BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022238
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54M40|PIGC_DICDI Putative phosphatidylinositol N-acetylglucosaminyltransferase
subunit C OS=Dictyostelium discoideum GN=pigC PE=3 SV=1
Length = 345
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 167/283 (59%), Gaps = 8/283 (2%)
Query: 12 RWRKVAYGGMQPGFEDNHTDESFLEQMVMNASVVKRDILKVMQDSVSISQYLCIVALVVL 71
+W+K Y QP + DN+TDE+FL +V NA+ +K D V+ DS ++SQ + V L +
Sbjct: 63 KWKKNLYE-KQP-YSDNYTDETFLIGLVQNANFIKYDFWTVVLDSFTVSQQITSVILFAI 120
Query: 72 VWAYTLRSSLDENSLLLLDVSLLGTGFLILVLTEGMLSLNLLFHYILNISFFITGLYVLA 131
++ ++L+ +L L+ + L G++ +++ + + + L+I +Y L+
Sbjct: 121 IFFHSLKHTLTLPFLVAMAGGFLVLGYIAIIIIDPSANFLSIRSSFLHIILLFGTVYGLS 180
Query: 132 PIYQTLTRSISSDSIWALTISLLVLHLFLHDYSGSTIKAPGALQNPTLTSCISLNASVVA 191
P+ +TLT S S D+IWALT LL+ HLF HDY G T P +SLNA++ A
Sbjct: 181 PVLRTLTNSFSDDTIWALTFILLLAHLFFHDY-GYTNNESQKFSAP-----VSLNAAIFA 234
Query: 192 SVFIASRLPSRLHVFAIMLFSLLVFLFAPLVTYCVKKYSFRLHLLFSVALMIVTLAFVHM 251
SV + SRLPS +HVF ++ +++ F P+ + +K++S LH+ +V L + +
Sbjct: 235 SVLLGSRLPSNIHVFVLISYAIETFALFPIFRHHLKRHSMELHVGLTVILCVTCSLLLLG 294
Query: 252 LHQLLFVLFLGLLVFVNVVCPYWLIRIQEYKFEINGPWDEAKL 294
+ +LL ++++G++ + VCP WLI IQ+YK EINGPWDEA +
Sbjct: 295 MSKLLALIYIGIIGTITFVCPLWLIFIQKYKNEINGPWDEASV 337
>sp|Q5PQQ4|PIGC_RAT Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
OS=Rattus norvegicus GN=Pigc PE=2 SV=1
Length = 297
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 163/301 (54%), Gaps = 33/301 (10%)
Query: 12 RWRKVAYGGMQPGFEDNHTDESFLEQMVMNASVVKRDILKVMQDSVSISQYLCIVALVVL 71
+W+KV Y QP F DN+ D+ FLE++ N K V+ +S + Q LC V + V+
Sbjct: 13 KWQKVLYE-RQP-FPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQQLCSVCVFVV 70
Query: 72 VWAYTLRSSLDENSLLLLDVSLLGTG-------FLILVLTEG----MLSLNLLFHYILNI 120
+W Y +DE LL L GTG +++ L +G S + + +
Sbjct: 71 IWWY-----MDEG--LLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADLKST 123
Query: 121 SFFITGLYVLAPIYQTLTRSISSDSIWALTISLLVLHLFLHDYSGSTIKAPGALQNPTLT 180
FIT Y +P+ +TLT S+S+D+I+A+++ +L+ HL DY + ++
Sbjct: 124 LVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANA---------AIVS 174
Query: 181 SCISLNASVVASVFIASRLPSRLHVFAIMLFSLLVFLFAPLVTYCVKKYSFRLHLLFSVA 240
S +SLN ++ ASV +ASRLP LH F ++ F++ +F P++ +K Y+ R ++ V
Sbjct: 175 STLSLNMAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYV--GVT 232
Query: 241 LMIVTLAFVHMLH--QLLFVLFLGLLVFVNVVCPYWLIRIQEYKFEINGPWDEAKLCFDI 298
L+ AF +L + +LF LL ++ +CPY+LI +Q +K I+GPWDEA++ D+
Sbjct: 233 LLFAFSAFGGLLSISGVGAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDL 292
Query: 299 T 299
