Query 022235
Match_columns 300
No_of_seqs 163 out of 1200
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:03:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01980 sufB FeS assembly pr 100.0 2.2E-38 4.8E-43 308.8 24.9 222 69-300 35-276 (448)
2 PRK11814 cysteine desulfurase 100.0 1.8E-36 3.9E-41 297.5 24.7 222 69-300 50-305 (486)
3 PRK10948 cysteine desulfurase 100.0 6.3E-36 1.4E-40 289.2 22.6 210 75-300 28-242 (424)
4 CHL00085 ycf24 putative ABC tr 100.0 1.9E-35 4.2E-40 290.4 23.1 222 69-300 51-304 (485)
5 TIGR01981 sufD FeS assembly pr 100.0 5.6E-31 1.2E-35 251.4 21.9 193 89-300 1-197 (366)
6 COG0719 SufB Cysteine desulfur 99.9 4.1E-26 8.9E-31 220.8 19.3 220 69-300 11-234 (412)
7 PF01458 UPF0051: Uncharacteri 99.0 2.4E-09 5.1E-14 96.2 11.3 75 225-300 3-77 (229)
8 PF01458 UPF0051: Uncharacteri 95.7 0.42 9.1E-06 42.7 14.1 95 192-299 8-103 (229)
9 PRK10948 cysteine desulfurase 91.3 6.1 0.00013 38.9 14.0 86 190-286 171-256 (424)
10 TIGR01981 sufD FeS assembly pr 88.7 10 0.00022 36.4 13.0 98 190-298 124-222 (366)
11 TIGR01980 sufB FeS assembly pr 85.7 23 0.00049 35.2 13.8 85 191-286 205-290 (448)
12 PF01774 UreD: UreD urease acc 83.2 14 0.00029 32.6 10.0 73 227-299 15-90 (209)
13 PRK11814 cysteine desulfurase 81.7 11 0.00024 37.8 9.8 75 226-300 192-269 (486)
14 CHL00085 ycf24 putative ABC tr 77.3 18 0.00038 36.3 9.7 74 227-300 192-268 (485)
15 COG0829 UreH Urease accessory 75.5 34 0.00074 31.6 10.3 108 187-300 26-135 (269)
16 COG0719 SufB Cysteine desulfur 67.7 65 0.0014 31.5 10.9 86 193-289 166-251 (412)
17 PF06069 PerC: PerC transcript 45.3 20 0.00043 27.5 2.5 31 70-100 57-88 (90)
18 PF08122 NDUF_B12: NADH-ubiqui 27.1 16 0.00035 25.5 -0.6 13 90-102 4-16 (57)
19 PF11154 DUF2934: Protein of u 22.5 51 0.0011 21.2 1.2 25 73-97 5-30 (40)
No 1
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=100.00 E-value=2.2e-38 Score=308.81 Aligned_cols=222 Identities=16% Similarity=0.158 Sum_probs=186.2
Q ss_pred CChhHHHHHHHHHHHhhcCCCCC--CCCCCCCCCCCccccccCCCCCCC----CCC---C---CCCC-----CCCCcceE
Q 022235 69 QPLPLQKLRDSSSQTLLSTPWPS--RKDEPFRFTDTSMIKSSQIQPITR----PSS---S---LDVS-----TDAQFPSL 131 (300)
Q Consensus 69 ~p~~L~~~R~~a~e~~~~~g~Pt--rk~E~WryTdL~~l~~~~~~~~~~----~~~---~---~~~~-----~~~~~~~l 131 (300)
+|.||.++|++|++.|.++|||+ +|+|+|||||++.+...++..... +.. . ..++ ..++.. +
T Consensus 35 ep~wl~~~R~~A~~~~~~l~~P~~~~~~e~w~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~ 113 (448)
T TIGR01980 35 EPDWMLDFRLRALELFEKMPMPTWGPDLSGIDYEDIVYYSKPDKKKATSWDEVPDEIKDTFEKLGIPEAERKALAGVG-A 113 (448)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCCCCCCcCccccEEeecccccccCChhhCCHHHHHHHHHcCCChHHhhhcCceE-E
Confidence 79999999999999999999999 999999999998776543311110 111 0 1122 234456 9
Q ss_pred EEECCEEeccccCCCCCCCCeEEEecccCc---hhHHHHhhccccccccCcHhHHHhhccCCceEEEEECCCceecccEE
Q 022235 132 VLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIY 208 (300)
Q Consensus 132 vfvnG~~~~~~s~~~~lp~GV~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLN~A~~~dG~~I~Vp~g~~le~PI~ 208 (300)
+|+||.+...+++.. .++||+++++++|. ++++++|+++... ..+|+|++||+|++++|+|||||+|+++++||+
T Consensus 114 ~~~~~~~~~~ls~~l-~~~GV~~~~l~~a~~~~~~~v~~~l~~~~~-~~~~~f~aLn~A~~~~G~~i~Vp~g~~~~~Pi~ 191 (448)
T TIGR01980 114 QYDSEVIYHNIKEDL-EEKGVIFCDMDTALKEYPDLVKEYFMSVVP-PSDNKFAALNGAVWSGGSFVYVPKGVRVDMPLQ 191 (448)
T ss_pred EEcCEEEEEcchhHH-hcCCEEEecHHHHHHhCHHHHHHHHhccCC-CcccHHHhHhhcccCceEEEEECCCCEeCCCEE
Confidence 999999998887643 28899999999886 6779999988544 247899999999999999999999999999999
Q ss_pred EEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEEEEEEEeecCCCcEEEe
Q 022235 209 LKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIK 288 (300)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v~~~~iQ~~~~~s~h~~ 288 (300)
++|+.++.+ ..+++|++|++|+||+++|||+|.+......+++|+++||++++||+|+|+++|+|+.+++|+.
