BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022237
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 277 bits (708), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 187/292 (64%), Gaps = 12/292 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 11 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 70
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 71 IEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMDA 118
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +A
Sbjct: 119 PVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLA 178
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct: 179 ISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 238
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292
+ LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 239 GTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQF 290
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 277 bits (708), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 187/292 (64%), Gaps = 12/292 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 33 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 92
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 93 IEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMDA 140
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +A
Sbjct: 141 PVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLA 200
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct: 201 ISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 260
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292
+ LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 261 GTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQF 312
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 159/289 (55%), Gaps = 14/289 (4%)
Query: 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL 61
G A+NL+KAGY + V D+ + + G + + + +DVVI+ LP+S HV
Sbjct: 14 GAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISXLPASQHVE 73
Query: 62 DVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+Y +GLL + P L+++ STI P ++R I AA L LDA
Sbjct: 74 GLYLDDDGLLA---HIAPGTLVLECSTIAPTSARKIHAAARERGL----------AXLDA 120
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGG A AGTLTF VGG +A + A+PLF + G+N + G G G AK+CNN +A
Sbjct: 121 PVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLA 180
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
V +G +EA LG + G+ A L +I SS W+ + YNP PGV E PASR+Y GGF
Sbjct: 181 VLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGGF 240
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 289
++L AKDL LA +A+ P S A +Y L + G+ +DFS V
Sbjct: 241 XAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 289
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 159/289 (55%), Gaps = 14/289 (4%)
Query: 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL 61
G A+NL+KAGY + V D+ + + G + + + +DVVI+ LP+S HV
Sbjct: 15 GAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISXLPASQHVE 74
Query: 62 DVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+Y +GLL + P L+++ STI P ++R I AA L LDA
Sbjct: 75 GLYLDDDGLLA---HIAPGTLVLECSTIAPTSARKIHAAARERGL----------AXLDA 121
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGG A AGTLTF VGG +A + A+PLF + G+N + G G G AK+CNN +A
Sbjct: 122 PVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLA 181
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
V +G +EA LG + G+ A L +I SS W+ + YNP PGV E PASR+Y GGF
Sbjct: 182 VLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGGF 241
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 289
++L AKDL LA +A+ P S A +Y L + G+ +DFS V
Sbjct: 242 XAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 290
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 150/294 (51%), Gaps = 20/294 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL+K G + D+ + G E +VA ASD++ T LP++ V
Sbjct: 15 MGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIV 74
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-MLD 119
V NGP G+L + +++D S++ P ++ LK K + E + +D
Sbjct: 75 ETVMNGPGGVLSACKA--GTVIVDMSSVSPSST-----------LKMAKVAAEKGIDYVD 121
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
APVSGG AEAGTLT MVG SE ++ +P+ +GK+ + G G G A KI NNL +
Sbjct: 122 APVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLL 181
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
+M ++EAL LG G+ T+ +I+ SS R ++ ++ ME S ++ GG
Sbjct: 182 GCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK------MEKFIMSGDFAGG 235
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
FA L KDL LAL + KE V P+T+ A I+ G +D S V + +
Sbjct: 236 FAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVW 289
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 137/293 (46%), Gaps = 19/293 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL+KAG + + + + + + +G TP EV E+ V ML +
