Query 022237
Match_columns 300
No_of_seqs 189 out of 1761
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:04:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 1.5E-56 3.2E-61 386.4 31.0 275 1-294 11-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 1.7E-53 3.7E-58 360.2 30.1 280 1-299 46-326 (327)
3 TIGR01692 HIBADH 3-hydroxyisob 100.0 7.2E-49 1.6E-53 347.2 33.1 281 1-293 7-287 (288)
4 PRK15059 tartronate semialdehy 100.0 7.6E-49 1.6E-53 346.4 32.4 275 1-295 11-285 (292)
5 PRK15461 NADH-dependent gamma- 100.0 2.1E-47 4.6E-52 338.6 32.5 277 1-295 12-288 (296)
6 TIGR01505 tartro_sem_red 2-hyd 100.0 2.7E-44 5.9E-49 318.7 31.9 277 1-296 10-286 (291)
7 PLN02858 fructose-bisphosphate 100.0 1.3E-44 2.9E-49 370.7 31.1 278 1-295 15-293 (1378)
8 PRK11559 garR tartronate semia 100.0 1.2E-43 2.7E-48 315.3 31.3 276 1-295 13-288 (296)
9 PLN02858 fructose-bisphosphate 100.0 1.6E-42 3.5E-47 355.4 31.5 278 1-295 335-613 (1378)
10 PLN02350 phosphogluconate dehy 100.0 1.7E-39 3.7E-44 301.8 25.5 255 1-278 17-299 (493)
11 PRK12490 6-phosphogluconate de 100.0 1.1E-39 2.3E-44 289.9 22.9 268 1-293 11-291 (299)
12 PRK09599 6-phosphogluconate de 100.0 4.3E-37 9.4E-42 273.5 22.7 267 1-293 11-292 (301)
13 PRK09287 6-phosphogluconate de 100.0 8.7E-35 1.9E-39 269.2 24.0 247 1-270 1-273 (459)
14 PTZ00142 6-phosphogluconate de 100.0 7E-32 1.5E-36 250.8 23.8 252 1-275 12-290 (470)
15 TIGR00872 gnd_rel 6-phosphoglu 100.0 3.5E-32 7.6E-37 241.5 20.7 246 1-270 11-266 (298)
16 TIGR00873 gnd 6-phosphoglucona 100.0 1.6E-31 3.5E-36 248.4 22.0 251 1-274 10-285 (467)
17 TIGR03026 NDP-sugDHase nucleot 100.0 8.9E-30 1.9E-34 235.8 20.8 246 1-276 11-296 (411)
18 PF03446 NAD_binding_2: NAD bi 100.0 3.8E-29 8.1E-34 203.0 13.0 151 1-164 12-163 (163)
19 COG1023 Gnd Predicted 6-phosph 100.0 5E-27 1.1E-31 192.8 16.9 253 1-278 11-276 (300)
20 PRK11064 wecC UDP-N-acetyl-D-m 99.9 2.1E-25 4.6E-30 206.1 24.4 246 1-272 14-291 (415)
21 PRK15182 Vi polysaccharide bio 99.9 6.8E-26 1.5E-30 209.3 21.0 246 1-274 17-291 (425)
22 PRK14618 NAD(P)H-dependent gly 99.9 7.8E-27 1.7E-31 210.3 13.8 266 1-295 15-322 (328)
23 PRK15057 UDP-glucose 6-dehydro 99.9 6.9E-24 1.5E-28 193.8 22.2 230 1-272 11-279 (388)
24 PRK00094 gpsA NAD(P)H-dependen 99.9 6E-25 1.3E-29 197.9 13.8 270 1-294 12-323 (325)
25 PRK14619 NAD(P)H-dependent gly 99.9 2E-24 4.4E-29 192.8 14.0 245 1-295 15-300 (308)
26 PRK06129 3-hydroxyacyl-CoA deh 99.9 3.7E-23 8E-28 184.7 20.5 255 1-292 13-295 (308)
27 COG1004 Ugd Predicted UDP-gluc 99.9 3.3E-21 7.1E-26 170.6 22.0 242 1-272 11-290 (414)
28 PRK12557 H(2)-dependent methyl 99.9 1.1E-21 2.4E-26 176.0 19.2 193 2-210 32-239 (342)
29 PF14833 NAD_binding_11: NAD-b 99.9 3.8E-22 8.2E-27 154.0 10.2 122 166-293 1-122 (122)
30 COG0362 Gnd 6-phosphogluconate 99.9 8.6E-21 1.9E-25 166.6 16.3 252 1-275 14-291 (473)
31 COG0240 GpsA Glycerol-3-phosph 99.9 2.6E-20 5.7E-25 162.8 16.5 274 1-293 12-321 (329)
32 PLN02353 probable UDP-glucose 99.8 4.3E-19 9.4E-24 165.5 24.2 245 1-272 12-302 (473)
33 COG0677 WecC UDP-N-acetyl-D-ma 99.8 1.1E-18 2.4E-23 154.1 16.8 203 1-210 20-253 (436)
34 PRK07531 bifunctional 3-hydrox 99.8 1.5E-18 3.2E-23 164.2 18.5 252 1-291 15-293 (495)
35 PLN02688 pyrroline-5-carboxyla 99.8 4.7E-18 1E-22 148.9 16.4 241 1-280 11-264 (266)
36 KOG2653 6-phosphogluconate deh 99.8 9.5E-18 2.1E-22 145.3 15.3 252 1-276 17-295 (487)
37 PRK08229 2-dehydropantoate 2-r 99.7 2E-17 4.4E-22 150.0 14.0 251 1-285 13-325 (341)
38 PRK07679 pyrroline-5-carboxyla 99.7 4.6E-17 1E-21 143.5 14.7 242 1-280 14-269 (279)
39 PRK08268 3-hydroxy-acyl-CoA de 99.7 1.1E-16 2.3E-21 151.4 16.1 180 1-212 18-227 (507)
40 PRK09260 3-hydroxybutyryl-CoA 99.7 1.6E-16 3.4E-21 140.7 14.6 181 1-211 12-221 (288)
41 PRK08507 prephenate dehydrogen 99.7 2E-15 4.3E-20 132.8 20.3 181 1-207 11-206 (275)
42 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 5.4E-16 1.2E-20 146.3 16.2 179 1-212 16-225 (503)
43 TIGR01724 hmd_rel H2-forming N 99.7 3.3E-15 7.2E-20 129.8 19.4 153 2-164 32-194 (341)
44 PRK11199 tyrA bifunctional cho 99.7 9.7E-16 2.1E-20 140.1 16.8 168 1-205 110-279 (374)
45 PRK08269 3-hydroxybutyryl-CoA 99.7 4.4E-16 9.5E-21 138.9 13.6 187 1-212 1-220 (314)
46 PRK06130 3-hydroxybutyryl-CoA 99.7 1.5E-15 3.2E-20 136.0 15.0 185 1-213 15-222 (311)
47 PRK07417 arogenate dehydrogena 99.7 9.3E-16 2E-20 135.1 12.2 165 1-185 11-188 (279)
48 TIGR03376 glycerol3P_DH glycer 99.7 7.4E-16 1.6E-20 138.4 11.7 261 1-274 10-330 (342)
49 PRK12439 NAD(P)H-dependent gly 99.7 1.7E-15 3.7E-20 137.0 13.8 274 1-294 18-328 (341)
50 PTZ00345 glycerol-3-phosphate 99.6 3.7E-15 8.1E-20 134.7 14.6 273 1-294 22-354 (365)
51 PRK07066 3-hydroxybutyryl-CoA 99.6 1.6E-14 3.6E-19 128.5 18.2 255 1-291 18-295 (321)
52 PRK08655 prephenate dehydrogen 99.6 2.2E-14 4.9E-19 133.5 19.3 185 1-206 12-201 (437)
53 PRK12491 pyrroline-5-carboxyla 99.6 1.1E-14 2.4E-19 127.5 15.6 244 1-279 13-266 (272)
54 PLN02545 3-hydroxybutyryl-CoA 99.6 2.8E-14 6.1E-19 126.8 14.5 180 1-211 15-223 (295)
55 PRK07530 3-hydroxybutyryl-CoA 99.6 4.5E-14 9.8E-19 125.3 15.0 180 1-211 15-223 (292)
56 PRK14620 NAD(P)H-dependent gly 99.6 1.2E-13 2.6E-18 124.4 16.9 269 1-293 11-324 (326)
57 PRK11880 pyrroline-5-carboxyla 99.6 2.9E-13 6.4E-18 118.6 17.9 242 1-280 13-265 (267)
58 COG0345 ProC Pyrroline-5-carbo 99.6 2.7E-13 5.8E-18 116.8 16.8 243 1-280 12-264 (266)
59 PRK06545 prephenate dehydrogen 99.5 3.1E-13 6.8E-18 123.2 17.0 185 1-208 11-211 (359)
60 PRK06035 3-hydroxyacyl-CoA deh 99.5 9.9E-14 2.1E-18 123.1 12.4 184 1-212 14-226 (291)
61 PRK08293 3-hydroxybutyryl-CoA 99.5 2.6E-13 5.7E-18 120.1 13.4 183 1-212 14-226 (287)
62 PRK07680 late competence prote 99.5 1.3E-12 2.8E-17 114.8 17.1 186 1-211 11-206 (273)
63 PRK07819 3-hydroxybutyryl-CoA 99.5 7.9E-13 1.7E-17 116.7 15.8 185 1-212 16-227 (286)
64 COG2085 Predicted dinucleotide 99.5 1.5E-13 3.3E-18 112.9 10.0 165 1-179 12-195 (211)
65 PRK06476 pyrroline-5-carboxyla 99.5 1.4E-12 3E-17 113.7 15.5 180 1-211 11-197 (258)
66 PRK05808 3-hydroxybutyryl-CoA 99.4 2E-12 4.3E-17 114.2 14.0 183 1-211 14-222 (282)
67 PF02153 PDH: Prephenate dehyd 99.4 3.9E-12 8.4E-17 110.8 14.9 158 5-179 1-173 (258)
68 PRK07502 cyclohexadienyl dehyd 99.4 9E-12 1.9E-16 111.4 16.6 162 1-179 17-194 (307)
69 TIGR00112 proC pyrroline-5-car 99.4 1.1E-11 2.5E-16 107.0 14.7 229 13-276 9-243 (245)
70 PTZ00431 pyrroline carboxylate 99.4 1.7E-11 3.7E-16 106.9 15.3 236 1-279 14-259 (260)
71 TIGR01915 npdG NADPH-dependent 99.4 4.2E-12 9.1E-17 108.0 11.0 165 1-179 12-204 (219)
72 COG0287 TyrA Prephenate dehydr 99.4 3.9E-11 8.5E-16 104.8 16.6 162 1-179 14-186 (279)
73 PRK07634 pyrroline-5-carboxyla 99.3 4E-11 8.7E-16 103.7 15.9 184 1-210 15-209 (245)
74 PRK12921 2-dehydropantoate 2-r 99.3 9.6E-11 2.1E-15 104.6 16.9 251 1-277 11-301 (305)
75 PLN02256 arogenate dehydrogena 99.3 1.3E-10 2.8E-15 103.2 16.8 157 1-175 47-215 (304)
76 PRK06928 pyrroline-5-carboxyla 99.3 6.8E-11 1.5E-15 104.1 13.0 185 1-211 12-209 (277)
77 PLN02712 arogenate dehydrogena 99.3 2.1E-10 4.5E-15 111.9 17.0 155 1-173 380-546 (667)
78 PRK06522 2-dehydropantoate 2-r 99.3 4E-10 8.7E-15 100.5 17.1 250 1-278 11-299 (304)
79 PF03721 UDPG_MGDP_dh_N: UDP-g 99.2 4.8E-11 1E-15 98.5 8.7 142 1-151 11-185 (185)
80 PRK08818 prephenate dehydrogen 99.2 4.9E-10 1.1E-14 101.6 15.1 149 1-177 16-168 (370)
81 KOG2666 UDP-glucose/GDP-mannos 99.2 9.1E-10 2E-14 94.9 15.5 222 14-262 27-290 (481)
82 PRK14806 bifunctional cyclohex 99.2 5.4E-10 1.2E-14 111.4 15.9 158 1-174 14-187 (735)
83 COG1250 FadB 3-hydroxyacyl-CoA 99.2 3E-10 6.5E-15 99.9 12.1 184 1-212 14-223 (307)
84 PLN02712 arogenate dehydrogena 99.1 1.3E-09 2.8E-14 106.4 16.3 158 1-175 63-231 (667)
85 PRK11730 fadB multifunctional 99.1 6.6E-10 1.4E-14 109.7 12.4 184 1-212 324-532 (715)
86 TIGR02437 FadB fatty oxidation 99.1 7E-10 1.5E-14 109.3 12.3 183 1-212 324-532 (714)
87 PRK05479 ketol-acid reductoiso 99.1 4.1E-09 8.9E-14 93.9 15.9 182 1-204 28-225 (330)
88 TIGR00745 apbA_panE 2-dehydrop 99.0 1.1E-08 2.5E-13 90.6 16.0 246 1-276 2-290 (293)
89 TIGR02441 fa_ox_alpha_mit fatt 99.0 1.4E-09 3E-14 107.5 10.7 179 1-208 346-550 (737)
90 TIGR02440 FadJ fatty oxidation 99.0 2.9E-09 6.2E-14 104.9 12.5 179 1-208 315-520 (699)
91 PRK11154 fadJ multifunctional 99.0 2.7E-09 5.8E-14 105.4 12.2 179 1-208 320-525 (708)
92 PRK06249 2-dehydropantoate 2-r 99.0 3.2E-08 6.9E-13 88.7 17.9 250 1-278 16-310 (313)
93 PF02737 3HCDH_N: 3-hydroxyacy 99.0 2E-10 4.2E-15 94.5 2.8 141 1-163 10-178 (180)
94 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 2.2E-10 4.7E-15 92.3 2.4 131 1-143 10-155 (157)
95 PF10727 Rossmann-like: Rossma 98.9 9E-10 1.9E-14 84.8 4.6 94 1-98 21-116 (127)
96 TIGR00465 ilvC ketol-acid redu 98.9 2.2E-08 4.7E-13 89.3 13.1 183 1-210 14-217 (314)
97 PF03807 F420_oxidored: NADP o 98.8 2.2E-09 4.7E-14 79.0 3.5 80 1-87 10-95 (96)
98 PF00984 UDPG_MGDP_dh: UDP-glu 98.8 1.5E-07 3.3E-12 68.8 11.1 93 166-274 2-94 (96)
99 KOG2304 3-hydroxyacyl-CoA dehy 98.7 7.8E-08 1.7E-12 79.5 7.5 186 1-213 22-238 (298)
100 COG4007 Predicted dehydrogenas 98.7 3.6E-06 7.8E-11 71.0 17.3 187 2-204 33-235 (340)
101 PRK05708 2-dehydropantoate 2-r 98.6 1.1E-06 2.3E-11 78.5 13.1 255 1-281 13-302 (305)
102 cd01065 NAD_bind_Shikimate_DH 98.6 1.4E-07 3E-12 75.6 6.1 94 1-102 30-130 (155)
103 COG1893 ApbA Ketopantoate redu 98.5 6.3E-06 1.4E-10 73.5 16.7 252 1-279 11-302 (307)
104 PRK13403 ketol-acid reductoiso 98.5 9.5E-06 2.1E-10 71.8 15.4 180 1-203 27-222 (335)
105 PRK07574 formate dehydrogenase 98.4 1E-06 2.2E-11 80.7 9.0 98 1-102 203-300 (385)
106 PLN03139 formate dehydrogenase 98.4 1.4E-06 3.1E-11 79.7 9.1 98 1-102 210-307 (386)
107 PRK06444 prephenate dehydrogen 98.4 2.1E-05 4.6E-10 65.4 15.1 118 1-177 12-134 (197)
108 PRK14194 bifunctional 5,10-met 98.3 1.9E-06 4.2E-11 75.7 7.2 63 1-88 171-233 (301)
109 PRK13243 glyoxylate reductase; 98.3 2.5E-06 5.4E-11 77.0 8.1 96 1-102 161-256 (333)
110 PRK06436 glycerate dehydrogena 98.3 2.7E-06 5.8E-11 75.6 7.5 92 1-102 133-225 (303)
111 KOG2305 3-hydroxyacyl-CoA dehy 98.3 3.9E-06 8.4E-11 69.7 7.7 185 1-215 14-229 (313)
112 PRK14188 bifunctional 5,10-met 98.2 3.7E-06 8.1E-11 74.0 7.3 63 1-89 170-233 (296)
113 PRK12480 D-lactate dehydrogena 98.2 5.3E-06 1.1E-10 74.8 8.3 94 1-102 157-250 (330)
114 KOG2380 Prephenate dehydrogena 98.2 2.5E-05 5.4E-10 68.6 11.8 145 1-163 63-219 (480)
115 PRK08605 D-lactate dehydrogena 98.2 6.3E-06 1.4E-10 74.4 7.8 95 1-102 157-252 (332)
116 KOG3124 Pyrroline-5-carboxylat 98.1 0.00017 3.6E-09 61.3 15.1 243 1-278 11-263 (267)
117 PF02826 2-Hacid_dh_C: D-isome 98.1 7.7E-06 1.7E-10 67.2 6.9 97 1-102 47-143 (178)
118 PRK15469 ghrA bifunctional gly 98.0 1.2E-05 2.6E-10 71.9 6.3 96 1-102 147-242 (312)
119 TIGR01327 PGDH D-3-phosphoglyc 98.0 1.8E-05 3.8E-10 75.9 7.7 97 1-102 149-245 (525)
120 PRK13581 D-3-phosphoglycerate 97.9 2.3E-05 4.9E-10 75.2 7.4 96 1-102 151-246 (526)
121 TIGR02853 spore_dpaA dipicolin 97.9 3.5E-05 7.7E-10 68.1 7.5 86 1-95 162-249 (287)
122 COG5495 Uncharacterized conser 97.9 0.00051 1.1E-08 57.4 13.5 177 5-202 21-207 (289)
123 PRK14179 bifunctional 5,10-met 97.8 5.7E-05 1.2E-09 66.1 6.9 64 1-89 170-233 (284)
124 PRK06141 ornithine cyclodeamin 97.8 3.1E-05 6.6E-10 69.5 4.7 90 1-101 136-233 (314)
125 PLN02928 oxidoreductase family 97.7 0.00012 2.5E-09 66.6 7.7 97 1-102 170-278 (347)
126 PF07991 IlvN: Acetohydroxy ac 97.6 8.7E-05 1.9E-09 59.0 5.0 76 2-84 16-93 (165)
127 PRK00257 erythronate-4-phospha 97.6 0.00014 3.1E-09 66.6 7.1 93 1-102 127-223 (381)
128 PRK13302 putative L-aspartate 97.6 0.00026 5.6E-09 62.1 7.6 93 1-102 17-114 (271)
129 COG0111 SerA Phosphoglycerate 97.6 0.00023 5E-09 63.8 7.3 97 1-102 153-249 (324)
130 PRK08306 dipicolinate synthase 97.5 0.00039 8.5E-09 61.8 8.2 83 1-92 163-247 (296)
131 TIGR00507 aroE shikimate 5-deh 97.5 0.00021 4.6E-09 62.7 6.4 94 1-102 128-228 (270)
132 cd01075 NAD_bind_Leu_Phe_Val_D 97.5 0.00047 1E-08 57.7 7.9 90 1-102 39-130 (200)
133 PRK11790 D-3-phosphoglycerate 97.4 0.00039 8.4E-09 64.6 7.4 94 1-102 162-255 (409)
134 COG1052 LdhA Lactate dehydroge 97.4 0.00072 1.6E-08 60.7 7.8 96 1-102 157-252 (324)
135 PRK15409 bifunctional glyoxyla 97.3 0.001 2.3E-08 59.8 7.8 96 1-102 156-252 (323)
136 PRK13304 L-aspartate dehydroge 97.2 0.001 2.2E-08 58.2 7.3 93 1-102 12-111 (265)
137 PRK11861 bifunctional prephena 97.2 0.0021 4.5E-08 63.7 9.8 120 50-185 1-132 (673)
138 PRK08410 2-hydroxyacid dehydro 97.2 0.001 2.2E-08 59.6 6.9 93 1-102 156-248 (311)
139 PRK15438 erythronate-4-phospha 97.2 0.0012 2.6E-08 60.5 7.3 93 1-102 127-223 (378)
140 PF00670 AdoHcyase_NAD: S-aden 97.2 0.0011 2.3E-08 53.1 5.9 80 2-91 35-115 (162)
141 TIGR01723 hmd_TIGR 5,10-methen 97.1 0.022 4.8E-07 49.2 13.9 115 33-164 126-241 (340)
142 TIGR02371 ala_DH_arch alanine 97.1 0.001 2.2E-08 60.0 6.3 80 2-91 140-227 (325)
143 PF00393 6PGD: 6-phosphoglucon 97.1 0.002 4.3E-08 56.4 7.1 102 168-276 1-113 (291)
144 KOG2711 Glycerol-3-phosphate d 97.0 0.0025 5.5E-08 56.4 7.7 269 1-297 32-368 (372)
145 PF02558 ApbA: Ketopantoate re 97.0 0.00092 2E-08 53.0 4.5 70 1-72 9-92 (151)
146 PRK06932 glycerate dehydrogena 97.0 0.0021 4.5E-08 57.6 7.2 92 1-102 158-249 (314)
147 PRK06487 glycerate dehydrogena 97.0 0.0022 4.8E-08 57.6 7.4 91 1-102 159-249 (317)
148 PRK00961 H(2)-dependent methyl 97.0 0.032 6.9E-07 48.1 13.5 114 33-164 128-243 (342)
149 PF01488 Shikimate_DH: Shikima 97.0 0.00067 1.5E-08 53.0 3.1 59 1-59 23-88 (135)
150 cd05213 NAD_bind_Glutamyl_tRNA 96.9 0.0022 4.8E-08 57.5 6.4 82 1-87 189-274 (311)
151 PLN02306 hydroxypyruvate reduc 96.8 0.0056 1.2E-07 56.4 7.9 98 1-102 176-288 (386)
152 PTZ00075 Adenosylhomocysteinas 96.7 0.0052 1.1E-07 57.6 7.6 80 1-89 265-344 (476)
153 KOG0069 Glyoxylate/hydroxypyru 96.7 0.0054 1.2E-07 54.8 7.4 97 1-102 173-269 (336)
154 PRK07340 ornithine cyclodeamin 96.7 0.0072 1.6E-07 54.0 8.0 81 1-92 136-223 (304)
155 PF03720 UDPG_MGDP_dh_C: UDP-g 96.7 0.0035 7.6E-08 46.7 5.0 81 3-88 20-103 (106)
156 PF10728 DUF2520: Domain of un 96.7 0.018 4E-07 44.7 9.1 68 135-206 3-73 (132)
157 PRK09310 aroDE bifunctional 3- 96.7 0.0053 1.1E-07 58.3 7.3 84 1-101 343-429 (477)
158 PRK06823 ornithine cyclodeamin 96.6 0.0029 6.3E-08 56.7 4.9 68 14-91 154-227 (315)
159 PF02423 OCD_Mu_crystall: Orni 96.6 0.0028 6.1E-08 56.8 4.7 69 15-91 155-229 (313)
160 PRK05476 S-adenosyl-L-homocyst 96.6 0.0085 1.8E-07 55.7 7.9 80 1-90 223-303 (425)
161 cd01078 NAD_bind_H4MPT_DH NADP 96.5 0.0065 1.4E-07 50.5 6.1 82 1-90 40-133 (194)
162 TIGR00936 ahcY adenosylhomocys 96.5 0.015 3.2E-07 53.8 8.8 88 1-98 206-295 (406)
163 PRK06407 ornithine cyclodeamin 96.5 0.0065 1.4E-07 54.2 6.3 67 15-91 144-217 (301)
164 PLN02494 adenosylhomocysteinas 96.5 0.011 2.3E-07 55.4 7.8 78 1-88 265-343 (477)
165 smart00859 Semialdhyde_dh Semi 96.5 0.0045 9.7E-08 47.3 4.5 83 1-89 11-102 (122)
166 TIGR02992 ectoine_eutC ectoine 96.4 0.01 2.2E-07 53.6 6.9 57 1-57 140-205 (326)
167 PRK09287 6-phosphogluconate de 96.4 0.019 4.2E-07 54.1 8.9 145 142-289 271-433 (459)
168 TIGR00873 gnd 6-phosphoglucona 96.3 0.023 5E-07 53.8 9.2 138 142-282 278-434 (467)
169 COG2423 Predicted ornithine cy 96.3 0.0072 1.6E-07 54.2 5.5 70 14-93 156-232 (330)
170 cd00401 AdoHcyase S-adenosyl-L 96.3 0.017 3.7E-07 53.6 7.9 77 1-87 213-290 (413)
171 PRK07589 ornithine cyclodeamin 96.2 0.0079 1.7E-07 54.5 5.3 70 14-91 155-230 (346)
172 PLN00203 glutamyl-tRNA reducta 96.1 0.0087 1.9E-07 57.2 5.3 57 1-57 277-340 (519)
173 PRK08618 ornithine cyclodeamin 96.1 0.017 3.6E-07 52.1 6.6 81 2-93 139-228 (325)
174 cd01080 NAD_bind_m-THF_DH_Cycl 96.0 0.016 3.5E-07 47.0 5.7 62 2-88 57-118 (168)
175 COG1748 LYS9 Saccharopine dehy 96.0 0.02 4.3E-07 52.5 6.6 60 1-60 12-82 (389)
176 PF02882 THF_DHG_CYH_C: Tetrah 95.9 0.045 9.7E-07 43.9 7.8 66 14-90 37-112 (160)
177 TIGR00518 alaDH alanine dehydr 95.9 0.015 3.2E-07 53.4 5.6 83 1-87 178-268 (370)
178 PRK06046 alanine dehydrogenase 95.9 0.021 4.5E-07 51.6 6.4 80 1-91 140-228 (326)
179 TIGR01035 hemA glutamyl-tRNA r 95.8 0.011 2.3E-07 55.3 4.5 58 1-58 191-252 (417)
180 PF01408 GFO_IDH_MocA: Oxidore 95.8 0.072 1.6E-06 40.2 8.3 94 2-103 12-112 (120)
181 cd05212 NAD_bind_m-THF_DH_Cycl 95.8 0.045 9.6E-07 43.0 7.1 66 13-89 28-103 (140)
182 PRK08291 ectoine utilization p 95.7 0.032 6.8E-07 50.5 6.6 56 2-57 144-208 (330)
183 PRK14175 bifunctional 5,10-met 95.6 0.041 8.8E-07 48.4 6.9 63 1-88 170-232 (286)
184 cd01079 NAD_bind_m-THF_DH NAD 95.5 0.047 1E-06 45.0 6.6 76 1-89 74-159 (197)
185 PRK14189 bifunctional 5,10-met 95.5 0.051 1.1E-06 47.8 7.2 62 2-88 171-232 (285)
186 PRK00045 hemA glutamyl-tRNA re 95.5 0.015 3.2E-07 54.5 4.1 59 1-59 193-255 (423)
187 PTZ00142 6-phosphogluconate de 95.5 0.12 2.7E-06 48.9 10.2 114 166-282 316-440 (470)
188 PRK13940 glutamyl-tRNA reducta 95.3 0.026 5.7E-07 52.5 5.1 58 1-58 192-254 (414)
189 COG0373 HemA Glutamyl-tRNA red 95.3 0.028 6.2E-07 51.8 5.1 57 1-57 189-249 (414)
190 TIGR01763 MalateDH_bact malate 95.3 0.056 1.2E-06 48.3 6.9 56 1-57 12-80 (305)
191 COG0569 TrkA K+ transport syst 95.3 0.032 6.9E-07 47.5 5.2 64 1-65 11-84 (225)
192 PRK06223 malate dehydrogenase; 95.2 0.056 1.2E-06 48.2 6.8 54 1-55 13-79 (307)
193 PRK04148 hypothetical protein; 95.2 0.094 2E-06 40.7 7.0 63 2-64 28-95 (134)
194 cd01339 LDH-like_MDH L-lactate 95.1 0.058 1.3E-06 48.0 6.5 55 1-56 9-76 (300)
195 PRK00258 aroE shikimate 5-dehy 95.1 0.036 7.9E-07 48.8 5.1 58 1-58 134-197 (278)
196 PRK10792 bifunctional 5,10-met 95.0 0.093 2E-06 46.1 7.3 62 2-88 172-233 (285)
197 PRK03659 glutathione-regulated 94.9 0.058 1.3E-06 52.9 6.3 64 1-64 411-482 (601)
198 COG0059 IlvC Ketol-acid reduct 94.8 0.062 1.3E-06 47.1 5.5 68 2-71 30-99 (338)
199 PRK00048 dihydrodipicolinate r 94.8 0.15 3.2E-06 44.4 8.0 90 1-98 13-104 (257)
200 PRK14170 bifunctional 5,10-met 94.8 0.12 2.6E-06 45.4 7.3 41 38-89 192-232 (284)
201 PRK12549 shikimate 5-dehydroge 94.8 0.049 1.1E-06 48.2 5.0 57 1-57 138-203 (284)
202 PF10100 DUF2338: Uncharacteri 94.8 3.3 7.3E-05 38.1 16.9 267 4-279 15-395 (429)
203 TIGR01921 DAP-DH diaminopimela 94.8 0.49 1.1E-05 42.4 11.2 76 1-87 14-92 (324)
204 PRK14186 bifunctional 5,10-met 94.7 0.12 2.7E-06 45.6 7.2 41 38-89 193-233 (297)
205 PRK14173 bifunctional 5,10-met 94.7 0.13 2.9E-06 45.2 7.2 41 38-89 190-230 (287)
206 PRK14169 bifunctional 5,10-met 94.6 0.13 2.8E-06 45.1 7.1 40 38-88 191-230 (282)
207 PRK14177 bifunctional 5,10-met 94.6 0.14 3.1E-06 44.9 7.3 41 38-89 194-234 (284)
208 PLN02516 methylenetetrahydrofo 94.6 0.13 2.9E-06 45.4 7.2 41 38-89 202-242 (299)
209 cd00650 LDH_MDH_like NAD-depen 94.5 0.099 2.1E-06 45.6 6.2 54 1-54 10-78 (263)
210 cd05291 HicDH_like L-2-hydroxy 94.5 0.062 1.3E-06 48.0 5.0 57 1-57 11-79 (306)
211 PF13460 NAD_binding_10: NADH( 94.5 0.05 1.1E-06 44.2 4.1 54 1-56 10-70 (183)
212 PRK06199 ornithine cyclodeamin 94.5 0.041 8.9E-07 50.6 3.9 43 15-57 183-234 (379)
213 PRK14166 bifunctional 5,10-met 94.5 0.15 3.3E-06 44.7 7.1 41 38-89 192-232 (282)
214 PRK10669 putative cation:proto 94.5 0.071 1.5E-06 51.8 5.7 63 1-63 428-498 (558)
215 PRK14180 bifunctional 5,10-met 94.4 0.15 3.3E-06 44.7 7.1 40 38-88 193-232 (282)
216 PRK14172 bifunctional 5,10-met 94.4 0.16 3.4E-06 44.6 7.1 41 38-89 193-233 (278)
217 PF07479 NAD_Gly3P_dh_C: NAD-d 94.4 0.0019 4.1E-08 51.3 -4.4 106 166-274 21-137 (149)
218 PRK14190 bifunctional 5,10-met 94.4 0.15 3.3E-06 44.8 6.9 62 2-88 171-232 (284)
219 TIGR01761 thiaz-red thiazoliny 94.4 0.48 1E-05 43.0 10.4 93 1-102 13-113 (343)
220 KOG1683 Hydroxyacyl-CoA dehydr 94.3 0.052 1.1E-06 48.7 4.0 69 1-70 1-94 (380)
221 PRK14187 bifunctional 5,10-met 94.3 0.17 3.7E-06 44.7 7.0 40 38-88 195-234 (294)
222 PRK14193 bifunctional 5,10-met 94.2 0.18 3.9E-06 44.3 7.2 42 37-89 194-235 (284)
223 TIGR03855 NAD_NadX aspartate d 94.2 0.15 3.2E-06 43.5 6.5 78 16-102 5-87 (229)
224 cd05297 GH4_alpha_glucosidase_ 94.2 0.053 1.2E-06 50.7 4.0 48 10-57 26-85 (423)
225 PRK14183 bifunctional 5,10-met 94.1 0.19 4.1E-06 44.1 7.0 41 38-89 192-232 (281)
226 PRK14176 bifunctional 5,10-met 94.1 0.2 4.4E-06 44.1 7.1 40 38-88 199-238 (287)
227 PRK14171 bifunctional 5,10-met 94.0 0.21 4.5E-06 44.0 7.1 40 38-88 194-233 (288)
228 PF01113 DapB_N: Dihydrodipico 94.0 0.18 4E-06 38.5 6.0 92 1-100 12-113 (124)
229 PRK14178 bifunctional 5,10-met 93.9 0.15 3.3E-06 44.6 6.1 65 13-88 152-226 (279)
230 TIGR01809 Shik-DH-AROM shikima 93.9 0.099 2.1E-06 46.2 5.0 58 1-58 136-202 (282)
231 PRK14182 bifunctional 5,10-met 93.8 0.23 4.9E-06 43.6 6.9 40 38-88 192-231 (282)
232 PLN02897 tetrahydrofolate dehy 93.8 0.22 4.7E-06 44.8 6.9 40 38-88 249-288 (345)
233 cd05292 LDH_2 A subgroup of L- 93.8 0.12 2.5E-06 46.3 5.3 57 1-57 11-78 (308)
234 PF02254 TrkA_N: TrkA-N domain 93.8 0.3 6.5E-06 36.5 6.9 63 1-63 9-79 (116)
235 PRK05225 ketol-acid reductoiso 93.8 0.062 1.3E-06 50.0 3.5 63 1-65 47-115 (487)
236 PLN02616 tetrahydrofolate dehy 93.6 0.25 5.5E-06 44.7 7.0 40 38-88 266-305 (364)
237 PRK14191 bifunctional 5,10-met 93.5 0.22 4.8E-06 43.8 6.3 39 39-88 193-231 (285)
238 PRK14181 bifunctional 5,10-met 93.4 0.3 6.5E-06 43.0 7.1 40 38-88 192-231 (287)
239 COG1712 Predicted dinucleotide 93.4 0.45 9.7E-06 40.1 7.5 52 14-66 26-79 (255)
240 COG1004 Ugd Predicted UDP-gluc 93.3 0.25 5.5E-06 45.1 6.5 61 3-64 333-393 (414)
241 PF13380 CoA_binding_2: CoA bi 93.3 0.1 2.2E-06 39.5 3.5 73 2-86 16-88 (116)
242 PRK03562 glutathione-regulated 93.1 0.23 4.9E-06 48.9 6.5 64 1-64 411-482 (621)
243 COG0190 FolD 5,10-methylene-te 93.1 0.49 1.1E-05 41.3 7.7 41 38-89 191-231 (283)
244 KOG3007 Mu-crystallin [Amino a 93.0 0.3 6.6E-06 42.1 6.2 43 15-57 166-218 (333)
245 PTZ00117 malate dehydrogenase; 93.0 0.29 6.3E-06 44.0 6.5 53 1-54 16-81 (319)
246 PRK14168 bifunctional 5,10-met 92.9 0.42 9E-06 42.3 7.2 40 38-88 200-239 (297)
247 PRK09496 trkA potassium transp 92.8 0.17 3.6E-06 47.7 4.9 58 1-58 11-77 (453)
248 CHL00194 ycf39 Ycf39; Provisio 92.8 0.21 4.6E-06 44.7 5.4 55 1-55 12-73 (317)
249 PRK14192 bifunctional 5,10-met 92.5 0.36 7.8E-06 42.6 6.3 62 2-88 172-233 (283)
250 COG0673 MviM Predicted dehydro 92.5 0.87 1.9E-05 41.0 9.1 91 4-102 18-116 (342)
251 PRK14185 bifunctional 5,10-met 92.4 0.5 1.1E-05 41.7 7.0 41 38-89 196-236 (293)
252 PRK14982 acyl-ACP reductase; P 92.4 0.31 6.8E-06 44.1 5.9 57 1-57 167-226 (340)
253 cd05191 NAD_bind_amino_acid_DH 92.4 0.39 8.5E-06 34.1 5.3 34 1-60 34-68 (86)
254 TIGR01019 sucCoAalpha succinyl 92.3 0.46 1E-05 42.0 6.7 91 2-102 19-112 (286)
255 PF01118 Semialdhyde_dh: Semia 92.3 0.078 1.7E-06 40.4 1.6 80 1-89 11-100 (121)
256 PRK05678 succinyl-CoA syntheta 92.0 0.49 1.1E-05 41.9 6.5 91 2-102 21-114 (291)
257 COG1090 Predicted nucleoside-d 91.9 0.25 5.5E-06 42.9 4.5 57 1-57 10-67 (297)
258 PRK12548 shikimate 5-dehydroge 91.8 0.34 7.4E-06 42.9 5.3 57 1-57 137-210 (289)
259 PRK14184 bifunctional 5,10-met 91.7 0.53 1.1E-05 41.5 6.3 39 38-87 196-234 (286)
260 PRK14167 bifunctional 5,10-met 91.6 0.69 1.5E-05 41.0 7.0 41 38-89 196-236 (297)
261 PF05368 NmrA: NmrA-like famil 91.6 0.4 8.6E-06 40.7 5.5 56 1-56 10-74 (233)
262 cd00300 LDH_like L-lactate deh 91.4 0.38 8.3E-06 42.9 5.2 56 1-57 9-77 (300)
263 PF03435 Saccharop_dh: Sacchar 91.3 0.29 6.2E-06 45.2 4.5 57 1-57 9-78 (386)
264 PRK08306 dipicolinate synthase 91.3 0.51 1.1E-05 42.0 5.9 50 4-56 16-65 (296)
265 TIGR00561 pntA NAD(P) transhyd 91.2 0.55 1.2E-05 44.8 6.3 53 2-54 176-255 (511)
266 TIGR00036 dapB dihydrodipicoli 91.1 1.3 2.7E-05 38.8 8.1 93 1-101 13-115 (266)
267 COG4074 Mth H2-forming N5,N10- 90.9 3.8 8.3E-05 34.5 10.1 63 33-100 126-188 (343)
268 COG0499 SAM1 S-adenosylhomocys 90.9 0.47 1E-05 42.8 5.1 76 2-86 221-296 (420)
269 TIGR01850 argC N-acetyl-gamma- 90.7 0.45 9.7E-06 43.3 5.1 80 1-89 12-102 (346)
270 PRK14174 bifunctional 5,10-met 90.5 0.9 2E-05 40.3 6.6 40 38-88 198-237 (295)
271 cd05311 NAD_bind_2_malic_enz N 90.4 1.1 2.3E-05 38.2 6.9 80 1-89 36-131 (226)
272 COG1064 AdhP Zn-dependent alco 90.4 0.89 1.9E-05 41.0 6.6 60 4-64 180-246 (339)
273 PF00056 Ldh_1_N: lactate/mala 89.9 0.36 7.8E-06 37.9 3.3 56 2-57 13-80 (141)
274 KOG1502 Flavonol reductase/cin 89.8 0.57 1.2E-05 42.0 4.8 54 1-54 18-86 (327)
275 COG4221 Short-chain alcohol de 89.8 0.77 1.7E-05 39.3 5.4 56 1-65 18-73 (246)
276 PF00107 ADH_zinc_N: Zinc-bind 89.2 0.72 1.6E-05 35.0 4.6 35 1-35 2-36 (130)
277 PF01262 AlaDh_PNT_C: Alanine 89.2 0.56 1.2E-05 37.9 4.1 82 2-87 32-140 (168)
278 COG0300 DltE Short-chain dehyd 89.1 0.45 9.8E-06 41.4 3.6 32 1-32 18-49 (265)
279 PRK00683 murD UDP-N-acetylmura 89.0 0.62 1.3E-05 43.5 4.7 57 1-57 14-70 (418)
280 TIGR03026 NDP-sugDHase nucleot 89.0 1.2 2.5E-05 41.6 6.5 56 3-62 336-391 (411)
281 PLN03209 translocon at the inn 88.9 0.67 1.5E-05 44.8 5.0 30 1-30 92-121 (576)
282 COG2910 Putative NADH-flavin r 88.8 0.66 1.4E-05 38.0 4.1 55 2-56 13-72 (211)
283 PRK00436 argC N-acetyl-gamma-g 88.4 0.72 1.6E-05 41.9 4.7 79 1-89 14-102 (343)
284 PRK13301 putative L-aspartate 88.4 2.3 5.1E-05 37.0 7.5 92 1-102 13-112 (267)
285 KOG1014 17 beta-hydroxysteroid 88.3 0.61 1.3E-05 41.2 3.9 32 1-32 61-92 (312)
286 PRK06182 short chain dehydroge 88.2 1.1 2.4E-05 38.9 5.6 31 1-31 15-45 (273)
287 TIGR02717 AcCoA-syn-alpha acet 88.1 2.3 5.1E-05 40.1 8.0 60 1-66 22-83 (447)
288 PTZ00082 L-lactate dehydrogena 87.9 0.84 1.8E-05 41.1 4.7 53 1-54 17-82 (321)
289 COG0169 AroE Shikimate 5-dehyd 87.9 0.92 2E-05 40.0 4.8 81 2-89 138-229 (283)
290 PLN02819 lysine-ketoglutarate 87.7 1.5 3.3E-05 45.5 6.9 59 1-59 580-661 (1042)
291 PRK06139 short chain dehydroge 87.7 0.9 1.9E-05 41.0 4.8 31 1-31 19-49 (330)
292 PF05222 AlaDh_PNT_N: Alanine 87.4 5.6 0.00012 30.9 8.5 84 5-102 19-106 (136)
293 TIGR01777 yfcH conserved hypot 87.4 0.67 1.5E-05 40.4 3.7 55 1-55 10-66 (292)
294 PRK06718 precorrin-2 dehydroge 87.2 1.3 2.8E-05 37.0 5.2 63 1-64 21-87 (202)
295 PRK13303 L-aspartate dehydroge 87.0 1.9 4.1E-05 37.7 6.2 93 1-102 12-111 (265)
296 PLN02353 probable UDP-glucose 86.7 2.1 4.5E-05 40.7 6.8 82 3-90 347-451 (473)
297 PRK06200 2,3-dihydroxy-2,3-dih 86.7 1.4 3.1E-05 37.9 5.4 31 1-31 18-48 (263)
298 TIGR03649 ergot_EASG ergot alk 86.6 0.87 1.9E-05 39.9 4.0 56 1-56 11-77 (285)
299 PRK00066 ldh L-lactate dehydro 86.6 1 2.2E-05 40.5 4.4 56 1-56 17-83 (315)
300 TIGR02354 thiF_fam2 thiamine b 86.4 1.9 4E-05 36.0 5.7 22 1-22 32-54 (200)
301 PRK12550 shikimate 5-dehydroge 86.4 1.5 3.2E-05 38.5 5.3 54 2-57 134-189 (272)
302 PRK15057 UDP-glucose 6-dehydro 86.4 1.6 3.6E-05 40.3 5.8 58 3-64 319-376 (388)
303 PRK06180 short chain dehydroge 86.4 1.5 3.2E-05 38.3 5.3 31 1-31 16-46 (277)
304 PRK09424 pntA NAD(P) transhydr 86.3 2.2 4.8E-05 40.9 6.7 34 2-35 177-210 (509)
305 TIGR03466 HpnA hopanoid-associ 86.2 0.85 1.8E-05 40.5 3.8 55 1-55 12-73 (328)
306 PRK05693 short chain dehydroge 86.0 2 4.4E-05 37.2 6.0 31 1-31 13-43 (274)
307 PRK14027 quinate/shikimate deh 86.0 1.6 3.5E-05 38.6 5.3 56 2-57 139-205 (283)
308 PLN02383 aspartate semialdehyd 85.8 0.75 1.6E-05 41.8 3.2 78 2-88 20-102 (344)
309 PRK06196 oxidoreductase; Provi 85.4 1.9 4.1E-05 38.5 5.6 31 1-31 38-68 (315)
310 PRK07109 short chain dehydroge 85.3 1.4 3E-05 39.8 4.7 30 1-30 20-49 (334)
311 PRK09496 trkA potassium transp 85.2 2.1 4.6E-05 40.2 6.1 57 1-57 242-308 (453)
312 PRK01390 murD UDP-N-acetylmura 85.1 2.2 4.9E-05 40.3 6.2 52 2-53 21-72 (460)
313 PRK05993 short chain dehydroge 85.0 1.4 3E-05 38.4 4.5 32 1-32 16-47 (277)
314 COG3967 DltE Short-chain dehyd 85.0 1.3 2.9E-05 37.0 3.9 32 1-32 17-48 (245)
315 PRK06719 precorrin-2 dehydroge 84.9 3.1 6.8E-05 33.2 6.1 98 2-102 25-142 (157)
316 PRK05866 short chain dehydroge 84.9 1.5 3.1E-05 38.8 4.6 31 1-31 52-82 (293)
317 COG0002 ArgC Acetylglutamate s 84.7 2.5 5.4E-05 38.1 5.8 79 2-89 15-104 (349)
318 PRK01710 murD UDP-N-acetylmura 84.6 9.2 0.0002 36.2 10.1 53 2-54 26-85 (458)
319 TIGR01771 L-LDH-NAD L-lactate 84.6 1.5 3.3E-05 39.0 4.6 56 1-56 7-74 (299)
320 COG2227 UbiG 2-polyprenyl-3-me 84.6 2.5 5.5E-05 36.1 5.5 79 2-89 70-163 (243)
321 PRK07825 short chain dehydroge 84.1 2 4.4E-05 37.2 5.1 31 1-31 17-47 (273)
322 COG4408 Uncharacterized protei 84.0 32 0.00069 31.0 15.3 234 38-279 77-397 (431)
323 PRK12429 3-hydroxybutyrate deh 84.0 1.5 3.2E-05 37.5 4.1 30 1-30 16-45 (258)
324 KOG2741 Dimeric dihydrodiol de 83.8 12 0.00027 33.7 9.8 83 12-102 31-121 (351)
325 PRK10538 malonic semialdehyde 83.8 2.1 4.5E-05 36.5 5.0 31 1-31 12-42 (248)
326 PRK06124 gluconate 5-dehydroge 83.7 1.9 4.1E-05 36.9 4.7 30 1-30 23-52 (256)
327 PLN02968 Probable N-acetyl-gam 83.7 1.8 3.9E-05 40.0 4.7 78 2-89 51-137 (381)
328 PRK14106 murD UDP-N-acetylmura 83.6 2.4 5.2E-05 39.9 5.7 56 1-56 16-78 (450)
329 TIGR01851 argC_other N-acetyl- 83.6 2.5 5.4E-05 37.7 5.4 67 1-87 13-81 (310)
330 PRK11064 wecC UDP-N-acetyl-D-m 83.5 2.6 5.7E-05 39.4 5.8 58 3-62 343-401 (415)
331 PRK11579 putative oxidoreducta 83.4 11 0.00025 34.0 9.9 86 7-102 22-113 (346)
332 PRK08177 short chain dehydroge 83.4 2.5 5.3E-05 35.5 5.2 30 1-30 13-42 (225)
333 PLN02780 ketoreductase/ oxidor 83.3 1.4 3E-05 39.6 3.8 31 1-31 65-95 (320)
334 PRK08643 acetoin reductase; Va 83.2 1.7 3.8E-05 37.1 4.3 30 1-30 14-43 (256)
335 PRK03369 murD UDP-N-acetylmura 83.1 3.1 6.7E-05 39.8 6.3 54 2-55 24-79 (488)
336 PLN00141 Tic62-NAD(P)-related 82.9 2.7 5.9E-05 36.0 5.4 29 1-29 29-57 (251)
337 KOG0068 D-3-phosphoglycerate d 82.9 4.5 9.8E-05 36.4 6.6 95 1-102 157-252 (406)
338 PF02056 Glyco_hydro_4: Family 82.8 1.1 2.3E-05 36.8 2.6 43 15-57 30-84 (183)
339 cd05293 LDH_1 A subgroup of L- 82.7 2.3 4.9E-05 38.1 4.9 55 1-56 14-81 (312)
340 PRK06349 homoserine dehydrogen 82.6 6.4 0.00014 36.9 8.0 57 1-57 14-83 (426)
341 PLN02350 phosphogluconate dehy 82.3 6.7 0.00014 37.5 8.1 114 167-283 326-450 (493)
342 PRK08339 short chain dehydroge 82.3 1.8 3.9E-05 37.4 4.1 30 1-30 20-49 (263)
343 PLN02520 bifunctional 3-dehydr 82.1 2.6 5.7E-05 40.7 5.4 57 1-57 390-450 (529)
344 PF13561 adh_short_C2: Enoyl-( 82.1 1.4 3.1E-05 37.4 3.3 26 1-26 8-33 (241)
345 PRK08213 gluconate 5-dehydroge 81.8 2.1 4.5E-05 36.8 4.2 30 1-30 24-53 (259)
346 cd05294 LDH-like_MDH_nadp A la 81.6 2.8 6E-05 37.5 5.0 55 1-56 12-82 (309)
347 PRK12828 short chain dehydroge 81.5 4.4 9.5E-05 33.9 6.1 57 1-66 19-75 (239)
348 PRK02472 murD UDP-N-acetylmura 81.5 2.8 6.1E-05 39.4 5.3 54 1-54 16-76 (447)
349 PRK05875 short chain dehydroge 81.5 2.9 6.3E-05 36.2 5.1 30 1-30 19-48 (276)
350 PRK07666 fabG 3-ketoacyl-(acyl 81.3 3.1 6.7E-05 35.2 5.0 30 1-30 19-48 (239)
351 PF08546 ApbA_C: Ketopantoate 81.2 3.7 8E-05 31.1 5.0 85 179-275 37-123 (125)
352 PRK06101 short chain dehydroge 81.1 2 4.4E-05 36.5 3.8 32 1-32 13-44 (240)
353 PRK07060 short chain dehydroge 81.1 3 6.5E-05 35.2 4.9 31 1-31 21-51 (245)
354 PRK05653 fabG 3-ketoacyl-(acyl 81.0 2.9 6.3E-05 35.2 4.8 30 1-30 17-46 (246)
355 TIGR02356 adenyl_thiF thiazole 81.0 4 8.6E-05 34.1 5.5 24 1-24 32-56 (202)
356 TIGR03215 ac_ald_DH_ac acetald 80.8 5.7 0.00012 35.1 6.5 80 1-89 12-98 (285)
357 PRK08265 short chain dehydroge 80.5 2.1 4.6E-05 36.9 3.8 31 1-31 18-48 (261)
358 PLN02662 cinnamyl-alcohol dehy 80.4 4.4 9.4E-05 36.0 5.9 55 1-55 16-85 (322)
359 PRK08862 short chain dehydroge 80.4 2.4 5.1E-05 35.9 4.0 31 1-31 17-47 (227)
360 PRK14874 aspartate-semialdehyd 80.1 1.6 3.4E-05 39.6 3.0 78 2-88 14-96 (334)
361 PRK05884 short chain dehydroge 80.1 2.2 4.8E-05 35.9 3.7 31 1-31 12-42 (223)
362 PLN02650 dihydroflavonol-4-red 80.1 3.8 8.2E-05 37.1 5.5 54 1-54 17-85 (351)
363 PRK10206 putative oxidoreducta 80.0 12 0.00026 34.0 8.7 82 13-102 27-113 (344)
364 cd01487 E1_ThiF_like E1_ThiF_l 80.0 5.2 0.00011 32.5 5.7 23 1-23 10-33 (174)
365 PRK06482 short chain dehydroge 79.9 3.4 7.3E-05 35.9 4.9 31 1-31 14-44 (276)
366 PF03447 NAD_binding_3: Homose 79.9 3.4 7.5E-05 30.9 4.4 63 1-64 5-76 (117)
367 PRK08268 3-hydroxy-acyl-CoA de 79.8 6.8 0.00015 37.7 7.3 65 140-212 389-453 (507)
368 PRK12749 quinate/shikimate deh 79.8 4.2 9.1E-05 36.0 5.5 56 2-57 136-207 (288)
369 cd05290 LDH_3 A subgroup of L- 79.7 2.8 6.1E-05 37.5 4.4 56 1-56 10-78 (307)
370 PRK00421 murC UDP-N-acetylmura 79.5 3.9 8.4E-05 38.7 5.5 53 2-54 19-74 (461)
371 PRK08589 short chain dehydroge 79.5 3.2 7E-05 36.0 4.7 28 1-29 18-45 (272)
372 PRK08340 glucose-1-dehydrogena 79.5 2.6 5.6E-05 36.2 4.0 30 1-30 12-41 (259)
373 PRK12829 short chain dehydroge 79.4 3.8 8.2E-05 35.1 5.1 31 1-31 23-53 (264)
374 TIGR03325 BphB_TodD cis-2,3-di 79.3 2.6 5.5E-05 36.3 4.0 31 1-31 17-47 (262)
375 TIGR02415 23BDH acetoin reduct 79.2 2.9 6.3E-05 35.6 4.3 30 1-30 12-41 (254)
376 TIGR01082 murC UDP-N-acetylmur 79.1 4 8.7E-05 38.5 5.5 53 2-54 11-66 (448)
377 PF04016 DUF364: Domain of unk 79.1 1.5 3.3E-05 34.6 2.2 49 4-54 22-70 (147)
378 PRK08263 short chain dehydroge 79.1 3 6.6E-05 36.2 4.4 31 1-31 15-45 (275)
379 PLN02686 cinnamoyl-CoA reducta 79.0 3.4 7.3E-05 37.8 4.8 29 1-29 65-93 (367)
380 PF00393 6PGD: 6-phosphoglucon 78.9 4.9 0.00011 35.5 5.5 140 139-283 112-262 (291)
381 TIGR02279 PaaC-3OHAcCoADH 3-hy 78.9 19 0.0004 34.7 9.9 64 141-212 389-452 (503)
382 TIGR03366 HpnZ_proposed putati 78.8 8.1 0.00017 33.7 7.0 35 1-35 132-167 (280)
383 PRK08300 acetaldehyde dehydrog 78.7 9.5 0.00021 34.0 7.3 80 1-89 15-104 (302)
384 PRK07063 short chain dehydroge 78.7 2.8 6.1E-05 35.9 4.0 31 1-31 19-49 (260)
385 PRK00141 murD UDP-N-acetylmura 78.6 4.2 9.1E-05 38.7 5.5 52 2-53 27-81 (473)
386 PRK07984 enoyl-(acyl carrier p 78.5 3.4 7.3E-05 35.9 4.5 23 1-23 20-42 (262)
387 PLN02989 cinnamyl-alcohol dehy 78.5 4.5 9.8E-05 36.0 5.4 55 1-55 17-86 (325)
388 PRK05867 short chain dehydroge 78.4 2.7 5.9E-05 35.9 3.8 30 1-30 21-50 (253)
389 PRK05472 redox-sensing transcr 78.4 1.6 3.4E-05 36.7 2.3 56 2-58 96-158 (213)
390 PLN02427 UDP-apiose/xylose syn 78.4 3.4 7.4E-05 38.0 4.7 54 1-54 26-94 (386)
391 TIGR02853 spore_dpaA dipicolin 78.1 2.8 6.1E-05 37.1 3.9 50 4-56 15-64 (287)
392 PRK08017 oxidoreductase; Provi 77.9 3.3 7.2E-05 35.3 4.2 31 1-31 14-44 (256)
393 COG1063 Tdh Threonine dehydrog 77.8 7.1 0.00015 35.5 6.5 63 2-64 181-256 (350)
394 PRK07478 short chain dehydroge 77.8 3.1 6.7E-05 35.5 4.0 30 1-30 18-47 (254)
395 TIGR01081 mpl UDP-N-acetylmura 77.6 5 0.00011 37.8 5.6 52 3-54 13-68 (448)
396 PRK12475 thiamine/molybdopteri 77.5 5.6 0.00012 36.1 5.7 24 1-24 35-59 (338)
397 PRK06179 short chain dehydroge 77.5 2 4.4E-05 37.0 2.8 26 1-26 16-41 (270)
398 COG0677 WecC UDP-N-acetyl-D-ma 77.3 5.8 0.00013 36.5 5.6 79 4-91 346-425 (436)
399 PRK07024 short chain dehydroge 77.3 3.1 6.7E-05 35.7 3.9 31 1-31 14-44 (257)
400 PRK08085 gluconate 5-dehydroge 77.2 3.3 7.1E-05 35.4 4.0 30 1-30 21-50 (254)
401 PRK07890 short chain dehydroge 77.1 3.5 7.5E-05 35.2 4.1 30 1-30 17-46 (258)
402 PRK07062 short chain dehydroge 76.8 3.4 7.3E-05 35.5 4.0 30 1-30 20-49 (265)
403 TIGR01296 asd_B aspartate-semi 76.7 1.5 3.3E-05 39.8 1.8 77 2-87 12-93 (339)
404 COG0702 Predicted nucleoside-d 76.7 5.7 0.00012 34.1 5.4 54 1-55 12-72 (275)
405 PRK07814 short chain dehydroge 76.6 3.5 7.6E-05 35.5 4.0 30 1-30 22-51 (263)
406 PRK08267 short chain dehydroge 76.6 3.5 7.6E-05 35.3 4.0 31 1-31 13-43 (260)
407 PRK07067 sorbitol dehydrogenas 76.6 3.5 7.6E-05 35.3 4.0 31 1-31 18-48 (257)
408 PRK05855 short chain dehydroge 76.4 3.2 6.9E-05 40.1 4.1 30 1-30 327-356 (582)
409 PRK08644 thiamine biosynthesis 76.3 6.7 0.00015 33.0 5.5 23 1-23 39-62 (212)
410 PRK15076 alpha-galactosidase; 76.3 2.8 6E-05 39.4 3.4 46 12-57 29-86 (431)
411 PRK07326 short chain dehydroge 76.3 3.8 8.3E-05 34.4 4.1 30 1-30 18-47 (237)
412 COG0451 WcaG Nucleoside-diphos 76.2 2.9 6.3E-05 36.8 3.5 54 1-54 12-72 (314)
413 PRK07523 gluconate 5-dehydroge 76.1 3.7 8E-05 35.1 4.0 30 1-30 22-51 (255)
414 PLN02986 cinnamyl-alcohol dehy 76.1 6.2 0.00013 35.1 5.6 55 1-55 17-86 (322)
415 PRK08945 putative oxoacyl-(acy 75.9 3.8 8.2E-05 34.8 4.0 30 1-30 24-53 (247)
416 COG0686 Ald Alanine dehydrogen 75.9 3.3 7.2E-05 36.8 3.6 79 4-87 182-269 (371)
417 PRK06720 hypothetical protein; 75.9 4.2 9.1E-05 32.8 4.0 29 1-29 28-56 (169)
418 PRK05854 short chain dehydroge 75.7 3.5 7.6E-05 36.7 3.9 30 1-30 26-55 (313)
419 PRK09291 short chain dehydroge 75.7 5.2 0.00011 34.1 4.8 31 1-31 14-44 (257)
420 PRK07102 short chain dehydroge 75.6 3.7 7.9E-05 34.8 3.8 30 1-30 13-42 (243)
421 PRK07231 fabG 3-ketoacyl-(acyl 75.4 4.1 8.8E-05 34.5 4.1 30 1-30 17-46 (251)
422 PRK04207 glyceraldehyde-3-phos 75.4 6.9 0.00015 35.5 5.7 59 1-59 12-91 (341)
423 PRK08277 D-mannonate oxidoredu 75.4 3.7 8E-05 35.6 3.9 30 1-30 22-51 (278)
424 PLN02602 lactate dehydrogenase 75.4 4.4 9.6E-05 36.9 4.4 55 1-56 48-115 (350)
425 PLN02214 cinnamoyl-CoA reducta 75.4 4.9 0.00011 36.3 4.8 55 1-55 22-90 (342)
426 PRK07454 short chain dehydroge 75.3 4 8.7E-05 34.5 4.0 30 1-30 18-47 (241)
427 PRK05876 short chain dehydroge 75.1 4.1 9E-05 35.5 4.1 30 1-30 18-47 (275)
428 PRK06194 hypothetical protein; 75.0 4 8.7E-05 35.6 4.0 30 1-30 18-47 (287)
429 PRK08703 short chain dehydroge 75.0 4.3 9.2E-05 34.3 4.1 30 1-30 18-47 (239)
430 PRK06953 short chain dehydroge 74.8 4.6 0.0001 33.7 4.2 31 1-31 13-43 (222)
431 PRK09072 short chain dehydroge 74.7 4.2 9.1E-05 34.9 4.0 31 1-31 17-47 (263)
432 PRK07856 short chain dehydroge 74.7 4.4 9.6E-05 34.5 4.1 25 1-25 18-42 (252)
433 PRK08251 short chain dehydroge 74.3 4.2 9E-05 34.5 3.9 30 1-30 14-43 (248)
434 PRK06914 short chain dehydroge 74.3 4.3 9.3E-05 35.2 4.0 31 1-31 15-45 (280)
435 PRK07074 short chain dehydroge 74.2 4.4 9.6E-05 34.6 4.0 31 1-31 14-44 (257)
436 PRK11863 N-acetyl-gamma-glutam 74.1 3.1 6.8E-05 37.2 3.1 68 2-88 15-83 (313)
437 PRK08264 short chain dehydroge 74.0 8.7 0.00019 32.3 5.8 28 1-28 18-46 (238)
438 PRK07889 enoyl-(acyl carrier p 73.9 7.4 0.00016 33.4 5.4 30 1-30 21-52 (256)
439 PLN02657 3,8-divinyl protochlo 73.7 2.4 5.3E-05 39.2 2.4 26 1-26 72-97 (390)
440 PRK06398 aldose dehydrogenase; 73.6 4.1 8.9E-05 35.0 3.7 25 1-25 18-42 (258)
441 PRK07424 bifunctional sterol d 73.5 6.1 0.00013 36.8 4.9 28 1-28 190-217 (406)
442 PRK10569 NAD(P)H-dependent FMN 73.4 23 0.0005 29.2 7.9 62 4-65 22-90 (191)
443 PLN02896 cinnamyl-alcohol dehy 73.3 6 0.00013 35.8 4.8 29 1-29 22-50 (353)
444 PRK08309 short chain dehydroge 73.3 4.9 0.00011 32.7 3.9 31 1-31 11-41 (177)
445 PRK07677 short chain dehydroge 73.1 5 0.00011 34.2 4.1 30 1-30 13-42 (252)
446 TIGR01832 kduD 2-deoxy-D-gluco 73.0 7.9 0.00017 32.8 5.3 23 1-23 17-39 (248)
447 PRK05872 short chain dehydroge 73.0 4.6 9.9E-05 35.6 3.9 31 1-31 21-51 (296)
448 PRK06172 short chain dehydroge 72.9 5.1 0.00011 34.1 4.1 30 1-30 19-48 (253)
449 PRK09186 flagellin modificatio 72.8 5.1 0.00011 34.1 4.0 30 1-30 16-45 (256)
450 KOG4230 C1-tetrahydrofolate sy 72.7 9.9 0.00022 36.7 6.0 42 37-89 196-237 (935)
451 PLN02253 xanthoxin dehydrogena 72.6 5 0.00011 34.8 4.0 30 1-30 30-59 (280)
452 PRK11908 NAD-dependent epimera 72.5 6.1 0.00013 35.6 4.7 53 1-53 13-75 (347)
453 PRK05568 flavodoxin; Provision 72.4 41 0.0009 25.8 10.3 80 3-102 20-108 (142)
454 cd01483 E1_enzyme_family Super 72.2 23 0.00049 27.4 7.3 104 1-124 10-124 (143)
455 PF13450 NAD_binding_8: NAD(P) 72.2 5 0.00011 27.0 3.1 23 2-24 8-30 (68)
456 PRK06949 short chain dehydroge 72.0 5.1 0.00011 34.1 3.9 31 1-31 21-51 (258)
457 PRK09880 L-idonate 5-dehydroge 71.9 17 0.00036 32.7 7.4 34 2-35 182-216 (343)
458 PRK06057 short chain dehydroge 71.8 5.5 0.00012 34.0 4.0 31 1-31 19-49 (255)
459 KOG1200 Mitochondrial/plastidi 71.7 5.5 0.00012 33.1 3.6 31 1-31 26-56 (256)
460 PRK07453 protochlorophyllide o 71.6 5.1 0.00011 35.8 3.9 31 1-31 18-48 (322)
461 PRK06114 short chain dehydroge 71.6 6.5 0.00014 33.6 4.4 24 1-24 20-43 (254)
462 PRK06505 enoyl-(acyl carrier p 71.5 5.5 0.00012 34.6 4.0 25 1-25 21-45 (271)
463 TIGR01214 rmlD dTDP-4-dehydror 71.4 5.5 0.00012 34.7 4.0 47 1-55 11-59 (287)
464 PRK12367 short chain dehydroge 71.2 6 0.00013 33.9 4.1 23 1-23 26-48 (245)
465 PRK12939 short chain dehydroge 71.2 5.8 0.00012 33.5 4.0 30 1-30 19-48 (250)
466 PRK07774 short chain dehydroge 71.2 5.5 0.00012 33.8 3.9 30 1-30 18-47 (250)
467 PRK13394 3-hydroxybutyrate deh 71.2 5.3 0.00012 34.1 3.8 31 1-31 19-49 (262)
468 PRK03803 murD UDP-N-acetylmura 71.1 7.9 0.00017 36.5 5.2 53 2-54 18-76 (448)
469 PRK12384 sorbitol-6-phosphate 71.0 5.5 0.00012 34.1 3.9 30 1-30 14-43 (259)
470 PRK06125 short chain dehydroge 71.0 5.9 0.00013 33.9 4.0 30 1-30 19-48 (259)
471 PRK07831 short chain dehydroge 70.9 6 0.00013 34.0 4.1 30 1-30 30-59 (262)
472 KOG1207 Diacetyl reductase/L-x 70.6 7.4 0.00016 31.7 4.1 32 1-32 19-50 (245)
473 PRK07041 short chain dehydroge 70.5 6.3 0.00014 33.0 4.0 30 1-30 9-38 (230)
474 TIGR02622 CDP_4_6_dhtase CDP-g 70.4 6.4 0.00014 35.6 4.3 26 1-26 16-41 (349)
475 TIGR01963 PHB_DH 3-hydroxybuty 70.4 6.2 0.00013 33.5 4.0 31 1-31 13-43 (255)
476 PF01073 3Beta_HSD: 3-beta hyd 70.2 5.5 0.00012 35.0 3.7 54 1-54 9-74 (280)
477 COG0771 MurD UDP-N-acetylmuram 70.0 7.6 0.00016 36.6 4.7 53 2-54 19-77 (448)
478 cd08230 glucose_DH Glucose deh 70.0 13 0.00029 33.5 6.4 34 2-35 185-221 (355)
479 PRK02006 murD UDP-N-acetylmura 69.7 8.9 0.00019 36.7 5.3 52 2-53 19-76 (498)
480 PLN02583 cinnamoyl-CoA reducta 69.7 6.9 0.00015 34.5 4.3 23 1-23 18-40 (297)
481 TIGR00477 tehB tellurite resis 69.7 8.1 0.00018 31.9 4.5 27 4-30 43-69 (195)
482 KOG0725 Reductases with broad 69.6 6.7 0.00014 34.4 4.1 31 1-31 20-50 (270)
483 PRK07035 short chain dehydroge 69.5 6.6 0.00014 33.4 4.0 30 1-30 20-49 (252)
484 cd00704 MDH Malate dehydrogena 69.5 5 0.00011 36.2 3.3 56 1-56 12-86 (323)
485 PRK06138 short chain dehydroge 69.5 6.6 0.00014 33.3 4.0 30 1-30 17-46 (252)
486 PRK12826 3-ketoacyl-(acyl-carr 69.2 7 0.00015 33.0 4.1 29 1-29 18-46 (251)
487 PRK06500 short chain dehydroge 69.2 6.8 0.00015 33.1 4.0 30 1-30 18-47 (249)
488 PRK09242 tropinone reductase; 69.2 6.7 0.00015 33.5 4.0 30 1-30 21-50 (257)
489 PF02629 CoA_binding: CoA bind 69.2 2.8 6.2E-05 30.3 1.4 63 2-66 15-81 (96)
490 TIGR01759 MalateDH-SF1 malate 69.1 7.8 0.00017 34.9 4.5 56 1-56 15-89 (323)
491 PRK07832 short chain dehydroge 69.1 6.7 0.00015 33.9 4.0 30 1-30 12-41 (272)
492 PRK05671 aspartate-semialdehyd 69.1 3.9 8.5E-05 37.0 2.6 77 2-89 17-100 (336)
493 PRK07576 short chain dehydroge 69.0 6.4 0.00014 33.9 3.9 29 1-29 21-49 (264)
494 cd01336 MDH_cytoplasmic_cytoso 68.9 7 0.00015 35.3 4.1 56 1-56 14-88 (325)
495 PRK06079 enoyl-(acyl carrier p 68.9 7 0.00015 33.5 4.0 23 1-23 21-43 (252)
496 TIGR03589 PseB UDP-N-acetylglu 68.7 8.7 0.00019 34.4 4.8 54 1-54 16-82 (324)
497 PRK12743 oxidoreductase; Provi 68.6 8.5 0.00018 32.9 4.5 29 1-29 14-43 (256)
498 PF03848 TehB: Tellurite resis 68.6 6.8 0.00015 32.5 3.7 26 6-31 45-70 (192)
499 TIGR03206 benzo_BadH 2-hydroxy 68.5 6.8 0.00015 33.2 3.9 30 1-30 15-44 (250)
500 PRK06463 fabG 3-ketoacyl-(acyl 68.5 13 0.00029 31.6 5.8 29 1-29 19-48 (255)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.5e-56 Score=386.37 Aligned_cols=275 Identities=40% Similarity=0.640 Sum_probs=260.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||.+||++|.++||+|++|||++++ .+.+.+.|+..+.++.|+++++|+||+|||++.++++|+.+..+++++ .++|
T Consensus 11 MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~--~~~G 88 (286)
T COG2084 11 MGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEG--LKPG 88 (286)
T ss_pred hhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhc--CCCC
Confidence 9999999999999999999999999 666667799999999999999999999999999999999988888876 5678
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCe
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 159 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~ 159 (300)
+++||+||++|..++++++.+.+. |.+|+|+||+|++..+..|++++++||+++.|++++++|+.+|.++
T Consensus 89 ~i~IDmSTisp~~a~~~a~~~~~~----------G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i 158 (286)
T COG2084 89 AIVIDMSTISPETARELAAALAAK----------GLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNI 158 (286)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhc----------CCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCce
Confidence 999999999999999999999863 3799999999999999999999999999999999999999999999
Q ss_pred EeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022237 160 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239 (300)
Q Consensus 160 ~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (300)
+++|+.|.++.+|+++|.+.+.++.+++|++.+++++|+|++.+.++++.+.+.||.++++.+ ++.+++|+|+
T Consensus 159 ~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~-------~m~~~~~~p~ 231 (286)
T COG2084 159 VHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP-------RMLEGDFSPG 231 (286)
T ss_pred EEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc-------hhhcCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999887653 3568899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHh
Q 022237 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 294 (300)
Q Consensus 240 ~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 294 (300)
|.++++.||++++.+++++.|+++|+...+.++|+.+.++|+|++|++++++.|+
T Consensus 232 F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 232 FAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999874
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=1.7e-53 Score=360.19 Aligned_cols=280 Identities=49% Similarity=0.752 Sum_probs=262.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++|+.+|.++||.|++|||+.+++++|.+.|++.+.+|.|+++.+|+||+|||++.++++++....+++++ .++++
T Consensus 46 MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g--~~~g~ 123 (327)
T KOG0409|consen 46 MGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSG--IRPGK 123 (327)
T ss_pred chHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceee--ccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888876 33444
Q ss_pred EE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCe
Q 022237 81 LL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 159 (300)
Q Consensus 81 iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~ 159 (300)
.. ||+||++|.+++++++.+..+ +.+|+|+||+|+...++.|+++|++|||++.++++.++|+.+|+++
T Consensus 124 ~~~vDmSTidp~~s~ei~~~i~~~----------~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~ 193 (327)
T KOG0409|consen 124 KATVDMSTIDPDTSLEIAKAISNK----------GGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNV 193 (327)
T ss_pred ceEEeccccCHHHHHHHHHHHHhC----------CCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceE
Confidence 44 999999999999999998763 2699999999999999999999999999999999999999999999
Q ss_pred EeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022237 160 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239 (300)
Q Consensus 160 ~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (300)
+++|..|.++.+|+|+|.+.+..|..++|++.|+++.|+|+..++++++.+. .|.+..++|+|+++ +++|.|+
T Consensus 194 ~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~--~~S~~~~~~~p~m~-----k~dy~p~ 266 (327)
T KOG0409|consen 194 VFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGR--CWSSMFYNPVPGML-----KGDYNPG 266 (327)
T ss_pred EEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC--cccHHHhCcCchhh-----cCCCCCc
Confidence 9999999999999999999999999999999999999999999999999854 45556778888865 5799999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcCCCC
Q 022237 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 299 (300)
Q Consensus 240 ~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 299 (300)
|.++++.||++++...++..+.|+|+...+.++|+.+.+.|+|+.|++++|++++..++.
