Query 022238
Match_columns 300
No_of_seqs 117 out of 211
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 16:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022238.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022238hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nh2b_ a.32.1.1 (B:) Large ch 21.2 3.4 0.00025 26.1 -2.2 20 21-40 19-38 (46)
2 d1nvpb_ a.32.1.1 (B:) Large ch 14.4 5.8 0.00042 24.6 -2.3 20 21-40 17-36 (43)
3 d1d1da1 a.28.3.1 (A:151-230) R 9.2 16 0.0011 25.3 -1.7 29 12-43 2-30 (80)
4 d1a8oa_ a.28.3.1 (A:) HIV caps 9.1 17 0.0012 24.3 -1.5 21 20-42 6-26 (70)
5 d2eiaa1 a.28.3.1 (A:148-222) E 8.6 18 0.0013 24.5 -1.5 21 20-42 9-29 (75)
6 d1bf2a1 b.1.18.2 (A:1-162) Iso 8.4 34 0.0024 26.0 -0.2 14 279-292 75-88 (162)
7 d1qrjb1 a.28.3.1 (B:131-214) H 8.0 20 0.0014 25.0 -1.6 21 20-42 9-29 (84)
8 d2glia5 g.37.1.1 (A:229-257) F 7.2 87 0.0064 17.3 1.3 19 23-41 8-26 (29)
9 d1ipaa1 c.116.1.1 (A:106-263) 7.1 66 0.0048 23.7 1.0 18 179-196 133-150 (158)
10 d2vlqa1 a.28.2.1 (A:4-84) ImmE 7.0 85 0.0062 21.5 1.5 36 28-63 6-44 (81)
No 1
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.17 E-value=3.4 Score=26.07 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=17.8
Q ss_pred CCCCCCCCCCChhhHHHHHh
Q 022238 21 MQPGFEDNHTDESFLEQMVM 40 (300)
Q Consensus 21 ~kQ~yPDNYtD~sFL~~L~~ 40 (300)
.|++|.||-+|++=|++||+
T Consensus 19 vR~dF~~~Gvde~vL~eLk~ 38 (46)
T d1nh2b_ 19 VREDFENAGIDEQTLQDLKN 38 (46)
T ss_dssp THHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHH
Confidence 57889999999999999984
No 2
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.35 E-value=5.8 Score=24.61 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.5
Q ss_pred CCCCCCCCCCChhhHHHHHh
Q 022238 21 MQPGFEDNHTDESFLEQMVM 40 (300)
Q Consensus 21 ~kQ~yPDNYtD~sFL~~L~~ 40 (300)
.||+|.||=+|++=|++||+
T Consensus 17 vR~~F~~~GvDe~vL~eLk~ 36 (43)
T d1nvpb_ 17 VRDIFLDDGVDEQVLMELKT 36 (43)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHH
Confidence 47889999999999999984
No 3
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=9.20 E-value=16 Score=25.34 Aligned_cols=29 Identities=14% Similarity=0.379 Sum_probs=18.8
Q ss_pred CccccccCCCCCCCCCCCCChhhHHHHHhcCC
Q 022238 12 RWRKVAYGGMQPGFEDNHTDESFLEQMVMNAS 43 (300)
Q Consensus 12 ~WkKvLy~~~kQ~yPDNYtD~sFL~~L~~N~~ 43 (300)
||-++-= |-|.||.| |+|. |++.++++..
T Consensus 2 p~t~IkQ-GpkEpf~d-fVdR-l~~al~~~~~ 30 (80)
T d1d1da1 2 PWADITQ-GPSESFVD-FANR-LIKAVEGSDL 30 (80)
T ss_dssp TTTSCCC-CSSSCHHH-HHHH-HHHHHHTSSC
T ss_pred Ccccccc-CCCccHHH-HHHH-HHHHHHHhcC
Confidence 4444332 45678888 8885 8888887643
No 4
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=9.14 E-value=17 Score=24.32 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCChhhHHHHHhcC
Q 022238 20 GMQPGFEDNHTDESFLEQMVMNA 42 (300)
Q Consensus 20 ~~kQ~yPDNYtD~sFL~~L~~N~ 42 (300)
|-|.||.| |+|. |++.+++..
