHVGPGTFRPVK---GDPEK-HEMHAEPYAIPEEVAEAVNRAKA----EGRRVVAVGTTVV 261 (345)
T ss_dssp CHHHHHHHHHTTCEEEEEEEEESGGGCCC-------------CCCEEEEECHHHHHHHHHHHH----TTCCEEEESHHHH
T ss_pred CHHHHHHHHHCCCeEEEEEEeecCCCCcccc---cchhc-CCccceEEEECHHHHHHHHHHHH----cCCeEEEEecchH
Confidence 678999999999998887765321 222 11211 11222345567788887655432 2569999999999
Q ss_pred HHHHHc
Q 022234 265 SAAKRL 270 (300)
Q Consensus 265 ~~l~~~ 270 (300)
++++..
T Consensus 262 R~LEsa 267 (345)
T 1wdi_A 262 RALESA 267 (345)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999983
No 459
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=27.64 E-value=65 Score=26.25 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
.++.|++||||..... ...+++.|.+.|++|+.+
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~ 37 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAV 37 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 3577999999988653 468999999999987654
No 460
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=27.61 E-value=1.8e+02 Score=25.21 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=10.0
Q ss_pred eEEEeCHHHHHHHHHc
Q 022234 255 SVACIGETTASAAKRL 270 (300)
Q Consensus 255 ~vv~IG~~Ta~~l~~~ 270 (300)
-+++..+...+.++..
T Consensus 215 G~~~~~~~~~~~~~~~ 230 (393)
T 2huf_A 215 TPVSFSHRAVERYKRR 230 (393)
T ss_dssp EEEEECHHHHHHHHTC
T ss_pred EEEEECHHHHHHHhhc
Confidence 3555667777776654
No 461
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=27.40 E-value=2e+02 Score=25.02 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=80.6
Q ss_pred HHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh----hcCCccEEEEeChHH----HHHHHHHHHH-cCCCCceEEEEcc
Q 022234 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL----NDTIFDWIIITSPEA----GSVFLEAWKE-AGTPNVRIGVVGA 135 (300)
Q Consensus 65 l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l----~~~~~d~ivFTS~~a----v~~~~~~l~~-~~~~~~~i~aVG~ 135 (300)
-.+.+++.|++...+.+-+.. ..+++...+ .+...|.|+..-|-- -+...+.... ..-|+.. +
T Consensus 55 k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~~-----~ 126 (285)
T 3l07_A 55 KEKACAQVGIDSQVITLPEHT---TESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH-----P 126 (285)
T ss_dssp HHHHHHHHTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCS-----H
T ss_pred HHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccCC-----h
Confidence 345667789988765542111 123444444 356899999988732 1223332211 1122222 2
Q ss_pred chHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCC--CCCCEEEEEc-CCCChhHHHHHHHhCCCeeEEEEeeeee
Q 022234 136 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTTE 212 (300)
Q Consensus 136 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~~ 212 (300)
.-.-.|. . |-...+.| -|+.+.++.|.... ..|+++++++ |+.....+...|...|+.|+.+ .++
T Consensus 127 ~N~G~l~-~------g~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~--hs~- 194 (285)
T 3l07_A 127 TNVGRLQ-L------RDKKCLES--CTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTC--HRF- 194 (285)
T ss_dssp HHHHHHH-H------TCTTCCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEE--CTT-
T ss_pred hheeehh-c------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEE--eCC-
Confidence 1111221 1 32123444 35677777776653 3789999997 4545666888899999987544 221
Q ss_pred eCCCCcHHHHHHcCCCCEEEEECh
Q 022234 213 PVHHVDQTVLKQALSIPVVAVASP 236 (300)
Q Consensus 213 ~~~~~~~~~~~~l~~~d~IvftS~ 236 (300)
.. .+.+.+...|+|+-+-+
T Consensus 195 --t~---~L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 195 --TT---DLKSHTTKADILIVAVG 213 (285)
T ss_dssp --CS---SHHHHHTTCSEEEECCC
T ss_pred --ch---hHHHhcccCCEEEECCC
Confidence 11 23334568899888776
No 462
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=27.40 E-value=74 Score=26.44 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=35.1
Q ss_pred EEEEEcCC--CChhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHcCCCCEEEEEC
Q 022234 179 TVLYPASA--KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 235 (300)
Q Consensus 179 ~vL~~rg~--~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~IvftS 235 (300)
+|+++... .....+.+.|.+.|+.+..+.+|.....+.. +.++|+||++-
T Consensus 2 ~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~-------~~~~d~lii~G 53 (236)
T 3l7n_A 2 RIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKD-------IDDFDMLILMG 53 (236)
T ss_dssp EEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSC-------GGGCSEEEECC
T ss_pred eEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCC-------ccccCEEEECC
Confidence 45555543 3456888999999999998888876544321 24789888875
No 463
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=27.29 E-value=56 Score=27.20 Aligned_cols=85 Identities=15% Similarity=0.031 Sum_probs=49.0
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCCEEEeeeeEeeeCCCc-hhHHHhh-hc--CCccEE--EEeChHHHHHH
Q 022234 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVL-ND--TIFDWI--IITSPEAGSVF 116 (300)
Q Consensus 46 ~~l~g~~VlitR~~---~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~-~~l~~~l-~~--~~~d~i--vFTS~~av~~~ 116 (300)
..+.|++||||... .=...+++.|.++|+.++.+-.-. ... .+..+.+ .. ....++ =+++..+++.+
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~ 91 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASR----AQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKL 91 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSS----SSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCc----chhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHH
Confidence 46789999999876 345789999999999886543211 111 1111111 11 111111 14788899888
Q ss_pred HHHHHHc-CCCCceEEEEc
Q 022234 117 LEAWKEA-GTPNVRIGVVG 134 (300)
Q Consensus 117 ~~~l~~~-~~~~~~i~aVG 134 (300)
++.+.+. +.-+.-|.+.|
T Consensus 92 ~~~~~~~~g~id~li~nAg 110 (267)
T 3gdg_A 92 VKDVVADFGQIDAFIANAG 110 (267)
T ss_dssp HHHHHHHTSCCSEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 8877554 22244444444
No 464
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=27.29 E-value=74 Score=26.88 Aligned_cols=84 Identities=10% Similarity=-0.012 Sum_probs=50.4
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEE--EeChHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWII--ITSPEAGSVFLEA 119 (300)
Q Consensus 46 ~~l~g~~VlitR~~---~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~iv--FTS~~av~~~~~~ 119 (300)
..+.||+||||... +=...+++.|.++|++++.+-.-. ..+.+.+.. ......++. +++..+++.+++.
