Query 022236
Match_columns 300
No_of_seqs 117 out of 211
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06432 GPI2: Phosphatidylino 100.0 9.5E-88 2.1E-92 629.4 33.6 273 13-290 1-282 (282)
2 KOG3059 N-acetylglucosaminyltr 100.0 2E-80 4.3E-85 567.5 28.0 285 5-300 4-292 (292)
3 PF06667 PspB: Phage shock pro 55.0 17 0.00036 27.8 3.4 31 259-289 6-36 (75)
4 PRK09458 pspB phage shock prot 52.1 22 0.00048 27.2 3.6 31 260-290 7-37 (75)
5 COG5232 SEC62 Preprotein trans 52.1 21 0.00045 32.7 4.1 35 205-239 157-192 (259)
6 PF00948 Flavi_NS1: Flavivirus 49.8 6.4 0.00014 38.5 0.5 21 279-299 258-278 (356)
7 PF06453 LT-IIB: Type II heat- 39.6 5.8 0.00012 32.3 -1.3 11 21-31 74-84 (122)
8 PF15210 SFTA2: Surfactant-ass 35.0 22 0.00048 25.6 1.2 20 21-40 11-31 (59)
9 PF02285 COX8: Cytochrome oxid 34.2 42 0.00091 23.1 2.4 24 260-283 17-42 (44)
10 PF12497 ERbeta_N: Estrogen re 32.9 20 0.00043 29.4 0.8 14 281-294 84-98 (110)
11 PF15337 Vasculin: Vascular pr 31.6 22 0.00049 28.3 0.9 21 22-42 21-53 (97)
12 KOG2927 Membrane component of 31.1 92 0.002 30.7 5.1 25 206-230 197-222 (372)
13 cd00930 Cyt_c_Oxidase_VIII Cyt 29.0 78 0.0017 21.7 3.1 24 261-284 18-43 (43)
14 KOG1298 Squalene monooxygenase 29.0 5.2E+02 0.011 26.4 9.9 116 17-136 355-489 (509)
15 PF03208 PRA1: PRA1 family pro 26.5 3.7E+02 0.0081 22.3 10.5 36 5-43 3-38 (153)
16 TIGR02976 phageshock_pspB phag 25.4 99 0.0021 23.6 3.4 28 260-287 7-34 (75)
17 PRK09554 feoB ferrous iron tra 25.3 6.2E+02 0.013 27.5 10.6 25 195-222 654-678 (772)
18 KOG3142 Prenylated rab accepto 21.3 92 0.002 27.9 2.9 39 9-50 36-74 (187)
19 PRK09664 tryptophan permease T 20.7 8.6E+02 0.019 24.4 17.9 37 246-282 337-374 (415)
20 PF11744 ALMT: Aluminium activ 20.7 8.4E+02 0.018 24.4 9.9 68 126-205 26-93 (406)
21 PF09964 DUF2198: Uncharacteri 20.2 4E+02 0.0087 20.3 6.0 41 62-102 25-65 (74)
22 PF07843 DUF1634: Protein of u 20.1 3.2E+02 0.007 21.9 5.7 20 118-137 55-74 (105)
No 1
>PF06432 GPI2: Phosphatidylinositol N-acetylglucosaminyltransferase; InterPro: IPR009450 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively.; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=100.00 E-value=9.5e-88 Score=629.42 Aligned_cols=273 Identities=38% Similarity=0.643 Sum_probs=256.6
Q ss_pred ccccccCCCCCCCCCCCCChhhHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 022236 13 WRKVAYGGMQPGFEDNHTDESFLEQMVMNASVVKRDILKVMQDSVSISQYLCIVALVVLVWAYTLRSSLDENSLLLLDVS 92 (300)
Q Consensus 13 WkKvLy~~~kQ~yPDNYtD~sFL~~L~~N~~v~~~~y~~~v~~~~~v~q~is~v~lf~~~F~~l~~~~~~p~~l~~~~~~ 92 (300)
|||+|| +||||||||||++||||||+|.++++|+|++++.|+..|+||+|+|++|+++|.++++|+++|+.+.+.+.+
T Consensus 1 WkKvLy--~~Q~ypDNYtd~sFL~~l~~N~~~~~~~y~~~v~~~~~v~q~is~v~lf~~~F~~l~~~~~~~~~~~~~~~~ 78 (282)
T PF06432_consen 1 WKKVLY--EKQPYPDNYTDPSFLEELRRNVNVRKYSYWELVLDSLVVSQQISSVVLFLLVFVYLYEGRLSPRVLLWISTA 78 (282)