Sbjct: 12 MGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTFAMLADPAAA 71
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+V G +G+L+G R +D ST+DP TS+ I AV + K + L+A
Sbjct: 72 EEVCFGKHGVLEGIGEGRG--YVDMSTVDPATSQRIGVAV---VAKGGR-------FLEA 119
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSG AE GTL + G + Y A P F MGK I+ G G GA K+ N+ M
Sbjct: 120 PVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMG 179
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
M E L LG+ G++ + ++ + + NP+ + G+ RN+ F
Sbjct: 180 GMMACFCEGLALGEKAGLATDAILDVIGAGA-------MANPMFALKGGLIRDRNFAPAF 232
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
K M KDL LA+A VG ++ A +++ G +DFS +F+ Y
Sbjct: 233 PLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTY 285
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 139/293 (47%), Gaps = 21/293 (7%)
Query: 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL 61
G + NL+KAGY + V D N + G T T +AE DV+IT LP+S HV
Sbjct: 17 GKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITXLPNSPHVK 76
Query: 62 DVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+V G NG+++G +P +LID S+I P SR IS A+ K E LDA
Sbjct: 77 EVALGENGIIEGA---KPGTVLIDXSSIAPLASREISDAL-------KAKGVE---XLDA 123
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGG A GTL+ VGG + + L + + ++ G G G K+ N + +A
Sbjct: 124 PVSGGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVA 183
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+++ SEALTL G++ + + + A D+ P RN+ GF
Sbjct: 184 LNIAAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------XVXDRNFKPGF 236
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
L KDL AL ++ VG PLT+ + L +GH + D S + +Y
Sbjct: 237 RIDLHIKDLANALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSALACYY 289
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 139/288 (48%), Gaps = 24/288 (8%)
Query: 6 ASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65
A NL +AG+++ V + ++ S +G ET +V E +D++ +P + V DV
Sbjct: 19 AINLARAGHQLHVTTIGPVADELLS-LGAVNVETARQVTEFADIIFIXVPDTPQVEDVLF 77
Query: 66 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 125
G +G + S++ + ++D S+I P ++ + V+ E + LDAPVSGG
Sbjct: 78 GEHGCAK--TSLQGKTIVDXSSISPIETKRFAQRVN-----EXGADY-----LDAPVSGG 125
Query: 126 VLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG 185
+ A GTL+ VGG + + KPLF +GKN GG G+G K+ N + +A+++
Sbjct: 126 EIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEA 185
Query: 186 VSEALTLGQSLGISASTLTKILNS--SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 243
VSEAL G + + L +S+R + +R + GF
Sbjct: 186 VSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXI---------NRTFEPGFKIA 236
Query: 244 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291
L KDLNLAL SAK + ++ P T+ Q+++ NG D S Q
Sbjct: 237 LHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAXVQ 284
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 19/291 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA+NL++AG+ + V + N +G +P EV A D+ I ML +
Sbjct: 12 MGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAA 71
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+V G NG+L+G R ID ST+D +TS I AAV+ L+A
Sbjct: 72 REVCFGANGVLEGIGGGRG--YIDMSTVDDETSTAIGAAVTA----------RGGRFLEA 119
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSG AE GTL + G + + A P F ++GK ++ G G GA K+ N+ M
Sbjct: 120 PVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMG 179
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
M + E + LG++ G+ L ++L++ + NP+ + S + F
Sbjct: 180 QMMTALGEGMALGRNCGLDGGQLLEVLDAGA-------MANPMFKGKGQMLLSGEFPTSF 232
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291
K M KDL LA+ +G + A + + + GH +DF+ VF+
Sbjct: 233 PLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFR 283
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 134/273 (49%), Gaps = 24/273 (8%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG+ MA +L + + + ++ + G ++ P E + V+ T LP++ V
Sbjct: 12 MGYPMAGHLARRFPTLVWNRTFEKALRHQEEFG--SEAVPLERVAEARVIFTCLPTTREV 69
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+V L+ G +D+++ +P+ SR ++ L+EK ++ LDA
Sbjct: 70 YEVAEALYPYLREGT-----YWVDATSGEPEASRRLAER-----LREKGVTY-----LDA 114
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGG AEAGTLT M+GG E+A + +P FL+ K ++ G G G A K NN +A
Sbjct: 115 PVSGGTSGAEAGTLTVMLGGPEEAVERVRP-FLAYAKKVVHVGPVGAGHAVKAINNALLA 173
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
V++ E L G+SA +++N+SS R S+ + N +P + +R + F
Sbjct: 174 VNLWAAGEGLLALVKQGVSAEKALEVINASSGR--SNATENLIPQRV----LTRAFPKTF 227
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 273
A L+ KDL +A+ PL A+++Y
Sbjct: 228 ALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVY 260
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 123/294 (41%), Gaps = 21/294 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG + SNL+K G+ + V + +F G TP EV D+ +
Sbjct: 41 MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAA 100