T Consensus 22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 96 (280)
T 3nrc_A 22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-----FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVE 96 (280)
T ss_dssp CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-----CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-----HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHH
Confidence 45789999999854 235789999999999876543211 112222221 122332222 4788899998887
Q ss_pred HHHc-CCCCceEEEEc
Q 022234 120 WKEA-GTPNVRIGVVG 134 (300)
Q Consensus 120 l~~~-~~~~~~i~aVG 134 (300)
+.+. +.-+.-|.+.|
T Consensus 97 ~~~~~g~id~li~nAg 112 (280)
T 3nrc_A 97 LGKVWDGLDAIVHSIA 112 (280)
T ss_dssp HHHHCSSCCEEEECCC
T ss_pred HHHHcCCCCEEEECCc
Confidence 7654 22245555555
No 465
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=27.25 E-value=93 Score=24.85 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=32.3
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-h-cCC--ccEEEEeChHHH
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-N-DTI--FDWIIITSPEAG 113 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~-~~~--~d~ivFTS~~av 113 (300)
...+++.|++.|+++..... .+ +|.+.+.+.+ + ... +|.||.|-..++
T Consensus 42 ~~~L~~~l~~~G~~v~~~~i---v~-Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 42 GDIIKQLLIENGHKIIGYSL---VP-DDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEE---EC-SCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEE---eC-CCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 35788999999998776443 32 3556666666 2 233 899998866554
No 466
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=27.11 E-value=39 Score=29.44 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=38.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA 112 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a 112 (300)
.|.+|++..|.- ..+...++..|+++..+|+..-.. .|.+.+.+.+. .+...|++++++-
T Consensus 105 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~-~~~~~v~~~~p~n 164 (365)
T 3get_A 105 SKNAFLQAGVTF--AMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHK-DEIKLIFLCLPNN 164 (365)
T ss_dssp TTCEEEECSSCC--THHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT-TTEEEEEEESSCT
T ss_pred CCCEEEEeCCCh--HHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC-CCCCEEEEcCCCC
Confidence 578899988764 356667778899999998711111 23344544443 5678888876643
No 467
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=27.11 E-value=2.8e+02 Score=24.79 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=47.8
Q ss_pred hHHHHHHHHhCCCCEEEeeeeE----eeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccch
Q 022234 62 NGKLIKALAKHRIDCLELPLIQ----HAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 137 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~----~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~T 137 (300)
.+++.++|+++|++...+.+=- +.|+. +++.+. ....=.+..|..+++...+. +. .+.+|+|||-.+
T Consensus 190 t~~Ll~~L~~kGv~~a~vTLHVG~GTF~PV~--e~i~~H---~MHsE~~~V~~~ta~~in~a-ka---~G~RViAVGTTs 260 (345)
T 1wdi_A 190 TPELLERLREMGVELRFLTLHVGPGTFRPVK--GDPEKH---EMHAEPYAIPEEVAEAVNRA-KA---EGRRVVAVGTTV 260 (345)
T ss_dssp CHHHHHHHHHTTCEEEEEEEEESGGGCCC--------------CCCEEEEECHHHHHHHHHH-HH---TTCCEEEESHHH
T ss_pred CHHHHHHHHHCCCeEEEEEEeecCCCCcccc--cchhcC---CccceEEEECHHHHHHHHHH-HH---cCCeEEEEecch
Confidence 5889999999999987765532 33332 222211 22333445788888877654 33 356899999999
Q ss_pred HHHHHHH
Q 022234 138 ASIFEEV 144 (300)
Q Consensus 138 a~~L~~~ 144 (300)
.++|+..
T Consensus 261 vR~LEsa 267 (345)
T 1wdi_A 261 VRALESA 267 (345)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999986
No 468
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=27.08 E-value=1e+02 Score=29.24 Aligned_cols=104 Identities=9% Similarity=-0.013 Sum_probs=58.1
Q ss_pred CCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHH-HhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEE
Q 022234 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKAL-AKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWII 106 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VlitR~~~~~~~l~~~L-~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~iv 106 (300)
-|.++.|+.... +...+.||+|+|.-.....-.+++.| .+.|.+++.+-... ..+.+.++..+.....+.++
T Consensus 262 ~r~~~~~~~~~~----d~~~l~GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~~---~~~~~~~~~~~~~~~~~v~i 334 (525)
T 3aek_B 262 STLRQPWWSASV----DSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCYN---REMARPLRTAAAEYGLEALI 334 (525)
T ss_dssp TTCCHHHHHHSG----GGGGGTTCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEESC---GGGHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHhh----hhhhcCCCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecCc---hhHHHHHHHHHHhcCCcEEE
Confidence 456777877633 33789999999986666778899999 79999986543211 11222333333221224444
Q ss_pred EeChHHHHHHHHHHHHcCCCCceEEEEccchHHHHHHH
Q 022234 107 ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 144 (300)
Q Consensus 107 FTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 144 (300)
......+ .+.+.+... -++.-|..-+...++.