T ss_pred Cchhhc--cCCCCCCCCCCHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccc-------chhhHHHhHHHHHHHHHHHHHHhHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCC
Q 022236 93 LLGTGFLILVLTEGML-------SLNLLFHYILNISFFITGLYVLAPIYQTLTRSISSDSIWALTISLLVLHLFLHDYSG 165 (300)
Q Consensus 93 l~~~g~~~~~~~~~~~-------~~~~~~~~~ks~~i~~~~l~~LSPVLkTLT~s~SsDSIwals~~l~l~~l~~~DY~~ 165 (300)
++++||++|...+++. +...+.+++|+++++++++++|||||||||+|||||||||||++++++|+++|||++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~li~~~l~~LSPVLkTLT~s~SsDSI~Als~~l~l~~l~~~DY~~ 158 (282)
T PF06432_consen 79 LTLLGYILWDLLSSKENREGRSSRLSSRLRNLKSSLLIFFFLLLLSPVLKTLTKSTSSDSIWALSFWLFLLHLLFHDYSY 158 (282)
T ss_pred HHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHhccc
Confidence 9999999998765332 345688999999999999999999999999999999999999999999999999997
Q ss_pred CccCCCCCCCCCCcccchhhhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 022236 166 STIKAPGALQNPTLTSCISLNASVVASVFIASRLPSRLHVFAIMLFSLLVFLFAPLVTYCVKKYSFRLHLLFSVALMIVT 245 (300)
Q Consensus 166 ~~~~~~~~~~~~~~~~~lSlNaal~asvvLASRL~s~~~VF~lll~ai~lf~l~P~~r~~~~~~s~~~~~~~t~~~~~~~ 245 (300)
.+...+. +++.++++|+|||++|||||||||+|+.|||+|++||+|+|+++|.+||++|++++..|..+++.++..+
T Consensus 159 ~~~~~~~---~~~~~~~lSlNaAl~asvvLASRL~s~~~VF~lll~ai~lF~l~P~~r~~l~~~s~~~~~~l~~~l~~~~ 235 (282)
T PF06432_consen 159 SNSYVSR---GISLPSSLSLNAALFASVVLASRLPSTLHVFALLLFAIQLFALFPIFRRRLRRHSPNAHVVLTFILVILA 235 (282)
T ss_pred ccccccc---cCCCCCcchHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 6543221 1357999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCcccCCcc
Q 022236 246 LAFV--HMLHQLLFVLFLGLLVFVNVVCPYWLIRIQEYKFEINGPWD 290 (300)
Q Consensus 246 ~~~~--~~~s~~~~~~~~~~~~~i~~v~P~~~v~~q~yK~~I~GPWD 290 (300)
.+++ +..+...+++|++++++++++||+||+++|||||||+||||
T Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~i~~v~P~~~v~~Q~yK~~I~GPWD 282 (282)
T PF06432_consen 236 VYLLVYYPLSWSLAVLFLLLVLFITFVCPWWFVRLQRYKNEIHGPWD 282 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccCCCC
Confidence 8877 78899999999999999999999999999999999999999
No 2
>KOG3059 consensus N-acetylglucosaminyltransferase complex, subunit PIG-C/GPI2, required for phosphatidylinositol biosynthesis [Lipid transport and metabolism]
Probab=100.00 E-value=2e-80 Score=567.48 Aligned_cols=285 Identities=42% Similarity=0.654 Sum_probs=267.9
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCChhhHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Q 022236 5 SSSPNPPRWRKVAYGGMQPGFEDNHTDESFLEQMVMNASVVKRDILKVMQDSVSISQYLCIVALVVLVWAYTLRSSLDEN 84 (300)
Q Consensus 5 ~~~~~~~~WkKvLy~~~kQ~yPDNYtD~sFL~~L~~N~~v~~~~y~~~v~~~~~v~q~is~v~lf~~~F~~l~~~~~~p~ 84 (300)
..++.++||||+|| +|||||||||||+|||++|||+|++.|+||+++.|+.++.||+++++.|..+|.+++++.++|.
