Query 022235
Match_columns 300
No_of_seqs 163 out of 1200
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vh4_A SUFD protein; structura 100.0 2.6E-37 8.8E-42 299.4 22.4 214 71-300 25-243 (435)
2 4dn7_A ABC transporter, ATP-bi 99.9 3.4E-26 1.1E-30 220.5 18.6 158 130-299 92-251 (429)
3 1vh4_A SUFD protein; structura 93.3 2 6.7E-05 41.0 14.8 94 192-298 174-268 (435)
4 4dn7_A ABC transporter, ATP-bi 87.8 8 0.00027 36.7 13.2 81 193-283 183-263 (429)
5 3sf5_B Urease accessory protei 69.6 44 0.0015 29.4 10.9 72 228-299 62-135 (265)
6 2ker_A Parvulustat, alpha-amyl 10.8 31 0.0011 24.4 -1.3 11 94-104 13-23 (78)
7 1slu_A Ecotin; serine protease 9.2 1.3E+02 0.0045 23.9 1.7 14 191-204 113-126 (142)
8 2y6t_E Ecotin, chymotrypsinoge 8.6 1.4E+02 0.0048 23.9 1.7 14 191-204 119-132 (148)
9 4h63_K Mediator of RNA polymer 8.6 2E+02 0.0068 21.1 2.3 36 47-89 32-67 (112)
10 2jn4_A Hypothetical protein FI 8.6 1.7E+02 0.0059 21.2 1.9 18 190-208 30-47 (87)
No 1
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=100.00 E-value=2.6e-37 Score=299.39 Aligned_cols=214 Identities=18% Similarity=0.198 Sum_probs=177.3
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccccCCCCCCCCCC-----CCCCCCCCCcceEEEECCEEeccccCC
Q 022235 71 LPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSS-----SLDVSTDAQFPSLVLIDGFIQNSALNL 145 (300)
Q Consensus 71 ~~L~~~R~~a~e~~~~~g~Ptrk~E~WryTdL~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~lvfvnG~~~~~~s~~ 145 (300)
.||.++|++||+.|.++|||++|.|+||||||+.+....+.+...... ...++ .++.+ +||+||.+.+++++
T Consensus 25 ~~l~~~R~~a~~~~~~~~~P~~~~e~w~~t~l~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~-~v~v~g~~~~~ls~- 101 (435)
T 1vh4_A 25 TKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALT-LDSVR-LVFVDGRYVPALSD- 101 (435)
T ss_dssp -CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCC-CCSEE-EEEETTEECGGGSC-
T ss_pred chhHHHHHHHHHHHHhCCCCCCCccccccCchHHhhcccccccccccChhHHhhhcCc-cCceE-EEEECCEEeeeccc-
Confidence 478899999999999999999999999999999998876543321110 01123 35667 99999999988765
Q ss_pred CCCCCCeEEEecccCchhHHHHhhccccccccCcHhHHHhhccCCceEEEEECCCceecccEEEEEEEcCCCccCCCCCc
Q 022235 146 SNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLP 225 (300)
Q Consensus 146 ~~lp~GV~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLN~A~~~dG~~I~Vp~g~~le~PI~i~~~~~~~~~~~~~~~~ 225 (300)
+.+|+||+++++.+ ++|+++... .|+|++||+|++++|+|||||+|+++++||+++|+.++.+. ....
