Query 022239
Match_columns 300
No_of_seqs 121 out of 131
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:13:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kog_A Vesicle-associated memb 14.9 75 0.0026 25.6 2.0 15 242-256 88-102 (119)
2 1cn3_F Fragment of coat protei 13.3 55 0.0019 20.1 0.6 7 287-293 10-16 (29)
3 1ldd_A APC2WHB, anaphase promo 13.0 82 0.0028 23.6 1.6 10 247-256 6-15 (74)
4 2rpq_B Activating transcriptio 11.8 48 0.0016 23.1 -0.0 10 31-40 36-45 (49)
5 1xrd_A LH-1, light-harvesting 10.7 63 0.0022 22.9 0.3 27 3-29 12-40 (52)
6 3lpe_B DNA-directed RNA polyme 10.4 65 0.0022 23.1 0.3 11 242-253 36-46 (59)
7 3qwn_A Hypothetical NIGD-like 10.3 2.3E+02 0.0079 25.0 3.9 32 73-104 139-172 (214)
8 3k6o_A Uncharacterized protein 10.2 3.9E+02 0.013 23.5 5.4 48 72-120 145-194 (224)
9 4evu_A Putative periplasmic pr 10.0 2.8E+02 0.0097 20.5 3.7 33 110-142 20-55 (72)
10 2bc4_B HLA class II histocompa 9.6 2.6E+02 0.009 23.2 3.9 59 133-197 151-210 (211)
No 1
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=14.93 E-value=75 Score=25.57 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=10.8
Q ss_pred CCcchhhhhhHHHHH
Q 022239 242 PERSFWAKYWMYLIP 256 (300)
Q Consensus 242 ~erSFlaKYWmYIvP 256 (300)
..|-||++|-||++-
T Consensus 88 ~rkmwwkn~K~~iii 102 (119)
T 2kog_A 88 KRKYWWKNLKMMIIL 102 (119)
T ss_dssp HHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345788888888763
No 2
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=13.29 E-value=55 Score=20.14 Aligned_cols=7 Identities=57% Similarity=0.378 Sum_probs=3.2
Q ss_pred hhhhcCC
Q 022239 287 AAIQRGT 293 (300)
Q Consensus 287 ~~~~~~~ 293 (300)
+.-||-+
T Consensus 10 ashqrvt 16 (29)
T 1cn3_F 10 ASHQRVT 16 (29)
T ss_dssp TCCCCCE
T ss_pred ccccccC
Confidence 3336643
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=13.01 E-value=82 Score=23.57 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=8.6
Q ss_pred hhhhhHHHHH
Q 022239 247 WAKYWMYLIP 256 (300)
Q Consensus 247 laKYWmYIvP 256 (300)
++-||.||+-
T Consensus 6 ~~v~w~yI~G 15 (74)
T 1ldd_A 6 LQRSLPFIEG 15 (74)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7899999874
No 4
>2rpq_B Activating transcription factor 7-interacting protein 1; SUMO, SIM, nucleus, UBL conjugation, UBL conjugation pathway, activator; NMR {Homo sapiens}
Probab=11.84 E-value=48 Score=23.07 Aligned_cols=10 Identities=60% Similarity=0.913 Sum_probs=8.0
Q ss_pred cccccccccc
Q 022239 31 ELLVDDEEFG 40 (300)
Q Consensus 31 ~~~~~~~~~~ 40 (300)
.|-+||||+|
T Consensus 36 DLTlDdEe~g 45 (49)
T 2rpq_B 36 DLTMDDEESG 45 (49)
T ss_pred Eeeecchhcc
Confidence 3567999998
No 5
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=10.65 E-value=63 Score=22.89 Aligned_cols=27 Identities=33% Similarity=0.451 Sum_probs=15.3
Q ss_pred ccchhHHHHHHHHHHHH--Hhhccccccc
Q 022239 3 KKLPLFALFLFFFSLLL--FCHSSLAFES 29 (300)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 29 (300)
|-+..++.+++++++++ ++.|+..|.+
T Consensus 12 r~Lva~~~fl~vlAl~IHfilLSt~~fNW 40 (52)
T 1xrd_A 12 QALVGLATFLFVLALLIHFILLSTERFNW 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 34555566667777654 4445345655
No 6
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=10.40 E-value=65 Score=23.12 Aligned_cols=11 Identities=45% Similarity=0.238 Sum_probs=6.9
Q ss_pred CCcchhhhhhHH
Q 022239 242 PERSFWAKYWMY 253 (300)
Q Consensus 242 ~erSFlaKYWmY 253 (300)
+++||+|| ||-
T Consensus 36 P~~SwvAk-~~~ 46 (59)
T 3lpe_B 36 PEKSEIAK-KAG 46 (59)
T ss_dssp TTTCHHHH-HTT
T ss_pred CchhHHHH-HhC
Confidence 45677777 543
No 7
>3qwn_A Hypothetical NIGD-like protein; SH3-like barrel fold, structural genomics, joint center for structural genomics, JCSG; 2.42A {Bacteroides caccae}
Probab=10.27 E-value=2.3e+02 Score=24.95 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=26.1
Q ss_pred CCCceeEEEEEecCC-C-CceeccceeeccccCC
Q 022239 73 SDSKIQFSLEHAFGD-S-DFVPAGTFSARLKTSS 104 (300)
Q Consensus 73 ~d~~i~~~LEHsl~d-~-~Ft~RG~is~~lk~s~ 104 (300)
.++.+.++|.|.-++ . .++.+|-++++|....