T Consensus 267 f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 267 FALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred chHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999887764
No 3
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=7.2e-49 Score=347.15 Aligned_cols=281 Identities=48% Similarity=0.800 Sum_probs=257.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|.++||+|++|||++++++.+.+.|+..+.++.++++++|+||+|||++.++++++....++.+. .++++
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~--~~~g~ 84 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK--VAKGS 84 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc--CCCCC
Confidence 8999999999999999999999999999999998888899999999999999999987889998654445543 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++.+.+.++ +++|+|+|++|++..+..|++++++||+++.+++++++|+.+|++++
T Consensus 85 ~vid~st~~p~~~~~~~~~~~~~----------g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~ 154 (288)
T TIGR01692 85 LLIDCSTIDPDSARKLAELAAAH----------GAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIV 154 (288)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999988752 37899999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.++.+|+++|++.+.++.+++|++.+++++|+|+++++++++.+.+.+|....+.+.+++....+.+++|+++|
T Consensus 155 ~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f 234 (288)
T TIGR01692 155 HCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGF 234 (288)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999888887776666555554445678999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
++..+.||++++.+++++.|+++|+.+.+.++|+.+.++|+|++|++++++++
T Consensus 235 ~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 235 GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999976
No 4
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=7.6e-49 Score=346.41 Aligned_cols=275 Identities=33% Similarity=0.506 Sum_probs=252.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+|+++|.++||+|++|||++. .+++.+.|+..+.++.++++++|+||+|||++.++++++....++++. ..+|+
T Consensus 11 MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~--~~~g~ 87 (292)
T PRK15059 11 MGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKA--SLKGK 87 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhcc--CCCCC
Confidence 899999999999999999999985 577777888888899999999999999999999999998765556554 45679
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++.+.+.++ ++.|+|+|++|++..+..|++++++||+++.+++++++|+.+|.+++
T Consensus 88 ivvd~sT~~p~~~~~~~~~~~~~----------G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~ 157 (292)
T PRK15059 88 TIVDMSSISPIETKRFARQVNEL----------GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNIT 157 (292)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcE
Confidence 99999999999999999998753 37899999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|+++.+|+++|++.+.++.++.|++.+++++|+|+++++++++.+.+.||.++.+.+ ++.+++|+++|
T Consensus 158 ~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f 230 (292)
T PRK15059 158 LVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGE-------RMIKRTFNPGF 230 (292)
T ss_pred EeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------hhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888887665543 25578999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
+++.+.||++++.+++++.|+++|+.+.+.++|+.+.++|+|++|++++++++.+
T Consensus 231 ~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 231 KIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALEL 285 (292)
T ss_pred chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998765
No 5
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-47 Score=338.60 Aligned_cols=277 Identities=30% Similarity=0.453 Sum_probs=252.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++||.+|+++||+|++|||++++.+++.+.|+..+.++.++++++|+||+|+|++.+++.++....+++.. .++++
T Consensus 12 mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~--l~~g~ 89 (296)
T PRK15461 12 MGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEG--LSRDA 89 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhc--CCCCC
Confidence 8999999999999999999999999999999898888899999999999999999998899998776666554 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
++||+||++|.+++++.+.+.++ ++.|+|+|++|++..+..|++++++||+++.+++++++|+.+|.+++
T Consensus 90 lvid~sT~~p~~~~~l~~~l~~~----------g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~ 159 (296)
T PRK15461 90 LVIDMSTIHPLQTDKLIADMQAK----------GFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELI 159 (296)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeE
Confidence 99999999999999999988753 27899999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.|+.+|+++|++...++.+++|++.+++++|+|++.++++++.+...++..... .+ .++.+++|+++|
T Consensus 160 ~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~--~~----~~~~~~~~~~~f 233 (296)
T PRK15461 160 NAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTT--WP----NKVLKGDLSPAF 233 (296)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHcc--cc----chhccCCCCCCc
Confidence 999999999999999999999999999999999999999999999999876555443322 11 125678999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
+++.+.||++++.+++++.|+++|+.+.+.++|+.++++|+|++|++++++++.+
T Consensus 234 ~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 234 MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998865
No 6
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=2.7e-44 Score=318.65 Aligned_cols=277 Identities=36% Similarity=0.539 Sum_probs=250.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||.+|+++||+|++|||++++.+.+.+.|...+.++.++++++|+||+|+|++.+++.++....+++.. .++++
T Consensus 10 mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~--~~~g~ 87 (291)
T TIGR01505 10 MGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEG--AKPGK 87 (291)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhc--CCCCC
Confidence 8999999999999999999999999999999888888899999999999999999988888887543334433 35668
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||+.|.+.+++.+.+.+. +++|+++|+++++..+..+++.+++||+++.+++++++++.++.+++
T Consensus 88 iivd~st~~~~~~~~l~~~l~~~----------g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~ 157 (291)
T TIGR01505 88 TLVDMSSISPIESKRFAKAVKEK----------GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIV 157 (291)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999988752 37999999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.++.+|+++|++.+.++.+++|++.+++++|+|++++.++++.+.+.+|.++...+ ++.+++|.++|
T Consensus 158 ~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f 230 (291)
T TIGR01505 158 LVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------RVIDRTFKPGF 230 (291)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------hhhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999988877776554322 24578999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcC
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 296 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (300)
+++++.||+.++.+++++.|+++|+.+.+.++|+.+.++|+|++|++++++++.+.
T Consensus 231 ~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 286 (291)
T TIGR01505 231 RIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELL 286 (291)
T ss_pred chHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998654
No 7
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.3e-44 Score=370.71 Aligned_cols=278 Identities=22% Similarity=0.381 Sum_probs=257.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|.++||+|++|||++++++++.+.|+..++++.|++++||+||+|||++.++++|+.+..+++++ ..+|+
T Consensus 15 MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~--l~~g~ 92 (1378)
T PLN02858 15 LSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKG--LQKGA 92 (1378)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhc--CCCcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999776667765 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++++.+.++ ++ ++.|+|+|++|++..+..|++++|+||+++.+++++++|+.+|.+++
T Consensus 93 iivd~STi~p~~~~~la~~l~~~-----g~---~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~ 164 (1378)
T PLN02858 93 VILIRSTILPLQLQKLEKKLTER-----KE---QIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY 164 (1378)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc-----CC---ceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence 99999999999999999998753 10 16899999999999999999999999999999999999999999987
Q ss_pred ee-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022237 161 YC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239 (300)
Q Consensus 161 ~~-g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (300)
++ |+.|+|+.+|+++|++.+.++.++.|++.+++++|+|++.++++++.+++.||.+..+.+ . +.+++|.++
T Consensus 165 ~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~--~-----~~~~d~~~~ 237 (1378)
T PLN02858 165 TFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVP--L-----LLKDDYIEG 237 (1378)
T ss_pred EecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhh--H-----hhcCCCCCC
Confidence 65 889999999999999999999999999999999999999999999999999888665432 2 457899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 240 ~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
|+++.+.||++++.+++++.|+++|+...+.++|+.+.+.|+|++|++++++++.+
T Consensus 238 F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 238 RFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998854
No 8
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.2e-43 Score=315.30 Aligned_cols=276 Identities=35% Similarity=0.504 Sum_probs=250.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|++|++.|++|++|||++++.+++.+.|...+.++.++++++|+||+|+|++.+++.++....++++. .++++
T Consensus 13 mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~--~~~g~ 90 (296)
T PRK11559 13 MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEG--AKPGT 90 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhc--CCCCc
Confidence 7999999999999999999999999999988888888899999999999999999988888887654444443 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|+|+||++|.+++++.+.+.+. +++|+++|++++++.+..+++.+++||+++.+++++++|+.++.+++
T Consensus 91 iiid~st~~~~~~~~l~~~~~~~----------g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~ 160 (296)
T PRK11559 91 VVIDMSSIAPLASREIAAALKAK----------GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV 160 (296)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999988652 37899999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.|+.+|+++|++.+.++.+++|++.++++.|+|++++.++++.+.+.|+.++.+.+ ++..++|.++|
T Consensus 161 ~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~d~~~~f 233 (296)
T PRK11559 161 HTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPGF 233 (296)
T ss_pred EeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch-------HhhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999988877776554432 24567999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
+++...||++++.+++++.|+++|+++.+.++|+.+.+.|+|++|++++++++.+
T Consensus 234 ~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 234 RIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998865
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.6e-42 Score=355.43 Aligned_cols=278 Identities=26% Similarity=0.411 Sum_probs=254.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|+++||+|++|||++++++.+.+.|+..+.++.++++++|+||+|||++.++++|+....++++. ..+|+
T Consensus 335 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~--l~~g~ 412 (1378)
T PLN02858 335 MGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSA--LPAGA 412 (1378)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhc--CCCCC
Confidence 8999999999999999999999999999999998888899999999999999999999999998765566654 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++++.+.+. .. +++|+|+|++|++..+..|++++++||+++.+++++++|+.+|.+++
T Consensus 413 ivVd~STvsP~~~~~la~~l~~~----g~----g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 413 SIVLSSTVSPGFVIQLERRLENE----GR----DIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred EEEECCCCCHHHHHHHHHHHHhh----CC----CcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEE
Confidence 99999999999999999988641 12 38999999999999999999999999999999999999999999988
Q ss_pred ee-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022237 161 YC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239 (300)
Q Consensus 161 ~~-g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (300)
++ |++|+|+.+|+++|++.+.++.+++|++.+++++|+|+++++++++.+.+.||.+..+. +. +.+++|+++
T Consensus 485 ~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~--~~-----~l~~d~~~~ 557 (1378)
T PLN02858 485 VIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRV--PH-----MLDNDYTPY 557 (1378)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhcc--ch-----hhcCCCCCC
Confidence 75 56999999999999999999999999999999999999999999999998888766443 22 457899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 240 ~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
|+++.+.||++++.+++++.|+++|+...+.++|+.+.++|+|++|++++++++.+
T Consensus 558 f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 558 SALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998864
No 10
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=1.7e-39 Score=301.82 Aligned_cols=255 Identities=19% Similarity=0.246 Sum_probs=222.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCC---CCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVP---TKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~---~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
||.+||++|+++||+|++|||++++++++.+. |+. .+.+++|+++. +|+||+|||++.++++|+.+ +
T Consensus 17 MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~g---l 93 (493)
T PLN02350 17 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKA---L 93 (493)
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHH---H
Confidence 99999999999999999999999999998764 543 67899999876 99999999999999999843 4
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHH
Q 022237 71 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 150 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ 150 (300)
++. ..+|++|||+||+.|.+++++.+.+.++ |++|+++||+|++..+..|+ ++|+||++++++++++
T Consensus 94 ~~~--l~~G~iiID~sT~~~~~t~~~~~~l~~~----------Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~p 160 (493)
T PLN02350 94 SEY--MEPGDCIIDGGNEWYENTERRIKEAAEK----------GLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIED 160 (493)
T ss_pred Hhh--cCCCCEEEECCCCCHHHHHHHHHHHHHc----------CCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHH
Confidence 443 3467899999999999999999988753 38999999999999999999 9999999999999999
Q ss_pred HHHhcCC------CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HHhcCCCccccccC
Q 022237 151 LFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---LNSSSARCWSSDSY 220 (300)
Q Consensus 151 ll~~lg~------~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~---~~~~~~~s~~~~~~ 220 (300)
+|+.++. .++|+|+.|+|+.+|+++|.+.+..+.+++|++.++++ .|+|++++.++ ++.+.+.||+.+..
T Consensus 161 vL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~ 240 (493)
T PLN02350 161 ILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEIT 240 (493)
T ss_pred HHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHH
Confidence 9999995 48999999999999999999999999999999999999 59999999998 56777788876654
Q ss_pred CCCCCcccCCCCCC-CCCCCcchhhHHHHHH------HHHHHHHHcCCCchH-HHHHHHHHHHHHH
Q 022237 221 NPVPGVMEGVPASR-NYGGGFASKLMAKDLN------LALASAKEVGVDCPL-TSQAQDIYAKLCE 278 (300)
Q Consensus 221 ~~~~~~~~~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~~~-~~~~~~~~~~a~~ 278 (300)
.+. +..+ +|.++|.++...||+. ...+.+.++|+|+|+ ..++..++.+..+
T Consensus 241 ~~~-------l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 241 ADI-------FSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred HHH-------HhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 331 2233 4877899999999999 899999999999999 6677776655543
No 11
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=1.1e-39 Score=289.85 Aligned_cols=268 Identities=19% Similarity=0.266 Sum_probs=236.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||.+|+++|.++|++|++|||++++++.+.+.|+..+.++++++++ +|+||+|+|++..+++++.+ +.+. ..
T Consensus 11 mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~---i~~~--l~ 85 (299)
T PRK12490 11 MGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKD---LYPL--LS 85 (299)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHH---Hhcc--CC
Confidence 8999999999999999999999999999988898888899998876 69999999999888888854 3332 24
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCC
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 157 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~ 157 (300)
++++|||+||++|.+++++.+.+.++ +++|+|+|++|++..+..|+ ++++||+++++++++++|+.+|.
T Consensus 86 ~g~ivid~st~~~~~~~~~~~~~~~~----------g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 86 PGDIVVDGGNSRYKDDLRRAEELAER----------GIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAP 154 (299)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHc----------CCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999999988652 37999999999999999998 89999999999999999999997
Q ss_pred ---CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcC-CCccccccCCCCCCcccCCC
Q 022237 158 ---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP 231 (300)
Q Consensus 158 ---~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 231 (300)
+++|+|++|.++.+|+++|++.+.++.+++|++.++++.| +|+++++++++.++ +.|++++...+ . +
T Consensus 155 ~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~--~-----~ 227 (299)
T PRK12490 155 EGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVK--A-----L 227 (299)
T ss_pred cCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHH--H-----H
Confidence 7899999999999999999999999999999999999999 99999999999654 77777664433 1 2
Q ss_pred CCCCCCCCcchhhHHHHH---HHHHHHHHHcCCCchHHHHHH-HHHHHHHHcCCCCCchHHHHHHH
Q 022237 232 ASRNYGGGFASKLMAKDL---NLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 232 ~~~~~~~~~~~~~~~kd~---~~~~~~a~~~g~~~~~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
.++++ .+.++...||+ +++++++++.|+|+|++..+. .++....++|.|.+|++++.+++
T Consensus 228 ~~~~~--~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 291 (299)
T PRK12490 228 AEDPK--LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQF 291 (299)
T ss_pred hhCCC--hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhh
Confidence 23332 35789999998 899999999999999999996 99999999999999999999976
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=4.3e-37 Score=273.51 Aligned_cols=267 Identities=18% Similarity=0.258 Sum_probs=229.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||.+||++|+++||+|++|||++++.+++.+.|+..+.+++++++. +|+||+|+|++..+++++.. +.+. ..
T Consensus 11 MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~---l~~~--l~ 85 (301)
T PRK09599 11 MGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDE---LAPL--LS 85 (301)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHH---HHhh--CC
Confidence 8999999999999999999999999999998898888899998875 69999999998788888754 3322 24
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCC
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 157 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~ 157 (300)
+++++||+||+.|..++++.+.+.+. +++|+|+|++|++..+..|. ++++||+++++++++++|+.++.
T Consensus 86 ~g~ivid~st~~~~~~~~~~~~~~~~----------g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 86 PGDIVIDGGNSYYKDDIRRAELLAEK----------GIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAP 154 (301)
T ss_pred CCCEEEeCCCCChhHHHHHHHHHHHc----------CCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcc
Confidence 56899999999999999999888752 38999999999999999996 89999999999999999999998
Q ss_pred ----CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCC
Q 022237 158 ----NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS--LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 230 (300)
Q Consensus 158 ----~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~--~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~ 230 (300)
+++++|+.|+++.+|+++|++.+..+.+++|++.++++ +|+|+++++++++.++ +.|++++...+.
T Consensus 155 ~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~------- 227 (301)
T PRK09599 155 RAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADA------- 227 (301)
T ss_pred cccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHH-------
Confidence 89999999999999999999999999999999999999 9999999999999876 577776644321
Q ss_pred CCCCCCCCCcc-hhhHHHH---HHHHHHHHHHcCCCchHHHHHH-HHHHHHHHcCCCCCchHHHHHHH
Q 022237 231 PASRNYGGGFA-SKLMAKD---LNLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 231 ~~~~~~~~~~~-~~~~~kd---~~~~~~~a~~~g~~~~~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
+ .++ +.|. +....|| ++++.+.+.+.++++|.+.++. ..+....++|.+..|++++.+++
T Consensus 228 ~-~~~--~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 228 L-AED--PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred H-hcC--CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 1 122 2232 3334555 5899999999999999999955 46999999999999999999975
No 13
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=8.7e-35 Score=269.18 Aligned_cols=247 Identities=21% Similarity=0.259 Sum_probs=207.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCCCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||.+||++|+++||+|.+|||++++.+++.+. |+..+.+++|+++. +|+||+|||++.++++|+.+ +++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~---l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQ---LLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHH---HHh
Confidence 99999999999999999999999999999874 47788899999875 89999999999999999854 443
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
. ..+|++|||+||+.|..++++.+.+.++ |++|+++||+|++..+..|. ++|+||+++++++++++|
T Consensus 78 ~--l~~GdiiID~gn~~~~~t~~~~~~l~~~----------Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL 144 (459)
T PRK09287 78 L--LEKGDIIIDGGNSNYKDTIRREKELAEK----------GIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPIL 144 (459)
T ss_pred c--CCCCCEEEECCCCCHHHHHHHHHHHHhc----------CCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHH
Confidence 3 3456899999999999999999888752 38999999999999999998 999999999999999999
Q ss_pred HhcCCCe-------EeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccCC
Q 022237 153 LSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYN 221 (300)
Q Consensus 153 ~~lg~~~-------~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~ 221 (300)
+.++.++ +|+|+.|+|+.+||++|.+.++.+++++|++.+++ +.|++++++.+++ +.+.+.||+.+...
T Consensus 145 ~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~ 224 (459)
T PRK09287 145 EKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITA 224 (459)
T ss_pred HHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHh
Confidence 9999886 89999999999999999999999999999999999 5899999999888 57778888876543
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHH-------HHHHHHHHHHHcCCCchHHHHHH
Q 022237 222 PVPGVMEGVPASRNYGGGFASKLMAK-------DLNLALASAKEVGVDCPLTSQAQ 270 (300)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~k-------d~~~~~~~a~~~g~~~~~~~~~~ 270 (300)
+. +..+|+..+..+--... .-+...+.+-++|+|.|.+....
T Consensus 225 ~~-------l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~Av 273 (459)
T PRK09287 225 DI-------LRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAV 273 (459)
T ss_pred HH-------HhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHH
Confidence 31 33455533222111111 22677788899999999887543
No 14
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=7e-32 Score=250.78 Aligned_cols=252 Identities=20% Similarity=0.254 Sum_probs=204.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHhh---cCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g--~~~~~~~~e~~~---~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||++||++|+++||+|++|||++++++++.+. | +..+.+++|+++ ++|+||+|||++..+++++.++.+.+
T Consensus 12 MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L 91 (470)
T PTZ00142 12 MGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLL 91 (470)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhC
Confidence 89999999999999999999999999998764 5 335779999986 48999999999999999986543333
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHH
Q 022237 72 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 151 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~l 151 (300)
.+|++|||+||..+..++++.+.+.++ |++|+++|++|++..+..|. ++|+||+++++++++++
T Consensus 92 -----~~g~iIID~gn~~~~dt~~r~~~l~~~----------Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~pi 155 (470)
T PTZ00142 92 -----EKGDIIIDGGNEWYLNTERRIKRCEEK----------GILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDI 155 (470)
T ss_pred -----CCCCEEEECCCCCHHHHHHHHHHHHHc----------CCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHH
Confidence 456899999999999999998888752 38999999999999999999 89999999999999999
Q ss_pred HHhcCCC------eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccCC
Q 022237 152 FLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYN 221 (300)
Q Consensus 152 l~~lg~~------~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~ 221 (300)
|+.++.+ ++|+|+.|+++.+||++|.+.++.+++++|++.+++ +.|++++++.+++ +.+...||+.+...
T Consensus 156 L~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~ 235 (470)
T PTZ00142 156 LEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITA 235 (470)
T ss_pred HHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 9999987 799999999999999999999999999999999998 7999999998888 46677788766432
Q ss_pred CCCCcccCCCCCCCCCC-CcchhhH------HHHHHHHHHHHHHcCCCchHHHHHH-HHHHH
Q 022237 222 PVPGVMEGVPASRNYGG-GFASKLM------AKDLNLALASAKEVGVDCPLTSQAQ-DIYAK 275 (300)
Q Consensus 222 ~~~~~~~~~~~~~~~~~-~~~~~~~------~kd~~~~~~~a~~~g~~~~~~~~~~-~~~~~ 275 (300)
.. + ...|-.. ++-++.. .-.-+...+.+-++|+|.|.+..+. .++.+
T Consensus 236 ~~---~----~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S 290 (470)
T PTZ00142 236 KI---L----AKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNIS 290 (470)
T ss_pred HH---h----hcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhh
Confidence 21 1 0111011 1112111 1123677888999999999988654 44433
No 15
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=3.5e-32 Score=241.48 Aligned_cols=246 Identities=22% Similarity=0.302 Sum_probs=208.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHh---hcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA---EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~---~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||.+|+++|.++||+|.+|||++++++++.+.|.....++.++. +++|+||+|||++ .+++++.++.+. ..
T Consensus 11 mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~~l~~~-----l~ 84 (298)
T TIGR00872 11 MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLEELAPT-----LE 84 (298)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHHHHHhh-----CC
Confidence 89999999999999999999999999999998877777777654 4689999999998 999998654332 34
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCC
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 157 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~ 157 (300)
++++|||+||+.|..+.++.+.+.+. +++|+++|++|++..+..| +.+++||+++.+++++++|+.++.
T Consensus 85 ~g~ivid~st~~~~~t~~~~~~~~~~----------g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 85 KGDIVIDGGNSYYKDSLRRYKLLKEK----------GIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAP 153 (298)
T ss_pred CCCEEEECCCCCcccHHHHHHHHHhc----------CCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999988887652 3799999999999999999 589999999999999999999986
Q ss_pred ---CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCC
Q 022237 158 ---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP 231 (300)
Q Consensus 158 ---~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~--Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 231 (300)
.++|+|+.|+++.+|+++|.+.+..+.+++|++.++++. |+|++++.++++.++ ..||+++..... .
T Consensus 154 ~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~-------~ 226 (298)
T TIGR00872 154 EEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIA-------F 226 (298)
T ss_pred cCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHH-------H
Confidence 589999999999999999999999999999999999998 579999999999887 578876644321 1
Q ss_pred CCCCCCCCcchh-hHHHHHHHHHHHHHHcCCCchHHHHHH
Q 022237 232 ASRNYGGGFASK-LMAKDLNLALASAKEVGVDCPLTSQAQ 270 (300)
Q Consensus 232 ~~~~~~~~~~~~-~~~kd~~~~~~~a~~~g~~~~~~~~~~ 270 (300)
.++++.+.|... ...+|.+.+...+.+.|+|+|.+.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al 266 (298)
T TIGR00872 227 RESPDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSL 266 (298)
T ss_pred hcCCcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHH
Confidence 223333445433 466788999999999999999999854
No 16
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=1.6e-31 Score=248.44 Aligned_cols=251 Identities=19% Similarity=0.262 Sum_probs=201.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---C--CCCCCCHHHHhh---cCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---G--VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~---g--~~~~~~~~e~~~---~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||.+||++|+++||+|++|||++++++++.+. | +..+.+++++++ .+|+||+|||++..+++|+.++.+.
T Consensus 10 MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~-- 87 (467)
T TIGR00873 10 MGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPL-- 87 (467)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhh--
Confidence 89999999999999999999999999999876 2 456678888764 6899999999988999998643322
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
..++++|||+||+.|..+++..+.+.+. +++|+++|++|++..+..|. ++|+||+++++++++++|
T Consensus 88 ---L~~g~iIID~gns~~~~t~~~~~~l~~~----------gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L 153 (467)
T TIGR00873 88 ---LEKGDIIIDGGNSHYPDTERRYKELKAK----------GILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIF 153 (467)
T ss_pred ---CCCCCEEEECCCcCHHHHHHHHHHHHhc----------CCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHH
Confidence 3456899999999999988888877642 38999999999999999998 999999999999999999
Q ss_pred HhcCCC------eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccCCC
Q 022237 153 LSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYNP 222 (300)
Q Consensus 153 ~~lg~~------~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~~ 222 (300)
+.++.+ ++|+|+.|+|+.+||++|.+.+..+++++|++.+++ +.|++++++.+++ +.+.+.||+.+...+
T Consensus 154 ~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~ 233 (467)
T TIGR00873 154 QKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITAD 233 (467)
T ss_pred HHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHH
Confidence 999987 489999999999999999999999999999999985 7999999999988 677778888765433
Q ss_pred CCCcccCCCCCCCCCCCcchhh------HHHHHHHHHHHHHHcCCCchHHHHHH-HHHH
Q 022237 223 VPGVMEGVPASRNYGGGFASKL------MAKDLNLALASAKEVGVDCPLTSQAQ-DIYA 274 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~------~~kd~~~~~~~a~~~g~~~~~~~~~~-~~~~ 274 (300)
. +. ++|-...+-++. -.-.-+...+.+-++|+|.|.+.... .++.
T Consensus 234 ~--~~-----~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~ 285 (467)
T TIGR00873 234 I--LK-----KKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYL 285 (467)
T ss_pred H--Hh-----ccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhc
Confidence 2 11 111111111111 01123677888899999999888553 4433
No 17
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.97 E-value=8.9e-30 Score=235.83 Aligned_cols=246 Identities=16% Similarity=0.192 Sum_probs=193.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-------------------CC-CCCCCCHHHHhhcCCEEEEecCChhh-
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDVVITMLPSSSH- 59 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~~~e~~~~adiVii~vp~~~~- 59 (300)
||.++|..|+++||+|++||+++++++.+++ .| +..+.++.++++++|+||+|||++..
T Consensus 11 ~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvii~vpt~~~~ 90 (411)
T TIGR03026 11 VGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVIIICVPTPLKE 90 (411)
T ss_pred hhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEEEEeCCCCCC
Confidence 8999999999999999999999999988764 13 44556788889999999999998843
Q ss_pred --------hhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhc
Q 022237 60 --------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 131 (300)
Q Consensus 60 --------~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~ 131 (300)
+.+++.+ +.+. .+++++||++||++|.+++++.+.+.+. ..|. ..+.+.|+.++|..+..
T Consensus 91 ~~~~d~~~v~~~~~~---i~~~--l~~g~lvi~~STv~pgt~~~l~~~~~~~----~~g~---~~~~d~~v~~~Pe~~~~ 158 (411)
T TIGR03026 91 DGSPDLSYVESAAET---IAKH--LRKGATVVLESTVPPGTTEEVVKPILER----ASGL---KLGEDFYLAYNPEFLRE 158 (411)
T ss_pred CCCcChHHHHHHHHH---HHHh--cCCCCEEEEeCcCCCCchHHHHHHHHHh----hcCC---CCCCCceEEECCCcCCC
Confidence 5555433 3322 2456899999999999999987554331 0110 01233444444444444
Q ss_pred Cce--------EEEeccCHHHHHHHHHHHHhcC-CCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022237 132 GTL--------TFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 202 (300)
Q Consensus 132 g~~--------~~~~~g~~~~~~~~~~ll~~lg-~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~ 202 (300)
|+. .+++|++++.+++++++|+.++ ..++++++++.++.+|+++|++.+.++++++|+..+|++.|+|+++
T Consensus 159 G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~ 238 (411)
T TIGR03026 159 GNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYE 238 (411)
T ss_pred CChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 554 7888899999999999999998 5788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022237 203 LTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 276 (300)
Q Consensus 203 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a 276 (300)
+.++++.+. ++..+.|.|+ |...++.||+.++...+++.|+++|+++++.++-+..
T Consensus 239 v~~~~~~~~------------------~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 239 VIEAAGTDP------------------RIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQ 296 (411)
T ss_pred HHHHhCCCC------------------CCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999987541 0223455564 4667899999999999999999999999998864443
No 18
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.96 E-value=3.8e-29 Score=202.98 Aligned_cols=151 Identities=42% Similarity=0.651 Sum_probs=133.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|.++||+|++|||++++++++.+.|+..+.|+.|+++++|+||+|||++.++++++.+.. +++. ..+|+
T Consensus 12 mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i~~~--l~~g~ 88 (163)
T PF03446_consen 12 MGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-ILAG--LRPGK 88 (163)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-HGGG--S-TTE
T ss_pred HHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-Hhhc--cccce
Confidence 89999999999999999999999999999999999999999999999999999999999999998755 5554 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++++.+.+. +++|+|+|++|+++.+..|++++++||+++++++++++|+.++.+++
T Consensus 89 iiid~sT~~p~~~~~~~~~~~~~----------g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 89 IIIDMSTISPETSRELAERLAAK----------GVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp EEEE-SS--HHHHHHHHHHHHHT----------TEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEE
T ss_pred EEEecCCcchhhhhhhhhhhhhc----------cceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCce
Confidence 99999999999999999998753 38999999999999999999999999999999999999999999998
Q ss_pred -eeCC
Q 022237 161 -YCGG 164 (300)
Q Consensus 161 -~~g~ 164 (300)
++|+
T Consensus 159 ~~~G~ 163 (163)
T PF03446_consen 159 HYVGP 163 (163)
T ss_dssp EE-ES
T ss_pred eeeCc
Confidence 4575
No 19
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=5e-27 Score=192.77 Aligned_cols=253 Identities=22% Similarity=0.329 Sum_probs=206.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhh---cCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~---~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||..|.++|.+.||+|.+||+|++.++++...|+..++|+.+.++ ...+|.++||....+..+++++.+.++
T Consensus 11 MG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~----- 85 (300)
T COG1023 11 MGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLS----- 85 (300)
T ss_pred hhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcC-----
Confidence 899999999999999999999999999999999998999888764 689999999998788888887666664
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCC
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 157 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~ 157 (300)
.|.+|||-.++....+++..+.+.++ +++|+|+-.+|+...++.|. .+|+||+++++++++++|+.+..
T Consensus 86 ~GDivIDGGNS~y~Ds~rr~~~l~~k----------gi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 86 AGDIVIDGGNSNYKDSLRRAKLLAEK----------GIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAP 154 (300)
T ss_pred CCCEEEECCccchHHHHHHHHHHHhc----------CCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCc
Confidence 45899999999999999988888763 38999999999999999998 89999999999999999999976
Q ss_pred ---CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCC
Q 022237 158 ---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP 231 (300)
Q Consensus 158 ---~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~--Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 231 (300)
-..|+|+.|+++.+||++|-+.++.|++++|.+.+.++. .+|.+++.++++.++ ..||+++..... +.+
T Consensus 155 ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~A--f~~--- 229 (300)
T COG1023 155 GEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEA--FKK--- 229 (300)
T ss_pred CcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHH--Hhh---
Confidence 467999999999999999999999999999999999986 477889999999998 689986532110 000
Q ss_pred CCCCCCCCcchhhHHH---HHHHHHHHHHHcCCCchHHHHHH-HHHHHHHH
Q 022237 232 ASRNYGGGFASKLMAK---DLNLALASAKEVGVDCPLTSQAQ-DIYAKLCE 278 (300)
Q Consensus 232 ~~~~~~~~~~~~~~~k---d~~~~~~~a~~~g~~~~~~~~~~-~~~~~a~~ 278 (300)
..+++. +.-... +=+..++.+-++|+|.|++.... ..|++-.+
T Consensus 230 -d~~L~q---~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~ 276 (300)
T COG1023 230 -DPDLDQ---ISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQD 276 (300)
T ss_pred -CCCHHH---hcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccch
Confidence 001100 000000 11455677889999999988554 66666544
No 20
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.94 E-value=2.1e-25 Score=206.09 Aligned_cols=246 Identities=15% Similarity=0.159 Sum_probs=185.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-CCHHHH---------------hhcCCEEEEecCCh-------
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ETPFEV---------------AEASDVVITMLPSS------- 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~~~~e~---------------~~~adiVii~vp~~------- 57 (300)
||.++|.+|+++||+|++||+++++++.++....... ..+++. +++||+||+|||++
T Consensus 14 ~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~~ 93 (415)
T PRK11064 14 IGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHEP 93 (415)
T ss_pred hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcCCCCCCCCCc
Confidence 8999999999999999999999999998654322111 122222 34899999999997
Q ss_pred --hhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhh----hccCCCCCceEEEec--cCCChHhh
Q 022237 58 --SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK----EKKDSWENPVMLDAP--VSGGVLAA 129 (300)
Q Consensus 58 --~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p--v~g~~~~~ 129 (300)
..+.+++.+ +.+. .++|++||++||++|.+++++...+.+.+.. ..+|....++++.+| +..+....
T Consensus 94 dl~~v~~~~~~---i~~~--l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~ 168 (415)
T PRK11064 94 DLTYVEAAAKS---IAPV--LKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMV 168 (415)
T ss_pred ChHHHHHHHHH---HHHh--CCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhh
Confidence 456655543 3332 3567899999999999999998877653100 000111236778899 55555555
Q ss_pred hcCceEEEecc-CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 130 EAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 130 ~~g~~~~~~~g-~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
..+++..++|| +++.+++++++|+.++..++++++++.|+.+|+++|++.+.++++++|+..+|++.|+|++++.++++
T Consensus 169 ~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 169 ELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred hhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 56666778898 99999999999999998888999999999999999999999999999999999999999999999987
Q ss_pred hcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 022237 209 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 272 (300)
Q Consensus 209 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~ 272 (300)
....- ....| .+||...|..||...+.. +.+.+.++++++.++
T Consensus 249 ~~~ri----~~l~p--------------G~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~ 291 (415)
T PRK11064 249 RHPRV----NILQP--------------GPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREV 291 (415)
T ss_pred cCCCc----ccCCC--------------CCCCCCccccccHHHHHH---hcCCccHHHHHHHHH
Confidence 54311 11122 235556788999987743 556678888888765
No 21
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.94 E-value=6.8e-26 Score=209.34 Aligned_cols=246 Identities=13% Similarity=0.151 Sum_probs=184.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC----------------CCCCHHHHhhcCCEEEEecCCh------h
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----------------TKETPFEVAEASDVVITMLPSS------S 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~----------------~~~~~~e~~~~adiVii~vp~~------~ 58 (300)
||.++|.+|++ ||+|++||+++++++.++ .|.. .+++..+++++||++|+|||++ .
T Consensus 17 vGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vptp~~~~~~~ 94 (425)
T PRK15182 17 VGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVPTPINTYKQP 94 (425)
T ss_pred chHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcCCCCCCCCCc
Confidence 89999999888 699999999999999998 4432 3445556789999999999998 3
Q ss_pred hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCC--CCCceEEEecc--CCChHhhhcCce
Q 022237 59 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS--WENPVMLDAPV--SGGVLAAEAGTL 134 (300)
Q Consensus 59 ~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~pv--~g~~~~~~~g~~ 134 (300)
+++.++....++.+. .++|++||++||+.|.+++++.+...+. ..|. ...+....+|. .++.......++
T Consensus 95 dl~~v~~a~~~i~~~--l~~g~lVI~~STv~pgtt~~~~~~~l~~----~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~ 168 (425)
T PRK15182 95 DLTPLIKASETVGTV--LNRGDIVVYESTVYPGCTEEECVPILAR----MSGMTFNQDFYVGYSPERINPGDKKHRLTNI 168 (425)
T ss_pred chHHHHHHHHHHHHh--cCCCCEEEEecCCCCcchHHHHHHHHHh----ccCCCcCCCeeEeeCCCcCCCCcccccccCC
Confidence 445565544445443 3567899999999999999765443321 1111 11233444454 444433333443
Q ss_pred E-EEeccCHHHHHHHHHHHHhcC-CCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 135 T-FMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 135 ~-~~~~g~~~~~~~~~~ll~~lg-~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
. ++.|++++..+.++++++.+. ..++++++++.|+.+|+++|++.+.++++++|+..+|++.|+|.+++.++++.+
T Consensus 169 ~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~-- 246 (425)
T PRK15182 169 KKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK-- 246 (425)
T ss_pred CeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC--
Confidence 3 455667888899999999996 357788889999999999999999999999999999999999999999996533
Q ss_pred CccccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022237 213 RCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 274 (300)
Q Consensus 213 ~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~ 274 (300)
|... .+.|| |...|..||...+...+++.|.+++++++++++-+
T Consensus 247 --~~~~----------------~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~ 291 (425)
T PRK15182 247 --WNFL----------------PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLND 291 (425)
T ss_pred --CCcc----------------cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 2111 12334 66678999999999999999999999999987633
No 22
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.94 E-value=7.8e-27 Score=210.28 Aligned_cols=266 Identities=15% Similarity=0.153 Sum_probs=208.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------C------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--------g------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||++||..|+++||+|++|+|++++.+.+... | +..+.++.++++.+|+||+|+|+. ++++++..
T Consensus 15 mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~-~~~~v~~~ 93 (328)
T PRK14618 15 WGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPSK-ALRETLAG 93 (328)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECchH-HHHHHHHh
Confidence 89999999999999999999999988888764 3 334568888889999999999998 77888743
Q ss_pred CCCcccCCCCCCCeEEEEcCC-CCHHH--HHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHH
Q 022237 67 PNGLLQGGNSVRPQLLIDSST-IDPQT--SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED 143 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~st-~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~ 143 (300)
. +++.++|++++ ..|.. .+.+.+.+.+. ... ++.++..|..........++++++++++++
T Consensus 94 l---------~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~---~~~----~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~ 157 (328)
T PRK14618 94 L---------PRALGYVSCAKGLAPDGGRLSELARVLEFL---TQA----RVAVLSGPNHAEEIARFLPAATVVASPEPG 157 (328)
T ss_pred c---------CcCCEEEEEeeccccCCCccchHHHHHHHh---cCC----CeEEEECccHHHHHHcCCCeEEEEEeCCHH
Confidence 1 23368888888 56654 55666665430 001 245677776655544445777888999999
Q ss_pred HHHHHHHHHHhcCCCeE--------eeCC---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022237 144 AYQAAKPLFLSMGKNTI--------YCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 206 (300)
Q Consensus 144 ~~~~~~~ll~~lg~~~~--------~~g~---------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~ 206 (300)
.+++++++|+..+.+++ +.+. .|.+..+|+.+|...+.+.+++.|+..++++.|+++++++++
T Consensus 158 ~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~ 237 (328)
T PRK14618 158 LARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGL 237 (328)
T ss_pred HHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcC
Confidence 99999999999998776 3443 488899999999999999999999999999999999999999
Q ss_pred HHhc----CCCccccccCCCCCCcccCCCCCC---C-CCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 207 LNSS----SARCWSSDSYNPVPGVMEGVPASR---N-YGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 207 ~~~~----~~~s~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
.+.+ ++.|+.++++.+...+ ..+ + +.++|.+.++.||++.+.+++++.++++|+++.+++++
T Consensus 238 ~~~gDl~~t~~s~~~rn~~~g~~~-----~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~----- 307 (328)
T PRK14618 238 SGLGDLIATATSPHSRNRAAGEAI-----VRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA----- 307 (328)
T ss_pred cchhheeeEeccCCCccHHHHHHH-----hCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----
Confidence 8763 5567666654322222 234 3 56688999999999999999999999999999999988
Q ss_pred cCCCCCchHHHHHHHhc
Q 022237 279 NGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 279 ~g~g~~d~~~~~~~~~~ 295 (300)
+++.+..++++.+.+
T Consensus 308 --~~~~~~~~~~~~~~~ 322 (328)
T PRK14618 308 --RGGWDPLAGLRSLMG 322 (328)
T ss_pred --hCCCCHHHHHHHHhc
Confidence 667787777776653
No 23
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.93 E-value=6.9e-24 Score=193.84 Aligned_cols=230 Identities=17% Similarity=0.164 Sum_probs=175.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh----------------CCCCC--CCCHHHHhhcCCEEEEecCCh-----
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----------------MGVPT--KETPFEVAEASDVVITMLPSS----- 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~----------------~g~~~--~~~~~e~~~~adiVii~vp~~----- 57 (300)
||.++|..|+. ||+|++||+++++++.+.+ .+.+. ..++.++++++|+||+|||++
T Consensus 11 vGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~ 89 (388)
T PRK15057 11 VGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKT 89 (388)
T ss_pred HHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEeCCCCCccCC
Confidence 89999988875 9999999999999998876 23333 234678889999999999988
Q ss_pred -----hhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcC
Q 022237 58 -----SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 132 (300)
Q Consensus 58 -----~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g 132 (300)
..+++++.++ .. .++|++||+.||++|.+++++.+.+.+ ......| .....|
T Consensus 90 ~~~dl~~v~~v~~~i---~~---~~~g~lVV~~STv~pgtt~~l~~~~~~------------~~v~~~P-----E~l~~G 146 (388)
T PRK15057 90 NYFNTSSVESVIKDV---VE---INPYAVMVIKSTVPVGFTAAMHKKYRT------------ENIIFSP-----EFLREG 146 (388)
T ss_pred CCcChHHHHHHHHHH---Hh---cCCCCEEEEeeecCCchHHHHHHHhhc------------CcEEECc-----ccccCC
Confidence 4566666433 22 245689999999999999999887653 1222234 344456
Q ss_pred ce--------EEEeccCHHHHHHHHHHHHh--cCCCeE-eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 022237 133 TL--------TFMVGGSEDAYQAAKPLFLS--MGKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 201 (300)
Q Consensus 133 ~~--------~~~~~g~~~~~~~~~~ll~~--lg~~~~-~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~ 201 (300)
+. .+++|++++..+++.+++.. ++..+. ++++++.|+.+|+++|.+.+.++++++|+..+|++.|+|.+
T Consensus 147 ~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~ 226 (388)
T PRK15057 147 KALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTR 226 (388)
T ss_pred cccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence 65 78899988888888888854 555444 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 022237 202 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 272 (300)
Q Consensus 202 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~ 272 (300)
++.++++....-+. ....| .+||...|..||...+...+ .++++++++++.++
T Consensus 227 eV~~a~~~d~ri~~--~~l~p--------------G~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~ 279 (388)
T PRK15057 227 QIIEGVCLDPRIGN--HYNNP--------------SFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDA 279 (388)
T ss_pred HHHHHhcCCCCCCC--ccCCC--------------CCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHH
Confidence 99999876541110 01112 23566778999999887655 56778999988875
No 24
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.92 E-value=6e-25 Score=197.91 Aligned_cols=270 Identities=16% Similarity=0.162 Sum_probs=198.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||+++|..|+++||+|++|+|++++++.+.+.+ .....++.++++++|+||+|||+. .+++++.+
T Consensus 12 mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~-~~~~v~~~ 90 (325)
T PRK00094 12 WGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ-ALREVLKQ 90 (325)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH-HHHHHHHH
Confidence 799999999999999999999999998887753 344567888889999999999986 88888865
Q ss_pred CCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHH
Q 022237 67 PNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 145 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~ 145 (300)
+...+ .++++||+++ |+.+.+.+++.+.+.+. .+......++.+|...........+..++.+++.+.+
T Consensus 91 l~~~~-----~~~~~vi~~~ngv~~~~~~~~~~~l~~~-----~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~ 160 (325)
T PRK00094 91 LKPLL-----PPDAPIVWATKGIEPGTGKLLSEVLEEE-----LPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELA 160 (325)
T ss_pred HHhhc-----CCCCEEEEEeecccCCCCCcHHHHHHHH-----cCCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHHH
Confidence 43332 3457888887 77777666666666542 1100123566667665444444455566777789999
Q ss_pred HHHHHHHHhcCCCeEeeCC-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 146 QAAKPLFLSMGKNTIYCGG-----------------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 146 ~~~~~ll~~lg~~~~~~g~-----------------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
++++++|+..+.++.+..+ .|.+..+|+++|.+......++.|++.++++.|+|+++++++..
T Consensus 161 ~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~ 240 (325)
T PRK00094 161 ERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAG 240 (325)
T ss_pred HHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccH
Confidence 9999999998876655433 26778889999999999999999999999999999999988765
Q ss_pred hc----CCCccccccCCCCCCcccCCCCCCC-C-----CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 209 SS----SARCWSSDSYNPVPGVMEGVPASRN-Y-----GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 209 ~~----~~~s~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
.+ ...++.++.+.+...+ ..+. + ..+ .+.++.||++.+.++++++|+++|+.++++++|
T Consensus 241 ~~~~~~~~~s~~~~~~~~g~~~-----~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~----- 309 (325)
T PRK00094 241 LGDLVLTCTSPLSRNRRFGLAL-----GQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL----- 309 (325)
T ss_pred hhhhhhhccCCCCccHHHHHHH-----HCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----
Confidence 44 2223322222211111 1111 1 112 567789999999999999999999999999998
Q ss_pred cCCCCCchHHHHHHHh
Q 022237 279 NGHDSKDFSCVFQHYY 294 (300)
Q Consensus 279 ~g~g~~d~~~~~~~~~ 294 (300)
+++.+...+++.+.
T Consensus 310 --~~~~~~~~~~~~~~ 323 (325)
T PRK00094 310 --YEGKDPREAVEDLM 323 (325)
T ss_pred --cCCCCHHHHHHHHh
Confidence 66777777776553
No 25
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.92 E-value=2e-24 Score=192.79 Aligned_cols=245 Identities=17% Similarity=0.202 Sum_probs=186.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++||+.|.++||+|++|||++. .++.++++++|+||+|+|++ ++++++.++... . ..+++
T Consensus 15 ~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~-~~~~v~~~l~~~--~--~~~~~ 76 (308)
T PRK14619 15 WGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMK-GVRPVAEQVQAL--N--LPPET 76 (308)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChH-HHHHHHHHHHHh--c--CCCCc
Confidence 799999999999999999999864 57788899999999999996 889888654321 1 23457
Q ss_pred EEEEcCC-CCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccC--CChHh-----hhcCceEEEeccCHHHHHHHHHHH
Q 022237 81 LLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVLA-----AEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 81 ivid~st-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~--g~~~~-----~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
+||++|+ ..|.+.+.+.+.+.. ++.++|+. .+|.. ....+.+++++++.+.+++++++|
T Consensus 77 ivi~~s~gi~~~~~~~~s~~~~~-------------~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll 143 (308)
T PRK14619 77 IIVTATKGLDPETTRTPSQIWQA-------------AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIF 143 (308)
T ss_pred EEEEeCCcccCCCCcCHHHHHHH-------------HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHh
Confidence 8999886 777766666666543 22333432 22221 223467888899999999999999
Q ss_pred HhcCCCeEeeCC-c--c--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc
Q 022237 153 LSMGKNTIYCGG-A--G--------------NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW 215 (300)
Q Consensus 153 ~~lg~~~~~~g~-~--g--------------~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~ 215 (300)
+..+.++++.++ . . .+..+|+..|...+..+.++.|++.++++.|+++++++++ .+.+.++
T Consensus 144 ~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~--~g~gd~~ 221 (308)
T PRK14619 144 SSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL--SGLGDLL 221 (308)
T ss_pred CCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc--cchhhhh
Confidence 999888875554 2 2 2344458899999999999999999999999999999885 2444433
Q ss_pred ccccCCCCCCcccCCCCCCCCCCCcchhhH----------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 022237 216 SSDSYNPVPGVMEGVPASRNYGGGFASKLM----------------AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
. .. + .+..|+|.++|.+... .||++.+.+++++.|+++|+.+.++++|
T Consensus 222 ~-t~----~-----~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~------ 285 (308)
T PRK14619 222 A-TC----T-----SPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL------ 285 (308)
T ss_pred e-ee----c-----CCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH------
Confidence 2 11 1 1346778777877776 9999999999999999999999999998
Q ss_pred CCCCCchHHHHHHHhc
Q 022237 280 GHDSKDFSCVFQHYYG 295 (300)
Q Consensus 280 g~g~~d~~~~~~~~~~ 295 (300)
+++.+...+++.+.+
T Consensus 286 -~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 286 -QGEITPQQALEELME 300 (308)
T ss_pred -cCCCCHHHHHHHHHc
Confidence 667777777777654
No 26
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.91 E-value=3.7e-23 Score=184.67 Aligned_cols=255 Identities=12% Similarity=0.127 Sum_probs=195.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCCC-------------CCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMGV-------------PTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~~adiVii~vp~ 56 (300)
||++||..|+++||+|++||++++.++.. .+.|. ..+.++.++++++|+|++|+|+
T Consensus 13 mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe 92 (308)
T PRK06129 13 IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVADADYVQESAPE 92 (308)
T ss_pred HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCCCCEEEECCcC
Confidence 79999999999999999999999877653 33442 4567888899999999999999
Q ss_pred hhhhhhhhcC-CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceE
Q 022237 57 SSHVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 135 (300)
Q Consensus 57 ~~~~~~v~~~-~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~ 135 (300)
+.+++..+.+ +.... ++ .+++. |++++....++++.+.. . +..+.++|+.+.... .+.
T Consensus 93 ~~~~k~~~~~~l~~~~-----~~-~~ii~-ssts~~~~~~la~~~~~------~----~~~~~~hp~~p~~~~----~lv 151 (308)
T PRK06129 93 NLELKRALFAELDALA-----PP-HAILA-SSTSALLASAFTEHLAG------R----ERCLVAHPINPPYLI----PVV 151 (308)
T ss_pred CHHHHHHHHHHHHHhC-----CC-cceEE-EeCCCCCHHHHHHhcCC------c----ccEEEEecCCCcccC----ceE
Confidence 8666555432 22222 22 45555 55555666777776643 1 257888888653211 245
Q ss_pred EEec---cCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 136 FMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 136 ~~~~---g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
.+++ ++++.+++++++++.+|++++++++.+.+. +++|++ ..+++|++.++++.|+|++++.++++.+.+
T Consensus 152 eiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl~----~a~~~EA~~l~~~g~~~~~~id~~~~~~~g 224 (308)
T PRK06129 152 EVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRLQ----GALLREAFRLVADGVASVDDIDAVIRDGLG 224 (308)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhccC
Confidence 5675 789999999999999999999998756665 455543 388899999999999999999999999988
Q ss_pred CccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 022237 213 RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292 (300)
Q Consensus 213 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~ 292 (300)
.+|.+ ..|+ +..+.|.++|......||..++.+++++.+.+.|++....+.+....+.-++..++..+.+.
T Consensus 225 ~~~~~--~gp~-------~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (308)
T PRK06129 225 LRWSF--MGPF-------ETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW 295 (308)
T ss_pred CCccC--cCHH-------HHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 87764 2332 22446777888999999999999999999999999998887777777778888888887764
No 27
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=3.3e-21 Score=170.64 Aligned_cols=242 Identities=16% Similarity=0.207 Sum_probs=189.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHhhcCCEEEEecCChh--
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSS-- 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~e~~~~adiVii~vp~~~-- 58 (300)
.|...+.+|++.||+|+++|.++++++.+++. | ...+++.+++++++|++|||||+|.
T Consensus 11 VGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~ 90 (414)
T COG1004 11 VGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDE 90 (414)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCC
Confidence 37888999999999999999999999887653 2 4567889999999999999999884
Q ss_pred -------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhc
Q 022237 59 -------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 131 (300)
Q Consensus 59 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~ 131 (300)
.++.+...+...+ .+.++||.-||+.|.+..++.+.+.+.. .+ ..+..+..|.|-.+..+..
T Consensus 91 dg~aDl~~V~ava~~i~~~~-----~~~~vvV~KSTVPvGt~~~v~~~i~~~~----~~--~~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 91 DGSADLSYVEAVAKDIGEIL-----DGKAVVVIKSTVPVGTTEEVRAKIREEN----SG--KDFEVASNPEFLREGSAVY 159 (414)
T ss_pred CCCccHHHHHHHHHHHHhhc-----CCCeEEEEcCCCCCCchHHHHHHHHhhc----cc--CCceEecChHHhcCcchhh
Confidence 2444554433333 2337999999999999999998876531 11 1467888898877666554
Q ss_pred Cce---EEEeccCH-HHHHHHHHHHHhc---CCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 022237 132 GTL---TFMVGGSE-DAYQAAKPLFLSM---GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 204 (300)
Q Consensus 132 g~~---~~~~~g~~-~~~~~~~~ll~~l---g~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~ 204 (300)
.++ .+++|.+. ++.+.+++++..+ ...+++++ ...|+++|+..|++.+..+..++|...+|++.|+|..++.
T Consensus 160 D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~-~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~ 238 (414)
T COG1004 160 DFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTD-LREAELIKYAANAFLATKISFINEIANICEKVGADVKQVA 238 (414)
T ss_pred hccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEec-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 433 46778744 4678888888776 44445554 5999999999999999999999999999999999999999
Q ss_pred HHHHhcC--CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 022237 205 KILNSSS--ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 272 (300)
Q Consensus 205 ~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~ 272 (300)
+.++... |..| .++ ..||...|+.||++.++..++++|.+.++++++.+.
T Consensus 239 ~gIGlD~RIG~~f----l~a--------------G~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~v 290 (414)
T COG1004 239 EGIGLDPRIGNHF----LNA--------------GFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEV 290 (414)
T ss_pred HHcCCCchhhHhh----CCC--------------CCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHH
Confidence 9987654 1111 111 246777899999999999999999999999998764
No 28
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.89 E-value=1.1e-21 Score=176.04 Aligned_cols=193 Identities=18% Similarity=0.207 Sum_probs=152.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh-----hHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~-----~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|++||.+|+++||+|++|||+++ +.+.+.+.|+..+.++.++++++|+||+|+|++..+++++.++ .+. .
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L---~~~--L 106 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNI---LPH--L 106 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHH---Hhh--C
Confidence 78999999999999999999987 4556777788888899999999999999999986588888643 332 3
Q ss_pred CCCeEEEEcCCCCHHHH-HHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHhhhcCceEEEecc--------CHHHHH
Q 022237 77 VRPQLLIDSSTIDPQTS-RNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVGG--------SEDAYQ 146 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~~~g~~~~~~~g--------~~~~~~ 146 (300)
+++++|||+||++|... +.+.+.+... ....++++.+ +++.+++ .+.+.+++++ +++.++
T Consensus 107 ~~g~IVId~ST~~~~~~s~~l~~~l~~~------~~~~gi~~~~p~~v~Gae----~g~l~Vm~gg~t~~~~~~~~e~~e 176 (342)
T PRK12557 107 PENAVICNTCTVSPVVLYYSLEGELRTK------RKDVGISSMHPAAVPGTP----QHGHYVIAGKTTNGTELATEEQIE 176 (342)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHhccc------ccccCeeecCCccccccc----cchheEEeCCCcccccCCCHHHHH
Confidence 45689999999999987 6776666421 0011244443 3334443 3444666654 888999
Q ss_pred HHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 147 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 147 ~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
+++++|+.+|.+++++++ |.+..+|+++|++.+.++++..|++.++++.|.++.++.+-+...
T Consensus 177 ~v~~LL~a~G~~v~~~~~-g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~ 239 (342)
T PRK12557 177 KCVELAESIGKEPYVVPA-DVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILM 239 (342)
T ss_pred HHHHHHHHcCCEEEEeCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999998887775 999999999999999999999999999999999998887755433
No 29
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.87 E-value=3.8e-22 Score=154.04 Aligned_cols=122 Identities=34% Similarity=0.576 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 245 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (300)
|.|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.||.++.+. +. .+..++|.++|+++..
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~--~~----~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRA--PR----MILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHH--HH----HHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhh--hh----hhhcccCCccchhHhh
Confidence 78999999999999999999999999999999999999999999999888866542 21 1457899999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 022237 246 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 246 ~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
.||++++.+++++.|+|+|+.+.+.++|+.+.++|+|++|+++++++|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999986
No 30
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=8.6e-21 Score=166.57 Aligned_cols=252 Identities=21% Similarity=0.288 Sum_probs=189.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-----CCCCCCHHHHh---hcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-----VPTKETPFEVA---EASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g-----~~~~~~~~e~~---~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||+.||.++.++||.|.+|||++++.+++.+.. +..+.+.+|.+ +...-|+++|.....+..++.++.++++
T Consensus 14 MG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le 93 (473)
T COG0362 14 MGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLE 93 (473)
T ss_pred hhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcC
Confidence 899999999999999999999999999998762 45566787765 5789999999776566777776555653
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
+|.|+||..++....+.+..+.+.+. |++|+..-|+|++..+..|. .+|.||++++++.++++|
T Consensus 94 -----~gDIiIDGGNs~y~DT~RR~~eL~~~----------Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil 157 (473)
T COG0362 94 -----KGDIIIDGGNSHYKDTIRRNKELSEK----------GILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPIL 157 (473)
T ss_pred -----CCCEEEeCCCcCCchHHHHHHHHHhc----------CCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHH
Confidence 45899999988766666655656542 38999999999999999998 899999999999999999
Q ss_pred HhcC------CCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HHhcCCCccccccCCC
Q 022237 153 LSMG------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---LNSSSARCWSSDSYNP 222 (300)
Q Consensus 153 ~~lg------~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~---~~~~~~~s~~~~~~~~ 222 (300)
..+. ..+.++|+-|+++.+||++|-+.++-|++++|++.+.+. +|++.+++.++ ++.+-..|++.+....
T Consensus 158 ~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~ 237 (473)
T COG0362 158 TKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITAD 237 (473)
T ss_pred HHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 9985 345799999999999999999999999999999999998 79998876655 4455556665443222
Q ss_pred CCCcccCCCCCCCCCCCcc-hhhHHHH------HHHHHHHHHHcCCCchHHHHH-HHHHHH
Q 022237 223 VPGVMEGVPASRNYGGGFA-SKLMAKD------LNLALASAKEVGVDCPLTSQA-QDIYAK 275 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~-~~~~~kd------~~~~~~~a~~~g~~~~~~~~~-~~~~~~ 275 (300)
.... .|-+.+-. ++..... =+.....|.++|+|++++... ...+.+
T Consensus 238 IL~~-------kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lS 291 (473)
T COG0362 238 ILRK-------KDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLS 291 (473)
T ss_pred HHhh-------cCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 1111 11111111 1111110 145566788899999887743 444433
No 31
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.85 E-value=2.6e-20 Score=162.76 Aligned_cols=274 Identities=15% Similarity=0.189 Sum_probs=197.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--------------g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
+|++||..|+++||+|.+|.|+++.++++... ++..++++.++++++|+|+++||.. .+++++.+
T Consensus 12 wGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs~-~~r~v~~~ 90 (329)
T COG0240 12 WGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPSQ-ALREVLRQ 90 (329)
T ss_pred HHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECChH-HHHHHHHH
Confidence 59999999999999999999999999988774 2456788999999999999999997 99999987
Q ss_pred CCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHH
Q 022237 67 PNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 145 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~ 145 (300)
++..+. ++++++.+| +..+.+.+.+.+.+.+. .+. . .+.++++|-+..+......+.+++.+-|++..
T Consensus 91 l~~~l~-----~~~~iv~~sKGie~~t~~l~seii~e~----l~~-~-~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a 159 (329)
T COG0240 91 LKPLLL-----KDAIIVSATKGLEPETGRLLSEIIEEE----LPD-N-PIAVLSGPSFAKEVAQGLPTAVVVASNDQEAA 159 (329)
T ss_pred Hhhhcc-----CCCeEEEEeccccCCCcchHHHHHHHH----cCC-C-eEEEEECccHHHHHhcCCCcEEEEecCCHHHH
Confidence 654442 335555555 67777777888877652 111 1 16778888887777766667666677788888
Q ss_pred HHHHHHHHhcCCCeEeeCC---c--------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 146 QAAKPLFLSMGKNTIYCGG---A--------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 146 ~~~~~ll~~lg~~~~~~g~---~--------------g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
++++.+|+.-..+++...+ . |....+.+..|+-.+....+++|+.+++...|-++++++.+-+
T Consensus 160 ~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsG 239 (329)
T COG0240 160 EKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSG 239 (329)
T ss_pred HHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccccc
Confidence 9999999864433332222 1 4445666889999999999999999999999999998877655
Q ss_pred hcC----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCC
Q 022237 209 SSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 284 (300)
Q Consensus 209 ~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~ 284 (300)
.+. +.|..+++++.+..+.++............+.+..+..+.+.++++++++++|+++++++++. +..
T Consensus 240 lGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~-------~~~ 312 (329)
T COG0240 240 LGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY-------EGL 312 (329)
T ss_pred ccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------CCC
Confidence 442 334444444332212121000000111233556788889999999999999999999999884 445
Q ss_pred chHHHHHHH
Q 022237 285 DFSCVFQHY 293 (300)
Q Consensus 285 d~~~~~~~~ 293 (300)
+...+++.+
T Consensus 313 ~~~~~~~~L 321 (329)
T COG0240 313 DPKEAIEEL 321 (329)
T ss_pred CHHHHHHHH
Confidence 555555554
No 32
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.85 E-value=4.3e-19 Score=165.55 Aligned_cols=245 Identities=15% Similarity=0.131 Sum_probs=183.4
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHHHHhCC-------------------CCCCCCHHHHhhcCCEEEEecCChh-
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEASDVVITMLPSSS- 58 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~~~~~g-------------------~~~~~~~~e~~~~adiVii~vp~~~- 58 (300)
||.++|..|+++| |+|+++|+++++++.+++.+ ...+++..++++++|++|+|||+|.
T Consensus 12 vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi~I~V~TP~~ 91 (473)
T PLN02353 12 VGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTK 91 (473)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEEEEEeCCCCC
Confidence 6899999999885 78999999999998876531 2344566778999999999998774
Q ss_pred -------------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCC
Q 022237 59 -------------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 125 (300)
Q Consensus 59 -------------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~ 125 (300)
.+++++..+... .+++++||..||+.|.+++++.+.+.+. ..| ..+++..+|.+-.
T Consensus 92 ~~g~~~~~~~Dls~v~~a~~~i~~~-----l~~~~lVv~~STvp~Gtt~~~~~~l~~~----~~g--~~f~v~~~PErl~ 160 (473)
T PLN02353 92 TRGLGAGKAADLTYWESAARMIADV-----SKSDKIVVEKSTVPVKTAEAIEKILTHN----SKG--INFQILSNPEFLA 160 (473)
T ss_pred CCCCcCCCCCcHHHHHHHHHHHHhh-----CCCCcEEEEeCCCCCChHHHHHHHHHhh----CCC--CCeEEEECCCccC
Confidence 234444333222 3456899999999999999998887652 112 2367788898766
Q ss_pred hHhhhcCc---eEEEeccC-----HHHHHHHHHHHHhcCC-CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022237 126 VLAAEAGT---LTFMVGGS-----EDAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 196 (300)
Q Consensus 126 ~~~~~~g~---~~~~~~g~-----~~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 196 (300)
+..+.... -.+++|+. +++.+.++++++.+.. .++.+.++..|+..|+..|.+.+.+++.++|...+|++.