T Consensus 102 ~~~~~Gv~~~~~~~------~~~~~~~~~---~~~f~aln~a~~~~G~~i~Vp~g~~~~~Pi~l~~~~~~~~~---~~~~ 169 (435)
T 1vh4_A 102 ATEGSGYEVSINDD------RQGLPDAIQ---AEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAG---EEVN 169 (435)
T ss_dssp CCTTSSCEEEEESC------CTTCCCCSS---CCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSS---SCEE
T ss_pred cccCCCeEEEecch------hhhhhcccC---chHHHHHHHHhcCCcEEEEECCCCEecccEEEEEEecCCcc---cccc
Confidence 23689999999976 467776443 49999999999999999999999999999999888664320 0013
Q ss_pred ceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEEEEEEEeecCCCcEEEeeeEEEEcCCCCC
Q 022235 226 ISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQLVVMSL 300 (300)
Q Consensus 226 ~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v~~~~iQ~~~~~s~h~~~~~v~q~~dS~l 300 (300)
.+++|++|++|+||+++|||.|.+.. ...+++|.|+||++++||+|+|+.+|+|+.+++|+.++++.++++|++
T Consensus 170 ~~~~r~lIi~eegs~v~iie~~~~~~-~~~~~~~~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~~~~~~~a~~ 243 (435)
T 1vh4_A 170 TAHYRHHLDLAEGAEATVIEHFVSLN-DARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATA 243 (435)
T ss_dssp EEEEEEEEEECTTCEEEEEEEEEESS-SSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEE
T ss_pred eeeeEEEEEECCCCEEEEEEEeccCC-cccceeeeEEEEEECCCCEEEEEEEEecCCCeEEEEEEEEEECCCCEE
Confidence 68999999999999999999999863 356899999999999999999999999999999999999999999864
No 2
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=99.94 E-value=3.4e-26 Score=220.51 Aligned_cols=158 Identities=21% Similarity=0.185 Sum_probs=138.0
Q ss_pred eEEEECCEEeccccCCCCCCCCeEEEecccCch--hHHHHhhccccccccCcHhHHHhhccCCceEEEEECCCceecccE
Q 022235 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSD--GIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPI 207 (300)
Q Consensus 130 ~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~~--~~~~~~~~~~~~~~~~d~f~aLN~A~~~dG~~I~Vp~g~~le~PI 207 (300)
+.+++|........ .++||+++++++|.. +++++|+++.... .+|+|++||+|++++|+|||||+|+++++||
T Consensus 92 ~~~q~d~~~v~~~~----~~~GV~~~~l~~Al~~~~lv~~y~~~~v~~-~~d~f~Aln~A~~~~G~fI~Vp~gv~~~~Pi 166 (429)
T 4dn7_A 92 SFLVLDNAVSHSTL----KDKNVELMSTHKAMEKYEWLKDYSWKLVQV-DADKYTAKTYLEDADGYFIRVPAGKKTSMPV 166 (429)
T ss_dssp EEEEETTEEEEEEE----SSSSSEEEEHHHHHHHCGGGGGTTTTSSCT-TSSHHHHHHHHTTCBCEEEEECTTCBCSSCE
T ss_pred eEEEEcCceEEEee----cCCCEEEEcHHHHhhhhHHHHHHHhccCCC-CcCHHHHHHHhhCCCcEEEEECCCcEEEEEE
Confidence 37889987765422 368999999999874 4578899876653 5899999999999999999999999999999
Q ss_pred EEEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEEEEEEEeecCCCcEEE
Q 022235 208 YLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI 287 (300)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v~~~~iQ~~~~~s~h~ 287 (300)
+++|..++.+ ..+++|++|++|+||+++|||.|.+......+++|.++||++++||+|+|+.+|+|+.+++|+
T Consensus 167 ~~~~~i~~~~-------~~~~~r~lIi~eegA~v~iie~c~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~vq~~~~~~~~~ 239 (429)
T 4dn7_A 167 QTCLMLGSKK-------AAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHNWAEQIGVR 239 (429)
T ss_dssp EEEEEECSSS-------EEEEEEEEEEECTTCEEEEEEEEEECTTCCEEEEEEEEEEEECTTCEEEEEEEECCCTEEEEE
T ss_pred EEEEEEcCCc-------cceeeeEEEEECCCCEEEEEEEecCCCCcccceEEEEEEEEECCCCEEEEEEEeecCCCcEEe
Confidence 9988776543 578999999999999999999999864334689999999999999999999999999999999
