Query 022239
Match_columns 300
No_of_seqs 121 out of 131
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:04:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4827 Uncharacterized conser 100.0 2.3E-62 5.1E-67 439.0 8.0 258 24-284 9-277 (279)
2 PRK13664 hypothetical protein; 87.8 0.53 1.2E-05 35.5 2.7 22 245-266 2-25 (62)
3 PF13980 UPF0370: Uncharacteri 87.7 0.54 1.2E-05 35.6 2.8 21 245-265 2-23 (63)
4 PF10831 DUF2556: Protein of u 80.4 1.2 2.5E-05 32.5 1.8 10 247-256 2-11 (53)
5 KOG4827 Uncharacterized conser 73.7 0.74 1.6E-05 42.8 -1.0 107 78-191 23-142 (279)
6 PF07172 GRP: Glycine rich pro 68.1 3.9 8.5E-05 33.3 2.1 16 8-23 6-21 (95)
7 PRK10862 SoxR reducing system 52.3 13 0.00029 32.4 2.8 31 240-270 68-100 (154)
8 COG1930 CbiN ABC-type cobalt t 35.1 34 0.00074 28.2 2.5 10 35-44 27-36 (97)
9 PF11874 DUF3394: Domain of un 34.5 19 0.00042 32.7 1.1 16 247-262 156-171 (183)
10 PF04246 RseC_MucC: Positive r 34.3 38 0.00083 28.3 2.8 24 242-265 64-87 (135)
11 PF12534 DUF3733: Leucine-rich 32.8 46 0.00099 25.6 2.7 24 243-267 20-43 (65)
12 PF13260 DUF4051: Protein of u 31.3 38 0.00082 24.9 1.9 11 246-256 2-12 (54)
13 PHA02781 hypothetical protein; 29.4 59 0.0013 25.2 2.8 19 170-188 5-25 (78)
14 PRK10053 hypothetical protein; 27.6 51 0.0011 28.5 2.4 7 25-31 23-29 (130)
15 TIGR02052 MerP mercuric transp 26.7 29 0.00064 24.9 0.7 13 1-13 1-13 (92)
16 PF00957 Synaptobrevin: Synapt 26.1 62 0.0013 25.1 2.5 19 242-260 58-76 (89)
17 PF06143 Baculo_11_kDa: Baculo 25.4 71 0.0015 25.8 2.7 22 241-262 27-48 (84)
18 PF15050 SCIMP: SCIMP protein 23.8 71 0.0015 27.7 2.6 20 245-264 2-21 (133)
19 PF14143 YrhC: YrhC-like prote 23.4 90 0.0019 24.5 2.9 23 239-262 30-52 (72)
20 PF13721 SecD-TM1: SecD export 23.0 67 0.0015 26.2 2.2 24 251-274 7-30 (101)
21 PF14038 YqzE: YqzE-like prote 22.3 22 0.00048 26.4 -0.6 22 241-262 32-53 (54)
22 PF08510 PIG-P: PIG-P; InterP 21.5 72 0.0016 26.8 2.2 16 248-263 42-57 (126)
23 TIGR03300 assembly_YfgL outer 21.4 64 0.0014 30.7 2.1 10 22-31 14-23 (377)
24 PF15240 Pro-rich: Proline-ric 21.4 59 0.0013 29.6 1.8 19 12-31 3-21 (179)
25 smart00831 Cation_ATPase_N Cat 20.6 1.4E+02 0.0031 21.2 3.4 22 240-261 30-52 (64)
26 COG2372 CopC Uncharacterized p 20.3 3.4E+02 0.0074 23.5 6.1 35 77-116 89-123 (127)
27 PF11669 WBP-1: WW domain-bind 20.2 89 0.0019 25.6 2.4 18 245-262 16-33 (102)
No 1
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.3e-62 Score=439.05 Aligned_cols=258 Identities=53% Similarity=0.864 Sum_probs=240.8
Q ss_pred ccccccccccccccccccccCCCCCCC------CCCCCCCCCcccccccCCCCCCCCCceeEEEEEecCCCCceec-cce
Q 022239 24 SLAFESDELLVDDEEFGLEGGSKPQIK------PHEPAPTRSTTTTTRRKVSDQDSDSKIQFSLEHAFGDSDFVPA-GTF 96 (300)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~e~d~~i~~~LEHsl~d~~Ft~R-G~i 96 (300)
+.+|++||+++||+||||+|+ .+... +++|....+..+.|++++.-++.|++.+|+|||+|||.+|.+. |++
T Consensus 9 ~IAf~~de~ll~ddefgLEga-k~~~TdlY~~~Ssspqqqqq~~~iR~~~~dpTdldkk~QftlEhaFGdkdF~~anGtf 87 (279)