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55544322 24666773 3467889999998853 455667789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC--chHHHHHHHH
Q 022237 197 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--CPLTSQAQDI 272 (300)
Q Consensus 197 Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~~~~~~~~~~ 272 (300)
|+|..++.++++...--++ ....| .+||...|..||...+...+++.|.+ +++.+++.++
T Consensus 241 giD~~eV~~~~~~d~rig~--~~l~P--------------G~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~i 302 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGP--KFLNA--------------SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKM 302 (473)
T ss_pred CCCHHHHHHHhCCCCcCCC--CCCCC--------------CCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 9999999998876531111 01112 23555678999999999999999998 7787776653
No 33
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=1.1e-18 Score=154.08 Aligned_cols=203 Identities=17% Similarity=0.202 Sum_probs=150.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHhhcCCEEEEecCChhh-
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSSH- 59 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~e~~~~adiVii~vp~~~~- 59 (300)
+|.++|..++++|++|+++|.|+.+++.+++- | .+.++++.++ +.||+++||||+|-.
T Consensus 20 VGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~iI~VPTPl~~ 98 (436)
T COG0677 20 VGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVFIICVPTPLKK 98 (436)
T ss_pred ccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEEEEEecCCcCC
Confidence 69999999999999999999999998877652 2 4455555554 599999999998831
Q ss_pred -----hhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCC--CCceEEEeccCCChHhhh--
Q 022237 60 -----VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW--ENPVMLDAPVSGGVLAAE-- 130 (300)
Q Consensus 60 -----~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pv~g~~~~~~-- 130 (300)
+.-|....+.+.+. +.+|++||--||++|.+++++...+.+. ..|.. ..+..-.+|.---|....
T Consensus 99 ~~~pDls~v~~aa~sIa~~--L~kG~LVIlEST~~PGTTe~v~~plle~----~sgL~~~~Df~laysPERv~PG~~~~e 172 (436)
T COG0677 99 YREPDLSYVESAARSIAPV--LKKGDLVILESTTPPGTTEEVVKPLLEE----RSGLKFGEDFYLAYSPERVLPGNVLKE 172 (436)
T ss_pred CCCCChHHHHHHHHHHHHh--cCCCCEEEEecCCCCCcHHHHHHHHHhh----cCCCcccceeeEeeCccccCCCchhhh
Confidence 11222222222222 3567899999999999999999988762 12221 234455566433222211
Q ss_pred -cCceEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 022237 131 -AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 209 (300)
Q Consensus 131 -~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 209 (300)
....-++-|-++...+.++.+++.+-..++.+.+...|++.|+..|.+...++++++|...+|+++|+|..++.++.+.
T Consensus 173 l~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIeaAnt 252 (436)
T COG0677 173 LVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIEAANT 252 (436)
T ss_pred hhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHhcc
Confidence 1222344444788999999999999777788888899999999999999999999999999999999999999998875
Q ss_pred c
Q 022237 210 S 210 (300)
Q Consensus 210 ~ 210 (300)
-
T Consensus 253 ~ 253 (436)
T COG0677 253 K 253 (436)
T ss_pred C
Confidence 4
No 34
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.81 E-value=1.5e-18 Score=164.18 Aligned_cols=252 Identities=15% Similarity=0.143 Sum_probs=170.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-------------------CC-CCCCCCHHHHhhcCCEEEEecCChhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDVVITMLPSSSHV 60 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~~~e~~~~adiVii~vp~~~~~ 60 (300)
||++||.+|+++||+|++||+++++.+.+.+ .| +..++++.+++++||+||.|+|++.++
T Consensus 15 MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~Vieavpe~~~v 94 (495)
T PRK07531 15 IGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDL 94 (495)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEEEEcCcCCHHH
Confidence 8999999999999999999999998766432 12 456778999999999999999999877
Q ss_pred hhhhcC-CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEec
Q 022237 61 LDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 139 (300)
Q Consensus 61 ~~v~~~-~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~ 139 (300)
+..+.+ +... .++ ..||++||+.+... .+.+.+.+ . +..++++|.... ..+.++.+++
T Consensus 95 k~~l~~~l~~~-----~~~-~~iI~SsTsgi~~s-~l~~~~~~------~----~r~~~~hP~nP~----~~~~Lvevv~ 153 (495)
T PRK07531 95 KRRVLAEIDAA-----ARP-DALIGSSTSGFLPS-DLQEGMTH------P----ERLFVAHPYNPV----YLLPLVELVG 153 (495)
T ss_pred HHHHHHHHHhh-----CCC-CcEEEEcCCCCCHH-HHHhhcCC------c----ceEEEEecCCCc----ccCceEEEcC
Confidence 775432 2222 233 35778888776644 55555432 1 246778875522 1235677888
Q ss_pred cC---HHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHhcCCCcc
Q 022237 140 GS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG-VSEALTLGQSLGISASTLTKILNSSSARCW 215 (300)
Q Consensus 140 g~---~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~-~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~ 215 (300)
|+ ++.+++++++++.+|+++++++ |.+.|++...++.. +.|++.++++.|++++++.++++.+.+.+|
T Consensus 154 g~~t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~ 225 (495)
T PRK07531 154 GGKTSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRW 225 (495)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc
Confidence 75 7899999999999999999987 46667777666777 499999999999999999999999987776
Q ss_pred ccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHH
Q 022237 216 SSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLAL-ASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291 (300)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~-~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~ 291 (300)
.. ..|+. .-+..++ -.+..+.+-+.-.+ +..++.+-..++.....+.+....+.-.+..++..+.+
T Consensus 226 ~~--~Gpf~--------~~dl~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (495)
T PRK07531 226 AQ--MGLFE--------TYRIAGGEAGMRHFLAQFGPCLKWPWTKLMDVPDLDDALVDKIAGQSDAQSGGLSIRELER 293 (495)
T ss_pred cc--cchHH--------HHHhcCcHHHHHHHHHHhchhhhhHHHhccCCCccCHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 52 12211 0111110 01112222222222 22355555556666666666666665566565554443
No 35
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.79 E-value=4.7e-18 Score=148.86 Aligned_cols=241 Identities=16% Similarity=0.186 Sum_probs=167.1
Q ss_pred ChHHHHHHHHhCCC----eEEEE-cCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY----KMAVH-DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||++|+++|.++|| +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|+|+ .++++++.++...+
T Consensus 11 mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~-~~~~~vl~~l~~~~---- 85 (266)
T PLN02688 11 MAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKP-QVVKDVLTELRPLL---- 85 (266)
T ss_pred HHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECc-HHHHHHHHHHHhhc----
Confidence 89999999999998 89999 9999999999888988888999999999999999975 48999986543222
Q ss_pred CCCCeEEEEc-CCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcCceEEEe---ccCHHHHHHHHH
Q 022237 76 SVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMV---GGSEDAYQAAKP 150 (300)
Q Consensus 76 ~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g~~~~~~---~g~~~~~~~~~~ 150 (300)
+++++||.+ +++.....+ +.... .+++ ..|..... ...+. +.++ +++++.++.+++
T Consensus 86 -~~~~~iIs~~~g~~~~~l~---~~~~~------------~~vvr~mP~~~~~--~~~~~-~~l~~~~~~~~~~~~~v~~ 146 (266)
T PLN02688 86 -SKDKLLVSVAAGITLADLQ---EWAGG------------RRVVRVMPNTPCL--VGEAA-SVMSLGPAATADDRDLVAT 146 (266)
T ss_pred -CCCCEEEEecCCCcHHHHH---HHcCC------------CCEEEECCCcHHH--HhCce-EEEEeCCCCCHHHHHHHHH
Confidence 344676744 555544333 33221 1344 34544332 22233 3333 237889999999
Q ss_pred HHHhcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccc-cCCCCCCcc
Q 022237 151 LFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD-SYNPVPGVM 227 (300)
Q Consensus 151 ll~~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~ 227 (300)
+|+.+|. ++++++ .......--....+.+.++..+.|+ +++.|+|++++.+++..+..+++.+- .....|.-+
T Consensus 147 l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l 222 (266)
T PLN02688 147 LFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQL 222 (266)
T ss_pred HHHhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999998 888865 4444444444566778888999998 88999999999999988765544321 111111111
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 022237 228 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 280 (300)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 280 (300)
.++--.|+ .-....++.+++.|++-.+.+++...++++.+.+
T Consensus 223 ----~~~v~spg-------G~t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 223 ----KDMVTSPG-------GTTIAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred ----HHhCCCCc-------hHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 01111222 1257778888889999999999999999998865
No 36
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=9.5e-18 Score=145.35 Aligned_cols=252 Identities=19% Similarity=0.261 Sum_probs=185.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---C--CCCCCCHHHHh---hcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---G--VPTKETPFEVA---EASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~---g--~~~~~~~~e~~---~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||..|+.+.+.+||.|.+|||+..+++++.+. | +..+.|++|.+ +...+|++.|.....+...++++.+++.
T Consensus 17 MGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~Le 96 (487)
T KOG2653|consen 17 MGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLE 96 (487)
T ss_pred hhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcC
Confidence 89999999999999999999999999998765 2 34567888875 5789999999887777777776655553
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
+|.+|||-.+.....+.+..+.+.. . |+-|+.+.++|++..+..|. .+|.||+++++..++++|
T Consensus 97 -----kgDiIIDGGNs~y~dT~RR~~el~k------~----GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~if 160 (487)
T KOG2653|consen 97 -----KGDIIIDGGNSEYQDTERRCRELAK------K----GILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIF 160 (487)
T ss_pred -----CCCEEEeCCcccCcchHHHHHHHHh------c----CcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHH
Confidence 4589999988765554444444432 2 37899999999999999998 889999999999999999
Q ss_pred HhcC-------CCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcCCCccccccCC
Q 022237 153 LSMG-------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYN 221 (300)
Q Consensus 153 ~~lg-------~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~ 221 (300)
+.+. ..+.++|+-|+++.+||++|-+.++-|++++|++.+.++ .|++.+++.+++. .+-.-||+.+...
T Consensus 161 q~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~ 240 (487)
T KOG2653|consen 161 QKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITA 240 (487)
T ss_pred HHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhH
Confidence 8874 245789999999999999999999999999999999999 7899888766654 4444455544322
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHHH-------HHHHHHHHHHcCCCchHHHHH-HHHHHHH
Q 022237 222 PVPGVMEGVPASRNYGGGFASKLMAKD-------LNLALASAKEVGVDCPLTSQA-QDIYAKL 276 (300)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~kd-------~~~~~~~a~~~g~~~~~~~~~-~~~~~~a 276 (300)
....+.+ + .|-.+-.-.-| =+.....+-++|+|.|++..+ ...+.++
T Consensus 241 dIlk~~d------~--~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~ 295 (487)
T KOG2653|consen 241 DILKFKD------E--DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSA 295 (487)
T ss_pred HHhheec------c--CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 2221111 0 01111111111 144556677899999987754 3444333
No 37
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.75 E-value=2e-17 Score=149.97 Aligned_cols=251 Identities=18% Similarity=0.174 Sum_probs=167.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-----------------CCCCHHHHhhcCCEEEEecCChhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----------------TKETPFEVAEASDVVITMLPSSSHVLDV 63 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----------------~~~~~~e~~~~adiVii~vp~~~~~~~v 63 (300)
||+.+|..|+++||+|++|||++. .+.+.+.|.. ...++ +.++.+|+||+|||.+ .+.++
T Consensus 13 mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~vk~~-~~~~~ 89 (341)
T PRK08229 13 IGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTVKSA-ATADA 89 (341)
T ss_pred HHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEecCc-chHHH
Confidence 799999999999999999999764 4566655532 12344 5678999999999987 66777
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe--c---cCCChHh---hhcCceE
Q 022237 64 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA--P---VSGGVLA---AEAGTLT 135 (300)
Q Consensus 64 ~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p---v~g~~~~---~~~g~~~ 135 (300)
+..+.+.+ .++++|+++++ .....+.+.+.+.+ .+++.+ | +..+|.. ...|++.
T Consensus 90 ~~~l~~~~-----~~~~iii~~~n-G~~~~~~l~~~~~~------------~~~~~g~~~~~~~~~~pg~~~~~~~g~l~ 151 (341)
T PRK08229 90 AAALAGHA-----RPGAVVVSFQN-GVRNADVLRAALPG------------ATVLAGMVPFNVISRGPGAFHQGTSGALA 151 (341)
T ss_pred HHHHHhhC-----CCCCEEEEeCC-CCCcHHHHHHhCCC------------CcEEEEEEEEEEEecCCceEEecCCCceE
Confidence 75443332 34577887654 33334455555432 123333 1 2222222 2234433
Q ss_pred EEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
Q 022237 136 FMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS--------------------MLGVSEALTLGQS 195 (300)
Q Consensus 136 ~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~--------------------~~~~~Ea~~l~~~ 195 (300)
+ + +.+.++++.++|+..+.++.+.++++.....|++.|.+.... ..++.|++.++++
T Consensus 152 ~--~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a 228 (341)
T PRK08229 152 I--E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKA 228 (341)
T ss_pred e--c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 3 2 235568999999999999999999999999999999744333 3789999999999
Q ss_pred cCCCHHHHHHHHHhcC-----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHH------------HHHHHHHH
Q 022237 196 LGISASTLTKILNSSS-----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLN------------LALASAKE 258 (300)
Q Consensus 196 ~Gi~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~~ 258 (300)
.|++++.+.++...+. ..++..... ...+.+.++.. ...+.+|+. .+++++++
T Consensus 229 ~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~ 298 (341)
T PRK08229 229 AGIRPARLTPLPPAWIPRLLRLPDPLFRRL-------AGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGR 298 (341)
T ss_pred cCCCccccCCCChhhhhhhhcCChHHHHHH-------HHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHH
Confidence 9999776543332221 011110100 00011222221 245899998 69999999
Q ss_pred cCCCchHHHHHHHHHHHHHHcCCCCCc
Q 022237 259 VGVDCPLTSQAQDIYAKLCENGHDSKD 285 (300)
Q Consensus 259 ~g~~~~~~~~~~~~~~~a~~~g~g~~d 285 (300)
+|+++|..+.++++++.+.+.|.....
T Consensus 299 ~gv~~P~~~~~~~~~~~~~~~~~~~~~ 325 (341)
T PRK08229 299 LGAPAPVNARLCALVHEAERAGARPAW 325 (341)
T ss_pred cCCCCcHHHHHHHHHHHHHhCCCcCCC
Confidence 999999999999999999998876654
No 38
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.74 E-value=4.6e-17 Score=143.45 Aligned_cols=242 Identities=13% Similarity=0.140 Sum_probs=160.7
Q ss_pred ChHHHHHHHHhCC----CeEEEEcCChh-hHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKAG----YKMAVHDVNCN-VMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G----~~V~~~dr~~~-~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||++|+++|.++| ++|++|||+++ +++.+... |+..+.++.++++++|+||+|||++ .+.+++.++...+
T Consensus 14 mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~vl~~l~~~~--- 89 (279)
T PRK07679 14 IAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAEALIPFKEYI--- 89 (279)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHHHHHHHHhhc---
Confidence 8999999999998 78999999864 66777654 7777788889999999999999877 7777775443222
Q ss_pred CCCCCeEEEEc-CCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccC---HHHHHHHHH
Q 022237 75 NSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS---EDAYQAAKP 150 (300)
Q Consensus 75 ~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~---~~~~~~~~~ 150 (300)
.++++||++ +++++++.+++. .. -..+..++.. .+.+..+.++++++++ ++.++.+++
T Consensus 90 --~~~~liIs~~aGi~~~~l~~~~---~~------------~~~v~r~mPn-~~~~~~~~~t~~~~~~~~~~~~~~~v~~ 151 (279)
T PRK07679 90 --HNNQLIISLLAGVSTHSIRNLL---QK------------DVPIIRAMPN-TSAAILKSATAISPSKHATAEHIQTAKA 151 (279)
T ss_pred --CCCCEEEEECCCCCHHHHHHHc---CC------------CCeEEEECCC-HHHHHhcccEEEeeCCCCCHHHHHHHHH
Confidence 345799996 888888666532 11 0112222222 2334445557777764 678899999
Q ss_pred HHHhcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-cccccCCCCCCcc
Q 022237 151 LFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARC-WSSDSYNPVPGVM 227 (300)
Q Consensus 151 ll~~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~ 227 (300)
+|+.+|..+ ++.+ +......--+.+.+.+.++..+.|+ +++.|+|.+++.+++.....++ .++......|..
T Consensus 152 l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~---~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~- 226 (279)
T PRK07679 152 LFETIGLVS-VVEEEDMHAVTALSGSGPAYIYYVVEAMEKA---AKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSI- 226 (279)
T ss_pred HHHhCCcEE-EeCHHHhhhHHHhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Confidence 999999754 4432 2212222223344555555666665 8999999999999998854222 222211111222
Q ss_pred cCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 022237 228 EGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 280 (300)
Q Consensus 228 ~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 280 (300)
..+++ .|+++ ....+...++.|+.--+.+++..-++++.+.|
T Consensus 227 ----l~~~v~spgg~-------t~~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 227 ----LRKEITSPGGT-------TEAGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred ----HHHhcCCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 23455 66665 45566667778888888888888888887765
No 39
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.73 E-value=1.1e-16 Score=151.42 Aligned_cols=180 Identities=18% Similarity=0.200 Sum_probs=137.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||.+||..|+++||+|++||++++.+++. .+.| +..+.++++ +++||+||.|||+
T Consensus 18 MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~aDlViEav~E 96 (507)
T PRK08268 18 MGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LADCDLVVEAIVE 96 (507)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCCCCEEEEcCcc
Confidence 89999999999999999999999988773 4445 355667765 5699999999999
Q ss_pred hhhhhhhhcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHhhhcCce
Q 022237 57 SSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~~~g~~ 134 (300)
+.+++..+.+. +... .+++.++ +|+||.++. ++++.+.. ..++.|.||++ +|+. .+
T Consensus 97 ~~~vK~~vf~~---l~~~-~~~~ailasntStl~i~---~la~~~~~------p~r~~G~hff~Pa~v~---------~L 154 (507)
T PRK08268 97 RLDVKQALFAQ---LEAI-VSPDCILATNTSSLSIT---AIAAALKH------PERVAGLHFFNPVPLM---------KL 154 (507)
T ss_pred cHHHHHHHHHH---HHhh-CCCCcEEEECCCCCCHH---HHHhhcCC------cccEEEEeecCCcccC---------ee
Confidence 99999886532 2211 2345666 599999997 45554432 23344589998 5665 35
Q ss_pred EEEecc---CHHHHHHHHHHHHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 135 TFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 135 ~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
..+++| +++.++++.++++.+|+.++++++ +| .+.|-+. ...++|++.++++.|++++++.++++.+
T Consensus 155 vEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll---~~~~~Ea~~l~~~g~~~~~~iD~al~~~ 225 (507)
T PRK08268 155 VEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAA---RPYYTEALRVLEEGVADPATIDAILREA 225 (507)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 777775 889999999999999999999986 56 2444443 2588999999999999999999999765
Q ss_pred CC
Q 022237 211 SA 212 (300)
Q Consensus 211 ~~ 212 (300)
.|
T Consensus 226 ~G 227 (507)
T PRK08268 226 AG 227 (507)
T ss_pred CC
Confidence 54
No 40
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=1.6e-16 Score=140.72 Aligned_cols=181 Identities=17% Similarity=0.182 Sum_probs=131.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC------------------------CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------------------------GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~------------------------g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||.+||..|+++||+|++||+++++++.+.+. ++..+.++.+++++||+||+|+|+
T Consensus 12 mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe 91 (288)
T PRK09260 12 MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVPE 91 (288)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEEEeccC
Confidence 89999999999999999999999988775431 123456788899999999999999
Q ss_pred hhhhhhhhc-CCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLDVYN-GPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v~~-~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+.+++..+. ++... .++++++ +++||.+|....+. +.. ..+..+.||+ +|+.++ .+
T Consensus 92 ~~~~k~~~~~~l~~~-----~~~~~il~~~tSt~~~~~l~~~---~~~------~~r~~g~h~~-~Pv~~~-------~L 149 (288)
T PRK09260 92 KLELKKAVFETADAH-----APAECYIATNTSTMSPTEIASF---TKR------PERVIAMHFF-NPVHKM-------KL 149 (288)
T ss_pred CHHHHHHHHHHHHhh-----CCCCcEEEEcCCCCCHHHHHhh---cCC------cccEEEEecC-CCcccC-------ce
Confidence 977765543 22222 2344555 79999999764433 321 1122346788 677654 46
Q ss_pred EEEecc---CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 135 TFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 135 ~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
..+++| +++.+++++++++.+|++++++++ ..+.....+. ...++|++.+.++.-.+++++..++..+.
T Consensus 150 ve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d-~~Gf~~nRl~-------~~~~~ea~~~~~~gv~~~~~iD~~~~~g~ 221 (288)
T PRK09260 150 VELIRGLETSDETVQVAKEVAEQMGKETVVVNE-FPGFVTSRIS-------ALVGNEAFYMLQEGVATAEDIDKAIRLGL 221 (288)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC-cccHHHHHHH-------HHHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 888887 899999999999999999999986 3333333222 25568999999885578999988876554
No 41
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.70 E-value=2e-15 Score=132.83 Aligned_cols=181 Identities=16% Similarity=0.238 Sum_probs=133.2
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCC-CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~-~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||++|+++|.++|+ +|++|||++++.+.+.+.|.. .+.++.++. ++|+||+|||.+ .+.+++.++.. + +
T Consensus 11 mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~~~l~~-l-----~ 82 (275)
T PRK08507 11 MGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEILPKLLD-I-----K 82 (275)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHHHHHhc-c-----C
Confidence 89999999999996 799999999999988887764 445677765 599999999987 66667765433 3 2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCC----hHhhh----cCceEEEec---cCHHHH
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGG----VLAAE----AGTLTFMVG---GSEDAY 145 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~----~~~~~----~g~~~~~~~---g~~~~~ 145 (300)
++++|+|++++++...+.+.+... ..|+.. |+.|+ |..+. .|...++++ ++++.+
T Consensus 83 ~~~iv~d~gs~k~~i~~~~~~~~~-------------~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~ 149 (275)
T PRK08507 83 ENTTIIDLGSTKAKIIESVPKHIR-------------KNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQ 149 (275)
T ss_pred CCCEEEECccchHHHHHHHHHhcC-------------CCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHH
Confidence 457999999988777666544311 245654 88764 43332 566677775 367788
Q ss_pred HHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022237 146 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 207 (300)
Q Consensus 146 ~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~ 207 (300)
+.++++|+.+|.+++++++.+....+++++++.. ....++.+++ . .+.+.+.+.+..
T Consensus 150 ~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~--~--~~~~~~~~~~~~ 206 (275)
T PRK08507 150 ERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTV--L--KEEDERNIFDLA 206 (275)
T ss_pred HHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH--H--hcCChHHHHhhc
Confidence 9999999999999999999999999999999976 3344444443 1 255666655544
No 42
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.69 E-value=5.4e-16 Score=146.27 Aligned_cols=179 Identities=18% Similarity=0.227 Sum_probs=133.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||.+||..|+++||+|++||++++.+++. .+.| +..++++++ +++||+||.|+|+
T Consensus 16 MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~aDlVIEav~E 94 (503)
T TIGR02279 16 MGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LADAGLVIEAIVE 94 (503)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCCCCEEEEcCcC
Confidence 89999999999999999999999988653 3334 234667755 5799999999999
Q ss_pred hhhhhhhhcC-CCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHhhhcCc
Q 022237 57 SSHVLDVYNG-PNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGT 133 (300)
Q Consensus 57 ~~~~~~v~~~-~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~~~g~ 133 (300)
+.+++..+.+ +... .+++.++. ++||.++. ++++.+.+ ..+..|.||++ +|+..
T Consensus 95 ~~~vK~~vf~~l~~~-----~~~~~IlasnTStl~i~---~iA~~~~~------p~r~~G~HFf~Papv~~--------- 151 (503)
T TIGR02279 95 NLEVKKALFAQLEEL-----CPADTIIASNTSSLSIT---AIAAGLAR------PERVAGLHFFNPAPVMA--------- 151 (503)
T ss_pred cHHHHHHHHHHHHhh-----CCCCeEEEECCCCCCHH---HHHHhcCc------ccceEEEeccCccccCc---------
Confidence 9998887653 2222 23434433 56666654 44554432 23345689998 56652
Q ss_pred eEEEecc---CHHHHHHHHHHHHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 022237 134 LTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 209 (300)
Q Consensus 134 ~~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 209 (300)
+..+++| +++.++.+.++++.+|+.++++++ +|. ++|+++. ..+.|++.++++.+++++++.+++..
T Consensus 152 LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~~----~~~~EA~~l~e~g~a~~~~ID~al~~ 222 (503)
T TIGR02279 152 LVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVAR----PYYAEALRALEEQVAAPAVLDAALRD 222 (503)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5778888 899999999999999999999986 563 3444443 68999999999999999999999986
Q ss_pred cCC
Q 022237 210 SSA 212 (300)
Q Consensus 210 ~~~ 212 (300)
+.+
T Consensus 223 ~~G 225 (503)
T TIGR02279 223 GAG 225 (503)
T ss_pred cCC
Confidence 543
No 43
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.69 E-value=3.3e-15 Score=129.82 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=107.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhH-----HHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVM-----KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~-----~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|.+||++|+++||+|++|||+++++ +.+.+.|+..++++.++++++|+||+|+|++.++++|+. ++++. .
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~---GLaa~--L 106 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIAR---TIIEH--V 106 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHH---HHHhc--C
Confidence 7899999999999999999997765 358888999999999999999999999999988999973 34544 4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHhh---hcCceEEEec-cCHHHHHHHHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAA---EAGTLTFMVG-GSEDAYQAAKPL 151 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~---~~g~~~~~~~-g~~~~~~~~~~l 151 (300)
++|++|||+||++|....++-+..-+.+ +.. .++.... +.+.+.+... ..|....-.+ .+++..+++.++
T Consensus 107 ~~GaIVID~STIsP~t~~~~~e~~l~~~---r~d--~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el 181 (341)
T TIGR01724 107 PENAVICNTCTVSPVVLYYSLEKILRLK---RTD--VGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVEL 181 (341)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHhhcC---ccc--cCeeccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHH
Confidence 5679999999999999888776622210 110 1111111 1233333220 0011000001 267888999999
Q ss_pred HHhcCCCeEeeCC
Q 022237 152 FLSMGKNTIYCGG 164 (300)
Q Consensus 152 l~~lg~~~~~~g~ 164 (300)
.+..++.++.+..
T Consensus 182 ~~~~~~~~~~~pa 194 (341)
T TIGR01724 182 AKSTGKKAYVVPA 194 (341)
T ss_pred HHHhCCCeeecch
Confidence 9999998887743
No 44
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.69 E-value=9.7e-16 Score=140.05 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=134.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|.++||+|++||+++. .++++++++||+||+|+|.. ...+++.++.. + ++++
T Consensus 110 mG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~~~l~~-l-----~~~~ 169 (374)
T PRK11199 110 LGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVIARLPP-L-----PEDC 169 (374)
T ss_pred hhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHHHHHhC-C-----CCCc
Confidence 899999999999999999998631 35678889999999999998 55667755433 2 4568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcCceEEEecc-CHHHHHHHHHHHHhcCCC
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKN 158 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~lg~~ 158 (300)
+|+|+|++++.....+.+... ..|+ .+|++|+......+...+++++ +++.++.+.++++.+|.+
T Consensus 170 iv~Dv~SvK~~~~~~~~~~~~-------------~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~ 236 (374)
T PRK11199 170 ILVDLTSVKNAPLQAMLAAHS-------------GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGAR 236 (374)
T ss_pred EEEECCCccHHHHHHHHHhCC-------------CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCE
Confidence 999999999988877765432 2466 7899997666666776777776 567889999999999999
Q ss_pred eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022237 159 TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 205 (300)
Q Consensus 159 ~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~ 205 (300)
++++++.++...+++++.+ .++.+++++..+++ .+.+.+.+.+
T Consensus 237 v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 237 LHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred EEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 9999999999999999844 67788888888876 7888776544
No 45
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=4.4e-16 Score=138.87 Aligned_cols=187 Identities=15% Similarity=0.172 Sum_probs=134.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh-------HH-----------HHHhCC-------------CCCCCC--HHHHhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV-------MK-----------MFSDMG-------------VPTKET--PFEVAEAS 47 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~-------~~-----------~~~~~g-------------~~~~~~--~~e~~~~a 47 (300)
||..||..++.+|++|.+||++++. ++ .+.+.| +..+.+ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 9999999999999999999999852 11 112222 222322 66888999
Q ss_pred CEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChH
Q 022237 48 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 127 (300)
Q Consensus 48 diVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~ 127 (300)
|+||.|||.+.+++..+.+. +.+. .++++++ +||+++....++++.+.+ +.+..+.||+++|..-...
T Consensus 81 D~ViEav~E~~~~K~~~f~~--l~~~--~~~~~il--aSntS~~~~~~la~~~~~------p~r~~g~Hf~~Pp~~~~lv 148 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRW--LGRH--VDADAII--ASTTSTFLVTDLQRHVAH------PERFLNAHWLNPAYLMPLV 148 (314)
T ss_pred CEEEECCcCCHHHHHHHHHH--HHhh--CCCCcEE--EEccccCCHHHHHhhcCC------cccEEEEecCCccccCceE
Confidence 99999999999998877642 2221 3444555 688888888888877643 3344558899988332211
Q ss_pred hhhcCceEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022237 128 AAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 207 (300)
Q Consensus 128 ~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~ 207 (300)
....+. +++++.++++.++++.+|+.++++++.+ +. .+.......++|++.++++.|++++++.+++
T Consensus 149 EVv~g~-----~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gf-------i~nri~~~~l~EAl~l~e~g~~~~e~iD~a~ 215 (314)
T PRK08269 149 EVSPSD-----ATDPAVVDRLAALLERIGKVPVVCGPSP-GY-------IVPRIQALAMNEAARMVEEGVASAEDIDKAI 215 (314)
T ss_pred EEeCCC-----CCCHHHHHHHHHHHHHcCCcEEEecCCC-Cc-------chHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 111111 5588999999999999999999998743 32 3344456888999999999999999999998
Q ss_pred HhcCC
Q 022237 208 NSSSA 212 (300)
Q Consensus 208 ~~~~~ 212 (300)
..+.+
T Consensus 216 ~~g~G 220 (314)
T PRK08269 216 RTGFG 220 (314)
T ss_pred HhCCC
Confidence 87754
No 46
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=1.5e-15 Score=136.02 Aligned_cols=185 Identities=19% Similarity=0.232 Sum_probs=126.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----C--------------CCCCCCHHHHhhcCCEEEEecCChhh-h
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----G--------------VPTKETPFEVAEASDVVITMLPSSSH-V 60 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----g--------------~~~~~~~~e~~~~adiVii~vp~~~~-~ 60 (300)
||++||..|+++||+|++||+++++++.+.+. + +..++++.+++++||+||+|||.+.+ .
T Consensus 15 mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~ 94 (311)
T PRK06130 15 MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELK 94 (311)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEEEeccCcHHHH
Confidence 89999999999999999999999888766541 2 23456778888999999999998754 3
Q ss_pred hhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc
Q 022237 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 140 (300)
Q Consensus 61 ~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g 140 (300)
..++.++...+ +++++ |.+++.... ..++++.+.. ...+.+.|+.++|..+ .+..++.+
T Consensus 95 ~~v~~~l~~~~-----~~~~i-i~s~tsg~~-~~~l~~~~~~------~~~~ig~h~~~p~~~~--------~l~~i~~g 153 (311)
T PRK06130 95 RDVFARLDGLC-----DPDTI-FATNTSGLP-ITAIAQAVTR------PERFVGTHFFTPADVI--------PLVEVVRG 153 (311)
T ss_pred HHHHHHHHHhC-----CCCcE-EEECCCCCC-HHHHHhhcCC------cccEEEEccCCCCccC--------ceEEEeCC
Confidence 44554433332 23334 433443333 3355555432 1111224444444222 13444444
Q ss_pred ---CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 022237 141 ---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSAR 213 (300)
Q Consensus 141 ---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~ 213 (300)
+++.++.++++++.+|+.++++++...+. +++|++. ..++|++.++++.|++++++.++++.+.+.
T Consensus 154 ~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~ 222 (311)
T PRK06130 154 DKTSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQH----ALAREAISLLEKGVASAEDIDEVVKWSLGI 222 (311)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence 68899999999999999999997522222 6677755 779999999999999999999999876553
No 47
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.66 E-value=9.3e-16 Score=135.13 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=123.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||++||..|.++|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+|.+ .+.+++.++...+ +++
T Consensus 11 mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~~~l~~~l-----~~~ 84 (279)
T PRK07417 11 IGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPSEQLIPAL-----PPE 84 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHHHHHHHhC-----CCC
Confidence 89999999999999999999999999988887753 2333345788999999999987 5566665433322 345
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCCh-Hhhh-------cCceEEEec---cCHHHHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV-LAAE-------AGTLTFMVG---GSEDAYQA 147 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~-~~~~-------~g~~~~~~~---g~~~~~~~ 147 (300)
.+|+|++++++...+.+.+.. ..|+. +|++|++ .... .+...+++. ++++.++.
T Consensus 85 ~ii~d~~Svk~~~~~~~~~~~--------------~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~ 150 (279)
T PRK07417 85 AIVTDVGSVKAPIVEAWEKLH--------------PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAI 150 (279)
T ss_pred cEEEeCcchHHHHHHHHHHhh--------------CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHH
Confidence 899999999988766554432 13565 6888765 2222 233344443 47788999
Q ss_pred HHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHH
Q 022237 148 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG 185 (300)
Q Consensus 148 ~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~ 185 (300)
++++++.+|.+++++++.+....+++++|+.......+
T Consensus 151 v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 151 VEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred HHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 99999999999999999999999999998887655443
No 48
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.66 E-value=7.4e-16 Score=138.39 Aligned_cols=261 Identities=13% Similarity=0.071 Sum_probs=172.3
Q ss_pred ChHHHHHHHHhCC--------CeEEEEcC-----ChhhHHHHHhC--------C------CCCCCCHHHHhhcCCEEEEe
Q 022237 1 MGFRMASNLMKAG--------YKMAVHDV-----NCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITM 53 (300)
Q Consensus 1 mG~~la~~l~~~G--------~~V~~~dr-----~~~~~~~~~~~--------g------~~~~~~~~e~~~~adiVii~ 53 (300)
||++||..|+.+| |+|.+|.| +++-.+.+++. | +..+++++++++++|+||++
T Consensus 10 wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal~~ADiIIlA 89 (342)
T TIGR03376 10 WGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAAKGADILVFV 89 (342)
T ss_pred HHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHHhcCCEEEEE
Confidence 6999999999999 99999998 55555555442 1 23456888999999999999
Q ss_pred cCChhhhhhhhcCCCCcccCCCCCCCeEEEEc-CCCCHH--HHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh
Q 022237 54 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQ--TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 130 (300)
Q Consensus 54 vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~-st~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~ 130 (300)
||+. .+++++.++.+.+. +++++|.+ .+..+. +.+.+.+.+.+. .+ ..+.++.+|.+..+....
T Consensus 90 VPs~-~i~~vl~~l~~~l~-----~~~~iVs~tKGie~~~~~~~~~se~i~e~-----l~--~~~~~lsGP~~A~Eva~~ 156 (342)
T TIGR03376 90 IPHQ-FLEGICKQLKGHVK-----PNARAISCIKGLEVSKDGVKLLSDIIEEE-----LG--IPCGVLSGANLANEVAKE 156 (342)
T ss_pred CChH-HHHHHHHHHHhhcC-----CCCEEEEEeCCcccCCCcCccHHHHHHHH-----hC--CCeEEeeCcchHHHHHcC
Confidence 9997 89999887665552 23455544 456665 656666666552 11 135668888877766666
Q ss_pred cCceEEEeccC----HHHHHHHHHHHHhcCCCeEeeCC-c----------------cHHHHHHHHHHHHHHHHHHHHHHH
Q 022237 131 AGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIYCGG-A----------------GNGAAAKICNNLTMAVSMLGVSEA 189 (300)
Q Consensus 131 ~g~~~~~~~g~----~~~~~~~~~ll~~lg~~~~~~g~-~----------------g~a~~~k~~~n~~~~~~~~~~~Ea 189 (300)
..+.+++++.+ .+..+.++++|+.--.+++...+ . |....+.+..|+..+.+..++.|+
T Consensus 157 ~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em 236 (342)
T TIGR03376 157 KFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEM 236 (342)
T ss_pred CCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 66656666777 78888999998753333322222 2 333444467899999999999999
Q ss_pred HHHHHHcCCCHH--HHHHHHHhcC--CCccccccCCCCCCccc-CCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCC
Q 022237 190 LTLGQSLGISAS--TLTKILNSSS--ARCWSSDSYNPVPGVME-GVPASRNYGG--GFASKLMAKDLNLALASAKEVGVD 262 (300)
Q Consensus 190 ~~l~~~~Gi~~~--~~~~~~~~~~--~~s~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~ 262 (300)
..+++.+|-+++ +++.+-..+. ..+..++++..+..+.+ +...+.-... ...+.+....++.+.+++++.+++
T Consensus 237 ~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~ 316 (342)
T TIGR03376 237 IKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKD 316 (342)
T ss_pred HHHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCC
Confidence 999999999877 7776655442 11222333332221211 1000000000 112334566678899999999999
Q ss_pred --chHHHHHHHHHH
Q 022237 263 --CPLTSQAQDIYA 274 (300)
Q Consensus 263 --~~~~~~~~~~~~ 274 (300)
+|+++++++++.
T Consensus 317 ~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 317 DEFPLFEAVYQILY 330 (342)
T ss_pred cCCCHHHHHHHHHh
Confidence 999999999873
No 49
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.65 E-value=1.7e-15 Score=137.01 Aligned_cols=274 Identities=15% Similarity=0.134 Sum_probs=174.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC---------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g---------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
||+++|..|+++| +|.+|.|+++..+.+++.+ +...+++.++++++|+||+|||.. .+++++.
T Consensus 18 ~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavps~-~~~~vl~ 95 (341)
T PRK12439 18 WGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVPSH-GFRGVLT 95 (341)
T ss_pred HHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeCHH-HHHHHHH
Confidence 7999999999999 6889999999998887642 123456778889999999999976 8888988
Q ss_pred CCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHH
Q 022237 66 GPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 144 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~ 144 (300)
++.+.+. +++++|.+ .+....+.+.+.+.+.+. ..+ .....+..|-+.........+..++.+.+++.
T Consensus 96 ~i~~~l~-----~~~~vIsl~kGi~~~t~~~~se~i~~~----l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~ 164 (341)
T PRK12439 96 ELAKELR-----PWVPVVSLVKGLEQGTNMRMSQIIEEV----LPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHL 164 (341)
T ss_pred HHHhhcC-----CCCEEEEEEeCCcCCCCCcHHHHHHHH----cCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHH
Confidence 7655542 22344433 355544344444444331 000 01334555644332222222223444557777
Q ss_pred HHHHHHHHHhcCCCeEeeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022237 145 YQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 207 (300)
Q Consensus 145 ~~~~~~ll~~lg~~~~~~g~~-----------------g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~ 207 (300)
.+.++++|+.-+.++....++ |....+.+..|...+....++.|+..++++.|.++++++.+.
T Consensus 165 ~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~ 244 (341)
T PRK12439 165 ATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLA 244 (341)
T ss_pred HHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 889999998777655544443 222344456677777788999999999999999999998876
Q ss_pred HhcC----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q 022237 208 NSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 283 (300)
Q Consensus 208 ~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~ 283 (300)
..+. +.|..++++..+..+.++...+.-....-.+-+....++.+.++++++++++|+++++++++ +++
T Consensus 245 G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il-------~~~ 317 (341)
T PRK12439 245 GMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVI-------NHG 317 (341)
T ss_pred hhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCC
Confidence 5552 22222333322211111110000000001234577778999999999999999999999998 567
Q ss_pred CchHHHHHHHh
Q 022237 284 KDFSCVFQHYY 294 (300)
Q Consensus 284 ~d~~~~~~~~~ 294 (300)
.+...+++.+.
T Consensus 318 ~~~~~~~~~l~ 328 (341)
T PRK12439 318 STVEQAYRGLI 328 (341)
T ss_pred CCHHHHHHHHh
Confidence 77777777653
No 50
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.64 E-value=3.7e-15 Score=134.75 Aligned_cols=273 Identities=11% Similarity=0.053 Sum_probs=182.4
Q ss_pred ChHHHHHHHHhCC-------CeEEEEcCChh-----hHHHHHhC--------------CCCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDM--------------GVPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G-------~~V~~~dr~~~-----~~~~~~~~--------------g~~~~~~~~e~~~~adiVii~v 54 (300)
||++||..|+++| |+|.+|.|+++ .++.+++. ++..++++.++++++|+||++|
T Consensus 22 wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 22 WGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAVEDADLLIFVI 101 (365)
T ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHHhcCCEEEEEc
Confidence 6999999999998 89999999986 36666543 2344678889999999999999
Q ss_pred CChhhhhhhhcCCCC--cccCCCCCCCeEEEEcC-CCCHHHH--HHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhh
Q 022237 55 PSSSHVLDVYNGPNG--LLQGGNSVRPQLLIDSS-TIDPQTS--RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 129 (300)
Q Consensus 55 p~~~~~~~v~~~~~~--~l~~~~~~~~~ivid~s-t~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~ 129 (300)
|.. .+++++.++.+ .+. +++++|.++ +..+.+- ..+.+.+.+. .+ ..+.++.+|.+..+...
T Consensus 102 Psq-~l~~vl~~l~~~~~l~-----~~~~iIS~aKGIe~~t~~~~~~sevi~e~-----l~--~~~~~LsGPs~A~Eva~ 168 (365)
T PTZ00345 102 PHQ-FLESVLSQIKENNNLK-----KHARAISLTKGIIVENGKPVLCSDVIEEE-----LG--IPCCALSGANVANDVAR 168 (365)
T ss_pred ChH-HHHHHHHHhccccccC-----CCCEEEEEeCCcccCCCCcccHHHHHHHH-----hC--CCeEEEECCCHHHHHHc
Confidence 887 89999988765 332 234555433 4444432 3455555442 11 13566788877776666
Q ss_pred hcCceEEEeccCHHHHHHHHHHHHhcCCCeEeeCC-c----------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022237 130 EAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-A----------------GNGAAAKICNNLTMAVSMLGVSEALTL 192 (300)
Q Consensus 130 ~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~-~----------------g~a~~~k~~~n~~~~~~~~~~~Ea~~l 192 (300)
...+..++++.|.+..+.++++|+.-..+++...+ . |....+++..|+..+.+..++.|+..+
T Consensus 169 ~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l 248 (365)
T PTZ00345 169 EEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLF 248 (365)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 66666677777888889999999854444333222 1 333445577899999999999999999
Q ss_pred HHHcC--CCHHHHHHHHHhcC--CCccccccCCCCCCcccCCCCCCCCCC---C---cchhhHHHHHHHHHHHHHHcCC-
Q 022237 193 GQSLG--ISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGVPASRNYGG---G---FASKLMAKDLNLALASAKEVGV- 261 (300)
Q Consensus 193 ~~~~G--i~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~kd~~~~~~~a~~~g~- 261 (300)
++++| .++++++.+...+. ..+..++++..+..+.++.. ...+.. . ..+.+....++.+.++++++++
T Consensus 249 ~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~-~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~ 327 (365)
T PTZ00345 249 GKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNG-KKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLK 327 (365)
T ss_pred HHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCC-CCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCC
Confidence 99996 48999988766553 12222343332222211100 001110 0 1234567778999999999999
Q ss_pred -CchHHHHHHHHHHHHHHcCCCCCchHHHHHHHh
Q 022237 262 -DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 294 (300)
Q Consensus 262 -~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 294 (300)
++|+++++++++ +++.+...+++.+.
T Consensus 328 ~~~Pi~~~vy~il-------~~~~~~~~~~~~l~ 354 (365)
T PTZ00345 328 KEFPLFTVTYKIA-------FEGADPSSLIDVLS 354 (365)
T ss_pred CCCCHHHHHHHHH-------hCCCCHHHHHHHHH
Confidence 899999999998 45556666666553
No 51
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.64 E-value=1.6e-14 Score=128.51 Aligned_cols=255 Identities=12% Similarity=0.063 Sum_probs=158.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C---------CCCCCCCHHHHhhcCCEEEEecCChhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M---------GVPTKETPFEVAEASDVVITMLPSSSHV 60 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~---------g~~~~~~~~e~~~~adiVii~vp~~~~~ 60 (300)
||..||..|+.+||+|++||++++..+.+.+ . .+..++++++++++||+|+.|+|.+.++
T Consensus 18 MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~v 97 (321)
T PRK07066 18 IGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQESAPEREAL 97 (321)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEEECCcCCHHH
Confidence 8999999999999999999999987654322 1 1245668889999999999999999888
Q ss_pred hhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc
Q 022237 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 140 (300)
Q Consensus 61 ~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g 140 (300)
+..+.+ .+.+. .+++ .|+.+||+ +....++++.+.+ +.++.+.||+.+|-.-.......+. ..
T Consensus 98 K~~lf~--~l~~~--~~~~-aIlaSnTS-~l~~s~la~~~~~------p~R~~g~HffnP~~~~pLVEVv~g~-----~T 160 (321)
T PRK07066 98 KLELHE--RISRA--AKPD-AIIASSTS-GLLPTDFYARATH------PERCVVGHPFNPVYLLPLVEVLGGE-----RT 160 (321)
T ss_pred HHHHHH--HHHHh--CCCC-eEEEECCC-ccCHHHHHHhcCC------cccEEEEecCCccccCceEEEeCCC-----CC
Confidence 877653 12221 2444 46665555 4455566665543 3444456676655433321111111 23
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccC
Q 022237 141 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSY 220 (300)
Q Consensus 141 ~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~ 220 (300)
+++.++.+.++++.+|+.++.+..--.+.....+.- ..+.|++.+.++...+++++..++..+.+..|. ..
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~-------a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~--~~ 231 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLE-------ALWREALHLVNEGVATTGEIDDAIRFGAGIRWS--FM 231 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHH-------HHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCcc--Cc
Confidence 789999999999999999988853233444433333 566999999999889999999998888765553 12
Q ss_pred CCCCCcccCCCCCCCCCCCcc--hhhHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHH
Q 022237 221 NPVPGVMEGVPASRNYGGGFA--SKLMAKDLNLAL-ASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291 (300)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~--~~~~~kd~~~~~-~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~ 291 (300)
+|+. .-|..+ .. +..+.+.+.-.. +..++.+. .++.....+.+....+.-+|.+.+..+++
T Consensus 232 Gpf~--------~~Dl~G-ld~g~~~~~~~~g~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (321)
T PRK07066 232 GTFL--------TYTLAG-GDAGMRHFMQQFGPALELPWTKLVA-PELTDALIDRVVEGTAEQQGPRSIKALER 295 (321)
T ss_pred CHHH--------HhhhcC-hHHHHHHHHHHhhhhhhHHHHhcCC-CcccHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3321 011111 11 112222222222 22344554 34666666666666666666666666554
No 52
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.63 E-value=2.2e-14 Score=133.52 Aligned_cols=185 Identities=18% Similarity=0.238 Sum_probs=136.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH-hCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+++|+.|.++|++|++|+|++++..++. +.|+....++.+++.++|+||+|+|.+ .+.+++.++.+.+ +++
T Consensus 12 mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl~~l~~~l-----~~~ 85 (437)
T PRK08655 12 LGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVIKEVAPHV-----KEG 85 (437)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHHHHHHhhC-----CCC
Confidence 799999999999999999999998865544 347766678888999999999999987 6677776543332 456
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChHhhhcCceEEEecc---CHHHHHHHHHHHHhc
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSM 155 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~l 155 (300)
++|+|++++++...+.+.+.++. +..|+.+ |++|.......|...+++.+ +++.++.++++|+.+
T Consensus 86 ~iViDvsSvK~~~~~~l~~~~~~-----------~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~ 154 (437)
T PRK08655 86 SLLMDVTSVKERPVEAMEEYAPE-----------GVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKE 154 (437)
T ss_pred CEEEEcccccHHHHHHHHHhcCC-----------CCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 89999999999888888776532 2577765 99886555556776777754 577889999999999
Q ss_pred CCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022237 156 GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 206 (300)
Q Consensus 156 g~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~ 206 (300)
|.+++++++......+ .+.....++.+.+.+..+ ++.|++.++....
T Consensus 155 G~~v~~~~~e~HD~~~---a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~ 201 (437)
T PRK08655 155 GARVIVTSPEEHDRIM---SVVQGLTHFAYISIASTL-KRLGVDIKESRKF 201 (437)
T ss_pred CCEEEECCHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhh
Confidence 9999888765444444 333333344444555444 6679988776544
No 53
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=1.1e-14 Score=127.45 Aligned_cols=244 Identities=14% Similarity=0.120 Sum_probs=166.9
Q ss_pred ChHHHHHHHHhCCC----eEEEEcCChhhHHHHHh-CCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||++|+++|.++|+ +|++|||++++++.+.+ .|+..+.++.+++++||+||+|||+ ..+++|+.++.+.+
T Consensus 13 MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl~~l~~~~---- 87 (272)
T PRK12491 13 MGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVINQIKDQI---- 87 (272)
T ss_pred HHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHHHHHHHhh----
Confidence 89999999999885 69999999999988875 6877777888999999999999986 58999986544333
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFL 153 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~ 153 (300)
.++++||+ -....+...+.+.+... .+ +-.-+...+.....|...+..+. +++..+.++.+|+
T Consensus 88 -~~~~lvIS--i~AGi~i~~l~~~l~~~-----------~~-vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~ 152 (272)
T PRK12491 88 -KNDVIVVT--IAAGKSIKSTENEFDRK-----------LK-VIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFN 152 (272)
T ss_pred -cCCcEEEE--eCCCCcHHHHHHhcCCC-----------Cc-EEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 23467774 33333444555554310 11 22234444555556654444333 4667789999999
Q ss_pred hcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-CccccccCCCCCCcccCC
Q 022237 154 SMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA-RCWSSDSYNPVPGVMEGV 230 (300)
Q Consensus 154 ~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~ 230 (300)
.+|.. +.+.+ +....++--+.+++++.++..+.++ +.+.|++.++..+++.+... ..-++.....-|.-
T Consensus 153 ~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~---- 224 (272)
T PRK12491 153 IFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGE---- 224 (272)
T ss_pred cCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----
Confidence 99975 56654 7888888889999999999999998 88899999999998887642 11111110000111
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 022237 231 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 231 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
+.++--.|+.+ ....+...++.|+.--+.+++..-++++.+-
T Consensus 225 l~~~V~sPGGt-------T~~gl~~le~~~~~~~~~~av~aa~~r~~el 266 (272)
T PRK12491 225 LKDMVCSPGGT-------TIEAVATLEEKGLRTAIISAMKRCTQKSMEM 266 (272)
T ss_pred HHHhCCCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHH
Confidence 11222234332 3556667778888888888888888777664
No 54
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.59 E-value=2.8e-14 Score=126.79 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=127.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHH-----------HHhCC------------CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG------------VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~-----------~~~~g------------~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||.+||..|+++|++|++||+++++++. +.+.| .....+..+++++||+||+|||++
T Consensus 15 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vieav~e~ 94 (295)
T PLN02545 15 MGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDADFIIEAIVES 94 (295)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCCCEEEEcCccC
Confidence 8999999999999999999999988753 33332 122333446789999999999988
Q ss_pred hhhhhhhcC-CCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceE
Q 022237 58 SHVLDVYNG-PNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 135 (300)
Q Consensus 58 ~~~~~v~~~-~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~ 135 (300)
.+++..+.+ +... .+++++|+ ++|++++....+. +.. ...+.++||+++|..+. ++
T Consensus 95 ~~~k~~v~~~l~~~-----~~~~~il~s~tS~i~~~~l~~~---~~~------~~r~~g~h~~~pp~~~~--------lv 152 (295)
T PLN02545 95 EDLKKKLFSELDRI-----CKPSAILASNTSSISITRLASA---TQR------PQQVIGMHFMNPPPIMK--------LV 152 (295)
T ss_pred HHHHHHHHHHHHhh-----CCCCcEEEECCCCCCHHHHHhh---cCC------CcceEEEeccCCcccCc--------eE
Confidence 787766543 2222 23445665 8888877754433 321 12223478888887643 24
Q ss_pred EEec---cCHHHHHHHHHHHHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 136 FMVG---GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 136 ~~~~---g~~~~~~~~~~ll~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
.++. ++++.++.++++++.+|+.++++++ .| .+++.++. ..++|++.+.++...+++++..++..+.
T Consensus 153 eiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~----~~~~ea~~~~~~gv~~~~~iD~~~~~g~ 223 (295)
T PLN02545 153 EIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----FIVNRILM----PMINEAFYALYTGVASKEDIDTGMKLGT 223 (295)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 4443 4789999999999999999998876 44 24445554 5689999999997788999987776554
No 55
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.58 E-value=4.5e-14 Score=125.29 Aligned_cols=180 Identities=18% Similarity=0.211 Sum_probs=124.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||.+||..|+++|++|++||++++.++.+.+ .| +..+++++ .+++||+||+|+|+
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aD~Vieavpe 93 (292)
T PRK07530 15 MGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLADCDLVIEAATE 93 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcCCCEEEEcCcC
Confidence 8999999999999999999999998776432 23 23445654 57899999999999
Q ss_pred hhhhhhh-hcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChHhhhcCc
Q 022237 57 SSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGT 133 (300)
Q Consensus 57 ~~~~~~v-~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~~~~~g~ 133 (300)
+.+++.. +.++... .+++++++ ++||..+. .+++.+.. ..++.+.||+++ |+....
T Consensus 94 ~~~~k~~~~~~l~~~-----~~~~~ii~s~ts~~~~s---~la~~~~~------~~r~~g~h~~~p~~~~~~v------- 152 (292)
T PRK07530 94 DETVKRKIFAQLCPV-----LKPEAILATNTSSISIT---RLASATDR------PERFIGIHFMNPVPVMKLV------- 152 (292)
T ss_pred CHHHHHHHHHHHHhh-----CCCCcEEEEcCCCCCHH---HHHhhcCC------cccEEEeeccCCcccCceE-------
Confidence 8665544 4332222 23446666 77777654 45554431 122334677773 333221
Q ss_pred eEEE--eccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 134 LTFM--VGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 134 ~~~~--~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
-++ .+++++.++.+.++++.+|+.++++++.+ -+++++++. ..++|++.+.++.-.+++++..++..+.
T Consensus 153 -ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~----~~~~ea~~~~~~g~~~~~~iD~~~~~g~ 223 (292)
T PRK07530 153 -ELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILL----PMINEAIYTLYEGVGSVEAIDTAMKLGA 223 (292)
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 122 25689999999999999999999987644 455566665 6679999999884458899888876553
No 56
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.57 E-value=1.2e-13 Score=124.45 Aligned_cols=269 Identities=14% Similarity=0.134 Sum_probs=152.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--C------------CCCCCHHHHh-hcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--V------------PTKETPFEVA-EASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g--~------------~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~ 65 (300)
||++++..|+++||+|.+|+|+++.++.+.+.+ . ....++.+++ ..+|+||++||+. .+++++.
T Consensus 11 ~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks~-~~~~~l~ 89 (326)
T PRK14620 11 FGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPTQ-QLRTICQ 89 (326)
T ss_pred HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCHH-HHHHHHH
Confidence 799999999999999999999999888887631 1 1234556666 5899999999887 8888887
Q ss_pred CCCC-cccCCCCCCCeEEEEcCCCCHHHH----HHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc
Q 022237 66 GPNG-LLQGGNSVRPQLLIDSSTIDPQTS----RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 140 (300)
Q Consensus 66 ~~~~-~l~~~~~~~~~ivid~st~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g 140 (300)
++.+ .+. +...+|+.+.+....+. +.+.+.+.. +.+..+.+|-+.........+...+.+.
T Consensus 90 ~l~~~~l~----~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~----------~~~~~~~Gp~~a~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 90 QLQDCHLK----KNTPILICSKGIEKSSLKFPSEIVNEILPN----------NPIAILSGPSFAKEIAEKLPCSIVLAGQ 155 (326)
T ss_pred HHHHhcCC----CCCEEEEEEcCeeCCCCccHHHHHHHHcCC----------CceEeecCCcHHHHHHcCCCcEEEEecC
Confidence 7654 432 22245666666544222 222222221 1133344443222111111222334444
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHcCC--CHH
Q 022237 141 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICN-----------------NLTMAVSMLGVSEALTLGQSLGI--SAS 201 (300)
Q Consensus 141 ~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~-----------------n~~~~~~~~~~~Ea~~l~~~~Gi--~~~ 201 (300)
+.+..+.+.++|+.-+.++....++-.....|.+- |........++.|+..++++.|. +++
T Consensus 156 ~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~ 235 (326)
T PRK14620 156 NETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLN 235 (326)
T ss_pred CHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 55555666666665554444434443333444443 34444567889999999999987 788
Q ss_pred HHH------HHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022237 202 TLT------KILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 275 (300)
Q Consensus 202 ~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~ 275 (300)
+++ +.+.... +..++++..+..+.++.+...-....-+.-.....+..+.++++++|+++|+.+.+++++
T Consensus 236 ~~~gl~g~gdl~~t~~--~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~-- 311 (326)
T PRK14620 236 TLIGPSCLGDLILTCT--TLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLL-- 311 (326)
T ss_pred hhhccchhhhhhheec--CCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH--
Confidence 885 4442111 111122111100101101000000001112355556799999999999999999999987
Q ss_pred HHHcCCCCCchHHHHHHH
Q 022237 276 LCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 276 a~~~g~g~~d~~~~~~~~ 293 (300)
+++.+...+++.+
T Consensus 312 -----~~~~~~~~~~~~~ 324 (326)
T PRK14620 312 -----YENISLEKTISVI 324 (326)
T ss_pred -----hCCCCHHHHHHHH
Confidence 4455555555443
No 57
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.56 E-value=2.9e-13 Score=118.56 Aligned_cols=242 Identities=16% Similarity=0.193 Sum_probs=154.6
Q ss_pred ChHHHHHHHHhCC---CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAG---YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G---~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||++++..|.++| ++|.+|+|++++.+.+.+. |.....++.++++++|+||+|+|.+ .+++++..+...+
T Consensus 13 mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~l~~~~----- 86 (267)
T PRK11880 13 MASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSELKGQL----- 86 (267)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHHHHhhc-----
Confidence 7999999999999 7899999999999888775 7777778888899999999999877 7888886543222
Q ss_pred CCCeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHH
Q 022237 77 VRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFL 153 (300)
Q Consensus 77 ~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~ 153 (300)
+++||.++ +++.. .+.+.+.. +.+++.. +...|.....+...+..+. +++.++.++.+|+
T Consensus 87 --~~~vvs~~~gi~~~---~l~~~~~~-----------~~~iv~~-~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~ 149 (267)
T PRK11880 87 --DKLVVSIAAGVTLA---RLERLLGA-----------DLPVVRA-MPNTPALVGAGMTALTANALVSAEDRELVENLLS 149 (267)
T ss_pred --CCEEEEecCCCCHH---HHHHhcCC-----------CCcEEEe-cCCchHHHcCceEEEecCCCCCHHHHHHHHHHHH
Confidence 24555444 44432 33344321 1233331 2233433334443334443 7889999999999
Q ss_pred hcCCCeEeeC-C--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-CccccccCCCCCCcccC
Q 022237 154 SMGKNTIYCG-G--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA-RCWSSDSYNPVPGVMEG 229 (300)
Q Consensus 154 ~lg~~~~~~g-~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~ 229 (300)
.+|. ++++. + ...+.++-.+.+.+.+.++..+.++ +.+.|+++++..+++..... ..-........+.-+
T Consensus 150 ~lG~-~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l-- 223 (267)
T PRK11880 150 AFGK-VVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADA---GVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAEL-- 223 (267)
T ss_pred hCCe-EEEECChHhcchHHHHhcChHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--
Confidence 9997 55555 3 4444445444455555555555554 77789999999888876531 111100000000000
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 022237 230 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 280 (300)
Q Consensus 230 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 280 (300)
...--.|+ .-....++.+++.|++-.+.+++...++++.+.+
T Consensus 224 --~~~v~tpg-------G~t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 224 --RDNVTSPG-------GTTIAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred --HHhCCCCc-------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 00111121 2247777888999999999999999999998864
No 58
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.55 E-value=2.7e-13 Score=116.75 Aligned_cols=243 Identities=16% Similarity=0.175 Sum_probs=168.2
Q ss_pred ChHHHHHHHHhCC----CeEEEEcCChhhHHHHH-hCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAG----YKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G----~~V~~~dr~~~~~~~~~-~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||.+|+.+|.++| .+|++.||++++.+.+. +.|...+.+..+++..+|+||+||.. ..+++|+.++.+ .
T Consensus 12 Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP-q~~~~vl~~l~~-~---- 85 (266)
T COG0345 12 MGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP-QDLEEVLSKLKP-L---- 85 (266)
T ss_pred HHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh-HhHHHHHHHhhc-c----
Confidence 8999999999999 58999999999997554 44666577888999999999999955 599999987655 2
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFL 153 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~ 153 (300)
.++++|| |-....+...+.+++.. .+++- -+...+.....|...+..+. +++..+.+.++|+
T Consensus 86 -~~~~lvI--SiaAGv~~~~l~~~l~~------------~~vvR-~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~ 149 (266)
T COG0345 86 -TKDKLVI--SIAAGVSIETLERLLGG------------LRVVR-VMPNTPALVGAGVTAISANANVSEEDKAFVEALLS 149 (266)
T ss_pred -cCCCEEE--EEeCCCCHHHHHHHcCC------------CceEE-eCCChHHHHcCcceeeecCccCCHHHHHHHHHHHH
Confidence 2346777 44555555566666532 12222 24444556666764444433 6778889999999
Q ss_pred hcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCC
Q 022237 154 SMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 230 (300)
Q Consensus 154 ~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~ 230 (300)
.+|. ++.+.+ .....++--+.++|++.++..+.++ +.+.|++.++..+++.+.. |..-++.....-|..+
T Consensus 150 ~~G~-v~~v~E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~L--- 222 (266)
T COG0345 150 AVGK-VVEVEESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPAEL--- 222 (266)
T ss_pred hcCC-eEEechHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---
Confidence 9996 455555 7777888888899998888888888 8999999999999888764 2221212111112222
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 022237 231 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 280 (300)
Q Consensus 231 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 280 (300)
..+-.+|+.+.....+ ..++.|+..-+.+++...++++.+-|
T Consensus 223 -r~~VtSPGGtTiagl~-------~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 223 -RDQVTSPGGTTIAGLR-------VLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred -HHhCcCCCchHHHHHH-------HHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 2233355555443333 34477888888888888888877654
No 59
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.54 E-value=3.1e-13 Score=123.16 Aligned_cols=185 Identities=12% Similarity=0.140 Sum_probs=129.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC----CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~----~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||++||+.|.++|++|.+|+++++..+.....+.. ...++.+++++||+||+|||.+ .+.+++.++... . .
T Consensus 11 iG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~~l~~~--~--l 85 (359)
T PRK06545 11 IGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLAELADL--E--L 85 (359)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhc--C--C
Confidence 89999999999999999999888776554444332 2356778889999999999997 778888665331 1 2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChH--------hhhcCceEEEec---cCHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL--------AAEAGTLTFMVG---GSEDA 144 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~--------~~~~g~~~~~~~---g~~~~ 144 (300)
+++.+|+|+++++....+.+.+.... +.+|+. +|++|++. ....+..++++. .+++.
T Consensus 86 ~~~~ivtDv~SvK~~i~~~~~~~~~~-----------~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~ 154 (359)
T PRK06545 86 KPGVIVTDVGSVKGAILAEAEALLGD-----------LIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDA 154 (359)
T ss_pred CCCcEEEeCccccHHHHHHHHHhcCC-----------CCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHH
Confidence 34589999999999888777665321 256777 68888632 122455466665 46889
Q ss_pred HHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 145 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 145 ~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
++.++++++.+|..++++++......+.+++..-.... ++ |+...+.+.+...++..
T Consensus 155 ~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~a--l~~~~~~~~~~~~~la~ 211 (359)
T PRK06545 155 VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----SS--LAARLAGEHPLALRLAA 211 (359)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----HH--HHHhhccCchHHHhhhc
Confidence 99999999999999988987666666666655444222 22 24555666655555543
No 60
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.53 E-value=9.9e-14 Score=123.05 Aligned_cols=184 Identities=16% Similarity=0.204 Sum_probs=124.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh--------------CCC-------------CCCCCHHHHhhcCCEEEEe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--------------MGV-------------PTKETPFEVAEASDVVITM 53 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~--------------~g~-------------~~~~~~~e~~~~adiVii~ 53 (300)
||++||..|+++|++|++||++++.++...+ .|. ...++. ++++++|+||+|
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViea 92 (291)
T PRK06035 14 MGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESLSDADFIVEA 92 (291)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHhCCCCEEEEc
Confidence 8999999999999999999999988764321 121 133344 677999999999
Q ss_pred cCChhhhhh-hhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChHhhhc
Q 022237 54 LPSSSHVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEA 131 (300)
Q Consensus 54 vp~~~~~~~-v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~~~~~ 131 (300)
+|.+..++. ++.++...+ +++++++ |+++.....++++.+.. ..++.+.||+++ |+.+.. ....
T Consensus 93 v~e~~~~k~~~~~~l~~~~-----~~~~il~--S~tsg~~~~~la~~~~~------~~r~ig~hf~~P~~~~~~v-Ev~~ 158 (291)
T PRK06035 93 VPEKLDLKRKVFAELERNV-----SPETIIA--SNTSGIMIAEIATALER------KDRFIGMHWFNPAPVMKLI-EVVR 158 (291)
T ss_pred CcCcHHHHHHHHHHHHhhC-----CCCeEEE--EcCCCCCHHHHHhhcCC------cccEEEEecCCCcccCccE-EEeC
Confidence 999865444 444333332 3445655 44554555667666542 223345777773 444332 2223
Q ss_pred CceEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 132 GTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 132 g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
|.. .+++.++.+.++++.+|+.++++++.+.....|++.|++ +|++.+.++.-.+++++..++..+.
T Consensus 159 g~~-----T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~--------~ea~~~~~~g~a~~~~iD~~~~~~~ 225 (291)
T PRK06035 159 AAL-----TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWL--------LEAIRSFEIGIATIKDIDEMCKLAF 225 (291)
T ss_pred CCC-----CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHH--------HHHHHHHHcCCCCHHHHHHHHhhcC
Confidence 332 278999999999999999999998866666667665543 6888888774478999988876554
Q ss_pred C
Q 022237 212 A 212 (300)
Q Consensus 212 ~ 212 (300)
+
T Consensus 226 g 226 (291)
T PRK06035 226 G 226 (291)
T ss_pred C
Confidence 3
No 61
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.51 E-value=2.6e-13 Score=120.10 Aligned_cols=183 Identities=14% Similarity=0.173 Sum_probs=122.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------------CCCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------------GVPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-------------------------g~~~~~~~~e~~~~adiVii~vp 55 (300)
||+++|..|+++||+|++||++++.++++.+. ++..+++++++++++|+||+|+|
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavp 93 (287)
T PRK08293 14 LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVP 93 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEecc
Confidence 89999999999999999999999876655321 22346788888999999999999
Q ss_pred Chhhh-hhhhcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCc
Q 022237 56 SSSHV-LDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 133 (300)
Q Consensus 56 ~~~~~-~~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~ 133 (300)
++.++ ++++.++...+ +++++| .++||..+.. +.+.+.. ..++.+.||..+|.. ..