T Consensus 192 ~~~~~~~~~-------~~~~~r~lIi~ee~s~~~iie~~~s~~~~~~~~~~~v~Ei~v~~~A~v~~~~iq~~~~~~~~~~ 264 (448)
T TIGR01980 192 TYFRINSEN-------TGQFEHTLIIADEGASVHYIEGCSAPIYSTNSLHAAVVELIVKEDARVRYSTVQNWSKNVYNLV 264 (448)
T ss_pred EEEEEcCCc-------cceeeeEEEEECCCCEEEEEEeccccCCCccceEEEEEEEEEcCCCEEEEEEEeecCCCeEEEE
Confidence 999987643 4688999999999999999999998522356899999999999999999999999999999999
Q ss_pred eeEEEEcCCCCC
Q 022235 289 WTAVRQLVVMSL 300 (300)
Q Consensus 289 ~~~v~q~~dS~l 300 (300)
++++.++++|++
T Consensus 265 ~~~~~~~~~a~~ 276 (448)
T TIGR01980 265 TKRALVEENGTM 276 (448)
T ss_pred EEEEEEcCCCEE
Confidence 999999999864
No 2
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=100.00 E-value=1.8e-36 Score=297.50 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=182.8
Q ss_pred CChhHHHHHHHHHHHhhcCCCCC---CCCCCCCCCCCccccccCC---CCC--CCCCC------CCCCC--CC-------
Q 022235 69 QPLPLQKLRDSSSQTLLSTPWPS---RKDEPFRFTDTSMIKSSQI---QPI--TRPSS------SLDVS--TD------- 125 (300)
Q Consensus 69 ~p~~L~~~R~~a~e~~~~~g~Pt---rk~E~WryTdL~~l~~~~~---~~~--~~~~~------~~~~~--~~------- 125 (300)
+|.||.++|++|++.|.+++||+ +|.|+|+|||+..+...++ .+. ..+.+ ...++ +.
T Consensus 50 ep~Wl~~~R~~A~~~~~~l~~P~~~~~~~e~w~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 129 (486)
T PRK11814 50 EPEWMLEWRLKAYRHWLTMEEPHWAKVHYPPIDYQDISYYSAPKCKSKPKSLDEVDPELLETFEKLGIPLREQKRLAGRE 129 (486)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcccceeeeccccccccCCcccCCHHHHHHHHhcCCCHHHHhhhhccc
Confidence 79999999999999999999999 8999999999987765333 110 01111 01122 11
Q ss_pred CCcceEEEECCEEeccccCCCCCCCCeEEEecccCc---hhHHHHhhccccccccCcHhHHHhhccCCceEEEEECCCce
Q 022235 126 AQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCK 202 (300)
Q Consensus 126 ~~~~~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLN~A~~~dG~~I~Vp~g~~ 202 (300)
.... ++|++|.+...++... .++||+++++++|. ++++++|+++... ..+|+|++||+|++++|+|||||+|++
T Consensus 130 ~~~~-~v~~~~~~~~~ls~~l-~~~GV~~~~l~~a~~~~~~lv~~~l~~~~~-~~~~~f~aLn~A~~~~G~fi~Vp~gv~ 206 (486)
T PRK11814 130 VAVD-AVFDSVSVATTFKEKL-AEAGVIFCSISEAIQEHPELVKKYLGSVVP-VNDNFFAALNSAVFSDGSFVYIPKGVR 206 (486)
T ss_pred cceE-EEEcCeEEEeccCchh-hcCCeEEEcHHHHhhhhHHHHHHHhccCCC-CCchHHHHHHHhhcCCeEEEEECCCCc
Confidence 2345 9999999998887643 28999999999886 6779999988544 347899999999999999999999999
Q ss_pred ecccEEEEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEEEEEEEeec--
Q 022235 203 VENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQ-- 280 (300)
Q Consensus 203 le~PI~i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v~~~~iQ~~-- 280 (300)
++.||++++..++.+ ..+++|++|++|+||+++|||+|.+..+...+++|+|+||++++||+|+|++||+|
T Consensus 207 ~~~pi~~~~~~~~~~-------~~~~~r~lIi~ee~S~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~ 279 (486)
T PRK11814 207 CPMELSTYFRINAAN-------TGQFERTLIIADEGSYVSYLEGCTAPMRDENQLHAAVVELVALDDAEIKYSTVQNWYP 279 (486)
T ss_pred eeEEEEEEEeecCCC-------cceeeEEEEEECCCCEEEEEEEecCCCCCccceeeEEEEEEECCCCEEEEEEEEeecC
Confidence 999999998876543 47899999999999999999999985233568999999999999999999999999
Q ss_pred -----CCCcEEEeeeEEE-EcCCCCC
Q 022235 281 -----SLNAAHIKWTAVR-QLVVMSL 300 (300)
Q Consensus 281 -----~~~s~h~~~~~v~-q~~dS~l 300 (300)