T KOG4827|consen 9 IIAFILDEFLLADDEFGLEGA-KNEFTDLYPLGSSSPQQQQQIEMIRAFDGDPTDLDKKAQFTLEHAFGDKDFEAANGTF 87 (279)
T ss_pred HHHHhccceeecccccccccc-ccccccccccCCCChhhhhhhhhhhhhcCCcccccchhhhhHHhhcccccccccccee
Confidence 379999999999999999999 66554 2223233667778888899999999999999999999999999 999
Q ss_pred eeccccCCCCCccceeeeeeccCCCHHHHHHHHHHhcCCCcEEEEeCCCccCCCCCceEEeeecccccccCC--CCceEE
Q 022239 97 SARLKTSSHGGQTLTKLRFSRNAFTGEDKEKFEKLLQDDDFYRIRLPSNTVSPPGRDYIISSVKARCLPREG--LDEHFV 174 (300)
Q Consensus 97 s~~lk~s~~g~~t~~sl~~sq~~LS~~e~~kLk~la~~dg~YrIRvps~v~~p~g~~~v~SSVkAC~L~~s~--L~d~l~ 174 (300)
++|+|+|++|..+..+++++.+.+..+|++.|+.+...+.||+||+++.+.-|+|+.+|+.+|.++|+.+++ ++|++.
T Consensus 88 SaR~ks~shgGkn~~klrf~~~dF~aeekdaF~n~lkgddf~kiqL~s~~i~PpgrefviasV~aRc~p~DGky~dE~fi 167 (279)
T KOG4827|consen 88 SARAKSSSHGGKNFLKLRFDPCDFLAEEKDAFHNFLKGDDFEKIQLHSLTIFPPGREFVIASVAARCDPEDGKYHDEAFI 167 (279)
T ss_pred EEEeecccCCCcceeeeccChhhhhhhHHHHHHHHHhcccHhhhccccceecCCcchhhhhhhheecCcccCccccceee
Confidence 999999999999999999999999999999999999999999999999998999999999999999999999 999999
Q ss_pred EEeeCCeEEEEEEeec-CCCCCCcccCCCCcccceeeEEEecCCCCCCcchhhhhhcc-cCCCCCcCCCCCcchhhhhhH
Q 022239 175 IHMEGVNILAVNYGAF-GACSYPRQLKLPHKWSFNSHTVLKNSEQAPRAPIFAEEVLG-ENGEGEIIPPPERSFWAKYWM 252 (300)
Q Consensus 175 lhlD~GnVigVsy~~~-g~C~~~~~~~~~~~~~F~ttV~v~~~~~aP~Ta~fiqk~E~-E~~ege~~p~~erSFlaKYWm 252 (300)
+|..+.||++++|.+| |.|.||++++++.+|+||++++....+|+|+|+.|.|+||+ |+.|||.+++||||||+||||
T Consensus 168 ~h~egANiLa~s~GsPkGaCqyprqlklpakwsfnsHti~eSse~aP~T~~Fteei~g~en~ege~~~~~eRSF~AKYWM 247 (279)
T KOG4827|consen 168 CHDEGANILASSQGSPKGACQYPRQLKLPAKWSFNSHTIGESSEPAPDTAAFTEEIEGEENAEGEGADADERSFLAKYWM 247 (279)
T ss_pred eeccCcceeeeccCCCCccccCchhhcCccccccccceeccccCCCCCcHHHHHHHhccccccccCCCCcchhHHHHHHH
Confidence 9999999999999877 89999999999999999999999999999999999999999 566789999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCccCcCCCCCCCc
Q 022239 253 YLIPLGLIVINAVTQAMNMPEEGVQGGGQTQQ 284 (300)
Q Consensus 253 YIvP~vl~v~n~is~a~n~PE~~~~~~gq~~~ 284 (300)
||||+.++|||++.+|.||.|+ +++||+|+
T Consensus 248 YiiPlglVVl~AV~qasnmAee--Pa~G~aG~ 277 (279)
T KOG4827|consen 248 YIIPLGLVVLFAVIQASNMAEE--PAAGAAGA 277 (279)
T ss_pred hhccchhhhhhhhhhccccccC--cccccccc
Confidence 9999999999999999999999 99999985
No 2
>PRK13664 hypothetical protein; Provisional
Probab=87.80 E-value=0.53 Score=35.47 Aligned_cols=22 Identities=32% Similarity=0.750 Sum_probs=14.3
Q ss_pred chhhhhhHHHHHHHH--HHHHHhh
Q 022239 245 SFWAKYWMYLIPLGL--IVINAVT 266 (300)
Q Consensus 245 SFlaKYWmYIvP~vl--~v~n~is 266 (300)
.|+++||+.+|-+++ +++|+|-
T Consensus 2 ~WLadyWWilill~lvG~i~N~iK 25 (62)
T PRK13664 2 DWLAKYWWILVLVFLVGVLLNVIK 25 (62)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999443333 4566553
No 3
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=87.70 E-value=0.54 Score=35.57 Aligned_cols=21 Identities=24% Similarity=0.737 Sum_probs=14.3