T Consensus 335 ~~D~~el---~~~i~~~~p---DL~ig~~~~~~~a~~~ 366 (525)
T 3aek_B 335 TDDYLEV---EKAIEAAAP---ELILGTQMERNIAKKL 366 (525)
T ss_dssp CSCHHHH---HHHHHHHCC---SEEEECHHHHHHHHHH
T ss_pred eCCHHHH---HHHHhhcCC---CEEEecchhHHHHHHc
Confidence 4444333 333333332 2444344555566666
No 469
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=27.02 E-value=82 Score=25.08 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=43.2
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHH--HH------HHHHHH
Q 022234 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGS--VF------LEAWKE 122 (300)
Q Consensus 51 ~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~--~~------~~~l~~ 122 (300)
++|+|..-...-....+.|++.|+++..++. + + .+..+|.||++-...-. .+ .+.+++
T Consensus 2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~------~--~------~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~ 67 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR------P--E------QLNEVDGLILPGGESTTMRRLIDTYQFMEPLRE 67 (196)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECS------G--G------GGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHH
T ss_pred cEEEEEEccCCcHHHHHHHHHCCCEEEEeCC------h--H------HHhhCCEEEECCCChhhHHHHhhhHHHHHHHHH
Confidence 6788886544455667999999998776543 1 1 13468999998764321 11 111111
Q ss_pred cCCCCceEEEEccch
Q 022234 123 AGTPNVRIGVVGAGT 137 (300)
Q Consensus 123 ~~~~~~~i~aVG~~T 137 (300)
....+.+++.|.-..
T Consensus 68 ~~~~~~pilgIC~G~ 82 (196)
T 2nv0_A 68 FAAQGKPMFGTCAGL 82 (196)
T ss_dssp HHHTTCCEEEETHHH
T ss_pred HHHCCCcEEEECHHH
Confidence 111367788777664
No 470
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=26.95 E-value=2.7e+02 Score=23.06 Aligned_cols=63 Identities=10% Similarity=0.031 Sum_probs=33.1
Q ss_pred hHHHHHHHhhccCCCccccccCCC--CcHHHH---HHhcccCCCCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEE
Q 022234 137 TASIFEEVIQSSKCSLDVAFSPSK--ATGKIL---ASELPKNGKKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 137 Ta~~L~~~~~~~~~G~~~~~~p~~--~~~e~L---~~~L~~~~~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~ 207 (300)
..+++++. |+.+.+.... .+.+.. ++.+..... .-+++. ..........+.+.+.|+.|..+.
T Consensus 25 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~v--dgiii~~~~~~~~~~~~~~~~~~giPvV~~~ 93 (297)
T 3rot_A 25 AKKAAEEL------KVDLQILAPPGANDVPKQVQFIESALATYP--SGIATTIPSDTAFSKSLQRANKLNIPVIAVD 93 (297)
T ss_dssp HHHHHHHH------TCEEEEECCSSSCCHHHHHHHHHHHHHTCC--SEEEECCCCSSTTHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHh------CcEEEEECCCCcCCHHHHHHHHHHHHHcCC--CEEEEeCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 45677778 9988766533 244433 333333221 223332 222223556677888888775443
No 471
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=26.94 E-value=44 Score=28.42 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=68.0
Q ss_pred cHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeeeCC-----C-----CcHHHHHHcCCCCEE
Q 022234 162 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH-----H-----VDQTVLKQALSIPVV 231 (300)
Q Consensus 162 ~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~-----~-----~~~~~~~~l~~~d~I 231 (300)
+..++...|.+....+ +++++++......+...|.+.|+ .++.+|.+.+.. . ..++..+.+.+.|+|
T Consensus 94 D~~G~~~~l~~~~~~~-~vliiGaGg~a~ai~~~L~~~G~--~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiV 170 (253)
T 3u62_A 94 DWVGVVKSLEGVEVKE-PVVVVGAGGAARAVIYALLQMGV--KDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSL 170 (253)
T ss_dssp HHHHHHHHTTTCCCCS-SEEEECCSHHHHHHHHHHHHTTC--CCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEE
T ss_pred hHHHHHHHHHhcCCCC-eEEEECcHHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEE
Confidence 4567888887654466 99999877767777888888886 345666553210 0 011122223578999
Q ss_pred EEEChHHHHH----H-HHHhcccCCCCceEEEe--C-HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHH
Q 022234 232 AVASPSAVRS----W-VNLISDTEQWSNSVACI--G-ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 294 (300)
Q Consensus 232 vftS~s~v~~----~-~~~~~~~~~~~~~vv~I--G-~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~ 294 (300)
+-+.|.+.+- + .+.+. .+..++-+ + ....+.+++.|++.++ +..+.|+..-...+
T Consensus 171 Inatp~gm~p~~~~i~~~~l~----~~~~V~Divy~~T~ll~~A~~~G~~~~~----~Gl~MLv~Qa~~af 233 (253)
T 3u62_A 171 FNTTSVGMKGEELPVSDDSLK----NLSLVYDVIYFDTPLVVKARKLGVKHII----KGNLMFYYQAMENL 233 (253)
T ss_dssp EECSSTTTTSCCCSCCHHHHT----TCSEEEECSSSCCHHHHHHHHHTCSEEE----CTHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCHHHhC----cCCEEEEeeCCCcHHHHHHHHCCCcEEE----CCHHHHHHHHHHHH
Confidence 9887765321 0 01111 12223321 3 2334567778977212 57777776555443
No 472
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=26.88 E-value=58 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=24.3
Q ss_pred EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 022234 258 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 258 ~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~ 291 (300)
.||+...+.|++.|++++ .....+.+..++++.
T Consensus 84 ~IG~~a~~~L~~~GI~v~-~~~~g~i~eal~~~~ 116 (136)
T 1o13_A 84 GIGRRAIAAFEAMGVKVI-KGASGTVEEVVNQYL 116 (136)
T ss_dssp CCCHHHHHHHHHTTCEEE-CSCCSBHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCEEE-ecCCCCHHHHHHHHH
Confidence 389999999999999974 434456666666543
No 473
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=26.86 E-value=1.9e+02 Score=21.19 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=16.8
Q ss_pred CCEEEEEcCCCChhHHHHHHHhC
Q 022234 177 KCTVLYPASAKASNEIEEGLSNR 199 (300)
Q Consensus 177 ~~~vL~~rg~~~~~~L~~~L~~~ 199 (300)
.++++++++......+.+.|...