T Consensus 94 e~~~~k~~~~~~l~~~~-----~~~~ii~sntSt~~~~~---~~~~~~~------~~r~vg~Hf~~p~~~--------~~ 151 (287)
T PRK08293 94 EDPEIKGDFYEELAKVA-----PEKTIFATNSSTLLPSQ---FAEATGR------PEKFLALHFANEIWK--------NN 151 (287)
T ss_pred CCHHHHHHHHHHHHhhC-----CCCCEEEECcccCCHHH---HHhhcCC------cccEEEEcCCCCCCc--------CC
Confidence 87554 34454333332 344566 4666665543 3333321 122223444433221 12
Q ss_pred eEEEe---ccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 134 LTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 134 ~~~~~---~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
+..++ .++++.++.+.++++.+|+.++.+..-..+..+..+.. ..++|++.+.++...+++++..++..+
T Consensus 152 lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~-------~~~~ea~~l~~~g~a~~~~iD~a~~~~ 224 (287)
T PRK08293 152 TAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLV-------PFLSAALALWAKGVADPETIDKTWMIA 224 (287)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHH-------HHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 23333 34789999999999999999888864355555554443 445999999998778999998888766
Q ss_pred CC
Q 022237 211 SA 212 (300)
Q Consensus 211 ~~ 212 (300)
.+
T Consensus 225 ~g 226 (287)
T PRK08293 225 TG 226 (287)
T ss_pred cC
Confidence 54
No 62
>PRK07680 late competence protein ComER; Validated
Probab=99.50 E-value=1.3e-12 Score=114.84 Aligned_cols=186 Identities=14% Similarity=0.158 Sum_probs=130.5
Q ss_pred ChHHHHHHHHhCCC----eEEEEcCChhhHHHHHhC--CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G~----~V~~~dr~~~~~~~~~~~--g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||++++++|.++|+ +|.+|||++++.+.+.+. |+....++.+++.++|+||+|+|+. .+++++.++.+.+
T Consensus 11 mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~~~vl~~l~~~l--- 86 (273)
T PRK07680 11 MGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DIYPLLQKLAPHL--- 86 (273)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HHHHHHHHHHhhc---
Confidence 79999999999994 799999999998887664 5666778888899999999999765 7888886543333
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEec--cCHHHHHHHHHHH
Q 022237 75 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSEDAYQAAKPLF 152 (300)
Q Consensus 75 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~--g~~~~~~~~~~ll 152 (300)
.++++||++++.- ..+.+.+.+..+ .++++. +.+.....|...+..+ .+++.++.++++|
T Consensus 87 --~~~~~iis~~ag~--~~~~L~~~~~~~----------~~r~~p----~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll 148 (273)
T PRK07680 87 --TDEHCLVSITSPI--SVEQLETLVPCQ----------VARIIP----SITNRALSGASLFTFGSRCSEEDQQKLERLF 148 (273)
T ss_pred --CCCCEEEEECCCC--CHHHHHHHcCCC----------EEEECC----ChHHHHhhccEEEeeCCCCCHHHHHHHHHHH
Confidence 2347889887633 344555544310 123332 2334455677555555 3567889999999
Q ss_pred HhcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 153 LSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 153 ~~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
+.+|. ++++.+ ......+-.+..++++.++..+.++. .++.|++.++..+++....
T Consensus 149 ~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~~ 206 (273)
T PRK07680 149 SNIST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEML 206 (273)
T ss_pred HcCCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHH
Confidence 99995 566664 33445555556778877777777763 3448999999988877553
No 63
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.50 E-value=7.9e-13 Score=116.73 Aligned_cols=185 Identities=16% Similarity=0.089 Sum_probs=128.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHH-----------HHhCCC-------------CCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMGV-------------PTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~-----------~~~~g~-------------~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..||..|+++||+|++||++++.++. +.+.|. ..++++ +.+++||+||.|+|+
T Consensus 16 mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~d~ViEav~E 94 (286)
T PRK07819 16 MGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADRQLVIEAVVE 94 (286)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCCCEEEEeccc
Confidence 8999999999999999999999998776 344342 245666 568999999999999
Q ss_pred hhhhhhhhcCCCCcccCCCC-CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChHhhhcCce
Q 022237 57 SSHVLDVYNGPNGLLQGGNS-VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v~~~~~~~l~~~~~-~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~~~~~g~~ 134 (300)
+.+++..+.+. ++.. . +++++++..||+.|.+... .... ...++.+.||+++ |+.+.. .+
T Consensus 95 ~~~~K~~l~~~---l~~~-~~~~~~il~snTS~~~~~~la--~~~~------~~~r~~g~hf~~P~~~~~lv------El 156 (286)
T PRK07819 95 DEAVKTEIFAE---LDKV-VTDPDAVLASNTSSIPIMKLA--AATK------RPGRVLGLHFFNPVPVLPLV------EL 156 (286)
T ss_pred CHHHHHHHHHH---HHHh-hCCCCcEEEECCCCCCHHHHH--hhcC------CCccEEEEecCCCcccCceE------EE
Confidence 99988876542 2221 2 4557777666665554433 3222 1233345788874 333332 22
Q ss_pred EEEeccCHHHHHHHHHHHH-hcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 135 TFMVGGSEDAYQAAKPLFL-SMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~-~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
+...+++++.++++.+++. .+|+.++.+++ ..+.....+. ...++|++.+.++...+++++..++..+.+
T Consensus 157 v~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d-~pGfi~nRi~-------~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G 227 (286)
T PRK07819 157 VPTLVTSEATVARAEEFASDVLGKQVVRAQD-RSGFVVNALL-------VPYLLSAIRMVESGFATAEDIDKAMVLGCA 227 (286)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCceEecC-CCChHHHHHH-------HHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 3334568999999999988 59999998876 3334443332 255689999998866789999888766543
No 64
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=112.87 Aligned_cols=165 Identities=17% Similarity=0.208 Sum_probs=113.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC-hhhHHHHHhC-CC-CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN-CNVMKMFSDM-GV-PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~-~~~~~~~~~~-g~-~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||++||++|+++||+|++-+|+ +++.....+. +. ....++.++++.+|+||++||.. .+.+++.++.+.+
T Consensus 12 iG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~-a~~~v~~~l~~~~------ 84 (211)
T COG2085 12 IGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE-AIPDVLAELRDAL------ 84 (211)
T ss_pred HHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH-HHHhHHHHHHHHh------
Confidence 6999999999999999998655 4444444433 32 23468899999999999999998 7788886544333
Q ss_pred CCeEEEEcCCC---------------CHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceE-EEeccC
Q 022237 78 RPQLLIDSSTI---------------DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT-FMVGGS 141 (300)
Q Consensus 78 ~~~ivid~st~---------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~-~~~~g~ 141 (300)
+++||||+++. ..+.++.+++.+++..+.+. |+.+.+..+....... +... +++|.|
T Consensus 85 ~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkA------Fn~i~a~~l~~~~~~~-~~~~v~vagDD 157 (211)
T COG2085 85 GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKA------FNTIPAAVLADLAKPG-GRRDVLVAGDD 157 (211)
T ss_pred CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhh------hcccCHHHhccCCCcC-CceeEEEecCc
Confidence 35899999885 12345566666654322222 3444443333222221 3334 445557
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH
Q 022237 142 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 142 ~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
.++.+++.+|.+.+|..++.+|++..+..+.-+..++.
T Consensus 158 ~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~t~l~i 195 (211)
T COG2085 158 AEAKAVVAELAEDIGFRPLDAGPLENARILEPGTPLLI 195 (211)
T ss_pred HHHHHHHHHHHHhcCcceeecccccccccccccchHHH
Confidence 78999999999999999999999888877776655554
No 65
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.48 E-value=1.4e-12 Score=113.71 Aligned_cols=180 Identities=16% Similarity=0.111 Sum_probs=120.9
Q ss_pred ChHHHHHHHHhCCCe---EEEEcCChhhHHHHHhC--CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGYK---MAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~~---V~~~dr~~~~~~~~~~~--g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||++|+++|.+.|++ +.+|||++++.+.+.+. +...+.++.++++++|+||+|+|+ ..+.+++.++.
T Consensus 11 mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~~~~vl~~l~------- 82 (258)
T PRK06476 11 ITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QIAEEVLRALR------- 82 (258)
T ss_pred HHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HHHHHHHHHhc-------
Confidence 799999999999864 58999999999888765 456677889999999999999995 48888886431
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhc
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM 155 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~l 155 (300)
..++++||+++ .+.+...+.+.+.. . ...+...|.. +.....+. +.++.++ +.++++|+.+
T Consensus 83 ~~~~~~vis~~--ag~~~~~l~~~~~~------~----~~~~r~~P~~--~~a~~~g~-t~~~~~~----~~~~~l~~~l 143 (258)
T PRK06476 83 FRPGQTVISVI--AATDRAALLEWIGH------D----VKLVRAIPLP--FVAERKGV-TAIYPPD----PFVAALFDAL 143 (258)
T ss_pred cCCCCEEEEEC--CCCCHHHHHHHhCC------C----CCEEEECCCC--hhhhCCCC-eEecCCH----HHHHHHHHhc
Confidence 12346888644 44455566655532 0 1245566662 22222333 5555543 5799999999
Q ss_pred CCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 156 GKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 156 g~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
|..++...+ ....+++- + ..+.++..+.++..++++.|+++++..+++....
T Consensus 144 G~~~~~~~e~~~d~~~a~~-s---~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~ 197 (258)
T PRK06476 144 GTAVECDSEEEYDLLAAAS-A---LMATYFGILETATGWLEEQGLKRQKARAYLAPLF 197 (258)
T ss_pred CCcEEECChHhccceeehh-c---cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 987663323 12222221 1 2333345677888889999999999999887553
No 66
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.44 E-value=2e-12 Score=114.20 Aligned_cols=183 Identities=14% Similarity=0.162 Sum_probs=118.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHH-----------HHHhCCC-------------CCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMK-----------MFSDMGV-------------PTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~-----------~~~~~g~-------------~~~~~~~e~~~~adiVii~vp~ 56 (300)
||+++|..|+++|++|++||+++++++ .+.+.|. ..+++.. .+++||+||+|+|.
T Consensus 14 mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~aDlVi~av~e 92 (282)
T PRK05808 14 MGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDADLVIEAATE 92 (282)
T ss_pred HHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeeeecccc
Confidence 899999999999999999999999874 3334442 2244554 47899999999988
Q ss_pred hhhhh-hhhcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVL-DVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~-~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+..++ +++.++...+ ++++++ .++|+.... .+++.+.. ..++.+.||..++...+......+
T Consensus 93 ~~~~k~~~~~~l~~~~-----~~~~il~s~ts~~~~~---~la~~~~~------~~r~ig~h~~~P~~~~~~vev~~g-- 156 (282)
T PRK05808 93 NMDLKKKIFAQLDEIA-----KPEAILATNTSSLSIT---ELAAATKR------PDKVIGMHFFNPVPVMKLVEIIRG-- 156 (282)
T ss_pred cHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCHH---HHHHhhCC------CcceEEeeccCCcccCccEEEeCC--
Confidence 76665 5555443333 344555 233333333 55555532 223334566663322211111111
Q ss_pred EEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 135 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
.+++++.++.+.++++.+|+.++++++ ..+.....+ + ...++|++.+.++.-.+++++..++..+.
T Consensus 157 ---~~t~~e~~~~~~~l~~~lGk~pv~~~d-~~g~i~~Ri---~----~~~~~ea~~~~~~gv~~~~diD~~~~~g~ 222 (282)
T PRK05808 157 ---LATSDATHEAVEALAKKIGKTPVEVKN-APGFVVNRI---L----IPMINEAIFVLAEGVATAEDIDEGMKLGC 222 (282)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCeeEEecC-ccChHHHHH---H----HHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 245789999999999999999999975 333333222 2 35668999999886678999988876543
No 67
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.43 E-value=3.9e-12 Score=110.77 Aligned_cols=158 Identities=16% Similarity=0.244 Sum_probs=110.5
Q ss_pred HHHHHHhCC--CeEEEEcCChhhHHHHHhCCCCCCC-CHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 5 MASNLMKAG--YKMAVHDVNCNVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 5 la~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~~~~-~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
||+.|.++| ++|++||++++.++...+.|+.... +..+.++++|+||+|||.. .+.+++.++.+.+ +++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l~~~~~~~-----~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVLEEIAPYL-----KPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHHHHHHCGS------TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHHHHhhhhc-----CCCcE
Confidence 688999999 6899999999999999888875432 3267899999999999987 7778887654433 45689
Q ss_pred EEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCC----hH----hhhcCceEEEecc---CHHHHHHHH
Q 022237 82 LIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGG----VL----AAEAGTLTFMVGG---SEDAYQAAK 149 (300)
Q Consensus 82 vid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~----~~----~~~~g~~~~~~~g---~~~~~~~~~ 149 (300)
|+|.++++....+.+.+.... ++.|+. +|++|+ +. ....|...+++.. +++.++.++
T Consensus 75 v~Dv~SvK~~~~~~~~~~~~~-----------~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~ 143 (258)
T PF02153_consen 75 VTDVGSVKAPIVEAMERLLPE-----------GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVE 143 (258)
T ss_dssp EEE--S-CHHHHHHHHHHHTS-----------SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhcCc-----------ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHH
Confidence 999999999988888877652 145554 677776 22 2225776777744 457889999
Q ss_pred HHHHhcCCCeEeeCCccHHHHHHHHHHHHH
Q 022237 150 PLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 150 ~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
++++.+|.+++.+.+-..-..+-+++.+-.
T Consensus 144 ~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH 173 (258)
T PF02153_consen 144 ELWEALGARVVEMDAEEHDRIMAYVSHLPH 173 (258)
T ss_dssp HHHHHCT-EEEE--HHHHHHHHHHHTHHHH
T ss_pred HHHHHCCCEEEEcCHHHHHHHHHHHHHHHH
Confidence 999999999998876566666666655444
No 68
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.42 E-value=9e-12 Score=111.36 Aligned_cols=162 Identities=13% Similarity=0.192 Sum_probs=116.6
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCC--CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~--~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||++++..|.+.|+ +|++|||++++.+.+.+.|.. ...++.++++++|+||+|+|.. ...+++.++.+.+
T Consensus 17 mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~~~l~~~l----- 90 (307)
T PRK07502 17 IGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVAAEIAPHL----- 90 (307)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHHHHHHhhC-----
Confidence 79999999999995 899999999998888877753 3457788889999999999987 5666665433222
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChH----hh----hcCceEEEe---ccCHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVL----AA----EAGTLTFMV---GGSEDA 144 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~----~~----~~g~~~~~~---~g~~~~ 144 (300)
+++.+|+|++++++...+.+.+.... +++|+.+ |+.|++. .+ ..|...+++ +++++.
T Consensus 91 ~~~~iv~dvgs~k~~~~~~~~~~~~~-----------~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~ 159 (307)
T PRK07502 91 KPGAIVTDVGSVKASVIAAMAPHLPE-----------GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAA 159 (307)
T ss_pred CCCCEEEeCccchHHHHHHHHHhCCC-----------CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHH
Confidence 34578999999988777666554321 2567774 8876432 11 134434444 457888
Q ss_pred HHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH
Q 022237 145 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 145 ~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
++.++++++.+|.+++++++-.....+-++..+..
T Consensus 160 ~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph 194 (307)
T PRK07502 160 VARLTAFWRALGARVEEMDPEHHDLVLAITSHLPH 194 (307)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHH
Confidence 99999999999999999887555555555554433
No 69
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.39 E-value=1.1e-11 Score=106.99 Aligned_cols=229 Identities=14% Similarity=0.126 Sum_probs=146.7
Q ss_pred CCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 022237 13 GYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 91 (300)
Q Consensus 13 G~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~ 91 (300)
.++|++|+|++++++.+.+. |...+.++.++++++|+||+||+ |.++++++.++...+ .++++||.++.. -
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl~~l~~~~-----~~~~~ivS~~ag--i 80 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVLSELKSEK-----GKDKLLISIAAG--V 80 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHHHHHhhhc-----cCCCEEEEecCC--C
Confidence 46899999999999888664 77777888999999999999998 569999987654322 233677754432 3
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHHhcCCCeEeeCC--ccH
Q 022237 92 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--AGN 167 (300)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~lg~~~~~~g~--~g~ 167 (300)
....+.+.+.. + .. +-.-+...+.....|...+..+. +++..+.++++|+.+|.. +.+.+ +..
T Consensus 81 ~~~~l~~~~~~-------~----~~-ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~v~E~~~~~ 147 (245)
T TIGR00112 81 TLEKLSQLLGG-------T----RR-VVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEV-VELPEALMDA 147 (245)
T ss_pred CHHHHHHHcCC-------C----Ce-EEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCE-EEECHHHcch
Confidence 33345554431 0 11 22223344445555654444442 456778999999999964 45554 777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-CccccccCCCCCCcccCCCCCCCCCCCcchhhHH
Q 022237 168 GAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA-RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA 246 (300)
Q Consensus 168 a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (300)
..++--+.+++.+.++..+.++ +.+.|+++++..+++.+... ..-+......-+.- +.++--.|+..
T Consensus 148 ~talsgsgPA~~~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~----l~~~v~spgGt----- 215 (245)
T TIGR00112 148 VTALSGSGPAYVFLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPAL----LKDQVTSPGGT----- 215 (245)
T ss_pred HHhhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHcCCCCcHH-----
Confidence 7888888999999999888887 88899999999998887642 21111111000111 11112233222
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022237 247 KDLNLALASAKEVGVDCPLTSQAQDIYAKL 276 (300)
Q Consensus 247 kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a 276 (300)
....++..++.|+.--+.+++...++++
T Consensus 216 --T~~gl~~Le~~~~~~~~~~a~~aa~~r~ 243 (245)
T TIGR00112 216 --TIAGLAVLEEKGVRGAVIEAVEAAVRRS 243 (245)
T ss_pred --HHHHHHHHHHCChHHHHHHHHHHHHHHh
Confidence 3455566677777766666666666554
No 70
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.38 E-value=1.7e-11 Score=106.90 Aligned_cols=236 Identities=10% Similarity=0.054 Sum_probs=157.1
Q ss_pred ChHHHHHHHHhCCC----eEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~----~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||++|++.|.++|+ ++++++|++++. +.....++.++++++|+||+|+|.. .+++++.++.+.+
T Consensus 14 mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~-~~~~vl~~i~~~l----- 81 (260)
T PTZ00431 14 MGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPD-LAGKVLLEIKPYL----- 81 (260)
T ss_pred HHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCHH-HHHHHHHHHHhhc-----
Confidence 89999999999873 499999987652 3344567888889999999999765 8899987654433
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc---CHHHHHHHHHHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFL 153 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~ 153 (300)
.++.+|.++++++.+..+++ +.. . .. +-.-+.+.|.....+. ++++.. +++..+.++.+|+
T Consensus 82 ~~~~iIS~~aGi~~~~l~~~---~~~-------~----~~-vvr~mPn~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l~~ 145 (260)
T PTZ00431 82 GSKLLISICGGLNLKTLEEM---VGV-------E----AK-IVRVMPNTPSLVGQGS-LVFCANNNVDSTDKKKVIDIFS 145 (260)
T ss_pred cCCEEEEEeCCccHHHHHHH---cCC-------C----Ce-EEEECCCchhHhccee-EEEEeCCCCCHHHHHHHHHHHH
Confidence 23467889999997766544 221 0 01 1122334444444444 444433 4667899999999
Q ss_pred hcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCC
Q 022237 154 SMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 230 (300)
Q Consensus 154 ~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~ 230 (300)
.+|.. +.+.+ +....++--+.+++++.++..+.++ +.+.|++.++..+++.+.. |..-++.....-|.-
T Consensus 146 ~~G~~-~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~---- 217 (260)
T PTZ00431 146 ACGII-QEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQ---- 217 (260)
T ss_pred hCCcE-EEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----
Confidence 99975 45554 7888888888899999999999988 8899999999999887664 221111111101111
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 022237 231 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 231 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
+.++--+|+-. ....+...++.|+.--+.+++..-++++.+.
T Consensus 218 l~~~v~spgG~-------T~~gl~~le~~g~~~~~~~a~~aa~~r~~~l 259 (260)
T PTZ00431 218 LKDDVCSPGGI-------TIVGLYTLEKHAFKYTVMDAVESACQKSKSM 259 (260)
T ss_pred HHHhCCCCChH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence 11222344332 3445566677888887888887777776654
No 71
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.37 E-value=4.2e-12 Score=107.96 Aligned_cols=165 Identities=22% Similarity=0.210 Sum_probs=106.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------CCC---CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------GVP---TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~---~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
||++++..|+++||+|++|+|++++++.+... |.. ...+..++++++|+||+|+|.+ .+++++.++..
T Consensus 12 mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-~~~~~l~~l~~ 90 (219)
T TIGR01915 12 QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-HVLKTLESLRD 90 (219)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-HHHHHHHHHHH
Confidence 78999999999999999999999988776542 211 1246678899999999999987 77777764432
Q ss_pred cccCCCCCCCeEEEEcCCCCHH---------------HHHHHHHHHhh-hhhhhccCCCCCceEEEeccCCChHhhhcCc
Q 022237 70 LLQGGNSVRPQLLIDSSTIDPQ---------------TSRNISAAVSN-CILKEKKDSWENPVMLDAPVSGGVLAAEAGT 133 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~st~~p~---------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~ 133 (300)
.+ .+++|||+++..+. ..+.+++.+.. ..+.+ .+..+.+.+..++. ...+.
T Consensus 91 ~l------~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVk------a~~~~~a~~~~~~~-~~~~~ 157 (219)
T TIGR01915 91 EL------SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVA------AFHNLSAVLLQDVD-DEVDC 157 (219)
T ss_pred hc------cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEee------ccccCCHHHhcCCC-CCCCC
Confidence 22 23789998764332 12444444431 10000 01122222222211 11123
Q ss_pred eEEEeccCHHHHHHHHHHHHhc-CCCeEeeCCccHHHHHHHHHHHHH
Q 022237 134 LTFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 134 ~~~~~~g~~~~~~~~~~ll~~l-g~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
..+++|.++++.+++..|.+.+ |..++++|++..+..+.....++.
T Consensus 158 ~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~~~~l~~ 204 (219)
T TIGR01915 158 DVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVESLTPLLI 204 (219)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHhHHHHHH
Confidence 2445555678899999999999 999999999877777665544443
No 72
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.36 E-value=3.9e-11 Score=104.80 Aligned_cols=162 Identities=15% Similarity=0.205 Sum_probs=117.7
Q ss_pred ChHHHHHHHHhCCCeEEEE--cCChhhHHHHHhCCCCCC--CCH-HHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGYKMAVH--DVNCNVMKMFSDMGVPTK--ETP-FEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~--dr~~~~~~~~~~~g~~~~--~~~-~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||+++|+.|.++|+.|.+| |++.+......+.|+... .+. .+.+..+|+||+|||-. ++.+++.++...
T Consensus 14 iG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l~~l~~~----- 87 (279)
T COG0287 14 MGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVLKELAPH----- 87 (279)
T ss_pred HHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHHHHhccc-----
Confidence 8999999999999988666 555555555555665432 233 67778899999999997 778888765442
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCCh--HhhhcCceEEEecc---CHHHHHHHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV--LAAEAGTLTFMVGG---SEDAYQAAK 149 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~--~~~~~g~~~~~~~g---~~~~~~~~~ 149 (300)
.++|.+|+|.++++....+.+.+...+. .+|+. +|++|++ .....+...+++-+ +.+.++++.
T Consensus 88 l~~g~iv~Dv~S~K~~v~~a~~~~~~~~-----------~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~ 156 (279)
T COG0287 88 LKKGAIVTDVGSVKSSVVEAMEKYLPGD-----------VRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVK 156 (279)
T ss_pred CCCCCEEEecccccHHHHHHHHHhccCC-----------CeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHH
Confidence 3567999999999999888887765420 24554 6888883 33445665666654 456889999
Q ss_pred HHHHhcCCCeEeeCCccHHHHHHHHHHHHH
Q 022237 150 PLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 150 ~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
++|+.+|.+++++.+-..-..+-.++.+-.
T Consensus 157 ~~~~~~ga~~v~~~~eeHD~~~a~vshLpH 186 (279)
T COG0287 157 RLWEALGARLVEMDAEEHDRVMAAVSHLPH 186 (279)
T ss_pred HHHHHcCCEEEEcChHHHhHHHHHHHHHHH
Confidence 999999999999887566666666655444
No 73
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.35 E-value=4e-11 Score=103.66 Aligned_cols=184 Identities=16% Similarity=0.216 Sum_probs=128.1
Q ss_pred ChHHHHHHHHhCCC---e-EEEEcC-ChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKAGY---K-MAVHDV-NCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G~---~-V~~~dr-~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||.+++..|.++|+ + +++++| ++++.+.+.+. ++..+.++.++++++|+||+|+|++ ..++++.++...+
T Consensus 15 mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~v~~~l~~~~--- 90 (245)
T PRK07634 15 MAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEELLAELSPLL--- 90 (245)
T ss_pred HHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHHHHHHHHhhc---
Confidence 78999999998873 3 778887 57888877654 6666678889999999999999987 7788886544332
Q ss_pred CCCCCeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEec--cCHHHHHHHHHH
Q 022237 75 NSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSEDAYQAAKPL 151 (300)
Q Consensus 75 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~--g~~~~~~~~~~l 151 (300)
. +++||.++ ++... .+.+.+.. + .......|.+ +.....+...+.++ .+++..+.++++
T Consensus 91 --~-~~~vis~~~gi~~~---~l~~~~~~-------~---~~v~r~~Pn~--a~~v~~g~~~~~~~~~~~~~~~~~v~~l 152 (245)
T PRK07634 91 --S-NQLVVTVAAGIGPS---YLEERLPK-------G---TPVAWIMPNT--AAEIGKSISLYTMGQSVNETHKETLQLI 152 (245)
T ss_pred --c-CCEEEEECCCCCHH---HHHHHcCC-------C---CeEEEECCcH--HHHHhcCCeEEeeCCCCCHHHHHHHHHH
Confidence 2 35666554 44444 34444431 0 0112334532 23344454333333 478889999999
Q ss_pred HHhcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 152 FLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 152 l~~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
|+.+|..+. +.+ ....+++--+...+++.++..+.++ +.+.|++.++..+++...
T Consensus 153 f~~~G~~~~-~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 153 LKGIGTSQL-CTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HHhCCCEEE-ECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence 999998765 443 6777777777888888888888887 888999999998888754
No 74
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.32 E-value=9.6e-11 Score=104.57 Aligned_cols=251 Identities=12% Similarity=0.130 Sum_probs=148.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSSSHVLDVYNGP 67 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~ 67 (300)
||+.+|..|+++||+|++|+| +++.+.+.+.|.. ..++..+..+.+|+||+|+|.. ++++++..+
T Consensus 11 iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~-~~~~~~~~l 88 (305)
T PRK12921 11 VGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY-QLDAAIPDL 88 (305)
T ss_pred HHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-CHHHHHHHH
Confidence 699999999999999999999 8888888765531 1335556668999999999987 778887655
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc----CHH
Q 022237 68 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG----SED 143 (300)
Q Consensus 68 ~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g----~~~ 143 (300)
...+ .++++||...+.- .....+.+.+... ....++.+..++..++..-...+.-.+.+|. ..+
T Consensus 89 ~~~~-----~~~~~ii~~~nG~-~~~~~l~~~~~~~------~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~ 156 (305)
T PRK12921 89 KPLV-----GEDTVIIPLQNGI-GQLEQLEPYFGRE------RVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSE 156 (305)
T ss_pred Hhhc-----CCCCEEEEeeCCC-ChHHHHHHhCCcc------cEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCH
Confidence 4433 2335666444321 2223444444321 0011234444444332111111221333443 234
Q ss_pred HHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCC--H
Q 022237 144 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLGIS--A 200 (300)
Q Consensus 144 ~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~---------------------~~~~~~~~Ea~~l~~~~Gi~--~ 200 (300)
..+.+.++|...+..+....++-...-.|++.|... .....++.|+..++++.|++ .
T Consensus 157 ~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~ 236 (305)
T PRK12921 157 RTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRD 236 (305)
T ss_pred HHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCCh
Confidence 566777888887776665566777888888877543 23557789999999999976 3
Q ss_pred HHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 022237 201 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 277 (300)
Q Consensus 201 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 277 (300)
+...+.+..-.... ....+.+.+ |+..+-.. +...=...++++++++|+++|..+.+++++....
T Consensus 237 ~~~~~~~~~~~~~~-----~~~~sSm~~------D~~~gr~t-Eid~i~G~vv~~a~~~gv~~P~~~~l~~~~~~~~ 301 (305)
T PRK12921 237 DVVEEIVKIFAGAP-----GDMKTSMLR------DMEKGRPL-EIDHLQGVLLRRARAHGIPTPILDTVYALLKAYE 301 (305)
T ss_pred hHHHHHHHHHhccC-----CCCCcHHHH------HHHcCCcc-cHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 34444333211000 000111221 11111111 1111135799999999999999999999987653
No 75
>PLN02256 arogenate dehydrogenase
Probab=99.30 E-value=1.3e-10 Score=103.22 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=111.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCC-CCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGP-NGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~-~~~l~~~~~~~ 78 (300)
||+++++.|.+.|++|++||+++.. +.....|+....+..+++ .++|+||+|+|.. .+.+++.++ ... .++
T Consensus 47 mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l~~~~-----l~~ 119 (304)
T PLN02256 47 FGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSLPLQR-----LKR 119 (304)
T ss_pred HHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhhhhhc-----cCC
Confidence 7999999999999999999999743 444456776667788876 4799999999986 778888654 222 235
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHh--hhcCceEEEec-------cCHHHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLA--AEAGTLTFMVG-------GSEDAYQAA 148 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~--~~~g~~~~~~~-------g~~~~~~~~ 148 (300)
+++|+|.++++....+.+.+.+.. +..|+. +|++|.... ...+...++.. .+++..+.+
T Consensus 120 ~~iviDv~SvK~~~~~~~~~~l~~-----------~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 188 (304)
T PLN02256 120 STLFVDVLSVKEFPKNLLLQVLPE-----------EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERF 188 (304)
T ss_pred CCEEEecCCchHHHHHHHHHhCCC-----------CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHH
Confidence 589999999988877777766532 133443 577776532 12233233322 256788999
Q ss_pred HHHHHhcCCCeEeeCCccHHHHHHHHH
Q 022237 149 KPLFLSMGKNTIYCGGAGNGAAAKICN 175 (300)
Q Consensus 149 ~~ll~~lg~~~~~~g~~g~a~~~k~~~ 175 (300)
+++++.+|.+++.+.+-..-..+-.++
T Consensus 189 ~~l~~~lGa~v~~~~~eeHD~~vA~iS 215 (304)
T PLN02256 189 LDIFEEEGCRMVEMSCEEHDRYAAGSQ 215 (304)
T ss_pred HHHHHHCCCEEEEeCHHHHhHHHHhhh
Confidence 999999999999998755555555444
No 76
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.27 E-value=6.8e-11 Score=104.08 Aligned_cols=185 Identities=11% Similarity=0.075 Sum_probs=128.1
Q ss_pred ChHHHHHHHHhCC----CeEEEEcCCh-hhHHHHHhC--CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKAG----YKMAVHDVNC-NVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~G----~~V~~~dr~~-~~~~~~~~~--g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||++++++|.++| ++|.+|+|++ ++.+.+... +.....+..++++++|+||+|+|.. .+++++.++...+
T Consensus 12 mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~-~~~~vl~~l~~~l-- 88 (277)
T PRK06928 12 MADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPL-AVLPLLKDCAPVL-- 88 (277)
T ss_pred HHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHH-HHHHHHHHHHhhc--
Confidence 7999999999998 7899999865 445555443 2334567888899999999999865 8888887654333
Q ss_pred CCCCCCeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHH
Q 022237 74 GNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKP 150 (300)
Q Consensus 74 ~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ 150 (300)
.++++||... ++... ++.+.+.. .. +-.-+...+.....|...+..+. +++..+.++.
T Consensus 89 ---~~~~~ivS~~aGi~~~---~l~~~~~~------------~~-vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~ 149 (277)
T PRK06928 89 ---TPDRHVVSIAAGVSLD---DLLEITPG------------LQ-VSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEE 149 (277)
T ss_pred ---CCCCEEEEECCCCCHH---HHHHHcCC------------CC-EEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHH
Confidence 2335556433 34433 44444421 11 22223444555556654443332 5677889999
Q ss_pred HHHhcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHhcC
Q 022237 151 LFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-GISASTLTKILNSSS 211 (300)
Q Consensus 151 ll~~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~-Gi~~~~~~~~~~~~~ 211 (300)
+|+.+|.. +.+.+ +....++--+..+|++.++.++.++ +.+. |++.++..+++.+..
T Consensus 150 l~~~~G~~-~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~ 209 (277)
T PRK06928 150 TLSHFSHV-MTIREENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFAL 209 (277)
T ss_pred HHHhCCCE-EEEchhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHH
Confidence 99999974 45544 7777888888899998888888888 7787 799999999887664
No 77
>PLN02712 arogenate dehydrogenase
Probab=99.26 E-value=2.1e-10 Score=111.93 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=107.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhh-cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~-~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+++|++|.+.|++|++|||+... +...+.|+....++.+++. .+|+||+|||.. .+.+++.+... .. .+++
T Consensus 380 mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~-~~~~vi~~l~~--~~--lk~g 453 (667)
T PLN02712 380 FGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSIL-STEKVLKSLPF--QR--LKRS 453 (667)
T ss_pred HHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChH-HHHHHHHHHHH--hc--CCCC
Confidence 7999999999999999999999654 4555667766678888775 589999999975 77887765421 01 2456
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcC--ceE-----EEeccCHHH---HHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAG--TLT-----FMVGGSEDA---YQAA 148 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g--~~~-----~~~~g~~~~---~~~~ 148 (300)
++|+|+++++....+.+.+.+.. ++.|+ .+|++|.... ..| ... .+++++.+. .+.+
T Consensus 454 ~ivvDv~SvK~~~~~~~~~~l~~-----------~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l 521 (667)
T PLN02712 454 TLFVDVLSVKEFPRNLFLQHLPQ-----------DFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSF 521 (667)
T ss_pred cEEEECCCccHHHHHHHHHhccC-----------CCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHH
Confidence 89999999986666666555432 25667 7899887643 111 111 234555444 4455
Q ss_pred HHHHHhcCCCeEeeCCccHHHHHHH
Q 022237 149 KPLFLSMGKNTIYCGGAGNGAAAKI 173 (300)
Q Consensus 149 ~~ll~~lg~~~~~~g~~g~a~~~k~ 173 (300)
.++++.+|.+++.+.+-..-..+-.
T Consensus 522 ~~l~~~lGa~vv~ms~eeHD~~~A~ 546 (667)
T PLN02712 522 LDIFAREGCRMVEMSCAEHDWHAAG 546 (667)
T ss_pred HHHHHHcCCEEEEeCHHHHHHHHHH
Confidence 6999999999999876454444443
No 78
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.25 E-value=4e-10 Score=100.48 Aligned_cols=250 Identities=13% Similarity=0.159 Sum_probs=143.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-----------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----------TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
||+.+|..|+++||+|++|+|++++.+.+.+.|.. ...++.+. +.+|+||+|+|.. ++++++..+..
T Consensus 11 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~~~~~~~~l~~ 88 (304)
T PRK06522 11 IGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-QLPAALPSLAP 88 (304)
T ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-cHHHHHHHHhh
Confidence 79999999999999999999999988888776652 23455555 8999999999987 77888876554
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCC--ChHhhhcCceEEEecc-C--HHH
Q 022237 70 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GVLAAEAGTLTFMVGG-S--EDA 144 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g--~~~~~~~g~~~~~~~g-~--~~~ 144 (300)
.+. ++++||...+.- ...+.+.+.+....+ ..++.+..+-..+ .......+. +.+|. + .+.
T Consensus 89 ~l~-----~~~~iv~~~nG~-~~~~~l~~~~~~~~i------~~~~~~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~~~ 154 (304)
T PRK06522 89 LLG-----PDTPVLFLQNGV-GHLEELAAYIGPERV------LGGVVTHAAELEGPGVVRHTGGGR--LKIGEPDGESAA 154 (304)
T ss_pred hcC-----CCCEEEEecCCC-CcHHHHHHhcCcccE------EEEEEEEeeEecCCCEEEEcCCCC--EEEeCCCCCcHH
Confidence 442 234555444422 222334443332100 0011111111111 111122233 22332 2 233
Q ss_pred HHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCC--HH
Q 022237 145 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLGIS--AS 201 (300)
Q Consensus 145 ~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~---------------------~~~~~~~~Ea~~l~~~~Gi~--~~ 201 (300)
.+.+.++|+..+..+....++....-.|++.|... ......+.|+..++++.|++ .+
T Consensus 155 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~ 234 (304)
T PRK06522 155 AEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE 234 (304)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence 56778888887776555555666667776666422 23556789999999999865 34
Q ss_pred HHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 202 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 202 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
.+.+.+....... .. ..+.+.++.. .+.... ...=...++++++++|+++|..+.++++++...+
T Consensus 235 ~~~~~~~~~~~~~--~~---~~sSm~~D~~-~gr~tE------id~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 235 EVREYVRQVIQKT--AA---NTSSMLQDLE-AGRPTE------IDAIVGYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred HHHHHHHHHhhcc--CC---CCchHHHHHH-cCCCcc------cchhccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 4444433221000 00 1111222111 111110 1112366889999999999999999998876644
No 79
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.22 E-value=4.8e-11 Score=98.50 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=85.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------------CCCCCCCHHHHhhcCCEEEEecCChh--
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVVITMLPSSS-- 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--------------------g~~~~~~~~e~~~~adiVii~vp~~~-- 58 (300)
+|.++|..|+++||+|+++|.++++++.+++. ....+.+..++++++|++|+|||+|.
T Consensus 11 vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~ 90 (185)
T PF03721_consen 11 VGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDE 90 (185)
T ss_dssp THHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBET
T ss_pred chHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCccc
Confidence 58999999999999999999999999888653 13456678888999999999999873
Q ss_pred -------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh-
Q 022237 59 -------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE- 130 (300)
Q Consensus 59 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~- 130 (300)
.+++++..+...+ .++++||..||+.|.+++++.+.+-+. ..+...++++..+|.+-.+..+.
T Consensus 91 ~~~~Dls~v~~a~~~i~~~l-----~~~~lvV~~STvppGtt~~~~~~ile~----~~~~~~~f~la~~PErl~~G~a~~ 161 (185)
T PF03721_consen 91 DGSPDLSYVESAIESIAPVL-----RPGDLVVIESTVPPGTTEELLKPILEK----RSGKKEDFHLAYSPERLREGRAIE 161 (185)
T ss_dssp TTSBETHHHHHHHHHHHHHH-----CSCEEEEESSSSSTTHHHHHHHHHHHH----HCCTTTCEEEEE------TTSHHH
T ss_pred cCCccHHHHHHHHHHHHHHH-----hhcceEEEccEEEEeeehHhhhhhhhh----hcccccCCeEEECCCccCCCCcch
Confidence 2334443322222 456899999999999999655444331 11111347788889765443322
Q ss_pred --cCceEEEeccCHH-HHHHHHHH
Q 022237 131 --AGTLTFMVGGSED-AYQAAKPL 151 (300)
Q Consensus 131 --~g~~~~~~~g~~~-~~~~~~~l 151 (300)
...-.++.|.+++ ..+++++|
T Consensus 162 d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 162 DFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp HHHSSSEEEEEESSHHHHHHHHHH
T ss_pred hccCCCEEEEeCCcHHHHHHHhcC
Confidence 2333566666554 43466553
No 80
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.20 E-value=4.9e-10 Score=101.62 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=108.6
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+.+|+.|.+. |++|++||++.+ ...++.+.+++||+||+|+|.. .+.+++.++....+. .+++
T Consensus 16 iGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~~~~~~--l~~~ 81 (370)
T PRK08818 16 YGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIR-HTAALIEEYVALAGG--RAAG 81 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhhhcC--CCCC
Confidence 899999999974 889999998511 2346778899999999999998 777788765443211 2466
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChH-hhhcCceEEEecc-CHHHHHHHHHHHHhcC
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL-AAEAGTLTFMVGG-SEDAYQAAKPLFLSMG 156 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~-~~~~g~~~~~~~g-~~~~~~~~~~ll~~lg 156 (300)
++|+|.++++....+.+.+. +..|+. +|++|++. ....+...+++.. ..+..+.++++++.+|
T Consensus 82 ~iVtDVgSvK~~i~~~~~~~--------------~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~G 147 (370)
T PRK08818 82 QLWLDVTSIKQAPVAAMLAS--------------QAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQ 147 (370)
T ss_pred eEEEECCCCcHHHHHHHHhc--------------CCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcC
Confidence 89999999998777665321 134554 68888753 3345666677765 3455788999999999
Q ss_pred CCeEeeCCccHHHHHHHHHHH
Q 022237 157 KNTIYCGGAGNGAAAKICNNL 177 (300)
Q Consensus 157 ~~~~~~g~~g~a~~~k~~~n~ 177 (300)
.+++.+.+...-..+-.++.+
T Consensus 148 a~v~~~~aeeHD~~~A~vS~L 168 (370)
T PRK08818 148 AECVYATPEHHDRVMALVQAM 168 (370)
T ss_pred CEEEEcCHHHHHHHHHHHHHH
Confidence 999999876666777766533
No 81
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.20 E-value=9.1e-10 Score=94.92 Aligned_cols=222 Identities=14% Similarity=0.162 Sum_probs=156.1
Q ss_pred CeEEEEcCChhhHHHHHhC-------------------CCCCCCCHHHHhhcCCEEEEecCChhhhh-------------
Q 022237 14 YKMAVHDVNCNVMKMFSDM-------------------GVPTKETPFEVAEASDVVITMLPSSSHVL------------- 61 (300)
Q Consensus 14 ~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~adiVii~vp~~~~~~------------- 61 (300)
.+|+++|.|..++..++.. +.-..++.+.+++++|+||+.|.+|.-..
T Consensus 27 i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~ 106 (481)
T KOG2666|consen 27 IEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYW 106 (481)
T ss_pred eEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHH
Confidence 3788999999988877653 23345678899999999999997763221
Q ss_pred -hhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhc---CceEEE
Q 022237 62 -DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA---GTLTFM 137 (300)
Q Consensus 62 -~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~---g~~~~~ 137 (300)
+....+.++ ....+||+.-||+....++.+...+... ..| ..+..++.|.|-.+..+.. ..=.++
T Consensus 107 es~ar~ia~~-----s~~~kivvekstvpv~aaesi~~il~~n----~~~--i~fqilsnpeflaegtaikdl~npdrvl 175 (481)
T KOG2666|consen 107 ESAARMIADV-----SVSDKIVVEKSTVPVKAAESIEKILNHN----SKG--IKFQILSNPEFLAEGTAIKDLFNPDRVL 175 (481)
T ss_pred HHHHHHHHHh-----ccCCeEEEeeccccchHHHHHHHHHhcC----CCC--ceeEeccChHHhcccchhhhhcCCceEE
Confidence 111111111 1344899999999999999999888532 122 1256777886654333222 111577
Q ss_pred eccC--HH---HHHHHHHHHHhcCCC-eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 138 VGGS--ED---AYQAAKPLFLSMGKN-TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 138 ~~g~--~~---~~~~~~~ll~~lg~~-~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
+||+ ++ +.+.+..+++.+-.+ -+.....-+++.-|++.|++.+--+.+++-+.++|++.|.|..++..+++..+
T Consensus 176 igg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatgadv~eva~avg~d~ 255 (481)
T KOG2666|consen 176 IGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATGADVSEVAYAVGTDS 255 (481)
T ss_pred ECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCHHHHHHHhcccc
Confidence 8884 33 555566666666432 23344579999999999999999999999999999999999999988887554
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC
Q 022237 212 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD 262 (300)
Q Consensus 212 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~ 262 (300)
. -++.+++ -.-||...++.||+-.++.+++-+|+|
T Consensus 256 r---------ig~kfl~-------asvgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 256 R---------IGSKFLN-------ASVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred c---------ccHHHhh-------cccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 1 1122221 134788899999999999999999987
No 82
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.18 E-value=5.4e-10 Score=111.38 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=115.0
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHHHHhCCCC--CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~--~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||.++++.|.++| ++|++||+++++++.+.+.|.. ...+..++++++|+||+|+|.. .+++++..+...+
T Consensus 14 mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~~l~~~~----- 87 (735)
T PRK14806 14 IGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLADLKPLL----- 87 (735)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHHHHHHhc-----
Confidence 7999999999999 4899999999998888877764 4456788899999999999986 7888886544333
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceE-EEeccCCChHh--------hhcCceEEEec---cCHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGGVLA--------AEAGTLTFMVG---GSEDA 144 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~g~~~~--------~~~g~~~~~~~---g~~~~ 144 (300)
+++.+|+|++++++...+.+.+.+... .++| ..+|++|++.. -..+...+++. ++++.
T Consensus 88 ~~~~ii~d~~svk~~~~~~l~~~~~~~----------~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~ 157 (735)
T PRK14806 88 SEHAIVTDVGSTKGNVVDAARAVFGEL----------PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAA 157 (735)
T ss_pred CCCcEEEEcCCCchHHHHHHHHhcccc----------CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHH
Confidence 345799999999988888877765421 1444 45788766431 11233344443 46778
Q ss_pred HHHHHHHHHhcCCCeEeeCCccHHHHHHHH
Q 022237 145 YQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 174 (300)
Q Consensus 145 ~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~ 174 (300)
++.++++|+.+|..++++.+-.....+-++
T Consensus 158 ~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~ 187 (735)
T PRK14806 158 LARVDRLWRAVGADVLHMDVAHHDEVLAAT 187 (735)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHh
Confidence 899999999999988888763333333333
No 83
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.18 E-value=3e-10 Score=99.85 Aligned_cols=184 Identities=13% Similarity=0.168 Sum_probs=122.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||+.||..++..|++|+++|++++.+++... .| +....++. ++++||+||.++|.
T Consensus 14 MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E 92 (307)
T COG1250 14 MGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKDADLVIEAVVE 92 (307)
T ss_pred hhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-HhccCCEEEEeccc
Confidence 9999999999988999999999776543322 22 22333333 68999999999999
Q ss_pred hhhhhhh-hcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v-~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+.+++.- +.+++.+. +++.|+- ++|+.++. ++++.+.+ +.++.+.||+.+|..........|.
T Consensus 93 ~levK~~vf~~l~~~~-----~~~aIlASNTSsl~it---~ia~~~~r------per~iG~HFfNP~~~m~LVEvI~g~- 157 (307)
T COG1250 93 DLELKKQVFAELEALA-----KPDAILASNTSSLSIT---ELAEALKR------PERFIGLHFFNPVPLMPLVEVIRGE- 157 (307)
T ss_pred cHHHHHHHHHHHHhhc-----CCCcEEeeccCCCCHH---HHHHHhCC------chhEEEEeccCCCCcceeEEEecCC-
Confidence 9888654 44444443 2323332 44444444 55555532 3445567888766444322222221
Q ss_pred EEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 135 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
-.+++.++++.++.+.+|+.++...+ -.+.....+.- ....|+..+..+...+++++..++..+.|
T Consensus 158 ----~T~~e~~~~~~~~~~~igK~~vv~~D-~pGFi~NRil~-------~~~~eA~~l~~eGva~~e~ID~~~~~~~G 223 (307)
T COG1250 158 ----KTSDETVERVVEFAKKIGKTPVVVKD-VPGFIVNRLLA-------ALLNEAIRLLEEGVATPEEIDAAMRQGLG 223 (307)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCCEeecC-CCceehHhHHH-------HHHHHHHHHHHhCCCCHHHHHHHHHhccC
Confidence 12688999999999999987755454 44445444433 45589999999988999999999887654
No 84
>PLN02712 arogenate dehydrogenase
Probab=99.15 E-value=1.3e-09 Score=106.37 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=109.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+.+++.|.+.|++|++|||+... ....+.|+....++.+++ .++|+||+|||.. .+.+++.++. ... .+++
T Consensus 63 mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~-~~~~vl~~l~--~~~--l~~g 136 (667)
T PLN02712 63 YGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSII-STENVLKSLP--LQR--LKRN 136 (667)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHH-HHHHHHHhhh--hhc--CCCC
Confidence 7999999999999999999998554 455566777777888865 5699999999976 8888887642 111 2456
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHh--hhcCceEEEec---c-CH---HHHHHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLA--AEAGTLTFMVG---G-SE---DAYQAAK 149 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~--~~~g~~~~~~~---g-~~---~~~~~~~ 149 (300)
++|+|+++++....+.+.+.+.. ++.|+ .+|++|.... ...+...++.+ + ++ +..+.++
T Consensus 137 ~iVvDv~SvK~~~~~~l~~~l~~-----------~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (667)
T PLN02712 137 TLFVDVLSVKEFAKNLLLDYLPE-----------DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFL 205 (667)
T ss_pred eEEEECCCCcHHHHHHHHHhcCC-----------CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHH
Confidence 89999999998777767666542 13444 4788887632 12233234442 2 22 3456677
Q ss_pred HHHHhcCCCeEeeCCccHHHHHHHHH
Q 022237 150 PLFLSMGKNTIYCGGAGNGAAAKICN 175 (300)
Q Consensus 150 ~ll~~lg~~~~~~g~~g~a~~~k~~~ 175 (300)
++|+.+|.+++.+.+-..-..+-.++
T Consensus 206 ~l~~~lGa~v~~ms~eeHD~~~A~vs 231 (667)
T PLN02712 206 EVFEREGCKMVEMSCTEHDKYAAESQ 231 (667)
T ss_pred HHHHHcCCEEEEeCHHHHHHHHHHHH
Confidence 99999999999997655554444444
No 85
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.11 E-value=6.6e-10 Score=109.65 Aligned_cols=184 Identities=14% Similarity=0.121 Sum_probs=120.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..||..++.+||+|++||++++.++.. .+.| +..+.+. +.+++||+||-|+|.
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~E 402 (715)
T PRK11730 324 MGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERVDVVVEAVVE 402 (715)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEecccC
Confidence 89999999999999999999999876432 1112 2334455 557999999999999
Q ss_pred hhhhhhh-hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceE
Q 022237 57 SSHVLDV-YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 135 (300)
Q Consensus 57 ~~~~~~v-~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~ 135 (300)
+.+++.- +.+++.++ +++.|+. |+++.-...++++.+.. +.++.+.||+.+|..-.......+.
T Consensus 403 ~l~~K~~vf~~l~~~~-----~~~~ila--sNTSsl~i~~la~~~~~------p~r~~g~Hff~P~~~~~lVEvv~g~-- 467 (715)
T PRK11730 403 NPKVKAAVLAEVEQKV-----REDTILA--SNTSTISISLLAKALKR------PENFCGMHFFNPVHRMPLVEVIRGE-- 467 (715)
T ss_pred cHHHHHHHHHHHHhhC-----CCCcEEE--EcCCCCCHHHHHhhcCC------CccEEEEecCCcccccceEEeeCCC--
Confidence 9887654 44344443 3333443 33333333355555542 3445556777655333221111111
Q ss_pred EEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 136 FMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 136 ~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
..+++.++.+..+++.+|+.++.+.+ ..+.....+.- ..++|++.+.++ |.+++++..++..+.|
T Consensus 468 ---~T~~~~~~~~~~~~~~lgk~pv~v~d-~pGfv~nRi~~-------~~~~ea~~lv~~-Ga~~e~ID~a~~~~~G 532 (715)
T PRK11730 468 ---KTSDETIATVVAYASKMGKTPIVVND-CPGFFVNRVLF-------PYFAGFSQLLRD-GADFRQIDKVMEKQFG 532 (715)
T ss_pred ---CCCHHHHHHHHHHHHHhCCceEEecC-cCchhHHHHHH-------HHHHHHHHHHHc-CCCHHHHHHHHHhhCC
Confidence 23789999999999999999998865 44555544433 345799888876 4999999888876543
No 86
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.10 E-value=7e-10 Score=109.30 Aligned_cols=183 Identities=14% Similarity=0.142 Sum_probs=121.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..||..++.+|++|+++|++++.+++..+ .| +..+.+. +.+++||+||-|||.
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~E 402 (714)
T TIGR02437 324 MGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDNVDIVVEAVVE 402 (714)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEEcCcc
Confidence 8999999999999999999999987654321 11 2334455 457999999999999
Q ss_pred hhhhhh-hhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+.+++. ++.+++.+. ++++|+. ++|+.+. .++++.+.+ +.++.+.||+.+|..-.......|.
T Consensus 403 ~l~~K~~vf~~l~~~~-----~~~~ilasnTS~l~i---~~ia~~~~~------p~r~ig~Hff~P~~~~~lvEvv~g~- 467 (714)
T TIGR02437 403 NPKVKAAVLAEVEQHV-----REDAILASNTSTISI---SLLAKALKR------PENFCGMHFFNPVHRMPLVEVIRGE- 467 (714)
T ss_pred cHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCH---HHHHhhcCC------cccEEEEecCCCcccCceEeecCCC-
Confidence 988765 444444443 3333433 3333333 355555442 4455567777755333322211111
Q ss_pred EEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 135 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
..+++.++.+.++++.+|+.++.+.+ ..+.....+.- ..+.|++.+.++ |.+++++.+++..+.|
T Consensus 468 ----~Ts~~~~~~~~~~~~~lgk~pv~v~d-~pGfi~NRl~~-------~~~~ea~~l~~e-G~~~~~ID~a~~~~~G 532 (714)
T TIGR02437 468 ----KSSDETIATVVAYASKMGKTPIVVND-CPGFFVNRVLF-------PYFGGFSKLLRD-GADFVRIDKVMEKQFG 532 (714)
T ss_pred ----CCCHHHHHHHHHHHHHcCCEEEEeCC-cccchHHHHHH-------HHHHHHHHHHHC-CCCHHHHHHHHHhcCC
Confidence 23689999999999999999999875 44444443322 445899999876 6999999888876543
No 87
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.10 E-value=4.1e-09 Score=93.94 Aligned_cols=182 Identities=15% Similarity=0.088 Sum_probs=111.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH-HHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~-~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||.++|++|...|++|++++++.++. +...+.|.... ++.+++++||+|+++||+. ...+++.+ .+.+. .+++
T Consensus 28 mG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~-~~~~V~~~--~I~~~--Lk~g 101 (330)
T PRK05479 28 QGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDE-VQAEVYEE--EIEPN--LKEG 101 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHH-HHHHHHHH--HHHhc--CCCC
Confidence 79999999999999999988775544 33444576554 8899999999999999987 45777731 13322 3456
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCCh-Hh----hhcCceEEE-eccC--HHHHHHHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGV-LA----AEAGTLTFM-VGGS--EDAYQAAKP 150 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~-~~----~~~g~~~~~-~~g~--~~~~~~~~~ 150 (300)
++|+.+++......+ ...+. ++.++ -+|-..+. .. ...|...++ +..| .++.+.+..
T Consensus 102 ~iL~~a~G~~i~~~~---~~p~~-----------~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~ 167 (330)
T PRK05479 102 AALAFAHGFNIHFGQ---IVPPA-----------DVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALA 167 (330)
T ss_pred CEEEECCCCChhhce---eccCC-----------CCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHH
Confidence 788877775544321 11110 12222 23432221 11 234554455 4555 788999999
Q ss_pred HHHhcCCCeE-----eeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 022237 151 LFLSMGKNTI-----YCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 204 (300)
Q Consensus 151 ll~~lg~~~~-----~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~ 204 (300)
+++.+|.... .+.+ .... ...- +..+..+...++..++....++|.+|+..+
T Consensus 168 l~~aiG~~~~g~~~ttf~~e~~~d-l~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 168 YAKGIGGTRAGVIETTFKEETETD-LFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred HHHHcCCCccceeeeeeccccccc-chhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999998754 1211 1011 0000 222333444677777888999999988743
No 88
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.03 E-value=1.1e-08 Score=90.57 Aligned_cols=246 Identities=13% Similarity=0.149 Sum_probs=139.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC--------------CCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~--------------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||+.+|..|+++||+|++|+|+ ++.+.+.+.|.. ...++++ ....|+||+||+.. ++++++..
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~-~~~~~l~~ 78 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAY-QTEEAAAL 78 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccch-hHHHHHHH
Confidence 7999999999999999999997 667777765521 1123344 56899999999887 77888776
Q ss_pred CCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCC--hHhhhcCceEEEecc-C-
Q 022237 67 PNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEAGTLTFMVGG-S- 141 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~st-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~--~~~~~~g~~~~~~~g-~- 141 (300)
+.+.+. ++++|+-..+ .... +.+.+.+... ..+.++.+..+-..++ ......+. +.+|. +
T Consensus 79 l~~~l~-----~~~~iv~~qNG~g~~--~~l~~~~~~~------~v~~g~~~~~~~~~~pg~v~~~~~~~--~~iG~~~~ 143 (293)
T TIGR00745 79 LLPLIG-----KNTKVLFLQNGLGHE--ERLRELLPAR------RILGGVVTHGAVREEPGVVHHAGLGA--TKIGDYVG 143 (293)
T ss_pred hHhhcC-----CCCEEEEccCCCCCH--HHHHHHhCcc------CEEEEEEEEeeEEcCCcEEEEecccc--EEEecCCC
Confidence 555542 2245554443 3322 3344433221 0000111222111111 11111222 23343 2
Q ss_pred -HHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcCCC
Q 022237 142 -EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT---------------------MAVSMLGVSEALTLGQSLGIS 199 (300)
Q Consensus 142 -~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~---------------------~~~~~~~~~Ea~~l~~~~Gi~ 199 (300)
.+..+.+.++|+..+..+....++-...-.|++.|.. ......++.|+..++++.|++
T Consensus 144 ~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~ 223 (293)
T TIGR00745 144 ENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVD 223 (293)
T ss_pred chHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCC
Confidence 2445667777777776666656666666777665542 233556789999999999965
Q ss_pred --HHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022237 200 --ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 276 (300)
Q Consensus 200 --~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a 276 (300)
.+.+.+.+..-...+. . ..+.+.+ |+..+-.. +...=...+++.++++|+++|..+.++++++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~--~---~~sSm~~------D~~~gr~t-Eid~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 224 LPDDEVEELVRAVIRMTA--E---NTSSMLQ------DLLRGRRT-EIDAINGAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred CCHHHHHHHHHHHHhcCC--C---CCChHHH------HHHcCCcc-hHHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 3334444332110000 0 0111221 22111111 122224778899999999999999999988654
No 89
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.02 E-value=1.4e-09 Score=107.46 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=118.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..||..++.+|++|++||++++.+++..+ .| +..+.+. +.+++||+||-+||.
T Consensus 346 MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEAv~E 424 (737)
T TIGR02441 346 MGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKNADMVIEAVFE 424 (737)
T ss_pred hHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhccCCeehhhccc
Confidence 8999999999999999999999987654322 11 3334455 467899999999999
Q ss_pred hhhhhhh-hcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v-~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+.+++.- +.+++.++ +++.|+. ++|+.++. ++++.+.+ +.++.+.||+.+|..-.......+.
T Consensus 425 ~l~~K~~vf~~l~~~~-----~~~~ilasNTSsl~i~---~la~~~~~------p~r~ig~Hff~P~~~m~LvEvv~g~- 489 (737)
T TIGR02441 425 DLSLKHKVIKEVEAVV-----PPHCIIASNTSALPIK---DIAAVSSR------PEKVIGMHYFSPVDKMQLLEIITHD- 489 (737)
T ss_pred cHHHHHHHHHHHHhhC-----CCCcEEEEcCCCCCHH---HHHhhcCC------ccceEEEeccCCcccCceEEEeCCC-
Confidence 9887664 44444443 3334443 44444444 55555542 3445557777654333221111111
Q ss_pred EEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 135 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
..+++.++.+..+++.+|+.++.+++ ..+.....+.. ..+.|++.+.++ |++++++..++.
T Consensus 490 ----~Ts~~~~~~~~~~~~~lgk~pv~v~d-~pGFi~NRi~~-------~~~~ea~~lv~e-Gv~~~~ID~a~~ 550 (737)
T TIGR02441 490 ----GTSKDTLASAVAVGLKQGKVVIVVKD-GPGFYTTRCLG-------PMLAEVIRLLQE-GVDPKKLDKLTT 550 (737)
T ss_pred ----CCCHHHHHHHHHHHHHCCCeEEEECC-cCCchHHHHHH-------HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 23788999999999999999998876 44444433332 556899888866 789999988753
No 90
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.01 E-value=2.9e-09 Score=104.94 Aligned_cols=179 Identities=17% Similarity=0.116 Sum_probs=117.5
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChhhHHHHH-----------hCC-------------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~adiVii~vp 55 (300)
||..||..++ ++|++|++||++++.++... +.| +..+++. +.+++||+||-|+|
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~adlViEav~ 393 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFKDVDIVIEAVF 393 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhccCCEEEEecc
Confidence 8999999998 58999999999998654431 111 2334455 56799999999999
Q ss_pred Chhhhhh-hhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCc
Q 022237 56 SSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 133 (300)
Q Consensus 56 ~~~~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~ 133 (300)
.+.+++. ++.+++.+. ++++|+. ++|+.++. ++++.+.. +.++.+.||+.+|-.........+.
T Consensus 394 E~l~~K~~v~~~l~~~~-----~~~~ilasnTS~l~i~---~la~~~~~------p~r~~g~HffnP~~~~~lVEvv~g~ 459 (699)
T TIGR02440 394 EDLALKHQMVKDIEQEC-----AAHTIFASNTSSLPIG---QIAAAASR------PENVIGLHYFSPVEKMPLVEVIPHA 459 (699)
T ss_pred ccHHHHHHHHHHHHhhC-----CCCcEEEeCCCCCCHH---HHHHhcCC------cccEEEEecCCccccCceEEEeCCC
Confidence 9988765 444444443 2333443 33344433 55555432 3445557777755433322211111
Q ss_pred eEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 134 LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 134 ~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
..+++.++.+..+++.+|+.++.+.+ ..+.....+.- ..++|++.+.++ |++++++..++.
T Consensus 460 -----~T~~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~nRl~~-------~~~~Ea~~l~~~-G~~~~dID~a~~ 520 (699)
T TIGR02440 460 -----GTSEQTIATTVALAKKQGKTPIVVAD-KAGFYVNRILA-------PYMNEAARLLLE-GEPVEHIDKALV 520 (699)
T ss_pred -----CCCHHHHHHHHHHHHHcCCeEEEEcc-ccchHHHHHHH-------HHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 23789999999999999999999865 34444443333 556899888875 689999988874
No 91
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.01 E-value=2.7e-09 Score=105.38 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=117.6
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChhhHHHHH-----------hCC-------------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~adiVii~vp 55 (300)
||..||..++ .+|++|+++|++++.++... +.| +..+++. +++++||+||-|+|
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~ 398 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFKHADVVIEAVF 398 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhccCCEEeeccc
Confidence 8999999999 88999999999988654431 111 2334454 56799999999999
Q ss_pred Chhhhhhh-hcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCc
Q 022237 56 SSSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 133 (300)
Q Consensus 56 ~~~~~~~v-~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~ 133 (300)
.+..++.- +.+++..+ ++++++. ++|+.++. ++++.+.. +.++.+.||+.+|-.........+.
T Consensus 399 E~~~~K~~v~~~le~~~-----~~~~ilasnTS~l~i~---~la~~~~~------p~r~ig~Hff~P~~~~~lVEvv~g~ 464 (708)
T PRK11154 399 EDLALKQQMVAEVEQNC-----APHTIFASNTSSLPIG---QIAAAAAR------PEQVIGLHYFSPVEKMPLVEVIPHA 464 (708)
T ss_pred ccHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCHH---HHHHhcCc------ccceEEEecCCccccCceEEEECCC
Confidence 99887654 43334333 3334444 33333333 55554432 3445567777655433222111111
Q ss_pred eEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 134 LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 134 ~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
..+++.++.+..+++.+|+.++.+.+ ..+.....+.- ..++|++.+.++ |++++++..++.
T Consensus 465 -----~Ts~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~nRl~~-------~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 465 -----KTSAETIATTVALAKKQGKTPIVVRD-GAGFYVNRILA-------PYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred -----CCCHHHHHHHHHHHHHcCCceEEEec-cCcHHHHHHHH-------HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 23789999999999999999998865 44555544433 455899988887 789999877765
No 92
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.01 E-value=3.2e-08 Score=88.73 Aligned_cols=250 Identities=12% Similarity=0.057 Sum_probs=140.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-------------CCCHHHHhhcCCEEEEecCChhhhhhhhcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------------KETPFEVAEASDVVITMLPSSSHVLDVYNGP 67 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------------~~~~~e~~~~adiVii~vp~~~~~~~v~~~~ 67 (300)
||+.+|..|+++||+|++|.|++. +.+...|... ..+..+....+|+||+||+.. ++.+++..+
T Consensus 16 iG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~~~~~~~l 92 (313)
T PRK06249 16 IGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT-ANALLAPLI 92 (313)
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-ChHhHHHHH
Confidence 699999999999999999999863 3444443211 111223457899999999887 667777655
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCCh--HhhhcCceEEE-ecc-C--
Q 022237 68 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV--LAAEAGTLTFM-VGG-S-- 141 (300)
Q Consensus 68 ~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~--~~~~~g~~~~~-~~g-~-- 141 (300)
.+.+. +. .+|+..-+.- ...+.+.+.+.+.. .+.++.++.+...++. .....|.+.+- ..+ +
T Consensus 93 ~~~~~----~~-~~iv~lqNG~-~~~e~l~~~~~~~~------v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~ 160 (313)
T PRK06249 93 PQVAA----PD-AKVLLLQNGL-GVEEQLREILPAEH------LLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAAD 160 (313)
T ss_pred hhhcC----CC-CEEEEecCCC-CcHHHHHHHCCCCc------EEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCccc
Confidence 44442 22 3454433322 22234444443210 0111233333222211 11222332221 122 2
Q ss_pred ---HHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcC
Q 022237 142 ---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLG 197 (300)
Q Consensus 142 ---~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~---------------------~~~~~~~~Ea~~l~~~~G 197 (300)
.+..+.+.++|+..|..+....++....-.|++.|... ......+.|+.+++++.|
T Consensus 161 ~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G 240 (313)
T PRK06249 161 DGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACG 240 (313)
T ss_pred chHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcC
Confidence 35567788888888877776677777777777766432 235567899999999999
Q ss_pred CCH--HHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022237 198 ISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 275 (300)
Q Consensus 198 i~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~ 275 (300)
++. +.+.+++......+ . ..+.|.+ |+..+... +...=...++++++++|+++|..+.++.+++.
T Consensus 241 i~~~~~~~~~~~~~~~~~~---~---~~sSM~q------D~~~gr~t-Eid~i~G~vv~~a~~~Gi~~P~~~~l~~~l~~ 307 (313)
T PRK06249 241 HTLPEGYADHMLAVTERMP---D---YRPSMYH------DFEEGRPL-ELEAIYANPLAAARAAGCAMPRVEMLYQALEF 307 (313)
T ss_pred CCCChhHHHHHHHHhhcCC---C---CCChHHH------HHHCCCcc-cHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 762 22222222111000 0 1122222 22221111 11122478899999999999999999988776
Q ss_pred HHH
Q 022237 276 LCE 278 (300)
Q Consensus 276 a~~ 278 (300)
...
T Consensus 308 ~e~ 310 (313)
T PRK06249 308 LDR 310 (313)
T ss_pred HHh
Confidence 543
No 93
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.99 E-value=2e-10 Score=94.54 Aligned_cols=141 Identities=16% Similarity=0.274 Sum_probs=86.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C-------------CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..+|..++.+|++|.+||++++.++...+ . .+...++++++. +||+||-|+|.
T Consensus 10 mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~adlViEai~E 88 (180)
T PF02737_consen 10 MGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DADLVIEAIPE 88 (180)
T ss_dssp HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TESEEEE-S-S
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hhheehhhccc
Confidence 8999999999999999999999987644322 1 234567888877 99999999999
Q ss_pred hhhhhhh-hcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v-~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+..++.- +.+++... +++.++. ++|+.+ ..++++.+.+ +.++.+.||+.+|.......
