Query 022239
Match_columns 300
No_of_seqs 121 out of 131
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 16:13:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022239.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022239hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ldda_ a.4.5.34 (A:) Anaphase 36.2 6.9 0.0005 27.9 1.6 10 247-256 6-15 (74)
2 d2pf1a2 g.32.1.1 (A:36-65) Pro 18.7 15 0.0011 21.6 0.5 6 245-250 5-10 (30)
3 d2dlqa4 g.37.1.1 (A:8-34) GLI- 16.4 15 0.0011 21.0 0.1 13 241-253 5-17 (27)
4 d2fhfa2 b.1.18.2 (A:163-287) P 12.3 2.2E+02 0.016 21.1 6.2 43 78-132 35-78 (125)
5 d1x2ga1 d.224.1.3 (A:247-337) 10.0 1.9E+02 0.014 19.9 4.8 48 77-133 5-52 (91)
6 d2cpga_ a.43.1.3 (A:) Transcri 9.6 27 0.002 21.9 -0.2 19 119-137 8-26 (43)
7 d2jnaa1 d.230.6.1 (A:1-96) Hyp 9.3 1.2E+02 0.0087 21.8 3.4 24 119-142 50-76 (96)
8 d2axtk1 f.23.36.1 (K:10-46) Ph 9.2 87 0.0063 19.0 2.1 14 4-17 15-28 (37)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 8.6 1.6E+02 0.012 20.3 3.8 21 245-266 60-80 (91)
10 d1oh1a_ b.61.2.2 (A:) Staphost 8.2 40 0.0029 25.0 0.2 13 243-255 15-27 (109)
No 1
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.21 E-value=6.9 Score=27.87 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=8.9
Q ss_pred hhhhhHHHHH
Q 022239 247 WAKYWMYLIP 256 (300)
Q Consensus 247 laKYWmYIvP 256 (300)
+|+||-||+-
T Consensus 6 lq~~w~yI~g 15 (74)
T d1ldda_ 6 LQRSLPFIEG 15 (74)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7999999875
No 2
>d2pf1a2 g.32.1.1 (A:36-65) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.67 E-value=15 Score=21.55 Aligned_cols=6 Identities=83% Similarity=1.979 Sum_probs=5.0
Q ss_pred chhhhh
Q 022239 245 SFWAKY 250 (300)
Q Consensus 245 SFlaKY 250 (300)
-||+||
T Consensus 5 ~fwaky 10 (30)
T d2pf1a2 5 AFWAKY 10 (30)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 489998
No 3
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.36 E-value=15 Score=21.03 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=10.1
Q ss_pred CCCcchhhhhhHH
Q 022239 241 PPERSFWAKYWMY 253 (300)
Q Consensus 241 ~~erSFlaKYWmY 253 (300)
.-.|+|+.||+.-
T Consensus 5 ~c~k~f~skyylk 17 (27)
T d2dlqa4 5 TCHKKFLSKYYLK 17 (27)
T ss_dssp TTCCCCSSHHHHH
T ss_pred chHHHHHHhHhhh
Confidence 3468999999764
No 4
>d2fhfa2 b.1.18.2 (A:163-287) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}
Probab=12.28 E-value=2.2e+02 Score=21.13 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=29.1
Q ss_pred eEEEEEecCCC-CceeccceeeccccCCCCCccceeeeeeccCCCHHHHHHHHHHh
Q 022239 78 QFSLEHAFGDS-DFVPAGTFSARLKTSSHGGQTLTKLRFSRNAFTGEDKEKFEKLL 132 (300)
Q Consensus 78 ~~~LEHsl~d~-~Ft~RG~is~~lk~s~~g~~t~~sl~~sq~~LS~~e~~kLk~la 132 (300)
.+.|+||...+ .+..-|. ..-..+.+....|+++++.||--|+
T Consensus 35 ~~~L~~S~~a~i~~~~~~~------------~~g~~i~L~~~~L~~~~~akfPHLa 78 (125)
T d2fhfa2 35 IVRLYYSHSSKVAADSNGE------------FSDKYVKLTPTTVNQQVSMRFPHLA 78 (125)
T ss_dssp EEEEEEESSSCCCCCTTSB------------CCSEEEECEEECCCHHHHHHCGGGT
T ss_pred EEEEEECCCCCeeEccCcc------------cCCeEEEEeeCCCCHHHHHhCcccc
Confidence 57899988733 3222221 1125677888899999999999885
No 5
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.00 E-value=1.9e+02 Score=19.94 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=35.7
Q ss_pred eeEEEEEecCCCCceeccceeeccccCCCCCccceeeeeeccCCCHHHHHHHHHHhc
Q 022239 77 IQFSLEHAFGDSDFVPAGTFSARLKTSSHGGQTLTKLRFSRNAFTGEDKEKFEKLLQ 133 (300)
Q Consensus 77 i~~~LEHsl~d~~Ft~RG~is~~lk~s~~g~~t~~sl~~sq~~LS~~e~~kLk~la~ 133 (300)
.++.++|.|.- |+|++++.-.+ ..+..+++--+-|...+.+.|.+...