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~ 26 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQG 26 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC
Confidence 35788887777777777777765
No 474
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=26.84 E-value=1.4e+02 Score=24.94 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=25.1
Q ss_pred CEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 022234 178 CTVLYPASAKASNEIEEGLSNRGFEVVRLN 207 (300)
Q Consensus 178 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 207 (300)
...|++++..+.+.+.+.|.++|+.+..-.
T Consensus 118 ~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 118 VKTLVLQPNNREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp CCEEEEEESSCHHHHHHHHHHTTEEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHCCCEEEEEE
Confidence 457888889999999999999998876644
No 475
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=26.84 E-value=66 Score=26.32 Aligned_cols=85 Identities=6% Similarity=0.062 Sum_probs=47.6
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhh-cCCccEEE--EeChHHHHHHHHHHH
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN-DTIFDWII--ITSPEAGSVFLEAWK 121 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~-~~~~d~iv--FTS~~av~~~~~~l~ 121 (300)
..+.|++||||..... ...+++.|.++|++|+.+-- .+ +..+.+.+.+. .....++. +++..+++.+++.+.
T Consensus 2 ~~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r---~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (251)
T 1zk4_A 2 NRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGR---HS-DVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATE 77 (251)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---CH-HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC---CH-HHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHH
Confidence 4578999999988653 46899999999998765421 00 00111111121 12222222 367788888777654
Q ss_pred Hc-CCCCceEEEEc
Q 022234 122 EA-GTPNVRIGVVG 134 (300)
Q Consensus 122 ~~-~~~~~~i~aVG 134 (300)
+. +.-+.-|.+.|
T Consensus 78 ~~~~~id~li~~Ag 91 (251)
T 1zk4_A 78 KAFGPVSTLVNNAG 91 (251)
T ss_dssp HHHSSCCEEEECCC
T ss_pred HHhCCCCEEEECCC
Confidence 43 22244455444
No 476
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=26.80 E-value=1.3e+02 Score=25.71 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=23.9
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 47 ~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
+-.+++||||...+. ...+++.|.+.|++|+.+
T Consensus 11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~ 44 (335)
T 1rpn_A 11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGL 44 (335)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 455899999998763 467888999999988764
No 477
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=26.79 E-value=62 Score=26.55 Aligned_cols=34 Identities=6% Similarity=0.007 Sum_probs=27.5
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
..+.|++||||..... ...+++.|.+.|++|+.+
T Consensus 7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~ 41 (255)
T 1fmc_A 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVS 41 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 5578999999988653 468999999999987654
No 478
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=26.77 E-value=1.9e+02 Score=21.12 Aligned_cols=123 Identities=6% Similarity=0.027 Sum_probs=0.0
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHh-CCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEe---ChHHHHHHHHHHH
Q 022234 47 SNSNPKVVVTRERG-KNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIIT---SPEAGSVFLEAWK 121 (300)
Q Consensus 47 ~l~g~~VlitR~~~-~~~~l~~~L~~-~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFT---S~~av~~~~~~l~ 121 (300)
++.+++||+.-... ....+...|++ .|+.++..-. +..+....+....+|.|+.- ....-..+.+.++
T Consensus 2 ~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~-------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~ 74 (153)
T 3cz5_A 2 SLSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAA-------DAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIR 74 (153)
T ss_dssp --CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEES-------SHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CCcccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeC-------CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHH
Q ss_pred HcCCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhcccCCCCCCEE
Q 022234 122 EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTV 180 (300)
Q Consensus 122 ~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~v 180 (300)
+....-..++..+........+.+..|..|+ +....+.+.|...+.........+
T Consensus 75 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~----l~kp~~~~~L~~~i~~~~~~~~~~ 129 (153)
T 3cz5_A 75 QWDGAARILIFTMHQGSAFALKAFEAGASGY----VTKSSDPAELVQAIEAILAGRRAM 129 (153)
T ss_dssp HHCTTCCEEEEESCCSHHHHHHHHHTTCSEE----EETTSCTTHHHHHHHHHTTTCCEE
T ss_pred HhCCCCeEEEEECCCCHHHHHHHHHCCCcEE----EecCCCHHHHHHHHHHHHhCCccC
No 479
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=26.66 E-value=55 Score=26.45 Aligned_cols=46 Identities=20% Similarity=0.040 Sum_probs=30.7
Q ss_pred HHHHHhcccCCCCCCEEEEEcC--CCChhHHHHHHHhCCCeeEEEEee
Q 022234 164 KILASELPKNGKKKCTVLYPAS--AKASNEIEEGLSNRGFEVVRLNTY 209 (300)
Q Consensus 164 e~L~~~L~~~~~~~~~vL~~rg--~~~~~~L~~~L~~~G~~v~~~~vY 209 (300)
..+++.+.+...+|+++++... ......+.+.|++.|+.+..+..+
T Consensus 159 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 206 (230)
T 3evz_A 159 VKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFK 206 (230)
T ss_dssp HHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEec
Confidence 4555566555556777776433 344678888999999988776553
No 480
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=26.60 E-value=74 Score=27.56 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=41.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPE 111 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~ 111 (300)