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
D+ GP+G+LQG +RP + +D ST+D T ++ + + L+
Sbjct: 101 KDLVLGPSGVLQG---IRPGKCYVDMSTVDADTVTELAQVIVS----------RGGRFLE 147
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
APVSG + G L + G Y+ F +MGK + + G GN A + N+
Sbjct: 148 APVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ 207
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
M ++E LTL Q G S TL ILN D +++G N+
Sbjct: 208 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLD--QKCQNILQG-----NFKPD 260
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
F K + KDL LA+A V P+ + A ++Y + D S V++ Y
Sbjct: 261 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAY 314
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 128/272 (47%), Gaps = 24/272 (8%)
Query: 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL 61
G+ A +L + + + ++ + G ++ P E + V+ T LP++ V
Sbjct: 13 GYPXAGHLARRFPTLVWNRTFEKALRHQEEFG--SEAVPLERVAEARVIFTCLPTTREVY 70
Query: 62 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 121
+V L+ G +D+++ +P+ SR ++ L+EK ++ LDAP
Sbjct: 71 EVAEALYPYLREGT-----YWVDATSGEPEASRRLAER-----LREKGVTY-----LDAP 115
Query: 122 VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV 181
VSGG AEAGTLT +GG E+A + +P FL+ K ++ G G G A K NN +AV
Sbjct: 116 VSGGTSGAEAGTLTVXLGGPEEAVERVRP-FLAYAKKVVHVGPVGAGHAVKAINNALLAV 174
Query: 182 SMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFA 241
++ E L G+SA +++N+SS R ++++ P + P + FA
Sbjct: 175 NLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKT------FA 228
Query: 242 SKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 273
L+ KDL +A PL A+++Y
Sbjct: 229 LGLLVKDLGIAXGVLDGEKAPSPLLRLAREVY 260
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 128/294 (43%), Gaps = 25/294 (8%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG M+ NL+K G+K+ V + + + G E+P EV + I ML
Sbjct: 32 MGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAA 91
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
L V G+L+ + ID ST+D +TS I+ A++ + ++
Sbjct: 92 LSVVFDKGGVLE--QICEGKGYIDMSTVDAETSLKINEAITG----------KGGRFVEG 139
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSG AE G L + G + ++ + P F +GK + Y G GNGA K+ N+ M
Sbjct: 140 PVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMG 199
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRN---YG 237
M SE L L G+S+ TL IL+ + NP + +G S N Y
Sbjct: 200 SMMNAFSEGLVLADKSGLSSDTLLDILDLGAMT-------NP---MFKGKGPSMNKSSYP 249
Query: 238 GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291
F K KD+ LALA E V P+ + A + + K G DFS V +
Sbjct: 250 PAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIE 303
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 29/293 (9%)
Query: 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL 61
G A L +AGY + V + + +G E A +D+V++ L + + V
Sbjct: 43 GLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSXLENGAVVQ 102
Query: 62 DVYNGPNGLLQG-GNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
DV QG + +P L +D ++I P+ +R+ +A + + LD
Sbjct: 103 DVL-----FAQGVAAAXKPGSLFLDXASITPREARDHAARLGALGIAH----------LD 147
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
PVSGG + AE GTL GG ++ + PL G+ T + G G+G K+ N +
Sbjct: 148 TPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGRAT-HVGPHGSGQLTKLANQXIV 206
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSA--RCWSSDSYNPVPGVMEGVPASRNYG 237
+++ V+EAL G + + + + A R V R++
Sbjct: 207 GITIGAVAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXV---------ERDFA 257
Query: 238 GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 290
+ KD ALA+A+E+G D P+T + +YA+ E+G D S +F
Sbjct: 258 PRARLSIQLKDXRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLF 310
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 26/258 (10%)
Query: 42 EVAEASDVVITMLPSSSHVLDVYNGPNG---LLQGGNSVRPQLLIDSSTIDPQTSRNISA 98
E A D ++ ++ +++ V V G +G L + G++V SSTI ++ I+A
Sbjct: 60 EFAGVVDALVILVVNAAQVRQVLFGEDGVAHLXKPGSAVXV-----SSTISSADAQEIAA 114
Query: 99 AVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 158
A++ L LDAPVSGG + A G T GSE A+ KP+ ++ N
Sbjct: 115 ALTALNLN----------XLDAPVSGGAVKAAQGEXTVXASGSEAAFTRLKPVLDAVASN 164
Query: 159 TIYCGGA-GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS 217
G G+ KI + L V + +EA L GI ++ ++ W
Sbjct: 165 VYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALAARAGIPLDVXYDVVTHAAGNSWXF 224
Query: 218 DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 277
+ N V++G +Y A + KDL L +AK + PL S A + +
Sbjct: 225 E--NRXQHVVDG-----DYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNXFTSAS 277
Query: 278 ENGHDSKDFSCVFQHYYG 295
G+ +D S V + + G
Sbjct: 278 NAGYGKEDDSAVIKIFSG 295
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 116/272 (42%), Gaps = 17/272 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA+ + + + V+D+ M ++ G ++ +VA A + IT+L + V