T Consensus 4 ~~~~~~~pWkKvLy--~kQ~YPDNYtDesFle~lr~ni~i~~~~~~~~v~~~~~~~~~L~~i~~~~~if~~~l~~~~~~~ 81 (292)
T KOG3059|consen 4 LDMMTRMPWKKVLY--LKQEYPDNYTDESFLEELRMNINISIYDLWSAVAESMVLSQHLDMITSFVVIFVSTLESNLSEN 81 (292)
T ss_pred ccccCCCchHHHHh--hcCCCCCcccCHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHhhhhhhHHHHHHHHHHHHhhcch
Confidence 36778999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhc----cccchhhHHHhHHHHHHHHHHHHHHhHHHHHhhhhcccchHHHHHHHHHHHHHHh
Q 022236 85 SLLLLDVSLLGTGFLILVLTE----GMLSLNLLFHYILNISFFITGLYVLAPIYQTLTRSISSDSIWALTISLLVLHLFL 160 (300)
Q Consensus 85 ~l~~~~~~l~~~g~~~~~~~~----~~~~~~~~~~~~ks~~i~~~~l~~LSPVLkTLT~s~SsDSIwals~~l~l~~l~~ 160 (300)
.+...+..+...||+.++... +..+.....+++|+.+.++.+++++|||+||||+|+|||||||+++|+++.|+++
T Consensus 82 ~~l~~~~~~~~~~fL~f~~~~~~~~r~~sl~~~~~~lks~~~vt~~ly~lsPVl~TLt~SiSsDsI~a~sv~l~L~~~ff 161 (292)
T KOG3059|consen 82 KILYGSNSIPGIGFLLFDLLLSPRGRTLSLALLPEDLKSIFTVTLFLYGLSPVLKTLTKSISSDSIWAMSVWLLLGNLFF 161 (292)
T ss_pred hhhccccchhHHHHHHHHHHhccccccCChhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcchHHHHHHHHHHHHHhc
Confidence 998888888899999998652 3345667899999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccCCCCCCCCCCcccchhhhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhhhhhHHhhhcccchHHHHHHH
Q 022236 161 HDYSGSTIKAPGALQNPTLTSCISLNASVVASVFIASRLPSRLHVFAIMLFSLLVFLFAPLVTYCVKKYSFRLHLLFSVA 240 (300)
Q Consensus 161 ~DY~~~~~~~~~~~~~~~~~~~lSlNaal~asvvLASRL~s~~~VF~lll~ai~lf~l~P~~r~~~~~~s~~~~~~~t~~ 240 (300)
||||.+.. ++++++|+|+|++|+|+|||||+++.|||+|++||+|+|+++|.+|+++++..+..+..+++.