.|.+|+++.+.- ..+...++..|+++..+|+-. ....|.+.+.+.+ ..+...|++++++
T Consensus 107 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i-~~~~~~v~~~~p~ 165 (363)
T 3ffh_A 107 TTTNTVMATPTF--VQYRQNALIEGAEVREIPLLQ-DGEHDLEGMLNAI-DEKTTIVWICNPN 165 (363)
T ss_dssp TTCEEEEEESSC--HHHHHHHHHHTCEEEEEECCT-TSCCCHHHHHHHC-CTTEEEEEEESSC
T ss_pred CCCEEEEcCCCh--HHHHHHHHHcCCEEEEecCCC-CCCcCHHHHHHhc-ccCCCEEEEeCCC
Confidence 578899998764 457777888899999888753 1222556666655 2457888888774
No 481
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=26.55 E-value=81 Score=25.80 Aligned_cols=85 Identities=11% Similarity=0.024 Sum_probs=49.8
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcC--CccEEEE----eChHHHHHHH
Q 022234 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDT--IFDWIII----TSPEAGSVFL 117 (300)
Q Consensus 46 ~~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~--~~d~ivF----TS~~av~~~~ 117 (300)
..+.|++||||..... ...+++.|.++|++|+.+-- .....+++.+.+ ... ....+.+ ++..+++.++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~ 85 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGR----TEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELA 85 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEec----CHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHH
Confidence 4588999999988653 46899999999998765421 000112222222 121 2222322 7788888888
Q ss_pred HHHHHc-CCCCceEEEEc
Q 022234 118 EAWKEA-GTPNVRIGVVG 134 (300)
Q Consensus 118 ~~l~~~-~~~~~~i~aVG 134 (300)
+.+.+. +.-+.-|.+.|
T Consensus 86 ~~~~~~~g~id~lv~nAg 103 (247)
T 3i1j_A 86 ARVEHEFGRLDGLLHNAS 103 (247)
T ss_dssp HHHHHHHSCCSEEEECCC
T ss_pred HHHHHhCCCCCEEEECCc
Confidence 877553 22244444444
No 482
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=26.55 E-value=29 Score=28.34 Aligned_cols=58 Identities=10% Similarity=-0.039 Sum_probs=37.5
Q ss_pred hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhh-hcCCccEEEEeChH-------HHHHHHHHH
Q 022234 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NDTIFDWIIITSPE-------AGSVFLEAW 120 (300)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l-~~~~~d~ivFTS~~-------av~~~~~~l 120 (300)
+..+.+.+++.|.++..+-+++..+... +.+.... .+...|.|||.||. ..+.|++.+
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~-~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv 84 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGK-IDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDEV 84 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCC-CCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCc-hhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHHH
Confidence 5667788888899998888877554211 2233233 35689999999863 445555543
No 483
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=26.50 E-value=1.8e+02 Score=20.82 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=61.8
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEE----ChHHHHHHHHHhcccC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA----SPSAVRSWVNLISDTE 250 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivft----S~s~v~~~~~~~~~~~ 250 (300)
.+||++..+.. +..+...|+..|+.|.. + . ...+.++.+ ..+|+|+.= ..++.+ ++..+....
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~--~-~------~~~~al~~l~~~~~dlvi~D~~l~~~~g~~-~~~~l~~~~ 73 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPIT--A-F------SGEECLEALNATPPDLVLLDIMMEPMDGWE-TLERIKTDP 73 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE--E-S------SHHHHHHHHHHSCCSEEEEESCCSSSCHHH-HHHHHHHST
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEE--e-C------CHHHHHHHHhccCCCEEEEeCCCCCCCHHH-HHHHHHcCc
Confidence 47888876654 66788888888865421 1 1 122223222 467887763 223333 344444322
Q ss_pred -CCCceEEEeCH--HHHHHHHHcCCC-eEEecCCCCHHHHHHHHHHHHHc
Q 022234 251 -QWSNSVACIGE--TTASAAKRLGLK-NVYYPTHPGLEGWVDSILEALRE 296 (300)
Q Consensus 251 -~~~~~vv~IG~--~Ta~~l~~~G~~-~~~v~~~p~~~~l~~ai~~~~~~ 296 (300)
..+++++.++. .....+...|.. ..++....+.+.|.+.|...+..
T Consensus 74 ~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 74 ATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp TTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred ccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 23566666532 234455556643 24667767888999998877643
No 484
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=26.49 E-value=92 Score=25.33 Aligned_cols=70 Identities=9% Similarity=0.105 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCCEEEeeeeEeeeCCCchh----HHHhhhcCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccchH
Q 022234 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDR----LSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 138 (300)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~----l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta 138 (300)
.-+.+.++++|..+.. + ....+.+. +.+.+. ..+|+|+.++-..+..+.+.+.+.+.+++.++..+....
T Consensus 136 ~gf~~al~~~g~~~~~---~--~~~~~~~~~~~~~~~~l~-~~~~ai~~~~d~~A~g~~~al~~~g~~di~vig~d~~~~ 209 (255)
T 1byk_A 136 EAYLAFCKAHKLHPVA---A--LPGLAMKQGYENVAKVIT-PETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPL 209 (255)
T ss_dssp HHHHHHHHHTTCCCEE---E--CCCSCHHHHHHHSGGGCC-TTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEECCCHH
T ss_pred HHHHHHHHHcCCCcce---e--ecCCccchHHHHHHHHhc-CCCCEEEEeChHHHHHHHHHHHHcCCCcEEEEEeCCchh
Confidence 3466788888976431 1 11112221 222222 468999998888777888888888877788888877543
No 485
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=26.41 E-value=1.5e+02 Score=26.53 Aligned_cols=62 Identities=8% Similarity=0.042 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcH---HHHHHc--CCCCEEE-EEChHHHHH
Q 022234 177 KCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPVVA-VASPSAVRS 241 (300)
Q Consensus 177 ~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~l--~~~d~Iv-ftS~s~v~~ 241 (300)
|+|++++.+... .+.+.+.|++.|+.+. +|.-.......+ +..+.+ .+.|.|+ +-..+..+.