+.+++|+.+.++. ++++|++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~s~~ 305 (486)
T PRK11814 280 GDENGKGGIYNFVTKRGLCRGENSKI 305 (486)
T ss_pred ccccCCCceEEEeeeEEEEecCCcEE
Confidence 8889999999988 9999863
No 3
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional
Probab=100.00 E-value=6.3e-36 Score=289.24 Aligned_cols=210 Identities=18% Similarity=0.178 Sum_probs=168.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccccccCCCCCC-CC--CC-CCCCC-CCCCcceEEEECCEEeccccCCCCCC
Q 022235 75 KLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT-RP--SS-SLDVS-TDAQFPSLVLIDGFIQNSALNLSNLP 149 (300)
Q Consensus 75 ~~R~~a~e~~~~~g~Ptrk~E~WryTdL~~l~~~~~~~~~-~~--~~-~~~~~-~~~~~~~lvfvnG~~~~~~s~~~~lp 149 (300)
++|++||+.|.++|||++|+|+||||||+.+....|.+.. .. .. ...++ +.+.++ +||+||.+.+.+|+.. ++
T Consensus 28 ~~r~~a~~~~~~~glPt~k~E~WkyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lvfvnG~~~~~ls~~~-~~ 105 (424)
T PRK10948 28 PQARQHWQQVLRLGLPTRKHEDWKYTPLEGLLNSQFVFSIAAEISPAQRDALALTIDAVR-LVFVDGRFSPALSDST-EG 105 (424)
T ss_pred HHHHHHHHHHHhCCCCCCCCcCcCCCCHHHHhccccccccccccChhhhhhccccCCceE-EEEECCEEchhhCccc-CC
Confidence 8999999999999999999999999999999876553211 11 11 11122 335556 9999999999998843 33
Q ss_pred CCeEEEecccCchhHHHHhhccccccccCcHhHHHhhccCCceEEEEECCCceecccEEEEEEEcCCCccCCCCCcceee
Q 022235 150 DGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNP 229 (300)
Q Consensus 150 ~GV~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLN~A~~~dG~~I~Vp~g~~le~PI~i~~~~~~~~~~~~~~~~~~~~ 229 (300)
+ +.++++. +... +.... ..|+|++||+|++++|++||||+|+.+++||+|+|+.++.++ ......++
T Consensus 106 ~-v~v~~~~-a~~~-----~~~~~---~~d~f~aLN~A~~~~g~~i~v~~~~~~~~Pi~i~~~~~~~~~---~~~~~~~~ 172 (424)
T PRK10948 106 P-YQVSIND-DRQG-----LPAAI---QPEVFLHLTESLAQSVTHIRLPRGQRPAKPLYLLHITQGVAG---EELNTAHY 172 (424)
T ss_pred C-eEEEEch-hhhh-----ccccc---cccHHHHHHHhhCcCCEEEEECCCCccccCEEEEEEecCCCc---cccccccc
Confidence 4 8887755 3222 11111 257999999999999999999999999999999999766321 00025799
Q ss_pred eEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEEEEEEEeecCCCcEEEeeeEEEEcCCCCC
Q 022235 230 RVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQLVVMSL 300 (300)
Q Consensus 230 R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v~~~~iQ~~~~~s~h~~~~~v~q~~dS~l 300 (300)
|++|++|+||+++|||+|.+.+ +..+|+|.++||++++||+|+|+++|.++.+++|+.++++.++++|++
T Consensus 173 r~lI~~e~~a~~tiie~~~s~~-~~~~~~n~v~ei~~~~~A~l~~~~lq~~~~~~~~~~~~~~~~~~~s~~ 242 (424)
T PRK10948 173 RHHLDLAEGAEATVIEHFVSLN-EARHFTGARLTMNVADNAHLNHIKLAFENPSSYHFAHNDLLLGRDARA 242 (424)
T ss_pred eEEEEECCCCEEEEEEEeecCC-CCceeEeeeEEEEECCCCEEEEEEEEccCCCcEEEEEeEEEEcCCCEE
Confidence 9999999999999999999853 356899999999999999999999999999999999999999999874
No 4
>CHL00085 ycf24 putative ABC transporter
Probab=100.00 E-value=1.9e-35 Score=290.37 Aligned_cols=222 Identities=14% Similarity=0.092 Sum_probs=176.7
Q ss_pred CChhHHHHHHHHHHHhhcCCCCC---CCCCCCCCCCCcc----ccccCCCCCC-CCCC------CCCCCC-------CCC
Q 022235 69 QPLPLQKLRDSSSQTLLSTPWPS---RKDEPFRFTDTSM----IKSSQIQPIT-RPSS------SLDVST-------DAQ 127 (300)
Q Consensus 69 ~p~~L~~~R~~a~e~~~~~g~Pt---rk~E~WryTdL~~----l~~~~~~~~~-~~~~------~~~~~~-------~~~ 127 (300)
+|.||.++|++|++.|.++|||+ +|.|+|||||++. +......... .+.+ ...++. ...