T Consensus 89 ~l~~K~~~~~~l~~~~-----~~~~ilasnTSsl~---i~~la~~~~~------p~R~ig~Hf~~P~~~~~lVE------ 148 (180)
T PF02737_consen 89 DLELKQELFAELDEIC-----PPDTILASNTSSLS---ISELAAALSR------PERFIGMHFFNPPHLMPLVE------ 148 (180)
T ss_dssp SHHHHHHHHHHHHCCS------TTSEEEE--SSS----HHHHHTTSST------GGGEEEEEE-SSTTT--EEE------
T ss_pred cHHHHHHHHHHHHHHh-----CCCceEEecCCCCC---HHHHHhccCc------CceEEEEecccccccCceEE------
Confidence 9877654 43334333 3334444 333333 3355554432 33445577776543222111
Q ss_pred EEEe--ccCHHHHHHHHHHHHhcCCCeEeeC
Q 022237 135 TFMV--GGSEDAYQAAKPLFLSMGKNTIYCG 163 (300)
Q Consensus 135 ~~~~--~g~~~~~~~~~~ll~~lg~~~~~~g 163 (300)
++. ..+++.++.+..+++.+|+.++.+.
T Consensus 149 -vv~~~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 149 -VVPGPKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp -EEE-TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred -EeCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 222 2378999999999999999988764
No 94
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.98 E-value=2.2e-10 Score=92.26 Aligned_cols=131 Identities=17% Similarity=0.244 Sum_probs=85.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||+++|..|+++||+|++|.|+++.++.+.+.+ ...+++++++++++|+|+++||.. ..++++.+
T Consensus 10 ~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~-~~~~~~~~ 88 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ-AHREVLEQ 88 (157)
T ss_dssp HHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG-GHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH-HHHHHHHH
Confidence 699999999999999999999999998887642 335678899999999999999997 88999987
Q ss_pred CCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHH
Q 022237 67 PNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED 143 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~st-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~ 143 (300)
+...+. +++++|.++. ..+.+...+.+.+.+. .+. ..+.++.+|.+..+......+..++.+.|.+
T Consensus 89 l~~~l~-----~~~~ii~~~KG~~~~~~~~~~~~i~~~-----~~~-~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 89 LAPYLK-----KGQIIISATKGFEPGTLLLLSEVIEEI-----LPI-PRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp HTTTSH-----TT-EEEETS-SEETTEEEEHHHHHHHH-----HSS-CGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred HhhccC-----CCCEEEEecCCcccCCCccHHHHHHHH-----hhh-cceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 666653 3466676553 3343333344443321 000 0167788888877666665665566666654
No 95
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.94 E-value=9e-10 Score=84.78 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=61.6
Q ss_pred ChHHHHHHHHhCCCeEEE-EcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAV-HDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~-~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
+|.+|++.|.++||+|.. |+|+++..+++.+. +.....++.|+++++|++||+|||+ ++.++..++...- ...+
T Consensus 21 VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~~La~~~---~~~~ 96 (127)
T PF10727_consen 21 VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVAEQLAQYG---AWRP 96 (127)
T ss_dssp CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHHHHHHCC-----S-T
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHHHHHHHhc---cCCC
Confidence 478999999999999875 59999888777665 4445567788999999999999998 8888887643321 1346
Q ss_pred CeEEEEcCCCCHHHHHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRNISA 98 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~ 98 (300)
+++|++||+..+....+-.+
T Consensus 97 g~iVvHtSGa~~~~vL~p~~ 116 (127)
T PF10727_consen 97 GQIVVHTSGALGSDVLAPAR 116 (127)
T ss_dssp T-EEEES-SS--GGGGHHHH
T ss_pred CcEEEECCCCChHHhhhhHH
Confidence 79999999988876655443
No 96
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.92 E-value=2.2e-08 Score=89.30 Aligned_cols=183 Identities=17% Similarity=0.111 Sum_probs=115.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcC-ChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr-~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||.++|++|.++|++|+++++ ++++.+.+.+.|+.. .++.++++++|+|++++|+..+...+..++.+.+ .++
T Consensus 14 mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l-----~~g 87 (314)
T TIGR00465 14 QGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLL-----KEG 87 (314)
T ss_pred HHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhC-----CCC
Confidence 799999999999999887654 455667776777765 4688899999999999998745554543333222 234
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCce-EEEeccCCCh-H----hhhcCceEEE-ecc--CHHHHHHHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAPVSGGV-L----AAEAGTLTFM-VGG--SEDAYQAAKP 150 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pv~g~~-~----~~~~g~~~~~-~~g--~~~~~~~~~~ 150 (300)
++|.-+.+..... +...++. +.. +..+|-..+. . ....|...++ +.. +.+..+.+..
T Consensus 88 ~iVs~aaG~~i~~---~~~~~~~-----------~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~ 153 (314)
T TIGR00465 88 KTLGFSHGFNIHF---VQIVPPK-----------DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALA 153 (314)
T ss_pred cEEEEeCCccHhh---ccccCCC-----------CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHH
Confidence 5555555554332 2222221 122 2234433222 1 0134554443 333 5678899999
Q ss_pred HHHhcCCC-------eE--eeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 151 LFLSMGKN-------TI--YCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 151 ll~~lg~~-------~~--~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
+++.+|.. .+ .+.+ .+...++.-+...+++..+ |++ .+.|++++..+......
T Consensus 154 ~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~----eal---v~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 154 YAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGF----DTL---VEAGYQPELAYFETVHE 217 (314)
T ss_pred HHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHH----HHH---HHcCCCHHHHHHHHHHH
Confidence 99999986 32 3322 6666777767777775544 554 68899999988776544
No 97
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.85 E-value=2.2e-09 Score=78.96 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=62.6
Q ss_pred ChHHHHHHHHhCC---CeEEEE-cCChhhHHHHHhC-CCCCCC-CHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKAG---YKMAVH-DVNCNVMKMFSDM-GVPTKE-TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G---~~V~~~-dr~~~~~~~~~~~-g~~~~~-~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||.+|+++|.++| ++|+++ +|++++.+++.+. +..... +..|+++++|+||+|||.. .+.+++.++ ..
T Consensus 10 mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~~~i-~~---- 83 (96)
T PF03807_consen 10 MGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVLSEI-PH---- 83 (96)
T ss_dssp HHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHHHHH-HH----
T ss_pred HHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHHHHH-hh----
Confidence 7999999999999 899955 9999999998655 555555 8999999999999999876 888888764 11
Q ss_pred CCCCCeEEEEcCC
Q 022237 75 NSVRPQLLIDSST 87 (300)
Q Consensus 75 ~~~~~~ivid~st 87 (300)
..+++++|+++.
T Consensus 84 -~~~~~~vis~~a 95 (96)
T PF03807_consen 84 -LLKGKLVISIAA 95 (96)
T ss_dssp -HHTTSEEEEEST
T ss_pred -ccCCCEEEEeCC
Confidence 234489998653
No 98
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.77 E-value=1.5e-07 Score=68.80 Aligned_cols=93 Identities=23% Similarity=0.242 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 245 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (300)
..|+.+|+..|.+.+..++.++|...+|++.|+|..++.++++.....+ .....| .++|...+.
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~--~~~~~p--------------g~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG--PHYLRP--------------GPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT--SSS-S---------------SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc--cccCCC--------------CCCCCCcch
Confidence 4689999999999999999999999999999999999999998764211 001111 235667799
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022237 246 AKDLNLALASAKEVGVDCPLTSQAQDIYA 274 (300)
Q Consensus 246 ~kd~~~~~~~a~~~g~~~~~~~~~~~~~~ 274 (300)
.||...+...+++.|.+.++++++.+.-+
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999999999998876543
No 99
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.66 E-value=7.8e-08 Score=79.47 Aligned_cols=186 Identities=13% Similarity=0.186 Sum_probs=122.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----------------------------CCCCCCCHHHHhhcCCEEE
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----------------------------GVPTKETPFEVAEASDVVI 51 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----------------------------g~~~~~~~~e~~~~adiVi 51 (300)
||+.||+.-+.+||+|+++|+|++.+.+..+. .++.+++..+++.++|+||
T Consensus 22 MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadlii 101 (298)
T KOG2304|consen 22 MGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLII 101 (298)
T ss_pred cchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHHH
Confidence 89999999999999999999999876554331 1345667788899999999
Q ss_pred EecCChhhhhhhhc-CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEec-cCCChHhh
Q 022237 52 TMLPSSSHVLDVYN-GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP-VSGGVLAA 129 (300)
Q Consensus 52 i~vp~~~~~~~v~~-~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-v~g~~~~~ 129 (300)
-++-....++.-++ .++.. .++..++. |+++.-....++..+++ ..++.|.||+.++ +.- ....
T Consensus 102 EAivEn~diK~~lF~~l~~~-----ak~~~il~--tNTSSl~lt~ia~~~~~------~srf~GlHFfNPvPvMK-LvEV 167 (298)
T KOG2304|consen 102 EAIVENLDIKRKLFKDLDKI-----AKSSTILA--TNTSSLSLTDIASATQR------PSRFAGLHFFNPVPVMK-LVEV 167 (298)
T ss_pred HHHHHhHHHHHHHHHHHHhh-----cccceEEe--ecccceeHHHHHhhccC------hhhhceeeccCCchhHH-Hhhh
Confidence 98877766654433 22222 23334443 44443334455555543 3445567887743 221 1111
Q ss_pred hcCceEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 022237 130 EAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 209 (300)
Q Consensus 130 ~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 209 (300)
.+.. -..++.+..+..+-+.+|+.++.+-+ -.+..+. -++ +-.+.|++++.++...+.+++..++..
T Consensus 168 ir~~-----~TS~eTf~~l~~f~k~~gKttVackD-tpGFIVN---RlL----iPyl~ea~r~yerGdAskeDIDtaMkl 234 (298)
T KOG2304|consen 168 IRTD-----DTSDETFNALVDFGKAVGKTTVACKD-TPGFIVN---RLL----IPYLMEAIRMYERGDASKEDIDTAMKL 234 (298)
T ss_pred hcCC-----CCCHHHHHHHHHHHHHhCCCceeecC-CCchhhh---HHH----HHHHHHHHHHHHhcCCcHhhHHHHHhc
Confidence 1111 22578889999999999999887765 2233332 222 356689999999999999999999988
Q ss_pred cCCC
Q 022237 210 SSAR 213 (300)
Q Consensus 210 ~~~~ 213 (300)
+.+.
T Consensus 235 Gagy 238 (298)
T KOG2304|consen 235 GAGY 238 (298)
T ss_pred cCCC
Confidence 8754
No 100
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.66 E-value=3.6e-06 Score=71.00 Aligned_cols=187 Identities=19% Similarity=0.237 Sum_probs=120.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh-----hHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~-----~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|..||..|+++||+|.+.+.|.+ ..+++...|+..+++..++++.+++.++-+|-....-.+..+ +++. .
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iare---i~~h--v 107 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIARE---ILEH--V 107 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHHHH---HHhh--C
Confidence 77899999999999999987654 456677779999999999999999999999998665556544 3333 4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHH-HHhhhhhhhccCCCCCceEEE-eccCCChHhhhcCceEEEec--------cCHHHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISA-AVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVG--------GSEDAYQ 146 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~~~g~~~~~~~--------g~~~~~~ 146 (300)
+.|.+|.+++|++|...-.-.+ .++.. +. ..|+..+. +.+.|.|.. +- .+..| ..++..+
T Consensus 108 pEgAVicnTCT~sp~vLy~~LE~~Lr~k----R~--dVGvssmHPAgvPGtp~h---~~-yviagr~t~g~elATeEQi~ 177 (340)
T COG4007 108 PEGAVICNTCTVSPVVLYYSLEGELRTK----RE--DVGVSSMHPAGVPGTPQH---GH-YVIAGRSTEGKELATEEQIE 177 (340)
T ss_pred cCCcEecccccCchhHHHHHhhhhhcCc----hh--hcCccccCCCCCCCCCCC---ce-EEEeccCCCceeeccHHHHH
Confidence 6778999999999875433222 22210 00 01122111 124444332 22 22221 1467779
Q ss_pred HHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHH
Q 022237 147 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLT 204 (300)
Q Consensus 147 ~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~ 204 (300)
++.++.++.|+.++.+.. .--+++.=....+.+..+.++.+-+..+.+ .|.+.+.+-
T Consensus 178 r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIe 235 (340)
T COG4007 178 RCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIE 235 (340)
T ss_pred HHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 999999999998877653 333333333445555666777777666653 566655443
No 101
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.58 E-value=1.1e-06 Score=78.54 Aligned_cols=255 Identities=15% Similarity=0.070 Sum_probs=137.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCC-----------CCHHHHhhcCCEEEEecCChhhhhhhhcCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK-----------ETPFEVAEASDVVITMLPSSSHVLDVYNGPN 68 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~-----------~~~~e~~~~adiVii~vp~~~~~~~v~~~~~ 68 (300)
||+-+|..|+++|++|++++|++++++.+.+. |.... ....+.....|+||+||... ++.+++..+.
T Consensus 13 iG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-~~~~al~~l~ 91 (305)
T PRK05708 13 LGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-DAEPAVASLA 91 (305)
T ss_pred HHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-hHHHHHHHHH
Confidence 68999999999999999999998888888754 32110 01112235689999999665 6777776554
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh-cCceEEEecc-CHHHHH
Q 022237 69 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE-AGTLTFMVGG-SEDAYQ 146 (300)
Q Consensus 69 ~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~-~g~~~~~~~g-~~~~~~ 146 (300)
..+. +...++.-..++... +.+.+.+.... -+.+..++.+...+ |.... .+...+.+|. +.+..+
T Consensus 92 ~~l~----~~t~vv~lQNGv~~~--e~l~~~~~~~~------v~~g~~~~ga~~~~-pg~v~~~~~g~~~~G~~~~~~~~ 158 (305)
T PRK05708 92 HRLA----PGAELLLLQNGLGSQ--DAVAARVPHAR------CIFASSTEGAFRDG-DWRVVFAGHGFTWLGDPRNPTAP 158 (305)
T ss_pred hhCC----CCCEEEEEeCCCCCH--HHHHHhCCCCc------EEEEEeeeceecCC-CCEEEEeceEEEEEcCCCCcchH
Confidence 4442 222333444444432 23333332210 00011222211111 11001 1111223442 233456
Q ss_pred HHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCC--HHHHHHH
Q 022237 147 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA------------------VSMLGVSEALTLGQSLGIS--ASTLTKI 206 (300)
Q Consensus 147 ~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~------------------~~~~~~~Ea~~l~~~~Gi~--~~~~~~~ 206 (300)
++.++|..-|..+....++....-.|++.|.... .....+.|+..++++.|++ .+.+.+.
T Consensus 159 ~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~~ 238 (305)
T PRK05708 159 AWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHEE 238 (305)
T ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Confidence 6777777767655555557777777777665321 2456789999999999975 2323333
Q ss_pred HHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-cCC
Q 022237 207 LNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE-NGH 281 (300)
Q Consensus 207 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~-~g~ 281 (300)
+..-.... ..+ .+.|.++....|..+- ..=...+.++++++|+++|..+.+++++..... .|.
T Consensus 239 ~~~~~~~~--~~~---~sSM~qD~~~gR~tEi-------d~i~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~~~~ 302 (305)
T PRK05708 239 VQRVIQAT--AAN---YSSMYQDVRAGRRTEI-------SYLLGYACRAADRHGLPLPRLQHLQQRLVAHLRARGL 302 (305)
T ss_pred HHHHHHhc--cCC---CcHHHHHHHcCCceee-------hhhhhHHHHHHHHcCCCCchHHHHHHHHHHHHHhcCC
Confidence 32110000 000 1112221111111110 011478899999999999999999987766554 444
No 102
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.55 E-value=1.4e-07 Score=75.57 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=67.7
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CC----CCCCCHHHHhhcCCEEEEecCChhh-hhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GV----PTKETPFEVAEASDVVITMLPSSSH-VLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~-g~----~~~~~~~e~~~~adiVii~vp~~~~-~~~v~~~~~~~l~~ 73 (300)
||.++++.|.+.| ++|++|||++++.+++.+. +. ....+..+.++++|+||+|+|.+.. ++.+..... .
T Consensus 30 ~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~----~ 105 (155)
T cd01065 30 AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDELPLPPS----L 105 (155)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCCCCCHH----H
Confidence 6899999999986 7899999999988876554 32 2345677778999999999999854 333322111 1
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 74 GNSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 74 ~~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.+++++++|+++.++.+ .+.+.+++
T Consensus 106 --~~~~~~v~D~~~~~~~~--~l~~~~~~ 130 (155)
T cd01065 106 --LKPGGVVYDVVYNPLET--PLLKEARA 130 (155)
T ss_pred --cCCCCEEEEcCcCCCCC--HHHHHHHH
Confidence 24568999999986654 66666654
No 103
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.53 E-value=6.3e-06 Score=73.50 Aligned_cols=252 Identities=14% Similarity=0.180 Sum_probs=146.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC------------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP------------TKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 68 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~------------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~ 68 (300)
||+-++..|+++|++|+++.|++. ++++.+.|.. ......+....+|+||++|... ++++++..+.
T Consensus 11 vG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q~~~al~~l~ 88 (307)
T COG1893 11 IGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-QLEEALPSLA 88 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-cHHHHHHHhh
Confidence 799999999999999999999987 8888876532 1122235556899999999665 8888887665
Q ss_pred CcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCC--ChHhhhcCceEE--EeccCHH
Q 022237 69 GLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GVLAAEAGTLTF--MVGGSED 143 (300)
Q Consensus 69 ~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g--~~~~~~~g~~~~--~~~g~~~ 143 (300)
+.+. +.+.|+ -..+..-.+ .+.+..... ..+.|+.+..+--.+ .......|...+ +.+++++
T Consensus 89 ~~~~-----~~t~vl~lqNG~g~~e--~l~~~~~~~------~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~ 155 (307)
T COG1893 89 PLLG-----PNTVVLFLQNGLGHEE--ELRKILPKE------TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDE 155 (307)
T ss_pred hcCC-----CCcEEEEEeCCCcHHH--HHHHhCCcc------eEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchH
Confidence 5553 223333 333444332 555544321 000111111111111 111111122211 2233457
Q ss_pred HHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcC--CCH
Q 022237 144 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTLGQSLG--ISA 200 (300)
Q Consensus 144 ~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~---------------------~~~~~~~Ea~~l~~~~G--i~~ 200 (300)
..+.+.++|+.-+..+.+..++-...-.|++.|.-+. .....+.|+...+++.| ++.
T Consensus 156 ~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~ 235 (307)
T COG1893 156 LVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPE 235 (307)
T ss_pred HHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 7888888898888777666667777777766665433 25677889999999999 566
Q ss_pred HHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 022237 201 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 201 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
+.+.++.......+ .. ..+.|.+ |...+-. -+.-.=...+++.++++|+++|..+.++++++.....
T Consensus 236 ~~~~~v~~~~~~~~--~~---~~sSM~q------Dl~~gr~-tEid~i~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 236 EVVERVLAVIRATD--AE---NYSSMLQ------DLEKGRP-TEIDAINGAVVRLAKKHGLATPVNDTLYALLKAKEAE 302 (307)
T ss_pred HHHHHHHHHHHhcc--cc---cCchHHH------HHHcCCc-ccHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 43333333221100 01 1111222 1111100 0111114778999999999999999999998877654
No 104
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.45 E-value=9.5e-06 Score=71.79 Aligned_cols=180 Identities=16% Similarity=0.127 Sum_probs=102.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|++|...|++|++|+|.....+.....|... .+++|+++.||+|++++|++. .+.++.+ ++++. .++|+
T Consensus 27 IG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~-t~~V~~~--eil~~--MK~Ga 100 (335)
T PRK13403 27 QGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQ-QAHVYKA--EVEEN--LREGQ 100 (335)
T ss_pred HHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChH-HHHHHHH--HHHhc--CCCCC
Confidence 799999999999999999988755555555567754 489999999999999999974 4777752 34443 34556
Q ss_pred EEEEcCC--CCHHHHHHHHHHHhhhhhhhccCCCCCce-EEEec-cCCChHhh----hcCceEEEe-c--cCHHHHHHHH
Q 022237 81 LLIDSST--IDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAP-VSGGVLAA----EAGTLTFMV-G--GSEDAYQAAK 149 (300)
Q Consensus 81 ivid~st--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p-v~g~~~~~----~~g~~~~~~-~--g~~~~~~~~~ 149 (300)
+++-+-+ +... ..... .++. ++-+| -.|..... ..|...+++ - .+..+.+.+.
T Consensus 101 iL~f~hgfni~~~------~i~pp----------~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~al 164 (335)
T PRK13403 101 MLLFSHGFNIHFG------QINPP----------SYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVAL 164 (335)
T ss_pred EEEECCCcceecC------ceeCC----------CCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHH
Confidence 6653222 1111 11100 0122 22233 23332221 123333322 1 2345778899
Q ss_pred HHHHhcCCC---eEeeCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022237 150 PLFLSMGKN---TIYCGGAGNGAAAKIC--NNLTMAVSMLGVSEALTLGQSLGISASTL 203 (300)
Q Consensus 150 ~ll~~lg~~---~~~~g~~g~a~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~ 203 (300)
.+...+|.. ++.+ ....-.-..+. +..+..+...++.-++....++|.+|+.+
T Consensus 165 a~a~~iG~~ragv~~t-tf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~A 222 (335)
T PRK13403 165 AYAKGVGCTRAGVIET-TFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIA 222 (335)
T ss_pred HHHHHcCCCceeEEec-chHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 999999875 2211 11111111121 12333444455555566677778887764
No 105
>PRK07574 formate dehydrogenase; Provisional
Probab=98.43 E-value=1e-06 Score=80.69 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=80.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|++|...|.+|.+|||++...+.....|+....+++++++.||+|++++|...+.+.++.+ +.++. .++|.
T Consensus 203 IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--~~l~~--mk~ga 278 (385)
T PRK07574 203 IGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDA--DVLSR--MKRGS 278 (385)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCH--HHHhc--CCCCc
Confidence 689999999999999999999874444344456665678999999999999999999898888853 35554 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++.........+.+.+.+
T Consensus 279 ~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 279 YLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred EEEECCCCchhhHHHHHHHHHh
Confidence 9999999998888888888875
No 106
>PLN03139 formate dehydrogenase; Provisional
Probab=98.40 E-value=1.4e-06 Score=79.67 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=81.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..+|+.|...|.+|.+||+++...+...+.|+....++++++++||+|++++|...+.+.++.. +.++. .++|.
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~--~~l~~--mk~ga 285 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK--ERIAK--MKKGV 285 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH--HHHhh--CCCCe
Confidence 689999999999999999999865444445557666679999999999999999999899888853 35554 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++.........+.+.+.+
T Consensus 286 ~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 286 LIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred EEEECCCCchhhHHHHHHHHHc
Confidence 9999999988888888888875
No 107
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.39 E-value=2.1e-05 Score=65.39 Aligned_cols=118 Identities=11% Similarity=0.125 Sum_probs=80.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.++..|.++||.|+ +.+||+||+|+|.. .+.+++.+. . +
T Consensus 12 mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~~~i~~~---~--------~ 53 (197)
T PRK06444 12 LGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AALNYIESY---D--------N 53 (197)
T ss_pred HHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHHHHHHHh---C--------C
Confidence 89999999999999986 36999999999998 666676532 1 3
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcC--ceEEEec--cCHHHHHHHHHHHHhc
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAG--TLTFMVG--GSEDAYQAAKPLFLSM 155 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g--~~~~~~~--g~~~~~~~~~~ll~~l 155 (300)
+++|.++++....+. . ..|+ .+|++|... +..+ ...+++. .+++..+.++++++
T Consensus 54 ~v~Dv~SvK~~i~~~-------------~-----~~~vg~HPMfGp~~-a~~~lf~~~iv~~~~~~~~~~~~~~~l~~-- 112 (197)
T PRK06444 54 NFVEISSVKWPFKKY-------------S-----GKIVSIHPLFGPMS-YNDGVHRTVIFINDISRDNYLNEINEMFR-- 112 (197)
T ss_pred eEEeccccCHHHHHh-------------c-----CCEEecCCCCCCCc-CcccccceEEEECCCCCHHHHHHHHHHHc--
Confidence 789999999753211 0 2334 368887332 2221 2233342 25567788999998
Q ss_pred CCCeEeeCCccHHHHHHHHHHH
Q 022237 156 GKNTIYCGGAGNGAAAKICNNL 177 (300)
Q Consensus 156 g~~~~~~g~~g~a~~~k~~~n~ 177 (300)
|.+++.+.+-..-..+-.++.+
T Consensus 113 G~~~~~~t~eeHD~~~A~ishL 134 (197)
T PRK06444 113 GYHFVEMTADEHDLLMSEIMVK 134 (197)
T ss_pred CCEEEEeCHHHHHHHHHHHHHH
Confidence 7888888775666666655544
No 108
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.30 E-value=1.9e-06 Score=75.72 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=53.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||..|.++|+.|++|+++.. ++.+.+++||+||+|++.+..++.+. + ++|.
T Consensus 171 vG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~------i-----k~Ga 225 (301)
T PRK14194 171 VGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW------L-----KPGA 225 (301)
T ss_pred cHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh------c-----cCCc
Confidence 899999999999999999987632 78899999999999999997666554 2 3568
Q ss_pred EEEEcCCC
Q 022237 81 LLIDSSTI 88 (300)
Q Consensus 81 ivid~st~ 88 (300)
+|||+|..
T Consensus 226 iVIDvgin 233 (301)
T PRK14194 226 VVIDVGIN 233 (301)
T ss_pred EEEEeccc
Confidence 99999864
No 109
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.29 E-value=2.5e-06 Score=77.04 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=76.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.|...|++|++|||++.... ....+.. ..++.+++++||+|++++|...+.+.++.. +.++. .+++.
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~--~~~~~--mk~ga 234 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMINE--ERLKL--MKPTA 234 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCH--HHHhc--CCCCe
Confidence 699999999999999999999876432 2233443 358999999999999999998888888753 34544 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|.........+.+.+.+
T Consensus 235 ~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 235 ILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred EEEECcCchhcCHHHHHHHHHc
Confidence 9999999998888888888865
No 110
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.26 E-value=2.7e-06 Score=75.65 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=74.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+.+|+.+...|++|++|||+... .+.. ...++++++++||+|++++|...+.+.++. .+.++. .+++
T Consensus 133 IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~~l~~--mk~g 202 (303)
T PRK06436 133 IGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMIN--SKMLSL--FRKG 202 (303)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcC--HHHHhc--CCCC
Confidence 6899999888889999999998532 2332 246899999999999999999988888875 334544 4667
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++||+|...+.....+.+.+.+
T Consensus 203 a~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 203 LAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred eEEEECCCccccCHHHHHHHHHc
Confidence 99999999999888888888865
No 111
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.26 E-value=3.9e-06 Score=69.66 Aligned_cols=185 Identities=14% Similarity=0.153 Sum_probs=120.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC--------------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG--------------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g--------------~~~~~~~~e~~~~adiVii~vp 55 (300)
.|+++|.-|+..||+|..||+.++.+... .+.| +..++++.|+++++=.|--|+|
T Consensus 14 ~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcvp 93 (313)
T KOG2305|consen 14 VGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECVP 93 (313)
T ss_pred ccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhch
Confidence 47899999999999999999998865432 2222 3467789999999999999999
Q ss_pred Chhhhhhh-hcCCCCcccCCCCCCCeEEEEcCCC--CHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcC
Q 022237 56 SSSHVLDV-YNGPNGLLQGGNSVRPQLLIDSSTI--DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 132 (300)
Q Consensus 56 ~~~~~~~v-~~~~~~~l~~~~~~~~~ivid~st~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g 132 (300)
.+-.++.- +.+++++++. ++|+-.||. .|+. -.+....... +.. .|.+.+|.+-+...
T Consensus 94 E~L~lkk~ly~qlD~i~d~------~tIlaSSTSt~mpS~--~s~gL~~k~q--~lv-----aHPvNPPyfiPLvE---- 154 (313)
T KOG2305|consen 94 EDLNLKKQLYKQLDEIADP------TTILASSTSTFMPSK--FSAGLINKEQ--CLV-----AHPVNPPYFIPLVE---- 154 (313)
T ss_pred HhhHHHHHHHHHHHHhcCC------ceEEeccccccChHH--Hhhhhhhhhh--eeE-----ecCCCCCcccchhe----
Confidence 98776543 4444555532 566654543 3432 2222221100 000 23333443332211
Q ss_pred ceEEEec---cCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 022237 133 TLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 209 (300)
Q Consensus 133 ~~~~~~~---g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 209 (300)
++. ..++..++.+.+.+.+|.+++.....-.+.++..+.. +..+|-.++....++...++..+++.
T Consensus 155 ----lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~-------Ailne~wrLvasGil~v~dvD~VmS~ 223 (313)
T KOG2305|consen 155 ----LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQY-------AILNETWRLVASGILNVNDVDAVMSA 223 (313)
T ss_pred ----eccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccccH-------HHHHHHHHHHHccCcchhhHHHHHhc
Confidence 122 2567889999999999988877765455556655554 44599999999989999999888888
Q ss_pred cCCCcc
Q 022237 210 SSARCW 215 (300)
Q Consensus 210 ~~~~s~ 215 (300)
+.|-.+
T Consensus 224 GLG~RY 229 (313)
T KOG2305|consen 224 GLGPRY 229 (313)
T ss_pred CCCcch
Confidence 765443
No 112
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=3.7e-06 Score=74.02 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=51.7
Q ss_pred ChHHHHHHHHhCCCeEEEEc-CChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~d-r~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||.+||..|.++|+.|++|+ |++ ++++++++||+||+|++.+..++.++ + ++|
T Consensus 170 mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~------l-----k~G 223 (296)
T PRK14188 170 VGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW------I-----KPG 223 (296)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe------e-----cCC
Confidence 89999999999999999995 764 46888999999999999997665543 2 356
Q ss_pred eEEEEcCCCC
Q 022237 80 QLLIDSSTID 89 (300)
Q Consensus 80 ~ivid~st~~ 89 (300)
++|||+++..
T Consensus 224 avVIDvGin~ 233 (296)
T PRK14188 224 ATVIDVGINR 233 (296)
T ss_pred CEEEEcCCcc
Confidence 8999988643
No 113
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.21 E-value=5.3e-06 Score=74.76 Aligned_cols=94 Identities=15% Similarity=0.240 Sum_probs=72.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|...|++|++||++++..... .....++.+++++||+|++++|...+.+.++. +..++. .+++.
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~l~~--mk~ga 228 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFD--KAMFDH--VKKGA 228 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHHHhc--CCCCc
Confidence 69999999999999999999998754332 23446899999999999999999877777764 234443 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-..-.....+.+.+.+
T Consensus 229 vlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 229 ILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred EEEEcCCccccCHHHHHHHHHc
Confidence 9999987776666677777764
No 114
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.20 E-value=2.5e-05 Score=68.64 Aligned_cols=145 Identities=15% Similarity=0.148 Sum_probs=103.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-HhCCCCCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||.=+|..|.++||.|+++||+. ...+ ...|....+.+.+.+ +..|+|++|+.-- .++.++.... ....+.
T Consensus 63 mGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilatyp----fqrlrr 135 (480)
T KOG2380|consen 63 MGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATYP----FQRLRR 135 (480)
T ss_pred HHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhcC----chhhcc
Confidence 79999999999999999999986 4344 334766777777766 5899999999554 7777775432 111456
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcCc-eEEEe----cc----CHHHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGT-LTFMV----GG----SEDAYQAA 148 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g~-~~~~~----~g----~~~~~~~~ 148 (300)
|++++|..+++.-....+.+.+++ .+..+ .+|++|+....-..+ +.++. .| .++-+|.+
T Consensus 136 gtlfvdvlSvKefek~lfekYLPk-----------dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~f 204 (480)
T KOG2380|consen 136 GTLFVDVLSVKEFEKELFEKYLPK-----------DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFF 204 (480)
T ss_pred ceeEeeeeecchhHHHHHHHhCcc-----------ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHH
Confidence 799999999988878788887764 24444 468888762221122 23222 23 37888999
Q ss_pred HHHHHhcCCCeEeeC
Q 022237 149 KPLFLSMGKNTIYCG 163 (300)
Q Consensus 149 ~~ll~~lg~~~~~~g 163 (300)
.++|.+.|++.+++.
T Consensus 205 leIf~cegckmVemS 219 (480)
T KOG2380|consen 205 LEIFACEGCKMVEMS 219 (480)
T ss_pred HHHHHhcCCeEEEEE
Confidence 999999999998885
No 115
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.16 E-value=6.3e-06 Score=74.44 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=72.2
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+++|+.|+ ..|.+|++||+++.... ..++....+++++++++|+|++++|.....+.++.. +.++. .+++
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~--~~l~~--mk~g 229 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA--DLFKH--FKKG 229 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH--HHHhc--CCCC
Confidence 6899999994 46889999999876431 123445568999999999999999998666655432 23433 3567
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++||+|.........+.+.+.+
T Consensus 230 ailIN~sRG~~vd~~aL~~aL~~ 252 (332)
T PRK08605 230 AVFVNCARGSLVDTKALLDALDN 252 (332)
T ss_pred cEEEECCCCcccCHHHHHHHHHh
Confidence 89999999999888888888865
No 116
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.13 E-value=0.00017 Score=61.25 Aligned_cols=243 Identities=14% Similarity=0.174 Sum_probs=150.2
Q ss_pred ChHHHHHHHHhCCC----eEEEEcCChhhHHH-HHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKM-FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~----~V~~~dr~~~~~~~-~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
|..++++++...|. +++.+-.+...... +...|...+.+..+.++.+|++++++ .+..+..++.+....+
T Consensus 11 ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vls~~~~~~---- 85 (267)
T KOG3124|consen 11 MAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVLSEIKPKV---- 85 (267)
T ss_pred hHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHhhcCcccc----
Confidence 45677777777775 46666554333333 67778877777789999999999999 5558899988765433
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFL 153 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~ 153 (300)
..+++++ |-....+...+.+.+.. ..+++-. +...|.....|...+..+. ..+..+.+++++.
T Consensus 86 -~~~~iiv--S~aaG~tl~~l~~~l~~-----------~~rviRv-mpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~ 150 (267)
T KOG3124|consen 86 -SKGKIIV--SVAAGKTLSSLESKLSP-----------PTRVIRV-MPNTPSVVGEGASVYAIGCHATNEDLELVEELLS 150 (267)
T ss_pred -ccceEEE--EEeecccHHHHHHhcCC-----------CCceEEe-cCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHH
Confidence 2346777 33333444444444431 1233331 3444555556663333333 3456689999999
Q ss_pred hcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCC
Q 022237 154 SMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 230 (300)
Q Consensus 154 ~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~ 230 (300)
..|... .+.+ ++....+.-...+|.+..+.++.+. +.+.|++++..+++-.+.. |..-+......=|+.++
T Consensus 151 ~vG~~~-evpE~~iDavTgLsGSgPAy~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lk-- 224 (267)
T KOG3124|consen 151 AVGLCE-EVPEKCIDAVTGLSGSGPAYVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLK-- 224 (267)
T ss_pred hcCcce-eCcHHhhhHHhhccCCcHHHHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHh--
Confidence 999744 4443 7777888888899998888888888 8899999999988776653 21111111111122222
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 231 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 231 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
..-..|+-+ .-+.....++-|++.-++.++.+-=.++.+
T Consensus 225 --d~V~SPgG~-------TI~glh~LE~ggfRs~linaVeaa~~r~~e 263 (267)
T KOG3124|consen 225 --DDVCSPGGT-------TIYGLHALEKGGFRSGLINAVEAATKRARE 263 (267)
T ss_pred --CCCCCCCcc-------hHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 222345333 234455667778887777777665555544
No 117
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.12 E-value=7.7e-06 Score=67.17 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=73.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|++|||++.........+. ...+++|++++||+|++++|...+.+.++.. ..++. .+++.
T Consensus 47 IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~--~~l~~--mk~ga 121 (178)
T PF02826_consen 47 IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLINA--EFLAK--MKPGA 121 (178)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSH--HHHHT--STTTE
T ss_pred CcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceeeee--eeeec--cccce
Confidence 5899999999999999999999987765666665 4459999999999999999977677766653 34443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++-...-.-..+.+.+.+
T Consensus 122 ~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 122 VLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp EEEESSSGGGB-HHHHHHHHHT
T ss_pred EEEeccchhhhhhhHHHHHHhh
Confidence 9999887776666677777765
No 118
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.00 E-value=1.2e-05 Score=71.87 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=72.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..+|+.|...|++|++||+++++...+.. .....++++++++||+|++++|...+.+.++.+ +.+.. .++|.
T Consensus 147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~--~~l~~--mk~ga 220 (312)
T PRK15469 147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIINQ--QLLEQ--LPDGA 220 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhHH--HHHhc--CCCCc
Confidence 6899999999999999999998765322211 112357899999999999999999888888753 34544 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++-...-.-..+.+.+.+
T Consensus 221 ~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 221 YLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred EEEECCCccccCHHHHHHHHhc
Confidence 9999987766666677777764
No 119
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.99 E-value=1.8e-05 Score=75.88 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=76.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.|...|.+|++||++... +...+.|+....++++++++||+|++++|...+.+.++.. +.++. .+++.
T Consensus 149 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--~~l~~--mk~ga 223 (525)
T TIGR01327 149 IGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGA--EELAK--MKKGV 223 (525)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH--HHHhc--CCCCe
Confidence 6899999999999999999986322 2233446655568999999999999999998888888742 34544 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++.........+.+.+.+
T Consensus 224 ~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 224 IIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred EEEEcCCCceeCHHHHHHHHHc
Confidence 9999999888888888888765
No 120
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.94 E-value=2.3e-05 Score=75.18 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=76.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.|...|++|++||++... +.....|+... ++++++++||+|++++|...+.+.++.. +.++. .+++.
T Consensus 151 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~--~~l~~--mk~ga 224 (526)
T PRK13581 151 IGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGA--EELAK--MKPGV 224 (526)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCH--HHHhc--CCCCe
Confidence 6899999999999999999996432 23334466554 8999999999999999999888888752 34544 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++.........+.+.+.+
T Consensus 225 ~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 225 RIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred EEEECCCCceeCHHHHHHHHhc
Confidence 9999999888888888888765
No 121
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.91 E-value=3.5e-05 Score=68.07 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=63.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||.++|+.|...|.+|+++||++++...+.+.|.... .++.+.++++|+||.++|....-++.+ +. .++
T Consensus 162 iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l-------~~--~k~ 232 (287)
T TIGR02853 162 TGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVL-------SK--LPK 232 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHH-------hc--CCC
Confidence 6899999999999999999999998877776665433 356778899999999998762222222 22 245
Q ss_pred CeEEEEcCCCCHHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRN 95 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~ 95 (300)
+.++||+++....+-.+
T Consensus 233 ~aliIDlas~Pg~tdf~ 249 (287)
T TIGR02853 233 HAVIIDLASKPGGTDFE 249 (287)
T ss_pred CeEEEEeCcCCCCCCHH
Confidence 58999999876554333
No 122
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00051 Score=57.39 Aligned_cols=177 Identities=12% Similarity=0.048 Sum_probs=111.5
Q ss_pred HHHH-HHhCCCeEE----EEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 5 MASN-LMKAGYKMA----VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 5 la~~-l~~~G~~V~----~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
+++. |.++-|.++ +-.|++++++.+.+.-.....+.+...+-.+++|.-+|+. .+..+... .+ ..++
T Consensus 21 l~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~vaa~---~~----~rpg 92 (289)
T COG5495 21 LGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVAAT---SL----NRPG 92 (289)
T ss_pred HHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHHHh---cc----cCCC
Confidence 4444 445555443 3378888888876653333334445556778999999887 44444321 22 4567
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEec--cC-CChHhhh--cCceEEEeccCHHHHHHHHHHHHh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP--VS-GGVLAAE--AGTLTFMVGGSEDAYQAAKPLFLS 154 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--v~-g~~~~~~--~g~~~~~~~g~~~~~~~~~~ll~~ 154 (300)
+++++||+........- +.+. |- +-..-+| .| |.+.... +++......+|+.-...++.+...
T Consensus 93 ~iv~HcSga~~~~il~~---~gr~------g~---~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~e 160 (289)
T COG5495 93 TIVAHCSGANGSGILAP---LGRQ------GC---IPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALE 160 (289)
T ss_pred eEEEEccCCCchhhhhh---hhhc------CC---cceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHH
Confidence 99999999776544332 2221 10 0011122 23 3333333 455444457788888899999999
Q ss_pred cCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022237 155 MGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 202 (300)
Q Consensus 155 lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~ 202 (300)
+|.++|.+-+ +.-.......|......+..+.++..+.+.+|.|.-+
T Consensus 161 mgg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e 207 (289)
T COG5495 161 MGGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPE 207 (289)
T ss_pred hCCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcc
Confidence 9999998876 6655666666666666668999999999999988543
No 123
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=5.7e-05 Score=66.07 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=51.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||..|.++|+.|++|+.. +.++++.+++||+||.+++.+..++..+ .++|.
T Consensus 170 vG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~-----------ik~Ga 224 (284)
T PRK14179 170 VGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF-----------VKEGA 224 (284)
T ss_pred CcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH-----------ccCCc
Confidence 8999999999999999999321 1368889999999999999997665543 24568
Q ss_pred EEEEcCCCC
Q 022237 81 LLIDSSTID 89 (300)
Q Consensus 81 ivid~st~~ 89 (300)
+|||++...
T Consensus 225 vVIDvgin~ 233 (284)
T PRK14179 225 VVIDVGMNR 233 (284)
T ss_pred EEEEeccee
Confidence 999988643
No 124
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.76 E-value=3.1e-05 Score=69.47 Aligned_cols=90 Identities=9% Similarity=-0.024 Sum_probs=64.0
Q ss_pred ChHHHHHHHHh--CCCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~--~G~~V~~~dr~~~~~~~~~~~----g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||..+++.+.. ...+|++|||++++++.+.+. | +..+.+++++++++|+|+.|+|.+ +.++.. +.
T Consensus 136 ~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~pvl~~--~~-- 208 (314)
T PRK06141 136 LASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EPLVRG--EW-- 208 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CCEecH--HH--
Confidence 57778775554 346899999999998887664 4 445678899999999998888765 344432 12
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
.++|+ +|++++..+...+++...+.
T Consensus 209 ---l~~g~-~i~~ig~~~~~~~El~~~~~ 233 (314)
T PRK06141 209 ---LKPGT-HLDLVGNFTPDMRECDDEAI 233 (314)
T ss_pred ---cCCCC-EEEeeCCCCcccccCCHHHH
Confidence 23444 78888888777777765543
No 125
>PLN02928 oxidoreductase family protein
Probab=97.71 E-value=0.00012 Score=66.60 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=71.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH------------HhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF------------SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 68 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~------------~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~ 68 (300)
||..+|+.|...|.+|++|||+..+.... ...+. ...++++++++||+|++++|...+.+.++..
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~-- 246 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVND-- 246 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcccCH--
Confidence 68999999999999999999984322111 11112 3468999999999999999988788777753
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 69 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 69 ~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..++. .++|.++||++-...-....+.+.+.+
T Consensus 247 ~~l~~--Mk~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 247 EFLSS--MKKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred HHHhc--CCCCeEEEECCCccccCHHHHHHHHHc
Confidence 34544 467799999987666666667776654
No 126
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.64 E-value=8.7e-05 Score=59.01 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=52.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc-CCCCcccCCCCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN-GPNGLLQGGNSVRP 79 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~-~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~-~~~~~l~~~~~~~~ 79 (300)
|.+.|.+|..+|++|++..|..+ ..++..+.|... .+..|+++.+|+|++.+||. ...+++. ++.+.+ ++|
T Consensus 16 G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~-~q~~vy~~~I~p~l-----~~G 88 (165)
T PF07991_consen 16 GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDE-VQPEVYEEEIAPNL-----KPG 88 (165)
T ss_dssp HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HH-HHHHHHHHHHHHHS------TT
T ss_pred HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChH-HHHHHHHHHHHhhC-----CCC
Confidence 78899999999999999988866 777888888776 48899999999999999997 5566763 223333 455
Q ss_pred eEEEE
Q 022237 80 QLLID 84 (300)
Q Consensus 80 ~ivid 84 (300)
++++=
T Consensus 89 ~~L~f 93 (165)
T PF07991_consen 89 ATLVF 93 (165)
T ss_dssp -EEEE
T ss_pred CEEEe
Confidence 66664
No 127
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.63 E-value=0.00014 Score=66.55 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=69.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChh----hhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS----HVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~----~~~~v~~~~~~~l~~~~~ 76 (300)
||+.+|+.+...|++|++||+..... .+.....++++++++||+|++++|... ....++.+ ..+.. .
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~--~~l~~--m 197 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDE--AFLAS--L 197 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCH--HHHhc--C
Confidence 68999999999999999999864321 122334689999999999999999764 24444432 24443 4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|.++||+|.........+.+.+.+
T Consensus 198 k~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 198 RPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred CCCeEEEECCCCcccCHHHHHHHHHh
Confidence 67799999999888888888887764
No 128
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.57 E-value=0.00026 Score=62.12 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=65.8
Q ss_pred ChHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-CC-CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~-~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||..+++.|.+. ++++. +|||++++.+++.+. |. ..+.++++.++++|+|++|+|++ ...++... .++
T Consensus 17 IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~-~h~e~~~~---aL~--- 89 (271)
T PRK13302 17 IGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS-VLRAIVEP---VLA--- 89 (271)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH-HHHHHHHH---HHH---
Confidence 688889999863 67765 789999998877654 43 45678999999999999999987 55555432 332
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.|+.++..|.......+++.+.+++
T Consensus 90 --aGk~Vi~~s~gal~~~~~L~~~A~~ 114 (271)
T PRK13302 90 --AGKKAIVLSVGALLRNEDLIDLARQ 114 (271)
T ss_pred --cCCcEEEecchhHHhHHHHHHHHHH
Confidence 2234444565555566777776665
No 129
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00023 Score=63.85 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=74.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|++||+...+- .....+.....++++.+++||+|.+.+|...+.+.++... .+.. .++|.
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~--~~a~--MK~ga 227 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAE--ELAK--MKPGA 227 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHH--HHhh--CCCCe
Confidence 58999999999999999999933322 1222355666889999999999999999998888887642 3433 46778
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++-.....-..+.+.+.+
T Consensus 228 ilIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 228 ILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred EEEECCCcceecHHHHHHHHHc
Confidence 9999998777777777777765
No 130
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.52 E-value=0.00039 Score=61.78 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=62.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
+|..++..|.+.|.+|+++||++++.......|.... .++.+.+.++|+||.++|.....++.+ +. .++
T Consensus 163 iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l-------~~--~~~ 233 (296)
T PRK08306 163 TGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVL-------SK--MPP 233 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHH-------Hc--CCC
Confidence 5889999999999999999999988877777776543 356788899999999998752222222 22 234
Q ss_pred CeEEEEcCCCCHHH
Q 022237 79 PQLLIDSSTIDPQT 92 (300)
Q Consensus 79 ~~ivid~st~~p~~ 92 (300)
+.+|||.++....+
T Consensus 234 g~vIIDla~~pggt 247 (296)
T PRK08306 234 EALIIDLASKPGGT 247 (296)
T ss_pred CcEEEEEccCCCCc
Confidence 57999988866553
No 131
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.52 E-value=0.00021 Score=62.66 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=61.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCCCCCCHHH-HhhcCCEEEEecCChh--hhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFE-VAEASDVVITMLPSSS--HVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~~~~~~~e-~~~~adiVii~vp~~~--~~~~v~~~~~~~l~~ 73 (300)
||.+++..|++.|++|+++||++++++++.+. +.....+..+ ...++|+||.|+|... .+.++... ...
T Consensus 128 ~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~-~~~--- 203 (270)
T TIGR00507 128 AARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVP-AEK--- 203 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCC-HHH---
Confidence 58899999999999999999999988777554 2212223333 2358999999999852 22111100 011
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 74 GNSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 74 ~~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..++.+++|+++..+.+ .+.+..++
T Consensus 204 --l~~~~~v~D~~y~p~~T--~ll~~A~~ 228 (270)
T TIGR00507 204 --LKEGMVVYDMVYNPGET--PFLAEAKS 228 (270)
T ss_pred --cCCCCEEEEeccCCCCC--HHHHHHHH
Confidence 23557999999887766 45555554
No 132
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.49 E-value=0.00047 Score=57.66 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=58.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||+.+|+.|.+.|++|+++|+++++++.+.+. |....+ ..+.. .++|+++-|.....-..+.+.+ + +
T Consensus 39 vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~-~~~l~~~~~Dv~vp~A~~~~I~~~~~~~----l------~ 107 (200)
T cd01075 39 VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVA-PEEIYSVDADVFAPCALGGVINDDTIPQ----L------K 107 (200)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEc-chhhccccCCEEEecccccccCHHHHHH----c------C
Confidence 69999999999999999999999998888765 655443 34444 3899999775443222222221 1 2
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++|++..+..-.. .+-.+.+.+
T Consensus 108 ~~~v~~~AN~~~~~-~~~~~~L~~ 130 (200)
T cd01075 108 AKAIAGAANNQLAD-PRHGQMLHE 130 (200)
T ss_pred CCEEEECCcCccCC-HhHHHHHHH
Confidence 26888766643221 344455544
No 133
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.44 E-value=0.00039 Score=64.59 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=73.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|+.+...|.+|++||+++... ..+.....+++|++++||+|.+++|...+.+.++.. ..++. .++|.
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~--~~l~~--mk~ga 233 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGA--EELAL--MKPGA 233 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCH--HHHhc--CCCCe
Confidence 58899999999999999999874321 123444568999999999999999988788777753 24443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-...-....+.+.+.+
T Consensus 234 ~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 234 ILINASRGTVVDIDALADALKS 255 (409)
T ss_pred EEEECCCCcccCHHHHHHHHHc
Confidence 9999998887777788887765
No 134
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.36 E-value=0.00072 Score=60.68 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=73.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|.++|+++..-|.+|..|||++. -+.-...++.... ++|.++++|+|.+.+|...+.+.++.. ..++. .+++.
T Consensus 157 IG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~--~~l~~--mk~ga 230 (324)
T COG1052 157 IGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINA--EELAK--MKPGA 230 (324)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCH--HHHHh--CCCCe
Confidence 589999999977789999999986 2222222344444 999999999999999999888888764 24444 46778
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-..-...+.+.+.+++
T Consensus 231 ~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 231 ILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred EEEECCCccccCHHHHHHHHHh
Confidence 9999988777777777777765
No 135
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.27 E-value=0.001 Score=59.79 Aligned_cols=96 Identities=10% Similarity=0.104 Sum_probs=71.0
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+.+|+.+. .-|.+|..||+....- .....+... .++++++++||+|++++|...+.+.++.. ..++. .+++
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~-~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~--~~l~~--mk~g 229 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKE-AEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFGA--EQFAK--MKSS 229 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchh-hHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH--HHHhc--CCCC
Confidence 5889999987 6788999999874321 122334443 48999999999999999998888877753 24444 4677
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++|+++-...-.-..+.+.+.+
T Consensus 230 a~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 230 AIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred eEEEECCCccccCHHHHHHHHHc
Confidence 99999887776666777777764
No 136
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.24 E-value=0.001 Score=58.25 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=64.8
Q ss_pred ChHHHHHHHHhC--CCe-EEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKA--GYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~--G~~-V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||..+++.|.+. +++ +.+||+++++++.+.+. +.....+.++.+.++|+|++|+|.. ...++... .++.
T Consensus 12 iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~-~~~~~~~~---al~~--- 84 (265)
T PRK13304 12 IASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN-AVEEVVPK---SLEN--- 84 (265)
T ss_pred HHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH-HHHHHHHH---HHHc---
Confidence 688899998876 355 55789999998887654 5566778899889999999999876 66665532 3321
Q ss_pred CCCeEEEEcCC---CCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSST---IDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st---~~p~~~~~~~~~~~~ 102 (300)
|+.++.+|+ ..+...+++.+..++
T Consensus 85 --Gk~Vvv~s~gAl~d~~~~~~L~~aA~~ 111 (265)
T PRK13304 85 --GKDVIIMSVGALADKELFLKLYKLAKE 111 (265)
T ss_pred --CCCEEEEchHHhcCHHHHHHHHHHHHH
Confidence 233444454 356666777766654
No 137
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.20 E-value=0.0021 Score=63.71 Aligned_cols=120 Identities=12% Similarity=0.138 Sum_probs=83.9
Q ss_pred EEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHh
Q 022237 50 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLA 128 (300)
Q Consensus 50 Vii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~ 128 (300)
||+|+|.. .+.+++.++...+ +++++|.|.++++....+.+.+.+.. .. ..|+. +|++|.+..
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~-----~~~~~vtDv~SvK~~i~~~~~~~l~~-----~~-----~~fvg~HPMaG~e~~ 64 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFL-----DASTIVTDAGSTKSDVVAAARAALGA-----RI-----GQFVPGHPIAGRESS 64 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhC-----CCCcEEEecCcccHHHHHHHHHhccc-----cC-----CeEEecCCcCcCcch
Confidence 68999987 7777887654443 35589999999998888877766532 01 23443 566665432
Q ss_pred ----hh----cCceEEEecc---CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHH
Q 022237 129 ----AE----AGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG 185 (300)
Q Consensus 129 ----~~----~g~~~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~ 185 (300)
+. .|...+++.. +++.++.++++++.+|.+++.+.+-..-..+-+++.+-.....++
T Consensus 65 G~~~a~~~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l 132 (673)
T PRK11861 65 GVDAALADLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFAL 132 (673)
T ss_pred hhhhhChhHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHH
Confidence 22 4666777743 577899999999999999999988777777777776655443333
No 138
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.19 E-value=0.001 Score=59.58 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=70.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|++|||+.... ..+.. ..++++++++||+|++++|...+.+.++.+ ..++. .+++.
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~--~~~~~--Mk~~a 226 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAY--KELKL--LKDGA 226 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccCH--HHHHh--CCCCe
Confidence 58899999988899999999974321 12332 358999999999999999988888777764 24443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-...-....+.+.+.+
T Consensus 227 ~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 227 ILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred EEEECCCccccCHHHHHHHHHc
Confidence 9999987776666777777764
No 139
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.18 E-value=0.0012 Score=60.47 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=66.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhh----hhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH----VLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~----~~~v~~~~~~~l~~~~~ 76 (300)
||+.+|+.|...|.+|.+||+..... ... ....++++++++||+|++++|-... ...++.+ ..+.. .
T Consensus 127 IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~--~~l~~--m 197 (378)
T PRK15438 127 VGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE--KLIRS--L 197 (378)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH--HHHhc--C
Confidence 68999999999999999999753211 111 2346899999999999999996532 3334432 23433 4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|.++||+|-...-....+.+.+.+
T Consensus 198 k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 198 KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 66799999988777777777777754
No 140
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.16 E-value=0.0011 Score=53.07 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=55.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhh-hhhcCCCCcccCCCCCCCe
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~-~v~~~~~~~l~~~~~~~~~ 80 (300)
|..+|+.|...|-+|++++++|-++-+....|.... +.++++..+|++|.++.....+. +-+ +. .+.+.
T Consensus 35 G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~e~~-------~~--mkdga 104 (162)
T PF00670_consen 35 GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITGEHF-------RQ--MKDGA 104 (162)
T ss_dssp HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-HHHH-------HH--S-TTE
T ss_pred cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCHHHH-------HH--hcCCe
Confidence 889999999999999999999999888888888764 78999999999999987652221 222 22 35668
Q ss_pred EEEEcCCCCHH
Q 022237 81 LLIDSSTIDPQ 91 (300)
Q Consensus 81 ivid~st~~p~ 91 (300)
++.+.+....+
T Consensus 105 il~n~Gh~d~E 115 (162)
T PF00670_consen 105 ILANAGHFDVE 115 (162)
T ss_dssp EEEESSSSTTS
T ss_pred EEeccCcCcee
Confidence 88887765443
No 141
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.14 E-value=0.022 Score=49.16 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=77.0
Q ss_pred CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCC
Q 022237 33 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 112 (300)
Q Consensus 33 g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
|++.+++..|+++++|++|+-+|.......++.. +++. .++|.+|.+++|++|...-++.+.+++..
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikk---ii~~--lpEgAII~~tCTIpt~~ly~ilE~l~R~D-------- 192 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKK---FIDD--IPEGAIVTHACTIPTTKFAKIFEDLGRED-------- 192 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHH---HHhh--CCCCCEEeccccCChHHHHHHHHhhCccc--------
Confidence 6778888899999999999999988544455543 3333 56789999999999987777766654311
Q ss_pred CCceEEEeccCCChHhhhcCceEEEec-cCHHHHHHHHHHHHhcCCCeEeeCC
Q 022237 113 ENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCGG 164 (300)
Q Consensus 113 ~~~~~~~~pv~g~~~~~~~g~~~~~~~-g~~~~~~~~~~ll~~lg~~~~~~g~ 164 (300)
+...+ -..++.+... ++..+.-+ .+++..+++-++.+..++.++.+..
T Consensus 193 --vgVsS-~HPaaVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA 241 (340)
T TIGR01723 193 --LNVTS-YHPGCVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKMPA 241 (340)
T ss_pred --CCeec-cCCCCCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 11111 1122222222 33233222 2788899999999999998887753
No 142
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.13 E-value=0.001 Score=59.99 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=53.7
Q ss_pred hHHHHHHHHh--CCCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 2 GFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 2 G~~la~~l~~--~G~~V~~~dr~~~~~~~~~~~----g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
|...++.|.. ...+|.+|||++++++.+.+. | ...+.+++++++++|+|++|+|... .++.. ..
T Consensus 140 A~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---P~~~~--~~--- 211 (325)
T TIGR02371 140 AWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---PVVKA--DW--- 211 (325)
T ss_pred HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---cEecH--HH---
Confidence 4444444443 345899999999998877552 5 3457899999999999999998762 33321 12
Q ss_pred CCCCCCeEEEEcCCCCHH
Q 022237 74 GNSVRPQLLIDSSTIDPQ 91 (300)
Q Consensus 74 ~~~~~~~ivid~st~~p~ 91 (300)
.++|..|...++..|.
T Consensus 212 --l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 212 --VSEGTHINAIGADAPG 227 (325)
T ss_pred --cCCCCEEEecCCCCcc
Confidence 2456677766665554
No 143
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=97.05 E-value=0.002 Score=56.44 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---HhcCCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 022237 168 GAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKIL---NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 243 (300)
Q Consensus 168 a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (300)
|+.+||++|.+.++.|++++|++.+.+. .|++.+++.+++ +.+...||+.+..... + .+.+.++.+-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~i---l----~~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADI---L----RKKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHH---H----T-B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHH---H----hhccCccCcchh
Confidence 6889999999999999999999999995 689887765544 4666678876533211 1 111211111111
Q ss_pred h------HHHHHHHHHHHHHHcCCCchHHHHHH-HHHHHH
Q 022237 244 L------MAKDLNLALASAKEVGVDCPLTSQAQ-DIYAKL 276 (300)
Q Consensus 244 ~------~~kd~~~~~~~a~~~g~~~~~~~~~~-~~~~~a 276 (300)
. -...-+...+.+-++|+|.|.+.++. .++.++
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~ 113 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAVFARFLSA 113 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHHHHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHHHHHHHhc
Confidence 1 11123677788999999999998665 444433
No 144
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.05 E-value=0.0025 Score=56.38 Aligned_cols=269 Identities=12% Similarity=0.075 Sum_probs=149.4
Q ss_pred ChHHHHHHHHhC--CC-----eEEEEcCCh------hhHHHHHhC---------------CCCCCCCHHHHhhcCCEEEE
Q 022237 1 MGFRMASNLMKA--GY-----KMAVHDVNC------NVMKMFSDM---------------GVPTKETPFEVAEASDVVIT 52 (300)
Q Consensus 1 mG~~la~~l~~~--G~-----~V~~~dr~~------~~~~~~~~~---------------g~~~~~~~~e~~~~adiVii 52 (300)
+|+++|+-+.++ ++ +|..|-+.. +++.+.... ++.+.+++.+++.++|+++.
T Consensus 32 WGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea~~dADilvf 111 (372)
T KOG2711|consen 32 WGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEAAKDADILVF 111 (372)
T ss_pred HHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHHhccCCEEEE
Confidence 478888877764 22 577774332 233333222 34567889999999999999
Q ss_pred ecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcC-CC---CHH-HHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChH
Q 022237 53 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TI---DPQ-TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 127 (300)
Q Consensus 53 ~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s-t~---~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~ 127 (300)
.+|.+ .+.++++++.+.++. +...|-++ +. .+. ..+-+.+.+.+. .| .+..++.+|.+..+.
T Consensus 112 ~vPhQ-f~~~ic~~l~g~vk~-----~~~aISL~KG~e~~~~g~~i~liS~iI~~~-----lg--I~~~vL~GaNiA~EV 178 (372)
T KOG2711|consen 112 VVPHQ-FIPRICEQLKGYVKP-----GATAISLIKGVEVGEEGPGIRLISQIIHRA-----LG--IPCSVLMGANIASEV 178 (372)
T ss_pred eCChh-hHHHHHHHHhcccCC-----CCeEEEeecceeccCCCCceeehHHHHHHH-----hC--CCceeecCCchHHHH
Confidence 99997 888899887776643 23344333 11 111 234444444431 11 124577777777666
Q ss_pred hhhcCceEEEecc-CHHHHHHHHHHHHhcCCCeEeeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHH
Q 022237 128 AAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEA 189 (300)
Q Consensus 128 ~~~~g~~~~~~~g-~~~~~~~~~~ll~~lg~~~~~~g~~-----------------g~a~~~k~~~n~~~~~~~~~~~Ea 189 (300)
..+.-+-+.+..- +.+.-..+..+|+.--.++..+.+. |-...+.+.+|...+.+-..+.|+
T Consensus 179 a~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~Em 258 (372)
T KOG2711|consen 179 ANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLEM 258 (372)
T ss_pred HhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHHH
Confidence 5544332222222 3333335777777555444333321 445566678888888888999999
Q ss_pred HHHHHHc-CC-CHHHHHHH------HHhcCCCccccccCCCCCCcccCCCCCCC-CC-----C-CcchhhHHHHHHHHHH
Q 022237 190 LTLGQSL-GI-SASTLTKI------LNSSSARCWSSDSYNPVPGVMEGVPASRN-YG-----G-GFASKLMAKDLNLALA 254 (300)
Q Consensus 190 ~~l~~~~-Gi-~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~-----~-~~~~~~~~kd~~~~~~ 254 (300)
..+++.. .- .+.++++. +.+-.++ +++.....+.. ++. .+ - .-......-..+.+.+
T Consensus 259 ~~F~~~f~p~~~~~t~~escGvaDlitTC~gG----RNr~~aeafak----tgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~ 330 (372)
T KOG2711|consen 259 IKFATHFYPGSKPTTFFESCGVADLITTCYGG----RNRKVAEAFAK----TGKSLEELEKELLNGQKLQGPATAKEVYE 330 (372)
T ss_pred HHHHHHhCCCCCcceeeccccHHHHHHHHhcC----ccHHHHHHHHH----cCCCHHHHHHHhhCCCcccCcHHHHHHHH
Confidence 8888764 22 34443332 2221111 01000000000 000 00 0 0001123334577788
Q ss_pred HHHHcCC--CchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcCC
Q 022237 255 SAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 297 (300)
Q Consensus 255 ~a~~~g~--~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 297 (300)
+++..++ ..|++.+++++. +++....++++++.+..
T Consensus 331 ~L~~~~l~~kfPlftaVykI~-------~~~~~~~~lle~l~~~~ 368 (372)
T KOG2711|consen 331 LLQKKGLVEKFPLFTAVYKIC-------YERLPPQALLECLRNHP 368 (372)
T ss_pred HHHHcChhhhCcHHHHHHHHH-------hcCCCHHHHHHHHhccc
Confidence 8888888 789999988886 35567777777766543
No 145
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.02 E-value=0.00092 Score=53.04 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC--------------CHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------TPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~--------------~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||.-+|..|.++|++|.++.|++ +.+.+.+.|..... +..+.....|+||+|+... ++++++..
T Consensus 9 iG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~~~~~l~~ 86 (151)
T PF02558_consen 9 IGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-QLEQALQS 86 (151)
T ss_dssp HHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-GHHHHHHH
T ss_pred HHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-chHHHHHH
Confidence 68999999999999999999999 88888776532211 1224567899999999776 77888876
Q ss_pred CCCccc
Q 022237 67 PNGLLQ 72 (300)
Q Consensus 67 ~~~~l~ 72 (300)
+++.+.
T Consensus 87 l~~~~~ 92 (151)
T PF02558_consen 87 LKPYLD 92 (151)
T ss_dssp HCTGEE
T ss_pred HhhccC
Confidence 666653
No 146
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.02 E-value=0.0021 Score=57.63 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=69.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|++||+++.. .. . ....++++++++||+|++++|-..+.+.++.. ..++. .++|.
T Consensus 158 IG~~va~~l~~fg~~V~~~~~~~~~--~~---~-~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~--~~l~~--mk~ga 227 (314)
T PRK06932 158 LGTEVGRLAQALGMKVLYAEHKGAS--VC---R-EGYTPFEEVLKQADIVTLHCPLTETTQNLINA--ETLAL--MKPTA 227 (314)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccc--cc---c-cccCCHHHHHHhCCEEEEcCCCChHHhcccCH--HHHHh--CCCCe
Confidence 5889999998889999999986431 11 1 12358999999999999999988788777764 34443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++-...-....+.+.+.+
T Consensus 228 ~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 228 FLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred EEEECCCccccCHHHHHHHHHc
Confidence 9999987776666677777764
No 147
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.02 E-value=0.0022 Score=57.57 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=68.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|++||+.... ... ...++++++++||+|++++|...+.+.++.. ..++. .+++.
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~------~~~-~~~~l~ell~~sDiv~l~lPlt~~T~~li~~--~~~~~--mk~ga 227 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRP------ARP-DRLPLDELLPQVDALTLHCPLTEHTRHLIGA--RELAL--MKPGA 227 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCc------ccc-cccCHHHHHHhCCEEEECCCCChHHhcCcCH--HHHhc--CCCCe
Confidence 5889999999889999999986421 111 1348999999999999999988888877764 24443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-...-....+.+.+.+
T Consensus 228 ~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 228 LLINTARGGLVDEQALADALRS 249 (317)
T ss_pred EEEECCCccccCHHHHHHHHHc
Confidence 9999887666666677777764
No 148
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.99 E-value=0.032 Score=48.10 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=77.1
Q ss_pred CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCC
Q 022237 33 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 112 (300)
Q Consensus 33 g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
|++.+++..|+++++|++|+-+|.......++.. +++. .++|.+|.+++|++|...-++.+.+++..
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikk---i~~~--ipEgAII~~tCTIpt~~ly~~le~l~R~D-------- 194 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEK---FADD--IKEGAIVTHACTIPTTKFAKIFKDLGRDD-------- 194 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHH---HHhh--CCCCCEEeccccCCHHHHHHHHHHhCccc--------
Confidence 6777888899999999999999988644555543 3333 46779999999999987777666654321
Q ss_pred CCceEE-EeccCCChHhhhcCceEEEec-cCHHHHHHHHHHHHhcCCCeEeeCC
Q 022237 113 ENPVML-DAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCGG 164 (300)
Q Consensus 113 ~~~~~~-~~pv~g~~~~~~~g~~~~~~~-g~~~~~~~~~~ll~~lg~~~~~~g~ 164 (300)
.|+... .+.+.+.+ |+..+--+ .+++..+++-++.+..++.++.+..
T Consensus 195 vgIsS~HPaaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA 243 (342)
T PRK00961 195 LNVTSYHPGAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPA 243 (342)
T ss_pred CCeeccCCCCCCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 111111 12244443 44222222 2788899999999999998887753
No 149
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.95 E-value=0.00067 Score=52.99 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=46.7
Q ss_pred ChHHHHHHHHhCCCe-EEEEcCChhhHHHHHhCC------CCCCCCHHHHhhcCCEEEEecCChhh
Q 022237 1 MGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMG------VPTKETPFEVAEASDVVITMLPSSSH 59 (300)
Q Consensus 1 mG~~la~~l~~~G~~-V~~~dr~~~~~~~~~~~g------~~~~~~~~e~~~~adiVii~vp~~~~ 59 (300)
||++++..|.+.|.+ |+++||+.++++++.+.- .....+..+.+.++|+||.|+|.+..