T Consensus 40 g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~---~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~ 113 (371)
T 1o2d_A 40 GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYE---IFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDF 113 (371)
T ss_dssp CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEE---EEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHHHH
T ss_pred CCEEEEEECchHHhhccHHHHHHHHHHHcCCeEE---EeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHH
Confidence 478999887632 2567778888887653 444333332222 223223 3678777 666665553
No 486
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}
Probab=26.39 E-value=90 Score=25.30 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=29.7
Q ss_pred CccEEEEeChHHHHHHHHHHHHcCCCCceEEEEccch---HHHHHHHhhccCCCccccccC
Q 022234 101 IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT---ASIFEEVIQSSKCSLDVAFSP 158 (300)
Q Consensus 101 ~~d~ivFTS~~av~~~~~~l~~~~~~~~~i~aVG~~T---a~~L~~~~~~~~~G~~~~~~p 158 (300)
.+|.++..++.....|...+...+.+.-.+++||... ...++.. |+.+..++
T Consensus 153 ~f~~i~~~~kp~~~~~~~~~~~l~~~~~~~i~iGD~~~~Di~~a~~a------G~~~~~v~ 207 (251)
T 2pke_A 153 LFPRIEVVSEKDPQTYARVLSEFDLPAERFVMIGNSLRSDVEPVLAI------GGWGIYTP 207 (251)
T ss_dssp TCCCEEEESCCSHHHHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHT------TCEEEECC
T ss_pred hCceeeeeCCCCHHHHHHHHHHhCcCchhEEEECCCchhhHHHHHHC------CCEEEEEC
Confidence 3566655554445555555555555555667777665 4556666 66665553
No 487
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=26.37 E-value=55 Score=24.09 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=24.5
Q ss_pred EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 022234 258 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 258 ~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~ 291 (300)
.||+...+.+++.|+++. .....+.+..++++.
T Consensus 71 ~iG~~a~~~L~~~GI~v~-~~~~~~v~eal~~~~ 103 (121)
T 2yx6_A 71 GIGRRAIEYFNSLGISVV-TGVYGRISDVIKAFI 103 (121)
T ss_dssp BCCHHHHHHHHHTTCEEE-CSBCSBHHHHHHHHH
T ss_pred CCCHhHHHHHHHCCCEEE-ECCCCCHHHHHHHHH
Confidence 389999999999999974 434456666666554
No 488
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=26.34 E-value=1.6e+02 Score=20.38 Aligned_cols=106 Identities=10% Similarity=0.100 Sum_probs=61.6
Q ss_pred CEEEEEcCCCC-hhHHHHHHHhCCCeeEEEEeeeeeeCCCCcHHHHHHc--CCCCEEEEE----ChHHHHHHHHHhcccC
Q 022234 178 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA----SPSAVRSWVNLISDTE 250 (300)
Q Consensus 178 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~Ivft----S~s~v~~~~~~~~~~~ 250 (300)
.+||++..+.. +..+...|+..|+.|. ... ...+.+..+ ..+|.|+.- ..++.+ ++..+....
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~---~~~------~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~-~~~~l~~~~ 73 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTF---QAA------NGLQALDIVTKERPDLVLLDMKIPGMDGIE-ILKRMKVID 73 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEE---EES------SHHHHHHHHHHHCCSEEEEESCCTTCCHHH-HHHHHHHHC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEE---EeC------CHHHHHHHHhccCCCEEEEecCCCCCCHHH-HHHHHHHhC
Confidence 57888877654 6677888888886542 111 112222222 367887763 112333 333333321
Q ss_pred CCCceEEEeC----HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHHH
Q 022234 251 QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 295 (300)
Q Consensus 251 ~~~~~vv~IG----~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~~~~~ 295 (300)
.+.+++.++ ......+.+.|... ++....+.+.+.+.+...+.
T Consensus 74 -~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 74 -ENIRVIIMTAYGELDMIQESKELGALT-HFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp -TTCEEEEEESSCCHHHHHHHHHHTCCC-EEESSCCHHHHHHHHHHHSC
T ss_pred -CCCCEEEEEccCchHHHHHHHhcChHh-hccCCCCHHHHHHHHHHHhc
Confidence 356666653 33455566778864 56677799999999987764
No 489
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=26.34 E-value=47 Score=29.39 Aligned_cols=74 Identities=9% Similarity=-0.037 Sum_probs=48.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHH-------HHHHHHHHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEA-------GSVFLEAWK 121 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~a-------v~~~~~~l~ 121 (300)
.|.+|+++.+.-....+...++..|+++..+|+-.- ...|.+.+.+.+...+...|++++++. ++.+.+.++
T Consensus 85 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 163 (416)
T 3isl_A 85 PEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWG-TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACR 163 (416)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHH
T ss_pred CCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCC-CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHH
Confidence 577899998764333477788889999999886321 112556676666433568899988632 345555555
Q ss_pred Hc
Q 022234 122 EA 123 (300)
Q Consensus 122 ~~ 123 (300)
+.
T Consensus 164 ~~ 165 (416)
T 3isl_A 164 TE 165 (416)
T ss_dssp HT
T ss_pred Hc
Confidence 54
No 490
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=26.27 E-value=1.3e+02 Score=21.86 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=27.0
Q ss_pred HHHHHhcccCCCCCCEEEEEcCCCCh---hHHHHHHHhCCCe
Q 022234 164 KILASELPKNGKKKCTVLYPASAKAS---NEIEEGLSNRGFE 202 (300)
Q Consensus 164 e~L~~~L~~~~~~~~~vL~~rg~~~~---~~L~~~L~~~G~~ 202 (300)
+.|.+.+.... ++++|++.|....+ ......|++.|++
T Consensus 59 ~~l~~~~~~l~-~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~ 99 (124)
T 3flh_A 59 KDLATRIGELD-PAKTYVVYDWTGGTTLGKTALLVLLSAGFE 99 (124)
T ss_dssp HHHHHHGGGSC-TTSEEEEECSSSSCSHHHHHHHHHHHHTCE
T ss_pred HHHHHHHhcCC-CCCeEEEEeCCCCchHHHHHHHHHHHcCCe
Confidence 45555555443 56788888887766 6778899999974
No 491
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=26.21 E-value=63 Score=23.89 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=24.9
Q ss_pred EeCHHHHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 022234 258 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 291 (300)
Q Consensus 258 ~IG~~Ta~~l~~~G~~~~~v~~~p~~~~l~~ai~ 291 (300)
.||+...+.|.+.|++++. ....+.+..++++.