Q ss_pred eeeEEEEcCCCC
Q 022235 288 KWTAVRQLVVMS 299 (300)
Q Consensus 288 ~~~~v~q~~dS~ 299 (300)
.++++.++++|+
T Consensus 240 ~~~~~~~~~~a~ 251 (429)
T 4dn7_A 240 PRTVVSVEEGGT 251 (429)
T ss_dssp EEEEEEECTTCE
T ss_pred cceeEEECCCcE
Confidence 999999999985
No 3
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=93.29 E-value=2 Score=41.00 Aligned_cols=94 Identities=7% Similarity=0.034 Sum_probs=62.4
Q ss_pred eEEEEECCCceecccEEEEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCE
Q 022235 192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK 271 (300)
Q Consensus 192 G~~I~Vp~g~~le~PI~i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~ 271 (300)
=..|.+.+|.++. +.-.|...+.. ....+..+-|++++||+++++.-+.-. . ..++...+.+.++++|+
T Consensus 174 r~lIi~eegs~v~--iie~~~~~~~~------~~~~~~v~ei~v~~~A~l~~~~vq~~~-~--~~~~~~~~~~~~~~~a~ 242 (435)
T 1vh4_A 174 RHHLDLAEGAEAT--VIEHFVSLNDA------RHFTGARFTINVAANAHLQHIKLAFEN-P--LSHHFAHNDLLLAEDAT 242 (435)
T ss_dssp EEEEEECTTCEEE--EEEEEEESSSS------CEEEEEEEEEEECTTCEEEEEEEECCC-T--TCEEEEEEEEEECTTCE
T ss_pred EEEEEECCCCEEE--EEEEeccCCcc------cceeeeEEEEEECCCCEEEEEEEEecC-C--CeEEEEEEEEEECCCCE
Confidence 3568899998865 22123332221 145666788999999999999876532 2 34666778899999999
Q ss_pred EEEEEEeecCCCcEEEeeeEEE-EcCCC
Q 022235 272 VRHSYLQNQSLNAAHIKWTAVR-QLVVM 298 (300)
Q Consensus 272 v~~~~iQ~~~~~s~h~~~~~v~-q~~dS 298 (300)
+++..+..-+.-+++- ..+. .|++|
T Consensus 243 ~~~~~~~~G~~~~~~~--~~~~L~G~~a 268 (435)
T 1vh4_A 243 AFSHSFLLGGAVLRHN--TSTQLNGENS 268 (435)
T ss_dssp EEEEEEECCCSEEEEE--EEEEECSTTC
T ss_pred EEEEEEEECCceEEEe--eEEEEEcCCC
Confidence 9999998766544443 2333 35554
No 4
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=87.78 E-value=8 Score=36.73 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=53.0
Q ss_pred EEEEECCCceecccEEEEEEEcCCCccCCCCCcceeeeEEEEeCCCCeEEEEEEeecCCCCcceeeeeEEEEEEcCCCEE
Q 022235 193 GVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKV 272 (300)
Q Consensus 193 ~~I~Vp~g~~le~PI~i~~~~~~~~~~~~~~~~~~~~R~lI~veegA~atIIE~~~~~~~~~~~~~n~v~EI~v~~~A~v 272 (300)
..|.+.+|.++.- ...+....... ....+.-+-|++++||+++++.-+.-. ...++...+.+.++++|++
T Consensus 183 ~lIi~eegA~v~i--ie~c~~~~~~~-----~~lh~~v~Ei~v~~~A~l~~~~vq~~~---~~~~~~~~~~~~~~~~a~~ 252 (429)
T 4dn7_A 183 NIIIVEEGATLDI--ITGCTTKKGVE-----EGLHLGISEMYIKKGGTLNFTMIHNWA---EQIGVRPRTVVSVEEGGTY 252 (429)
T ss_dssp EEEEECTTCEEEE--EEEEEECTTCC-----EEEEEEEEEEEECTTCEEEEEEEECCC---TEEEEEEEEEEEECTTCEE
T ss_pred EEEEECCCCEEEE--EEEecCCCCcc-----cceEEEEEEEEECCCCEEEEEEEeecC---CCcEEecceeEEECCCcEE
Confidence 5778899988652 12222222110 134456778999999999998876532 2355667888889999998
Q ss_pred EEEEEeecCCC
Q 022235 273 RHSYLQNQSLN 283 (300)
Q Consensus 273 ~~~~iQ~~~~~ 283 (300)
....++..+..
T Consensus 253 ~~~~v~~~g~~ 263 (429)
T 4dn7_A 253 VSNYICLKPVR 263 (429)
T ss_dssp EEEEEECSCCS
T ss_pred EEEEEEecCce
Confidence 77777665443
No 5
>3sf5_B Urease accessory protein UREH; UREF, chaperone; 2.50A {Helicobacter pylori}
Probab=69.55 E-value=44 Score=29.37 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=40.6
Q ss_pred eeeEEEEeCCCCeEEEEEEeecCC-CCcceeeeeEEEEEEcCCCEEEEEEEeec-CCCcEEEeeeEEEEcCCCC
Q 022235 228 NPRVVVLVEEGGEVGIIEEFVGKE-GNDCYWANSVLEVVIGKGGKVRHSYLQNQ-SLNAAHIKWTAVRQLVVMS 299 (300)
Q Consensus 228 ~~R~lI~veegA~atIIE~~~~~~-~~~~~~~n~v~EI~v~~~A~v~~~~iQ~~-~~~s~h~~~~~v~q~~dS~ 299 (300)