T Consensus 23 ~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 23 AARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 578999999999986 999999999998887651 12344566778999999999998743
No 150
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.91 E-value=0.0022 Score=57.46 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=56.0
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCCCC--CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~-g~~~~--~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||..+++.|...| ++|+++||++++...+.+. |.... .+..+++.++|+||.|+|.+.. ..++.. .+... .
T Consensus 189 iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~~~---~~~~~-~ 263 (311)
T cd05213 189 MGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIVER---AMKKR-S 263 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHHHH---HHhhC-C
Confidence 6888899998866 6899999999998777654 54322 2456778899999999998743 222221 11110 1
Q ss_pred CCCeEEEEcCC
Q 022237 77 VRPQLLIDSST 87 (300)
Q Consensus 77 ~~~~ivid~st 87 (300)
.++.++||.+.
T Consensus 264 ~~~~~viDlav 274 (311)
T cd05213 264 GKPRLIVDLAV 274 (311)
T ss_pred CCCeEEEEeCC
Confidence 24579999884
No 151
>PLN02306 hydroxypyruvate reductase
Probab=96.76 E-value=0.0056 Score=56.38 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=68.6
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChhh-HHHHH-hCC------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCNV-MKMFS-DMG------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~~-~~~~~-~~g------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
+|+.+|+.+. .-|.+|++||+++.. ...+. ..| .....++++++++||+|++++|-..+.+.++.
T Consensus 176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin 255 (386)
T PLN02306 176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLIN 255 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcC
Confidence 5888999985 668899999998642 22111 111 12235899999999999999998878777776
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 66 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
. ..++. .++|.++||++-..--....+.+.+.+
T Consensus 256 ~--~~l~~--MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 256 K--ERLAL--MKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred H--HHHHh--CCCCeEEEECCCccccCHHHHHHHHHh
Confidence 4 34443 467799999886665555666666654
No 152
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.74 E-value=0.0052 Score=57.58 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=58.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|+.+...|.+|+++++++.+.......|+.. .++.++++.+|+|++++.+...+. . ..++. .+++.
T Consensus 265 IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~iI~----~--e~~~~--MKpGA 335 (476)
T PTZ00075 265 VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDIIT----L--EHMRR--MKNNA 335 (476)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccccC----H--HHHhc--cCCCc
Confidence 589999999999999999999988875555566653 478899999999999986543222 1 12222 24567
Q ss_pred EEEEcCCCC
Q 022237 81 LLIDSSTID 89 (300)
Q Consensus 81 ivid~st~~ 89 (300)
+++|++-..
T Consensus 336 iLINvGr~d 344 (476)
T PTZ00075 336 IVGNIGHFD 344 (476)
T ss_pred EEEEcCCCc
Confidence 999987764
No 153
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.74 E-value=0.0054 Score=54.84 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=76.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|++|...|..+.-++|++...+...+.+.. ..+..+.+.++|+|++|.|.....+.++.+ ..++. .+++.
T Consensus 173 IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk--~~~~~--mk~g~ 247 (336)
T KOG0069|consen 173 IGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLINK--KFIEK--MKDGA 247 (336)
T ss_pred HHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhH--HHHHh--cCCCe
Confidence 58999999999994455558877777777666655 468899999999999999999999888874 35554 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-...-.-+.+.+.+.+
T Consensus 248 vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 248 VLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred EEEeccccccccHHHHHHHHhc
Confidence 9999887777777777777764
No 154
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.70 E-value=0.0072 Score=53.95 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=56.6
Q ss_pred ChHHHHHHHHh-CCC-eEEEEcCChhhHHHHHhC----CCCC-CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMK-AGY-KMAVHDVNCNVMKMFSDM----GVPT-KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~-~G~-~V~~~dr~~~~~~~~~~~----g~~~-~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||...++.+.. .+. +|.+|||++++++.+.+. +... +.+.++++.++|+|+.|+|.+. .++.. .
T Consensus 136 qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl~~~---~--- 206 (304)
T PRK07340 136 QARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PVYPE---A--- 206 (304)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---ceeCc---c---
Confidence 45666777754 453 699999999998877654 2222 4678899999999999999873 34432 1
Q ss_pred CCCCCCeEEEEcCCCCHHH
Q 022237 74 GNSVRPQLLIDSSTIDPQT 92 (300)
Q Consensus 74 ~~~~~~~ivid~st~~p~~ 92 (300)
.++|+.|+..++..|..
T Consensus 207 --~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 207 --ARAGRLVVAVGAFTPDM 223 (304)
T ss_pred --CCCCCEEEecCCCCCCc
Confidence 34567777777766653
No 155
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.69 E-value=0.0035 Score=46.74 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHH---hCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFS---DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~---~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
..+++.|.+.|.+|.+||..-....... ..+.....++.++++++|+||++++.+ +.+.+-. +.+... ..++
T Consensus 20 ~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~--~~~~~~--~~~~ 94 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDW--EEIAKL--MRKP 94 (106)
T ss_dssp HHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGH--HHHHHH--SCSS
T ss_pred HHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCH--HHHHHh--cCCC
Confidence 4688999999999999998866554444 246777789999999999999999887 5554211 111111 1244
Q ss_pred eEEEEcCCC
Q 022237 80 QLLIDSSTI 88 (300)
Q Consensus 80 ~ivid~st~ 88 (300)
++|+|+-++
T Consensus 95 ~~iiD~~~~ 103 (106)
T PF03720_consen 95 PVIIDGRNI 103 (106)
T ss_dssp EEEEESSST
T ss_pred CEEEECccc
Confidence 799998764
No 156
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=96.68 E-value=0.018 Score=44.67 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=49.2
Q ss_pred EEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022237 135 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG---AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 206 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a---~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~ 206 (300)
.+.+.||++..+.++++++.+|.+++.+.+-... .+.-+++|+.. ..+..+..++++.|++.++..++
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~----~L~~~a~~ll~~~gi~~~~a~~~ 73 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLV----ALYALAAELLEQAGIDFEEALEA 73 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTT-SHHH--HH
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHH----HHHHHHHHHHHHcCCCchhHHHH
Confidence 4556679999999999999999999999763333 55566778777 66677888899999999554443
No 157
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.68 E-value=0.0053 Score=58.29 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=58.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC--CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||.+++..|.+.|++|+++||++++++.+.+. +... ..+.. .+.++|+||.|+|....+.. .+
T Consensus 343 iG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~-~l~~~DiVInatP~g~~~~~-------~l------ 408 (477)
T PRK09310 343 AAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLP-ELHRIDIIINCLPPSVTIPK-------AF------ 408 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhc-ccCCCCEEEEcCCCCCcchh-------HH------
Confidence 68999999999999999999999988877654 2111 11222 25689999999998743211 11
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
. ++++|++..++.+. +.+.++
T Consensus 409 ~-~~v~D~~Y~P~~T~--ll~~A~ 429 (477)
T PRK09310 409 P-PCVVDINTLPKHSP--YTQYAR 429 (477)
T ss_pred h-hhEEeccCCCCCCH--HHHHHH
Confidence 1 48999998776654 444444
No 158
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.63 E-value=0.0029 Score=56.72 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=48.2
Q ss_pred CeEEEEcCChhhHHHHHhC----CC--CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 14 YKMAVHDVNCNVMKMFSDM----GV--PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 14 ~~V~~~dr~~~~~~~~~~~----g~--~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
.+|.+|||++++++++.+. +. ..+++.++++++||||++|++... .++.. +. .++|+.|+-.++
T Consensus 154 ~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---P~~~~--~~-----l~~G~hi~~iGs 223 (315)
T PRK06823 154 RQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---PLLQA--ED-----IQPGTHITAVGA 223 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC---ceeCH--HH-----cCCCcEEEecCC
Confidence 3799999999998876542 33 336789999999999999998662 34421 12 345677776666
Q ss_pred CCHH
Q 022237 88 IDPQ 91 (300)
Q Consensus 88 ~~p~ 91 (300)
..|.
T Consensus 224 ~~p~ 227 (315)
T PRK06823 224 DSPG 227 (315)
T ss_pred CCcc
Confidence 6664
No 159
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.60 E-value=0.0028 Score=56.83 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=41.5
Q ss_pred eEEEEcCChhhHHHHHhC----CC--CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 15 KMAVHDVNCNVMKMFSDM----GV--PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~~----g~--~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
+|.+|+|++++++++.+. +. ..+.++++++++||+|+.|+|.... ..++.. +. .++|+.|+..++.
T Consensus 155 ~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~-~P~~~~--~~-----l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 155 EVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP-APVFDA--EW-----LKPGTHINAIGSY 226 (313)
T ss_dssp EEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE-EESB-G--GG-----S-TT-EEEE-S-S
T ss_pred EEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC-CccccH--HH-----cCCCcEEEEecCC
Confidence 799999999988877553 33 4577999999999999999988731 134321 12 3556777776766
Q ss_pred CHH
Q 022237 89 DPQ 91 (300)
Q Consensus 89 ~p~ 91 (300)
.|.
T Consensus 227 ~~~ 229 (313)
T PF02423_consen 227 TPG 229 (313)
T ss_dssp STT
T ss_pred CCc
Confidence 554
No 160
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.60 E-value=0.0085 Score=55.71 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=60.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhh-hhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~-~v~~~~~~~l~~~~~~~~ 79 (300)
||..+|+.+...|.+|+++|+++.+.......|... .+.+++++.+|+||.|+.+...+. +.+. . .++|
T Consensus 223 IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~~~~~----~-----mK~G 292 (425)
T PRK05476 223 VGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITAEHME----A-----MKDG 292 (425)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHHHHHh----c-----CCCC
Confidence 588999999999999999999999877766667653 467889999999999987664443 2221 1 2455
Q ss_pred eEEEEcCCCCH
Q 022237 80 QLLIDSSTIDP 90 (300)
Q Consensus 80 ~ivid~st~~p 90 (300)
.++++.+....
T Consensus 293 ailiNvG~~d~ 303 (425)
T PRK05476 293 AILANIGHFDN 303 (425)
T ss_pred CEEEEcCCCCC
Confidence 78888776553
No 161
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.52 E-value=0.0065 Score=50.45 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=54.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCC--C--CCC---HHHHhhcCCEEEEecCChhhhhhhhcCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVP--T--KET---PFEVAEASDVVITMLPSSSHVLDVYNGPN 68 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~--~--~~~---~~e~~~~adiVii~vp~~~~~~~v~~~~~ 68 (300)
+|..+++.|++.|++|++++|++++++.+.+. +.. . ..+ ..++++++|+||.++|.+.... .. ..
T Consensus 40 iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~-~~--~~ 116 (194)
T cd01078 40 VGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAGVELL-EK--LA 116 (194)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCCceec-hh--hh
Confidence 47889999999999999999999988776542 111 1 122 3467889999999998874311 11 01
Q ss_pred CcccCCCCCCCeEEEEcCCCCH
Q 022237 69 GLLQGGNSVRPQLLIDSSTIDP 90 (300)
Q Consensus 69 ~~l~~~~~~~~~ivid~st~~p 90 (300)
.. ..++.+++|..-..+
T Consensus 117 ~~-----~~~~~vv~D~~~~~~ 133 (194)
T cd01078 117 WA-----PKPLAVAADVNAVPP 133 (194)
T ss_pred cc-----cCceeEEEEccCCCC
Confidence 01 123578999765444
No 162
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.50 E-value=0.015 Score=53.82 Aligned_cols=88 Identities=15% Similarity=0.095 Sum_probs=63.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhh-hhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~-v~~~~~~~l~~~~~~~~ 79 (300)
+|..+|+.+...|.+|+++|+++.+.......|... .+.+++++.+|+||.++.....+.. .+. . .++|
T Consensus 206 IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v-~~leeal~~aDVVItaTG~~~vI~~~~~~----~-----mK~G 275 (406)
T TIGR00936 206 CGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKIGDIFITATGNKDVIRGEHFE----N-----MKDG 275 (406)
T ss_pred HHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe-CCHHHHHhcCCEEEECCCCHHHHHHHHHh----c-----CCCC
Confidence 488899999999999999999998877666667644 3568889999999999977644442 221 1 2455
Q ss_pred eEEEEcCCCCH-HHHHHHHH
Q 022237 80 QLLIDSSTIDP-QTSRNISA 98 (300)
Q Consensus 80 ~ivid~st~~p-~~~~~~~~ 98 (300)
.++++.+-... -....+.+
T Consensus 276 ailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 276 AIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred cEEEEECCCCceeCHHHHHH
Confidence 78898776543 33334433
No 163
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.50 E-value=0.0065 Score=54.15 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=46.9
Q ss_pred eEEEEcCChhhHHHHHhC-----C--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 15 KMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~~-----g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
+|.+|||++++++++.+. | +..+.++++++++||||++|+|... .++.. +. .++|+.|.-.++
T Consensus 144 ~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~---P~~~~--~~-----l~pg~hV~aiGs 213 (301)
T PRK06407 144 RIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT---PIFNR--KY-----LGDEYHVNLAGS 213 (301)
T ss_pred EEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC---cEecH--HH-----cCCCceEEecCC
Confidence 799999999998877543 4 3456899999999999999998762 34321 12 234566665555
Q ss_pred CCHH
Q 022237 88 IDPQ 91 (300)
Q Consensus 88 ~~p~ 91 (300)
..|.
T Consensus 214 ~~p~ 217 (301)
T PRK06407 214 NYPN 217 (301)
T ss_pred CCCC
Confidence 5554
No 164
>PLN02494 adenosylhomocysteinase
Probab=96.48 E-value=0.011 Score=55.41 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=59.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhh-hhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV-LDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~-~~v~~~~~~~l~~~~~~~~ 79 (300)
+|..+|+.+...|.+|+++++++.+.......|.... +.+++++.+|+||.+..+...+ .+.+. . .+++
T Consensus 265 IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e~L~----~-----MK~G 334 (477)
T PLN02494 265 VGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVDHMR----K-----MKNN 334 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHHHHh----c-----CCCC
Confidence 5899999999999999999999988766666676543 6788999999999988765333 33332 1 2455
Q ss_pred eEEEEcCCC
Q 022237 80 QLLIDSSTI 88 (300)
Q Consensus 80 ~ivid~st~ 88 (300)
.++++++..
T Consensus 335 AiLiNvGr~ 343 (477)
T PLN02494 335 AIVCNIGHF 343 (477)
T ss_pred CEEEEcCCC
Confidence 799998774
No 165
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.47 E-value=0.0045 Score=47.28 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=46.7
Q ss_pred ChHHHHHHHHhC-CCeEEEE-cCChhhHHHHHhCCCCC------CCCHHHH-hhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKA-GYKMAVH-DVNCNVMKMFSDMGVPT------KETPFEV-AEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~-dr~~~~~~~~~~~g~~~------~~~~~e~-~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
+|..++..|.+. ++++... ++++++.+.+...+... .-+..+. ..++|+||+|+|++... +++.. +.
T Consensus 11 ~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~-~~~~~---~~ 86 (122)
T smart00859 11 VGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSK-EIAPL---LP 86 (122)
T ss_pred HHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHH-HHHHH---HH
Confidence 355677777774 7777654 76654444433322110 0111111 25899999999998544 44321 11
Q ss_pred cCCCCCCCeEEEEcCCCC
Q 022237 72 QGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~ 89 (300)
.. ..+|++|||+|++.
T Consensus 87 ~~--~~~g~~viD~s~~~ 102 (122)
T smart00859 87 KA--AEAGVKVIDLSSAF 102 (122)
T ss_pred hh--hcCCCEEEECCccc
Confidence 11 24568999999864
No 166
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.38 E-value=0.01 Score=53.59 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=43.7
Q ss_pred ChHHHHHHHHh-CCC-eEEEEcCChhhHHHHHhC-----CCC--CCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMK-AGY-KMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~-~G~-~V~~~dr~~~~~~~~~~~-----g~~--~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|...++.|.. .+. +|++|+|++++++++.+. |.. ...+++++++++|+|+.|+|..
T Consensus 140 qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 140 QARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred HHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 35566777763 564 699999999999887653 433 3578899999999999999876
No 167
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=96.37 E-value=0.019 Score=54.09 Aligned_cols=145 Identities=13% Similarity=0.134 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCC--CeEeeCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHH
Q 022237 142 EDAYQAAKPLFLSMGK--NTIYCGGAG-----NGAAAKICNNLTMAVSMLGVSEALTLGQS----L--GISASTLTKILN 208 (300)
Q Consensus 142 ~~~~~~~~~ll~~lg~--~~~~~g~~g-----~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~----~--Gi~~~~~~~~~~ 208 (300)
++++.+..+.++.... ...+.|+.+ .++.+|++.|++.+..+.+.+|++.+.++ + .+|..++.++++
T Consensus 271 ~AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 350 (459)
T PRK09287 271 EAVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWR 350 (459)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 4566666666655421 112345433 27899999999999999999999999987 4 589999999999
Q ss_pred hcC-CCccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q 022237 209 SSS-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 283 (300)
Q Consensus 209 ~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~ 283 (300)
.|+ ..||+++..... +.....-.+ +.+.|. +......++.++..+-+.|+|+|.+.+++..|+.....-+..
T Consensus 351 ~GcIIRs~lL~~i~~a---~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~a 427 (459)
T PRK09287 351 GGCIIRAQFLQKITDA---YEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPA 427 (459)
T ss_pred CCCEEeHHHHHHHHHH---HHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Confidence 887 567765432211 000000001 111121 233444568899999999999999999998888777665554
Q ss_pred CchHHH
Q 022237 284 KDFSCV 289 (300)
Q Consensus 284 ~d~~~~ 289 (300)
.=+.+.
T Consensus 428 nliqaq 433 (459)
T PRK09287 428 NLIQAQ 433 (459)
T ss_pred HHHHHH
Confidence 434433
No 168
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.33 E-value=0.023 Score=53.76 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcCC--CeEeeCCcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHH
Q 022237 142 EDAYQAAKPLFLSMGK--NTIYCGGAG------NGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKIL 207 (300)
Q Consensus 142 ~~~~~~~~~ll~~lg~--~~~~~g~~g------~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~ 207 (300)
.+++++..+.++.... ...+.|+.+ ..+.+|++.|++.+..+.+.+|++.+.++ +++|..++.+++
T Consensus 278 ~av~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iW 357 (467)
T TIGR00873 278 ESVFARYLSSLKEERVAASKVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIW 357 (467)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 4556666666655421 112334422 37899999999999999999999999987 789999999999
Q ss_pred HhcC-CCccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCC
Q 022237 208 NSSS-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 282 (300)
Q Consensus 208 ~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g 282 (300)
+.++ ..+++++..... +.....-.+ +++.|. +......++.++..+-+.|+|+|.+.++...|+.....-+.
T Consensus 358 r~GcIIrs~lL~~i~~a---~~~~~~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~ 434 (467)
T TIGR00873 358 RGGCIIRSGFLDKITKA---FAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLP 434 (467)
T ss_pred CCCceeeHhHHHHHHHH---HHcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCccc
Confidence 9987 567765532211 100000001 111121 23445556889999999999999999999888887764444
No 169
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.33 E-value=0.0072 Score=54.24 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=50.1
Q ss_pred CeEEEEcCChhhHHHHHhC----C---CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcC
Q 022237 14 YKMAVHDVNCNVMKMFSDM----G---VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS 86 (300)
Q Consensus 14 ~~V~~~dr~~~~~~~~~~~----g---~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s 86 (300)
-+|.+|+|+++.++++... + +..+.|.++++++||+|+.|+|+.. .++.. +. .++|+.|.-.+
T Consensus 156 ~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---Pil~~--~~-----l~~G~hI~aiG 225 (330)
T COG2423 156 REIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---PVLKA--EW-----LKPGTHINAIG 225 (330)
T ss_pred cEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---CeecH--hh-----cCCCcEEEecC
Confidence 3799999999998887643 3 4578899999999999999999884 44431 22 34566666556
Q ss_pred CCCHHHH
Q 022237 87 TIDPQTS 93 (300)
Q Consensus 87 t~~p~~~ 93 (300)
+-.|...
T Consensus 226 ad~p~k~ 232 (330)
T COG2423 226 ADAPGKR 232 (330)
T ss_pred CCCcccc
Confidence 5555433
No 170
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.28 E-value=0.017 Score=53.57 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=58.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhh-hcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV-YNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v-~~~~~~~l~~~~~~~~ 79 (300)
+|..+++.+...|.+|+++|+++.+.......|+... +.+++++.+|+||.|+..+..+..- +. .+ ++|
T Consensus 213 IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~~l~----~m-----k~G 282 (413)
T cd00401 213 VGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGEHFE----QM-----KDG 282 (413)
T ss_pred HHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHHHHh----cC-----CCC
Confidence 5888999999999999999999999988888887543 5678889999999999776444432 21 22 344
Q ss_pred eEEEEcCC
Q 022237 80 QLLIDSST 87 (300)
Q Consensus 80 ~ivid~st 87 (300)
.++++.+.
T Consensus 283 gilvnvG~ 290 (413)
T cd00401 283 AIVCNIGH 290 (413)
T ss_pred cEEEEeCC
Confidence 68887774
No 171
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.21 E-value=0.0079 Score=54.53 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=46.9
Q ss_pred CeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 14 YKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 14 ~~V~~~dr~~~~~~~~~~~----g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
.+|++|+|++++++.+.+. + +..+.++++++++||||++|+|.. .-..++.. +. .++|+.|.-.++
T Consensus 155 ~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~Pvl~~--~~-----lkpG~hV~aIGs 226 (346)
T PRK07589 155 EEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNATILTD--DM-----VEPGMHINAVGG 226 (346)
T ss_pred eEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCCceecH--HH-----cCCCcEEEecCC
Confidence 3799999999998876543 3 334678999999999999999754 21133321 12 345566665555
Q ss_pred CCHH
Q 022237 88 IDPQ 91 (300)
Q Consensus 88 ~~p~ 91 (300)
..|.
T Consensus 227 ~~p~ 230 (346)
T PRK07589 227 DCPG 230 (346)
T ss_pred CCCC
Confidence 5554
No 172
>PLN00203 glutamyl-tRNA reductase
Probab=96.12 E-value=0.0087 Score=57.19 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=46.5
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--CCC----CCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--GVP----TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~--g~~----~~~~~~e~~~~adiVii~vp~~ 57 (300)
||..+++.|...|+ +|+++||++++++.+.+. +.. ...+..+++.++|+||.|+|.+
T Consensus 277 mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 277 MGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 78999999999997 699999999999888764 221 2346677889999999998665
No 173
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.05 E-value=0.017 Score=52.14 Aligned_cols=81 Identities=10% Similarity=0.122 Sum_probs=55.1
Q ss_pred hHHHHHHHHh-CCC-eEEEEcCChhhHHHHHhC-----CC--CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 2 GFRMASNLMK-AGY-KMAVHDVNCNVMKMFSDM-----GV--PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 2 G~~la~~l~~-~G~-~V~~~dr~~~~~~~~~~~-----g~--~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
|...+..+.. .+. +|.+|||++++++++.+. +. ....+.++++.++|+|++|+|... .++. ..
T Consensus 139 a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~---p~i~---~~-- 210 (325)
T PRK08618 139 AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT---PVFS---EK-- 210 (325)
T ss_pred HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC---cchH---Hh--
Confidence 4455555543 343 799999999999887652 33 346788999999999999999873 2332 12
Q ss_pred CCCCCCCeEEEEcCCCCHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTS 93 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~ 93 (300)
.++|+.|+..++-.|...
T Consensus 211 ---l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 211 ---LKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred ---cCCCcEEEecCCCCcccc
Confidence 345677777777666543
No 174
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.03 E-value=0.016 Score=46.99 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=45.6
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|..+++.|.+.|.+|++.+|+. .++.+.+.++|+||.|++.+. ++.. +.+ .++.+
T Consensus 57 G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii~~--~~~-----~~~~v 111 (168)
T cd01080 57 GKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LVKG--DMV-----KPGAV 111 (168)
T ss_pred HHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----eecH--HHc-----cCCeE
Confidence 6678999999998899999873 355678899999999998873 2221 122 23478
Q ss_pred EEEcCCC
Q 022237 82 LIDSSTI 88 (300)
Q Consensus 82 vid~st~ 88 (300)
|||.+..
T Consensus 112 iIDla~p 118 (168)
T cd01080 112 VIDVGIN 118 (168)
T ss_pred EEEccCC
Confidence 9997763
No 175
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.97 E-value=0.02 Score=52.50 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=48.3
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCC---C-------CCCCCHHHHhhcCCEEEEecCChhhh
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG---V-------PTKETPFEVAEASDVVITMLPSSSHV 60 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~g---~-------~~~~~~~e~~~~adiVii~vp~~~~~ 60 (300)
+|++.|..|+++| ++|++.||++++++++.... . .....+.+++++.|+||.|.|.....
T Consensus 12 Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~~ 82 (389)
T COG1748 12 VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVDL 82 (389)
T ss_pred hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhhH
Confidence 4899999999999 89999999999999986653 1 12224567888999999999988543
No 176
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.94 E-value=0.045 Score=43.93 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=36.0
Q ss_pred CeEEEEcCChhh----HHHHHhCCCC------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEE
Q 022237 14 YKMAVHDVNCNV----MKMFSDMGVP------TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI 83 (300)
Q Consensus 14 ~~V~~~dr~~~~----~~~~~~~g~~------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivi 83 (300)
-+|.+.+|+.-- ...+.+.++. .+.++.+.+++||+||.+++.+..++. +. .++|.+||
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~~~i~~------~~-----ik~gavVI 105 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGKPNLIKA------DW-----IKPGAVVI 105 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSSTT-B-G------GG-----S-TTEEEE
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeecccccccc------cc-----ccCCcEEE
Confidence 456666666432 1223333432 124678889999999999988844321 12 35668999
Q ss_pred EcCCCCH
Q 022237 84 DSSTIDP 90 (300)
Q Consensus 84 d~st~~p 90 (300)
|++....
T Consensus 106 DvG~~~~ 112 (160)
T PF02882_consen 106 DVGINYV 112 (160)
T ss_dssp E--CEEE
T ss_pred ecCCccc
Confidence 9887544
No 177
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.90 E-value=0.015 Score=53.41 Aligned_cols=83 Identities=13% Similarity=0.170 Sum_probs=53.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCC---CC---CCHHHHhhcCCEEEEecCChhh-hhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVP---TK---ETPFEVAEASDVVITMLPSSSH-VLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~---~~---~~~~e~~~~adiVii~vp~~~~-~~~v~~~~~~~l~ 72 (300)
+|...++.+.+.|.+|+++||++++++.+... +.. .. .++.+.++++|+||.|++.+.. ...++. ...+.
T Consensus 178 vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit--~~~l~ 255 (370)
T TIGR00518 178 VGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVS--NSLVA 255 (370)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcC--HHHHh
Confidence 47888999999999999999999998877654 221 11 2345678899999999854211 111221 11222
Q ss_pred CCCCCCCeEEEEcCC
Q 022237 73 GGNSVRPQLLIDSST 87 (300)
Q Consensus 73 ~~~~~~~~ivid~st 87 (300)
. .+++.+|||.+.
T Consensus 256 ~--mk~g~vIvDva~ 268 (370)
T TIGR00518 256 Q--MKPGAVIVDVAI 268 (370)
T ss_pred c--CCCCCEEEEEec
Confidence 2 234578999775
No 178
>PRK06046 alanine dehydrogenase; Validated
Probab=95.88 E-value=0.021 Score=51.58 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=53.0
Q ss_pred ChHHHHHHHHhC-CC-eEEEEcCChhhHHHHHhC-----CC--CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKA-GY-KMAVHDVNCNVMKMFSDM-----GV--PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~-G~-~V~~~dr~~~~~~~~~~~-----g~--~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||...++.|... +. .|.+|||++++.+++.+. +. ....+.+++++ +|+|++|+|... .++.. +.
T Consensus 140 qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~---P~~~~--~~- 212 (326)
T PRK06046 140 QARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK---PVVKA--EW- 212 (326)
T ss_pred HHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---cEecH--HH-
Confidence 355666666643 33 688999999998877653 32 34668888887 999999999862 34321 11
Q ss_pred cCCCCCCCeEEEEcCCCCHH
Q 022237 72 QGGNSVRPQLLIDSSTIDPQ 91 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~ 91 (300)
.++|+.|...++..|.
T Consensus 213 ----l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 213 ----IKEGTHINAIGADAPG 228 (326)
T ss_pred ----cCCCCEEEecCCCCCc
Confidence 3455677766665554
No 179
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.83 E-value=0.011 Score=55.26 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCC--CCCCHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVP--TKETPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~-g~~--~~~~~~e~~~~adiVii~vp~~~ 58 (300)
||..+++.|...| .+|++|||+++++..+.+. |.. ...+..+.+.++|+||.|++.+.
T Consensus 191 iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 191 MGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 6889999999999 7899999999988777654 432 22456678889999999997764
No 180
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.82 E-value=0.072 Score=40.15 Aligned_cols=94 Identities=20% Similarity=0.333 Sum_probs=65.2
Q ss_pred hHHHHHHHHhC--CCeEE-EEcCChhhHHHHHh-CCCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 2 GFRMASNLMKA--GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 2 G~~la~~l~~~--G~~V~-~~dr~~~~~~~~~~-~g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
|......+.+. ++++. ++|+++++.+.+.+ .|....+|.++.++ +.|+|++++|+....+-+.. .++.
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~----~l~~-- 85 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKK----ALEA-- 85 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHH----HHHT--
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHHH----HHHc--
Confidence 44555666665 44654 78999999988744 47788889999987 79999999999865544432 2321
Q ss_pred CCCCeEEEEcC-CCCHHHHHHHHHHHhhh
Q 022237 76 SVRPQLLIDSS-TIDPQTSRNISAAVSNC 103 (300)
Q Consensus 76 ~~~~~ivid~s-t~~p~~~~~~~~~~~~~ 103 (300)
+..++++-= ...+.+.+++.+...+.
T Consensus 86 --g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 86 --GKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp --TSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred --CCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 225666632 35778888888887653
No 181
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.80 E-value=0.045 Score=42.95 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=46.1
Q ss_pred CCeEEEEcCChhhHHHHH----hCCCC--CCC----CHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEE
Q 022237 13 GYKMAVHDVNCNVMKMFS----DMGVP--TKE----TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL 82 (300)
Q Consensus 13 G~~V~~~dr~~~~~~~~~----~~g~~--~~~----~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~iv 82 (300)
|.+|.+|+|+....+.+. +.|+. .++ ++++.+++||+|+.+++.+.. +. .+. .++|.+|
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~----i~--~~~-----ikpGa~V 96 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEK----VP--TEW-----IKPGATV 96 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCc----cC--HHH-----cCCCCEE
Confidence 558999999988765543 34543 233 788999999999999988722 21 112 3566899
Q ss_pred EEcCCCC
Q 022237 83 IDSSTID 89 (300)
Q Consensus 83 id~st~~ 89 (300)
+|.+...
T Consensus 97 idvg~~~ 103 (140)
T cd05212 97 INCSPTK 103 (140)
T ss_pred EEcCCCc
Confidence 9987655
No 182
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.65 E-value=0.032 Score=50.48 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=42.7
Q ss_pred hHHHHHHHHh-CC-CeEEEEcCChhhHHHHHhC-----CCC--CCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~-~G-~~V~~~dr~~~~~~~~~~~-----g~~--~~~~~~e~~~~adiVii~vp~~ 57 (300)
|.+.+..+.. .+ .+|.+|+|++++++.+.+. |.. ...++++++.++|+|+.|+|..
T Consensus 144 a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 144 ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 4555566664 34 4799999999999888663 333 3578889999999999999876
No 183
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.62 E-value=0.041 Score=48.43 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=45.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|.++|..|...|..|++++++. .++.+.+++||+||.+++.+.-+.. +.+ ++|.
T Consensus 170 VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~------~~v-----k~ga 224 (286)
T PRK14175 170 VGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK------DVV-----KEGA 224 (286)
T ss_pred hHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH------HHc-----CCCc
Confidence 47788888888888888877542 3567889999999999988732221 122 3458
Q ss_pred EEEEcCCC
Q 022237 81 LLIDSSTI 88 (300)
Q Consensus 81 ivid~st~ 88 (300)
+|||.++.
T Consensus 225 vVIDvGi~ 232 (286)
T PRK14175 225 VIIDVGNT 232 (286)
T ss_pred EEEEcCCC
Confidence 99998763
No 184
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.54 E-value=0.047 Score=45.04 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=50.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---CCCCC--CC----HHHHhhcCCEEEEecCChhh-hhhhhcCCCCc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---GVPTK--ET----PFEVAEASDVVITMLPSSSH-VLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~---g~~~~--~~----~~e~~~~adiVii~vp~~~~-~~~v~~~~~~~ 70 (300)
.|.+||.-|.+.|..|+++|.+.-.. +... .-..+ .+ +.+.+++|||||.+++.+.- +. .+.
T Consensus 74 VGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~------~d~ 145 (197)
T cd01079 74 VGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVP------TEL 145 (197)
T ss_pred chHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccC------HHH
Confidence 48899999999999999997654322 1100 00011 12 67889999999999999843 22 112
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
.++|.+|||.++..
T Consensus 146 -----ik~GavVIDVGi~~ 159 (197)
T cd01079 146 -----LKDGAICINFASIK 159 (197)
T ss_pred -----cCCCcEEEEcCCCc
Confidence 34568999988754
No 185
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.53 E-value=0.051 Score=47.76 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=40.3
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.+++..|.+.|..|++++. .+.++.+.+++||+||.+++.+.-+.. +. .++|.+
T Consensus 171 GkPla~lL~~~~atVt~~hs--------------~t~~l~~~~~~ADIVV~avG~~~~i~~------~~-----ik~gav 225 (285)
T PRK14189 171 GKPMAMLLLQAGATVTICHS--------------KTRDLAAHTRQADIVVAAVGKRNVLTA------DM-----VKPGAT 225 (285)
T ss_pred HHHHHHHHHHCCCEEEEecC--------------CCCCHHHHhhhCCEEEEcCCCcCccCH------HH-----cCCCCE
Confidence 55555555555555555432 134677889999999999998733221 12 345689
Q ss_pred EEEcCCC
Q 022237 82 LIDSSTI 88 (300)
Q Consensus 82 vid~st~ 88 (300)
|||.++.
T Consensus 226 VIDVGin 232 (285)
T PRK14189 226 VIDVGMN 232 (285)
T ss_pred EEEcccc
Confidence 9998864
No 186
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.52 E-value=0.015 Score=54.50 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=46.1
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCC--CCCHHHHhhcCCEEEEecCChhh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPT--KETPFEVAEASDVVITMLPSSSH 59 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~~~--~~~~~e~~~~adiVii~vp~~~~ 59 (300)
||..+++.|...|+ +|+++||+++++..+... |... ..+..+.+.++|+||.|+|.+..
T Consensus 193 iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 193 MGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHP 255 (423)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCc
Confidence 68889999999997 799999999998877654 4322 23456678899999999987743
No 187
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.50 E-value=0.12 Score=48.87 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCCCCCC--C
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQS----L--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 236 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~----~--Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 236 (300)
+.++.+|.+.|++.+..+.+.+|++.+.++ + ++|..++.++++.++ ..+++++..... +.....-.+ +
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a---~~~~~~l~nl~~ 392 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNA---FKKNPQLDLLFL 392 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHH---HhcCCChhhhcC
Confidence 678999999999999999999999999873 4 899999999999887 567765532211 000000001 1
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCC
Q 022237 237 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 282 (300)
Q Consensus 237 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g 282 (300)
.+.|. +......++.++..+-+.|+|+|.+.+++..|+.....-+.
T Consensus 393 ~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~ 440 (470)
T PTZ00142 393 DPDFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLP 440 (470)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc
Confidence 11121 23344556889999999999999999999977776655444
No 188
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.33 E-value=0.026 Score=52.50 Aligned_cols=58 Identities=5% Similarity=0.060 Sum_probs=46.9
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-C-CC--CCCCHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G-VP--TKETPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g-~~--~~~~~~e~~~~adiVii~vp~~~ 58 (300)
||..++..|...|. +++++||++++++.+.+. + .. ..++..+.+.++|+||.|++.+.
T Consensus 192 ~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 192 TGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 78999999999995 799999999999888765 2 22 22445677889999999998873
No 189
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.32 E-value=0.028 Score=51.81 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=46.9
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCC--CCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVP--TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~-g~~--~~~~~~e~~~~adiVii~vp~~ 57 (300)
||.-.|++|..+| .+|++.||+.+++.++.+. |+. ..+.+.+.+.++|+||.++..+
T Consensus 189 m~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 189 MGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 7888999999999 5799999999999988775 533 3445677889999999998655
No 190
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.32 E-value=0.056 Score=48.28 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=40.6
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHH----HhC--------CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SDM--------GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~----~~~--------g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||..+|..++..|+ +|.++|++++..+.. .+. .+..+.+.++ +++||+||++++.+
T Consensus 12 vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 12 VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 79999999999887 899999987654311 111 1223456665 78999999999854
No 191
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.032 Score=47.55 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=47.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh--CCCC---C-CC---CHHHH-hhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--MGVP---T-KE---TPFEV-AEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~--~g~~---~-~~---~~~e~-~~~adiVii~vp~~~~~~~v~~ 65 (300)
+|+.+|+.|.+.||+|.+.|++++++++... .... . .+ .+.++ +.++|+++.++.++ .+..++.
T Consensus 11 vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d-~~N~i~~ 84 (225)
T COG0569 11 VGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND-EVNSVLA 84 (225)
T ss_pred HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC-HHHHHHH
Confidence 5899999999999999999999999988554 2221 1 11 23344 56899999999887 5444443
No 192
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.25 E-value=0.056 Score=48.25 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=38.7
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHH----hC----C--CC--CCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----DM----G--VP--TKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~----~~----g--~~--~~~~~~e~~~~adiVii~vp 55 (300)
||.++|..++..|+ +|.++|+++++++... +. + .+ ...+. +.+++||+||+++.
T Consensus 13 vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 13 VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 68999999999876 9999999987654321 11 1 11 22344 56899999999974
No 193
>PRK04148 hypothetical protein; Provisional
Probab=95.22 E-value=0.094 Score=40.67 Aligned_cols=63 Identities=16% Similarity=0.324 Sum_probs=48.9
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-----CCCCHHHHhhcCCEEEEecCChhhhhhhh
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TKETPFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----~~~~~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
|..+|..|.+.|++|++.|.|++.++.+.+.+.. .....-+..+++|+|-.+-|.++-.+.++
T Consensus 28 G~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~ 95 (134)
T PRK04148 28 YFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL 95 (134)
T ss_pred CHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 4568999999999999999999999888777543 22334567889999999999885444443
No 194
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.14 E-value=0.058 Score=48.04 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=38.9
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHH----HHhC----C----CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM----G----VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~----~~~~----g----~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..+|..|+..|+ +|+++|++++++.. +... + +....+ .+.+++||+||+++..
T Consensus 9 vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g~ 76 (300)
T cd01339 9 VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAGI 76 (300)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecCC
Confidence 79999999998887 99999999876431 1111 1 112234 4568999999998843
No 195
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.12 E-value=0.036 Score=48.78 Aligned_cols=58 Identities=9% Similarity=0.060 Sum_probs=44.0
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCC-C----CCCCCHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG-V----PTKETPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~g-~----~~~~~~~e~~~~adiVii~vp~~~ 58 (300)
+|++++..|.+.| .+|+++||++++++.+.+.- . ....+..+.+.++|+||-|+|...
T Consensus 134 ~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 134 AARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM 197 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence 4789999999999 68999999999988876541 1 111123466788999999998763
No 196
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.093 Score=46.11 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=40.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.+++.-|.+.|..|+++++. +.++.+.++++|+||.+++.+..+.. +. .++|.+
T Consensus 172 G~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~------~~-----vk~gav 226 (285)
T PRK10792 172 GRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPG------EW-----IKPGAI 226 (285)
T ss_pred HHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccH------HH-----cCCCcE
Confidence 555555555555555555432 34678889999999999988743322 12 345689
Q ss_pred EEEcCCC
Q 022237 82 LIDSSTI 88 (300)
Q Consensus 82 vid~st~ 88 (300)
|||.++.
T Consensus 227 VIDvGin 233 (285)
T PRK10792 227 VIDVGIN 233 (285)
T ss_pred EEEcccc
Confidence 9998753
No 197
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.92 E-value=0.058 Score=52.88 Aligned_cols=64 Identities=11% Similarity=0.211 Sum_probs=49.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHH---H-HhhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---E-VAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---e-~~~~adiVii~vp~~~~~~~v~ 64 (300)
+|..+++.|.++|+++++.|.|+++++.+.+.|... +++++ + -++++|.+++++++++....+.
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~ 482 (601)
T PRK03659 411 FGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKIV 482 (601)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHH
Confidence 478899999999999999999999999998877532 12222 1 1568999999999986654444
No 198
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.81 E-value=0.062 Score=47.15 Aligned_cols=68 Identities=26% Similarity=0.288 Sum_probs=53.0
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc-CCCCcc
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN-GPNGLL 71 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~-~~~~~l 71 (300)
|.+=|.+|..+|.+|++--|.-.. .+...+.|... .+.+|+++.+|+|++.+||. .-.+|+. ++.+.+
T Consensus 30 G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe-~q~~vy~~~I~p~L 99 (338)
T COG0059 30 GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDE-QQKEVYEKEIAPNL 99 (338)
T ss_pred HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchh-hHHHHHHHHhhhhh
Confidence 677889999999999887665544 67777778775 58999999999999999997 4466776 444444
No 199
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.81 E-value=0.15 Score=44.40 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=60.9
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||..+++.+.+. ++++. ++|+++++.......++....+++++++++|+|+.++|.. ...+++.. .++. +
T Consensus 13 mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~-~~~~~~~~---al~~----G 84 (257)
T PRK00048 13 MGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPE-ATLENLEF---ALEH----G 84 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHH-HHHHHHHH---HHHc----C
Confidence 788888888764 67755 5899987765553335666788888888999999888665 44555432 2321 2
Q ss_pred CeEEEEcCCCCHHHHHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRNISA 98 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~ 98 (300)
-.+|+-+++.++....++.+
T Consensus 85 ~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 85 KPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred CCEEEECCCCCHHHHHHHHH
Confidence 25666655667777777766
No 200
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.81 E-value=0.12 Score=45.36 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=29.8
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++|||||.+++.+.-+.. +. .++|.+|||.++..
T Consensus 192 ~~l~~~~~~ADIvI~AvG~~~~i~~------~~-----vk~GavVIDvGin~ 232 (284)
T PRK14170 192 KDLPQVAKEADILVVATGLAKFVKK------DY-----IKPGAIVIDVGMDR 232 (284)
T ss_pred CCHHHHHhhCCEEEEecCCcCccCH------HH-----cCCCCEEEEccCcc
Confidence 4678889999999999998843221 12 34568999988754
No 201
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.80 E-value=0.049 Score=48.16 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----C-CC--CCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----G-VP--TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-----g-~~--~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|++++..|.+.|. +|+++||+.++++.+.+. . .. ...+..+.++++|+||-|+|..
T Consensus 138 aaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 138 AGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 47889999999997 799999999999888653 1 11 1234455678899999999865
No 202
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.76 E-value=3.3 Score=38.06 Aligned_cols=267 Identities=14% Similarity=0.148 Sum_probs=140.8
Q ss_pred HHHHHHHhCCC-eEEEEcCChhhHHHHHhC---------------------CC----CCCCCHHHHhhcCCEEEEecCCh
Q 022237 4 RMASNLMKAGY-KMAVHDVNCNVMKMFSDM---------------------GV----PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 4 ~la~~l~~~G~-~V~~~dr~~~~~~~~~~~---------------------g~----~~~~~~~e~~~~adiVii~vp~~ 57 (300)
-+|..|.+.+. +|=+.+|...+.+.+-+. |- ....+.+++..+=|.+|+|||.+
T Consensus 15 QLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~g~WdtlILavtaD 94 (429)
T PF10100_consen 15 QLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIEGEWDTLILAVTAD 94 (429)
T ss_pred HHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhcccccEEEEEechH
Confidence 35666666554 588889987776655331 10 12345566667889999999998
Q ss_pred hhhhhhhcCCC-CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhh----hhhccCCCCCceEEEeccC-CChHhhhc
Q 022237 58 SHVLDVYNGPN-GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI----LKEKKDSWENPVMLDAPVS-GGVLAAEA 131 (300)
Q Consensus 58 ~~~~~v~~~~~-~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~pv~-g~~~~~~~ 131 (300)
+-.+|+.++. ..+.. .+ ++|+-..|.... .-+...+.+.+ +.+-..+....++++.-.. .-...+.+
T Consensus 95 -AY~~VL~ql~~~~L~~---vk-~iVLvSPtfGS~--~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~~vlt~~vK 167 (429)
T PF10100_consen 95 -AYLDVLQQLPWEVLKR---VK-SIVLVSPTFGSH--LLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPNRVLTTAVK 167 (429)
T ss_pred -HHHHHHHhcCHHHHhh---CC-EEEEECcccchH--HHHHHHHHhcCCCceEEEeecccccceeccCCCcceehhhhhh
Confidence 7788988763 23332 12 444443343322 12233333210 0000000011222222100 00111222
Q ss_pred CceEEEecc---CHHHHHHHHHHHHhcCCCeEeeCCccHHHH-----------------HH-------------------
Q 022237 132 GTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAA-----------------AK------------------- 172 (300)
Q Consensus 132 g~~~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~-----------------~k------------------- 172 (300)
. .+++|. +....+++..+++.+|-.+..+..+=.|+. ++
T Consensus 168 ~--kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEG 245 (429)
T PF10100_consen 168 K--KIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEG 245 (429)
T ss_pred c--eEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCC
Confidence 2 344543 456778999999999965555544222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CC---ccc---cccCCCCCCccc--------------C--
Q 022237 173 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-AR---CWS---SDSYNPVPGVME--------------G-- 229 (300)
Q Consensus 173 ~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~---s~~---~~~~~~~~~~~~--------------~-- 229 (300)
-+...++.-+.....|.+.+..+.|+++--+++.++... .. +.. -+.+...+...+ .
T Consensus 246 PIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVRYtsiLIDPFS 325 (429)
T PF10100_consen 246 PITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVRYTSILIDPFS 325 (429)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHHhhhheeCCCC
Confidence 122233344567889999999999999988888888641 00 000 011111111000 0
Q ss_pred --CCCCCCCCC--------------Ccchh----hHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 022237 230 --VPASRNYGG--------------GFASK----LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 230 --~~~~~~~~~--------------~~~~~----~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
.-..+-|+. -+.+. +-.+-+..+..+++.+|+++|..+...+.|+....+
T Consensus 326 ~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~~ 395 (429)
T PF10100_consen 326 EPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLSQ 395 (429)
T ss_pred CCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 000111111 11111 223347899999999999999999999998887763
No 203
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=94.75 E-value=0.49 Score=42.44 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=49.4
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCCh-hhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~-~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||...++.+.++ ++++. +||+++ +++.. ..+.....+..+...+.|+|++|+|+......+.. .+.
T Consensus 14 IGr~~a~al~~~pd~ELVgV~dr~~~~~~~~--~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~----~L~----- 82 (324)
T TIGR01921 14 LGRSVEKAIQQQPDMELVGVFSRRGAETLDT--ETPVYAVADDEKHLDDVDVLILCMGSATDIPEQAP----YFA----- 82 (324)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh--cCCccccCCHHHhccCCCEEEEcCCCccCHHHHHH----HHH-----
Confidence 578888888765 67876 579995 44331 22444445667777899999999998765544432 232
Q ss_pred CCeEEEEcCC
Q 022237 78 RPQLLIDSST 87 (300)
Q Consensus 78 ~~~ivid~st 87 (300)
.|.-+|++..
T Consensus 83 aG~NVV~s~~ 92 (324)
T TIGR01921 83 QFANTVDSFD 92 (324)
T ss_pred cCCCEEECCC
Confidence 2356776543
No 204
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.12 Score=45.64 Aligned_cols=41 Identities=5% Similarity=0.118 Sum_probs=29.6
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++|||||.+++.+.-+. .+. .++|.+|||+++..
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~------~~~-----ik~gavVIDvGin~ 233 (297)
T PRK14186 193 QDLASITREADILVAAAGRPNLIG------AEM-----VKPGAVVVDVGIHR 233 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC------HHH-----cCCCCEEEEecccc
Confidence 467888999999999999884322 112 34568999987643
No 205
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.66 E-value=0.13 Score=45.21 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=29.7
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++|||||.+++.+.-+. .+. .++|.+|||.++..
T Consensus 190 ~~l~~~~~~ADIvIsAvGkp~~i~------~~~-----vk~GavVIDVGin~ 230 (287)
T PRK14173 190 QDLPAVTRRADVLVVAVGRPHLIT------PEM-----VRPGAVVVDVGINR 230 (287)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC------HHH-----cCCCCEEEEccCcc
Confidence 467888999999999998883322 122 34568999988643
No 206
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.63 E-value=0.13 Score=45.15 Aligned_cols=40 Identities=8% Similarity=0.120 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++|||||.+++.+.-+.. +. .++|.+|||.+..
T Consensus 191 ~~l~~~~~~ADIvI~AvG~p~~i~~------~~-----vk~GavVIDvGin 230 (282)
T PRK14169 191 RNLKQLTKEADILVVAVGVPHFIGA------DA-----VKPGAVVIDVGIS 230 (282)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH------HH-----cCCCcEEEEeecc
Confidence 4678889999999999998843321 12 3456899998763
No 207
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.63 E-value=0.14 Score=44.92 Aligned_cols=41 Identities=7% Similarity=0.157 Sum_probs=30.1
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+..++||+||.+++.+.-+. .+. .++|.+|||.++..
T Consensus 194 ~~l~~~~~~ADIvIsAvGk~~~i~------~~~-----ik~gavVIDvGin~ 234 (284)
T PRK14177 194 QNLPSIVRQADIIVGAVGKPEFIK------ADW-----ISEGAVLLDAGYNP 234 (284)
T ss_pred CCHHHHHhhCCEEEEeCCCcCccC------HHH-----cCCCCEEEEecCcc
Confidence 467788999999999999884332 112 34668999988754
No 208
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.59 E-value=0.13 Score=45.41 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++||+||.++..+.-+. .+. .++|.+|||.+...
T Consensus 202 ~nl~~~~~~ADIvv~AvGk~~~i~------~~~-----vk~gavVIDvGin~ 242 (299)
T PLN02516 202 PDPESIVREADIVIAAAGQAMMIK------GDW-----IKPGAAVIDVGTNA 242 (299)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccC------HHH-----cCCCCEEEEeeccc
Confidence 467888999999999998873222 112 34668999988643
No 209
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.52 E-value=0.099 Score=45.61 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=40.8
Q ss_pred ChHHHHHHHHhCC----CeEEEEcCChhhHHHHHhC-----------CCCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAG----YKMAVHDVNCNVMKMFSDM-----------GVPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G----~~V~~~dr~~~~~~~~~~~-----------g~~~~~~~~e~~~~adiVii~v 54 (300)
||..++..|+..| .+|.++|+++++++..... .+..++++.+++++||+||++.
T Consensus 10 vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 10 VGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 6889999999988 6899999998765433221 1223456688999999999966
No 210
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.50 E-value=0.062 Score=48.02 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC--------C--CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G--VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~~~~~--------g--~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|+++|..|+..| ++|.++|+++++++.+... + ........+.+++||+||+++..+
T Consensus 11 vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 11 VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 5899999999999 6899999999887655332 1 112223345578999999999764
No 211
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.50 E-value=0.05 Score=44.23 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=42.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~~~e~~~~adiVii~vp~ 56 (300)
+|..+++.|.+.||+|++..|++++.+. ..++. ...+..++++++|.||.+++.
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred HHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 4889999999999999999999998887 33321 112346778899999999974
No 212
>PRK06199 ornithine cyclodeaminase; Validated
Probab=94.49 E-value=0.041 Score=50.63 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=35.1
Q ss_pred eEEEEcCChhhHHHHHhC------C---CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 15 KMAVHDVNCNVMKMFSDM------G---VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~~------g---~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.+|||++++++++.+. + +..+.++++++++||||+.|++..
T Consensus 183 ~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 183 TIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred EEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 799999999998876542 2 335689999999999999999764
No 213
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.46 E-value=0.15 Score=44.73 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=29.7
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+..++|||||.+++.+.-+.. +. .++|.+|||++...
T Consensus 192 ~nl~~~~~~ADIvIsAvGkp~~i~~------~~-----vk~GavVIDvGin~ 232 (282)
T PRK14166 192 KDLSLYTRQADLIIVAAGCVNLLRS------DM-----VKEGVIVVDVGINR 232 (282)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccCH------HH-----cCCCCEEEEecccc
Confidence 4678889999999999998843321 12 34568999987643
No 214
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.46 E-value=0.071 Score=51.78 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=47.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHH---H-HhhcCCEEEEecCChhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---E-VAEASDVVITMLPSSSHVLDV 63 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---e-~~~~adiVii~vp~~~~~~~v 63 (300)
+|+.+++.|.++|++|+++|.|+++++++.+.|... ..+++ + -++++|.++++++++.....+
T Consensus 428 ~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~i 498 (558)
T PRK10669 428 VGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEI 498 (558)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHH
Confidence 488999999999999999999999999998876432 12222 1 146899999999887554333
No 215
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.42 E-value=0.15 Score=44.71 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=29.1
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+..++||+||.+++.+.-+.. +. .++|.+|||.++.
T Consensus 193 ~dl~~~~k~ADIvIsAvGkp~~i~~------~~-----vk~gavVIDvGin 232 (282)
T PRK14180 193 TDLKSHTTKADILIVAVGKPNFITA------DM-----VKEGAVVIDVGIN 232 (282)
T ss_pred CCHHHHhhhcCEEEEccCCcCcCCH------HH-----cCCCcEEEEeccc
Confidence 4677889999999999998843321 12 3456899998763
No 216
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.42 E-value=0.16 Score=44.56 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=29.5
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++||+||.+++.+.-+. .+. .++|.+|||.+...
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~------~~~-----ik~gavVIDvGin~ 233 (278)
T PRK14172 193 KNLKEVCKKADILVVAIGRPKFID------EEY-----VKEGAIVIDVGTSS 233 (278)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccC------HHH-----cCCCcEEEEeeccc
Confidence 467888999999999999884322 112 34568999986543
No 217
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=94.42 E-value=0.0019 Score=51.27 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHhcC----CCccccccCCCCCCcccCCCCCCCCC---
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS-TLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNYG--- 237 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~-~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~--- 237 (300)
|....+++..|+..+.+..++.|+..+++..|-+++ +++.....+. ..+..++++..+..+.++. ..++
T Consensus 21 Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~---~~~~~~~ 97 (149)
T PF07479_consen 21 GIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGG---KSIEEAE 97 (149)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTT---S-HHHHH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccC---CCHHHHH
Confidence 555667778999999999999999999999999888 5544322221 1111122222111111110 0010
Q ss_pred ---CCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022237 238 ---GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 274 (300)
Q Consensus 238 ---~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~ 274 (300)
..-...+....++.+.+++++.++++|++.++++++.
T Consensus 98 ~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~ 137 (149)
T PF07479_consen 98 KEMLGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILY 137 (149)
T ss_dssp HHHTTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHH
T ss_pred HhhhhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHc
Confidence 0112345667789999999999999999999999875
No 218
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.36 E-value=0.15 Score=44.83 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=39.0
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.+++.-|.+.|..|++++. .+.++.+.+++||+||.+++.+.-+. .+. .++|.+
T Consensus 171 G~Pla~lL~~~~atVt~chs--------------~t~~l~~~~~~ADIvI~AvG~p~~i~------~~~-----ik~gav 225 (284)
T PRK14190 171 GKPVGQLLLNENATVTYCHS--------------KTKNLAELTKQADILIVAVGKPKLIT------ADM-----VKEGAV 225 (284)
T ss_pred HHHHHHHHHHCCCEEEEEeC--------------CchhHHHHHHhCCEEEEecCCCCcCC------HHH-----cCCCCE
Confidence 45555555555555554431 12467788999999999998874221 112 345689
Q ss_pred EEEcCCC
Q 022237 82 LIDSSTI 88 (300)
Q Consensus 82 vid~st~ 88 (300)
|||.+..
T Consensus 226 VIDvGi~ 232 (284)
T PRK14190 226 VIDVGVN 232 (284)
T ss_pred EEEeecc
Confidence 9998764
No 219
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.36 E-value=0.48 Score=43.00 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=60.7
Q ss_pred ChHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCCh----hhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS----SHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~----~~~~~v~~~~~~~l~ 72 (300)
||...+..+.+. ++++. ++|+++++++++.+. |+...++.++.+++.|++++++|+. ...+-+.. .++
T Consensus 13 ~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~----aL~ 88 (343)
T TIGR01761 13 FGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARA----LLA 88 (343)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHH----HHh
Confidence 455666777664 46655 679999999888765 7777889999999899999998652 22221211 222
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
. +.+++++ .-....+++++.+..++
T Consensus 89 a----GkHVL~E-KPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 89 R----GIHVLQE-HPLHPRDIQDLLRLAER 113 (343)
T ss_pred C----CCeEEEc-CCCCHHHHHHHHHHHHH
Confidence 1 1134443 44446777887777765
No 220
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=94.33 E-value=0.052 Score=48.74 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH----HhC-------C-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF----SDM-------G-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~----~~~-------g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||.+||..+..+|++++..|.|..-++.- ... + .... ....-++++|.|+-+|-.
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~-~Dy~~~~~~dmvieav~e 79 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVET-LDYTGFANADMVIEAVFE 79 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccc-cccccccccceeccchhh
Confidence 99999999999999999999996554311 110 1 1111 112346799999888866
Q ss_pred hhhhh-hhhcCCCCc
Q 022237 57 SSHVL-DVYNGPNGL 70 (300)
Q Consensus 57 ~~~~~-~v~~~~~~~ 70 (300)
+-.++ +++.+++.+
T Consensus 80 dl~Lk~~l~~~le~v 94 (380)
T KOG1683|consen 80 DLELKHELFKSLEKV 94 (380)
T ss_pred hHHHHHHHHHHHHhh
Confidence 64443 344444333
No 221
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.25 E-value=0.17 Score=44.66 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=29.1
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++|||||.+++.+.-+.. +. .++|.+|||.+..
T Consensus 195 ~~l~~~~~~ADIvVsAvGkp~~i~~------~~-----ik~gaiVIDVGin 234 (294)
T PRK14187 195 RDLADYCSKADILVAAVGIPNFVKY------SW-----IKKGAIVIDVGIN 234 (294)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH------HH-----cCCCCEEEEeccc
Confidence 4678889999999999998843321 12 3456899997753
No 222
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.24 E-value=0.18 Score=44.28 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=30.2
Q ss_pred CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 37 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 37 ~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
+.++.+.+++||+||.+++.+.-+. .+. .++|.+|||++...
T Consensus 194 T~~l~~~~k~ADIvV~AvGkp~~i~------~~~-----ik~GavVIDvGin~ 235 (284)
T PRK14193 194 TRDLAAHTRRADIIVAAAGVAHLVT------ADM-----VKPGAAVLDVGVSR 235 (284)
T ss_pred CCCHHHHHHhCCEEEEecCCcCccC------HHH-----cCCCCEEEEccccc
Confidence 3467888999999999999884322 112 34568999987643
No 223
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.22 E-value=0.15 Score=43.53 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=53.8
Q ss_pred EEEEcCChhhHHHHHhC-CCCCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC---CH
Q 022237 16 MAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI---DP 90 (300)
Q Consensus 16 V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~---~p 90 (300)
+.+||+++++++.+.+. |...+.+.++.+ .+.|+|++|+|.. ...+...+ .++. +.++++ .|.. ..
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~-~H~e~a~~---aL~a----GkhVl~-~s~gAlad~ 75 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQE-AVKEYAEK---ILKN----GKDLLI-MSVGALADR 75 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChH-HHHHHHHH---HHHC----CCCEEE-ECCcccCCH
Confidence 55899999999888664 677788899886 5899999999998 44444432 3332 224555 4543 45
Q ss_pred HHHHHHHHHHhh
Q 022237 91 QTSRNISAAVSN 102 (300)
Q Consensus 91 ~~~~~~~~~~~~ 102 (300)
...+++.+..++
T Consensus 76 e~~~~l~~aA~~ 87 (229)
T TIGR03855 76 ELRERLREVARS 87 (229)
T ss_pred HHHHHHHHHHHh
Confidence 667777777665
No 224
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=94.18 E-value=0.053 Score=50.74 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=36.9
Q ss_pred HhCCCeEEEEcCChhhHHHHHhC--------C----CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 10 MKAGYKMAVHDVNCNVMKMFSDM--------G----VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 10 ~~~G~~V~~~dr~~~~~~~~~~~--------g----~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
..+|++|.+||+++++++..... + +..+++..+++++||+||+++|..
T Consensus 26 ~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai~~~ 85 (423)
T cd05297 26 ELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINTIQVG 85 (423)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEeeEec
Confidence 44578999999999887665332 1 234668889999999999999864
No 225
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.11 E-value=0.19 Score=44.09 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++||+||.+++.+.-+. .+. .++|.+|||.++..
T Consensus 192 ~~l~~~~~~ADIvV~AvGkp~~i~------~~~-----vk~gavvIDvGin~ 232 (281)
T PRK14183 192 KDLKAHTKKADIVIVGVGKPNLIT------EDM-----VKEGAIVIDIGINR 232 (281)
T ss_pred cCHHHHHhhCCEEEEecCcccccC------HHH-----cCCCcEEEEeeccc
Confidence 456788999999999998884322 112 34568999988643
No 226
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.08 E-value=0.2 Score=44.05 Aligned_cols=40 Identities=5% Similarity=0.085 Sum_probs=28.9
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++||+||.++..+..+. .+. .++|.+|||.++.
T Consensus 199 ~~l~~~~~~ADIvv~AvG~p~~i~------~~~-----vk~gavVIDvGin 238 (287)
T PRK14176 199 DDLKKYTLDADILVVATGVKHLIK------ADM-----VKEGAVIFDVGIT 238 (287)
T ss_pred CCHHHHHhhCCEEEEccCCccccC------HHH-----cCCCcEEEEeccc
Confidence 467888999999999998874321 112 3456899998864
No 227
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.01 E-value=0.21 Score=43.98 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=29.0
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++|||||.++..+..+.. +. .++|.+|||++..
T Consensus 194 ~~L~~~~~~ADIvV~AvGkp~~i~~------~~-----vk~GavVIDvGin 233 (288)
T PRK14171 194 HNLSSITSKADIVVAAIGSPLKLTA------EY-----FNPESIVIDVGIN 233 (288)
T ss_pred CCHHHHHhhCCEEEEccCCCCccCH------HH-----cCCCCEEEEeecc
Confidence 4678889999999999988843321 12 3456899998753
No 228
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.95 E-value=0.18 Score=38.54 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=55.8
Q ss_pred ChHHHHHHHHh-CCCeEE-EEcCChh-hH----HHH---HhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMK-AGYKMA-VHDVNCN-VM----KMF---SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~-~G~~V~-~~dr~~~-~~----~~~---~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
||+.+++.+.+ .++++. +++++++ .. .++ ...|....++++++++.+|+||-.. .+..+.+.+.. .
T Consensus 12 MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~---~ 87 (124)
T PF01113_consen 12 MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAVYDNLEY---A 87 (124)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHHHHHHHH---H
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHhHHHHHH---H
Confidence 89999999998 678855 5688872 11 122 1336677789999999999999988 66566666542 2
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 022237 71 LQGGNSVRPQLLIDSSTIDPQTSRNISAAV 100 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~p~~~~~~~~~~ 100 (300)
++. +-.+|+=+|+-.++...++.+..
T Consensus 88 ~~~----g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 88 LKH----GVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp HHH----T-EEEEE-SSSHHHHHHHHHHHT
T ss_pred HhC----CCCEEEECCCCCHHHHHHHHHHh
Confidence 221 22455544445556556665543
No 229
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.94 E-value=0.15 Score=44.62 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=39.9
Q ss_pred CCeEEEEcCChhhHHH---H-HhCCCC------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEE
Q 022237 13 GYKMAVHDVNCNVMKM---F-SDMGVP------TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL 82 (300)
Q Consensus 13 G~~V~~~dr~~~~~~~---~-~~~g~~------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~iv 82 (300)
|.+|.+.+|+...-.. + ...|+. .+.++.+.+++||+||.+++.+.- +. .+.+ ++|.+|
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~l----v~--~~~v-----k~GavV 220 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGF----IT--PDMV-----KPGATV 220 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccc----cC--HHHc-----CCCcEE
Confidence 4467777777544333 2 223332 124577889999999999986622 21 1122 456899
Q ss_pred EEcCCC
Q 022237 83 IDSSTI 88 (300)
Q Consensus 83 id~st~ 88 (300)
||.+..
T Consensus 221 IDVgi~ 226 (279)
T PRK14178 221 IDVGIN 226 (279)
T ss_pred EEeecc
Confidence 998864
No 230
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.93 E-value=0.099 Score=46.16 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=42.3
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-C----CCCCC---CHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G----VPTKE---TPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g----~~~~~---~~~e~~~~adiVii~vp~~~ 58 (300)
||++++..|.+.|. +|+++||++++++.+.+. + +.... +..+.+.++|+||-|+|...
T Consensus 136 aarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 136 TSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 57889999999997 699999999999888653 1 11111 12244577899999988763
No 231
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.83 E-value=0.23 Score=43.63 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=28.8
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++||+||.+++.+.-+. .+. .++|.+|||.+..
T Consensus 192 ~nl~~~~~~ADIvI~AvGk~~~i~------~~~-----ik~gaiVIDvGin 231 (282)
T PRK14182 192 ADLAGEVGRADILVAAIGKAELVK------GAW-----VKEGAVVIDVGMN 231 (282)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC------HHH-----cCCCCEEEEeece
Confidence 467788999999999998873322 112 3456899998764
No 232
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.82 E-value=0.22 Score=44.84 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+..++|||||.+++.+.-+.. +. .++|.+|||.+..
T Consensus 249 ~nl~~~~~~ADIvIsAvGkp~~v~~------d~-----vk~GavVIDVGin 288 (345)
T PLN02897 249 KDPEQITRKADIVIAAAGIPNLVRG------SW-----LKPGAVVIDVGTT 288 (345)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH------HH-----cCCCCEEEEcccc
Confidence 4678889999999999998843321 12 3466899998764
No 233
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.81 E-value=0.12 Score=46.34 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=40.7
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHH----HHhCC-----CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDMG-----VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~----~~~~g-----~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.++|..|+..| .+|.++|+++++++. +.... .....+..+.+++||+||++++.+
T Consensus 11 VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 11 VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 4899999999999 589999999877653 32211 011112346689999999999865
No 234
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.80 E-value=0.3 Score=36.49 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=47.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHHH----HhhcCCEEEEecCChhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPFE----VAEASDVVITMLPSSSHVLDV 63 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~e----~~~~adiVii~vp~~~~~~~v 63 (300)
+|..+++.|.+.+.+|++.|++++..+.+.+.|... ..++.. -+++++.|+++++++..-..+
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~ 79 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI 79 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH
Confidence 478899999997779999999999999999887532 122221 246899999999888543333
No 235
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=93.79 E-value=0.062 Score=50.04 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=47.1
Q ss_pred ChHHHHHHHHhCCCeEEEE------cCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVH------DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~------dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
+|.+.|.+|...|++|++- |.+....+.+.+.|... .+..|+++.||+|++.+|+. .-..+..
T Consensus 47 qG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v~~ 115 (487)
T PRK05225 47 QGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDVVR 115 (487)
T ss_pred HHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHHHH
Confidence 3777888888899998843 33345566666678755 68999999999999999998 4444553
No 236
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.64 E-value=0.25 Score=44.71 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++|||||.+++.+.-+.. +. .++|.+|||.+..