T Consensus 73 ~iG~~a~~~L~~~GI~v~~-~~~~~i~eal~~~~ 105 (124)
T 1eo1_A 73 SPGPNAFEVLNELGIKIYR-ATGTSVEENLKLFT 105 (124)
T ss_dssp CSSHHHHHHHHHHTCEEEE-CCSCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHCCCEEEE-cCCCCHHHHHHHHH
Confidence 3899999999999999754 34457776666554
No 492
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=26.20 E-value=93 Score=25.73 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=45.1
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc-CCCCc
Q 022234 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA-GTPNV 128 (300)
Q Consensus 51 ~~VlitR~~~-~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~-~~~~~ 128 (300)
|+||||.... =...+++.|.+.|++|+.+-. .....+.+.+ +.....+...+ +..+++.+++.+.+. +.-+.
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~-l~~~~~~~~~~-d~~~v~~~~~~~~~~~g~iD~ 75 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDE----SFKQKDELEA-FAETYPQLKPM-SEQEPAELIEAVTSAYGQVDV 75 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCG----GGGSHHHHHH-HHHHCTTSEEC-CCCSHHHHHHHHHHHHSCCCE
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHH-HHhcCCcEEEE-CHHHHHHHHHHHHHHhCCCCE
Confidence 5799998764 357899999999998775421 1111122222 31112233333 888888887766543 33345
Q ss_pred eEEEEcc
Q 022234 129 RIGVVGA 135 (300)
Q Consensus 129 ~i~aVG~ 135 (300)
-|.+.|-
T Consensus 76 lv~nAg~ 82 (254)
T 1zmt_A 76 LVSNDIF 82 (254)
T ss_dssp EEEECCC
T ss_pred EEECCCc
Confidence 5555553
No 493
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=26.20 E-value=57 Score=27.66 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=24.5
Q ss_pred CeEEEeCCCCc-hHHHHHHHHhCCCCEEEe
Q 022234 51 PKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (300)
Q Consensus 51 ~~VlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (300)
||||||...+- ...+++.|.++|++|..+
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l 30 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLV 30 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 78999998763 578999999999998775
No 494
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=26.15 E-value=1.6e+02 Score=25.31 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=48.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeee--CCCchhHHHhhhcCCccEEEEeChHH----------HHHH
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ--GPDTDRLSSVLNDTIFDWIIITSPEA----------GSVF 116 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~--~~~~~~l~~~l~~~~~d~ivFTS~~a----------v~~~ 116 (300)
.|.+|++..+.- ......++..|+++..+|+-.-.. ..|.+.+.+.+ ..+...|++++++. ++.+
T Consensus 105 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l 181 (383)
T 3kax_A 105 ENESVLVQPPIY--PPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLLCSPHNPIGRVWKKEELTKL 181 (383)
T ss_dssp TTCEEEECSSCC--HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEEESSBTTTTBCCCHHHHHHH
T ss_pred CCCEEEEcCCCc--HHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEEeCCCCCCCcCcCHHHHHHH
Confidence 478899988864 456677888999999999864211 12556676666 45677888877643 4555
Q ss_pred HHHHHHc
Q 022234 117 LEAWKEA 123 (300)
Q Consensus 117 ~~~l~~~ 123 (300)
.+.+++.
T Consensus 182 ~~~~~~~ 188 (383)
T 3kax_A 182 GSLCTKY 188 (383)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 5555554
No 495
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=26.14 E-value=1.5e+02 Score=25.15 Aligned_cols=113 Identities=11% Similarity=0.034 Sum_probs=65.4
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCCEEEeeeeEeeeC---C-Cc-hhHHHhhhcCCccEEEEeChHHHHHHHHHHHHc
Q 022234 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG---P-DT-DRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEA 123 (300)
Q Consensus 49 ~g~~VlitR~~~~~~~l~~~L~~~G~~v~~~P~i~~~~~---~-~~-~~l~~~l~~~~~d~ivFTS~~av~~~~~~l~~~ 123 (300)
.+++|.+-.-. ..+.+.|++. .++..+-. .|. + +. +..... -+...|+++.|...=+..-+..+-+.
T Consensus 115 ~~~kV~vIG~~---p~l~~~l~~~-~~v~V~d~---~p~~~~~~~~~~~~e~~-~l~~~D~v~iTGsTlvN~Ti~~lL~~ 186 (249)
T 3npg_A 115 EIKRIAIIGNM---PPVVRTLKEK-YEVYVFER---NMKLWDRDTYSDTLEYH-ILPEVDGIIASASCIVNGTLDMILDR 186 (249)
T ss_dssp CCSEEEEESCC---HHHHHHHTTT-SEEEEECC---SGGGCCSSEECGGGHHH-HGGGCSEEEEETTHHHHTCHHHHHHH
T ss_pred CCCEEEEECCC---HHHHHHHhcc-CCEEEEEC---CCcccCCCCCChhHHHh-hhccCCEEEEEeeeeccCCHHHHHHh
Confidence 35888888765 5678888776 55444332 221 1 11 111111 25689999999999887777766665
Q ss_pred CCCCceEEEEccchHHHHHHHhhccCCCccccccCCCCcHHHHHHhccc
Q 022234 124 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 172 (300)
Q Consensus 124 ~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 172 (300)
..+...++.+||.|. .+-+.| -..|++..-.-.--+.+.+++.+..