T Consensus 51 ep~Wl~~~R~~A~~~~~~~~~P~~~~~~~e~w~~t~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 130 (485)
T CHL00085 51 EPIFLLIFRLKAYKKWKKMKEPDWAFLKYPEIDYQDISYYSAPKLKKKLNSLDEVDPELLDTFEKLGISLNEQKRLANVA 130 (485)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCchhceeeeccccccccCChhhCCHHHHHHHHhcCCCHHHHhhhcCCc
Confidence 79999999999999999999999 8999999999983 2211100000 0000 011111 123
Q ss_pred cceEEEECCEEeccccCCCCCCCCeEEEecccCc---hhHHHHhhccccccccCcHhHHHhhccCCceEEEEECCCceec
Q 022235 128 FPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVE 204 (300)
Q Consensus 128 ~~~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLN~A~~~dG~~I~Vp~g~~le 204 (300)
.. +||++|.+...++... .++||+++++++|. ++++++|+++... ..+|+|++||+|++++|+|||||+|++++
T Consensus 131 ~~-~v~~~~~~~~~l~~~l-~~~Gv~~~~l~~a~~~~~~lv~~yl~~~~~-~~~~~f~aLn~A~~~~G~fi~Vp~gv~~~ 207 (485)
T CHL00085 131 VD-AVFDSVSIGTTFKEEL-AKAGVIFCSISEAIQKYPELIKKYLGSVVP-IGDNYFAALNSAVFSDGSFCYIPKDTKCP 207 (485)
T ss_pred eE-EEEccEEEEeeccchh-hcCCeEEEcHHHHHhhhHHHHHHHhcccCC-CCchHHHHHHHHHcCCeEEEEECCCCcce
Confidence 35 8999999988877643 28899999999886 6678999988544 24789999999999999999999999999
Q ss_pred ccEEEEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEEEEEEEeecC---
Q 022235 205 NPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQS--- 281 (300)
Q Consensus 205 ~PI~i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v~~~~iQ~~~--- 281 (300)
.||++++..++++ ..+++|++|++|+||+++|||+|.+..+...+++|+|+||++++||+|+|++||+|+
T Consensus 208 ~pl~~~~~~~~~~-------~~~~~r~lIi~eega~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~~~ 280 (485)
T CHL00085 208 LELSTYFRINNEE-------SGQFERTLIIAEENSYVSYLEGCTAPQYDTNQLHAAVVELIALENAEIKYSTVQNWYAGD 280 (485)
T ss_pred EEEEEEEeecCCc-------cceeeeEEEEECCCCEEEEEEEeccCCCCccceEEEEEEEEECCCCEEEEEEEEeecCcc
Confidence 9999988776533 478999999999999999999999853345789999999999999999999999996
Q ss_pred ----CCcEEEeeeEEEE-cCCCCC
Q 022235 282 ----LNAAHIKWTAVRQ-LVVMSL 300 (300)
Q Consensus 282 ----~~s~h~~~~~v~q-~~dS~l 300 (300)
.+++|+.+.++.+ +++|++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~ 304 (485)
T CHL00085 281 ENGEGGIYNFVTKRGLCAGKNSKI 304 (485)
T ss_pred ccccCceeeeeeeEEEEEcCCcEE
Confidence 6778877777666 788864
No 5
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=99.98 E-value=5.6e-31 Score=251.40 Aligned_cols=193 Identities=26% Similarity=0.371 Sum_probs=156.0
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCC-CCCC--CCCCCCCCCcceEEEECCEEeccccCCCCCCCCeEEEecccCchhHH
Q 022235 89 WPSRKDEPFRFTDTSMIKSSQIQPIT-RPSS--SLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIM 165 (300)
Q Consensus 89 ~Ptrk~E~WryTdL~~l~~~~~~~~~-~~~~--~~~~~~~~~~~~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~~~~~ 165 (300)
||++|+|+||||||+.+....+.+.. .+.. ....+..+..+ +||+||.+...++....++.|+.+..+.+..
T Consensus 1 ~P~~~~e~wkyt~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-lv~~~G~~~~~l~~~~~~~~~~~~~~l~~~~---- 75 (366)
T TIGR01981 1 LPPRRIEEWRYTDLENLLNESFQPRAAVPQEVQAAGLPLTKSPR-LVFVDGVIVPDLSDALPLHPELLEDLLDALA---- 75 (366)
T ss_pred CCCCcccCccCCCHHHhhhcccCcccCCCccccccccccCCcee-EEEECCEEecChhhhhccCcceEEeehhccc----
Confidence 69999999999999998876664321 1111 11222224456 9999999999888765567788877765321
Q ss_pred HHhhccccccccCcHhHHHhhccCCceEEEEECCCceecccEEEEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEE
Q 022235 166 KRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIE 245 (300)
Q Consensus 166 ~~~~~~~~~~~~~d~f~aLN~A~~~dG~~I~Vp~g~~le~PI~i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE 245 (300)
.. ..+|+|++||.|++++|++||||+|+++++||+|.|+.++... ...++|++|++|+||+++|||
T Consensus 76 -------~~-~~~~~~~aln~a~~~~G~~i~v~~~~~~~~Pi~i~~~~~~~~~------~~~~~~~~i~v~~~s~~~iie 141 (366)
T TIGR01981 76 -------VL-SDEDRFLALNAALFNDGTVLYVPKGVEVEEPIEIKFIGVGGEK------NFVHPRLLIIVEKGSKITVIE 141 (366)
T ss_pred -------Cc-CCccHHHHHHHHHhCCeEEEEECCCCCcCCCEEEEEEEcCCCc------cceeeEEEEEECCCCEEEEEE
Confidence 11 2478999999999999999999999999999999999876321 367999999999999999999
Q ss_pred EeecCCC-CcceeeeeEEEEEEcCCCEEEEEEEeecCCCcEEEeeeEEEEcCCCCC
Q 022235 246 EFVGKEG-NDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQLVVMSL 300 (300)
Q Consensus 246 ~~~~~~~-~~~~~~n~v~EI~v~~~A~v~~~~iQ~~~~~s~h~~~~~v~q~~dS~l 300 (300)
+|.+... ...+|+|.++||++++||+|+|+++|+|+.+++|+.++++.|+++|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~ei~~~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~a~~ 197 (366)
T TIGR01981 142 RFETISLNSGKAFTNSVVEITVGANASVIFVKVQFFSKNSTHFSNHRAFIGRDATL 197 (366)
T ss_pred EecCCCCCCcccEEEEEEEEEECCCCEEEEEEEEcCCCCcEEEEEeEEEEcCCCEE
Confidence 9987531 234799999999999999999999999999999999999999999874
No 6
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-26 Score=220.81 Aligned_cols=220 Identities=21% Similarity=0.260 Sum_probs=171.4
Q ss_pred CChhHHHHHHHHHHHhhcCCCC---CCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcceEEEECCEEeccccCC
Q 022235 69 QPLPLQKLRDSSSQTLLSTPWP---SRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNL 145 (300)
Q Consensus 69 ~p~~L~~~R~~a~e~~~~~g~P---trk~E~WryTdL~~l~~~~~~~~~~~~~~~~~~~~~~~~~lvfvnG~~~~~~s~~ 145 (300)
+|+|+.++|.++++.+.++++| ++|.+.|+||++..+........ +.....+++.+. . .+..+..........