..++-|.+++||++.|...=...- ..........+++.|++||.|+|.=-..- -.++.+...+.++++.+|+
T Consensus 62 ~l~i~i~v~~ga~~~ltTqaatkvy~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~a~~~~~~~v~L~~~A~ 135 (265)
T 3sf5_B 62 AQDVQLNIGPNCKLRITSQSFEKIHNTEDGFASRDMHIVVGENAFLDFAPFPLIPFENAHFKGNTTISLRSSSQ 135 (265)
T ss_dssp EEEEEEEECTTCEEEEECCCCEEECCCTTSCEEEEEEEEECTTCEEEECCCCEEECTTCEEEEEEEEEECTTCE
T ss_pred EEEEEEEECCCCEEEEECcccceEEcCCCCcEEEEEEEEECCCCEEEecCCCcEecCCCEEEEEEEEEECCCCE
Confidence 446667777777777764311100 00112355667777777777777544333 2244555666777777665
No 6
>2ker_A Parvulustat, alpha-amylase inhibitor Z-2685; parvulustat (Z-2685), hydrolase inhibitor; NMR {Streptomyces parvulus}
Probab=10.84 E-value=31 Score=24.37 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=8.2
Q ss_pred CCCCCCCCCcc
Q 022235 94 DEPFRFTDTSM 104 (300)
Q Consensus 94 ~E~WryTdL~~ 104 (300)
.+.||||+..+
T Consensus 13 ~qsWRYT~v~N 23 (78)
T 2ker_A 13 FQSWRYTDVHN 23 (78)
T ss_dssp EECSSEEEEEC
T ss_pred ecceEEEeeeC
Confidence 46899998753
No 7
>1slu_A Ecotin; serine protease, inhibitor, complex, metal binding sites, PR engineering, protease-substrate interactions; 1.80A {Escherichia coli} SCOP: b.16.1.1 PDB: 1slv_A 1slw_A 1slx_A 1n8o_E 1azz_C* 1ecz_A* 1ecy_A 1xx9_C* 1p0s_E* 1id5_I* 1ezu_A 1xxf_C 1ezs_A 1xxd_C 1ifg_A 1fi8_C 1fi8_D
Probab=9.17 E-value=1.3e+02 Score=23.91 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=11.9
Q ss_pred ceEEEEECCCceec
Q 022235 191 DLGVIYVPAGCKVE 204 (300)
Q Consensus 191 dG~~I~Vp~g~~le 204 (300)
--++||+|+|+++.
T Consensus 113 lPiVVY~P~~~evr 126 (142)
T 1slu_A 113 LPIVVYTPDNVDVK 126 (142)
T ss_dssp SCEEEEEETTCEEE
T ss_pred CCEEEEcCCCcEEE
Confidence 37999999998864
No 8
>2y6t_E Ecotin, chymotrypsinogen A; hydrolase-inhibitor complex; 2.74A {Yersinia pseudotuberculosis}
Probab=8.63 E-value=1.4e+02 Score=23.89 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=11.9
Q ss_pred ceEEEEECCCceec
Q 022235 191 DLGVIYVPAGCKVE 204 (300)
Q Consensus 191 dG~~I~Vp~g~~le 204 (300)
--++||+|+|+++.
T Consensus 119 lPiVVY~P~~~evr 132 (148)
T 2y6t_E 119 LPIVVYVPQGVEVK 132 (148)
T ss_dssp SCEEEEEETTCEEE
T ss_pred CCEEEEcCCCcEEE
Confidence 37999999998864
No 9
>4h63_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=8.61 E-value=2e+02 Score=21.08 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 022235 47 PFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPW 89 (300)
Q Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~p~~L~~~R~~a~e~~~~~g~ 89 (300)
|.+|..+-.+.+.+. +...+.++|+.+.+.|.+-.|
T Consensus 32 PDILsSA~~CIEAI~-------~~~SiE~F~~~sr~F~~TVEF 67 (112)
T 4h63_K 32 PDILSSAGKCIEAIQ-------LNNSLEDFRKYSKEFLETVEF 67 (112)
T ss_dssp THHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHH-------HhccHHHHHHHHHHHHHHHHH
Confidence 677788888888876 344688999998888776543
No 10
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=8.56 E-value=1.7e+02 Score=21.17 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=14.0
Q ss_pred CceEEEEECCCceecccEE
Q 022235 190 PDLGVIYVPAGCKVENPIY 208 (300)
Q Consensus 190 ~dG~~I~Vp~g~~le~PI~ 208 (300)
.+|+.+||||- .+|.||.
T Consensus 30 ~~GLs~YVpKK-DLEE~VV 47 (87)
T 2jn4_A 30 ATGHSAYVAKK-DLEELIV 47 (87)
T ss_dssp SSCEEEEETTT-TEEEEEE
T ss_pred CCceEEEEeCC-cchhhee
Confidence 45799999995 7777765
Done!