+
Sbjct: 293 S 293
>sp|Q9CXR4|PIGC_MOUSE Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
OS=Mus musculus GN=Pigc PE=2 SV=1
Length = 297
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 162/301 (53%), Gaps = 33/301 (10%)
Query: 12 RWRKVAYGGMQPGFEDNHTDESFLEQMVMNASVVKRDILKVMQDSVSISQYLCIVALVVL 71
+W+KV Y QP F DN+ D+ FLE++ N K V+ +S + Q LC V + V+
Sbjct: 13 KWQKVLYE-RQP-FPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQQLCSVCVFVV 70
Query: 72 VWAYTLRSSLDENSLLLLDVSLLGTG-------FLILVLTEG----MLSLNLLFHYILNI 120
+W Y +DE LL L GTG +++ L +G S + + +
Sbjct: 71 IWWY-----MDEG--LLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADLKST 123
Query: 121 SFFITGLYVLAPIYQTLTRSISSDSIWALTISLLVLHLFLHDYSGSTIKAPGALQNPTLT 180
FIT Y +P+ +TLT S+S+D+I+A+ + +L+ HL DY + ++
Sbjct: 124 LVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANA---------AIVS 174
Query: 181 SCISLNASVVASVFIASRLPSRLHVFAIMLFSLLVFLFAPLVTYCVKKYSFRLHLLFSVA 240
S +SLN ++ ASV +ASRLP LH F ++ F++ +F P++ +K Y+ R ++ V
Sbjct: 175 STLSLNMAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYV--GVT 232
Query: 241 LMIVTLAFVHMLH--QLLFVLFLGLLVFVNVVCPYWLIRIQEYKFEINGPWDEAKLCFDI 298
L+ AF +L + +LF LL ++ +CPY+LI +Q +K I+GPWDEA++ D+
Sbjct: 233 LLFAFSAFGGLLSISAVGAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDL 292
Query: 299 T 299
+
Sbjct: 293 S 293
>sp|Q92535|PIGC_HUMAN Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
OS=Homo sapiens GN=PIGC PE=2 SV=1
Length = 297
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 162/299 (54%), Gaps = 29/299 (9%)
Query: 12 RWRKVAYGGMQPGFEDNHTDESFLEQMVMNASVVKRDILKVMQDSVSISQYLCIVALVVL 71
+W+KV Y QP F DN+ D FLE++ N K V+ +S + Q LC V + V+
Sbjct: 13 KWQKVLYE-RQP-FPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVFVV 70
Query: 72 VWAYTLRSSLDENSLLLLDVSLLGTG-------FLILVLTEG----MLSLNLLFHYILNI 120
+W Y +DE LL LLGTG +++ L +G S + + +
Sbjct: 71 IWWY-----MDEG--LLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADLKSA 123
Query: 121 SFFITGLYVLAPIYQTLTRSISSDSIWALTISLLVLHLFLHDYSGSTIKAPGALQNPTLT 180
FIT Y +P+ +TLT S+S+D+I+A+++ +L+ HL DY + ++
Sbjct: 124 LVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANA---------AIVS 174
Query: 181 SCISLNASVVASVFIASRLPSRLHVFAIMLFSLLVFLFAPLVTYCVKKYSFRLHLLFSVA 240
S +SLN ++ ASV +ASRLP LH F ++ F++ +F P++ +K + R ++ ++
Sbjct: 175 STLSLNMAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLL 234
Query: 241 LMIVTLAFVHMLHQLLFVLFLGLLVFVNVVCPYWLIRIQEYKFEINGPWDEAKLCFDIT 299
+ + + + VLF LL+ ++ +CP++LIR+Q +K I+GPWDEA++ D++
Sbjct: 235 FAFSAVGGLLSISAVGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEAEIKEDLS 293