T Consensus 162 ~~y~~s~~---------~vs~~lS~na~v~~sv~LaSRl~~~~~vF~fllfai~~~al~p~~~~~i~~~~~~~~~~~~~~ 232 (292)
T KOG3059|consen 162 HDYGISTI---------RVSGPLSLNAAVSASVLLASRLEKSIHVFNFLLFAIQLFALLPNFRKRIKKVIPRSSNLMVLV 232 (292)
T ss_pred cccccccc---------ccCCcchHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHH
Confidence 99987643 567789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCcccCCcccceeccccCC
Q 022236 241 LMIVTLAFVHMLHQLLFVLFLGLLVFVNVVCPYWLIRIQEYKFEINGPWDEAKLCFDITD 300 (300)
Q Consensus 241 ~~~~~~~~~~~~s~~~~~~~~~~~~~i~~v~P~~~v~~q~yK~~I~GPWD~A~p~~~~~~ 300 (300)
++..+.+.+...+...+++|+..+.+++++||.|+++.|+||||||||||||+|++|+++
T Consensus 233 ~~~~ai~~~~~~s~~~~~~F~~l~~~I~fvcp~~~I~~q~~k~~IhGpWDea~~~~d~t~ 292 (292)
T KOG3059|consen 233 LASVAIIIIADISLLIFFVFLSLICFINFVCPYWLIRLQLYKNDIHGPWDEASPKLDNTD 292 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccCCCC
Confidence 999998888777888899999999999999999999999999999999999999999875
No 3
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=55.05 E-value=17 Score=27.82 Aligned_cols=31 Identities=35% Similarity=0.608 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhhccCCcccCCc
Q 022236 259 LFLGLLVFVNVVCPYWLIRIQEYKFEINGPW 289 (300)
Q Consensus 259 ~~~~~~~~i~~v~P~~~v~~q~yK~~I~GPW 289 (300)
++.-+++|+.||.|.|++.-.+.|.+..+.-
T Consensus 6 l~~plivf~ifVap~WL~lHY~sk~~~~~gL 36 (75)
T PF06667_consen 6 LFVPLIVFMIFVAPIWLILHYRSKWKSSQGL 36 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 3455678899999999998877776665443
No 4
>PRK09458 pspB phage shock protein B; Provisional
Probab=52.15 E-value=22 Score=27.20 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhHHHHHHhhccCCcccCCcc
Q 022236 260 FLGLLVFVNVVCPYWLIRIQEYKFEINGPWD 290 (300)
Q Consensus 260 ~~~~~~~i~~v~P~~~v~~q~yK~~I~GPWD 290 (300)
..-+++|+.||.|.|++.-.+-|++-.+.-.
T Consensus 7 ~~PliiF~ifVaPiWL~LHY~sk~~~~~~Ls 37 (75)
T PRK09458 7 AIPLTIFVLFVAPIWLWLHYRSKRQGSQGLS 37 (75)
T ss_pred HHhHHHHHHHHHHHHHHHhhcccccCCCCCC
Confidence 4456788999999999988777766555443
No 5
>COG5232 SEC62 Preprotein translocase subunit Sec62 [Intracellular trafficking and secretion]
Probab=52.10 E-value=21 Score=32.73 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhhhh-hHHhhhcccchHHHHHH
Q 022236 205 VFAIMLFSLLVFLFAPLV-TYCVKKYSFRLHLLFSV 239 (300)
Q Consensus 205 VF~lll~ai~lf~l~P~~-r~~~~~~s~~~~~~~t~ 239 (300)
+|+++.+|+.+|-+||.. |+.....|.+.--++++
T Consensus 157 ~fvlv~lalVlfplWPr~mr~g~~Y~s~g~~G~i~~ 192 (259)
T COG5232 157 VFVLVTLALVLFPLWPRNMRQGLFYMSYGLGGFITF 192 (259)
T ss_pred HHHHHHHHHHHHhcCchHhhcCeeeeeeccchHHHH
Confidence 789999999999999975 65555444444333333
No 6
>PF00948 Flavi_NS1: Flavivirus non-structural Protein NS1 ; InterPro: IPR001157 The Flavivirus genome polypepetide contains the capsid protein C (core protein), the matrix protein (envelope protein M), the major envelope protein E, a number of small non structural proteins (NS1, NS2A, NS2B, NS4A and NS4B), helicase and RNA-directed polymerase (NS5) [].