Q ss_pred chhhhhhHHHHHHHH-HHHHHh
Q 022239 245 SFWAKYWMYLIPLGL-IVINAV 265 (300)
Q Consensus 245 SFlaKYWmYIvP~vl-~v~n~i 265 (300)
.||+.||+.|+-+++ +++|+|
T Consensus 2 ~WladYWWiiLl~lvG~i~n~i 23 (63)
T PF13980_consen 2 HWLADYWWIILLILVGMIINGI 23 (63)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999764443 455554
No 4
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=80.41 E-value=1.2 Score=32.48 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=8.4
Q ss_pred hhhhhHHHHH
Q 022239 247 WAKYWMYLIP 256 (300)
Q Consensus 247 laKYWmYIvP 256 (300)
+.||||.||=
T Consensus 2 irky~wlvvf 11 (53)
T PF10831_consen 2 IRKYWWLVVF 11 (53)
T ss_pred cceehhHHHH
Confidence 6899999873
No 5
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.70 E-value=0.74 Score=42.78 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=64.7
Q ss_pred eEEEEEecCCC-Cceeccc--------eeeccccCCCCCccceeeeeeccCCCHHHHHHHHHHhcCCCcEEEEeCCCccC
Q 022239 78 QFSLEHAFGDS-DFVPAGT--------FSARLKTSSHGGQTLTKLRFSRNAFTGEDKEKFEKLLQDDDFYRIRLPSNTVS 148 (300)
Q Consensus 78 ~~~LEHsl~d~-~Ft~RG~--------is~~lk~s~~g~~t~~sl~~sq~~LS~~e~~kLk~la~~dg~YrIRvps~v~~ 148 (300)
.|.||.+.+.. +-++.|+ |. +-+..+|..| ...+-.|-+|-..+.+++ ..++||.|.+|+++ ..
T Consensus 23 efgLEgak~~~TdlY~~~Ssspqqqqq~~--~iR~~~~dpT-dldkk~QftlEhaFGdkd--F~~anGtfSaR~ks--~s 95 (279)
T KOG4827|consen 23 EFGLEGAKNEFTDLYPLGSSSPQQQQQIE--MIRAFDGDPT-DLDKKAQFTLEHAFGDKD--FEAANGTFSARAKS--SS 95 (279)
T ss_pred cccccccccccccccccCCCChhhhhhhh--hhhhhcCCcc-cccchhhhhHHhhccccc--cccccceeEEEeec--cc
Confidence 46788888765 6777777 33 4444555443 111112333333334444 34789999999866 34
Q ss_pred CCCCceEEeeecccccccC--CCCceEEEEeeC--CeEEEEEEeecC
Q 022239 149 PPGRDYIISSVKARCLPRE--GLDEHFVIHMEG--VNILAVNYGAFG 191 (300)
Q Consensus 149 p~g~~~v~SSVkAC~L~~s--~L~d~l~lhlD~--GnVigVsy~~~g 191 (300)
..|+.+...-...|.++.+ ++.++|+...|- ..+.++.++.||
T Consensus 96 hgGkn~~klrf~~~dF~aeekdaF~n~lkgddf~kiqL~s~~i~Ppg 142 (279)
T KOG4827|consen 96 HGGKNFLKLRFDPCDFLAEEKDAFHNFLKGDDFEKIQLHSLTIFPPG 142 (279)
T ss_pred CCCcceeeeccChhhhhhhHHHHHHHHHhcccHhhhccccceecCCc
Confidence 4456665555788888877 666777777663 666666666443
No 6
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=68.06 E-value=3.9 Score=33.32 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhc
Q 022239 8 FALFLFFFSLLLFCHS 23 (300)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (300)
|.||+++|+++||++|
T Consensus 6 ~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 6 FLLLGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666677777676666
No 7
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=52.25 E-value=13 Score=32.43 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=22.5
Q ss_pred CCCCcchh-hhhhHHHHHHHHHHHH-HhhhcCC
Q 022239 240 PPPERSFW-AKYWMYLIPLGLIVIN-AVTQAMN 270 (300)
Q Consensus 240 p~~erSFl-aKYWmYIvP~vl~v~n-~is~a~n 270 (300)
.-+|++++ +=.|+|++|++.+++- ++.+...