T Consensus 11 ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~-~-~~~~~~~~~~~~~~~ 86 (412)
T COG0719 11 EPEWMLALRLKALRASPDLEMPEVPTRRDELWELDFLDRLYYLAPGEA--SFKRLGIPDAEE-V-LAQCDSVVVYHAVSG 86 (412)
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCcccccccCcChhHhhhccCCCcc--cccccCCCchhc-c-ceeecceeehhhcch
Confidence 7999999999999999999998 35679999999988776432211 111122222221 1 344454433322233
Q ss_pred CCCCCCeEEEecccCchhHHHHhhcc-ccccccCcHhHHHhhccCCceEEEEECCCceecccEEEEEEEcCCCccCCCCC
Q 022235 146 SNLPDGVYVGSLLGVSDGIMKRVSDF-ISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKL 224 (300)
Q Consensus 146 ~~lp~GV~v~~l~~a~~~~~~~~~~~-~~~~~~~d~f~aLN~A~~~dG~~I~Vp~g~~le~PI~i~~~~~~~~~~~~~~~ 224 (300)
...++|++++++-...++..++|++. ... ..+++|++||+|++++|+|||||+|++++.||+++|+..++..
T Consensus 87 ~~~~~gv~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~aL~~a~~~~g~fiyVp~g~~~~~Pi~~~~~~~~~~~------ 159 (412)
T COG0719 87 ELAPEGVIVEDILKEHPDLVKKYFGKGVVP-DDDDKFAALNAALFSDGTFIYVPKGVEVPTPIQLYFIINGENT------ 159 (412)
T ss_pred hhhhCccEEeechhhhhHHHHHhCCCcccC-CCcceeeeeeeeEEcCcEEEEeCCCceeccceEEEEEecCCCc------
Confidence 33478999999943447888899886 444 3689999999999999999999999999999999999875431
Q ss_pred cceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEEEEEEEeecCCCcEEEeeeEEEEcCCCCC
Q 022235 225 PISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQLVVMSL 300 (300)
Q Consensus 225 ~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v~~~~iQ~~~~~s~h~~~~~v~q~~dS~l 300 (300)
..++.|++|++|+||++++||+|.+. .....+++.++||++++||+|+|+.+|+|+....|+....+..++++++
T Consensus 160 ~~q~~~~lIiveega~v~~ie~~~~p-~~~~~~h~~vvei~v~~nA~v~~~~vqn~~~~~~~~~~~~~~~~~~a~~ 234 (412)
T COG0719 160 GVQFERTLIIVEEGAEITVIEGCSAP-VGSGSLHNGVVEIFVGENASLTYTTVQNWSPVYNHLTKRAAVEEEDATV 234 (412)
T ss_pred cceeeeEEEEECCCCEEEEEccccCC-CCCCcceeeEEEEEEcCCCEEEEEEecccccceeeeeeeeeeeccCcEE
Confidence 45999999999999999999999764 3334569999999999999999999999999999999999999888863
No 7
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=99.02 E-value=2.4e-09 Score=96.20 Aligned_cols=75 Identities=31% Similarity=0.411 Sum_probs=61.1
Q ss_pred cceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEEEEEEEeecCCCcEEEeeeEEEEcCCCCC
Q 022235 225 PISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQLVVMSL 300 (300)
Q Consensus 225 ~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v~~~~iQ~~~~~s~h~~~~~v~q~~dS~l 300 (300)
..+++|++|++|+||+++|+|.+.+. ....++++.++||++++||+|+|+.+|+|+.++.++..+.+.++++|++
T Consensus 3 ~~~~~~~~I~v~~~s~~~i~~~~~~~-~~~~~~~~~~~~i~v~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 77 (229)
T PF01458_consen 3 GAQFPRNLIIVEEGSEVTIIESYSSN-SGESSLHNGVIEIYVGENARLKYVSVQNWGENSIHFSNTRVILGENASL 77 (229)
T ss_dssp EEEEEEEEEEE-TT-EEEEEEEEEET-TSSEEEEEEEEEEEE-TT-EEEEEEEEE--TCEEEEEEEEEEE-TT-EE
T ss_pred ccEeeeEEEEECCCCEEEEEEEeCCC-CCCceEEEEEEEEEECCCcEEEEEEEecCCCcEEEEEEEEEEEcCceEE
Confidence 47899999999999999999996664 4467999999999999999999999999999999999999999999864
No 8
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=95.70 E-value=0.42 Score=42.72 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=54.7
Q ss_pred eEEEEECCCceecccEEEEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCE
Q 022235 192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK 271 (300)
Q Consensus 192 G~~I~Vp~g~~le~PI~i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~ 271 (300)
=++|.|.+|.++.- ...+...... ....+..+-|.+++||+++++.-.... ...+....+.+.++++|+
T Consensus 8 ~~~I~v~~~s~~~i--~~~~~~~~~~------~~~~~~~~~i~v~~~a~l~~~~~~~~~---~~~~~~~~~~~~~~~~a~ 76 (229)
T PF01458_consen 8 RNLIIVEEGSEVTI--IESYSSNSGE------SSLHNGVIEIYVGENARLKYVSVQNWG---ENSIHFSNTRVILGENAS 76 (229)
T ss_dssp EEEEEE-TT-EEEE--EEEEEETTSS------EEEEEEEEEEEE-TT-EEEEEEEEE-----TCEEEEEEEEEEE-TT-E
T ss_pred eEEEEECCCCEEEE--EEEeCCCCCC------ceEEEEEEEEEECCCcEEEEEEEecCC---CcEEEEEEEEEEEcCceE