T Consensus 139 ~~~~~~LeLrHna~gD~~~y~~~gyvSfpL~~l~ 172 (214)
T 3qwn_A 139 TNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYA 172 (214)
T ss_dssp HHCEEEEEEEEECTTCCSCEEEEEEEEEECGGGC
T ss_pred CCcEEEEEEEECCCCCCccceecEEEEEEhHHCc
Confidence 467899999999874 4 8889999998888654
No 8
>3k6o_A Uncharacterized protein DUF1344; protein of unknown function DUF1344, structural genomics, JO center for structural genomics; HET: PG4; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=10.22 E-value=3.9e+02 Score=23.51 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCCCceeEEEEEecCC-C-CceeccceeeccccCCCCCccceeeeeeccCC
Q 022239 72 DSDSKIQFSLEHAFGD-S-DFVPAGTFSARLKTSSHGGQTLTKLRFSRNAF 120 (300)
Q Consensus 72 e~d~~i~~~LEHsl~d-~-~Ft~RG~is~~lk~s~~g~~t~~sl~~sq~~L 120 (300)
++++.+.++|.|.-++ . .+.. |-++++|....+-......|++.-++.
T Consensus 145 ~~~~~i~LeLrHna~gD~~~y~~-gyvSfpL~~l~~~~~~~~~i~l~~nty 194 (224)
T 3k6o_A 145 TKDGYAHLELRYNNNGSQGRLVP-GMVSFKLDDYSPENSELKGIKVLVNPV 194 (224)
T ss_dssp CSSSEEEEEEEEECTTCCCCEEE-EEEEEECGGGSTTCTTCSEEEEEECBS
T ss_pred CCCCEEEEEEEeCCCCCccccEe-EEEEEEhHHCccccCCCcEEEEEEEec
Confidence 4668899999999974 4 6777 999999987653322224566655544
No 9
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=10.04 E-value=2.8e+02 Score=20.53 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=20.0
Q ss_pred ceeeeeeccCCCHHHH-HHHHHHhcCCC--cEEEEe
Q 022239 110 LTKLRFSRNAFTGEDK-EKFEKLLQDDD--FYRIRL 142 (300)
Q Consensus 110 ~~sl~~sq~~LS~~e~-~kLk~la~~dg--~YrIRv 142 (300)
+++++++..--|+.|. ++|.+.|.+-| +|+|-.
T Consensus 20 ~gtVsvsg~~~sp~D~~~~lskkAdekGA~~y~Ii~ 55 (72)
T 4evu_A 20 FDSVKFTGNYGNMTEISYQVAKRAAKKGAKYYHITR 55 (72)
T ss_dssp SEEEEEEECCSSHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred ccEEEECCccCChHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4445555554555564 77877776544 777763
No 10
>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class II, immune system; HET: NDG BMA; 2.27A {Homo sapiens} PDB: 1hdm_B 1k8i_B*
Probab=9.59 E-value=2.6e+02 Score=23.23 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred cCCCcEEEEeCCCccCCCCCceEEeeecccccccCCCCceEEEEeeC-CeEEEEEEeecCCCCCCc
Q 022239 133 QDDDFYRIRLPSNTVSPPGRDYIISSVKARCLPREGLDEHFVIHMEG-VNILAVNYGAFGACSYPR 197 (300)
Q Consensus 133 ~~dg~YrIRvps~v~~p~g~~~v~SSVkAC~L~~s~L~d~l~lhlD~-GnVigVsy~~~g~C~~~~ 197 (300)
..||.|++...-.+...++..|- |..-+.+|.+.++++.+. -...=...-++.-||.|+
T Consensus 151 ~~dgty~~~s~l~v~~~~~~~yt------C~V~H~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (211)
T 2bc4_B 151 NGDWTYQTLSHLALTPSYGDTYT------CVVEHIGAPEPILRDWTPGLSPMQTLKKPPTPPPEPE 210 (211)
T ss_dssp CSSSCEEEEEEEEECCCSSCCEE------EEEECTTSSSCEEEEECTTC-----------------
T ss_pred CCCCeEEEEEEEEEeCCCCCEEE------EEEEeCCCCCceEEEcCCCCCHHHhccCCCCCcCCCC
Done!