Sbjct: 26 MGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHITVL-DDAQV 84
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+V G + G + I S T + +R++ A + ++DA
Sbjct: 85 REVVGELAGHAKPGTVIAIHSTI-SDTTAVELARDLKA--------------RDIHIVDA 129
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGG AA G L MVG + Y+ KP F I+ G G G K+ N+
Sbjct: 130 PVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTF 189
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
S EA+ L ++ G+ L +++ + A + + + P + Y
Sbjct: 190 TSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFL 249
Query: 241 ASK-LMAKDLNLALASAKEVGVDCPLTSQAQD 271
++ L KDL+LALA + V VD PL A +
Sbjct: 250 HTRGLGEKDLSLALALGEAVSVDLPLARLAYE 281
>pdb|2YYY|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
pdb|2YYY|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
Length = 343
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 10 MKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS---SSHVLDVY-- 64
++ GYK+ V + +K+F D G+P + T ++ E +D+V+ P ++ ++Y
Sbjct: 45 VEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDADIVVDGAPKKIGKQNLENIYKP 104
Query: 65 NGPNGLLQGGNSVR 78
+ +LQGG +
Sbjct: 105 HKVKAILQGGEKAK 118
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 122 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAK 172
+ GV E G L + M GG ++A++ +P+F ++ T Y G G G K
Sbjct: 124 IGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVK 183
Query: 173 ICNNLTMAVSMLGVSEA-LTLGQSLGISASTLTKIL 207
+ +N M ++EA L LG+ A+ L ++
Sbjct: 184 MVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 219
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 122 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAK 172
+ GV E G L + M GG ++A++ +P+F ++ T Y G G G K
Sbjct: 125 IGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVK 184
Query: 173 ICNNLTMAVSMLGVSEA-LTLGQSLGISASTLTKIL 207
+ +N M ++EA L LG+ A+ L ++
Sbjct: 185 MVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 220
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
F+ K M K ++L L AKE+G+D P + ++I + + +SK VF +Y
Sbjct: 320 FSDKRMKKAISL-LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSK--IIVFTNY 370
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 122 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-------GKNTI-YCGGAGNGAA 170
+ GV E G L + M GG ++AY P+F + GK + Y G G G
Sbjct: 125 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 184
Query: 171 AKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARCWSS---DSYNPVPGV 226
K+ +N M ++E+ L + LG+S + + I W+ DSY +
Sbjct: 185 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE-----WNEGELDSY-LIEIT 238
Query: 227 MEGVPASRNYGGGF-ASKLMAKDLN-----LALASAKEVGVDCPLTSQAQDIYAKLCENG 280
E + + G G+ K++ K N SA ++GV PL +++ ++A+
Sbjct: 239 KEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES--VFARYISTY 296
Query: 281 HDSK 284
D +
Sbjct: 297 KDER 300
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 122 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-------GKNTI-YCGGAGNGAA 170
+ GV E G L + M GG ++AY P+F + GK + Y G G G
Sbjct: 124 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 183
Query: 171 AKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARCWSS---DSYNPVPGV 226
K+ +N M ++E+ L + LG+S + + I W+ DSY +
Sbjct: 184 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE-----WNEGELDSY-LIEIT 237
Query: 227 MEGVPASRNYGGGF-ASKLMAKDLN-----LALASAKEVGVDCPLTSQAQDIYAKLCENG 280
E + + G G+ K++ K N SA ++GV PL +++ ++A+
Sbjct: 238 KEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES--VFARYISTY 295
Query: 281 HDSK 284
D +
Sbjct: 296 KDER 299
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 122 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-------GKNTI-YCGGAGNGAA 170
+ GV E G L + M GG ++AY P+F + GK + Y G G G
Sbjct: 123 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 182
Query: 171 AKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARCWSS---DSYNPVPGV 226
K+ +N M ++E+ L + LG+S + + I W+ DSY +
Sbjct: 183 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE-----WNEGELDSY-LIEIT 236
Query: 227 MEGVPASRNYGGGF-ASKLMAKDLN-----LALASAKEVGVDCPLTSQAQDIYAKLCENG 280
E + + G G+ K++ K N SA ++GV PL +++ ++A+
Sbjct: 237 KEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES--VFARYISTY 294
Query: 281 HDSK 284
D +
Sbjct: 295 KDER 298
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein 4
Et Domain
Length = 90
Score = 27.7 bits (60), Expect = 9.0, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 75 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 109
NS ++ ID T+ P T R + V++C+ K++K
Sbjct: 54 NSNPDEIEIDFETLKPSTLRELERYVTSCLRKKRK 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,933,010
Number of Sequences: 62578
Number of extensions: 350769
Number of successful extensions: 670
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 30
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)