T Consensus 266 ~nl~~~~r~ADIVIsAvGkp~~i~~------d~-----vK~GAvVIDVGIn 305 (364)
T PLN02616 266 KNPEEITREADIIISAVGQPNMVRG------SW-----IKPGAVVIDVGIN 305 (364)
T ss_pred CCHHHHHhhCCEEEEcCCCcCcCCH------HH-----cCCCCEEEecccc
Confidence 4678889999999999988843321 12 3466899997753
No 237
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.47 E-value=0.22 Score=43.78 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=27.6
Q ss_pred CHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 39 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 39 ~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
++.+.+++||+||.+++.+.-+. .+. .++|.+|||.+..
T Consensus 193 ~l~~~~~~ADIvV~AvG~p~~i~------~~~-----vk~GavVIDvGi~ 231 (285)
T PRK14191 193 DLSFYTQNADIVCVGVGKPDLIK------ASM-----VKKGAVVVDIGIN 231 (285)
T ss_pred HHHHHHHhCCEEEEecCCCCcCC------HHH-----cCCCcEEEEeecc
Confidence 45678899999999998883322 112 3456899998763
No 238
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.44 E-value=0.3 Score=42.98 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++||+||.+++.+.-+. .+. .++|.+|||.+..
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~i~------~~~-----ik~GavVIDvGin 231 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLFIK------EEM-----IAEKAVIVDVGTS 231 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC------HHH-----cCCCCEEEEeccc
Confidence 467888999999999998883322 112 3466899998764
No 239
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=93.36 E-value=0.45 Score=40.14 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=41.7
Q ss_pred Ce-EEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 14 YK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 14 ~~-V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
++ +.+|||+.+++..+.+. +.+..++++|.+++.|+++-|-. ++++++...+
T Consensus 26 ~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~~~~ 79 (255)
T COG1712 26 FELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREYVPK 79 (255)
T ss_pred eeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHHhHH
Confidence 44 78999999999888765 55566889999999999999994 4588887643
No 240
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.29 E-value=0.25 Score=45.12 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhh
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
..++..|.+.|.+|.+||.....-....-.+....++++++++++|++++++.++ +++++-
T Consensus 333 ~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~-ef~~~d 393 (414)
T COG1004 333 LDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD-EFRDLD 393 (414)
T ss_pred HHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH-HHhccC
Confidence 3578899999999999997643322222124677889999999999999999887 666653
No 241
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=93.29 E-value=0.1 Score=39.52 Aligned_cols=73 Identities=19% Similarity=0.376 Sum_probs=46.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.-+.+.|.++|++|+..|.+.+.+ .|.....++.|.-...|++++++|.. .+.+++.+.... .-+.+
T Consensus 16 g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v~~~~~~------g~~~v 83 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIVDEAAAL------GVKAV 83 (116)
T ss_dssp HHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHHHHHHHH------T-SEE
T ss_pred HHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHH-HHHHHHHHHHHc------CCCEE
Confidence 5667889999999999998776433 35667788888447999999999876 666777543221 12257
Q ss_pred EEEcC
Q 022237 82 LIDSS 86 (300)
Q Consensus 82 vid~s 86 (300)
|+..+
T Consensus 84 ~~~~g 88 (116)
T PF13380_consen 84 WLQPG 88 (116)
T ss_dssp EE-TT
T ss_pred EEEcc
Confidence 77655
No 242
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.11 E-value=0.23 Score=48.95 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=49.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHH---H-HhhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---E-VAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---e-~~~~adiVii~vp~~~~~~~v~ 64 (300)
+|..+++.|.++|+++++.|.|+++++.+.+.|... .++++ + -++++|.+++++++++....+.
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~ 482 (621)
T PRK03562 411 FGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQLV 482 (621)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHH
Confidence 488899999999999999999999999998887532 12222 1 2458999999998876544444
No 243
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.06 E-value=0.49 Score=41.35 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+..+++|+|+.++..+.-++ .+. .++|.++||.+...
T Consensus 191 ~~l~~~~k~ADIvv~AvG~p~~i~------~d~-----vk~gavVIDVGinr 231 (283)
T COG0190 191 KDLASITKNADIVVVAVGKPHFIK------ADM-----VKPGAVVIDVGINR 231 (283)
T ss_pred CCHHHHhhhCCEEEEecCCccccc------ccc-----ccCCCEEEecCCcc
Confidence 467788999999999998873332 122 34568999977643
No 244
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=93.02 E-value=0.3 Score=42.13 Aligned_cols=43 Identities=7% Similarity=0.057 Sum_probs=36.2
Q ss_pred eEEEEcCChhhHHHHHhC----------CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 15 KMAVHDVNCNVMKMFSDM----------GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~~----------g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.+|+|+++.+.++.+. .+..+.+..+++..+|||+.|++..
T Consensus 166 eVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlst 218 (333)
T KOG3007|consen 166 EVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLST 218 (333)
T ss_pred EEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccC
Confidence 799999999998888763 2456778899999999999999775
No 245
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.98 E-value=0.29 Score=44.03 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=37.6
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHH----HhC----CC--C--CCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMF----SDM----GV--P--TKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~----~~~----g~--~--~~~~~~e~~~~adiVii~v 54 (300)
||.+++..++..| .++.++|+++++++.. ... +. . ...+.+ ++++||+||++.
T Consensus 16 vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 16 IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 6889999999888 5899999998754321 111 11 1 224444 789999999999
No 246
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.91 E-value=0.42 Score=42.34 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=28.9
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++||+||.++..+.-+. .+. .++|.+|||.+..
T Consensus 200 ~~l~~~~~~ADIvVsAvGkp~~i~------~~~-----ik~gavVIDvGin 239 (297)
T PRK14168 200 KNLARHCQRADILIVAAGVPNLVK------PEW-----IKPGATVIDVGVN 239 (297)
T ss_pred cCHHHHHhhCCEEEEecCCcCccC------HHH-----cCCCCEEEecCCC
Confidence 467888999999999998874322 112 3466899998763
No 247
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.79 E-value=0.17 Score=47.73 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-CCCCC-------CCCHHHH-hhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT-------KETPFEV-AEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~-------~~~~~e~-~~~adiVii~vp~~~ 58 (300)
+|..+++.|.+.|++|+++|+++++.+.+.+ .+... ...+.++ +.++|.||++++++.
T Consensus 11 ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 11 VGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 5889999999999999999999999988876 33211 1123344 678999999998873
No 248
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.79 E-value=0.21 Score=44.69 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.++||+|++.+|++++...+...++. ...+..++++++|+||-+++
T Consensus 12 iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 12 LGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred HHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 48999999999999999999998776555444432 12245677889999998864
No 249
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.53 E-value=0.36 Score=42.60 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=42.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.+++..|.+.|..|+++++. +.++.+.++++|+||.|++.+.- +. .+. .+++.+
T Consensus 172 Gkpia~~L~~~gatVtv~~~~--------------t~~L~~~~~~aDIvI~AtG~~~~----v~--~~~-----lk~gav 226 (283)
T PRK14192 172 GKPMAMMLLNANATVTICHSR--------------TQNLPELVKQADIIVGAVGKPEL----IK--KDW-----IKQGAV 226 (283)
T ss_pred HHHHHHHHHhCCCEEEEEeCC--------------chhHHHHhccCCEEEEccCCCCc----CC--HHH-----cCCCCE
Confidence 678888888888888888763 23455667899999999976531 11 112 245689
Q ss_pred EEEcCCC
Q 022237 82 LIDSSTI 88 (300)
Q Consensus 82 vid~st~ 88 (300)
|+|+...
T Consensus 227 ViDvg~n 233 (283)
T PRK14192 227 VVDAGFH 233 (283)
T ss_pred EEEEEEe
Confidence 9997754
No 250
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=92.49 E-value=0.87 Score=40.97 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=59.9
Q ss_pred HHHHHHHhCCC--e-EEEEcCChhhHHHHHhC-CC-CCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 4 RMASNLMKAGY--K-MAVHDVNCNVMKMFSDM-GV-PTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 4 ~la~~l~~~G~--~-V~~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
..+..+.+.+. . |.++|+++++++.+.+. |. ...++.++.+++ .|+|+||+|+....+-+... +..
T Consensus 18 ~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~A----L~a--- 90 (342)
T COG0673 18 AHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAA----LEA--- 90 (342)
T ss_pred HhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHH----Hhc---
Confidence 34556666553 3 56789999999888765 65 377899999875 59999999999766555432 221
Q ss_pred CCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+.+++++-= +....+++++.+..++
T Consensus 91 -GkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 91 -GKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred -CCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 113444311 3556677777776654
No 251
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.43 E-value=0.5 Score=41.72 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=29.8
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++|||||.+++.+.-+. .+. .++|.+|||.+...
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~~i~------~~~-----vk~gavVIDvGin~ 236 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPEFVK------ADM-----VKEGAVVIDVGTTR 236 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC------HHH-----cCCCCEEEEecCcc
Confidence 467888999999999999884332 122 34568999987643
No 252
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.40 E-value=0.31 Score=44.08 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=43.5
Q ss_pred ChHHHHHHHHhC-C-CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~-G-~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||+.+++.|... | .++++++|+++++..+..+ +.....+..+++.++|+|+.+...+
T Consensus 167 IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 167 IGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP 226 (340)
T ss_pred HHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC
Confidence 689999999854 5 5899999999988887654 2122236778899999999988554
No 253
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.40 E-value=0.39 Score=34.05 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhh
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~ 60 (300)
||.+++..|.+. +.+|.+||| |++|.|++.+..+
T Consensus 34 ~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~ 68 (86)
T cd05191 34 VGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPV 68 (86)
T ss_pred HHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCc
Confidence 477888888887 568888988 9999999877444
No 254
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=92.32 E-value=0.46 Score=41.96 Aligned_cols=91 Identities=12% Similarity=0.202 Sum_probs=61.2
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
|..+-.++...|++ .+|..||.+ .+++ .|.+...+..|+-+. .|++++++|.+ .+.+++.+. .+. .-+
T Consensus 19 ~~~~~~~~~~~g~~-~v~~V~p~~~~~~v--~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l~e~---~~~--Gvk 89 (286)
T TIGR01019 19 GSFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFDSVKEAVEETGANASVIFVPAP-FAADAIFEA---IDA--GIE 89 (286)
T ss_pred HHHHHHHHHhCCCC-EEEEECCCCCccee--cCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHHHHH---HHC--CCC
Confidence 56677788888998 777777763 2222 377888899998776 79999999987 666666543 211 112
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..+|-+++......+++.+..++
T Consensus 90 -~avIis~Gf~e~~~~~l~~~a~~ 112 (286)
T TIGR01019 90 -LIVCITEGIPVHDMLKVKRYMEE 112 (286)
T ss_pred -EEEEECCCCCHHHHHHHHHHHHH
Confidence 46666666665545667776655
No 255
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=92.26 E-value=0.078 Score=40.39 Aligned_cols=80 Identities=21% Similarity=0.174 Sum_probs=46.9
Q ss_pred ChHHHHHHHHhCCC-e-EEEEcCChhhHHHHHhC-----C---CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMKAGY-K-MAVHDVNCNVMKMFSDM-----G---VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~~G~-~-V~~~dr~~~~~~~~~~~-----g---~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
+|+.|.+.|.++-+ + +.++.++.+.-..+... + ........+.+.++|+||+|+|.. ...+.... +
T Consensus 11 vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~~~~~~~~---~ 86 (121)
T PF01118_consen 11 VGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG-ASKELAPK---L 86 (121)
T ss_dssp HHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH-HHHHHHHH---H
T ss_pred HHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh-HHHHHHHH---H
Confidence 47889999988433 4 55667666322222222 1 122222334569999999999887 44555432 2
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
+ ..|..|||.|+..
T Consensus 87 ~-----~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 87 L-----KAGIKVIDLSGDF 100 (121)
T ss_dssp H-----HTTSEEEESSSTT
T ss_pred h-----hCCcEEEeCCHHH
Confidence 2 2347899999854
No 256
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=92.02 E-value=0.49 Score=41.93 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=59.2
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
|+.+.++|.+.|++ .+|=.||.+ .+++ .|.+...+..|+-+. .|+.++++|.+ .+.+++.+. .+. .-+
T Consensus 21 g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l~e~---~~~--gvk 91 (291)
T PRK05678 21 GTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPP-FAADAILEA---IDA--GID 91 (291)
T ss_pred HHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHHHHH---HHC--CCC
Confidence 66778888888887 555444432 1222 377788899998776 89999999987 666666543 221 112
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..+|-+++......+++.+..++
T Consensus 92 -~avI~s~Gf~~~~~~~l~~~a~~ 114 (291)
T PRK05678 92 -LIVCITEGIPVLDMLEVKAYLER 114 (291)
T ss_pred -EEEEECCCCCHHHHHHHHHHHHH
Confidence 45666677665545577776655
No 257
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=91.93 E-value=0.25 Score=42.92 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=42.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhh-cCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~-~adiVii~vp~~ 57 (300)
||++|...|.+.||+|++..|++.+.+..........+..++... .+|+||=-...+
T Consensus 10 IG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~~ 67 (297)
T COG1090 10 IGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGEP 67 (297)
T ss_pred hhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCCc
Confidence 699999999999999999999998887665544333344455555 689888655443
No 258
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.76 E-value=0.34 Score=42.91 Aligned_cols=57 Identities=7% Similarity=0.026 Sum_probs=38.1
Q ss_pred ChHHHHHHHHhCCCe-EEEEcCCh---hhHHHHHhC----CC--CC--C--C---CHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYK-MAVHDVNC---NVMKMFSDM----GV--PT--K--E---TPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~-V~~~dr~~---~~~~~~~~~----g~--~~--~--~---~~~e~~~~adiVii~vp~~ 57 (300)
+|++++..|++.|.+ |+++||++ ++++++.+. +. .. . . +..+.++.+|+||-|+|-.
T Consensus 137 agrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~G 210 (289)
T PRK12548 137 AATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVG 210 (289)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCC
Confidence 378899999999986 99999997 666555431 11 11 1 1 1223456789999988765
No 259
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.66 E-value=0.53 Score=41.45 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=28.0
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
.++.+.+++||+||.+++.+.-+.. +. .++|.+|||.+.
T Consensus 196 ~~l~~~~~~ADIVI~AvG~p~li~~------~~-----vk~GavVIDVGi 234 (286)
T PRK14184 196 PDLAEECREADFLFVAIGRPRFVTA------DM-----VKPGAVVVDVGI 234 (286)
T ss_pred hhHHHHHHhCCEEEEecCCCCcCCH------HH-----cCCCCEEEEeee
Confidence 3577889999999999988743221 12 245689999775
No 260
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.63 E-value=0.69 Score=40.98 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++|||||.++..+.-+.. +. .++|.+|||.+...
T Consensus 196 ~~l~~~~~~ADIvIsAvGkp~~i~~------~~-----ik~gaiVIDvGin~ 236 (297)
T PRK14167 196 DDLAAKTRRADIVVAAAGVPELIDG------SM-----LSEGATVIDVGINR 236 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH------HH-----cCCCCEEEEccccc
Confidence 4677889999999999988843221 12 34568999987643
No 261
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.61 E-value=0.4 Score=40.70 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=43.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChh--hHHHHHhCCCCC-------CCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPT-------KETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~--~~~~~~~~g~~~-------~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|.+.+|+|.+.-|++. ..+.+...|+.. ..++.++++++|.||+++|.
T Consensus 10 ~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 10 QGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp HHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 489999999999999999988864 466777776532 22445678999999999983
No 262
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=91.37 E-value=0.38 Score=42.85 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=41.2
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC--------C-CCC--CCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G-VPT--KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~~~~~--------g-~~~--~~~~~e~~~~adiVii~vp~~ 57 (300)
+|+++|..|+..| +++.++|++++++...... . ... ..+ .+.+++||+||++...+
T Consensus 9 VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 9 VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAP 77 (300)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCC
Confidence 4889999999988 5899999999876554332 1 111 233 56889999999999754
No 263
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=91.28 E-value=0.29 Score=45.19 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=42.7
Q ss_pred ChHHHHHHHHhCC-C-eEEEEcCChhhHHHHHhC--C---------CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG-Y-KMAVHDVNCNVMKMFSDM--G---------VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G-~-~V~~~dr~~~~~~~~~~~--g---------~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||+.+++.|++.+ + +|++.||+.++++++.+. + +....++.+.++++|+||-|+|..
T Consensus 9 vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 9 VGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp HHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 5899999999886 4 899999999999888753 1 111123456788999999999776
No 264
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.27 E-value=0.51 Score=41.98 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCC
Q 022237 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 4 ~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
-+++.|.+.|++|.++.-+.+. ....|+....+.+++++++|+|+..+|.
T Consensus 16 ~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 16 ELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred HHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCcc
Confidence 4788999999999987544321 1234777777888999999999999885
No 265
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.19 E-value=0.55 Score=44.84 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=39.9
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC--CC---------------C----------HHHHhhcCCEEEEec
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--KE---------------T----------PFEVAEASDVVITML 54 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--~~---------------~----------~~e~~~~adiVii~v 54 (300)
|...+..+...|..|+++|+++++.+.+...|... .+ + ..+.++++|+||.|+
T Consensus 176 Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~Ta 255 (511)
T TIGR00561 176 GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTA 255 (511)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 66667777788999999999999988887766542 00 1 234567899999999
No 266
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=91.10 E-value=1.3 Score=38.81 Aligned_cols=93 Identities=15% Similarity=0.297 Sum_probs=58.5
Q ss_pred ChHHHHHHHHh-CCCeEE-EEcCC-hhhH----HHHHh---CCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMK-AGYKMA-VHDVN-CNVM----KMFSD---MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~-~G~~V~-~~dr~-~~~~----~~~~~---~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
||..+++.+.+ .++++. ++||+ ++.. ..+.. .|+..+.++++....+|+||.++|.. ...+++.. .
T Consensus 13 MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~-~~~~~~~~---a 88 (266)
T TIGR00036 13 MGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPE-GVLNHLKF---A 88 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChH-HHHHHHHH---H
Confidence 78999999886 467755 57854 3321 12211 24555678887755799999999776 55555432 2
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 71 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
++. +-.+|+-+++.++...+++.+..+
T Consensus 89 l~~----g~~vVigttg~~~e~~~~l~~aA~ 115 (266)
T TIGR00036 89 LEH----GVRLVVGTTGFSEEDKQELADLAE 115 (266)
T ss_pred HHC----CCCEEEECCCCCHHHHHHHHHHHh
Confidence 321 225777666777777777766654
No 267
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=90.91 E-value=3.8 Score=34.48 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 022237 33 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 100 (300)
Q Consensus 33 g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~ 100 (300)
|...+++.+|+++++|+|+.=+|...--.+++.. +.+. .++|.||.+.+|+.-....++-+..
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikk---fidd--ipegaivthactipttkf~kifed~ 188 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKK---FIDD--IPEGAIVTHACTIPTTKFKKIFEDM 188 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHH---HHhc--CCCCceEeeecccchHHHHHHHHHh
Confidence 4566778899999999999999987433444432 3332 5678999999998866555554444
No 268
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=90.88 E-value=0.47 Score=42.78 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=57.3
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|..+|+++...|.+|++++.+|-++-+..=.|.+. ...+|++..+|++|+|+... +|+.. +.+.. .+.+.|
T Consensus 221 GrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V-~~m~~Aa~~gDifiT~TGnk----dVi~~--eh~~~--MkDgaI 291 (420)
T COG0499 221 GRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKTGDIFVTATGNK----DVIRK--EHFEK--MKDGAI 291 (420)
T ss_pred chHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEE-EEhHHhhhcCCEEEEccCCc----CccCH--HHHHh--ccCCeE
Confidence 78999999999999999999999887776668766 46789999999999999765 23321 12222 345667
Q ss_pred EEEcC
Q 022237 82 LIDSS 86 (300)
Q Consensus 82 vid~s 86 (300)
+.+.+
T Consensus 292 l~N~G 296 (420)
T COG0499 292 LANAG 296 (420)
T ss_pred Eeccc
Confidence 77755
No 269
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=90.67 E-value=0.45 Score=43.33 Aligned_cols=80 Identities=23% Similarity=0.182 Sum_probs=47.2
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHh-C----CC---CC-CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M----GV---PT-KETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~-~----g~---~~-~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
+|..+.+.|.+. ++++. ++++++..-+.+.+ . +. .. ..+.++..+++|+||+|+|+. ...++...
T Consensus 12 vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-~s~~~~~~--- 87 (346)
T TIGR01850 12 TGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-VSAELAPE--- 87 (346)
T ss_pred HHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-HHHHHHHH---
Confidence 477888888876 45777 55654422222221 1 11 11 114556656899999999998 44445432
Q ss_pred cccCCCCCCCeEEEEcCCCC
Q 022237 70 LLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~st~~ 89 (300)
+. ..|..|||.|+..
T Consensus 88 ~~-----~~G~~VIDlS~~f 102 (346)
T TIGR01850 88 LL-----AAGVKVIDLSADF 102 (346)
T ss_pred HH-----hCCCEEEeCChhh
Confidence 22 2347899999854
No 270
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.48 E-value=0.9 Score=40.25 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=28.0
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++||+||.+++.+.- +. .+. .++|.+|||.+..
T Consensus 198 ~~l~~~~~~ADIvI~Avg~~~l----i~--~~~-----vk~GavVIDVgi~ 237 (295)
T PRK14174 198 KDIPSYTRQADILIAAIGKARF----IT--ADM-----VKPGAVVIDVGIN 237 (295)
T ss_pred hhHHHHHHhCCEEEEecCccCc----cC--HHH-----cCCCCEEEEeecc
Confidence 3568889999999999977622 21 122 2456899998753
No 271
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.42 E-value=1.1 Score=38.21 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=49.1
Q ss_pred ChHHHHHHHHhCCC---eEEEEcCC----hhhH-------HHHHhC-CCC-CCCCHHHHhhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGY---KMAVHDVN----CNVM-------KMFSDM-GVP-TKETPFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~---~V~~~dr~----~~~~-------~~~~~~-g~~-~~~~~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
+|.+++..|.+.|. +++++||+ .++. ..+.+. +.. ...++.++++++|+||-++|...-.++++
T Consensus 36 Ag~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT~~G~~~~~~l 115 (226)
T cd05311 36 AGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVSRPGVVKKEMI 115 (226)
T ss_pred HHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCCCCCCCCHHHH
Confidence 47889999999997 59999999 4543 223222 111 11367788889999999997432112222
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 65 NGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 65 ~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.. + .++.+|.+.++-.
T Consensus 116 ~~----m-----~~~~ivf~lsnP~ 131 (226)
T cd05311 116 KK----M-----AKDPIVFALANPV 131 (226)
T ss_pred Hh----h-----CCCCEEEEeCCCC
Confidence 21 1 1235777888544
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.40 E-value=0.89 Score=41.01 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=41.3
Q ss_pred HHHHHHHh-CCCeEEEEcCChhhHHHHHhCCCCCC-----CCHHHHh-hcCCEEEEecCChhhhhhhh
Q 022237 4 RMASNLMK-AGYKMAVHDVNCNVMKMFSDMGVPTK-----ETPFEVA-EASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 4 ~la~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~~~e~~-~~adiVii~vp~~~~~~~v~ 64 (300)
.+|.-+++ .|.+|+++||++++.+.+.+.|+... .+..+.+ +..|+|+.++| +..+.+-+
T Consensus 180 h~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l 246 (339)
T COG1064 180 HMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSL 246 (339)
T ss_pred HHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHH
Confidence 35555665 79999999999999999988876421 1122222 23888888888 65666554
No 273
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=89.86 E-value=0.36 Score=37.87 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=39.7
Q ss_pred hHHHHHHHHhCCC--eEEEEcCChhhHHHHHhC----------CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKAGY--KMAVHDVNCNVMKMFSDM----------GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~----------g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
|.++|..|...+. ++.++|+++++++..... .........+.+++||+|+++...+
T Consensus 13 G~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 13 GSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred HHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 7889999998875 799999998766433221 1223335567788999999988443
No 274
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=89.81 E-value=0.57 Score=41.95 Aligned_cols=54 Identities=11% Similarity=0.133 Sum_probs=40.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh------HHHHHhC---------CCCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV------MKMFSDM---------GVPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~------~~~~~~~---------g~~~~~~~~e~~~~adiVii~v 54 (300)
+|+.+.+.|+++||.|.+.=|+++. +.++... -+....+..+++++||.||=+.
T Consensus 18 Igswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 18 IGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTA 86 (327)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeC
Confidence 5889999999999999999888876 3333211 1334567889999999999754
No 275
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=89.80 E-value=0.77 Score=39.26 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=41.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
+|.++|+.|+++|++|++..|+.++++++..+-. + ..+..+.+=|.+..+++..+.
T Consensus 18 iG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~-------~--~~~~~~~~DVtD~~~~~~~i~ 73 (246)
T COG4221 18 IGEATARALAEAGAKVVLAARREERLEALADEIG-------A--GAALALALDVTDRAAVEAAIE 73 (246)
T ss_pred HHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhc-------c--CceEEEeeccCCHHHHHHHHH
Confidence 5899999999999999999999999999976411 0 244455555667666555554
No 276
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.24 E-value=0.72 Score=35.04 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=29.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~ 35 (300)
+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~ 36 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD 36 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc
Confidence 36677777778899999999999999999888753
No 277
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=89.19 E-value=0.56 Score=37.86 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=50.1
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC--------------------------CHHHHhhcCCEEEEecC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------------------TPFEVAEASDVVITMLP 55 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~--------------------------~~~e~~~~adiVii~vp 55 (300)
|..-++.+...|++|+++|.++++.+.+...+..... .+.+.++.+|+||.+.-
T Consensus 32 g~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~~~~ 111 (168)
T PF01262_consen 32 GQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFIAPADIVIGNGL 111 (168)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHHHH-SEEEEHHH
T ss_pred HHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHHhhCcEEeeecc
Confidence 5566777888999999999999988888776432111 23466788999997552
Q ss_pred -ChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 56 -SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 56 -~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
+......++.+ ..++. .+++.+|+|.|-
T Consensus 112 ~~~~~~P~lvt~--~~~~~--m~~gsvIvDis~ 140 (168)
T PF01262_consen 112 YWGKRAPRLVTE--EMVKS--MKPGSVIVDISC 140 (168)
T ss_dssp BTTSS---SBEH--HHHHT--SSTTEEEEETTG
T ss_pred cCCCCCCEEEEh--HHhhc--cCCCceEEEEEe
Confidence 22122223321 22333 346789999874
No 278
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=89.06 E-value=0.45 Score=41.42 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=29.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|..+|+.|+++||+|++..|+.+++.++.++
T Consensus 18 IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 18 IGAELAKQLARRGYNLILVARREDKLEALAKE 49 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH
Confidence 58999999999999999999999999988653
No 279
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.97 E-value=0.62 Score=43.53 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=37.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.++|+.|.+.|++|+++|++++.........-....+......++|+||.+.+.+
T Consensus 14 ~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 14 TGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 588999999999999999999876543211000011223344457899999988554
No 280
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.96 E-value=1.2 Score=41.62 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhh
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD 62 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~ 62 (300)
..+++.|.+.|.+|.+||..-..... . ......++.++++++|+|++++.++ +.++
T Consensus 336 ~~~~~~L~~~g~~v~~~DP~~~~~~~-~--~~~~~~~~~~~~~~ad~~v~~t~~~-~~~~ 391 (411)
T TIGR03026 336 LDIIELLKEKGAKVKAYDPLVPEEEV-K--GLPLIDDLEEALKGADALVILTDHD-EFKD 391 (411)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhhh-h--hcccCCCHHHHHhCCCEEEEecCCH-HHhc
Confidence 46789999999999999986433211 1 1223578889999999999999887 5443
No 281
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=88.95 E-value=0.67 Score=44.84 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=26.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++++|+.++...+.
T Consensus 92 IG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 92 VGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999998876654
No 282
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=88.80 E-value=0.66 Score=37.97 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=41.2
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-----CCCCCCHHHHhhcCCEEEEecCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-----VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g-----~~~~~~~~e~~~~adiVii~vp~ 56 (300)
|+.|.+-..+.||+|+..-||++++....... +-.-++..+.+..-|+||.+...
T Consensus 13 Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 13 GSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred HHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 78889999999999999999999987753221 11122345778899999998843
No 283
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=88.43 E-value=0.72 Score=41.93 Aligned_cols=79 Identities=25% Similarity=0.243 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-----CC--CCCCCHH-HHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-----GV--PTKETPF-EVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-----g~--~~~~~~~-e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
+|..+++.|.+. ++++. +.+++ +..+.+.+. +. ....+.. ...+++|+||+|+|+... .++... .
T Consensus 14 vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~-~~~v~~---a 88 (343)
T PRK00436 14 TGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS-MDLAPQ---L 88 (343)
T ss_pred HHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-HHHHHH---H
Confidence 477788888876 56765 45643 222222211 11 0122222 245789999999999844 444432 2
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
+ ..|..|||.|+..
T Consensus 89 ~-----~aG~~VID~S~~f 102 (343)
T PRK00436 89 L-----EAGVKVIDLSADF 102 (343)
T ss_pred H-----hCCCEEEECCccc
Confidence 2 2357999999755
No 284
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=88.43 E-value=2.3 Score=36.97 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=60.3
Q ss_pred ChHHHHHHHHhCC---Ce-EEEEcCChhhHHHHHhCCCCCCCCHHHH-hhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAG---YK-MAVHDVNCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G---~~-V~~~dr~~~~~~~~~~~g~~~~~~~~e~-~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||..++..|.+.+ ++ +.+++|++++.+.+... ...+.++++. ...+|+|+-|-+.. ++++.... +|..
T Consensus 13 IG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~-av~e~~~~---iL~~-- 85 (267)
T PRK13301 13 IASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQ-AIAEHAEG---CLTA-- 85 (267)
T ss_pred HHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHH-HHHHHHHH---HHhc--
Confidence 5777777776532 44 45689999888888765 6778889996 58899999999654 88777643 4432
Q ss_pred CCCCeEEEEcCC---CCHHHHHHHHHHHhh
Q 022237 76 SVRPQLLIDSST---IDPQTSRNISAAVSN 102 (300)
Q Consensus 76 ~~~~~ivid~st---~~p~~~~~~~~~~~~ 102 (300)
|.-++-.|. ..+...+++.+...+
T Consensus 86 ---g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 86 ---GLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred ---CCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 223333453 234455555555543
No 285
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=88.25 E-value=0.61 Score=41.20 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=29.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|.++|+-|++.|++|.+..|+++|++...++
T Consensus 61 IGKayA~eLAkrG~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 61 IGKAYARELAKRGFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred chHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 69999999999999999999999999888654
No 286
>PRK06182 short chain dehydrogenase; Validated
Probab=88.22 E-value=1.1 Score=38.89 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++++.+.+
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 5899999999999999999999988776653
No 287
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=88.06 E-value=2.3 Score=40.11 Aligned_cols=60 Identities=22% Similarity=0.480 Sum_probs=45.6
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
+|..+.++|.+.|| +|+.+|.+.+. + .|.....+.+|+-...|++++++|.. .+.+++.+
T Consensus 22 ~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i--~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l~e 83 (447)
T TIGR02717 22 VGYAIMKNLIEGGYKGKIYPVNPKAGE---I--LGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVVEE 83 (447)
T ss_pred hHHHHHHHHHhCCCCCcEEEECCCCCc---c--CCccccCCHHHCCCCCCEEEEecCHH-HHHHHHHH
Confidence 47788899999998 57666655432 1 37788889999877899999999887 66677654
No 288
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.94 E-value=0.84 Score=41.10 Aligned_cols=53 Identities=25% Similarity=0.247 Sum_probs=37.8
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHH-----HHHh---CC----CCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMK-----MFSD---MG----VPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~-----~~~~---~g----~~~~~~~~e~~~~adiVii~v 54 (300)
||..+|..++..|+ +|.++|++++++. .... .+ +....+. +++++||+||++.
T Consensus 17 vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 17 IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 68999999999996 8999999998542 1111 11 1223444 6789999999977
No 289
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=87.93 E-value=0.92 Score=39.98 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=51.2
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC----CCC-CCCCHH--HHhhcCCEEEEecCChhhhhh---hhcCCCCc
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM----GVP-TKETPF--EVAEASDVVITMLPSSSHVLD---VYNGPNGL 70 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~----g~~-~~~~~~--e~~~~adiVii~vp~~~~~~~---v~~~~~~~ 70 (300)
+++++..|++.|. +++++||+.++++++.+. +.. ...... +...++|+||=|+|....-.. .+. ...
T Consensus 138 arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~--~~~ 215 (283)
T COG0169 138 ARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVP--AEL 215 (283)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCCCCCCCc--HHh
Confidence 5788999999995 799999999999888664 211 111111 112269999999988744332 111 112
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
.++..++.|+--.+
T Consensus 216 -----l~~~~~v~D~vY~P 229 (283)
T COG0169 216 -----LPKGAIVYDVVYNP 229 (283)
T ss_pred -----cCcCCEEEEeccCC
Confidence 23457888865444
No 290
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=87.72 E-value=1.5 Score=45.49 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=42.8
Q ss_pred ChHHHHHHHHhCC-Ce-------------EEEEcCChhhHHHHHhC--CC---CC-CCCHHHH---hhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG-YK-------------MAVHDVNCNVMKMFSDM--GV---PT-KETPFEV---AEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G-~~-------------V~~~dr~~~~~~~~~~~--g~---~~-~~~~~e~---~~~adiVii~vp~~ 57 (300)
||+..++.|++.. ++ |.+.|+++++++++.+. ++ .. +.+.++. ++++|+|++|+|..
T Consensus 580 VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~ 659 (1042)
T PLN02819 580 VCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVDVVISLLPAS 659 (1042)
T ss_pred HHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCCEEEECCCch
Confidence 6888899998753 33 88999999998887653 32 22 3454444 46899999999997
Q ss_pred hh
Q 022237 58 SH 59 (300)
Q Consensus 58 ~~ 59 (300)
-.
T Consensus 660 ~H 661 (1042)
T PLN02819 660 CH 661 (1042)
T ss_pred hh
Confidence 44
No 291
>PRK06139 short chain dehydrogenase; Provisional
Probab=87.71 E-value=0.9 Score=41.03 Aligned_cols=31 Identities=10% Similarity=0.296 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++++++.+
T Consensus 19 IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~ 49 (330)
T PRK06139 19 IGQATAEAFARRGARLVLAARDEEALQAVAE 49 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776643
No 292
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=87.42 E-value=5.6 Score=30.94 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=49.4
Q ss_pred HHHHHHhCCCeEEEEcCChhhH----HHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 5 MASNLMKAGYKMAVHDVNCNVM----KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 5 la~~l~~~G~~V~~~dr~~~~~----~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
.+..|.+.||+|++=.-.-+.. ++..+.|+...++.++++.+||+|+-.-|.+. .++- . .++|+
T Consensus 19 ~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~--~e~~-----~-----l~~g~ 86 (136)
T PF05222_consen 19 DVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSE--EELA-----L-----LKPGQ 86 (136)
T ss_dssp HHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---G--GGGG-----G-----S-TTC
T ss_pred HHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCH--HHHh-----h-----cCCCc
Confidence 4678899999998754321221 34566799888888899999999988775531 1111 1 23557
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
+++- -..|....++.+.+..
T Consensus 87 ~li~--~~~~~~~~~~~~~l~~ 106 (136)
T PF05222_consen 87 TLIG--FLHPAQNKELLEALAK 106 (136)
T ss_dssp EEEE--E--GGGHHHHHHHHHH
T ss_pred EEEE--eeccccCHHHHHHHHH
Confidence 8773 3334344555555443
No 293
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=87.37 E-value=0.67 Score=40.43 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=37.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC--CCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+.|++|++.+|++.........+... .....+.+.++|+||-|..
T Consensus 10 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 10 IGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred hhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 589999999999999999999987654332111111 1233455667888877764
No 294
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=87.18 E-value=1.3 Score=36.99 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=38.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChh-hHHHHHhCC-CCCCC-C-HHHHhhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPTKE-T-PFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~-~~~~~~~~g-~~~~~-~-~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
||...++.|.+.|++|++++++.. .+..+...+ +.... . ..+.+.++|+||.|+.++ ++...+
T Consensus 21 va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~-elN~~i 87 (202)
T PRK06718 21 VAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP-RVNEQV 87 (202)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH-HHHHHH
Confidence 466778889999999999987642 344554443 11111 1 123457888888888776 444333
No 295
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=86.96 E-value=1.9 Score=37.68 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=53.5
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcC--ChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDV--NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr--~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||..+++.+.+. +.++. ++++ +.++.......+....++.+++-.+.|+|+.|.|.. ...+.... .+..
T Consensus 12 iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~~~---aL~a--- 84 (265)
T PRK13303 12 IGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHVVP---ILKA--- 84 (265)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHHHH---HHHc---
Confidence 688888888875 45543 4444 333333333335566778877745699999999887 54555432 3322
Q ss_pred CCCeEEEEcCCC---CHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSSTI---DPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st~---~p~~~~~~~~~~~~ 102 (300)
+..+++ .|+. .+...+++.+..++
T Consensus 85 -Gk~Vvi-~s~~Al~d~~~~~~L~~~A~~ 111 (265)
T PRK13303 85 -GIDCAV-ISVGALADEALRERLEQAAEA 111 (265)
T ss_pred -CCCEEE-eChHHhcCHHHHHHHHHHHHH
Confidence 113444 3432 35445666666554
No 296
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=86.75 E-value=2.1 Score=40.72 Aligned_cols=82 Identities=11% Similarity=0.169 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHH--HHh--------------------CCCCCCCCHHHHhhcCCEEEEecCChhhh
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKM--FSD--------------------MGVPTKETPFEVAEASDVVITMLPSSSHV 60 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~--~~~--------------------~g~~~~~~~~e~~~~adiVii~vp~~~~~ 60 (300)
..++..|.+.|.+|.+||.--...+. ... .+...+.++.++++++|+|++++..+ +.
T Consensus 347 ~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~-ef 425 (473)
T PLN02353 347 IDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGICILTEWD-EF 425 (473)
T ss_pred HHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeCCHHHHhcCCCEEEECCCCh-Hh
Confidence 46889999999999999976332211 110 01234557778999999999999887 55
Q ss_pred hhh-hcCCCCcccCCCCCCCeEEEEcCCCCH
Q 022237 61 LDV-YNGPNGLLQGGNSVRPQLLIDSSTIDP 90 (300)
Q Consensus 61 ~~v-~~~~~~~l~~~~~~~~~ivid~st~~p 90 (300)
+.+ +..+...+. +..+|+|+.++-.
T Consensus 426 ~~l~~~~~~~~m~-----~~~~viD~rn~l~ 451 (473)
T PLN02353 426 KTLDYQKIYDNMQ-----KPAFVFDGRNVLD 451 (473)
T ss_pred cccCHHHHHHhcc-----CCCEEEECCCCCC
Confidence 543 111111121 2248999888764
No 297
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=86.71 E-value=1.4 Score=37.91 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++++.|+++|++|++.+|++++.+.+.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 18 IGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988777654
No 298
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=86.60 E-value=0.87 Score=39.86 Aligned_cols=56 Identities=16% Similarity=0.018 Sum_probs=38.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC----CCCCCCHHHHh------hc-CCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG----VPTKETPFEVA------EA-SDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g----~~~~~~~~e~~------~~-adiVii~vp~ 56 (300)
+|+.+++.|.+.|++|.+..|++++.....-.. ....+++.+++ +. +|.|+++.|.
T Consensus 11 iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 11 TASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 589999999999999999999987653211111 11123344555 45 8999988874
No 299
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.56 E-value=1 Score=40.50 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=39.6
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHh----C-----CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD----M-----GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~----~-----g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|.++|..|+..|. ++.++|++.+++..... . ......+..+.+++||+||++...
T Consensus 17 vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 17 VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 48899999998887 79999999886543322 1 112223445678999999998754
No 300
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.43 E-value=1.9 Score=36.03 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.5
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVN 22 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~ 22 (300)
||+.+|..|++.|+ +++++|.+
T Consensus 32 lGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 32 LGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHHHHHHHHcCCCEEEEECCC
Confidence 69999999999999 69999998
No 301
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.41 E-value=1.5 Score=38.48 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=38.3
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+++++..|.+.|. +|+++||++++.+.+.+. +......+ ....+|+||=|+|-.
T Consensus 134 arAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 134 AKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 5788889999897 599999999999888654 21111111 124589999999854
No 302
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=86.40 E-value=1.6 Score=40.33 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhh
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
..+++.|.+.|.+|.+||..-.... ..+...++++.++++++|+|++.+-++ +++.+-
T Consensus 319 ~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 376 (388)
T PRK15057 319 QGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRMAE-ELKDVA 376 (388)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCCcH-HHHhhh
Confidence 4688999999999999998633332 236778899999999999999999776 766543
No 303
>PRK06180 short chain dehydrogenase; Provisional
Probab=86.37 E-value=1.5 Score=38.28 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 16 iG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 16 FGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred HHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 5899999999999999999999988776654
No 304
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=86.33 E-value=2.2 Score=40.88 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=28.1
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~ 35 (300)
|..-+..+...|.+|+++|+++++.+...+.|+.
T Consensus 177 GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 177 GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 5555666667799999999999999999888875
No 305
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=86.25 E-value=0.85 Score=40.54 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=38.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+.|++|++.+|+++....+...++. ...+..++++.+|+||-+..
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 12 VGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred hhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 58999999999999999999988765444322321 11234456677888887763
No 306
>PRK05693 short chain dehydrogenase; Provisional
Probab=86.03 E-value=2 Score=37.24 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (274)
T PRK05693 13 IGRALADAFKAAGYEVWATARKAEDVEALAA 43 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766654
No 307
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=86.01 E-value=1.6 Score=38.55 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=39.5
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----CC--CCCCCH---HHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----GV--PTKETP---FEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-----g~--~~~~~~---~e~~~~adiVii~vp~~ 57 (300)
|++++..|++.|. +|+++||++++++.+.+. +. ....+. .+....+|+||=|+|-.
T Consensus 139 arAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G 205 (283)
T PRK14027 139 GNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence 6788999999996 799999999999888653 11 011121 23456789888888755
No 308
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=85.85 E-value=0.75 Score=41.83 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=44.1
Q ss_pred hHHHHHHHHhCCCe---EEEE--cCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYK---MAVH--DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~---V~~~--dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|..+.+.|.+.+|+ +... .|+..+.-..............+.++++|+||+|+|.. ...++... ..
T Consensus 20 G~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~~~~~---~~----- 90 (344)
T PLN02383 20 GQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKKFGPI---AV----- 90 (344)
T ss_pred HHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHHHHHH---HH-----
Confidence 77888889888884 3222 44443332221111111111224558999999999998 44444431 11
Q ss_pred CCCeEEEEcCCC
Q 022237 77 VRPQLLIDSSTI 88 (300)
Q Consensus 77 ~~~~ivid~st~ 88 (300)
..|..|||.|+.
T Consensus 91 ~~g~~VIDlS~~ 102 (344)
T PLN02383 91 DKGAVVVDNSSA 102 (344)
T ss_pred hCCCEEEECCch
Confidence 235789999873
No 309
>PRK06196 oxidoreductase; Provisional
Probab=85.40 E-value=1.9 Score=38.47 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 38 IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~ 68 (315)
T PRK06196 38 LGLETTRALAQAGAHVIVPARRPDVAREALA 68 (315)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766543
No 310
>PRK07109 short chain dehydrogenase; Provisional
Probab=85.26 E-value=1.4 Score=39.84 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++++.+.
T Consensus 20 IG~~la~~la~~G~~Vvl~~R~~~~l~~~~ 49 (334)
T PRK07109 20 VGRATARAFARRGAKVVLLARGEEGLEALA 49 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999988776654
No 311
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.24 E-value=2.1 Score=40.24 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--CCCC----CCCHH----HHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--GVPT----KETPF----EVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--g~~~----~~~~~----e~~~~adiVii~vp~~ 57 (300)
+|..+++.|.+.|++|++.|+++++.+.+.+. +... ..+.. ..++++|.|+++.+++
T Consensus 242 ~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 242 IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 47889999999999999999999999888764 2211 11222 1245888888888766
No 312
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.06 E-value=2.2 Score=40.28 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=37.6
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEe
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 53 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~ 53 (300)
|.+.|+.|.+.|++|+++|+++.....+...|+.......+.+.++|+||..
T Consensus 21 G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 21 GLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred HHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 6678999999999999999886655556666765433223445789988863
No 313
>PRK05993 short chain dehydrogenase; Provisional
Probab=85.03 E-value=1.4 Score=38.42 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=28.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|.++++.|++.|++|++.+|++++++.+.+.
T Consensus 16 iG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 16 IGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 58899999999999999999999988777654
No 314
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=84.97 E-value=1.3 Score=36.95 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=29.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|.++|++|...|.+|+++.|+.+++++..+.
T Consensus 17 IGl~lak~f~elgN~VIi~gR~e~~L~e~~~~ 48 (245)
T COG3967 17 IGLALAKRFLELGNTVIICGRNEERLAEAKAE 48 (245)
T ss_pred hhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc
Confidence 68999999999999999999999999988765
No 315
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=84.91 E-value=3.1 Score=33.20 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=53.6
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-CCCC-CCH-HHHhhcCCEEEEecCChhhhhhhhcCC---CCccc---
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPTK-ETP-FEVAEASDVVITMLPSSSHVLDVYNGP---NGLLQ--- 72 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g-~~~~-~~~-~e~~~~adiVii~vp~~~~~~~v~~~~---~~~l~--- 72 (300)
|...++.|.+.|++|++++ ++..+++.+.+ .... ..+ ++-++++|+||.++.++ ++...+... .....
T Consensus 25 a~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~-e~N~~i~~~a~~~~~vn~~d 101 (157)
T PRK06719 25 AYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQH-AVNMMVKQAAHDFQWVNVVS 101 (157)
T ss_pred HHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCH-HHHHHHHHHHHHCCcEEECC
Confidence 5566788889999999995 44444444432 1111 111 23367899999999776 433322211 00000
Q ss_pred ---------CCCCCCCeEEE--EcCCCCHHHHHHHHHHHhh
Q 022237 73 ---------GGNSVRPQLLI--DSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 73 ---------~~~~~~~~ivi--d~st~~p~~~~~~~~~~~~ 102 (300)
+.....+.+.| -+++.+|..++++.+.+.+
T Consensus 102 ~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 102 DGTESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQELTS 142 (157)
T ss_pred CCCcCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence 00001223333 4445788888888877764
No 316
>PRK05866 short chain dehydrogenase; Provisional
Probab=84.88 E-value=1.5 Score=38.83 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++++++.+
T Consensus 52 IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 52 IGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999888766643
No 317
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=84.71 E-value=2.5 Score=38.11 Aligned_cols=79 Identities=23% Similarity=0.231 Sum_probs=42.9
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----CC---CC-CCCHHHH-hhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----GV---PT-KETPFEV-AEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-----g~---~~-~~~~~e~-~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
|.-|.+.|+.+.+ ++..+..+..+=..+.+. |. .. ..++++. .++||+||+|+|...+.+ .... +
T Consensus 15 G~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~s~~-~v~~---l 90 (349)
T COG0002 15 GLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGVSAE-LVPE---L 90 (349)
T ss_pred HHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchhHHH-HHHH---H
Confidence 5667777776543 666554433222222221 21 11 1233443 446999999999995544 3321 2
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
++ .+..|||+|+-.
T Consensus 91 ~~-----~g~~VIDLSadf 104 (349)
T COG0002 91 LE-----AGCKVIDLSADF 104 (349)
T ss_pred Hh-----CCCeEEECCccc
Confidence 32 235699999855
No 318
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.63 E-value=9.2 Score=36.18 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=37.9
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh-----hHHHHHhCCCCCC--CCHHHHhhcCCEEEEec
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTK--ETPFEVAEASDVVITML 54 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~-----~~~~~~~~g~~~~--~~~~e~~~~adiVii~v 54 (300)
|.++|+.|.+.|++|+++|+++. ...++.+.|+... ....+.+.++|+||.+.
T Consensus 26 G~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 26 NIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 67899999999999999998753 2244666676442 22345568899998874
No 319
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=84.56 E-value=1.5 Score=38.98 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=39.6
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC------CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM------GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~----~~~------g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|.++|..|+..+. ++.++|++.+++... ... ......+..+.+++||+||++...
T Consensus 7 VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 7 VGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 48899999988876 699999988755322 221 122333456788999999998754
No 320
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=84.55 E-value=2.5 Score=36.07 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=49.6
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHh----CCCC---CCCCHHHHhh---cCCEEEEe-----cCChhhhhhhhcC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSD----MGVP---TKETPFEVAE---ASDVVITM-----LPSSSHVLDVYNG 66 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~----~g~~---~~~~~~e~~~---~adiVii~-----vp~~~~~~~v~~~ 66 (300)
|+.|+..+++.|.+|++.|.+++.++-... .|+. ...+.+|... .=|+|+++ ||++.. ++..
T Consensus 70 gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~---~~~~ 146 (243)
T COG2227 70 GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPES---FLRA 146 (243)
T ss_pred ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHH---HHHH
Confidence 678999999999999999999988765542 2433 2234455443 46887764 677754 3333
Q ss_pred CCCcccCCCCCCCeEEEEcCCCC
Q 022237 67 PNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~st~~ 89 (300)
...++ .|+|.+++ ||+-
T Consensus 147 c~~lv----kP~G~lf~--STin 163 (243)
T COG2227 147 CAKLV----KPGGILFL--STIN 163 (243)
T ss_pred HHHHc----CCCcEEEE--eccc
Confidence 33344 34554544 5544
No 321
>PRK07825 short chain dehydrogenase; Provisional
Probab=84.11 E-value=2 Score=37.20 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 17 IGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5889999999999999999999988776543
No 322
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.02 E-value=32 Score=31.00 Aligned_cols=234 Identities=15% Similarity=0.133 Sum_probs=120.5
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCC-CcccCCCCCCCeEEEEcCCCCHH-HHHHHHHHHhhhh-hhhccCCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPN-GLLQGGNSVRPQLLIDSSTIDPQ-TSRNISAAVSNCI-LKEKKDSWEN 114 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~-~~l~~~~~~~~~ivid~st~~p~-~~~~~~~~~~~~~-~~~~~~~~~~ 114 (300)
.+++++..+=+.+|+|||.+ +-.+|+.++. +.++. -+ ++|+-.+|.... ..+.....+..-. +.+-..+...
T Consensus 77 kd~a~~~~dwqtlilav~aD-aY~dvlqqi~~e~L~~---vk-~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~d 151 (431)
T COG4408 77 KDLAQAVGDWQTLILAVPAD-AYYDVLQQIPWEALPQ---VK-SVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYAD 151 (431)
T ss_pred hhHHHhhchhheEEEEeecH-HHHHHHhcCCHhHhcc---cc-EEEEecccccccHHHHHHHhhhCCCceEEEeehhccc
Confidence 46677778889999999998 7788888763 22322 12 233333333322 2233222221100 0000001112
Q ss_pred ceEEEeccCCCh-HhhhcCceEEEecc---CHHHHHHHHHHHHhcCCCeEeeCCccHHHHH-------------------
Q 022237 115 PVMLDAPVSGGV-LAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA------------------- 171 (300)
Q Consensus 115 ~~~~~~pv~g~~-~~~~~g~~~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~------------------- 171 (300)
.++++..-.... ..+.+. .++.|. +....+.+..+++..|-.+..+.++-.|+.-
T Consensus 152 Tk~id~~~p~~alTkavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~a 229 (431)
T COG4408 152 TKYIDAEQPNRALTKAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQA 229 (431)
T ss_pred ceeecccCcchHHHHHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHH
Confidence 233332111100 011111 244443 4566678888888888665555543322211
Q ss_pred ------------H-----HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC--------CccccccCCCCCCc
Q 022237 172 ------------K-----ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA--------RCWSSDSYNPVPGV 226 (300)
Q Consensus 172 ------------k-----~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~--------~s~~~~~~~~~~~~ 226 (300)
| -+..+++.-+.....|.+++..+.|+.+-.+++.++..-. ..+. +.+...+..
T Consensus 230 if~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dI-d~F~~~~~i 308 (431)
T COG4408 230 IFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDI-DEFPQLPPI 308 (431)
T ss_pred HhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccch-hhcccCChH
Confidence 1 1233444445677899999999999998888888875510 0010 111111111
Q ss_pred ccC--------------C--C-CCC-CCCC---Cc-----------chh----hHHHHHHHHHHHHHHcCCCchHHHHHH
Q 022237 227 MEG--------------V--P-ASR-NYGG---GF-----------ASK----LMAKDLNLALASAKEVGVDCPLTSQAQ 270 (300)
Q Consensus 227 ~~~--------------~--~-~~~-~~~~---~~-----------~~~----~~~kd~~~~~~~a~~~g~~~~~~~~~~ 270 (300)
.+. - . +.| -|+. .| .+. +-..-+..+..++..+++.||..+...
T Consensus 309 ~QeYlLfVRYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~l 388 (431)
T COG4408 309 EQEYLLFVRYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLL 388 (431)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 110 0 0 011 1110 01 011 122336889999999999999999999
Q ss_pred HHHHHHHHc
Q 022237 271 DIYAKLCEN 279 (300)
Q Consensus 271 ~~~~~a~~~ 279 (300)
..|+.|+++
T Consensus 389 t~ye~a~k~ 397 (431)
T COG4408 389 TRYEQALKA 397 (431)
T ss_pred HHHHHHHHH
Confidence 999999884
No 323
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.01 E-value=1.5 Score=37.47 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|.+.|++|++.+|++++.+.+.
T Consensus 16 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 16 IGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776654
No 324
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.81 E-value=12 Score=33.67 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=55.5
Q ss_pred CCCeEE-EEcCChhhHHHHHhC-CC---CCCCCHHHHhhcC--CEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEE
Q 022237 12 AGYKMA-VHDVNCNVMKMFSDM-GV---PTKETPFEVAEAS--DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLID 84 (300)
Q Consensus 12 ~G~~V~-~~dr~~~~~~~~~~~-g~---~~~~~~~e~~~~a--diVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid 84 (300)
++|+|. ++||+.+++.++.+. ++ +...+.+|.+++. |+|.+..|.+...+-+.. .+. .+..++++
T Consensus 31 s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l----~l~----~~K~VL~E 102 (351)
T KOG2741|consen 31 SNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVML----ALN----KGKHVLCE 102 (351)
T ss_pred cCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHH----HHH----cCCcEEec
Confidence 367755 679999999888775 33 5678999999865 999999999977665543 222 12235554
Q ss_pred cC-CCCHHHHHHHHHHHhh
Q 022237 85 SS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 85 ~s-t~~p~~~~~~~~~~~~ 102 (300)
-= .....+++++.+..+.
T Consensus 103 KPla~n~~e~~~iveaA~~ 121 (351)
T KOG2741|consen 103 KPLAMNVAEAEEIVEAAEA 121 (351)
T ss_pred ccccCCHHHHHHHHHHHHH
Confidence 22 2445666777666654
No 325
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=83.79 E-value=2.1 Score=36.53 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=26.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|.+.|++|++.+|++++++.+.+
T Consensus 12 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 12 FGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4889999999999999999999988766643
No 326
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=83.71 E-value=1.9 Score=36.90 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|+++..+.+.
T Consensus 23 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 52 (256)
T PRK06124 23 LGFEIARALAGAGAHVLVNGRNAATLEAAV 52 (256)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999987766553
No 327
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=83.65 E-value=1.8 Score=39.95 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=46.6
Q ss_pred hHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCC-------CCCCCCHH-HHhhcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 2 GFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VPTKETPF-EVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 2 G~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~-e~~~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
|..|.+.|.++ .++|..+.+++..-+.+.... .....+.+ +.++++|+||+|+|.. ...++... +.
T Consensus 51 G~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-~s~~i~~~----~~ 125 (381)
T PLN02968 51 GAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-TTQEIIKA----LP 125 (381)
T ss_pred HHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-HHHHHHHH----Hh
Confidence 67788888877 568887766544332222111 11111122 2258899999999987 55555532 21
Q ss_pred CCCCCCCeEEEEcCCCC
Q 022237 73 GGNSVRPQLLIDSSTID 89 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~ 89 (300)
.+..|||.|+..
T Consensus 126 -----~g~~VIDlSs~f 137 (381)
T PLN02968 126 -----KDLKIVDLSADF 137 (381)
T ss_pred -----CCCEEEEcCchh
Confidence 236899999744
No 328
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.62 E-value=2.4 Score=39.89 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=39.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh-hhH----HHHHhCCCCC--CCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC-NVM----KMFSDMGVPT--KETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~-~~~----~~~~~~g~~~--~~~~~e~~~~adiVii~vp~ 56 (300)
+|.++|+.|++.|++|+++|++. +.+ +++.+.|... .....+....+|+||.+.-.
T Consensus 16 ~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 16 SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 47899999999999999999985 333 3344445432 22334556789999998743
No 329
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=83.61 E-value=2.5 Score=37.72 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=40.7
Q ss_pred ChHHHHHHHHhCCC-eEE-EEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGY-KMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
.|.-|.+.|..+.+ ++. +..++. + . ..+.++.++++|++|+|+|...+ .+.... +. ..
T Consensus 13 ~G~el~rlL~~HP~~el~~l~s~~~-----~-----~-~~~~~~~~~~~D~vFlalp~~~s-~~~~~~---~~-----~~ 72 (310)
T TIGR01851 13 TGLQIRERLSGRDDIELLSIAPDRR-----K-----D-AAERAKLLNAADVAILCLPDDAA-REAVSL---VD-----NP 72 (310)
T ss_pred hHHHHHHHHhCCCCeEEEEEecccc-----c-----C-cCCHhHhhcCCCEEEECCCHHHH-HHHHHH---HH-----hC
Confidence 37778888887643 333 333321 1 1 12455666899999999999844 444432 11 23
Q ss_pred CeEEEEcCC
Q 022237 79 PQLLIDSST 87 (300)
Q Consensus 79 ~~ivid~st 87 (300)
|..|||.|+
T Consensus 73 g~~VIDlSa 81 (310)
T TIGR01851 73 NTCIIDAST 81 (310)
T ss_pred CCEEEECCh
Confidence 478999997
No 330
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=83.52 E-value=2.6 Score=39.36 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=41.3
Q ss_pred HHHHHHHHhCC-CeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhh
Q 022237 3 FRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD 62 (300)
Q Consensus 3 ~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~ 62 (300)
..+++.|.+.| .+|.+||..-.......... ....++.++++++|+|+++++.+ +.++
T Consensus 343 ~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~-~~~~~~~~~~~~ad~vvi~t~~~-~~~~ 401 (415)
T PRK11064 343 MEIAELIAQWHSGETLVVEPNIHQLPKKLDGL-VTLVSLDEALATADVLVMLVDHS-QFKA 401 (415)
T ss_pred HHHHHHHHhcCCcEEEEECCCCCchhhhccCc-eeeCCHHHHHhCCCEEEECCCCH-Hhcc
Confidence 46889999996 99999998643322211111 23468889999999999999887 5553
No 331
>PRK11579 putative oxidoreductase; Provisional
Probab=83.40 E-value=11 Score=34.02 Aligned_cols=86 Identities=17% Similarity=0.301 Sum_probs=53.2
Q ss_pred HHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 7 SNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 7 ~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
..+.+. +.++. ++|++++++.. .. +...+.+.++.++ +.|+|++|+|+....+-+.. .++. +.++
T Consensus 22 ~~~~~~~~~~l~av~d~~~~~~~~--~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~----al~a----GkhV 91 (346)
T PRK11579 22 PLIAGTPGLELAAVSSSDATKVKA--DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKA----ALEA----GKHV 91 (346)
T ss_pred HHHhhCCCCEEEEEECCCHHHHHh--hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHHC----CCeE
Confidence 334443 56765 68999887642 22 4456789999986 57999999999876655443 2221 2245
Q ss_pred EEEcC-CCCHHHHHHHHHHHhh
Q 022237 82 LIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 82 vid~s-t~~p~~~~~~~~~~~~ 102 (300)
+++-- .....+++++.+..++
T Consensus 92 l~EKPla~t~~ea~~l~~~a~~ 113 (346)
T PRK11579 92 VVDKPFTVTLSQARELDALAKS 113 (346)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 55522 3455666777666654
No 332
>PRK08177 short chain dehydrogenase; Provisional
Probab=83.35 E-value=2.5 Score=35.49 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|+++..+.+.
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (225)
T PRK08177 13 LGLGLVDRLLERGWQVTATVRGPQQDTALQ 42 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCcchHHHH
Confidence 589999999999999999999988766554
No 333
>PLN02780 ketoreductase/ oxidoreductase
Probab=83.34 E-value=1.4 Score=39.63 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++++|++++++++.+
T Consensus 65 IG~alA~~La~~G~~Vil~~R~~~~l~~~~~ 95 (320)
T PLN02780 65 IGKGFAFQLARKGLNLVLVARNPDKLKDVSD 95 (320)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998876643
No 334
>PRK08643 acetoin reductase; Validated
Probab=83.24 E-value=1.7 Score=37.13 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=26.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+++.
T Consensus 14 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08643 14 IGFAIAKRLVEDGFKVAIVDYNEETAQAAA 43 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987766554
No 335
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.11 E-value=3.1 Score=39.77 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=40.3
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHhhcCCEEEEecC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLP 55 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--~~~~e~~~~adiVii~vp 55 (300)
|.+.++.|.+.|++|+++|+++...+.+.+.|+... ....+.++++|+||.+-.
T Consensus 24 G~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpG 79 (488)
T PRK03369 24 GRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPG 79 (488)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCC
Confidence 677788888999999999988777766666676442 223455678999998763
No 336
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=82.95 E-value=2.7 Score=36.04 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=25.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|+.+++.|+++||+|++..|++++....
T Consensus 29 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 29 TGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 58999999999999999999998876554
No 337
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=82.91 E-value=4.5 Score=36.38 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=69.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcC-ChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr-~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
+|+-.|+++..-|-.|+.||. .+.. ...+.|+.. .+.+|+...||.|-+-+|-..+.+.++... .+.. .++|
T Consensus 157 IGseVA~r~k~~gm~vI~~dpi~~~~--~~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~T~~lin~~--tfA~--mKkG 229 (406)
T KOG0068|consen 157 IGSEVAVRAKAMGMHVIGYDPITPMA--LAEAFGVQL-VSLEEILPKADFITLHVPLTPSTEKLLNDE--TFAK--MKKG 229 (406)
T ss_pred chHHHHHHHHhcCceEEeecCCCchH--HHHhcccee-eeHHHHHhhcCEEEEccCCCcchhhccCHH--HHHH--hhCC
Confidence 588899999988888888864 3332 333446555 589999999999999999887888777642 3433 4677
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..||++|-........+-+.+..
T Consensus 230 VriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 230 VRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred cEEEEecCCceechHHHHHHHhc
Confidence 89999997766666666665543
No 338
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=82.80 E-value=1.1 Score=36.84 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=30.0
Q ss_pred eEEEEcCChhhHHHHHh--------CCC----CCCCCHHHHhhcCCEEEEecCCh
Q 022237 15 KMAVHDVNCNVMKMFSD--------MGV----PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~--------~g~----~~~~~~~e~~~~adiVii~vp~~ 57 (300)
++.++|+++++++.... .|. ..++|.+++++++|.||.++-..
T Consensus 30 ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 30 EIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp EEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE---TT
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 78999999998864422 232 34779999999999999998554
No 339
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.66 E-value=2.3 Score=38.14 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=37.7
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC----C---CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM----G---VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~----~~~----g---~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|.++|..|+..|. ++.++|++++++... ... . +....+.++ +++||+||++...
T Consensus 14 VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 14 VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 48889999988876 799999988765322 111 1 122345554 7999999997743
No 340
>PRK06349 homoserine dehydrogenase; Provisional
Probab=82.59 E-value=6.4 Score=36.94 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=37.5
Q ss_pred ChHHHHHHHHhC--------C--Ce-EEEEcCChhhHHHHHhCCCCCCCCHHHHhh--cCCEEEEecCCh
Q 022237 1 MGFRMASNLMKA--------G--YK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~--------G--~~-V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~--~adiVii~vp~~ 57 (300)
||+.+++.|.++ | .+ +.++||++++...+...+...+.+.++.++ +.|+|+.|++..
T Consensus 14 VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 14 VGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred HHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 466776666543 3 34 446799988765432234456778888885 479999998654
No 341
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=82.31 E-value=6.7 Score=37.53 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCCCCCCC--C
Q 022237 167 NGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNY--G 237 (300)
Q Consensus 167 ~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~--~ 237 (300)
....+.-+.+++....+.+.+|++.+.++ +++|..++.++++.|+ ..||+++..... +.....-.++ .
T Consensus 326 ~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a---~~~~~~l~~l~~~ 402 (493)
T PLN02350 326 KKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKA---YDRNPDLASLLVD 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHH---HHcCCChhhhcCC
Confidence 45677788899999999999999999883 3699999999999987 577776532211 0000000011 1
Q ss_pred CCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q 022237 238 GGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 283 (300)
Q Consensus 238 ~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~ 283 (300)
+.|. +.....+.+.++..+-+.|+|+|.+.+....|+.....-+..
T Consensus 403 ~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~ 450 (493)
T PLN02350 403 PEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPA 450 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccH
Confidence 1121 234555678899999999999999999999777666554443
No 342
>PRK08339 short chain dehydrogenase; Provisional
Probab=82.30 E-value=1.8 Score=37.44 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=26.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++|+.|++.|++|++.+|++++.+++.
T Consensus 20 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (263)
T PRK08339 20 IGFGVARVLARAGADVILLSRNEENLKKAR 49 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 689999999999999999999988776654
No 343
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=82.10 E-value=2.6 Score=40.70 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=38.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC--CCCHHHHh-hcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEVA-EASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~e~~-~~adiVii~vp~~ 57 (300)
+|++++..|++.|.+|+++||+.++++.+.+. +... ..+..+.. ..+|+|+-++|-.
T Consensus 390 agrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vG 450 (529)
T PLN02520 390 AGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVG 450 (529)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCC
Confidence 47899999999999999999999998888653 2111 11111111 2457777666654
No 344
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=82.09 E-value=1.4 Score=37.40 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=24.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~ 26 (300)
||.++|+.|++.|++|++.+|++++.
T Consensus 8 iG~aia~~l~~~Ga~V~~~~~~~~~~ 33 (241)
T PF13561_consen 8 IGRAIARALAEEGANVILTDRNEEKL 33 (241)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSHHHH
T ss_pred hHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 58999999999999999999999974
No 345
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.82 E-value=2.1 Score=36.77 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 24 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 53 (259)
T PRK08213 24 LGLQIAEALGEAGARVVLSARKAEELEEAA 53 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766554
No 346
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=81.59 E-value=2.8 Score=37.52 Aligned_cols=55 Identities=20% Similarity=0.188 Sum_probs=36.8
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCCh--hhHHH----HHh----CCC----CCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNC--NVMKM----FSD----MGV----PTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~--~~~~~----~~~----~g~----~~~~~~~e~~~~adiVii~vp~ 56 (300)
.|..++..|+..|+ +|+++||++ ++++. +.+ .+. ....+ .+.++++|+||+|+..
T Consensus 12 vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViitag~ 82 (309)
T cd05294 12 VGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIITAGV 82 (309)
T ss_pred HHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEecCC
Confidence 37889999999987 499999965 43321 111 121 12234 4568999999999964
No 347
>PRK12828 short chain dehydrogenase; Provisional
Probab=81.50 E-value=4.4 Score=33.93 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=37.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
+|..+++.|+++|++|++.+|++++..+..+. .. ....+++..-+.+..+++.++.+
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-~~--------~~~~~~~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 19 LGRATAAWLAARGARVALIGRGAAPLSQTLPG-VP--------ADALRIGGIDLVDPQAARRAVDE 75 (239)
T ss_pred HhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-Hh--------hcCceEEEeecCCHHHHHHHHHH
Confidence 58899999999999999999998776544321 00 01234444555555566555543
No 348
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.48 E-value=2.8 Score=39.40 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=37.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh----HHHHHhCCCCCC--CCHHHHhhc-CCEEEEec
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTK--ETPFEVAEA-SDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~----~~~~~~~g~~~~--~~~~e~~~~-adiVii~v 54 (300)
+|.+.|+.|++.|++|+++|+++.. .+.+.+.|.... ....+.... .|+||...