Confidence 36788999988652 2222222222 256777888999999999999865542 235577888899999999
Q ss_pred EEEEEEeecCCCcEEEeeeEEEE-cCCCC
Q 022235 272 VRHSYLQNQSLNAAHIKWTAVRQ-LVVMS 299 (300)
Q Consensus 272 v~~~~iQ~~~~~s~h~~~~~v~q-~~dS~ 299 (300)
++++.+..-+.. .+ ....+.+ +++|+
T Consensus 77 ~~~~~~~~g~~~-~~-~~~~~~l~G~~s~ 103 (229)
T PF01458_consen 77 LNWVSVSLGGKM-SR-NRIEIELNGEGSS 103 (229)
T ss_dssp EEEEEEES--SE-EE-EEEEEEE-STT-E
T ss_pred EEEEEEEeCCee-EE-EEEEEEEcCCCCE
Confidence 999999554443 33 3344444 66553
No 9
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional
Probab=91.26 E-value=6.1 Score=38.86 Aligned_cols=86 Identities=8% Similarity=0.132 Sum_probs=59.7
Q ss_pred CceEEEEECCCceecccEEEEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCC
Q 022235 190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKG 269 (300)
Q Consensus 190 ~dG~~I~Vp~g~~le~PI~i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~ 269 (300)
..-.+|.+.+|.++. |...|...++. ....+..+-|.+|+||+++++.-.... ...++-....+.++++
T Consensus 171 ~~r~lI~~e~~a~~t--iie~~~s~~~~------~~~~n~v~ei~~~~~A~l~~~~lq~~~---~~~~~~~~~~~~~~~~ 239 (424)
T PRK10948 171 HYRHHLDLAEGAEAT--VIEHFVSLNEA------RHFTGARLTMNVADNAHLNHIKLAFEN---PSSYHFAHNDLLLGRD 239 (424)
T ss_pred cceEEEEECCCCEEE--EEEEeecCCCC------ceeEeeeEEEEECCCCEEEEEEEEccC---CCcEEEEEeEEEEcCC
Confidence 456789999998875 33334332222 145678889999999999998765532 2344556678889999
Q ss_pred CEEEEEEEeecCCCcEE
Q 022235 270 GKVRHSYLQNQSLNAAH 286 (300)
Q Consensus 270 A~v~~~~iQ~~~~~s~h 286 (300)
|++++..+..-+.-+.+
T Consensus 240 s~~~~~~~~~G~~~~r~ 256 (424)
T PRK10948 240 ARAFSHSFLLGAAVLRH 256 (424)
T ss_pred CEEEEEEEEeCCceEEE
Confidence 99999998875554443
No 10
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=88.69 E-value=10 Score=36.43 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=64.1
Q ss_pred CceEEEEECCCceecccEEEEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCC
Q 022235 190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKG 269 (300)
Q Consensus 190 ~dG~~I~Vp~g~~le~PI~i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~ 269 (300)
..=.+|.|.+|.++. |.-.|....... .....+..+-|.+|+||+++++.-.... ...++-.-+.+.++++
T Consensus 124 ~~~~~i~v~~~s~~~--iie~~~~~~~~~----~~~~~~~~~ei~~~~~A~l~~~~iq~~~---~~~~~~~~~~~~~~~~ 194 (366)
T TIGR01981 124 HPRLLIIVEKGSKIT--VIERFETISLNS----GKAFTNSVVEITVGANASVIFVKVQFFS---KNSTHFSNHRAFIGRD 194 (366)
T ss_pred eeEEEEEECCCCEEE--EEEEecCCCCCC----cccEEEEEEEEEECCCCEEEEEEEEcCC---CCcEEEEEeEEEEcCC
Confidence 346788899998875 222222211110 0135677888999999999998765542 2344556788999999
Q ss_pred CEEEEEEEeecCCCcEEEeeeEEEE-cCCC
Q 022235 270 GKVRHSYLQNQSLNAAHIKWTAVRQ-LVVM 298 (300)
Q Consensus 270 A~v~~~~iQ~~~~~s~h~~~~~v~q-~~dS 298 (300)
|+++++.+...+.-+.+ ...+.+ |++|
T Consensus 195 a~~~~~~~~~gg~~~r~--~~~~~l~G~~a 222 (366)
T TIGR01981 195 ATLRLAVVNLGGKLSRH--NFDVDLEGEGS 222 (366)
T ss_pred CEEEEEEEEcCCccEEE--eeeEEEEcCCc
Confidence 99999999987665543 334444 4544
No 11
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=85.73 E-value=23 Score=35.16 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=55.7
Q ss_pred ceEEEEECCCceecccEEEEEEEc-CCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCC
Q 022235 191 DLGVIYVPAGCKVENPIYLKYLSV-EGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKG 269 (300)
Q Consensus 191 dG~~I~Vp~g~~le~PI~i~~~~~-~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~ 269 (300)
.=..|.+.+|.++.- .-.|... ... ....+.-+-|++++||+++++.-+.-. ...++-....+.++++
T Consensus 205 ~r~lIi~ee~s~~~i--ie~~~s~~~~~------~~~~~~v~Ei~v~~~A~v~~~~iq~~~---~~~~~~~~~~~~~~~~ 273 (448)
T TIGR01980 205 EHTLIIADEGASVHY--IEGCSAPIYST------NSLHAAVVELIVKEDARVRYSTVQNWS---KNVYNLVTKRALVEEN 273 (448)
T ss_pred eeEEEEECCCCEEEE--EEeccccCCCc------cceEEEEEEEEEcCCCEEEEEEEeecC---CCeEEEEEEEEEEcCC