T Consensus 6 gpkEpf~d-fV~R-l~~~~~~~~ 26 (70)
T d1a8oa_ 6 GPKEPFRD-YVDR-FYKTLRAEQ 26 (70)
T ss_dssp CTTSCHHH-HHHH-HHHHHHTTT
T ss_pred CCCCCHHH-HHHH-HHHHHHhhc
Confidence 45677877 7775 777777654
No 5
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=8.62 E-value=18 Score=24.51 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCChhhHHHHHhcC
Q 022238 20 GMQPGFEDNHTDESFLEQMVMNA 42 (300)
Q Consensus 20 ~~kQ~yPDNYtD~sFL~~L~~N~ 42 (300)
|-|.||.| |+| .|++.+++..
T Consensus 9 GpkEpf~d-fVd-Rl~~a~~~~~ 29 (75)
T d2eiaa1 9 GAKEPYPE-FVD-RLLSQIKSEG 29 (75)
T ss_dssp CTTCCHHH-HHH-HHHHHHHHTT
T ss_pred CCCCCHHH-HHH-HHHHHHHhhc
Confidence 34566776 666 4777777653
No 6
>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}
Probab=8.44 E-value=34 Score=25.97 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=11.6
Q ss_pred hccCCcccCCcccc
Q 022238 279 QEYKFEINGPWDEA 292 (300)
Q Consensus 279 q~yK~~I~GPWD~A 292 (300)
++|+-++.||||+.
T Consensus 75 ~~Y~yrv~Gp~~p~ 88 (162)
T d1bf2a1 75 VYYGYRAWGPNWPY 88 (162)
T ss_dssp CEEEEEEEBTTBCC
T ss_pred cEEEEEEccccCcc
Confidence 56889999998873
No 7
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=7.99 E-value=20 Score=25.00 Aligned_cols=21 Identities=5% Similarity=0.164 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCChhhHHHHHhcC
Q 022238 20 GMQPGFEDNHTDESFLEQMVMNA 42 (300)
Q Consensus 20 ~~kQ~yPDNYtD~sFL~~L~~N~ 42 (300)
|-|.||.| |+|. |++.+++..
T Consensus 9 GpkEpf~d-fVdR-l~~a~~~~~ 29 (84)
T d1qrjb1 9 GLEEPYHA-FVER-LNIALDNGL 29 (84)
T ss_dssp CTTSCHHH-HHHH-HHHHHHTTC
T ss_pred CCCCcHHH-HHHH-HHHHHHhhc
Confidence 34556666 6654 777777653
No 8
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.20 E-value=87 Score=17.29 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=12.5
Q ss_pred CCCCCCCCChhhHHHHHhc
Q 022238 23 PGFEDNHTDESFLEQMVMN 41 (300)
Q Consensus 23 Q~yPDNYtD~sFL~~L~~N 41 (300)
++-...|||||-|..=.+|
T Consensus 8 ~gC~K~YtdPSSLRKH~k~ 26 (29)
T d2glia5 8 PGCTKRYTDPSSLRKHVKT 26 (29)
T ss_dssp TTTCCEESSHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHh
Confidence 3456789999876544444
No 9
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.10 E-value=66 Score=23.74 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=14.2
Q ss_pred cccchhhhHHHHHHHHHh
Q 022238 179 LTSCISLNASVVASVFIA 196 (300)
Q Consensus 179 ~~~~lSlNaal~asvvLA 196 (300)
....=|||.|.+++|+|-
T Consensus 133 ~g~~~SLNvs~A~aI~ly 150 (158)
T d1ipaa1 133 QGQADSLNVSVSAALLLY 150 (158)
T ss_dssp CSSCCCCCHHHHHHHHHH
T ss_pred CCCCCeEeHHHHHHHHHH
Confidence 345568999999999874
No 10
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=7.04 E-value=85 Score=21.50 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=21.6
Q ss_pred CCCChhhHHHHHh--cCCcccccH-HHHHHHHHHHHHHH
Q 022238 28 NHTDESFLEQMVM--NASVVKRDI-LKVMQDSVSISQYL 63 (300)
Q Consensus 28 NYtD~sFL~~L~~--N~~v~~~~y-~~~v~~~~~v~q~i 63 (300)
.||...||+-++. |.+...-++ -+++..+..|++|=
T Consensus 6 DYTE~EFl~fl~~i~~~~~~te~~~d~l~~hF~~iteHP 44 (81)
T d2vlqa1 6 DYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHP 44 (81)
T ss_dssp GSCHHHHHHHHHHHHHTCSSSHHHHHHHHHHHHHHHCCT
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHccCC
Confidence 4888888887773 444332233 45666666666664
Done!