Probab=49.77 E-value=6.4 Score=38.48 Aligned_cols=21 Identities=29% Similarity=0.681 Sum_probs=18.0
Q ss_pred hccCCcccCCcccceeccccC
Q 022236 279 QEYKFEINGPWDEAKLCFDIT 299 (300)
Q Consensus 279 q~yK~~I~GPWD~A~p~~~~~ 299 (300)
..||.+.+||||.+...+++.
T Consensus 258 pGY~~Q~~gPW~~~~l~l~~~ 278 (356)
T PF00948_consen 258 PGYKTQTKGPWNQGPLELKRE 278 (356)
T ss_pred CcccccccCCccCCceEEEec
Confidence 569999999999998877654
No 7
>PF06453 LT-IIB: Type II heat-labile enterotoxin , B subunit (LT-IIB); InterPro: IPR010503 These are B subunits from the type II heat-labile enterotoxin. The B subunits form a pentameric ring, which interacts with one A subunit. Thus, the structural arrangement of type I and type II heat-labile enterotoxins are very similar [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_F 1QCB_E 1QB5_D.
Probab=39.65 E-value=5.8 Score=32.27 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=7.6
Q ss_pred CCCCCCCCCCC
Q 022236 21 MQPGFEDNHTD 31 (300)
Q Consensus 21 ~kQ~yPDNYtD 31 (300)
.-|+|||||-.
T Consensus 74 gg~~YPdN~ls 84 (122)
T PF06453_consen 74 GGQDYPDNYLS 84 (122)
T ss_dssp --SSTTHHHHH
T ss_pred CCCcCchhHhh
Confidence 47899999854
No 8
>PF15210 SFTA2: Surfactant-associated protein 2
Probab=35.05 E-value=22 Score=25.57 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=16.6
Q ss_pred CCCCCCCCCC-ChhhHHHHHh
Q 022236 21 MQPGFEDNHT-DESFLEQMVM 40 (300)
Q Consensus 21 ~kQ~yPDNYt-D~sFL~~L~~ 40 (300)
.|..|++|-. |.+|||-|+|
T Consensus 11 Lk~sfl~n~S~~Ssfle~LeK 31 (59)
T PF15210_consen 11 LKDSFLANSSYDSSFLEFLEK 31 (59)
T ss_pred ehhhhccccchhhHHHHHHHH
Confidence 6888999986 5789999884
No 9
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=34.23 E-value=42 Score=23.09 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhH--HHHHHhhccCC
Q 022236 260 FLGLLVFVNVVCP--YWLIRIQEYKF 283 (300)
Q Consensus 260 ~~~~~~~i~~v~P--~~~v~~q~yK~ 283 (300)
..+.++|++|..| |.+..+..||.
T Consensus 17 igltv~f~~~L~PagWVLshL~~YKk 42 (44)
T PF02285_consen 17 IGLTVCFVTFLGPAGWVLSHLESYKK 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 3566778888888 55666677875
No 10
>PF12497 ERbeta_N: Estrogen receptor beta; InterPro: IPR021064 This entry represents estrogen receptor beta (ERbeta) and is found in eukaryotes, approximately 110 amino acids in length. The proteins are found in association with PF00104 from PFAM, PF00105 from PFAM. There is a conserved IPS sequence motif and there are two completely conserved residues (Y and W) that may be functionally important. ERbeta binds estrogens with an affinity similar to that of ERalpha, and activates expression of reporter genes containing estrogen response elements in an estrogen-dependent manner. ERbeta acts as a transcription factor once bound to its ligand and it can dimerise with ERalpha [].