T Consensus 16 ~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 4888999999999999999987532 344555565432 234454444 89888865
No 349
>PRK05875 short chain dehydrogenase; Provisional
Probab=81.47 E-value=2.9 Score=36.20 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 19 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 19 IGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999987765553
No 350
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.26 E-value=3.1 Score=35.15 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=25.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+++.
T Consensus 19 iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~ 48 (239)
T PRK07666 19 IGRAVAIALAKEGVNVGLLARTEENLKAVA 48 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999988766553
No 351
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=81.18 E-value=3.7 Score=31.08 Aligned_cols=85 Identities=13% Similarity=0.162 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH
Q 022237 179 MAVSMLGVSEALTLGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA 256 (300)
Q Consensus 179 ~~~~~~~~~Ea~~l~~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a 256 (300)
.......+.|+.+++++.|++ .+.+.+.+........ ...+.+.+ |+..+-. -+...=...+++.+
T Consensus 37 ~~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~-----~~~~SM~~------D~~~gr~-tEid~i~G~vv~~a 104 (125)
T PF08546_consen 37 RELIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP-----DNRSSMLQ------DIEAGRP-TEIDYINGYVVRLA 104 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT-----TT--HHHH------HHHTTB---SHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC-----CccccHHH------HHHHccc-ccHHHHHHHHHHHH
Confidence 344558889999999999954 4434444332210000 00111221 1111111 11222258899999
Q ss_pred HHcCCCchHHHHHHHHHHH
Q 022237 257 KEVGVDCPLTSQAQDIYAK 275 (300)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~ 275 (300)
+++|+++|..+.++++++.
T Consensus 105 ~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 105 KKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp HHTT---HHHHHHHHHHHH
T ss_pred HHHCCCCcHHHHHHHHHHH
Confidence 9999999999999988764
No 352
>PRK06101 short chain dehydrogenase; Provisional
Probab=81.11 E-value=2 Score=36.47 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=27.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|..+++.|++.|++|++.+|++++.+++.+.
T Consensus 13 iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 13 IGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 58899999999999999999999888777543
No 353
>PRK07060 short chain dehydrogenase; Provisional
Probab=81.05 E-value=3 Score=35.24 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=26.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 21 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 21 IGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999887766643
No 354
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=81.01 E-value=2.9 Score=35.19 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|.++|++|++.+|++++.+.+.
T Consensus 17 iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 17 IGRAIALRLAADGAKVVIYDSNEEAAEALA 46 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence 488999999999999999999988765543
No 355
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=80.96 E-value=4 Score=34.05 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.7
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCN 24 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~ 24 (300)
+|+.+++.|++.|. +++++|.+.-
T Consensus 32 lGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 32 LGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCEE
Confidence 48899999999997 7999998743
No 356
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=80.76 E-value=5.7 Score=35.11 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=49.5
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhH--HHHHhCCCCC-CCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVM--KMFSDMGVPT-KETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~--~~~~~~g~~~-~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||..++..+.+. ++++. ++|+++++. ....+.|... ..+.++.++ +.|+|++|+|+....+.... .+
T Consensus 12 IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a~~----al-- 85 (285)
T TIGR03215 12 IGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHARL----LA-- 85 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHHHH----HH--
Confidence 355566666653 45655 679988763 3444457654 446777775 57889999999855443331 12
Q ss_pred CCCCCCeEEEEcCCCC
Q 022237 74 GNSVRPQLLIDSSTID 89 (300)
Q Consensus 74 ~~~~~~~ivid~st~~ 89 (300)
..|+.++|.+...
T Consensus 86 ---~aGk~VIdekPa~ 98 (285)
T TIGR03215 86 ---ELGKIVIDLTPAA 98 (285)
T ss_pred ---HcCCEEEECCccc
Confidence 2346777766544
No 357
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.55 E-value=2.1 Score=36.90 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 18 IGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766643
No 358
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=80.40 E-value=4.4 Score=35.96 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=35.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHH---HHHhC-----C-------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMK---MFSDM-----G-------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~---~~~~~-----g-------~~~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.++||+|.+.+|+++... .+... . +.......++++++|+||-+..
T Consensus 16 IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 85 (322)
T PLN02662 16 IASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTAS 85 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeCC
Confidence 589999999999999999988765432 22111 1 1111234566778888887763
No 359
>PRK08862 short chain dehydrogenase; Provisional
Probab=80.39 E-value=2.4 Score=35.94 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|.+.+|++++++++.+
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~l~~~~~ 47 (227)
T PRK08862 17 LGRTISCHFARLGATLILCDQDQSALKDTYE 47 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999988776643
No 360
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=80.15 E-value=1.6 Score=39.56 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=44.6
Q ss_pred hHHHHHHHHhCCCeE---EEEcCChhhHHHHHhCC--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~V---~~~dr~~~~~~~~~~~g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|..+.+.|.+.||++ ....++.+.-+.+.-.+ ....+...+.++++|+||+|+|.. ..+++... +++
T Consensus 14 G~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~~~~---~~~---- 85 (334)
T PRK14874 14 GREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKYAPK---AAA---- 85 (334)
T ss_pred HHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHHHHH---HHh----
Confidence 788999999988853 55544333222221112 112111123347899999999987 44455432 222
Q ss_pred CCCeEEEEcCCC
Q 022237 77 VRPQLLIDSSTI 88 (300)
Q Consensus 77 ~~~~ivid~st~ 88 (300)
.|..|||.|+.
T Consensus 86 -~G~~VIDlS~~ 96 (334)
T PRK14874 86 -AGAVVIDNSSA 96 (334)
T ss_pred -CCCEEEECCch
Confidence 34689998874
No 361
>PRK05884 short chain dehydrogenase; Provisional
Probab=80.12 E-value=2.2 Score=35.90 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++++.+.+
T Consensus 12 iG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 12 LGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776643
No 362
>PLN02650 dihydroflavonol-4-reductase
Probab=80.09 E-value=3.8 Score=37.05 Aligned_cols=54 Identities=13% Similarity=0.213 Sum_probs=36.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----C-----------CCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G-----------VPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g-----------~~~~~~~~e~~~~adiVii~v 54 (300)
+|+.+++.|++.|++|++.+|+++....+... + +....+..++++++|.||-+.
T Consensus 17 IGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A 85 (351)
T PLN02650 17 IGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVA 85 (351)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeC
Confidence 58999999999999999998887655432210 1 111223456677888888765
No 363
>PRK10206 putative oxidoreductase; Provisional
Probab=80.03 E-value=12 Score=34.01 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=51.2
Q ss_pred CCeEE-EEcCChhhHHHHHhCC-CCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcC-C
Q 022237 13 GYKMA-VHDVNCNVMKMFSDMG-VPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-T 87 (300)
Q Consensus 13 G~~V~-~~dr~~~~~~~~~~~g-~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s-t 87 (300)
+++|. ++|+++++.+...+.+ ....++.++.++ +.|+|++|+|+....+-+.. .++. +.+++++-= .
T Consensus 27 ~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~----al~a----GkhVl~EKPla 98 (344)
T PRK10206 27 SWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKR----ALEA----GKNVLVEKPFT 98 (344)
T ss_pred CEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHH----HHHc----CCcEEEecCCc
Confidence 45664 6899987653333344 556788999985 67999999999866554443 2221 124555421 2
Q ss_pred CCHHHHHHHHHHHhh
Q 022237 88 IDPQTSRNISAAVSN 102 (300)
Q Consensus 88 ~~p~~~~~~~~~~~~ 102 (300)
....+.+++.+..++
T Consensus 99 ~~~~ea~~l~~~a~~ 113 (344)
T PRK10206 99 PTLAEAKELFALAKS 113 (344)
T ss_pred CCHHHHHHHHHHHHH
Confidence 345666777666654
No 364
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.01 E-value=5.2 Score=32.49 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNC 23 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~ 23 (300)
||+.++..|++.|. +++++|.+.
T Consensus 10 lGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 10 LGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999998 599999875
No 365
>PRK06482 short chain dehydrogenase; Provisional
Probab=79.93 E-value=3.4 Score=35.86 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|+.+++.|++.|++|++.+|+++.++.+.+
T Consensus 14 IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 14 FGRGMTERLLARGDRVAATVRRPDALDDLKA 44 (276)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
No 366
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=79.86 E-value=3.4 Score=30.88 Aligned_cols=63 Identities=19% Similarity=0.131 Sum_probs=38.4
Q ss_pred ChHHHHHHHHhC----CCeEE-EEcCC--hhhHHHHHhCCCCCCCCHHHHhh--cCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKA----GYKMA-VHDVN--CNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~----G~~V~-~~dr~--~~~~~~~~~~g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~ 64 (300)
||+.+++.|.+. +++|. ++||+ ..........+.....++++.++ ..|+||-|.+.+ .+.+.+
T Consensus 5 VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~-~~~~~~ 76 (117)
T PF03447_consen 5 VGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSE-AVAEYY 76 (117)
T ss_dssp HHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCH-HHHHHH
T ss_pred HHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCch-HHHHHH
Confidence 588999999876 45654 66888 11111111123456678888887 888888886554 555554
No 367
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=79.83 E-value=6.8 Score=37.67 Aligned_cols=65 Identities=23% Similarity=0.141 Sum_probs=49.0
Q ss_pred cCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 140 GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 140 g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
.++++.+.+.++++.+|+.++.+.+ ..+.....+. ...++|+..+.++.-.+++++..++..+.+
T Consensus 389 Ts~e~~~~~~~~~~~~gk~pi~v~d-~~Gfi~nRll-------~~~~nEa~~ll~eGvas~~dID~a~~~g~G 453 (507)
T PRK08268 389 TSPAARDAAHALFQQDGKAVSVIRD-SPGFVAQRTV-------AMIVNEAADIAQQGIASPADIDLAMRLGLN 453 (507)
T ss_pred CCHHHHHHHHHHHHHcCCeeEEeCC-CccHHHHHHH-------HHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 4789999999999999999998865 3444443332 255699999998755679999888776643
No 368
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=79.78 E-value=4.2 Score=35.99 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=36.4
Q ss_pred hHHHHHHHHhCCC-eEEEEcCCh---hhHHHHHhC-C----C-CCCCCH------HHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNC---NVMKMFSDM-G----V-PTKETP------FEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~---~~~~~~~~~-g----~-~~~~~~------~e~~~~adiVii~vp~~ 57 (300)
+++++..|++.|. +|+++||++ ++++.+.+. + . ....+. .+.+.++|+||-|+|-.
T Consensus 136 arAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~G 207 (288)
T PRK12749 136 STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVG 207 (288)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCC
Confidence 5677777888886 799999995 477766542 1 1 011122 23455789999888765
No 369
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.69 E-value=2.8 Score=37.46 Aligned_cols=56 Identities=14% Similarity=0.288 Sum_probs=38.8
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHH----HHHhC-------CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDM-------GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~----~~~~~-------g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|.++|..|+..|. ++.++|+++++++ ++... ..+...+..+.+++||+||++...
T Consensus 10 VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 10 VGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 48899999998886 7999999876553 23221 111222346778999999998743
No 370
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.51 E-value=3.9 Score=38.75 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=37.3
Q ss_pred hHH-HHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCC-CCHHHHhhcCCEEEEec
Q 022237 2 GFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTK-ETPFEVAEASDVVITML 54 (300)
Q Consensus 2 G~~-la~~l~~~G~~V~~~dr~~~-~~~~~~~~g~~~~-~~~~e~~~~adiVii~v 54 (300)
|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+... ....+.++++|+||..-
T Consensus 19 G~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 19 GMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred hHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 666 79999999999999997653 3445666676442 22334567899998865
No 371
>PRK08589 short chain dehydrogenase; Validated
Probab=79.50 E-value=3.2 Score=36.00 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=23.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|.++++.|++.|++|++.+|+ ++.+++
T Consensus 18 IG~aia~~l~~~G~~vi~~~r~-~~~~~~ 45 (272)
T PRK08589 18 IGQASAIALAQEGAYVLAVDIA-EAVSET 45 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCc-HHHHHH
Confidence 5899999999999999999999 555443
No 372
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.49 E-value=2.6 Score=36.23 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.++..
T Consensus 12 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 12 IGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
No 373
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.44 E-value=3.8 Score=35.07 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=26.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|+++|++|++.+|+++..+.+.+
T Consensus 23 iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 23 IGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5889999999999999999999887766543
No 374
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=79.33 E-value=2.6 Score=36.33 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|+.++++++.+
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 17 LGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 6899999999999999999999888777654
No 375
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=79.18 E-value=2.9 Score=35.58 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=25.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++++|+++..+++.
T Consensus 12 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 41 (254)
T TIGR02415 12 IGKGIAERLAKDGFAVAVADLNEETAKETA 41 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999977665543
No 376
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=79.10 E-value=4 Score=38.48 Aligned_cols=53 Identities=26% Similarity=0.452 Sum_probs=36.7
Q ss_pred hHH-HHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCCC-CHHHHhhcCCEEEEec
Q 022237 2 GFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITML 54 (300)
Q Consensus 2 G~~-la~~l~~~G~~V~~~dr~~~-~~~~~~~~g~~~~~-~~~e~~~~adiVii~v 54 (300)
|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.++++|+||..-
T Consensus 11 Gm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~sp 66 (448)
T TIGR01082 11 GMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSA 66 (448)
T ss_pred HHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECC
Confidence 555 89999999999999997653 33456666765422 2234567899988854
No 377
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=79.08 E-value=1.5 Score=34.60 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=33.4
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEec
Q 022237 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 4 ~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~v 54 (300)
++...|.+.+++|.++|++++....-. +.......++.+.+||+|+++-
T Consensus 22 P~~~~l~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~l~~aD~viiTG 70 (147)
T PF04016_consen 22 PLVEKLKERGAEVRVFDLNPDNIGEEP--GDVPDEDAEEILPWADVVIITG 70 (147)
T ss_dssp CCHHHHCCCCSEEEEEESSGGG--SSC--T-EEGGGHHHHGGG-SEEEEEC
T ss_pred HHHHHHhcCCCCEEEEECCCCCCCCCC--CcCCHHHHHHHHccCCEEEEEe
Confidence 467788888899999999997653321 1113345678889999999864
No 378
>PRK08263 short chain dehydrogenase; Provisional
Probab=79.06 E-value=3 Score=36.18 Aligned_cols=31 Identities=6% Similarity=0.200 Sum_probs=27.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|+++|++|++.+|+++..+.+.+
T Consensus 15 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 45 (275)
T PRK08263 15 FGRAWTEAALERGDRVVATARDTATLADLAE 45 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5889999999999999999999988776654
No 379
>PLN02686 cinnamoyl-CoA reductase
Probab=79.04 E-value=3.4 Score=37.84 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=24.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|+.+++.|++.||+|++..|+.+..+.+
T Consensus 65 IG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 65 LGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999888887665544
No 380
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=78.88 E-value=4.9 Score=35.51 Aligned_cols=140 Identities=15% Similarity=0.173 Sum_probs=81.0
Q ss_pred ccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-
Q 022237 139 GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS- 211 (300)
Q Consensus 139 ~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~~~~~- 211 (300)
|..++....+...+..-. ............++-+.+++....+.+.++++.+.++ .+++..++.++++.|+
T Consensus 112 S~~k~~R~~~s~~~~~~~--~~~~~~~~~~~~i~~l~~Aly~~~i~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCI 189 (291)
T PF00393_consen 112 SAQKEERVAASKILPGPQ--KFDESKEDKEEFIEDLRKALYAAKIISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCI 189 (291)
T ss_dssp HHTHHHHHHHHHHSTT-S---STTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHTSSSST
T ss_pred hcCCcHHHHHHhhccccc--ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccch
Confidence 444444444445444311 1222235677888888899988888888888877653 4689999999999887
Q ss_pred CCccccccCCCCCCcccCCCCCCCC--CCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q 022237 212 ARCWSSDSYNPVPGVMEGVPASRNY--GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 283 (300)
Q Consensus 212 ~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~ 283 (300)
..+++++.... .......-.++ .+.|. +.....+++.++..+-+.|+|+|.+.++.+.|+.....-++.
T Consensus 190 IRs~lL~~i~~---af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ai~~gipvPalsaaL~Y~ds~~~~~lpa 262 (291)
T PF00393_consen 190 IRSWLLDDIAE---AFKENPDLENLLLDPYFAEELKDNQPSLRRVVSLAIEAGIPVPALSAALSYFDSYRSERLPA 262 (291)
T ss_dssp T-BTHHHHHHH---HHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHTTSSHTH
T ss_pred HHHHHHHHHHH---HHHhCCChhccccCHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcccCCCcH
Confidence 45555432211 00000000011 12221 344566789999999999999999999999988776665553
No 381
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=78.88 E-value=19 Score=34.68 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 141 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 141 ~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
+++..+.+..+++.+|+.++.+.+ ..+..+..+. ...++|+..+.++.-.+++++..++..+.+
T Consensus 389 s~e~~~~a~~~~~~~Gk~pi~v~D-~pGfi~nRil-------~~~~nEA~~ll~eGvas~~dID~a~~~g~G 452 (503)
T TIGR02279 389 PDSATRKAIYYLQQAGKKVLQIAD-YPGLLILRTV-------AMLANEAADAVLQGVASAQDIDTAMRLGVN 452 (503)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeCC-cccHHHHHHH-------HHHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 788999999999999999999865 3333433332 256699999998876789999888876654
No 382
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=78.76 E-value=8.1 Score=33.70 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=25.5
Q ss_pred ChHHHHHHHHhCCCe-EEEEcCChhhHHHHHhCCCC
Q 022237 1 MGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 1 mG~~la~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~ 35 (300)
+|...++.+...|.+ |++.++++++.+.+.+.|+.
T Consensus 132 vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 132 LGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 355666666667876 88889999988877777653
No 383
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=78.68 E-value=9.5 Score=33.98 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=50.6
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhh--HHHHHhCCCCC-CCCHHHHhh-----cCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNV--MKMFSDMGVPT-KETPFEVAE-----ASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~--~~~~~~~g~~~-~~~~~e~~~-----~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
||+.+...+.+. +.++. ++|+++++ .....+.|... ..+.++.++ +.|+||+++|..... +.... .
T Consensus 15 IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~-e~a~~---a 90 (302)
T PRK08300 15 IGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHV-RHAAK---L 90 (302)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHH-HHHHH---H
Confidence 355656666653 45654 67998864 24445567765 467788874 589999999987443 33321 1
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
...|+.+||.|...
T Consensus 91 -----~eaGk~VID~sPA~ 104 (302)
T PRK08300 91 -----REAGIRAIDLTPAA 104 (302)
T ss_pred -----HHcCCeEEECCccc
Confidence 13457888888655
No 384
>PRK07063 short chain dehydrogenase; Provisional
Probab=78.67 E-value=2.8 Score=35.93 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 19 IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~ 49 (260)
T PRK07063 19 IGAAIARAFAREGAAVALADLDAALAERAAA 49 (260)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766543
No 385
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.58 E-value=4.2 Score=38.68 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=37.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHH-HhCCCCCCC--CHHHHhhcCCEEEEe
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKE--TPFEVAEASDVVITM 53 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~~--~~~e~~~~adiVii~ 53 (300)
|.++++.|.+.|++|+++|+++....++ .+.|+.... ...+.+.++|+||..
T Consensus 27 G~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 27 GRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred HHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 7789999999999999999987765543 334654422 234456788998876
No 386
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.52 E-value=3.4 Score=35.86 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC 23 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~ 23 (300)
||.++|+.|++.|++|++.+|+.
T Consensus 20 IG~aia~~la~~G~~vil~~r~~ 42 (262)
T PRK07984 20 IAYGIAQAMHREGAELAFTYQND 42 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEecch
Confidence 58899999999999999988873
No 387
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=78.49 E-value=4.5 Score=36.02 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=35.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH---Hh-CC-----------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF---SD-MG-----------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~---~~-~g-----------~~~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|++.|++|++..|+++..... .. .+ +....+..++++..|+||-+..
T Consensus 17 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~ 86 (325)
T PLN02989 17 IASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHTAS 86 (325)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEeCC
Confidence 58999999999999999888887644322 11 11 1112233455667888877763
No 388
>PRK05867 short chain dehydrogenase; Provisional
Probab=78.43 E-value=2.7 Score=35.90 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=26.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|.+.+|++++.+.+.
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 21 IGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999988776654
No 389
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=78.39 E-value=1.6 Score=36.74 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=34.8
Q ss_pred hHHHHHHH--HhCCCeEE-EEcCChhhHHHHHhCC--CCCCCCHHHHhhc--CCEEEEecCChh
Q 022237 2 GFRMASNL--MKAGYKMA-VHDVNCNVMKMFSDMG--VPTKETPFEVAEA--SDVVITMLPSSS 58 (300)
Q Consensus 2 G~~la~~l--~~~G~~V~-~~dr~~~~~~~~~~~g--~~~~~~~~e~~~~--adiVii~vp~~~ 58 (300)
|..+++.+ ...|+++. ++|+++++..... .| +....++.+.+++ .|+|++|+|...
T Consensus 96 G~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 96 GRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred HHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 45555542 24577766 4699887664332 12 2223456666654 999999999874
No 390
>PLN02427 UDP-apiose/xylose synthase
Probab=78.38 E-value=3.4 Score=37.97 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=37.1
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCC-------C-------CCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------V-------PTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~g-------~-------~~~~~~~e~~~~adiVii~v 54 (300)
+|+.+++.|.++ |++|++.+|++++...+...+ + ....+..++++++|+||=+.
T Consensus 26 IGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA 94 (386)
T PLN02427 26 IGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA 94 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence 589999999998 599999999887766554321 1 11122345667788888665
No 391
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.10 E-value=2.8 Score=37.07 Aligned_cols=50 Identities=20% Similarity=0.129 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCC
Q 022237 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 4 ~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
-+++.|.++|++|.+|.-... -..+ .|+....+.+++++++|+||+++|-
T Consensus 15 ~~~~~l~~~g~~v~~~g~~~~-~~~~--~~~~~~~~~~~~~~~~~~~i~p~~~ 64 (287)
T TIGR02853 15 ELIRKLEELDAKISLIGFDQL-EDGF--TGAVKCELLELDLTTLDVVILPVPG 64 (287)
T ss_pred HHHHHHHHCCCEEEEEecccc-cccc--ccceeecchhhhhccCCEEEECCcc
Confidence 478999999999988864321 0012 1566677778889999999999993
No 392
>PRK08017 oxidoreductase; Provisional
Probab=77.95 E-value=3.3 Score=35.29 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|+++|++|++.+|++++.+.+.+
T Consensus 14 IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 14 IGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 5899999999999999999999988766644
No 393
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=77.82 E-value=7.1 Score=35.55 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=39.0
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCCCCCH-H--------HHh--hcCCEEEEecCChhhhhhhh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETP-F--------EVA--EASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~~~~~~~-~--------e~~--~~adiVii~vp~~~~~~~v~ 64 (300)
|...+..+...|. +|++.|+++++++.+.+. |.....+. . +.. ..+|++|.|+..+.++.+.+
T Consensus 181 GLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai 256 (350)
T COG1063 181 GLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQAL 256 (350)
T ss_pred HHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHH
Confidence 4445555556675 688889999999988873 44322221 1 111 24788888887665555444
No 394
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.79 E-value=3.1 Score=35.52 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=26.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (254)
T PRK07478 18 IGRAAAKLFAREGAKVVVGARRQAELDQLV 47 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776654
No 395
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=77.62 E-value=5 Score=37.84 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCeEEEEcCChh--hHHHHHhCCCCCC--CCHHHHhhcCCEEEEec
Q 022237 3 FRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETPFEVAEASDVVITML 54 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~--~~~~~~~~g~~~~--~~~~e~~~~adiVii~v 54 (300)
++||+-|.+.|++|+++|.++. ..+.+.+.|+... .++.....++|+||..-
T Consensus 13 ~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Sp 68 (448)
T TIGR01081 13 GGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGN 68 (448)
T ss_pred HHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECC
Confidence 5799999999999999998653 2234666676542 34445455799888753
No 396
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=77.54 E-value=5.6 Score=36.07 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.9
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCN 24 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~ 24 (300)
+|+.+|..|++.|+ +++++|++.-
T Consensus 35 lGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 35 LGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 48899999999998 7999998853
No 397
>PRK06179 short chain dehydrogenase; Provisional
Probab=77.50 E-value=2 Score=37.04 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~ 26 (300)
+|..+++.|++.|++|++.+|++++.
T Consensus 16 iG~~~a~~l~~~g~~V~~~~r~~~~~ 41 (270)
T PRK06179 16 IGRATAEKLARAGYRVFGTSRNPARA 41 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhhc
Confidence 58999999999999999999997654
No 398
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=77.32 E-value=5.8 Score=36.53 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=52.3
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHH-HHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEE
Q 022237 4 RMASNLMKAGYKMAVHDVNCNVMK-MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL 82 (300)
Q Consensus 4 ~la~~l~~~G~~V~~~dr~~~~~~-~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~iv 82 (300)
-+.+.|.+.|-+|.+||..-.... ++...+.. ..+.+++++++|+|++++-.+ +.+.+=. + .+. ...++|
T Consensus 346 ~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~-~~~~e~al~~~D~vVi~tDH~-~fk~id~--~-~i~----~~~~vi 416 (436)
T COG0677 346 DIIELLEEWGGEVLVYDPYVKELPTREDGEGVT-LAILEEALKDADAVVIATDHS-EFKEIDY--E-AIG----KEAKVI 416 (436)
T ss_pred HHHHHHHHhCCeEEEECCCCCcchhhhhccccc-hhhHHHHhccCCEEEEEeccH-HhhcCCH--H-Hhc----cCCcEE
Confidence 467788889999999998877665 22222222 367899999999999999444 5442211 1 121 124799
Q ss_pred EEcCCCCHH
Q 022237 83 IDSSTIDPQ 91 (300)
Q Consensus 83 id~st~~p~ 91 (300)
+|+-++...
T Consensus 417 vDtrnV~~~ 425 (436)
T COG0677 417 VDTRNVWKR 425 (436)
T ss_pred EECccccch
Confidence 998876544
No 399
>PRK07024 short chain dehydrogenase; Provisional
Probab=77.26 E-value=3.1 Score=35.68 Aligned_cols=31 Identities=13% Similarity=0.350 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 14 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07024 14 IGQALAREYARQGATLGLVARRTDALQAFAA 44 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
No 400
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=77.23 E-value=3.3 Score=35.37 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 21 iG~~ia~~L~~~G~~vvl~~r~~~~~~~~~ 50 (254)
T PRK08085 21 IGFLLATGLAEYGAEIIINDITAERAELAV 50 (254)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999988776553
No 401
>PRK07890 short chain dehydrogenase; Provisional
Probab=77.07 E-value=3.5 Score=35.20 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 17 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 17 LGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 689999999999999999999988766554
No 402
>PRK07062 short chain dehydrogenase; Provisional
Probab=76.75 E-value=3.4 Score=35.54 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.++..
T Consensus 20 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (265)
T PRK07062 20 IGLATVELLLEAGASVAICGRDEERLASAE 49 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
No 403
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=76.73 E-value=1.5 Score=39.75 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=43.9
Q ss_pred hHHHHHHHHhCCCeE---EEEcCChhhHHHHHhCCC--CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~V---~~~dr~~~~~~~~~~~g~--~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|..|.+.|.+++|++ ....++++.-+.+.-.|. ...+...+.++++|+||+|+|.. ...++... ++
T Consensus 12 G~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a~~---~~----- 82 (339)
T TIGR01296 12 GQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFAPK---AA----- 82 (339)
T ss_pred HHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHHHH---HH-----
Confidence 788999999988863 334343332222222221 11111123458999999999988 44444432 22
Q ss_pred CCCeEEEEcCC
Q 022237 77 VRPQLLIDSST 87 (300)
Q Consensus 77 ~~~~ivid~st 87 (300)
..|..|||.|+
T Consensus 83 ~~G~~VID~ss 93 (339)
T TIGR01296 83 KCGAIVIDNTS 93 (339)
T ss_pred HCCCEEEECCH
Confidence 23467999886
No 404
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=76.70 E-value=5.7 Score=34.08 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC-------CCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-------PTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~-------~~~~~~~e~~~~adiVii~vp 55 (300)
.|+.+.+.|.+.||+|.+..|++++...+. .++ ....++..++++.|.++++.+
T Consensus 12 ~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 12 VGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred hHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 489999999999999999999999998887 432 233456677889999999887
No 405
>PRK07814 short chain dehydrogenase; Provisional
Probab=76.64 E-value=3.5 Score=35.51 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 22 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 51 (263)
T PRK07814 22 LGAAIALAFAEAGADVLIAARTESQLDEVA 51 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776654
No 406
>PRK08267 short chain dehydrogenase; Provisional
Probab=76.57 E-value=3.5 Score=35.33 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=27.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|.+.+|+++..+++..
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 13 IGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988877754
No 407
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=76.56 E-value=3.5 Score=35.26 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|+++|++|++.+|+.++.+++.+
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 18 IGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999988776654
No 408
>PRK05855 short chain dehydrogenase; Validated
Probab=76.39 E-value=3.2 Score=40.08 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|+.++.+++.
T Consensus 327 iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 356 (582)
T PRK05855 327 IGRETALAFAREGAEVVASDIDEAAAERTA 356 (582)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776654
No 409
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.26 E-value=6.7 Score=32.98 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.2
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNC 23 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~ 23 (300)
||+.++..|++.|. +++++|.+.
T Consensus 39 lGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 39 LGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999998 599999873
No 410
>PRK15076 alpha-galactosidase; Provisional
Probab=76.26 E-value=2.8 Score=39.44 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=33.5
Q ss_pred CCCeEEEEcCChhhHHHHHh--------CC----CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 12 AGYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 12 ~G~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
.|.+|.++|+++++++.... .+ +..+++..+++++||+||+++-.+
T Consensus 29 ~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ti~vg 86 (431)
T PRK15076 29 RDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVINAIQVG 86 (431)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeEeeeeC
Confidence 35689999999988763211 12 233567789999999999998654
No 411
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.25 E-value=3.8 Score=34.44 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+++.
T Consensus 18 iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 18 IGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 589999999999999999999998776654
No 412
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=76.19 E-value=2.9 Score=36.75 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=36.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH------hCCCCCCCCHHHHhhcC-CEEEEec
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS------DMGVPTKETPFEVAEAS-DVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~------~~g~~~~~~~~e~~~~a-diVii~v 54 (300)
+|+.++..|.++||+|.+.+|++....... ...........+.++.. |.||-+.
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a 72 (314)
T COG0451 12 IGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLA 72 (314)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence 489999999999999999999877665432 00111112334445555 8888766
No 413
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=76.15 E-value=3.7 Score=35.07 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=25.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 22 IGYALAEGLAQAGAEVILNGRDPAKLAAAA 51 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988765543
No 414
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=76.05 E-value=6.2 Score=35.09 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=36.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHH---HHhC-C-----------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM---FSDM-G-----------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~---~~~~-g-----------~~~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+.||+|++..|+.+..+. +... + +....+..++++.+|+||-+..
T Consensus 17 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 86 (322)
T PLN02986 17 IASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFHTAS 86 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEEeCC
Confidence 5899999999999999988777654332 2211 1 1112234566778898887763
No 415
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=75.93 E-value=3.8 Score=34.83 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
||..+++.|++.|++|++.+|++++.+.+.
T Consensus 24 iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~ 53 (247)
T PRK08945 24 IGREAALTYARHGATVILLGRTEEKLEAVY 53 (247)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Confidence 689999999999999999999988776554
No 416
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.91 E-value=3.3 Score=36.83 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=48.8
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCC------CCCCHHHHhhcCCEEEEecCCh--hhhhhhhcCCCCcccCC
Q 022237 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVP------TKETPFEVAEASDVVITMLPSS--SHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 4 ~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~------~~~~~~e~~~~adiVii~vp~~--~~~~~v~~~~~~~l~~~ 74 (300)
.-|+-..--|-+|++.|+|.++++.+... +.+ ...+.++.+..+|+||-+|--+ .+-+-|.++ ++..
T Consensus 182 naAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e---~vk~- 257 (371)
T COG0686 182 NAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTRE---MVKQ- 257 (371)
T ss_pred hHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHH---HHHh-
Confidence 33444445577999999999999888665 322 2234678899999999887433 221212221 2222
Q ss_pred CCCCCeEEEEcCC
Q 022237 75 NSVRPQLLIDSST 87 (300)
Q Consensus 75 ~~~~~~ivid~st 87 (300)
.++|..|||..-
T Consensus 258 -MkpGsVivDVAi 269 (371)
T COG0686 258 -MKPGSVIVDVAI 269 (371)
T ss_pred -cCCCcEEEEEEE
Confidence 245678888664
No 417
>PRK06720 hypothetical protein; Provisional
Probab=75.88 E-value=4.2 Score=32.84 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=24.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|.++++.|++.|++|.+++|+++..+..
T Consensus 28 IG~aia~~l~~~G~~V~l~~r~~~~~~~~ 56 (169)
T PRK06720 28 IGRNTALLLAKQGAKVIVTDIDQESGQAT 56 (169)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 58899999999999999999997765443
No 418
>PRK05854 short chain dehydrogenase; Provisional
Probab=75.66 E-value=3.5 Score=36.74 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
||.++|+.|+++|++|++.+|++++.+++.
T Consensus 26 IG~~~a~~La~~G~~Vil~~R~~~~~~~~~ 55 (313)
T PRK05854 26 LGLGLARRLAAAGAEVILPVRNRAKGEAAV 55 (313)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
No 419
>PRK09291 short chain dehydrogenase; Provisional
Probab=75.66 E-value=5.2 Score=34.08 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|+++|++|++.+|+++....+.+
T Consensus 14 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK09291 14 FGREVALRLARKGHNVIAGVQIAPQVTALRA 44 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999877665543
No 420
>PRK07102 short chain dehydrogenase; Provisional
Probab=75.62 E-value=3.7 Score=34.81 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 13 iG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (243)
T PRK07102 13 IARACARRYAAAGARLYLAARDVERLERLA 42 (243)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988766543
No 421
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.45 E-value=4.1 Score=34.51 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 17 iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 17 IGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999998776654
No 422
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=75.42 E-value=6.9 Score=35.54 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=38.2
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHh-C------------------CCCCCCCHHHHhhcCCEEEEecCChhh
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M------------------GVPTKETPFEVAEASDVVITMLPSSSH 59 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~-~------------------g~~~~~~~~e~~~~adiVii~vp~~~~ 59 (300)
||..+++.+.++ +++|. ++|++++....+.. . +.....++.+...++|+||.|+|....
T Consensus 12 IGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVVIdaT~~~~~ 91 (341)
T PRK04207 12 IGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIVVDATPGGVG 91 (341)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEEEECCCchhh
Confidence 678888877754 46765 45777765554433 1 222334667777789999999987733
No 423
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=75.38 E-value=3.7 Score=35.64 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|.+.+|+++..+.+.
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (278)
T PRK08277 22 LGGAMAKELARAGAKVAILDRNQEKAEAVV 51 (278)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987765553
No 424
>PLN02602 lactate dehydrogenase
Probab=75.38 E-value=4.4 Score=36.93 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=37.2
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC----C-CCCC--CCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM----G-VPTK--ETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~----~~~----g-~~~~--~~~~e~~~~adiVii~vp~ 56 (300)
+|.++|..|+..|. ++.++|++++++... ... + .... .+. +.+++||+||++...
T Consensus 48 VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~ 115 (350)
T PLN02602 48 VGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGA 115 (350)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCC
Confidence 48889999988876 799999998765322 111 1 1222 233 458999999998643
No 425
>PLN02214 cinnamoyl-CoA reductase
Probab=75.35 E-value=4.9 Score=36.32 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=36.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHH-----HHHhC--C-------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMK-----MFSDM--G-------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~-----~~~~~--g-------~~~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.++||+|++..|+.+... .+... . +....+..++++.+|+||-+..
T Consensus 22 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 90 (342)
T PLN02214 22 IASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTAS 90 (342)
T ss_pred HHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEecC
Confidence 489999999999999999998866421 11110 1 1112234566778898888763
No 426
>PRK07454 short chain dehydrogenase; Provisional
Probab=75.31 E-value=4 Score=34.46 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=26.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 18 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 18 IGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988766554
No 427
>PRK05876 short chain dehydrogenase; Provisional
Probab=75.09 E-value=4.1 Score=35.49 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=26.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|+++.++++.
T Consensus 18 IG~ala~~La~~G~~Vv~~~r~~~~l~~~~ 47 (275)
T PRK05876 18 IGLATGTEFARRGARVVLGDVDKPGLRQAV 47 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776553
No 428
>PRK06194 hypothetical protein; Provisional
Probab=75.03 E-value=4 Score=35.55 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=25.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++++|+++..++..
T Consensus 18 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 18 FGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 589999999999999999999987765553
No 429
>PRK08703 short chain dehydrogenase; Provisional
Probab=74.96 E-value=4.3 Score=34.30 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=26.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (239)
T PRK08703 18 LGEQVAKAYAAAGATVILVARHQKKLEKVY 47 (239)
T ss_pred HHHHHHHHHHHcCCEEEEEeCChHHHHHHH
Confidence 589999999999999999999998766553
No 430
>PRK06953 short chain dehydrogenase; Provisional
Probab=74.81 E-value=4.6 Score=33.73 Aligned_cols=31 Identities=6% Similarity=0.259 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|+++..+++..
T Consensus 13 iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~ 43 (222)
T PRK06953 13 IGREFVRQYRADGWRVIATARDAAALAALQA 43 (222)
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHHHHh
Confidence 5899999999999999999999887776654
No 431
>PRK09072 short chain dehydrogenase; Provisional
Probab=74.72 E-value=4.2 Score=34.94 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|+++|++|++.+|++++.+.+..
T Consensus 17 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (263)
T PRK09072 17 IGQALAEALAAAGARLLLVGRNAEKLEALAA 47 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999888766643
No 432
>PRK07856 short chain dehydrogenase; Provisional
Probab=74.69 E-value=4.4 Score=34.54 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV 25 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~ 25 (300)
+|..+++.|++.|++|++.+|++++
T Consensus 18 IG~~la~~l~~~g~~v~~~~r~~~~ 42 (252)
T PRK07856 18 IGAGIARAFLAAGATVVVCGRRAPE 42 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhh
Confidence 5899999999999999999998765
No 433
>PRK08251 short chain dehydrogenase; Provisional
Probab=74.33 E-value=4.2 Score=34.52 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=26.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 14 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (248)
T PRK08251 14 LGAGMAREFAAKGRDLALCARRTDRLEELK 43 (248)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988876654
No 434
>PRK06914 short chain dehydrogenase; Provisional
Probab=74.30 E-value=4.3 Score=35.23 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=26.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|+++|++|++++|+++..+.+.+
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 45 (280)
T PRK06914 15 FGLLTTLELAKKGYLVIATMRNPEKQENLLS 45 (280)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766643
No 435
>PRK07074 short chain dehydrogenase; Provisional
Probab=74.25 E-value=4.4 Score=34.60 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=27.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 14 iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 14 IGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
No 436
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=74.10 E-value=3.1 Score=37.24 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=39.3
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
|..|.+.|.++.+ ++.....+..+ .+ .+.++..+++|+||+|+|...+ .++..+ +. ..|.
T Consensus 15 G~eLlrlL~~hp~~~l~~~~s~~~~--~~--------~~~~~~~~~~DvvFlalp~~~s-~~~~~~---~~-----~~g~ 75 (313)
T PRK11863 15 GLQIRERLAGRSDIELLSIPEAKRK--DA--------AARRELLNAADVAILCLPDDAA-REAVAL---ID-----NPAT 75 (313)
T ss_pred HHHHHHHHhcCCCeEEEEEecCCCC--cc--------cCchhhhcCCCEEEECCCHHHH-HHHHHH---HH-----hCCC
Confidence 6677777776653 33332222211 01 2234556789999999999844 444432 21 2347
Q ss_pred EEEEcCCC
Q 022237 81 LLIDSSTI 88 (300)
Q Consensus 81 ivid~st~ 88 (300)
.|||.|+.
T Consensus 76 ~VIDlSad 83 (313)
T PRK11863 76 RVIDASTA 83 (313)
T ss_pred EEEECChh
Confidence 89999973
No 437
>PRK08264 short chain dehydrogenase; Validated
Probab=73.98 E-value=8.7 Score=32.26 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=24.2
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHH
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKM 28 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~ 28 (300)
+|..+++.|++.|+ +|++.+|++++.+.
T Consensus 18 iG~~la~~l~~~G~~~V~~~~r~~~~~~~ 46 (238)
T PRK08264 18 IGRAFVEQLLARGAAKVYAAARDPESVTD 46 (238)
T ss_pred HHHHHHHHHHHCCcccEEEEecChhhhhh
Confidence 48999999999999 99999999876543
No 438
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.93 E-value=7.4 Score=33.43 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=23.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh--hhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC--NVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~--~~~~~~~ 30 (300)
+|.++|+.|++.|++|++.+|++ +..+++.
T Consensus 21 IG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~ 52 (256)
T PRK07889 21 IAFHVARVAQEQGAEVVLTGFGRALRLTERIA 52 (256)
T ss_pred HHHHHHHHHHHCCCEEEEecCccchhHHHHHH
Confidence 58899999999999999998764 4444443
No 439
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=73.71 E-value=2.4 Score=39.20 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=22.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~ 26 (300)
+|+.+++.|.++|++|++.+|++.+.
T Consensus 72 IG~~l~~~Ll~~G~~V~~l~R~~~~~ 97 (390)
T PLN02657 72 IGKFVVRELVRRGYNVVAVAREKSGI 97 (390)
T ss_pred HHHHHHHHHHHCCCEEEEEEechhhc
Confidence 58999999999999999999987643
No 440
>PRK06398 aldose dehydrogenase; Validated
Probab=73.65 E-value=4.1 Score=35.02 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV 25 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~ 25 (300)
+|.++++.|++.|++|++.+|+...
T Consensus 18 IG~~ia~~l~~~G~~Vi~~~r~~~~ 42 (258)
T PRK06398 18 IGKAVVNRLKEEGSNVINFDIKEPS 42 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCccc
Confidence 5899999999999999999988653
No 441
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=73.55 E-value=6.1 Score=36.83 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM 28 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~ 28 (300)
+|.++++.|+++|++|++.+|++++.+.
T Consensus 190 IG~aLA~~La~~G~~Vi~l~r~~~~l~~ 217 (406)
T PRK07424 190 LGQALLKELHQQGAKVVALTSNSDKITL 217 (406)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5899999999999999999998876543
No 442
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=73.36 E-value=23 Score=29.19 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCC--CCCCCCHHHHhhcCCEEEEecCChh-----hhhhhhc
Q 022237 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSS-----HVLDVYN 65 (300)
Q Consensus 4 ~la~~l~~~G~~V~~~dr~~~~~~~~~~~g--~~~~~~~~e~~~~adiVii~vp~~~-----~~~~v~~ 65 (300)
.++..+.+.|++|..+|...-....+.... ........+.+++||.||++.|... .++..++
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD 90 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLD 90 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHH
Confidence 445566668999988876532233332211 1112233466789999999999542 4555553
No 443
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=73.31 E-value=6 Score=35.81 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=24.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|+.+++.|.+.|++|++.+|++++...+
T Consensus 22 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 22 IGSWLVKLLLQRGYTVHATLRDPAKSLHL 50 (353)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 58999999999999999999987765544
No 444
>PRK08309 short chain dehydrogenase; Provisional
Probab=73.29 E-value=4.9 Score=32.74 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||+.+++.|++.|++|.+.+|++++.+.+..
T Consensus 11 ~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 11 MLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred HHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 4678999999999999999999888766643
No 445
>PRK07677 short chain dehydrogenase; Provisional
Probab=73.07 E-value=5 Score=34.19 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=26.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 13 iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (252)
T PRK07677 13 MGKAMAKRFAEEGANVVITGRTKEKLEEAK 42 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987766554
No 446
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=73.05 E-value=7.9 Score=32.78 Aligned_cols=23 Identities=22% Similarity=0.240 Sum_probs=21.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC 23 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~ 23 (300)
+|.++++.|++.|++|++.+|++
T Consensus 17 IG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 17 LGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEcCch
Confidence 58999999999999999999875
No 447
>PRK05872 short chain dehydrogenase; Provisional
Probab=73.05 E-value=4.6 Score=35.63 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++++++.+
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~ 51 (296)
T PRK05872 21 IGAELARRLHARGAKLALVDLEEAELAALAA 51 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988877654
No 448
>PRK06172 short chain dehydrogenase; Provisional
Probab=72.91 E-value=5.1 Score=34.11 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=26.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|+++..+++.
T Consensus 19 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 48 (253)
T PRK06172 19 IGRATALAFAREGAKVVVADRDAAGGEETV 48 (253)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766554
No 449
>PRK09186 flagellin modification protein A; Provisional
Probab=72.78 E-value=5.1 Score=34.12 Aligned_cols=30 Identities=13% Similarity=0.312 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+|+.|++.|++|++.+|++++.+.+.
T Consensus 16 iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~ 45 (256)
T PRK09186 16 IGSALVKAILEAGGIVIAADIDKEALNELL 45 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEecChHHHHHHH
Confidence 589999999999999999999988876654
No 450
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=72.65 E-value=9.9 Score=36.70 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=30.2
Q ss_pred CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 37 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 37 ~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
+.++.|-+.++||||.++.-++-++ +.+.++|.++||+..-+
T Consensus 196 T~~lae~v~~ADIvIvAiG~PefVK-----------gdWiKpGavVIDvGINy 237 (935)
T KOG4230|consen 196 TRNLAEKVSRADIVIVAIGQPEFVK-----------GDWIKPGAVVIDVGINY 237 (935)
T ss_pred CccHHHHhccCCEEEEEcCCcceee-----------cccccCCcEEEEccccc
Confidence 3467888999999999998874443 11245678999988543
No 451
>PLN02253 xanthoxin dehydrogenase
Probab=72.55 E-value=5 Score=34.83 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|+++..+++.
T Consensus 30 IG~~la~~l~~~G~~v~~~~~~~~~~~~~~ 59 (280)
T PLN02253 30 IGESIVRLFHKHGAKVCIVDLQDDLGQNVC 59 (280)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999887666554
No 452
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=72.52 E-value=6.1 Score=35.63 Aligned_cols=53 Identities=9% Similarity=0.219 Sum_probs=35.3
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhC-CCC-----CC---CCHHHHhhcCCEEEEe
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GVP-----TK---ETPFEVAEASDVVITM 53 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~-g~~-----~~---~~~~e~~~~adiVii~ 53 (300)
+|+.+++.|.+. ||+|++.+|+.++...+... ++. .. ....++++++|+||=+
T Consensus 13 iGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 13 IGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 589999999986 79999999987665544332 211 11 1223456789998854
No 453
>PRK05568 flavodoxin; Provisional
Probab=72.40 E-value=41 Score=25.76 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChh-------hhhhhhcCCCCcccCCC
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS-------HVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~-------~~~~v~~~~~~~l~~~~ 75 (300)
..++..+.+.|++|.+++.+.... ..+.++|.|++..|.-. .+...+......++
T Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~---------------~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~--- 81 (142)
T PRK05568 20 NLIAEGAKENGAEVKLLNVSEASV---------------DDVKGADVVALGSPAMGDEVLEEGEMEPFVESISSLVK--- 81 (142)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCH---------------HHHHhCCEEEEECCccCcccccchhHHHHHHHhhhhhC---
Confidence 455666666677777766543211 23679999999998642 35555554322221
Q ss_pred CCCCeEEEEcC-CC-CHHHHHHHHHHHhh
Q 022237 76 SVRPQLLIDSS-TI-DPQTSRNISAAVSN 102 (300)
Q Consensus 76 ~~~~~ivid~s-t~-~p~~~~~~~~~~~~ 102 (300)
+..+++-.| +- .+...+.+.+.+..
T Consensus 82 --~k~~~~f~t~G~~~~~~~~~~~~~l~~ 108 (142)
T PRK05568 82 --GKKLVLFGSYGWGDGEWMRDWVERMEG 108 (142)
T ss_pred --CCEEEEEEccCCCCChHHHHHHHHHHH
Confidence 112333222 22 24556667776654
No 454
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=72.16 E-value=23 Score=27.38 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=55.1
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--------CCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--------GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
+|+.+++.|++.|+ +++++|.+.-....+... |-..+....+.++ ..++-+.+.+....-... ..
T Consensus 10 lGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~~----~~ 85 (143)
T cd01483 10 LGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISEDNL----DD 85 (143)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecChhhH----HH
Confidence 58999999999998 699999775443333322 2222222222222 234444444332111111 01
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCC
Q 022237 70 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 124 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g 124 (300)
.+ .+..+||+++.. +.....+.+...+. +..|+++-..+
T Consensus 86 ~~-----~~~diVi~~~d~-~~~~~~l~~~~~~~----------~i~~i~~~~~g 124 (143)
T cd01483 86 FL-----DGVDLVIDAIDN-IAVRRALNRACKEL----------GIPVIDAGGLG 124 (143)
T ss_pred Hh-----cCCCEEEECCCC-HHHHHHHHHHHHHc----------CCCEEEEcCCC
Confidence 12 223688987776 55566677766542 25677765544
No 455
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=72.16 E-value=5 Score=26.95 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN 24 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~ 24 (300)
|.+.|..|.++|++|+++++++.
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHCCCcEEEEecCcc
Confidence 67889999999999999998865
No 456
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.99 E-value=5.1 Score=34.15 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++++.+..
T Consensus 21 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 21 LGARFAQVLAQAGAKVVLASRRVERLKELRA 51 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988766643
No 457
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=71.95 E-value=17 Score=32.71 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=25.2
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCC
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~ 35 (300)
|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 182 G~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 182 GCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 5555555556787 688899999999888777754
No 458
>PRK06057 short chain dehydrogenase; Provisional
Probab=71.78 E-value=5.5 Score=34.05 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++.+.+.+.+
T Consensus 19 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (255)
T PRK06057 19 IGLATARRLAAEGATVVVGDIDPEAGKAAAD 49 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887665543
No 459
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=71.66 E-value=5.5 Score=33.10 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=26.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|+++|++|.+.|++.+.+++...
T Consensus 26 IGrAia~~la~~Garv~v~dl~~~~A~ata~ 56 (256)
T KOG1200|consen 26 IGRAIAQLLAKKGARVAVADLDSAAAEATAG 56 (256)
T ss_pred HHHHHHHHHHhcCcEEEEeecchhhHHHHHh
Confidence 6899999999999999999999886655543
No 460
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=71.62 E-value=5.1 Score=35.77 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=26.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 18 IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~ 48 (322)
T PRK07453 18 VGLYAAKALAKRGWHVIMACRNLKKAEAAAQ 48 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999888766543
No 461
>PRK06114 short chain dehydrogenase; Provisional
Probab=71.55 E-value=6.5 Score=33.58 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCN 24 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~ 24 (300)
+|.++++.|++.|++|++.+|+.+
T Consensus 20 IG~~ia~~l~~~G~~v~~~~r~~~ 43 (254)
T PRK06114 20 IGQRIAIGLAQAGADVALFDLRTD 43 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcc
Confidence 589999999999999999998754
No 462
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.48 E-value=5.5 Score=34.63 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV 25 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~ 25 (300)
+|.++|+.|++.|++|++.+|+.+.
T Consensus 21 IG~aiA~~la~~Ga~V~~~~r~~~~ 45 (271)
T PRK06505 21 IAWGIAKQLAAQGAELAFTYQGEAL 45 (271)
T ss_pred HHHHHHHHHHhCCCEEEEecCchHH
Confidence 6899999999999999999988643
No 463
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=71.45 E-value=5.5 Score=34.66 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=32.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcC--CEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEAS--DVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~a--diVii~vp 55 (300)
+|+.+++.|.+.||+|++.+|+.. ......+..+++++. |+||-+..
T Consensus 11 iG~~l~~~l~~~g~~v~~~~r~~~--------d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 11 LGRELVQQLSPEGRVVVALTSSQL--------DLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred HHHHHHHHHHhcCCEEEEeCCccc--------CCCCHHHHHHHHHhCCCCEEEECCc
Confidence 588999999999999999998621 111122344455544 88888764
No 464
>PRK12367 short chain dehydrogenase; Provisional
Probab=71.23 E-value=6 Score=33.92 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=21.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC 23 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~ 23 (300)
+|.++++.|++.|++|++.+|++
T Consensus 26 IG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 26 LGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HHHHHHHHHHHCCCEEEEEECCc
Confidence 58999999999999999999986
No 465
>PRK12939 short chain dehydrogenase; Provisional
Probab=71.21 E-value=5.8 Score=33.55 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=26.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 19 LGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
No 466
>PRK07774 short chain dehydrogenase; Provisional
Probab=71.20 E-value=5.5 Score=33.78 Aligned_cols=30 Identities=23% Similarity=0.363 Sum_probs=25.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 18 iG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 47 (250)
T PRK07774 18 IGQAYAEALAREGASVVVADINAEGAERVA 47 (250)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987665543
No 467
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.19 E-value=5.3 Score=34.09 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=26.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (262)
T PRK13394 19 IGKEIALELARAGAAVAIADLNQDGANAVAD 49 (262)
T ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 5899999999999999999999977665543
No 468
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.15 E-value=7.9 Score=36.46 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=36.0
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh--hHHHHHhC--CCCCC--CCHHHHhhcCCEEEEec
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN--VMKMFSDM--GVPTK--ETPFEVAEASDVVITML 54 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~--~~~~~~~~--g~~~~--~~~~e~~~~adiVii~v 54 (300)
|.++|+.|.+.|++|+++|.++. ..+.+.+. |+... ....+.+.++|+||..-
T Consensus 18 G~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 18 GLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP 76 (448)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence 67799999999999999997653 22345542 55432 12244567899888754
No 469
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=70.98 E-value=5.5 Score=34.06 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=25.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++.+.+.+.
T Consensus 14 IG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 43 (259)
T PRK12384 14 LGAFLCHGLAEEGYRVAVADINSEKAANVA 43 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999987665543
No 470
>PRK06125 short chain dehydrogenase; Provisional
Probab=70.95 E-value=5.9 Score=33.94 Aligned_cols=30 Identities=10% Similarity=0.294 Sum_probs=26.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 19 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (259)
T PRK06125 19 IGAAAAEAFAAEGCHLHLVARDADALEALA 48 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988776543
No 471
>PRK07831 short chain dehydrogenase; Provisional
Probab=70.87 E-value=6 Score=33.96 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=25.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.++..
T Consensus 30 IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~ 59 (262)
T PRK07831 30 IGSATARRALEEGARVVISDIHERRLGETA 59 (262)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987765553
No 472
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.57 E-value=7.4 Score=31.71 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=29.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|..+.+.|+++|.+|+.+.|+++.+..+.++
T Consensus 19 IG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e 50 (245)
T KOG1207|consen 19 IGKEIVLSLAKAGAQVIAVARNEANLLSLVKE 50 (245)
T ss_pred ccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh
Confidence 68899999999999999999999999888765
No 473
>PRK07041 short chain dehydrogenase; Provisional
Probab=70.48 E-value=6.3 Score=32.96 Aligned_cols=30 Identities=10% Similarity=0.286 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 9 iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 38 (230)
T PRK07041 9 IGLALARAFAAEGARVTIASRSRDRLAAAA 38 (230)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988766553
No 474
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=70.43 E-value=6.4 Score=35.56 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=22.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~ 26 (300)
+|+.+++.|++.|++|++.+|++...
T Consensus 16 IG~~l~~~L~~~G~~V~~~~r~~~~~ 41 (349)
T TIGR02622 16 KGSWLSLWLLELGAEVYGYSLDPPTS 41 (349)
T ss_pred hHHHHHHHHHHCCCEEEEEeCCCccc
Confidence 58999999999999999999887643
No 475
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=70.42 E-value=6.2 Score=33.49 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=26.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|.+.|++|++.+|+++..+.+.+
T Consensus 13 lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~ 43 (255)
T TIGR01963 13 IGLAIALALAAAGANVVVNDLGEAGAEAAAK 43 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766643
No 476
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=70.17 E-value=5.5 Score=35.01 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=38.5
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHH--HHHhCC--------CCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMK--MFSDMG--------VPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~--~~~~~g--------~~~~~~~~e~~~~adiVii~v 54 (300)
+|+.+++.|.+.| ++|.+.|+++.... .+...+ +....+..++++++|+||-+.
T Consensus 9 lG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~A 74 (280)
T PF01073_consen 9 LGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTA 74 (280)
T ss_pred HHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeC
Confidence 5899999999999 78999998765432 232222 223345677899999999873
No 477
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=70.01 E-value=7.6 Score=36.59 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=36.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhh----HHHHHhCCCCCC--CCHHHHhhcCCEEEEec
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTK--ETPFEVAEASDVVITML 54 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~----~~~~~~~g~~~~--~~~~e~~~~adiVii~v 54 (300)
|.+.++.|.+.|++|+++|.++.. ...+...++... ..+.+...++|+|+..=
T Consensus 19 G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SP 77 (448)
T COG0771 19 GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSP 77 (448)
T ss_pred cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECC
Confidence 789999999999999999977665 122333443321 12236678999999864
No 478
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=70.01 E-value=13 Score=33.49 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=23.3
Q ss_pred hHHHHHHHHhCCCeEEEEcC---ChhhHHHHHhCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDV---NCNVMKMFSDMGVP 35 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr---~~~~~~~~~~~g~~ 35 (300)
|...++.+...|.+|++.++ ++++.+.+.+.|+.
T Consensus 185 G~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 185 GLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 55555555667888888887 57777766666653
No 479
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.74 E-value=8.9 Score=36.70 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=35.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh--hHHHHHhC--CCCCC--CCHHHHhhcCCEEEEe
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN--VMKMFSDM--GVPTK--ETPFEVAEASDVVITM 53 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~--~~~~~~~~--g~~~~--~~~~e~~~~adiVii~ 53 (300)
|.++|+.|.+.|++|+++|.+.. ..+.+.+. |+... ....+.+.++|+||..
T Consensus 19 G~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 19 GLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 77899999999999999997643 23445444 33321 1234556789999996
No 480
>PLN02583 cinnamoyl-CoA reductase
Probab=69.73 E-value=6.9 Score=34.53 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC 23 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~ 23 (300)
+|+.+++.|+++||+|++..|++
T Consensus 18 IG~~lv~~Ll~~G~~V~~~~R~~ 40 (297)
T PLN02583 18 VGFWLVKRLLSRGYTVHAAVQKN 40 (297)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCc
Confidence 58999999999999999988864
No 481
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=69.67 E-value=8.1 Score=31.87 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 4 RMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 4 ~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
.++..|++.|++|+++|.+++.++.+.
T Consensus 43 ~~a~~la~~g~~V~~iD~s~~~l~~a~ 69 (195)
T TIGR00477 43 RNSLYLSLAGYDVRAWDHNPASIASVL 69 (195)
T ss_pred HHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence 356678888999999999998776553
No 482
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=69.56 E-value=6.7 Score=34.36 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|.+|++.+|++++.+....
T Consensus 20 IG~aia~~la~~Ga~v~i~~r~~~~~~~~~~ 50 (270)
T KOG0725|consen 20 IGKAIALLLAKAGAKVVITGRSEERLEETAQ 50 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6899999999999999999999998766543
No 483
>PRK07035 short chain dehydrogenase; Provisional
Probab=69.51 E-value=6.6 Score=33.38 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=26.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 20 IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~ 49 (252)
T PRK07035 20 IGEAIAKLLAQQGAHVIVSSRKLDGCQAVA 49 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766554
No 484
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.47 E-value=5 Score=36.16 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=37.4
Q ss_pred ChHHHHHHHHhCCC-------eEEEEcCCh--hhHHHH----HhC------CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY-------KMAVHDVNC--NVMKMF----SDM------GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~-------~V~~~dr~~--~~~~~~----~~~------g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.++..|...|. ++.++|+++ ++++-. ... +.....+..+.+++||+||++-..
T Consensus 12 VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVVitAG~ 86 (323)
T cd00704 12 IGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAILVGAF 86 (323)
T ss_pred HHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEEEeCCC
Confidence 57889998887663 499999987 543211 111 122224567889999999998744
No 485
>PRK06138 short chain dehydrogenase; Provisional
Probab=69.46 E-value=6.6 Score=33.27 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=25.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|+++......
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (252)
T PRK06138 17 IGRATAKLFAREGARVVVADRDAEAAERVA 46 (252)
T ss_pred HHHHHHHHHHHCCCeEEEecCCHHHHHHHH
Confidence 589999999999999999999987765544
No 486
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=69.24 E-value=7 Score=33.01 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=24.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|..+++.|+++|++|++.+|++++...+
T Consensus 18 iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 18 IGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999997765444
No 487
>PRK06500 short chain dehydrogenase; Provisional
Probab=69.19 E-value=6.8 Score=33.11 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|+++..+++.
T Consensus 18 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 18 IGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 589999999999999999999987766554
No 488
>PRK09242 tropinone reductase; Provisional
Probab=69.17 E-value=6.7 Score=33.49 Aligned_cols=30 Identities=10% Similarity=0.297 Sum_probs=26.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|+++..+++.
T Consensus 21 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 50 (257)
T PRK09242 21 IGLAIAREFLGLGADVLIVARDADALAQAR 50 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
No 489
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=69.16 E-value=2.8 Score=30.27 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=40.9
Q ss_pred hHHHHHH-HHhCCCeE-EEEcCChhhHHHHHhCCCCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcC
Q 022237 2 GFRMASN-LMKAGYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 2 G~~la~~-l~~~G~~V-~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~ 66 (300)
|.+++.. +...|+.+ .++|.++++..+-.. |+....+..++.+. .|+.++|||.. .++++..+
T Consensus 15 G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~-gipV~~~~~~l~~~~~i~iaii~VP~~-~a~~~~~~ 81 (96)
T PF02629_consen 15 GRALLYNGFSMRGFGIVAVFDVDPEKIGKEIG-GIPVYGSMDELEEFIEIDIAIITVPAE-AAQEVADE 81 (96)
T ss_dssp HHHHHHHHHHHHCECEEEEEEECTTTTTSEET-TEEEESSHHHHHHHCTTSEEEEES-HH-HHHHHHHH
T ss_pred HHHHHHhHHHHcCCCCEEEEEcCCCccCcEEC-CEEeeccHHHhhhhhCCCEEEEEcCHH-HHHHHHHH
Confidence 4445433 33467764 467999987653322 56666677777766 99999999987 55666543
No 490
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=69.14 E-value=7.8 Score=34.91 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=37.2
Q ss_pred ChHHHHHHHHhCCC-------eEEEEcCCh--hhHH----HHHhC------CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY-------KMAVHDVNC--NVMK----MFSDM------GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~-------~V~~~dr~~--~~~~----~~~~~------g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
.|.++|..|...|. ++.++|+++ +++. ++... +.....+..+.+++||+||++...
T Consensus 15 VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVVitAG~ 89 (323)
T TIGR01759 15 IGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAALLVGAF 89 (323)
T ss_pred HHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEEEEeCCC
Confidence 37888888888775 799999965 2222 22221 122234567888999999998754
No 491
>PRK07832 short chain dehydrogenase; Provisional
Probab=69.09 E-value=6.7 Score=33.92 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++++|+++..+.+.
T Consensus 12 iG~~la~~la~~G~~vv~~~r~~~~~~~~~ 41 (272)
T PRK07832 12 IGRATALRLAAQGAELFLTDRDADGLAQTV 41 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988765553
No 492
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=69.09 E-value=3.9 Score=37.04 Aligned_cols=77 Identities=9% Similarity=0.054 Sum_probs=41.9
Q ss_pred hHHHHHHHHhCCCeE---EEEcCChhhHHH---HHhCCCCCC-CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 2 GFRMASNLMKAGYKM---AVHDVNCNVMKM---FSDMGVPTK-ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 2 G~~la~~l~~~G~~V---~~~dr~~~~~~~---~~~~g~~~~-~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
|..+.+.|.+.+|++ ... .+.+.+.+ +........ .+..+ ++++|+||+|+|.. ...++... ..
T Consensus 17 G~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~~~v~~---~~--- 87 (336)
T PRK05671 17 GEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSRSFAEK---AR--- 87 (336)
T ss_pred HHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHHHHHHH---HH---
Confidence 778888898877743 233 22222221 111111111 12233 58999999999976 44444432 11
Q ss_pred CCCCCeEEEEcCCCC
Q 022237 75 NSVRPQLLIDSSTID 89 (300)
Q Consensus 75 ~~~~~~ivid~st~~ 89 (300)
..|..|||.|+..
T Consensus 88 --~~G~~VIDlS~~f 100 (336)
T PRK05671 88 --AAGCSVIDLSGAL 100 (336)
T ss_pred --HCCCeEEECchhh
Confidence 2347899988743
No 493
>PRK07576 short chain dehydrogenase; Provisional
Probab=69.03 E-value=6.4 Score=33.93 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|..+++.|++.|++|++.+|+++..+.+
T Consensus 21 IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 21 INLGIAQAFARAGANVAVASRSQEKVDAA 49 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999998776554
No 494
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.93 E-value=7 Score=35.26 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=36.4
Q ss_pred ChHHHHHHHHhCC-------CeEEEEcCChh--hHHH----HHh------CCCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAG-------YKMAVHDVNCN--VMKM----FSD------MGVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G-------~~V~~~dr~~~--~~~~----~~~------~g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.++..|...+ .+|.++|+++. +++. +.. .......+..+++++||+||++.-.
T Consensus 14 VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI~tAG~ 88 (325)
T cd01336 14 IAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAM 88 (325)
T ss_pred HHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEEEeCCc
Confidence 3788899888744 48999999653 2221 111 0112235667888999999998743
No 495
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.91 E-value=7 Score=33.48 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=21.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC 23 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~ 23 (300)
||.++|+.|++.|++|++.+|+.
T Consensus 21 IG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 21 IAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred hHHHHHHHHHHCCCEEEEecCch
Confidence 68999999999999999999884
No 496
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=68.73 E-value=8.7 Score=34.39 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=35.6
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC----CC-------CCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM----GV-------PTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~~~~~----g~-------~~~~~~~e~~~~adiVii~v 54 (300)
+|+.+++.|++.| ++|++.+|++.+...+... ++ ....+..+++++.|+||-+.
T Consensus 16 IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~A 82 (324)
T TIGR03589 16 FGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA 82 (324)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECc
Confidence 5899999999886 7899999987655433221 11 11112345667789988765
No 497
>PRK12743 oxidoreductase; Provisional
Probab=68.61 E-value=8.5 Score=32.90 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=22.5
Q ss_pred ChHHHHHHHHhCCCeEEEE-cCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVH-DVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~-dr~~~~~~~~ 29 (300)
+|..+++.|++.|++|.+. .++.+..+.+
T Consensus 14 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~ 43 (256)
T PRK12743 14 IGKACALLLAQQGFDIGITWHSDEEGAKET 43 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChHHHHHH
Confidence 5899999999999999876 4555555444
No 498
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=68.60 E-value=6.8 Score=32.46 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=21.0
Q ss_pred HHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 6 ASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 6 a~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+.-|+++||+|+.||.|+..++.+.+
T Consensus 45 alyLA~~G~~VtAvD~s~~al~~l~~ 70 (192)
T PF03848_consen 45 ALYLASQGFDVTAVDISPVALEKLQR 70 (192)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 56789999999999999988776643
No 499
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=68.48 E-value=6.8 Score=33.15 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=26.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++..++.
T Consensus 15 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 44 (250)
T TIGR03206 15 IGGATCRRFAEEGAKVAVFDLNREAAEKVA 44 (250)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 489999999999999999999988766553
No 500
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.47 E-value=13 Score=31.58 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=21.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC-hhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN-CNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~-~~~~~~~ 29 (300)
+|.++++.|++.|++|.+..++ ++..+.+
T Consensus 19 IG~~~a~~l~~~G~~v~~~~~~~~~~~~~l 48 (255)
T PRK06463 19 IGRAIAEAFLREGAKVAVLYNSAENEAKEL 48 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence 5899999999999999877554 4444444
Done!