Confidence 456777888888652 1112211 111 145677888899999999988776542 2345556677888899
Q ss_pred CEEEEEEEeecCCCcEE
Q 022235 270 GKVRHSYLQNQSLNAAH 286 (300)
Q Consensus 270 A~v~~~~iQ~~~~~s~h 286 (300)
|++++..+..-+.-+.+
T Consensus 274 a~~~~~~~~lG~~~s~~ 290 (448)
T TIGR01980 274 GTMEWVSGSIGSKITMK 290 (448)
T ss_pred CEEEEEEEEecCceEEE
Confidence 99999888876555553
No 12
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=83.20 E-value=14 Score=32.65 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=31.6
Q ss_pred eeeeEEEEeCCCCeEEEEEEeecC--CCCcceeeeeEEEEEEcCCCEEEEEEEeec-CCCcEEEeeeEEEEcCCCC
Q 022235 227 SNPRVVVLVEEGGEVGIIEEFVGK--EGNDCYWANSVLEVVIGKGGKVRHSYLQNQ-SLNAAHIKWTAVRQLVVMS 299 (300)
Q Consensus 227 ~~~R~lI~veegA~atIIE~~~~~--~~~~~~~~n~v~EI~v~~~A~v~~~~iQ~~-~~~s~h~~~~~v~q~~dS~ 299 (300)
-..++-|.+++||++.|.-.=... ...........++|.|++||.|+|.==..- -.++.+...+.+++..+|+
T Consensus 15 D~l~~~i~v~~ga~~~ltTqaatkvy~~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~A~~~q~~~v~l~~~A~ 90 (209)
T PF01774_consen 15 DRLRIDITVGPGARLLLTTQAATKVYRMRGGRPARQRIRITVEEGAYLEYLPDPTIPFAGARFRQRTRVDLAPGAS 90 (209)
T ss_dssp -EEEEEEEE-TT-EEEEE----EEE---TTS--EEEEEEEEE-TT-EEEE----EEE-TT-EEEEEEEEEE-TT-E
T ss_pred CEEEEEEEECCCCEEEEechhhhhhcCCCCCCcEEEEEEEEECCCCEEEEcCCCCEeeCCCEEEEEEEEEECCCCE
Confidence 345666777777777666431110 001122466677777777777777543333 2345556666777766665
No 13
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=81.71 E-value=11 Score=37.81 Aligned_cols=75 Identities=9% Similarity=-0.064 Sum_probs=54.9
Q ss_pred ceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEEEEEEEee---cCCCcEEEeeeEEEEcCCCCC
Q 022235 226 ISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQN---QSLNAAHIKWTAVRQLVVMSL 300 (300)
Q Consensus 226 ~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v~~~~iQ~---~~~~s~h~~~~~v~q~~dS~l 300 (300)
..+.=.+|.+.+|.++.+-..+..............+-|++++||+++++.-.. .....+|-+-+.+.++++|+|
T Consensus 192 ~~~~G~fi~Vp~gv~~~~pi~~~~~~~~~~~~~~~r~lIi~ee~S~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l 269 (486)
T PRK11814 192 VFSDGSFVYIPKGVRCPMELSTYFRINAANTGQFERTLIIADEGSYVSYLEGCTAPMRDENQLHAAVVELVALDDAEI 269 (486)
T ss_pred hcCCeEEEEECCCCceeEEEEEEEeecCCCcceeeEEEEEECCCCEEEEEEEecCCCCCccceeeEEEEEEECCCCEE
Confidence 345568899999998875544333211122356799999999999999987654 235678889999999999875
No 14
>CHL00085 ycf24 putative ABC transporter
Probab=77.29 E-value=18 Score=36.33 Aligned_cols=74 Identities=7% Similarity=-0.116 Sum_probs=54.4
Q ss_pred eeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEEEEEEEee---cCCCcEEEeeeEEEEcCCCCC
Q 022235 227 SNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQN---QSLNAAHIKWTAVRQLVVMSL 300 (300)
Q Consensus 227 ~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v~~~~iQ~---~~~~s~h~~~~~v~q~~dS~l 300 (300)
.+.=.+|.+.+|.++.+-..+....+......+..+-|++++||+++++.-.. ......|.+-+.+.++++|+|
T Consensus 192 ~~~G~fi~Vp~gv~~~~pl~~~~~~~~~~~~~~~r~lIi~eega~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l 268 (485)
T CHL00085 192 FSDGSFCYIPKDTKCPLELSTYFRINNEESGQFERTLIIAEENSYVSYLEGCTAPQYDTNQLHAAVVELIALENAEI 268 (485)
T ss_pred cCCeEEEEECCCCcceEEEEEEEeecCCccceeeeEEEEECCCCEEEEEEEeccCCCCccceEEEEEEEEECCCCEE
Confidence 44568899999988776555443212122356789999999999999997654 245678999999999999875
No 15
>COG0829 UreH Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]
Probab=75.48 E-value=34 Score=31.60 Aligned_cols=108 Identities=10% Similarity=0.018 Sum_probs=65.0
Q ss_pred ccCCceEEEEECCCceecccEEEEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCC-CCcceeeeeEEEEE
Q 022235 187 MGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKE-GNDCYWANSVLEVV 265 (300)
Q Consensus 187 A~~~dG~~I~Vp~g~~le~PI~i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~-~~~~~~~n~v~EI~ 265 (300)
.+...-+-|.-|.-.. +.+.+++-+..+++- ..--....-|.+|+|+++.|.-.=...- ....++...-++|.