Probab=32.86 E-value=20 Score=29.39 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=12.1
Q ss_pred cCCc-ccCCccccee
Q 022236 281 YKFE-INGPWDEAKL 294 (300)
Q Consensus 281 yK~~-I~GPWD~A~p 294 (300)
|-+. .++||+|+|+
T Consensus 84 y~e~~~~spW~e~~~ 98 (110)
T PF12497_consen 84 YAEPPPHSPWCEAKP 98 (110)
T ss_pred ccccCCCCccccccc
Confidence 6666 9999999998
No 11
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=31.60 E-value=22 Score=28.31 Aligned_cols=21 Identities=24% Similarity=0.329 Sum_probs=12.5
Q ss_pred CCCCCCC---CCC------hhhH---HHHHhcC
Q 022236 22 QPGFEDN---HTD------ESFL---EQMVMNA 42 (300)
Q Consensus 22 kQ~yPDN---YtD------~sFL---~~L~~N~ 42 (300)
-|.||+| |.+ ..|. +|||||-
T Consensus 21 WqEy~eNde~~~PlTEDElkEF~~kseQlrrNG 53 (97)
T PF15337_consen 21 WQEYPENDENCLPLTEDELKEFQVKSEQLRRNG 53 (97)
T ss_pred ccccCcCCcccCcCcHHHHHHHHHHHHHHHHcc
Confidence 4889966 332 1243 6777775
No 12
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.14 E-value=92 Score=30.67 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhhh-hHHhhhcc
Q 022236 206 FAIMLFSLLVFLFAPLV-TYCVKKYS 230 (300)
Q Consensus 206 F~lll~ai~lf~l~P~~-r~~~~~~s 230 (300)
|.++.+|+-+|=+||.. |+.+...|
T Consensus 197 fvl~tlaivLFPLWP~~mR~gvyY~s 222 (372)
T KOG2927|consen 197 FVLVTLAIVLFPLWPRRMRQGVYYLS 222 (372)
T ss_pred HHHHHHHHHhcccCcHHHhcceeeee
Confidence 48889999999999975 44444333
No 13
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=29.05 E-value=78 Score=21.66 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhH--HHHHHhhccCCc
Q 022236 261 LGLLVFVNVVCP--YWLIRIQEYKFE 284 (300)
Q Consensus 261 ~~~~~~i~~v~P--~~~v~~q~yK~~ 284 (300)
.+.++|++|..| |.+..++.||.+
T Consensus 18 gl~~~f~~~L~p~gWVLshL~~YKk~ 43 (43)
T cd00930 18 GLSVFFTTFLLPAGWVLSHLENYKKR 43 (43)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhccC
Confidence 444556666665 345556789863
No 14
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=28.98 E-value=5.2e+02 Score=26.35 Aligned_cols=116 Identities=13% Similarity=0.055 Sum_probs=64.6
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhcCCcccccHHHHHHH-HHHHHHHHHH------HHHHHHHHHHHHhC----------
Q 022236 17 AYGGMQPGFEDNHTDESFLEQMVMNASVVKRDILKVMQD-SVSISQYLCI------VALVVLVWAYTLRS---------- 79 (300)
Q Consensus 17 Ly~~~kQ~yPDNYtD~sFL~~L~~N~~v~~~~y~~~v~~-~~~v~q~is~------v~lf~~~F~~l~~~---------- 79 (300)
+|++.-||-||=+.++.-+++++.--..||. |..++.- +..++|-++. -.+==.+|-|+..|
T Consensus 355 lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp-~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~l 433 (509)
T KOG1298|consen 355 LLRRLLKPLPDLSDAEKVSDYIKSFYWIRKP-YSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVAL 433 (509)
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHH
Confidence 4444457889988888888888754444442 3332221 1122222211 11222467776554
Q ss_pred --CCCchhHHHHHHHHHHHHHHHHHHhccccchhhHHHhHHHHHHHHHHHHHHhHHHHH
Q 022236 80 --SLDENSLLLLDVSLLGTGFLILVLTEGMLSLNLLFHYILNISFFITGLYVLAPIYQT 136 (300)
Q Consensus 80 --~~~p~~l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ks~~i~~~~l~~LSPVLkT 136 (300)
-++|+++-++.-...+.-|.++.... +.+...+-+.|+.++..+...+-|.++.