T Consensus 187 ~~~~~~vvl~GPS~~-~~P~~~--~~~Gv~~l~g~~v~d~~~~l~~i~~ 232 (249)
T 3npg_A 187 AKKAKLIVITGPTGQ-LLPEFL--KGTKVTHLASMKVTNIEKALVKLKL 232 (249)
T ss_dssp CSSCSEEEEESGGGC-SCGGGG--TTSSCCEEEEEEESCHHHHHHHHHH
T ss_pred CcccCeEEEEecCch-hhHHHH--hhCCccEEEEEEecCHHHHHHHHHc
Confidence 545567899999885 333331 0015543211112356777766654
No 496
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=26.06 E-value=1.7e+02 Score=24.23 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=47.3
Q ss_pred CCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEE----EeChHHHHHHHHHHHH
Q 022234 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWII----ITSPEAGSVFLEAWKE 122 (300)
Q Consensus 48 l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~iv----FTS~~av~~~~~~l~~ 122 (300)
..+++||||..... ...+++.|.+.|++++..-..... ..+.+.+.+.....+..+ +++..+++.+++.+.+
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANRE---AADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDR 100 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChh---HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35789999988753 568999999999987543111100 111222222111222222 3678888888887755
Q ss_pred c-CCCCceEEEEc
Q 022234 123 A-GTPNVRIGVVG 134 (300)
Q Consensus 123 ~-~~~~~~i~aVG 134 (300)
. +.-+.-|.+.|
T Consensus 101 ~~g~id~li~nAg 113 (272)
T 4e3z_A 101 QFGRLDGLVNNAG 113 (272)
T ss_dssp HHSCCCEEEECCC
T ss_pred hCCCCCEEEECCC
Confidence 3 22244444444
No 497
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=25.87 E-value=86 Score=26.42 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=47.2
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEE----EeChHHHHHHHHHHH
Q 022234 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWII----ITSPEAGSVFLEAWK 121 (300)
Q Consensus 47 ~l~g~~VlitR~~~~-~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~iv----FTS~~av~~~~~~l~ 121 (300)
.+.|++||||..... ...+++.|.+.|++|+.+-. .+ ...+.+.+.+.....+..+ +++..+++.+++.+.
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r---~~-~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 94 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCAR---GE-EGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVV 94 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---CH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CH-HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 477899999988753 46899999999998765421 00 0111122222111122222 367888888877665
Q ss_pred Hc-CCCCceEEEEc
Q 022234 122 EA-GTPNVRIGVVG 134 (300)
Q Consensus 122 ~~-~~~~~~i~aVG 134 (300)
+. +.-+.-|.+.|
T Consensus 95 ~~~g~iD~lv~~Ag 108 (277)
T 2rhc_B 95 ERYGPVDVLVNNAG 108 (277)
T ss_dssp HHTCSCSEEEECCC
T ss_pred HHhCCCCEEEECCC
Confidence 43 22244444444
No 498
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=25.84 E-value=64 Score=23.69 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=24.0
Q ss_pred eCHHHHHHHHHcCCCeEEecCCC-CHHHHHHHHH
Q 022234 259 IGETTASAAKRLGLKNVYYPTHP-GLEGWVDSIL 291 (300)
Q Consensus 259 IG~~Ta~~l~~~G~~~~~v~~~p-~~~~l~~ai~ 291 (300)
||+...+.+.+.|+++. ..... +.+..++++.
T Consensus 76 iG~~a~~~L~~~GI~v~-~~~~g~~i~eal~~~~ 108 (120)
T 2wfb_A 76 VGPKAFQALQAAGIKVG-QDLEGLTVRQAVQRFL 108 (120)
T ss_dssp CCHHHHHHHHHTTCEEE-CCCTTSBHHHHHHHHH
T ss_pred CCHhHHHHHHHCCCEEE-EcCCCCcHHHHHHHHH
Confidence 89999999999999974 44444 6666666554
No 499
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=25.81 E-value=1.5e+02 Score=25.30 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=47.0
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCCEEEeeeeEeeeCCCchhHHHhhhcCCccEEEE-eChHHHHHHHHHHHH
Q 022234 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIII-TSPEAGSVFLEAWKE 122 (300)
Q Consensus 49 ~g~~VlitR~~~-----~~~~l~~~L~~~G~~v~~~P~i~~~~~~~~~~l~~~l~~~~~d~ivF-TS~~av~~~~~~l~~ 122 (300)
..++|.+..... ..+.+.+.++++|+++...-.+... ..+.....+.+.....|.|++ .+......++..+.+
T Consensus 137 g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~-~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~ 215 (356)
T 3ipc_A 137 KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVG-DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAAD 215 (356)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTT-CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCC-CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHH
Confidence 346777665532 2346777888999886432222111 123333333333467888884 455566677788888
Q ss_pred cCCCCceEEE
Q 022234 123 AGTPNVRIGV 132 (300)
Q Consensus 123 ~~~~~~~i~a 132 (300)
.+.+ .+++.
T Consensus 216 ~g~~-~~~~~ 224 (356)
T 3ipc_A 216 QGLK-AKLVS 224 (356)
T ss_dssp HTCC-CEEEE
T ss_pred CCCC-CcEEE
Confidence 7764 55544
No 500
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=25.80 E-value=1.2e+02 Score=27.09 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=25.9
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCC-CCEEEe
Q 022234 47 SNSNPKVVVTRERG-KNGKLIKALAKHR-IDCLEL 79 (300)
Q Consensus 47 ~l~g~~VlitR~~~-~~~~l~~~L~~~G-~~v~~~ 79 (300)
.+.||+||||...+ -...+++.|.+.| ..++.+
T Consensus 32 ~~~~k~vLVTGatG~IG~~l~~~L~~~g~~~V~~~ 66 (399)
T 3nzo_A 32 VVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVV 66 (399)
T ss_dssp HHHTCEEEEETTTSHHHHHHHHHHHTTCCSEEEEE
T ss_pred HhCCCEEEEEcCChHHHHHHHHHHHHCCCCEEEEE
Confidence 35689999999765 3578999999999 566654
Done!