T Consensus 26 ~~~~~plkV~~p~y~~-~~~~~~~li~~~GGv-----~gGD~l~~di~lg~~a~~~iTTQsatKvYrs~~g~A~Q~~~i~ 99 (269)
T COG0829 26 LFQTGPLKVQRPFYPD-EGLCEAMLIHPSGGV-----VGGDRLEIDIELGDNAKALITTQSATKVYRSPGGQATQTTNIT 99 (269)
T ss_pred hhccCCeEEEccCcCC-CCCeEEEEEeCCCCc-----cccceEEEEEEECCCceEEEEccccceeEeCCCCceEEEEEEE
Confidence 3344444555554433 355555555554321 1123456778899999998875421110 01124578889999
Q ss_pred EcCCCEEEEEEEeecCC-CcEEEeeeEEEEcCCCCC
Q 022235 266 IGKGGKVRHSYLQNQSL-NAAHIKWTAVRQLVVMSL 300 (300)
Q Consensus 266 v~~~A~v~~~~iQ~~~~-~s~h~~~~~v~q~~dS~l 300 (300)
|++||.|+|.-=..--. ++.-..++.+.++.+|+|
T Consensus 100 vg~nA~LewlPq~tI~F~~a~f~q~~~~~L~~sA~l 135 (269)
T COG0829 100 VGENARLEWLPQETIPFEGARFKQHTRFELASSATL 135 (269)
T ss_pred ECCCCEEEecCCcceecCCceeEEEEEEEeCCCcee
Confidence 99999999975444322 344456788999888864
No 16
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
Probab=67.66 E-value=65 Score=31.53 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=55.4
Q ss_pred EEEEECCCceecccEEEEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEE
Q 022235 193 GVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKV 272 (300)
Q Consensus 193 ~~I~Vp~g~~le~PI~i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v 272 (300)
..|-|.+|.++. .|.+...... .....+..+-|++++||+++++..+.-. ..+.+.....+..+++|.+
T Consensus 166 ~lIiveega~v~---~ie~~~~p~~-----~~~~h~~vvei~v~~nA~v~~~~vqn~~---~~~~~~~~~~~~~~~~a~~ 234 (412)
T COG0719 166 TLIIVEEGAEIT---VIEGCSAPVG-----SGSLHNGVVEIFVGENASLTYTTVQNWS---PVYNHLTKRAAVEEEDATV 234 (412)
T ss_pred EEEEECCCCEEE---EEccccCCCC-----CCcceeeEEEEEEcCCCEEEEEEecccc---cceeeeeeeeeeeccCcEE
Confidence 667788887542 1222211011 0123567888999999999998775442 1344555566778899999
Q ss_pred EEEEEeecCCCcEEEee
Q 022235 273 RHSYLQNQSLNAAHIKW 289 (300)
Q Consensus 273 ~~~~iQ~~~~~s~h~~~ 289 (300)
+++.+..-+..+.+.-.
T Consensus 235 ~~~~~~~G~~~t~~~~~ 251 (412)
T COG0719 235 RWTQVTLGSKVTRKYPS 251 (412)
T ss_pred EEEEEecCCceEEEece
Confidence 99999887776665443
No 17
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=45.27 E-value=20 Score=27.53 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=27.1
Q ss_pred ChhHHHHHHHHHHHhhcCCCCCCCCCCCC-CC
Q 022235 70 PLPLQKLRDSSSQTLLSTPWPSRKDEPFR-FT 100 (300)
Q Consensus 70 p~~L~~~R~~a~e~~~~~g~Ptrk~E~Wr-yT 100 (300)
+.-+.++|+++-.....+|++....|.|| |+
T Consensus 57 ~~~f~~l~~Aa~~T~~~MGi~~~~~~~fR~y~ 88 (90)
T PF06069_consen 57 PDNFGDLRKAADRTQKRMGIDQPNGEIFRNYK 88 (90)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCccHHHhcCC
Confidence 45788999999999999999888889998 54
No 18
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=27.07 E-value=16 Score=25.50 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCC
Q 022235 90 PSRKDEPFRFTDT 102 (300)
Q Consensus 90 Ptrk~E~WryTdL 102 (300)
|=-|+|+|||.+.
T Consensus 4 PW~RneaWRy~~~ 16 (57)
T PF08122_consen 4 PWARNEAWRYHPQ 16 (57)
T ss_pred hHhhhHHHhCCcc
Confidence 3358899999543
No 19
>PF11154 DUF2934: Protein of unknown function (DUF2934); InterPro: IPR021327 This bacterial family of proteins has no known function.
Probab=22.53 E-value=51 Score=21.16 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCC-CCCC
Q 022235 73 LQKLRDSSSQTLLSTPWPSRK-DEPF 97 (300)
Q Consensus 73 L~~~R~~a~e~~~~~g~Ptrk-~E~W 97 (300)
-...|..|+..+++-|.|..+ .+.|
T Consensus 5 e~~Ir~rAY~lwe~~G~p~G~~~~~W 30 (40)
T PF11154_consen 5 EERIRERAYELWEERGRPEGRDEEDW 30 (40)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 356899999999999999755 4444
Done!