T Consensus 434 LsGlnP~Pl~Lv~HffAValy~i~~ll~---p~PsP~riw~s~~i~~~A~~vi~P~i~a 489 (509)
T KOG1298|consen 434 LSGLNPRPLSLVLHFFAVALYGIYRLLS---PFPSPRRIWESLRILSLASSVIFPIIKA 489 (509)
T ss_pred hcCCCCCchHHHHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777775554433344444444432 2333455567788888888888898874
No 15
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=26.54 E-value=3.7e+02 Score=22.27 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=22.3
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCChhhHHHHHhcCC
Q 022236 5 SSSPNPPRWRKVAYGGMQPGFEDNHTDESFLEQMVMNAS 43 (300)
Q Consensus 5 ~~~~~~~~WkKvLy~~~kQ~yPDNYtD~sFL~~L~~N~~ 43 (300)
...++.+||+.-+ |..+=..|.|. +.-.+++++|..
T Consensus 3 ~~~~~~Rpw~eF~-~~~~fs~P~~~--~~~~~Ri~~Nl~ 38 (153)
T PF03208_consen 3 SRLSPLRPWREFF-DTSRFSVPSSF--SEAKSRIKRNLS 38 (153)
T ss_pred cccCCCCCHHHHh-CccCCCCCCCH--HHHHHHHHHHHH
Confidence 3456778998888 44555666222 345677777753
No 16
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.37 E-value=99 Score=23.58 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhHHHHHHhhccCCcccC
Q 022236 260 FLGLLVFVNVVCPYWLIRIQEYKFEING 287 (300)
Q Consensus 260 ~~~~~~~i~~v~P~~~v~~q~yK~~I~G 287 (300)
.+-+++|+.||.|.|++.-.+-|.+-.+
T Consensus 7 ~~Pliif~ifVap~wl~lHY~~k~~~~~ 34 (75)
T TIGR02976 7 AIPLIIFVIFVAPLWLILHYRSKRKTAA 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 3445677889999999877665554443
No 17
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=25.29 E-value=6.2e+02 Score=27.52 Aligned_cols=25 Identities=20% Similarity=0.615 Sum_probs=18.4
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHhhhhh
Q 022236 195 IASRLPSRLHVFAIMLFSLLVFLFAPLV 222 (300)
Q Consensus 195 LASRL~s~~~VF~lll~ai~lf~l~P~~ 222 (300)
++.+..+...+|++++|.+ ...|.+
T Consensus 654 ~~~~f~~~~~a~a~l~F~l---ly~PC~ 678 (772)
T PRK09554 654 MSQKFGSAAAAYSYLIFVL---LYVPCI 678 (772)
T ss_pred hhhccCCHHHHHHHHHHHH---HHHHHH
Confidence 4778889999999998855 344544
No 18
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.29 E-value=92 Score=27.91 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=25.1
Q ss_pred CCCCccccccCCCCCCCCCCCCChhhHHHHHhcCCcccccHH
Q 022236 9 NPPRWRKVAYGGMQPGFEDNHTDESFLEQMVMNASVVKRDIL 50 (300)
Q Consensus 9 ~~~~WkKvLy~~~kQ~yPDNYtD~sFL~~L~~N~~v~~~~y~ 50 (300)
.++||+..+= ..+=..|+|+.|. .++.++|.+--+-+|.