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~~~~~ 100 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALFQLLF 100 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35888888 7899999999988753 3444343
No 8
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=35.10 E-value=34 Score=28.19 Aligned_cols=10 Identities=50% Similarity=0.780 Sum_probs=7.5
Q ss_pred cccccccccC
Q 022239 35 DDEEFGLEGG 44 (300)
Q Consensus 35 ~~~~~~~~~~ 44 (300)
+|.|||..-+
T Consensus 27 ~~ge~gGaD~ 36 (97)
T COG1930 27 TDGEFGGADG 36 (97)
T ss_pred ccccccCCcc
Confidence 6889987655
No 9
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=34.55 E-value=19 Score=32.75 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=11.1
Q ss_pred hhhhhHHHHHHHHHHH
Q 022239 247 WAKYWMYLIPLGLIVI 262 (300)
Q Consensus 247 laKYWmYIvP~vl~v~ 262 (300)
..|+||||-.++|+.+
T Consensus 156 p~ke~~yiPAlLLL~l 171 (183)
T PF11874_consen 156 PPKEWVYIPALLLLGL 171 (183)
T ss_pred CCcceEeHHHHHHHHH
Confidence 4689999765555555
No 10
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=34.27 E-value=38 Score=28.32 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=17.5
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHh
Q 022239 242 PERSFWAKYWMYLIPLGLIVINAV 265 (300)
Q Consensus 242 ~erSFlaKYWmYIvP~vl~v~n~i 265 (300)
+..-+.+-.|+|++|+++|++-++
T Consensus 64 ~~~~~~aa~l~Y~lPll~li~g~~ 87 (135)
T PF04246_consen 64 ESSLLKAAFLVYLLPLLALIAGAV 87 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 334445999999999988866443
No 11
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=32.80 E-value=46 Score=25.59 Aligned_cols=24 Identities=21% Similarity=0.606 Sum_probs=16.6
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhhh
Q 022239 243 ERSFWAKYWMYLIPLGLIVINAVTQ 267 (300)
Q Consensus 243 erSFlaKYWmYIvP~vl~v~n~is~ 267 (300)
-|-||.||+=||+-+.+++. ++++
T Consensus 20 lkPWwdvf~~YL~~~mlmi~-v~~~ 43 (65)
T PF12534_consen 20 LKPWWDVFFDYLVLLMLMIF-VFGG 43 (65)
T ss_pred HccHHHHHHHHHHHHHHHHH-HHHh
Confidence 46799999999875555544 2443
No 12
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=31.32 E-value=38 Score=24.88 Aligned_cols=11 Identities=55% Similarity=1.020 Sum_probs=7.5
Q ss_pred hhhhhhHHHHH
Q 022239 246 FWAKYWMYLIP 256 (300)
Q Consensus 246 FlaKYWmYIvP 256 (300)
|++=||..+|-
T Consensus 2 fiawywivli~ 12 (54)
T PF13260_consen 2 FIAWYWIVLIV 12 (54)
T ss_pred hHHHHHHHHHH
Confidence 78878866543
No 13
>PHA02781 hypothetical protein; Provisional
Probab=29.44 E-value=59 Score=25.17 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=17.0
Q ss_pred CceEEEEeeC--CeEEEEEEe
Q 022239 170 DEHFVIHMEG--VNILAVNYG 188 (300)
Q Consensus 170 ~d~l~lhlD~--GnVigVsy~ 188 (300)
.|.|.|.+|+ |||+.++|.