T Consensus 5 f~~~~~~rF~~------G~ve~~l~V~~---G~I~~~~i~gDfl~~~~i~~le~~L~ 52 (91)
T d1x2ga1 5 FSHLLDERFTW------GGVELHFDVEK---GHITRAQVFTDSLNPAPLEALAGRLQ 52 (91)
T ss_dssp CSEEEEEEETT------EEEEEEEEEET---TEEEEEEEEECCSCCHHHHHHHHHHT
T ss_pred CceeheeecCC------ceEEEEEEEeC---CEEEEEEEEcCCCCcHHHHHHHHHHc
Confidence 57888888873 67765555433 35778888888999999999988654
No 6
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
Probab=9.64 E-value=27 Score=21.92 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHhcCCCc
Q 022239 119 AFTGEDKEKFEKLLQDDDF 137 (300)
Q Consensus 119 ~LS~~e~~kLk~la~~dg~ 137 (300)
.||++..+.|+++|++-||
T Consensus 8 slse~~~~~lek~a~e~g~ 26 (43)
T d2cpga_ 8 TLSESVLENLEKMAREMGL 26 (43)
T ss_dssp EEEHHHHHHHHHHHHHHTC
T ss_pred EecHHHHHHHHHHHHHcCc
Confidence 5788899999999988776
No 7
>d2jnaa1 d.230.6.1 (A:1-96) Hypothetical protein STM0082 {Salmonella typhimurium [TaxId: 90371]}
Probab=9.31 E-value=1.2e+02 Score=21.77 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=14.6
Q ss_pred CCCHHHH-HHHHHHhcCC--CcEEEEe
Q 022239 119 AFTGEDK-EKFEKLLQDD--DFYRIRL 142 (300)
Q Consensus 119 ~LS~~e~-~kLk~la~~d--g~YrIRv 142 (300)
.-|..|. ++|.+.|.+. .+|||--
T Consensus 50 ~~sp~D~~~~Ls~KADe~GA~~y~Ii~ 76 (96)
T d2jnaa1 50 ISSPSDLREKLSELADAKGGKYYHIIA 76 (96)
T ss_dssp CCSHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 3345555 6677766553 3888874
No 8
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.16 E-value=87 Score=19.04 Aligned_cols=14 Identities=14% Similarity=0.562 Sum_probs=10.4
Q ss_pred cchhHHHHHHHHHH
Q 022239 4 KLPLFALFLFFFSL 17 (300)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (300)
.+|.|-++.++|++
T Consensus 15 vlPiIPv~f~lLaf 28 (37)
T d2axtk1 15 VLPVIPVLFLALAF 28 (37)
T ss_dssp HGGGHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 36788777777777
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.56 E-value=1.6e+02 Score=20.26 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=14.0
Q ss_pred chhhhhhHHHHHHHHHHHHHhh
Q 022239 245 SFWAKYWMYLIPLGLIVINAVT 266 (300)
Q Consensus 245 SFlaKYWmYIvP~vl~v~n~is 266 (300)
..+ ..+|-++|+++++..++-
T Consensus 60 ~~l-Ei~WtiIP~iil~~iav~ 80 (91)
T d1fftb2 60 NKV-EAVVWTVPILIIIFLAVL 80 (91)
T ss_dssp SHH-HHHTTHHHHHHHHHHHHH
T ss_pred cee-hhhHHHHHHHHHHHHHHH
Confidence 344 555556899998876553
No 10
>d1oh1a_ b.61.2.2 (A:) Staphostatin A (SAV1910, SA1726) {Staphylococcus aureus [TaxId: 1280]}
Probab=8.24 E-value=40 Score=25.01 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=9.8
Q ss_pred CcchhhhhhHHHH
Q 022239 243 ERSFWAKYWMYLI 255 (300)
Q Consensus 243 erSFlaKYWmYIv 255 (300)
+-.|=+|||..|+
T Consensus 15 ~~~~~~kywlhil 27 (109)
T d1oh1a_ 15 KCNSEAKYYLNII 27 (109)
T ss_dssp CCSSCCHHHHHHT
T ss_pred ccchhhhhhhhhh
Confidence 3456789999986
Done!