T Consensus 36 t~RpW~ef~d-~~~fs~P~s~s~a--~sRi~~Nl~yF~~NY~ 74 (187)
T KOG3142|consen 36 TRRPWSEFFD-RSAFSRPRSLSDA--TSRIKRNLSYFRVNYV 74 (187)
T ss_pred ccCCHHHHHc-ccccCCCccHHHH--HHHHHHHHHHHHHhHH
Confidence 4577988775 2334789999886 4567788654444443
No 19
>PRK09664 tryptophan permease TnaB; Provisional
Probab=20.72 E-value=8.6e+02 Score=24.36 Aligned_cols=37 Identities=19% Similarity=0.027 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHhhccC
Q 022236 246 LAFVHMLHQLLFVLFLGLL-VFVNVVCPYWLIRIQEYK 282 (300)
Q Consensus 246 ~~~~~~~s~~~~~~~~~~~-~~i~~v~P~~~v~~q~yK 282 (300)
+++.|+-....++-|.... .....++|...+|.+|+|
T Consensus 337 ~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 337 LYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666666666676554 346678999999999966
No 20
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=20.68 E-value=8.4e+02 Score=24.40 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHHhHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCCccCCCCCCCCCCcccchhhhHHHHHHHHHhcCCCCchhH
Q 022236 126 GLYVLAPIYQTLTRSISSDSIWALTISLLVLHLFLHDYSGSTIKAPGALQNPTLTSCISLNASVVASVFIASRLPSRLHV 205 (300)
Q Consensus 126 ~l~~LSPVLkTLT~s~SsDSIwals~~l~l~~l~~~DY~~~~~~~~~~~~~~~~~~~lSlNaal~asvvLASRL~s~~~V 205 (300)
.++..-|..+. +....+||.-++..+ ++|+....-.+|- -+.-+++.=.+.=++...+|+..+...+.
T Consensus 26 l~~~~~~~~~~----~~~~~~WavlTVvvv-----fe~tvGatl~KG~---nR~lGTl~aG~La~~~~~la~~~g~~~~~ 93 (406)
T PF11744_consen 26 LLYFVGPLYDG----FGQNAMWAVLTVVVV-----FEPTVGATLSKGL---NRGLGTLLAGILAFGVSWLASLSGDPGEP 93 (406)
T ss_pred HHHHhhhhhhh----hhhcchHHHhhhHhh-----ccccccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCccchh
Confidence 34444455544 456788887665443 3443211111110 02234444444455666788887774444
No 21
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=20.23 E-value=4e+02 Score=20.35 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHH
Q 022236 62 YLCIVALVVLVWAYTLRSSLDENSLLLLDVSLLGTGFLILV 102 (300)
Q Consensus 62 ~is~v~lf~~~F~~l~~~~~~p~~l~~~~~~l~~~g~~~~~ 102 (300)
.+..+.-..+++.-.|.|--++..++.++...+..||..-.
T Consensus 25 ~vg~~lt~~Li~ASvykGyt~~~~ii~iD~~Sl~aGf~~a~ 65 (74)
T PF09964_consen 25 YVGTILTVALIAASVYKGYTHTWWIIFIDAVSLTAGFLYAK 65 (74)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 35677777888889999999999999999999999988754
No 22
>PF07843 DUF1634: Protein of unknown function (DUF1634); InterPro: IPR012861 This family contains many hypothetical bacterial and archaeal proteins. A few members of this family are annotated as being putative transmembrane proteins, and the region in question in fact contains many hydrophobic residues.
Probab=20.07 E-value=3.2e+02 Score=21.86 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhHHHHHh
Q 022236 118 LNISFFITGLYVLAPIYQTL 137 (300)
Q Consensus 118 ks~~i~~~~l~~LSPVLkTL 137 (300)
.+.+.+...+++++||+|=.
T Consensus 55 ~~ii~lGl~lLI~TPvlRVv 74 (105)
T PF07843_consen 55 YAIIQLGLLLLIATPVLRVV 74 (105)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 45566777788999999944
Done!