T Consensus 5 mdkikitvdskignvvtisyn 25 (78)
T PHA02781 5 MDKIKITVDSKIGNVVTISYN 25 (78)
T ss_pred cceEEEEeecccCcEEEEEee
Confidence 4789999997 999999996
No 14
>PRK10053 hypothetical protein; Provisional
Probab=27.61 E-value=51 Score=28.46 Aligned_cols=7 Identities=14% Similarity=0.202 Sum_probs=4.6
Q ss_pred ccccccc
Q 022239 25 LAFESDE 31 (300)
Q Consensus 25 ~~~~~~~ 31 (300)
.||+.++
T Consensus 23 gGf~~~~ 29 (130)
T PRK10053 23 GGLKQDA 29 (130)
T ss_pred CCCCCCC
Confidence 5787664
No 15
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=26.68 E-value=29 Score=24.93 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=8.3
Q ss_pred CcccchhHHHHHH
Q 022239 1 MKKKLPLFALFLF 13 (300)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (300)
||+++-||+||++
T Consensus 1 ~~~~~~~~~~~~~ 13 (92)
T TIGR02052 1 MKKLATLLALFVL 13 (92)
T ss_pred ChhHHHHHHHHHH
Confidence 7777766665443
No 16
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=26.15 E-value=62 Score=25.06 Aligned_cols=19 Identities=21% Similarity=0.744 Sum_probs=13.4
Q ss_pred CCcchhhhhhHHHHHHHHH
Q 022239 242 PERSFWAKYWMYLIPLGLI 260 (300)
Q Consensus 242 ~erSFlaKYWmYIvP~vl~ 260 (300)
..+-||++|.+|++-++++
T Consensus 58 ~r~~~~~~~k~~~i~~~iv 76 (89)
T PF00957_consen 58 KRKMWWRNYKLYIIIIIIV 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHhhh
Confidence 4677999998887654443
No 17
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=25.44 E-value=71 Score=25.78 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=16.5
Q ss_pred CCCcchhhhhhHHHHHHHHHHH
Q 022239 241 PPERSFWAKYWMYLIPLGLIVI 262 (300)
Q Consensus 241 ~~erSFlaKYWmYIvP~vl~v~ 262 (300)
..||+|+.-|=|.|--+++|+|
T Consensus 27 srN~sfirdFvLVic~~lVfVi 48 (84)
T PF06143_consen 27 SRNRSFIRDFVLVICCFLVFVI 48 (84)
T ss_pred HhChHHHHHHHHHHHHHHHHHH
Confidence 4799999999997655555444
No 18
>PF15050 SCIMP: SCIMP protein
Probab=23.77 E-value=71 Score=27.65 Aligned_cols=20 Identities=15% Similarity=0.689 Sum_probs=16.1
Q ss_pred chhhhhhHHHHHHHHHHHHH
Q 022239 245 SFWAKYWMYLIPLGLIVINA 264 (300)
Q Consensus 245 SFlaKYWmYIvP~vl~v~n~ 264 (300)
+||.+|.|.|+.+.|+++.+
T Consensus 2 ~WWr~nFWiiLAVaII~vS~ 21 (133)
T PF15050_consen 2 SWWRDNFWIILAVAIILVSV 21 (133)
T ss_pred chHHhchHHHHHHHHHHHHH
Confidence 68999999999888776543
No 19
>PF14143 YrhC: YrhC-like protein
Probab=23.44 E-value=90 Score=24.46 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=16.6
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHH
Q 022239 239 IPPPERSFWAKYWMYLIPLGLIVI 262 (300)
Q Consensus 239 ~p~~erSFlaKYWmYIvP~vl~v~ 262 (300)
-|...++=.+||||+.. ++++++
T Consensus 30 iP~~~~~~~~~~~m~~~-~~~~l~ 52 (72)
T PF14143_consen 30 IPIGAKETAQKYIMMGA-ICIFLA 52 (72)
T ss_pred CCccchhHHHHHHHHHH-HHHHHH
Confidence 46678888999999954 444444
No 20
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=22.97 E-value=67 Score=26.17 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcc
Q 022239 251 WMYLIPLGLIVINAVTQAMNMPEE 274 (300)
Q Consensus 251 WmYIvP~vl~v~n~is~a~n~PE~ 274 (300)
|-|++-++++++++++...|+--|
T Consensus 7 WKyllil~vl~~~~lyALPnlyge 30 (101)
T PF13721_consen 7 WKYLLILVVLLLGALYALPNLYGE 30 (101)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCC
Confidence 444444444445556666776433
No 21
>PF14038 YqzE: YqzE-like protein
Probab=22.27 E-value=22 Score=26.43 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=17.0
Q ss_pred CCCcchhhhhhHHHHHHHHHHH
Q 022239 241 PPERSFWAKYWMYLIPLGLIVI 262 (300)
Q Consensus 241 ~~erSFlaKYWmYIvP~vl~v~ 262 (300)
.++|.=|.-.|.=|||+.+.++
T Consensus 32 K~~k~p~~~rWFG~iP~~~~l~ 53 (54)
T PF14038_consen 32 KEEKEPFSYRWFGMIPYSLSLW 53 (54)
T ss_pred HhcCCcHHHHHHhHHHHHHHHH
Confidence 3566667888999999988765
No 22
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=21.53 E-value=72 Score=26.82 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHHH
Q 022239 248 AKYWMYLIPLGLIVIN 263 (300)
Q Consensus 248 aKYWmYIvP~vl~v~n 263 (300)
+|||--.+|..+++.+
T Consensus 42 ~kyWAlaiP~~~l~~~ 57 (126)
T PF08510_consen 42 DKYWALAIPSWLLMAM 57 (126)
T ss_pred cchHHHHHHHHHHHHH
Confidence 7999999998877654
No 23
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=21.38 E-value=64 Score=30.66 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=7.2
Q ss_pred hccccccccc
Q 022239 22 HSSLAFESDE 31 (300)
Q Consensus 22 ~~~~~~~~~~ 31 (300)
+.+++||+|+
T Consensus 14 ~~~~~~~~~~ 23 (377)
T TIGR03300 14 SGCSWFSSKD 23 (377)
T ss_pred hcccCCCCCC
Confidence 3337999986
No 24
>PF15240 Pro-rich: Proline-rich
Probab=21.36 E-value=59 Score=29.64 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhccccccccc
Q 022239 12 LFFFSLLLFCHSSLAFESDE 31 (300)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (300)
|+||+..||+.| +|=..||
T Consensus 3 lVLLSvALLALS-SAQ~~dE 21 (179)
T PF15240_consen 3 LVLLSVALLALS-SAQSTDE 21 (179)
T ss_pred hHHHHHHHHHhh-hcccccc
Confidence 344444444445 4555555
No 25
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=20.60 E-value=1.4e+02 Score=21.23 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=15.0
Q ss_pred CCCCcchhhhhhHHHH-HHHHHH
Q 022239 240 PPPERSFWAKYWMYLI-PLGLIV 261 (300)
Q Consensus 240 p~~erSFlaKYWmYIv-P~vl~v 261 (300)
+++.+|||.++|-.+. |+++++
T Consensus 30 ~~~~~s~~~~~l~~~~~p~~~iL 52 (64)
T smart00831 30 PPKKRSPLLRFLRQFHNPLIYIL 52 (64)
T ss_pred CCCCCCHHHHHHHHHHhHHHHHH
Confidence 3456899999998764 444443
No 26
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=20.35 E-value=3.4e+02 Score=23.50 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=25.4
Q ss_pred eeEEEEEecCCCCceeccceeeccccCCCCCccceeeeee
Q 022239 77 IQFSLEHAFGDSDFVPAGTFSARLKTSSHGGQTLTKLRFS 116 (300)
Q Consensus 77 i~~~LEHsl~d~~Ft~RG~is~~lk~s~~g~~t~~sl~~s 116 (300)
+.++|++.|..+.|+.-=.+. +.||+.+.++++++
T Consensus 89 l~v~l~~~L~aG~Y~v~Wrvv-----S~DGH~v~G~~sFs 123 (127)
T COG2372 89 LEVPLPQPLKAGVYTVDWRVV-----SSDGHVVKGSISFS 123 (127)
T ss_pred EEecCcccCCCCcEEEEEEEE-----ecCCcEeccEEEEE
Confidence 889999999865554433333 78898888888775
No 27
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=20.23 E-value=89 Score=25.62 Aligned_cols=18 Identities=22% Similarity=0.735 Sum_probs=12.7
Q ss_pred chhhhhhHHHHHHHHHHH
Q 022239 245 SFWAKYWMYLIPLGLIVI 262 (300)
Q Consensus 245 SFlaKYWmYIvP~vl~v~ 262 (300)
+|+.+.|+|.+-++|++|
T Consensus 16 ~~~~~~w~FWlv~~liil 33 (102)
T PF11669_consen 16 SYYYELWYFWLVWVLIIL 33 (102)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 678888888875455554
Done!