>sp|Q3ZBX1|PIGC_BOVIN Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
OS=Bos taurus GN=PIGC PE=2 SV=1
Length = 297
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 159/299 (53%), Gaps = 29/299 (9%)
Query: 12 RWRKVAYGGMQPGFEDNHTDESFLEQMVMNASVVKRDILKVMQDSVSISQYLCIVALVVL 71
RW+KV Y QP F DN+ D FLE++ N K V+ +S + Q LC V + V+
Sbjct: 13 RWQKVLYE-RQP-FPDNYVDRRFLEELRKNIYARKYQYWAVVFESSVVIQQLCSVCVFVV 70
Query: 72 VWAYTLRSSLDENSLLLLDVSLLGTG-------FLILVLTEG----MLSLNLLFHYILNI 120
+W Y +DE LL L GTG +++ +G S + + +
Sbjct: 71 IWWY-----MDEG--LLAPQWLFGTGLASSLIGYVLFDFIDGGEGRKKSGRTRWADLKSA 123
Query: 121 SFFITGLYVLAPIYQTLTRSISSDSIWALTISLLVLHLFLHDYSGSTIKAPGALQNPTLT 180
FIT Y +P+ +TLT S+S+D+I+A+ + +L+ HL DY + ++
Sbjct: 124 LVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANA---------AIVS 174
Query: 181 SCISLNASVVASVFIASRLPSRLHVFAIMLFSLLVFLFAPLVTYCVKKYSFRLHLLFSVA 240
S +SLN ++ ASV +ASRLP LH F ++ F++ +F P++ +K + R ++ ++
Sbjct: 175 STLSLNMAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLL 234
Query: 241 LMIVTLAFVHMLHQLLFVLFLGLLVFVNVVCPYWLIRIQEYKFEINGPWDEAKLCFDIT 299
L + + + +LF LL+ ++ +CP++LIR+Q +K I+GPWDEA++ D++
Sbjct: 235 FAFSALGGLLSISAVGAILFALLLISISCLCPFYLIRLQLFKENIHGPWDEAEIKEDLS 293
>sp|O59802|GPI2_SCHPO Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gpi2 PE=3 SV=1
Length = 324
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 146/285 (51%), Gaps = 12/285 (4%)
Query: 13 WRKVAYGGMQPGFEDNHTDESFLEQMVMNASVVKRDILKVMQDSVSISQYLCIVALVVLV 72
W+KV + + + DN DESFL + N ++ D ++ DS+ +SQ+L V + V
Sbjct: 38 WKKVLW--RKQDYPDNFIDESFLNGLQRNVNIQVTDFWSLVADSLPVSQHLSSVVIFASV 95
Query: 73 WAYTLRSSLDENSLLLLDVSLLGTGFLILVLTEGMLSLNLLFHYILNIS----FFITGLY 128
+ R+ L + + F++ N F + I + L
Sbjct: 96 FVSIYRNQLSCALVGFVSNVSAVAAFILWDFVLRKPCNNRTFPNYMGIVKSCILIVLTLA 155
Query: 129 VLAPIYQTLTRSISSDSIWALTISLLVLHLFLHDYSGSTIKAPGALQNPTLTSCISLNAS 188
L+PI +LT+S S DS+WA+ + L + ++F H+Y+ TI+ L N +S NA+
Sbjct: 156 GLSPILMSLTKSTSPDSVWAIAVWLFLANVFFHEYTTETIRPHVRLHN-----SLSTNAA 210
Query: 189 VVASVFIASRLPSRLHVFAIMLFSLLVFLFAPLVTYCVKKYSFRLHLLFSVALMIVT-LA 247
+ ASV +ASRL ++VF +LF++ F P+ + +SF +L ++ L+I +A
Sbjct: 211 LSASVVLASRLEKSINVFFFILFAVHWFALFPIFRKYIHVFSFYADMLMTLVLIISAYIA 270
Query: 248 FVHMLHQLLFVLFLGLLVFVNVVCPYWLIRIQEYKFEINGPWDEA 292
+ ++ +FL L+ F++ +CP W I++Q +K EI+GPWD A
Sbjct: 271 LNAVASVVIAFVFLSLIFFISFICPIWFIKLQRFKNEIHGPWDIA 315
>sp|P46961|GPI2_YEAST Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=GPI2 PE=1 SV=2
Length = 280
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 126 GLYVLAPIYQTLTRSISSDSIWALTISLLVLHLFLHDYSGSTIKAPGALQNPTLTSCISL 185
+ L+P+ ++L+++ +SDSIW L+ L + ++F+ + S K S +S
Sbjct: 121 AMLTLSPVLKSLSKTTASDSIWTLSFWLTLWYIFVISSTKSKDKP----------SNLST 170
Query: 186 NASVVASVFIASRLPSRLHVFAIMLFSLLVFLFAPLVTYCVKKYSFRLHLLFSVALMIVT 245
N V ++SRL + + VF +L + + + P K + + + + V
Sbjct: 171 NILVALVAVLSSRLSTTIDVFCFLLICIQLNIILPTYLSVTNKVVPIISNIIVYSFLNVA 230
Query: 246 LAFVHMLHQLLFVLFLGLLVFVNVVCP---YWLIRIQEYKFEINGPWDEAKLCFD 297
L +++ML ++F + ++ V+ YW I + ++ WD D
Sbjct: 231 LGWIYML-----LIFFASVFYITVLPKWFIYWKINYHKRDNDLLSTWDARTPILD 280
>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1)
GN=rep PE=3 SV=1
Length = 7182
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 174 LQNPTLTSCISLNASVVASVFIASRLPSRLHVFAIML---FSLLVFLFAPLVTYCVKKYS 230
L+ P +++ +S+N S RL R+ + A ML ++L + P CVK Y
Sbjct: 6281 LEYPIISNEVSINTSC--------RLLQRVMLKAAMLCNRYNLCYDIGNPKGLACVKDYE 6332
Query: 231 FRLHLLFSVALMIVTLAFVHMLHQLLFVLFLGLLVFVNVVCPYWLIRIQEY 281
F+ + F VA + L +V+ +H+ F + +C +W + +Y
Sbjct: 6333 FKFYDAFPVAKSVKQLFYVYDVHK---------DNFKDGLCMFWNCNVDKY 6374
>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5)
GN=rep PE=3 SV=1
Length = 7132
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 174 LQNPTLTSCISLNASVVASVFIASRLPSRLHVFAIML---FSLLVFLFAPLVTYCVKKYS 230
L+ P +++ +S+N S RL R+ + A ML ++L + P CVK Y
Sbjct: 6231 LEYPIISNEVSINTSC--------RLLQRVMLKAAMLCNRYNLCYDIGNPKGLACVKDYE 6282
Query: 231 FRLHLLFSVALMIVTLAFVHMLHQLLFVLFLGLLVFVNVVCPYWLIRIQEY 281
F+ + F VA + L +V+ +H+ F + +C +W + +Y
Sbjct: 6283 FKFYDAFPVAKSVKQLFYVYDVHK---------DNFKDGLCMFWNCNVDKY 6324
>sp|Q2NEA8|GLYA_METST Serine hydroxymethyltransferase OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=glyA PE=3 SV=1
Length = 422
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 2 EDNSSSPNPPRWRKVAYGGMQPGFEDNHTDE--SFLEQMVMNASVVKRDILKVMQDSVSI 59
+D + S NP R GF+++ D+ F++Q+VM+ VK D+ + MQD ++
Sbjct: 347 DDVNDSDNPSGIRMGTQELTHRGFKEDEMDQVAEFIKQVVMDKKDVKEDVTEFMQDYTTV 406
>sp|Q8GZA6|PP113_ARATH Pentatricopeptide repeat-containing protein At1g71210
OS=Arabidopsis thaliana GN=At1g71210 PE=2 SV=1
Length = 879
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 32 ESFLEQMVMNASVVKR--DILKVMQDSVSISQYLCIVALVVLVWAYTLRSSLDE-----N 84
+SF +++NA V ++ D V+ D +S+ ++C V +LV + + LDE
Sbjct: 216 DSFGYHVLLNALVEEKCFDSFDVIFDQISVRGFVCAVTHSILVKKFCKQGKLDEAEDYLR 275
Query: 85 SLLLLDVSLLGTGFLILV 102
+LL D + G+G ILV
Sbjct: 276 ALLPNDPAGCGSGLGILV 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,467,780
Number of Sequences: 539616
Number of extensions: 3625744
Number of successful extensions: 11573
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 11531
Number of HSP's gapped (non-prelim): 88
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)